Query 006349
Match_columns 649
No_of_seqs 308 out of 1557
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 21:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-165 8E-170 1402.4 58.4 633 15-649 5-640 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 9E-138 2E-142 1136.9 35.1 559 35-649 16-577 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4.9E-89 1.1E-93 723.6 18.7 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.2E-35 2.6E-40 336.4 9.8 288 39-336 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 7E-20 1.5E-24 199.1 13.8 263 60-352 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 1.8E-13 3.9E-18 144.4 17.0 192 39-271 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 2.7E-11 5.9E-16 139.9 24.6 163 34-231 273-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 3.1E-11 6.7E-16 146.3 17.9 259 37-351 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.3 1.1E-10 2.4E-15 141.4 18.0 150 37-231 334-489 (1027)
10 COG3250 LacZ Beta-galactosidas 99.0 2.3E-09 5E-14 126.1 15.6 123 34-198 281-409 (808)
11 PF02837 Glyco_hydro_2_N: Glyc 99.0 2.8E-09 6.1E-14 102.6 11.1 101 474-580 63-165 (167)
12 PF00150 Cellulase: Cellulase 98.9 1.6E-08 3.6E-13 104.3 15.4 160 49-230 4-171 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 9.4E-08 2E-12 87.0 9.7 83 469-558 25-110 (111)
14 PRK10150 beta-D-glucuronidase; 98.3 2.7E-06 5.9E-11 98.7 11.7 101 475-581 61-179 (604)
15 smart00633 Glyco_10 Glycosyl h 98.2 5.3E-06 1.1E-10 86.0 8.3 117 91-232 3-126 (254)
16 PF03198 Glyco_hydro_72: Gluca 98.1 3.1E-05 6.7E-10 81.8 13.5 156 34-227 6-179 (314)
17 PRK09525 lacZ beta-D-galactosi 98.1 1.6E-05 3.4E-10 97.2 12.0 98 478-581 119-218 (1027)
18 PRK10340 ebgA cryptic beta-D-g 98.0 1.7E-05 3.7E-10 97.0 10.3 98 478-581 108-206 (1021)
19 TIGR03356 BGL beta-galactosida 97.8 4.1E-05 8.8E-10 85.4 8.3 96 68-175 54-150 (427)
20 PLN02705 beta-amylase 97.7 6.7E-05 1.4E-09 84.5 7.6 80 66-151 266-357 (681)
21 PLN00197 beta-amylase; Provisi 97.7 9.6E-05 2.1E-09 82.7 8.0 83 66-152 125-217 (573)
22 PLN02905 beta-amylase 97.7 9.2E-05 2E-09 83.6 7.9 82 67-152 285-376 (702)
23 PLN02801 beta-amylase 97.7 9.4E-05 2E-09 82.2 7.8 82 66-151 35-126 (517)
24 PLN02161 beta-amylase 97.7 0.00018 4E-09 79.8 9.8 83 66-152 115-207 (531)
25 PF13204 DUF4038: Protein of u 97.6 0.0002 4.4E-09 75.8 9.6 224 43-297 2-274 (289)
26 PLN02803 beta-amylase 97.6 0.00012 2.7E-09 81.5 8.0 83 66-152 105-197 (548)
27 PF01373 Glyco_hydro_14: Glyco 97.3 0.00028 6E-09 77.1 5.1 115 69-192 17-152 (402)
28 PF07745 Glyco_hydro_53: Glyco 97.1 0.0017 3.6E-08 70.1 8.2 141 71-231 27-177 (332)
29 COG3693 XynA Beta-1,4-xylanase 97.1 0.0026 5.6E-08 67.4 9.3 133 77-232 55-194 (345)
30 PF00232 Glyco_hydro_1: Glycos 97.0 0.00078 1.7E-08 75.8 5.1 97 68-176 58-156 (455)
31 PF00331 Glyco_hydro_10: Glyco 96.9 0.00077 1.7E-08 72.5 4.5 158 55-233 11-180 (320)
32 PF14488 DUF4434: Domain of un 96.8 0.018 3.9E-07 56.2 12.3 137 63-229 15-159 (166)
33 PRK15014 6-phospho-beta-glucos 96.8 0.0037 8.1E-08 70.7 8.3 95 69-175 70-167 (477)
34 PRK09852 cryptic 6-phospho-bet 96.6 0.0016 3.5E-08 73.6 4.0 95 69-175 72-169 (474)
35 PLN02998 beta-glucosidase 96.6 0.0021 4.5E-08 73.1 4.5 99 69-175 83-183 (497)
36 COG2730 BglC Endoglucanase [Ca 96.5 0.0092 2E-07 66.3 8.7 115 66-198 66-193 (407)
37 COG3867 Arabinogalactan endo-1 96.4 0.025 5.4E-07 59.4 10.8 119 69-205 64-191 (403)
38 PLN02814 beta-glucosidase 96.4 0.003 6.4E-08 72.0 4.5 96 68-175 77-174 (504)
39 PRK13511 6-phospho-beta-galact 96.4 0.0032 7E-08 71.2 4.5 95 69-175 55-150 (469)
40 TIGR01233 lacG 6-phospho-beta- 96.4 0.011 2.3E-07 67.0 8.5 95 69-175 54-149 (467)
41 PRK09593 arb 6-phospho-beta-gl 96.3 0.0041 8.9E-08 70.4 4.9 96 68-175 73-171 (478)
42 PLN02849 beta-glucosidase 96.2 0.0046 9.9E-08 70.4 4.6 99 69-175 80-180 (503)
43 PRK09589 celA 6-phospho-beta-g 96.2 0.0045 9.8E-08 70.1 4.5 96 68-175 67-165 (476)
44 KOG0496 Beta-galactosidase [Ca 96.2 0.056 1.2E-06 62.2 12.9 71 478-557 556-627 (649)
45 COG2723 BglB Beta-glucosidase/ 95.5 0.014 3E-07 65.1 4.7 95 69-175 60-157 (460)
46 KOG2024 Beta-Glucuronidase GUS 94.9 0.05 1.1E-06 56.2 6.0 57 474-531 83-139 (297)
47 PF14871 GHL6: Hypothetical gl 94.7 0.22 4.7E-06 46.9 9.4 96 72-172 4-121 (132)
48 KOG2230 Predicted beta-mannosi 94.7 0.36 7.8E-06 54.7 12.4 149 44-232 328-494 (867)
49 PRK09936 hypothetical protein; 93.8 1.2 2.6E-05 47.2 13.4 58 63-126 33-91 (296)
50 PF02055 Glyco_hydro_30: O-Gly 93.7 0.83 1.8E-05 52.2 13.3 333 52-413 75-491 (496)
51 PF08531 Bac_rhamnosid_N: Alph 93.4 0.39 8.4E-06 47.0 8.6 94 501-598 5-115 (172)
52 PF02638 DUF187: Glycosyl hydr 92.8 0.4 8.7E-06 51.5 8.4 119 66-194 17-162 (311)
53 COG1649 Uncharacterized protei 92.4 0.98 2.1E-05 50.3 10.9 122 66-197 62-210 (418)
54 TIGR01515 branching_enzym alph 92.2 2 4.3E-05 50.5 13.9 53 75-128 164-227 (613)
55 PRK14706 glycogen branching en 91.1 3.3 7.3E-05 48.9 14.1 51 74-127 174-237 (639)
56 smart00642 Aamy Alpha-amylase 90.8 0.7 1.5E-05 45.1 6.9 65 70-134 21-97 (166)
57 TIGR00542 hxl6Piso_put hexulos 90.7 4.1 8.9E-05 42.5 13.2 131 67-225 15-149 (279)
58 PRK05402 glycogen branching en 90.6 2.6 5.6E-05 50.5 12.8 51 74-127 272-335 (726)
59 COG3934 Endo-beta-mannanase [C 89.4 0.29 6.3E-06 54.6 3.3 168 45-231 3-182 (587)
60 PF05913 DUF871: Bacterial pro 89.1 0.54 1.2E-05 51.5 5.1 73 56-134 2-74 (357)
61 smart00812 Alpha_L_fucos Alpha 89.0 42 0.00091 37.3 25.7 249 64-362 80-342 (384)
62 PLN02447 1,4-alpha-glucan-bran 87.7 11 0.00023 45.4 15.0 61 68-129 251-322 (758)
63 PRK12568 glycogen branching en 87.7 10 0.00022 45.5 14.6 55 72-129 274-341 (730)
64 PRK14705 glycogen branching en 87.6 10 0.00022 47.9 15.3 52 73-127 771-835 (1224)
65 cd00019 AP2Ec AP endonuclease 86.4 6.7 0.00015 40.8 11.2 98 68-194 10-108 (279)
66 PF01229 Glyco_hydro_39: Glyco 85.3 2 4.3E-05 49.0 7.1 66 57-128 28-105 (486)
67 PF00128 Alpha-amylase: Alpha 85.0 1.1 2.3E-05 46.4 4.5 57 71-127 7-72 (316)
68 PRK13398 3-deoxy-7-phosphohept 83.8 5.3 0.00011 42.1 8.9 87 31-127 8-98 (266)
69 PRK13210 putative L-xylulose 5 83.4 11 0.00023 39.2 11.1 132 68-225 16-149 (284)
70 PRK12313 glycogen branching en 82.8 2.5 5.4E-05 49.9 6.7 51 74-127 177-240 (633)
71 PLN03059 beta-galactosidase; P 82.3 1.9 4.1E-05 51.9 5.4 69 480-557 620-715 (840)
72 PF01261 AP_endonuc_2: Xylose 81.5 2.3 4.9E-05 41.4 5.0 125 74-225 1-128 (213)
73 TIGR02402 trehalose_TreZ malto 80.8 3 6.6E-05 48.3 6.3 54 71-127 114-180 (542)
74 PF13200 DUF4015: Putative gly 80.7 5.2 0.00011 43.2 7.6 113 66-179 11-138 (316)
75 COG3250 LacZ Beta-galactosidas 80.4 5.9 0.00013 48.0 8.7 88 462-555 45-133 (808)
