Query 006348
Match_columns 649
No_of_seqs 86 out of 88
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 22:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hr6a2 d.185.1.1 (A:234-470) 4.3 85 0.0062 27.8 -0.0 29 604-634 45-81 (237)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 4.2 1.9E+02 0.014 18.8 1.7 16 294-309 9-24 (29)
3 d1ywia1 b.72.1.1 (A:15-42) Hun 4.0 1.9E+02 0.014 18.7 1.5 16 294-309 8-23 (28)
4 d1tbua1 d.38.1.3 (A:13-116) Pe 3.1 2.4E+02 0.017 22.6 1.8 49 22-79 25-80 (104)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 2.8 1.6E+03 0.11 20.9 8.2 13 422-436 384-396 (472)
6 d1uzva_ b.115.1.1 (A:) Fucose- 2.8 2.5E+02 0.018 23.5 1.6 16 65-80 59-74 (114)
7 d1krha2 c.25.1.2 (A:206-338) B 2.7 62 0.0045 25.9 -2.5 23 606-631 9-31 (133)
8 d2f2ha2 b.30.5.11 (A:1-247) Pu 2.5 5.7E+02 0.042 22.9 3.9 16 62-77 58-73 (247)
9 d2guka1 d.360.1.1 (A:4-114) Hy 2.4 2.7E+02 0.02 23.2 1.2 13 275-287 89-101 (111)
10 d2cosa1 a.5.2.1 (A:8-48) Serin 2.3 5.3E+02 0.038 17.7 2.5 18 13-30 22-39 (41)
No 1
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.28 E-value=85 Score=27.80 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhhhhhcc-cccc
Q 006348 604 LLLWILGGASS-------EGLNSFLSMFRDVREQ-GQVF 634 (649)
Q Consensus 604 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~ 634 (649)
+|==||||..+ +|..| ..|+.+|+. |.+|
T Consensus 45 vl~~iLGG~~~~~~~~~g~G~sS--rL~~~lre~~gLay 81 (237)
T d1hr6a2 45 TLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVE 81 (237)
T ss_dssp HHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEE
T ss_pred HHHHHhCCCcccccCCCCCCccc--HHHHHHHHhcCchh
Confidence 55567887543 56776 478999984 5554
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.20 E-value=1.9e+02 Score=18.84 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 006348 294 HTPGQGYLYNCQTKEF 309 (649)
Q Consensus 294 ~~~gkGYLrN~~TgE~ 309 (649)
..+|+=|-+|.+|+|-
T Consensus 9 ~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 9 DASGRIYYYNTLTKKS 24 (29)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 3
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.98 E-value=1.9e+02 Score=18.67 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.3
Q ss_pred ccCCceeEEecccCeE
Q 006348 294 HTPGQGYLYNCQTKEF 309 (649)
Q Consensus 294 ~~~gkGYLrN~~TgE~ 309 (649)
..+|+=|-+|.+|+|-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4578999999999983
No 4
>d1tbua1 d.38.1.3 (A:13-116) Peroxisomal long-chain acyl-CoA thioesterase 1, TES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.14 E-value=2.4e+02 Score=22.58 Aligned_cols=49 Identities=6% Similarity=0.020 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-------hhhhhcccCCCCcccccCcccCccceEEEEEeccCCC
Q 006348 22 VRAYLEYIYLFIAITLFCVLV-------VMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLW 79 (649)
Q Consensus 22 VRr~iEyi~L~~AI~lF~iLv-------ymH~nFvqqp~Cl~~~~~~~wpr~gilrVeI~~~~~w 79 (649)
-|++.==.++..|+.+-.--+ -||..|+.+..+... =.++||++|+|.-
T Consensus 25 ~r~~fGG~~~Aqal~Aa~~tv~~~~~~~Slh~~Fl~pg~~~~p---------i~~~Ve~lrdGrs 80 (104)
T d1tbua1 25 SKGTFGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTK---------ITYHVQNLRNGRN 80 (104)
T ss_dssp ---CCHHHHHHHHHHHHHTTSCTTCEEEEEEEEECSCCCTTSC---------CEEEEEEEEECSS
T ss_pred CCceEHHHHHHHHHHHHHhhCCccccceeEEEEEecCCCCCce---------EEEEEEeeeCCcc
Confidence 344444445555555443222 378888866543332 2478999999873
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.85 E-value=1.6e+03 Score=20.93 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=9.1
Q ss_pred HhhhhhhhcccccCc
Q 006348 422 LCELFTLISCSVRTP 436 (649)
Q Consensus 422 ladqf~ai~c~vRT~ 436 (649)
+++.+.+++| ||.
