Query 006348
Match_columns 649
No_of_seqs 86 out of 88
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 22:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx7_A Nematocyst outer WALL a 11.9 56 0.0019 22.7 0.3 8 50-57 8-15 (28)
2 4b4a_A TATC, SEC-independent p 7.5 5.4E+02 0.018 25.6 5.7 81 412-493 71-170 (249)
3 2kv5_A FST, putative uncharact 6.0 3.8E+02 0.013 19.6 2.6 18 390-407 7-24 (33)
4 2pbi_A Regulator of G-protein 5.9 2.1E+02 0.0072 30.8 1.9 60 266-328 49-123 (424)
5 1d1r_A Hypothetical 11.4 KD pr 5.1 3.1E+02 0.011 24.8 2.2 34 45-78 7-42 (116)
6 1qys_A TOP7; alpha-beta, novel 4.6 63 0.0022 28.0 -2.6 64 224-287 11-79 (106)
7 2k21_A Potassium voltage-gated 4.0 6E+02 0.02 23.8 3.2 19 335-353 57-75 (138)
8 3ixz_A Potassium-transporting 3.7 2.8E+03 0.094 24.3 9.3 20 411-435 930-949 (1034)
9 1e0n_A Hypothetical protein; Y 3.7 4.8E+02 0.016 17.7 1.7 16 294-309 7-22 (27)
10 1vf5_H Protein PET N; photosyn 3.5 5.8E+02 0.02 18.2 2.0 12 345-356 14-25 (29)
No 1
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=11.86 E-value=56 Score=22.67 Aligned_cols=8 Identities=88% Similarity=1.477 Sum_probs=6.6
Q ss_pred cCCCCccc
Q 006348 50 QQPGCSSE 57 (649)
Q Consensus 50 qqp~Cl~~ 57 (649)
|||||++.
T Consensus 8 qqpgcssa 15 (28)
T 2nx7_A 8 QQPGCSSA 15 (28)
T ss_dssp HSTTCCGG
T ss_pred cCCCcccc
Confidence 88999874
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=7.46 E-value=5.4e+02 Score=25.61 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCcccccchhHHHH-----HHHHHhhheeeeeccc------ch--h----H--HHHHH
Q 006348 412 LAFLVLILVWLCELFTLISCSVRTPISMKFFPRFFL-----LYFLVFHIYFFSYAYG------FS--Y----M--ALGTA 472 (649)
Q Consensus 412 lAFyViliVWladqf~ai~c~vRT~~S~r~wpRfFy-----LY~~~Fh~Yfysy~yg------fS--y----L--AL~ts 472 (649)
.++.+-+.+|+.+.+.-+.-+.+-.. ||+..++.. .+..+...||.-+|.. |+ . . .+..-
T Consensus 71 ~g~~~a~P~ilyQiw~Fi~PgLy~~E-rr~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Y 149 (249)
T 4b4a_A 71 VGFIIASPVILYQFWRFIEPALYSHE-KRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMY 149 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCCC-TTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHH
Confidence 46677788899999888876544443 556555543 2333445555434432 21 1 1 34445
Q ss_pred HHHHHHHHHHHHhhccchHHH
Q 006348 473 AAFVQHLILYFWNHFEVPALQ 493 (649)
Q Consensus 473 ~lfi~HsMLyF~~~yElPal~ 493 (649)
.-|+..+++.|=-.||+|.+.