76 TIGR02631 xylA_Arthro xylose i 80.2 27 0.00058 38.7 13.2 92 66-175 30-125 (382)
77 PRK01060 endonuclease IV; Prov 80.0 37 0.00081 35.2 13.7 94 70-191 14-109 (281)
78 PF14307 Glyco_tran_WbsX: Glyc 79.4 20 0.00043 39.1 11.7 139 65-232 55-198 (345)
79 PRK09441 cytoplasmic alpha-amy 79.1 3.8 8.3E-05 46.6 6.4 60 68-127 19-101 (479)
80 COG0296 GlgB 1,4-alpha-glucan 79.1 3.8 8.3E-05 48.0 6.3 57 66-126 163-233 (628)
81 TIGR01531 glyc_debranch glycog 78.4 6.2 0.00013 50.0 8.2 112 45-162 104-235 (1464)
82 PRK08673 3-deoxy-7-phosphohept 77.7 9.2 0.0002 41.7 8.4 93 26-127 69-164 (335)
83 COG3589 Uncharacterized conser 77.4 5.6 0.00012 43.0 6.5 72 56-134 4-76 (360)
84 TIGR02403 trehalose_treC alpha 76.5 4 8.8E-05 47.2 5.7 59 69-129 28-97 (543)
85 PLN02960 alpha-amylase 76.4 5.2 0.00011 48.5 6.5 57 71-127 420-486 (897)
86 cd00311 TIM Triosephosphate is 76.2 14 0.00031 38.3 9.1 50 73-128 76-125 (242)
87 PF08308 PEGA: PEGA domain; I 76.0 4.3 9.3E-05 33.4 4.2 43 503-557 3-45 (71)
88 PRK13209 L-xylulose 5-phosphat 75.5 42 0.00091 34.8 12.5 126 68-225 21-154 (283)
89 PRK10785 maltodextrin glucosid 74.7 6.1 0.00013 46.3 6.6 54 71-127 182-246 (598)
90 PF02679 ComA: (2R)-phospho-3- 73.9 5.1 0.00011 41.7 5.0 52 67-128 83-134 (244)
91 TIGR02104 pulA_typeI pullulana 73.7 6.1 0.00013 46.4 6.2 55 72-127 168-249 (605)
92 PF13199 Glyco_hydro_66: Glyco 73.6 6.4 0.00014 45.7 6.2 78 68-145 118-210 (559)
93 PRK09997 hydroxypyruvate isome 73.5 47 0.001 34.2 12.2 42 70-125 17-58 (258)
94 TIGR03234 OH-pyruv-isom hydrox 72.7 35 0.00075 34.9 11.0 43 69-125 15-57 (254)
95 PRK09856 fructoselysine 3-epim 71.8 56 0.0012 33.7 12.3 130 68-225 13-145 (275)
96 PRK10933 trehalose-6-phosphate 70.6 9.2 0.0002 44.4 6.7 55 70-127 35-101 (551)
97 PF01791 DeoC: DeoC/LacD famil 70.6 1.9 4.2E-05 44.1 1.1 59 71-134 79-137 (236)
98 TIGR02456 treS_nterm trehalose 70.2 6.6 0.00014 45.4 5.4 57 68-127 28-96 (539)
99 smart00518 AP2Ec AP endonuclea 70.1 37 0.0008 35.1 10.5 92 70-191 12-104 (273)
100 PRK09505 malS alpha-amylase; R 69.8 9.6 0.00021 45.4 6.7 59 70-128 232-313 (683)
101 cd06592 GH31_glucosidase_KIAA1 68.4 37 0.00081 36.2 10.3 69 63-134 25-97 (303)
102 cd04908 ACT_Bt0572_1 N-termina 68.3 17 0.00037 29.3 6.0 55 67-125 12-66 (66)
103 KOG0626 Beta-glucosidase, lact 67.9 9.8 0.00021 43.5 6.0 113 69-191 92-208 (524)
104 cd06593 GH31_xylosidase_YicI Y 66.7 11 0.00023 40.2 5.8 68 66-133 22-92 (308)
105 PRK09989 hypothetical protein; 66.6 47 0.001 34.2 10.4 43 69-125 16-58 (258)
106 PRK14582 pgaB outer membrane N 65.9 27 0.00058 41.6 9.3 126 52-196 313-468 (671)
107 PF03659 Glyco_hydro_71: Glyco 65.9 24 0.00052 39.2 8.5 54 65-127 14-67 (386)
108 TIGR03849 arch_ComA phosphosul 65.0 14 0.0003 38.3 5.9 52 68-129 71-122 (237)
109 PF14683 CBM-like: Polysacchar 64.3 14 0.0003 36.2 5.6 54 500-555 78-152 (167)
110 PF06832 BiPBP_C: Penicillin-B 63.9 16 0.00034 31.5 5.3 50 501-557 33-82 (89)
111 TIGR02401 trehalose_TreY malto 63.7 16 0.00036 44.3 7.1 63 66-129 14-87 (825)
112 PRK14510 putative bifunctional 62.8 12 0.00026 47.6 5.9 56 72-127 191-267 (1221)
113 KOG2230 Predicted beta-mannosi 62.4 15 0.00032 42.4 5.9 54 500-556 93-146 (867)
114 PRK14565 triosephosphate isome 61.9 27 0.00059 36.2 7.4 52 71-128 75-126 (237)
115 PLN02361 alpha-amylase 61.8 19 0.0004 40.3 6.7 57 71-127 32-96 (401)
116 PF12876 Cellulase-like: Sugar 61.5 12 0.00026 32.4 4.0 48 182-229 6-62 (88)
117 PRK14511 maltooligosyl trehalo 60.6 20 0.00044 43.8 7.1 60 66-129 18-91 (879)
118 PRK12677 xylose isomerase; Pro 60.5 83 0.0018 34.9 11.4 91 67-175 30-124 (384)
119 KOG1412 Aspartate aminotransfe 60.0 35 0.00075 36.9 7.8 160 22-231 76-249 (410)
120 TIGR02100 glgX_debranch glycog 59.8 15 0.00032 43.9 5.8 55 73-127 189-265 (688)
121 PF00121 TIM: Triosephosphate 59.6 6.2 0.00013 41.0 2.3 52 71-128 74-125 (244)
122 PTZ00333 triosephosphate isome 59.2 15 0.00032 38.5 5.0 50 73-128 81-130 (255)
123 PRK14507 putative bifunctional 58.2 21 0.00046 46.5 7.1 61 66-129 756-829 (1693)
124 PF11324 DUF3126: Protein of u 57.7 20 0.00042 29.6 4.4 32 508-539 25-58 (63)
125 cd06568 GH20_SpHex_like A subg 57.2 58 0.0013 35.3 9.4 62 66-127 16-95 (329)
126 PF02065 Melibiase: Melibiase; 56.0 56 0.0012 36.5 9.1 89 61-149 51-148 (394)
127 PRK03705 glycogen debranching 55.1 21 0.00045 42.5 5.9 55 73-127 184-262 (658)
128 cd06589 GH31 The enzymes of gl 54.6 2E+02 0.0042 30.0 12.5 65 66-131 22-90 (265)
129 PRK00042 tpiA triosephosphate 54.1 22 0.00048 37.1 5.3 52 71-128 76-127 (250)
130 PF12733 Cadherin-like: Cadher 53.9 32 0.00069 29.3 5.4 47 502-557 27-74 (88)
131 TIGR02103 pullul_strch alpha-1 53.6 24 0.00053 43.3 6.3 21 107-127 404-424 (898)
132 PF04914 DltD_C: DltD C-termin 53.4 31 0.00067 32.5 5.6 52 107-177 36-88 (130)
133 COG3623 SgaU Putative L-xylulo 53.3 67 0.0015 33.4 8.3 98 66-192 16-115 (287)
134 PRK09875 putative hydrolase; P 53.1 88 0.0019 33.4 9.8 89 38-146 7-95 (292)
135 TIGR00419 tim triosephosphate 52.8 29 0.00062 35.2 5.7 45 73-127 73-117 (205)
136 TIGR00677 fadh2_euk methylenet 51.1 47 0.001 35.2 7.3 108 54-175 130-250 (281)
137 cd06591 GH31_xylosidase_XylS X 50.8 26 0.00057 37.7 5.4 66 66-132 22-91 (319)
138 PF07691 PA14: PA14 domain; I 50.4 1.2E+02 0.0025 27.8 9.1 67 481-557 48-122 (145)
139 PLN00196 alpha-amylase; Provis 49.5 41 0.0009 37.9 6.9 58 71-128 47-113 (428)
140 PRK14566 triosephosphate isome 49.2 51 0.0011 34.7 7.0 50 73-128 87-136 (260)
141 PRK12858 tagatose 1,6-diphosph 49.1 25 0.00055 38.4 5.0 62 64-127 102-163 (340)
142 PLN02877 alpha-amylase/limit d 49.1 33 0.00071 42.5 6.4 21 107-127 466-486 (970)
143 TIGR02102 pullulan_Gpos pullul 48.5 36 0.00078 42.9 6.7 21 107-127 555-575 (1111)
144 TIGR02455 TreS_stutzeri trehal 48.3 50 0.0011 39.1 7.4 71 74-144 80-175 (688)
145 COG5309 Exo-beta-1,3-glucanase 47.5 1.6E+02 0.0035 31.2 10.2 120 66-233 61-180 (305)
146 smart00481 POLIIIAc DNA polyme 46.5 58 0.0012 26.2 5.6 44 69-125 16-59 (67)
147 cd02742 GH20_hexosaminidase Be 46.3 80 0.0017 33.7 8.2 60 65-127 13-92 (303)
148 cd06602 GH31_MGAM_SI_GAA This 45.3 36 0.00079 37.0 5.5 73 60-133 13-92 (339)
149 cd06598 GH31_transferase_CtsZ 45.2 38 0.00083 36.4 5.6 67 66-132 22-95 (317)
150 PF14587 Glyco_hydr_30_2: O-Gl 45.1 1.9E+02 0.004 32.3 10.8 120 96-231 93-226 (384)
151 cd06545 GH18_3CO4_chitinase Th 44.8 96 0.0021 32.0 8.3 74 98-197 36-110 (253)
152 PRK09856 fructoselysine 3-epim 44.7 32 0.0007 35.5 4.8 58 69-130 91-153 (275)
153 PRK15492 triosephosphate isome 44.5 48 0.001 34.9 6.0 51 72-128 85-135 (260)
154 cd06565 GH20_GcnA-like Glycosy 44.2 1.4E+02 0.003 31.9 9.6 66 66-134 15-87 (301)