T Consensus 384 ~~q~~~~~~~--rs~ 396 (472)
T d1wpga4 384 TIEMCNALNS--LSE 396 (472)
T ss_dssp HHHHHHHHTT--SCS
T ss_pred HHHHHHHHHH--hcC
Confidence 4688888885 653
No 6
>d1uzva_ b.115.1.1 (A:) Fucose-binding lectin II (PA-LII) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.80 E-value=2.5e+02 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.4
Q ss_pred ccceEEEEEeccCCCC
Q 006348 65 EAQLIQIKISSAGLWS 80 (649)
Q Consensus 65 r~gilrVeI~~~~~w~ 80 (649)
..|.+||||+-||+-+
T Consensus 59 ~~GkVrieV~~nGkps 74 (114)
T d1uzva_ 59 SSGKVQVQVSVNGRPS 74 (114)
T ss_dssp TTCEEEEEEEETTEEC
T ss_pred CCceEEEEEEeCCccc
Confidence 3799999999999843
No 7
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=2.66 E-value=62 Score=25.91 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=16.3
Q ss_pred HHHhcCCCccchhhhhhhhhhhhccc
Q 006348 606 LWILGGASSEGLNSFLSMFRDVREQG 631 (649)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (649)
+||-||. |+.-|.||.|+.-+++
T Consensus 9 v~IAgG~---GItP~~s~l~~~~~~~ 31 (133)
T d1krha2 9 LMLAGGT---GIAPFLSMLQVLEQKG 31 (133)
T ss_dssp EEEEEGG---GHHHHHHHHHHHHHHC
T ss_pred EEEEccH---hHHHHHHHHHHHHHcC
Confidence 4555665 8888888888775544
No 8
>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.48 E-value=5.7e+02 Score=22.90 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=13.0
Q ss_pred ccCccceEEEEEeccC
Q 006348 62 RMTEAQLIQIKISSAG 77 (649)
Q Consensus 62 ~wpr~gilrVeI~~~~ 77 (649)
+-|.+++|||+|+-..
T Consensus 58 ~sp~~~virV~i~h~~ 73 (247)
T d2f2ha2 58 FSPQEGIVGVRIEHFQ 73 (247)
T ss_dssp ECSSTTEEEEEEESCT
T ss_pred EecCCCEEEEEEEeCC
Confidence 4688999999998643
No 9
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.38 E-value=2.7e+02 Score=23.18 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.8
Q ss_pred HHHHHhhcCchHH
Q 006348 275 QLLINRFVGYDTI 287 (649)
Q Consensus 275 rlLL~~flGYDtI 287 (649)
.|+|.-+||||.-
T Consensus 89 DFiLG~mLGYD~~ 101 (111)
T d2guka1 89 DFIIGAMLGYDIC 101 (111)
T ss_dssp HHHHHHHTTCCHH
T ss_pred HHHHHHHhcccHH
Confidence 3899999999963
No 10
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.32 E-value=5.3e+02 Score=17.69 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.4
Q ss_pred HHhhhcCchhhhHHHHHH
Q 006348 13 RFSRVLTPRVRAYLEYIY 30 (649)
Q Consensus 13 ~~a~~~~~~VRr~iEyi~ 30 (649)
++.|+=.+.+-.+||||.
T Consensus 22 al~qt~~rsieaaie~is 39 (41)
T d2cosa1 22 ALKQTGSRSIEAALEYIS 39 (41)
T ss_dssp HHHHHTSCCHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHh
Confidence 456888999999999985
Done!