T Consensus 150 l~fv~~l~l~fGl~FelPvi~ 170 (249)
T 4b4a_A 150 ISFVLKLVVAFGIAFEMPIVL 170 (249)
T ss_dssp HHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999763
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.98 E-value=3.8e+02 Score=19.65 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 006348 390 LVFVPIMIGILFFLFEFY 407 (649)
Q Consensus 390 LVFVpvmIGm~afMsEFF 407 (649)
++.+|+.||++--|++-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344788999988776655
No 4
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=5.92 E-value=2.1e+02 Score=30.84 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=37.7
Q ss_pred CCCC-cchHHHHHHHhhcCchHHHHhhhhc---cCCceeEEeccc---------CeEEeec--cccCCCCCCcccchh
Q 006348 266 HPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLS--YAQEPPEGPAKFGDY 328 (649)
Q Consensus 266 ~~CF-Gd~~~rlLL~~flGYDtILmNSlk~---~~gkGYLrN~~T---------gE~Y~l~--~~~~~~~~~ar~~~y 328 (649)
..|| |..+..+|++++ +.|+ --++.- --..||++.+.. +-.|||. |.|.+..|.+.=++|
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~py~wps~~w~~~~~dy 123 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDY 123 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECCGGGSCCSSCCCCHHHH
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCCcccCcccCCCcchhHH
Confidence 4899 999999999988 5665 233321 124688887754 4578886 455554444432344
No 5
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=5.12 E-value=3.1e+02 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=12.8
Q ss_pred hhhcccCCC--CcccccCcccCccceEEEEEeccCC
Q 006348 45 HANYVQQPG--CSSEFAGIRMTEAQLIQIKISSAGL 78 (649)
Q Consensus 45 H~nFvqqp~--Cl~~~~~~~wpr~gilrVeI~~~~~ 78 (649)
+.+|++.+| |-+.-...-=+++|.|+|.+.|+|.
T Consensus 7 ~~vyst~~~~~~~~~~~~~~p~~~~~V~I~~er~gR 42 (116)
T 1d1r_A 7 RLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGR 42 (116)
T ss_dssp ---------------------CCCCEEEEEECCCSS
T ss_pred cEEEeCCCCccCccccccCCCCCCCeEEEEEEeCCC
Confidence 456776555 5443223223578999999998766
No 6
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=4.59 E-value=63 Score=28.05 Aligned_cols=64 Identities=25% Similarity=0.407 Sum_probs=38.9
Q ss_pred hhccccCCCeEEEeccceeeccCcc---cccccCceEEEEEeCCCCCCCcchHHHHHHHhh--cCchHH
Q 006348 224 ENRTKAFEPTYLYTMEKGYFLLPEA---DKSRHNIRTFNISISAQHPCFGNRWQQLLINRF--VGYDTI 287 (649)
Q Consensus 224 e~~~k~~E~~yeYSlEyGfLrLs~~---aR~rhnIpt~~VtLd~~~~CFGd~~~rlLL~~f--lGYDtI 287 (649)
++..|.|+|+|--..|-.+-..-.+ .-...+-.-+.|++.++.+--.+++...+++-| +||.+|
T Consensus 11 ddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndi 79 (106)
T 1qys_A 11 DDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDI 79 (106)
T ss_dssp ECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcce
Confidence 4456788888877766543211111 112334444556666666666778888888766 788775
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.99 E-value=6e+02 Score=23.77 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 006348 335 VLMMSLFVFFTTTMSVSFT 353 (649)
Q Consensus 335 Vli~sLFvfF~fT~~VSfl 353 (649)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4678889898887777764
No 8
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=3.68 E-value=2.8e+03 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHhhhhhhhcccccC
Q 006348 411 LLAFLVLILVWLCELFTLISCSVRT 435 (649)
Q Consensus 411 ~lAFyViliVWladqf~ai~c~vRT 435 (649)
+++|..+. +++.|.++.| ||
T Consensus 930 t~~f~~lv---~~q~~~~~~~--r~ 949 (1034)
T 3ixz_A 930 TVFFISIE---MCQIADVLIR--KT 949 (1034)
T ss_pred HHHHHHHH---HHHHHHHHhh--cc
Confidence 44444433 4788888875 55
No 9
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=3.66 E-value=4.8e+02 Score=17.67 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.8
Q ss_pred ccCCceeEEecccCeE
Q 006348 294 HTPGQGYLYNCQTKEF 309 (649)
Q Consensus 294 ~~~gkGYLrN~~TgE~ 309 (649)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3577889999999873
No 10
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=3.53 E-value=5.8e+02 Score=18.22 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=7.9
Q ss_pred HHHHHhHHhhhh
Q 006348 345 TTTMSVSFTLRE 356 (649)
Q Consensus 345 ~fT~~VSflLR~ 356 (649)
+||.++|++.+.
T Consensus 14 vftfSlslVVWG 25 (29)
T 1vf5_H 14 VFTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhheeeeEEEEe
Confidence 346688887664
Done!