155 cd06603 GH31_GANC_GANAB_alpha 43.0 40 0.00086 36.6 5.3 68 66-134 22-91 (339)
156 TIGR01361 DAHP_synth_Bsub phos 42.7 70 0.0015 33.6 6.9 87 32-127 7-96 (260)
157 cd06562 GH20_HexA_HexB-like Be 42.7 2.5E+02 0.0055 30.6 11.5 63 65-127 15-90 (348)
158 PRK12595 bifunctional 3-deoxy- 42.7 1.2E+02 0.0026 33.5 9.0 93 27-127 95-189 (360)
159 PF03170 BcsB: Bacterial cellu 42.2 92 0.002 36.5 8.6 51 510-560 62-115 (605)
160 cd06599 GH31_glycosidase_Aec37 42.1 55 0.0012 35.2 6.2 66 67-132 28-98 (317)
161 cd06600 GH31_MGAM-like This fa 41.2 44 0.00096 35.9 5.3 73 60-133 13-90 (317)
162 PRK14567 triosephosphate isome 41.2 59 0.0013 34.1 6.0 50 73-128 77-126 (253)
163 PLN02561 triosephosphate isome 41.1 58 0.0013 34.2 6.0 51 72-128 79-129 (253)
164 PRK13396 3-deoxy-7-phosphohept 41.0 1.7E+02 0.0036 32.3 9.7 95 26-127 71-172 (352)
165 PLN02826 dihydroorotate dehydr 39.8 5.9E+02 0.013 28.6 14.5 59 55-117 188-249 (409)
166 PLN02784 alpha-amylase 39.8 67 0.0014 39.3 6.9 56 71-127 524-588 (894)
167 PRK13962 bifunctional phosphog 39.5 1.1E+02 0.0024 36.5 8.5 51 72-128 472-522 (645)
168 PLN02429 triosephosphate isome 39.2 51 0.0011 35.7 5.3 50 73-128 139-188 (315)
169 cd06601 GH31_lyase_GLase GLase 38.5 1.3E+02 0.0029 32.6 8.5 72 60-132 13-89 (332)
170 COG1306 Uncharacterized conser 37.7 66 0.0014 34.6 5.7 62 66-127 75-144 (400)
171 PF01261 AP_endonuc_2: Xylose 37.5 37 0.00079 32.8 3.7 64 67-131 70-136 (213)
172 cd06416 GH25_Lys1-like Lys-1 i 37.0 75 0.0016 31.4 5.9 89 56-147 54-157 (196)
173 smart00758 PA14 domain in bact 37.0 1.3E+02 0.0028 27.4 7.2 65 481-554 46-111 (136)
174 PRK09267 flavodoxin FldA; Vali 37.0 2.9E+02 0.0063 26.3 9.9 111 7-124 6-117 (169)
175 PF10566 Glyco_hydro_97: Glyco 37.0 1.1E+02 0.0023 32.6 7.2 115 66-188 30-160 (273)
176 cd06597 GH31_transferase_CtsY 36.9 70 0.0015 34.8 6.1 73 60-132 13-110 (340)
177 PRK08645 bifunctional homocyst 36.8 97 0.0021 36.6 7.6 110 51-175 461-578 (612)
178 cd06604 GH31_glucosidase_II_Ma 36.6 59 0.0013 35.2 5.5 73 60-133 13-90 (339)
179 PF02228 Gag_p19: Major core p 36.3 19 0.00041 30.9 1.2 36 66-118 20-55 (92)
180 PRK13210 putative L-xylulose 5 36.1 56 0.0012 33.8 5.0 60 68-128 94-154 (284)
181 COG1523 PulA Type II secretory 36.0 58 0.0013 39.0 5.6 55 73-127 205-285 (697)
182 PRK09997 hydroxypyruvate isome 35.8 53 0.0012 33.7 4.8 60 68-127 85-144 (258)
183 COG2876 AroA 3-deoxy-D-arabino 35.7 2.1E+02 0.0045 30.4 8.9 58 66-127 57-116 (286)
184 COG5520 O-Glycosyl hydrolase [ 34.8 3.1E+02 0.0068 30.4 10.3 86 116-222 111-206 (433)
185 cd06595 GH31_xylosidase_XylS-l 34.8 79 0.0017 33.5 6.0 66 66-131 23-98 (292)
186 cd06563 GH20_chitobiase-like T 34.4 1.8E+02 0.0039 31.8 8.8 60 65-127 15-106 (357)
187 TIGR03234 OH-pyruv-isom hydrox 34.0 56 0.0012 33.4 4.6 60 68-127 84-143 (254)
188 PRK05265 pyridoxine 5'-phospha 34.0 62 0.0013 33.7 4.7 46 70-133 115-161 (239)
189 COG0149 TpiA Triosephosphate i 33.5 90 0.0019 32.7 5.9 72 50-128 58-129 (251)
190 COG0366 AmyA Glycosidases [Car 33.3 82 0.0018 35.2 6.1 56 72-127 33-97 (505)
191 cd04882 ACT_Bt0572_2 C-termina 32.8 81 0.0018 24.5 4.4 55 67-123 10-64 (65)
192 PTZ00372 endonuclease 4-like p 32.4 2.6E+02 0.0056 31.5 9.6 85 44-129 149-241 (413)
193 PRK12331 oxaloacetate decarbox 32.0 98 0.0021 35.2 6.4 56 60-127 88-143 (448)
194 PF01055 Glyco_hydro_31: Glyco 31.9 89 0.0019 34.9 6.1 69 66-135 41-111 (441)
195 PF11008 DUF2846: Protein of u 31.9 86 0.0019 28.5 4.9 37 511-554 41-77 (117)
196 PF14701 hDGE_amylase: glucano 31.9 1.6E+02 0.0035 33.2 7.9 97 61-163 13-128 (423)
197 COG1735 Php Predicted metal-de 31.6 1.8E+02 0.0039 31.5 7.8 158 33-232 12-173 (316)
198 TIGR00587 nfo apurinic endonuc 31.2 2.6E+02 0.0055 29.2 9.0 84 70-175 13-98 (274)
199 cd06547 GH85_ENGase Endo-beta- 30.8 63 0.0014 35.3 4.5 115 84-229 32-148 (339)
200 PF02837 Glyco_hydro_2_N: Glyc 30.7 54 0.0012 31.1 3.6 23 626-648 66-90 (167)
201 KOG3833 Uncharacterized conser 30.3 57 0.0012 35.2 3.9 53 69-127 444-499 (505)
202 cd00003 PNPsynthase Pyridoxine 30.1 71 0.0015 33.1 4.4 49 68-134 110-159 (234)
203 COG0156 BioF 7-keto-8-aminopel 30.0 48 0.001 36.9 3.5 88 22-126 114-207 (388)
204 PRK09432 metF 5,10-methylenete 30.0 1.3E+02 0.0028 32.2 6.6 88 73-176 168-266 (296)
205 TIGR00433 bioB biotin syntheta 29.2 88 0.0019 32.8 5.2 51 71-125 123-176 (296)
206 PRK06703 flavodoxin; Provision 29.1 3.5E+02 0.0076 25.2 8.8 103 48-175 46-148 (151)
207 PRK11114 cellulose synthase re 29.0 1.8E+02 0.0038 35.4 8.2 48 510-557 114-165 (756)
208 cd01299 Met_dep_hydrolase_A Me 28.9 1.2E+02 0.0025 32.3 6.2 61 66-127 118-180 (342)
209 cd00544 CobU Adenosylcobinamid 28.3 4.1E+02 0.0089 25.8 9.3 48 163-218 101-148 (169)
210 KOG4039 Serine/threonine kinas 28.2 95 0.0021 31.2 4.7 73 62-139 103-180 (238)
211 PLN02450 1-aminocyclopropane-1 28.1 1.8E+02 0.0039 32.9 7.8 59 64-126 172-230 (468)
212 PF08306 Glyco_hydro_98M: Glyc 27.8 47 0.001 35.9 2.8 60 54-124 104-170 (324)
213 COG1891 Uncharacterized protei 27.8 23 0.00049 35.2 0.4 65 54-126 117-186 (235)
214 PRK13125 trpA tryptophan synth 27.7 1.1E+02 0.0023 31.6 5.4 48 71-129 91-138 (244)
215 PTZ00372 endonuclease 4-like p 27.6 2.7E+02 0.0059 31.4 8.8 80 70-175 143-228 (413)
216 PLN03036 glutamine synthetase; 27.3 1.6E+02 0.0035 33.3 7.0 65 70-140 232-308 (432)
217 PF01372 Melittin: Melittin; 27.1 31 0.00067 23.1 0.8 19 13-31 2-20 (26)
218 PRK04302 triosephosphate isome 26.9 1.3E+02 0.0029 30.4 5.8 60 60-129 62-123 (223)
219 PLN02231 alanine transaminase 26.9 3E+02 0.0066 31.9 9.4 60 63-126 251-310 (534)
220 cd06418 GH25_BacA-like BacA is 26.8 3.8E+02 0.0083 27.2 9.1 91 65-177 49-140 (212)
221 COG3684 LacD Tagatose-1,6-bisp 26.7 66 0.0014 33.9 3.5 52 73-127 116-167 (306)
222 TIGR00676 fadh2 5,10-methylene 26.6 2.4E+02 0.0053 29.6 7.9 106 53-175 125-246 (272)
223 PLN02607 1-aminocyclopropane-1 26.5 2.7E+02 0.0058 31.4 8.7 60 63-126 180-239 (447)
224 KOG0622 Ornithine decarboxylas 26.4 1.1E+02 0.0024 34.3 5.3 63 65-128 190-253 (448)
225 TIGR01698 PUNP purine nucleoti 26.2 94 0.002 32.3 4.6 41 47-87 47-88 (237)
226 PF04566 RNA_pol_Rpb2_4: RNA p 25.7 56 0.0012 26.8 2.3 13 515-527 1-13 (63)
227 PF07488 Glyco_hydro_67M: Glyc 25.7 5.6E+02 0.012 27.8 10.2 140 65-227 54-193 (328)
228 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.5 1.7E+02 0.0037 30.8 6.5 50 65-126 88-137 (275)
229 PF09587 PGA_cap: Bacterial ca 24.9 4.3E+02 0.0093 27.1 9.3 80 44-131 122-227 (250)
230 PRK10966 exonuclease subunit S 24.8 5.3E+02 0.011 28.8 10.5 84 53-149 42-135 (407)
231 TIGR00559 pdxJ pyridoxine 5'-p 24.8 1E+02 0.0022 32.0 4.4 47 69-133 111-158 (237)
232 COG2179 Predicted hydrolase of 24.7 1.4E+02 0.0031 29.5 5.2 45 73-126 19-68 (175)
233 COG3320 Putative dehydrogenase 24.5 39 0.00084 37.4 1.5 36 110-146 176-214 (382)
234 TIGR00542 hxl6Piso_put hexulos 24.4 1.2E+02 0.0025 31.5 5.0 55 69-127 95-153 (279)
235 PRK08227 autoinducer 2 aldolas 24.4 86 0.0019 33.1 3.9 50 70-125 96-145 (264)
236 PF07755 DUF1611: Protein of u 24.2 55 0.0012 35.2 2.5 61 52-127 34-95 (301)
237 PRK09250 fructose-bisphosphate 24.0 1E+02 0.0022 33.9 4.4 49 73-127 151-199 (348)
238 cd00019 AP2Ec AP endonuclease 23.9 81 0.0018 32.7 3.7 58 68-129 85-145 (279)
239 KOG0259 Tyrosine aminotransfer 23.8 84 0.0018 34.9 3.8 98 20-126 139-238 (447)
240 PRK12399 tagatose 1,6-diphosph 23.7 1E+02 0.0022 33.4 4.4 99 27-127 53-162 (324)
241 PRK14040 oxaloacetate decarbox 23.6 1.4E+02 0.003 35.3 5.8 54 60-125 89-142 (593)
242 PF00282 Pyridoxal_deC: Pyrido 23.5 1.3E+02 0.0028 33.2 5.3 71 49-126 139-230 (373)
243 PRK08883 ribulose-phosphate 3- 23.3 1.7E+02 0.0038 29.8 5.9 53 59-128 62-114 (220)
244 PRK14581 hmsF outer membrane N 22.6 1.5E+02 0.0032 35.5 5.9 117 9-125 4-137 (672)
245 CHL00200 trpA tryptophan synth 22.5 1.6E+02 0.0036 30.9 5.6 46 70-129 108-153 (263)
246 KOG0470 1,4-alpha-glucan branc 22.2 98 0.0021 37.0 4.2 57 71-127 258-331 (757)
247 PF08924 DUF1906: Domain of un 22.1 3.2E+02 0.0069 25.7 7.0 89 66-176 36-127 (136)
248 PF00120 Gln-synt_C: Glutamine 22.1 1.4E+02 0.0031 30.9 5.1 60 67-131 68-139 (259)
249 cd02871 GH18_chitinase_D-like 22.1 3.7E+02 0.0081 28.7 8.4 87 107-222 60-146 (312)
250 TIGR03128 RuMP_HxlA 3-hexulose 22.1 2E+02 0.0043 28.4 5.9 41 73-126 68-108 (206)
251 COG0167 PyrD Dihydroorotate de 22.1 1E+03 0.022 25.8 11.5 128 66-233 107-250 (310)
252 cd06564 GH20_DspB_LnbB-like Gl 22.0 3.4E+02 0.0073 29.2 8.1 143 66-225 15-196 (326)
253 cd06570 GH20_chitobiase-like_1 21.5 1.9E+02 0.0042 31.1 6.1 63 65-127 15-88 (311)
254 PLN02284 glutamine synthetase 21.5 2.6E+02 0.0057 30.7 7.2 60 74-139 176-247 (354)
255 TIGR00539 hemN_rel putative ox 21.2 1.3E+02 0.0028 32.9 4.7 48 71-122 100-151 (360)
256 PRK01060 endonuclease IV; Prov 21.1 4.8E+02 0.011 26.8 8.9 62 66-128 45-111 (281)
257 PF03422 CBM_6: Carbohydrate b 21.1 2.7E+02 0.006 24.8 6.2 74 478-557 31-112 (125)
258 PF00728 Glyco_hydro_20: Glyco 20.8 1.4E+02 0.0031 31.9 4.9 61 66-126 16-92 (351)
259 cd04883 ACT_AcuB C-terminal AC 20.8 3E+02 0.0064 21.9 5.8 56 67-124 12-69 (72)
260 PRK09860 putative alcohol dehy 20.7 2.4E+02 0.0051 31.2 6.7 65 51-128 32-96 (383)
261 cd06569 GH20_Sm-chitobiase-lik 20.7 2.2E+02 0.0047 32.3 6.5 73 42-127 6-117 (445)
262 cd02848 Chitinase_N_term Chiti 20.5 4.2E+02 0.0092 24.2 7.0 47 507-556 45-91 (106)
263 cd04726 KGPDC_HPS 3-Keto-L-gul 20.5 2.3E+02 0.0049 27.8 5.9 45 72-129 68-113 (202)
264 cd06594 GH31_glucosidase_YihQ 20.3 2.6E+02 0.0057 30.1 6.8 68 66-133 21-97 (317)
265 PF08821 CGGC: CGGC domain; I 20.2 2.5E+02 0.0055 25.5 5.6 60 58-126 42-105 (107)
266 cd03334 Fab1_TCP TCP-1 like do 20.0 3.6E+02 0.0078 28.2 7.6 61 51-128 87-160 (261)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.7e-165 Score=1402.38 Aligned_cols=633 Identities=80% Similarity=1.361 Sum_probs=588.8
Q ss_pred chhHHHHHHHHHhh-cccccccceeEEEecCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCC
Q 006349 15 ANVKVLMLVLLSFC-SWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG 93 (649)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~ 93 (649)
.-|..+.|.|+-|+ |--......+|+||+++|+|||+|++|+||+|||||++|++|+|+|+||||+|+|||+||||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~ 84 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG 84 (840)
T ss_pred ceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 33444444444443 33445556799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHH
Q 006349 94 HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSM 173 (649)
Q Consensus 94 hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~ 173 (649)
|||+||+|||+|++||++||++|+++||||||||||||||||++||+|.||+++|+|++||+||+|+++|++|+++|+++
T Consensus 85 HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~ 164 (840)
T PLN03059 85 HEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDM 164 (840)
T ss_pred cCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEecCCCCCCCccccCCCccccccCC
Q 006349 174 MKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVP 253 (649)
Q Consensus 174 i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (649)
|+++++++++||||||+|||||||++.+.++.++++||+||+++++++|++|||+||++.+++++++++|||.+|+.|.+
T Consensus 165 l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~ 244 (840)
T PLN03059 165 MKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKP 244 (840)
T ss_pred HhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhccc
Confidence 99889999999999999999999998777778899999999999999999999999999888889999999999999998
Q ss_pred CCCCCCccccccccccccccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCC-ccccccCCCCCCCCC
Q 006349 254 NQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEY 332 (649)
Q Consensus 254 ~~p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDy~Apl~E~ 332 (649)
.++.+|+||||||+|||++||+++++|+++|++++++++|++|+|++||||||||||||||+|+ +++|||||||||+|+
T Consensus 245 ~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~ 324 (840)
T PLN03059 245 NKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEY 324 (840)
T ss_pred CCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccc
Confidence 8888999999999999999999999999999999999999999998899999999999999998 699999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCcccCCCCccccCCCcceeEEeecCCCceeEEEeecCCCceeEEEECCceeecCCcee
Q 006349 333 GLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSI 412 (649)
Q Consensus 333 G~~~~pky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~~p~~sv 412 (649)
|++++|||.+||++|++++.++++|+..+|....+|+++|+++|+..+ .|++|+.|++++.+++|+|+|++|.||+|||
T Consensus 325 G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Sv 403 (840)
T PLN03059 325 GLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSV 403 (840)
T ss_pred cCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccce
Confidence 999778999999999999999998998888888999999999999776 7999999999999999999999999999999
Q ss_pred EecCCCCceeeecccccccccceeeeeccccccccccccc-ccCCCCCCccccCchhhhhcCCCCCccEEEEEEEeecCC
Q 006349 413 SVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEE-TASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDS 491 (649)
Q Consensus 413 ~il~~~~~~lf~t~~v~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~~Eqlg~t~d~~GyvWYrt~v~l~~ 491 (649)
||||||+++||||+++++|++.+.+++....+.|++++|+ .+.+. +.+++..+++||+++|+|.+||+||||+|.++.
T Consensus 404 silpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~-~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 404 SILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYT-DDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred eecccccceeeeccccccccceeecccccccccceeeccccccccc-CCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 9999999999999999999888766666556799999999 44444 567888899999999999999999999999877
Q ss_pred CcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeecCCccccccccccccc
Q 006349 492 NEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAG 571 (649)
Q Consensus 492 ~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~Gr~NyG~~~e~~~kG 571 (649)
++...+.+.+++|+|.+++|++||||||+++|+.++......+.++.++.|+.|.|+|+||||||||+|||++||++.||
T Consensus 483 ~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kG 562 (840)
T PLN03059 483 DEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAG 562 (840)
T ss_pred CccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccc
Confidence 65433567789999999999999999999999999988788899998899999999999999999999999999999999
Q ss_pred eecceEEeccCCccccCCCCCceeeeccccccccccccCCCCCcccccCCcCCCCCCceEEEEEeeCCCCCCceeecC
Q 006349 572 VLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPVLGATGLDI 649 (649)
Q Consensus 572 I~g~V~l~g~~~g~idLs~~~W~ykvgl~Ge~~~iy~~~~~~~v~W~~~~~~~~~~~ltWYKttF~~P~g~~pv~Ldl 649 (649)
|+|+|.|.++++|+.+|++.+|.|+++|.||.++||++++..++.|.+.+..++++|+||||++|++|+|+|||+|||
T Consensus 563 I~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm 640 (840)
T PLN03059 563 VLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDM 640 (840)
T ss_pred ccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEec
Confidence 999999999988899999999999999999999999988888999988776678889999999999999999999998
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-138 Score=1136.93 Aligned_cols=559 Identities=60% Similarity=1.074 Sum_probs=527.1
Q ss_pred cceeEEEecCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHH
Q 006349 35 VKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIK 114 (649)
Q Consensus 35 ~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~ 114 (649)
....|+||+++|.+||+|++++||+|||+|++|++|+++|+|+|++|+|+|+||||||.|||.||+|||+|+.||++||+
T Consensus 16 ~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFik 95 (649)
T KOG0496|consen 16 SSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIK 95 (649)
T ss_pred ceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccc
Q 006349 115 LVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (649)
Q Consensus 115 ~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIEN 194 (649)
+|++.||||+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|++++| +|+++|||||||+||||
T Consensus 96 l~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIEN 173 (649)
T KOG0496|consen 96 LIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIEN 173 (649)
T ss_pred HHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEecCCCCCCCccccCCCccc-cccC-CCCCCCCccccccccccccc
Q 006349 195 EFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTE 272 (649)
Q Consensus 195 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~ 272 (649)
|||.+...+++.++.|++|-+.++...+.+|||+||.+.++|++++++|||.+| +.|. +++|++|+||||+|+|||++
T Consensus 174 EYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~ 253 (649)
T KOG0496|consen 174 EYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTH 253 (649)
T ss_pred hhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhh
Confidence 999887778888999999999999999999999999999999999999999999 9997 99999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCccccccCCCCCCCCCCCCCchhHHHHHHHHHHHHh
Q 006349 273 FGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKL 352 (649)
Q Consensus 273 wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~ 352 (649)
||++++.|+++++++.+++++++|+|++||||||||||||+++|++.+|||||||||| |..++|||+|+|.+|..++.
T Consensus 254 wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 254 WGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred hCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hcCcccCCCCccccCCCcceeEEeecCCCceeEEEeecCCCceeEEEECCceeecCCceeEecCCCCceeeecccccccc
Q 006349 353 CEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQS 432 (649)
Q Consensus 353 ~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~~~~~~lf~t~~v~~~~ 432 (649)
|++.+..+++....+++.++ .|.+|+.|++......+.|++.+|.+|+||++|+|||++++|||+++..
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~---------~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~-- 400 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLRE---------ACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA-- 400 (649)
T ss_pred cCccccccCcccccccchhh---------HHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc--
Confidence 99999999877766665543 5999999999999999999999999999999999999999999998743
Q ss_pred cceeeeecccccccccccccccCCCCCCccccCchhhhhcCCCCCccEEEEEEEeecCCCcccccCCCCceEEEc-cccc
Q 006349 433 SQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGH 511 (649)
Q Consensus 433 ~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eqlg~t~d~~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~-~~~D 511 (649)
+|..+.||++ +|..++ ..|++.|++.++-+.++ ...|+|. +++|
T Consensus 401 ------------~~~~~~e~~~-------------~~~~~~---~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~ 445 (649)
T KOG0496|consen 401 ------------QWISFTEPIP-------------SEAVGQ---SFGGLLEQTNLTKDKSD-------TTSLKIPLSLGH 445 (649)
T ss_pred ------------ccccccCCCc-------------cccccC---cceEEEEEEeeccccCC-------CceEeecccccc
Confidence 2777778765 455555 67799999988765443 3578888 9999
Q ss_pred EEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeecCCccccccccccccceecceEEeccCCccccCCCC
Q 006349 512 ALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQ 591 (649)
Q Consensus 512 ~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~Gr~NyG~~~e~~~kGI~g~V~l~g~~~g~idLs~~ 591 (649)
++||||||+++|+.++......+.+..++.|++|.|+|+|||||+||+||| ++|.+.|||+|+|.|.++ +||+..
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999988778899999999999999999999999999999 899999999999999885 788888
Q ss_pred CceeeeccccccccccccCCCCCcccccCCcCCCCCCceEEEEEeeCCCCCCceeecC
Q 006349 592 KWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPVLGATGLDI 649 (649)
Q Consensus 592 ~W~ykvgl~Ge~~~iy~~~~~~~v~W~~~~~~~~~~~ltWYKttF~~P~g~~pv~Ldl 649 (649)
+|.|++++.||++.+|++.++++++|......+.++|+|||| +|++|+|++|++|||
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm 577 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDM 577 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEec
Confidence 999999999999999999999999999887777779999999 999999999999998
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4.9e-89 Score=723.61 Aligned_cols=296 Identities=43% Similarity=0.779 Sum_probs=230.8
Q ss_pred cEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 006349 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 45 ~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi 124 (649)
+|+|||||++|+|||+||+|+|+++|+++|+||||+|||||++|||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCC
Q 006349 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (649)
Q Consensus 125 lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~ 204 (649)
|||||||||||++||+|.||.+++++++||+|+.|++++++|+++|+++|+ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999943
Q ss_pred CChHHHHHHHHHHHhhcCCC-cceEEecCCC--------CCCCccccCCCccccc--------cCCCCCCCCcccccccc
Q 006349 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQDD--------APDPVINTCNGFYCEK--------FVPNQNYKPKMWTEAWT 267 (649)
Q Consensus 205 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~~--------~~~~~~~~~~g~~~~~--------~~~~~p~~P~~~~E~~~ 267 (649)
.++++||+.|++++++.+++ ++.++++... .++..+.+++++.|.+ ....+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 45899999999999999998 6667776531 2232344455555522 13557889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCcc-----ccccCCCCCCCCCCCCCchhHHH
Q 006349 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV-----ATSYDYDAPIDEYGLLNEPKWGH 342 (649)
Q Consensus 268 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~tSYDy~Apl~E~G~~~~pky~~ 342 (649)
|||++||++++.+++++++..+++++++| +++||||||||||||+++|+.. +|||||+|||+|+|+++ |||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 99999999999999999999999999999 5589999999999999998833 49999999999999995 99999
Q ss_pred HHHHHHH
Q 006349 343 LRDLHKA 349 (649)
Q Consensus 343 lr~l~~~ 349 (649)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=336.37 Aligned_cols=288 Identities=23% Similarity=0.334 Sum_probs=212.4
Q ss_pred EEEecCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCceecccchhHHHHHHHHH
Q 006349 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (649)
Q Consensus 39 v~~d~~~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~ 117 (649)
|++++..+++||+|++++||++||+|+|++.|.++|++||++|+|+|++ |+.|+.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4578899999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCcEEEeecCc-ccccccCCCCCCeeeccCCCeE---------eecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 006349 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIE---------FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (649)
Q Consensus 118 ~~GL~vilr~GP-yi~aEw~~GG~P~WL~~~p~~~---------~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpI 187 (649)
+.||+||||||| ..|.+|..+++|.||..++.-. +..+++.|++++++ |+++|+ ++.+.+||+|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 9999999999999998765422 23456678888777 455555 2235899999
Q ss_pred EEeccccccCCccccCCCChHHHHHHHHHHHhhc-CCCcceEEecCC-CCCC-CccccCC--------CccccccCCCCC
Q 006349 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQD-DAPD-PVINTCN--------GFYCEKFVPNQN 256 (649)
Q Consensus 188 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~~~-~~~~-~~~~~~~--------g~~~~~~~~~~p 256 (649)
|+||++||||++.+.|..|.+.+..||++.+-.. ..+-+|=+..-+ +..+ ..|.+.+ +.+ -++.....
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~-ld~~~f~~ 231 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLY-LDYRRFES 231 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccch-hhHhhhhh
Confidence 9999999999865556778899999999987321 122333211100 0000 0011111 111 01122222
Q ss_pred CC----Cccccccccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCceeeeeeeecCCCCC------CCCCC-------
Q 006349 257 YK----PKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG------- 317 (649)
Q Consensus 257 ~~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~------- 317 (649)
.+ +....|.+-+|| +.|..+.-... .+.-++.+++.|..... -||||+|+|++|+ +.+++
T Consensus 232 e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 232 EQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 22 556777888888 77665443333 33334556666666655 6999999999999 55543
Q ss_pred ----ccccccCCCCCCCCCCCCC
Q 006349 318 ----FVATSYDYDAPIDEYGLLN 336 (649)
Q Consensus 318 ----~~~tSYDy~Apl~E~G~~~ 336 (649)
...++|++.+.+.+.|..+
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred ccCCcchhhhhhccCCCCCcccc
Confidence 2689999999999999953
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.82 E-value=7e-20 Score=199.15 Aligned_cols=263 Identities=21% Similarity=0.273 Sum_probs=157.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC
Q 006349 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG 138 (649)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~G 138 (649)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .||++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67799999999999999 799999999999999999974 45
Q ss_pred CCCeeecc-CCCeEe----------------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccc
Q 006349 139 GFPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 201 (649)
Q Consensus 139 G~P~WL~~-~p~~~~----------------R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~ 201 (649)
..|.||.+ .|++.. ..++|.|++++++++++++++++ +++.||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~-------~~p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYG-------DHPAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT-------TTTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcc-------ccceEEEEEeccccCcCcC
Confidence 68999875 355421 23468899999999999887776 4568999999999986432
Q ss_pred cCCCChHHHHHHHHHHHhhc-------CCC-------------cceEEecCC------C---------------------
Q 006349 202 DIGAPGKAYAKWAAQMAVGL-------NTG-------------VPWVMCKQD------D--------------------- 234 (649)
Q Consensus 202 ~~~~~~~~y~~~l~~~~~~~-------g~~-------------vP~~~~~~~------~--------------------- 234 (649)
.+..+.++|.+||++++... |.. .|..+.... |
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345677889998887532 221 122111000 0
Q ss_pred --CCCCccccCC--C---------------------cccc--------c---------c-CCCCCCCCcccccccccccc
Q 006349 235 --APDPVINTCN--G---------------------FYCE--------K---------F-VPNQNYKPKMWTEAWTGWFT 271 (649)
Q Consensus 235 --~~~~~~~~~~--g---------------------~~~~--------~---------~-~~~~p~~P~~~~E~~~Gwf~ 271 (649)
.|+- .-+.| + .|.. . + +...+++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0100 00000 0 0110 0 0 01247899999999999 55
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCccccccCCCCCCCCCC-CCCchhHHHHHHHHHHH
Q 006349 272 EFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKAI 350 (649)
Q Consensus 272 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G-~~~~pky~~lr~l~~~i 350 (649)
.|+.......+..+....-..++.|+..+.|+-+ ....+|.-.. ..+.|+-+| .+ +++|.+++++...|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHHH
Confidence 6765555555666665555678899998888755 3333442221 136788889 66 68999999998877
Q ss_pred Hh
Q 006349 351 KL 352 (649)
Q Consensus 351 ~~ 352 (649)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 63
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.53 E-value=1.8e-13 Score=144.40 Aligned_cols=192 Identities=20% Similarity=0.263 Sum_probs=124.3
Q ss_pred EEEecCcEEECCEEEEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHH
Q 006349 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (649)
Q Consensus 39 v~~d~~~~~idG~p~~~~~G~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~f 112 (649)
|++.++.|+|||||++|.|...|... .+++.++++|++||++|+|+||+ +|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67889999999999999999999632 47889999999999999999999 455543 399
Q ss_pred HHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 006349 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (649)
Q Consensus 113 l~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QI 192 (649)
+++|+++||.|+..+.=.-++.|..-|.. .....++.+.+.+.+-++.++.+. .|+++||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~-------~NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRD-------RNHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHH-------TT-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcC-------cCcCchheeec
Confidence 99999999999987621122333321211 234567888877766666655544 47789999999
Q ss_pred ccccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEecCC-C-CCCC-ccccCCCccc-----cccC----C--CCCCC
Q 006349 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD-D-APDP-VINTCNGFYC-----EKFV----P--NQNYK 258 (649)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~-~-~~~~-~~~~~~g~~~-----~~~~----~--~~p~~ 258 (649)
.||-. ...+++.|.+++++.+.+.|+...... . ..+. ..+...+.|. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99993 467889999999999999987655541 1 1111 1111111111 1111 1 35889
Q ss_pred Ccccccccccccc
Q 006349 259 PKMWTEAWTGWFT 271 (649)
Q Consensus 259 P~~~~E~~~Gwf~ 271 (649)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999655444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.41 E-value=2.7e-11 Score=139.88 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=113.8
Q ss_pred ccceeEEEecCcEEECCEEEEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccch
Q 006349 34 FVKASVSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY 107 (649)
Q Consensus 34 ~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~ 107 (649)
.+=.+|++++..|+|||+|+++.|.+.|... .+++.|+.+|+.||++|+|+||+ .|-|.+
T Consensus 273 ~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~--------- 338 (604)
T PRK10150 273 FGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS--------- 338 (604)
T ss_pred eEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC---------
Confidence 3346688999999999999999999998532 46788999999999999999999 355533
Q ss_pred hHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec--------cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccc
Q 006349 108 DLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK--------YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKL 179 (649)
Q Consensus 108 dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~--------~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~ 179 (649)
.+|+++|.++||+|+....- + |+..|.. ..+....-..+|.+.++. .+.+.++|++
T Consensus 339 --~~~~~~cD~~GllV~~E~p~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~mv~r--- 402 (604)
T PRK10150 339 --EEMLDLADRHGIVVIDETPA--V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAH---LQAIRELIAR--- 402 (604)
T ss_pred --HHHHHHHHhcCcEEEEeccc--c------cccccccccccccccccccccccccchhHHHHH---HHHHHHHHHh---
Confidence 39999999999999987531 1 1111211 011111112334554443 3444555553
Q ss_pred ccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEec
Q 006349 180 FQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (649)
Q Consensus 180 ~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (649)
..|+++||||.|.||.... ......+++.|.+.+++.+.+.|...+.
T Consensus 403 -~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 403 -DKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred -ccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 4688999999999997531 1234578888999999999999886553
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.31 E-value=3.1e-11 Score=146.31 Aligned_cols=259 Identities=19% Similarity=0.199 Sum_probs=154.9
Q ss_pred eeEEEecCcEEECCEEEEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHH
Q 006349 37 ASVSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (649)
Q Consensus 37 ~~v~~d~~~~~idG~p~~~~~G~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~ 110 (649)
.+|+++++.|+|||+|+++.|...|... .+++.|+++|+.||++|+|+||+ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 5578888999999999999999988421 47889999999999999999999 3344445
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 006349 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (649)
Q Consensus 111 ~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~ 190 (649)
+|+++|.|+||+|+-.. |..|..|..-+ +...-+++|.+.+ .+.+++.+++++ .+|+++||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~---~~~~~~~~mV~R----drNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEK---VYVDRIVRHIHA----QKNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHH---HHHHHHHHHHHh----CCCCCEEEEE
Confidence 99999999999999886 33332221100 0011235666654 344555566663 3689999999
Q ss_pred ccccccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEecCCCCCCCccccCCCccc-----cccCCCCCCCCcccccc
Q 006349 191 QIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-----EKFVPNQNYKPKMWTEA 265 (649)
Q Consensus 191 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~p~~P~~~~E~ 265 (649)
-+.||-+. + . .++.+.+.+++.+.+.|+........ .+.+...-.|. +.+....+++|++.+|+
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~~~~~~~~--~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVHYEEDRDA--EVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEEeCCCcCc--cccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 99999762 2 2 23678888889998887643221111 11222221222 23333446799999998
Q ss_pred ccccccccCCCCCCCChHHHHHHHHH--HHHhCCce-----e---------eeeeeecCCCCCCCCCCccccccCCCCCC
Q 006349 266 WTGWFTEFGSAVPTRPAEDLVFSVAR--FIQSGGSF-----I---------NYYMYHGGTNFGRTSGGFVATSYDYDAPI 329 (649)
Q Consensus 266 ~~Gwf~~wG~~~~~~~~~~~~~~~~~--~l~~g~s~-----~---------n~YM~hGGTNfG~~~g~~~~tSYDy~Apl 329 (649)
-- .+|... ...++.-..+.+ .+ .|+-+ + .-|+.+||- ||-+. --.++--+.-+
T Consensus 514 ~h----amgn~~--g~~~~yw~~~~~~p~l-~GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~p---~~~~f~~~Glv 582 (1021)
T PRK10340 514 AH----AMGNGP--GGLTEYQNVFYKHDCI-QGHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDYP---NNYNFCIDGLI 582 (1021)
T ss_pred Hh----ccCCCC--CCHHHHHHHHHhCCce-eEEeeeecCcccccccCCCCCEEEEECCC-CCCCC---CCcCcccceeE
Confidence 31 122100 011222111111 00 01000 0 023345552 44321 11223334778
Q ss_pred CCCCCCCchhHHHHHHHHHHHH
Q 006349 330 DEYGLLNEPKWGHLRDLHKAIK 351 (649)
Q Consensus 330 ~E~G~~~~pky~~lr~l~~~i~ 351 (649)
+-+|.+ .|.|.++|.+.+-++
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceEE
Confidence 899998 599999998866543
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=141.41 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=110.1
Q ss_pred eeEEEecCcEEECCEEEEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHH
Q 006349 37 ASVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (649)
Q Consensus 37 ~~v~~d~~~~~idG~p~~~~~G~~Hy~------r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~ 110 (649)
.+|++++..|+|||+|+++.|...|.. +.+++.++++|+.||++|+|+||+ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 456778889999999999999999842 357889999999999999999999 4444455
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 006349 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (649)
Q Consensus 111 ~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~ 190 (649)
+|+++|.|+||+|+-...=..|+-+ |.. . -.+||.|.++ +.+++.+++++ .+|+++||||
T Consensus 398 ~fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~---~~~~~~~mV~R----drNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPA---MSERVTRMVQR----DRNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHH---HHHHHHHHHHh----CCCCCEEEEE
Confidence 9999999999999988531112211 110 0 1356777554 45556666663 3689999999
Q ss_pred ccccccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEec
Q 006349 191 QIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (649)
Q Consensus 191 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (649)
-+.||-+. +. ..+.+.+.+++.+.+.|.....
T Consensus 458 SlgNE~~~-----g~----~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----GA----NHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----Ch----hHHHHHHHHHhhCCCCcEEECC
Confidence 99999762 22 2456777888888888876653
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=2.3e-09 Score=126.08 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=95.9
Q ss_pred ccceeEEEecCcEEECCEEEEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccch
Q 006349 34 FVKASVSYDHKAVIINGQKRILISGSIHYPR-----S-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY 107 (649)
Q Consensus 34 ~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r-----~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~ 107 (649)
.+=.+|+++...|.|||||+++-|..-|.+- . ..+.-+++|+.||++|+|+||| . |-|..
T Consensus 281 iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~--------- 346 (808)
T COG3250 281 IGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS--------- 346 (808)
T ss_pred eccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC---------
Confidence 3346789999999999999999999999633 3 3444899999999999999999 2 66654
Q ss_pred hHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 006349 108 DLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (649)
Q Consensus 108 dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpI 187 (649)
.+|+++|.++||+||-.+ ..||.. +| +++.|++.+..=++++++.. +|+++|
T Consensus 347 --~~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~-------knHPSI 398 (808)
T COG3250 347 --EEFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERD-------RNHPSI 398 (808)
T ss_pred --HHHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhc-------cCCCcE
Confidence 499999999999999986 334432 22 77788777665555554443 578899
Q ss_pred EEeccccccCC
Q 006349 188 ILSQIENEFGP 198 (649)
Q Consensus 188 I~~QIENEyg~ 198 (649)
|||.+.||-|.
T Consensus 399 iiWs~gNE~~~ 409 (808)
T COG3250 399 IIWSLGNESGH 409 (808)
T ss_pred EEEeccccccC
Confidence 99999999873
No 11
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.99 E-value=2.8e-09 Score=102.64 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=77.4
Q ss_pred CCCCccEEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCc-cEEEEE
Q 006349 474 TADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLL 552 (649)
Q Consensus 474 t~d~~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~-N~L~IL 552 (649)
.....|+.|||++|++++.. +++...|.++.+++.+.|||||++||++.+...+..+.+ +-.|+.|. |+|+|+
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dI--t~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDI--TDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEEC--GGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeC--hhhccCCCCEEEEEE
Confidence 35578999999999998775 678899999999999999999999999988765544555 44689998 999999
Q ss_pred EeecCCcccccccc-ccccceecceEEec
Q 006349 553 STSVGLPNVGTHFE-KWNAGVLGPVTLKG 580 (649)
Q Consensus 553 ven~Gr~NyG~~~e-~~~kGI~g~V~l~g 580 (649)
|.+.....+-+.++ ...+||.++|.|..
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~~ 165 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLEA 165 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEEE
Confidence 99765333311222 35789999998853
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.94 E-value=1.6e-08 Score=104.26 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=107.7
Q ss_pred CCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-CCCCc-eecccchhHHHHHHHHHHcCcEEEee
Q 006349 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 49 dG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE-p~~G~-ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
+|+++.+.+-+.|... +..-++.++.||++|+|+||+.|.|...+ |.|+. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999322 22778999999999999999999995554 67764 77667779999999999999999987
Q ss_pred cCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCcccc--CC
Q 006349 127 IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--IG 204 (649)
Q Consensus 127 ~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~--~~ 204 (649)
+= + .|.|...... -...+...+....+++.|+.+++ +..+|++++|=||....... ..
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 52 2 1556322111 01222233444445555555554 44689999999999753210 00
Q ss_pred ----CChHHHHHHHHHHHhhcCCCcceEEe
Q 006349 205 ----APGKAYAKWAAQMAVGLNTGVPWVMC 230 (649)
Q Consensus 205 ----~~~~~y~~~l~~~~~~~g~~vP~~~~ 230 (649)
..-.++.+.+.+..|+.+.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 01134556666777888888776553
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.69 E-value=9.4e-08 Score=86.99 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=60.0
Q ss_pred hhhcCCCCCccEEEEEEEeecCCCcccccCCCCce-EEEc-ccccEEEEEECCEEEEEEE-CccCCCeeEEecceecCCC
Q 006349 469 EQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVY-GSLENPKLTFSKNVKLRPG 545 (649)
Q Consensus 469 Eqlg~t~d~~GyvWYrt~v~l~~~~~~~~~~~~~~-L~l~-~~~D~~~VfVNG~~VGt~~-~~~~~~~~~~~~~i~Lk~G 545 (649)
+..+.+++..|++|||++|+....+ .... |.+. +..++++|||||+++|+.. .......|.+|..+ |+.+
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~~ 97 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKYG 97 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTTC
T ss_pred eccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecCC
Confidence 3344556799999999999753322 1123 3343 5799999999999999988 44445779999865 7878
Q ss_pred ccEEEEEEeecCC
Q 006349 546 VNKISLLSTSVGL 558 (649)
Q Consensus 546 ~N~L~ILven~Gr 558 (649)
.|+|++|+.+||+
T Consensus 98 n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 98 NNVLVVLWDNMGH 110 (111)
T ss_dssp EEEEEEEEE-STT
T ss_pred CEEEEEEEeCCCC
Confidence 8899999999983
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.32 E-value=2.7e-06 Score=98.67 Aligned_cols=101 Identities=23% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCcc-EEEEEE
Q 006349 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVN-KISLLS 553 (649)
Q Consensus 475 ~d~~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N-~L~ILv 553 (649)
++..|..|||++|++++.. +++...|+++.++..+.|||||++||.+.+...+ |+++.+-.|+.|.| +|+|+|
T Consensus 61 ~~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~--f~~DIT~~l~~G~~n~L~V~v 134 (604)
T PRK10150 61 RNYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTP--FEADITPYVYAGKSVRITVCV 134 (604)
T ss_pred cCCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCccc--eEEeCchhccCCCceEEEEEE
Confidence 4568999999999998664 6788999999999999999999999999887655 44444445788865 999999
Q ss_pred eecCCcc---cccc-------------cc-ccccceecceEEecc
Q 006349 554 TSVGLPN---VGTH-------------FE-KWNAGVLGPVTLKGL 581 (649)
Q Consensus 554 en~Gr~N---yG~~-------------~e-~~~kGI~g~V~l~g~ 581 (649)
.|.-+.. .|.. .+ ....||.++|.|...
T Consensus 135 ~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 135 NNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred ecCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 7742110 1111 11 246799999998654
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.15 E-value=5.3e-06 Score=86.00 Aligned_cols=117 Identities=20% Similarity=0.324 Sum_probs=87.8
Q ss_pred CCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHH
Q 006349 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (649)
Q Consensus 91 Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i 170 (649)
|...||+||+|||+ .++++++.|+++||.| |..+-+ |-. ..|.|+...+ .+..++++.+|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 7999999999999998 322222 433 6899987533 345677888888888
Q ss_pred HHHHHhcccccccCCceEEeccccccCCccc------c-CCCChHHHHHHHHHHHhhcCCCcceEEecC
Q 006349 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW------D-IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (649)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QIENEyg~~~~------~-~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 232 (649)
+.+++ |.|..|+|=||.-+... . +...+.+|+...-+.+++.+.++.++.++-
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 87766 56899999999632210 0 112356899999999999999999988753
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.14 E-value=3.1e-05 Score=81.77 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=87.1
Q ss_pred ccceeEEEecCcEE--ECCEEEEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc
Q 006349 34 FVKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN 100 (649)
Q Consensus 34 ~~~~~v~~d~~~~~--idG~p~~~~~G~~Hy~r-----------~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ 100 (649)
..-..|++.++.|. .+|++|+|.|-.+.+.. ..++.|++++..||++|+||||+| ...|..
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~~-- 79 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPSK-- 79 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS--
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCCC--
Confidence 33456788888888 78999999988776522 356789999999999999999996 344544
Q ss_pred eecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCCh--hHHHHHHHHHHHHHHHHHhcc
Q 006349 101 YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAEK 178 (649)
Q Consensus 101 ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~--~y~~~~~~~~~~i~~~i~~~~ 178 (649)
|=++++++.++.|||||+..+. |...+-..+| .|-...-.-+.++++.++++
T Consensus 80 -------nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y- 133 (314)
T PF03198_consen 80 -------NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY- 133 (314)
T ss_dssp ---------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT--
T ss_pred -------CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC-
Confidence 6689999999999999999753 2222333444 44333333345566666633
Q ss_pred cccccCCceEEeccccccCCccccC--CCChHHHHHHHHHHHhhcCC-Ccce
Q 006349 179 LFQTQGGPIILSQIENEFGPVEWDI--GAPGKAYAKWAAQMAVGLNT-GVPW 227 (649)
Q Consensus 179 ~~~~~gGpII~~QIENEyg~~~~~~--~~~~~~y~~~l~~~~~~~g~-~vP~ 227 (649)
.++++.-+.||--.-.... .+.-|+..+-+|+-.++.+. .+|+
T Consensus 134 ------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4899999999985421100 11234555555665666665 4565
No 17
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.10 E-value=1.6e-05 Score=97.22 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=71.9
Q ss_pred ccEEEEEEEeecCCCcccccCCC-CceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeec
Q 006349 478 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (649)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~~~-~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~ 556 (649)
.+..|||++|+++++. .++ +..|+++.+...+.|||||++||.+.+...+ |+++..-.|+.|.|+|+|+|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~p--fefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLP--AEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCCce--EEEEChhhhcCCccEEEEEEEec
Confidence 4778999999998764 444 6899999999999999999999998876654 44444445889999999999543
Q ss_pred CCcccccccc-ccccceecceEEecc
Q 006349 557 GLPNVGTHFE-KWNAGVLGPVTLKGL 581 (649)
Q Consensus 557 Gr~NyG~~~e-~~~kGI~g~V~l~g~ 581 (649)
..-+|-.-.+ ....||.++|.|...
T Consensus 193 sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 SDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred CCCCccccCCceeeccccceEEEEEc
Confidence 2112211111 235699999888654
No 18
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.02 E-value=1.7e-05 Score=96.96 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=74.6
Q ss_pred ccEEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeecC
Q 006349 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (649)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~G 557 (649)
.+..|||++|++++.. ++++..|+++.+...+.|||||++||.+.+...+..|.+. -.|+.|+|+|+|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT--~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDIS--AMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcc--hhhCCCccEEEEEEEecC
Confidence 4678999999998775 6788999999999999999999999998887655555554 358899999999997543
Q ss_pred Ccccccccc-ccccceecceEEecc
Q 006349 558 LPNVGTHFE-KWNAGVLGPVTLKGL 581 (649)
Q Consensus 558 r~NyG~~~e-~~~kGI~g~V~l~g~ 581 (649)
.-.|-+-.+ ....||.++|.|...
T Consensus 182 d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCCccccCCccccccccceEEEEEe
Confidence 222211111 124799999888754
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.83 E-value=4.1e-05 Score=85.38 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=80.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
..|+++|+.||++|+|++|+-|.|...+|. +|++|.+|....+++|+.|.++||.+|+-.=. -.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 458999999999999999999999999999 79999999999999999999999998876421 248999976
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
..+- .++...++..+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5443 346667777778777777776
No 20
>PLN02705 beta-amylase
Probab=97.72 E-value=6.7e-05 Score=84.46 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEE--eecCcccccccCCC----
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG---- 138 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~~a~~~GL~vi--lr~GPyi~aEw~~G---- 138 (649)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|++.||++. |.+ --||- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 3455788999999999999999999999998 799999997 6688999999999964 554 34554 222
Q ss_pred -CCCeeecc----CCCeE
Q 006349 139 -GFPVWLKY----VPGIE 151 (649)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (649)
-||.|+.+ +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999985 46664
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.68 E-value=9.6e-05 Score=82.66 Aligned_cols=83 Identities=22% Similarity=0.440 Sum_probs=65.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~G-----G 139 (649)
.++.-+..|+++|++|++.|.+-|-|...|. .|++|||+| ..+++++|++.||++..-..=.-||- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556789999999999999999999999998 899999997 66889999999999643322234544 222 3
Q ss_pred CCeeecc----CCCeEe
Q 006349 140 FPVWLKY----VPGIEF 152 (649)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (649)
+|.|+.+ +|+|.+
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999975 566643
No 22
>PLN02905 beta-amylase
Probab=97.68 E-value=9.2e-05 Score=83.59 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=63.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----CC
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----GF 140 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~G-----G~ 140 (649)
++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|++.||++..-..=.-||- +-| -|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPL 360 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPL 360 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 345678999999999999999999999998 799999996 66889999999999643332234554 222 38
Q ss_pred Ceeecc----CCCeEe
Q 006349 141 PVWLKY----VPGIEF 152 (649)
Q Consensus 141 P~WL~~----~p~~~~ 152 (649)
|.|+.+ +|+|.+
T Consensus 361 P~WV~e~g~~nPDiff 376 (702)
T PLN02905 361 PHWVAEIGRSNPDIFF 376 (702)
T ss_pred CHHHHHhhhcCCCceE
Confidence 999985 566643
No 23
>PLN02801 beta-amylase
Probab=97.68 E-value=9.4e-05 Score=82.15 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~G-----G 139 (649)
.++.-+..|+++|++|+..|.+-|-|...|. .|++|||+| ..+++++++++||++..-..=.-||- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566789999999999999999999999997 699999996 66889999999999643322234544 112 3
Q ss_pred CCeeecc----CCCeE
Q 006349 140 FPVWLKY----VPGIE 151 (649)
Q Consensus 140 ~P~WL~~----~p~~~ 151 (649)
+|.|+.+ +|++.
T Consensus 111 LP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 111 IPQWVRDVGDSDPDIF 126 (517)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999985 46663
No 24
>PLN02161 beta-amylase
Probab=97.66 E-value=0.00018 Score=79.83 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~G-----G 139 (649)
.++.-+..|+++|++|++.|.+-|-|...|. .|++|||+| ..++++++++.||++..-..=--|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3445688999999999999999999999998 899999996 66889999999999653332244443 112 2
Q ss_pred CCeeecc----CCCeEe
Q 006349 140 FPVWLKY----VPGIEF 152 (649)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (649)
+|.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999985 567644
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.64 E-value=0.0002 Score=75.82 Aligned_cols=224 Identities=20% Similarity=0.296 Sum_probs=110.7
Q ss_pred cCcEE-ECCEEEEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEcee--CCCC-C-------C----CCCceecc
Q 006349 43 HKAVI-INGQKRILISGSIHY---PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----TQGNYYFQ 104 (649)
Q Consensus 43 ~~~~~-idG~p~~~~~G~~Hy---~r~~~~~W~~~l~k~Ka~G~N~V~~yv~--Wn~h-E-------p----~~G~ydf~ 104 (649)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++-|+ |... . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 8999999998 4444 3567899999999999999999999776 4322 1 1 12236776
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEee---cCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 006349 105 DR-----YDLVRFIKLVQQAGLYVHLR---IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (649)
Q Consensus 105 g~-----~dl~~fl~~a~~~GL~vilr---~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~ 176 (649)
.. ..+++.|+.|.+.||.+.|- -+||.-+-|-.| | ..| =.+..++|.+.|+.+++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 58999999999999997543 234444445433 1 111 136788999999999984
Q ss_pred cccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCCcce-EEecCC-CCC-----CCcccc--C-CCc
Q 006349 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW-VMCKQD-DAP-----DPVINT--C-NGF 246 (649)
Q Consensus 177 ~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~-~~~~~~-~~~-----~~~~~~--~-~g~ 246 (649)
.+ +|| |-|-||+ . ......++.+.+.+..++.+..-+. ++..+. ..+ .+-++. . .|-
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 42 455 7799999 1 1234567777788887777654433 222221 111 111111 1 111
Q ss_pred cc---c-------ccC-CCCCCCCcccccc-cccccc-ccCCCCCCCChHHHHHHHHHHHHhCC
Q 006349 247 YC---E-------KFV-PNQNYKPKMWTEA-WTGWFT-EFGSAVPTRPAEDLVFSVARFIQSGG 297 (649)
Q Consensus 247 ~~---~-------~~~-~~~p~~P~~~~E~-~~Gwf~-~wG~~~~~~~~~~~~~~~~~~l~~g~ 297 (649)
.. + .+. ...|.+|++..|- |.|--. .|+ .....+++++...+=.-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~-~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWG-YNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS--TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCc-ccCCCCHHHHHHHHHHHHhcCC
Confidence 11 0 111 4578999999994 445433 333 2334567776654333444565
No 26
>PLN02803 beta-amylase
Probab=97.63 E-value=0.00012 Score=81.54 Aligned_cols=83 Identities=18% Similarity=0.441 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp-~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~G-----G 139 (649)
.++.-+..|+++|++|++.|.+-|-|...|. .|++|||+| ..+++++|++.||++..-..=--||- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3455678999999999999999999999998 599999997 66889999999999643322233544 212 3
Q ss_pred CCeeecc----CCCeEe
Q 006349 140 FPVWLKY----VPGIEF 152 (649)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (649)
+|.|+.+ +|+|.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 577643
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.28 E-value=0.00028 Score=77.06 Aligned_cols=115 Identities=16% Similarity=0.253 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc----cCCCCCCee
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 143 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE----w~~GG~P~W 143 (649)
.-+..|+++|++|+..|.+.|-|...|.. |++|||+| .+++.++|++.||++..-..=--|+- .-+=-+|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45778999999999999999999999997 99999996 67899999999999754332233432 111137999
Q ss_pred ecc---CCCeEeecC---------ChhH----HHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 006349 144 LKY---VPGIEFRTD---------NGPF----KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (649)
Q Consensus 144 L~~---~p~~~~R~~---------~~~y----~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QI 192 (649)
+.+ ..+|.+... .|.+ ++.-+.|++.....++ ++. +.|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 124422110 1111 4444556666666665 332 67888887
No 28
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.06 E-value=0.0017 Score=70.09 Aligned_cols=141 Identities=21% Similarity=0.318 Sum_probs=79.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCC-CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCC
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPG 149 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~-G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~ 149 (649)
+|.++.||+.|+|.||.=| |+ .|.. |..|.+ +..++.+-|+++||.|+|.+- | -.-|.--|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCC----CCCCc
Confidence 6899999999999999977 54 4554 666665 677777778899999999862 1 111221110 00111
Q ss_pred eEeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccccc--CCccccCCC--ChHH---HHHHHHHHHhhc
Q 006349 150 IEFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF--GPVEWDIGA--PGKA---YAKWAAQMAVGL 221 (649)
Q Consensus 150 ~~~R~-~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEy--g~~~~~~~~--~~~~---y~~~l~~~~~~~ 221 (649)
- -+. +-..-.+++..|.+.++..|++ +|=.+=||||.||. |.... .+. .-.. ++..-.+.+|+.
T Consensus 95 a-W~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlwp-~g~~~~~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 95 A-WANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLWP-DGKPSNWDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp T-CTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTBT-TTCTT-HHHHHHHHHHHHHHHHTH
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccCc-CCCccCHHHHHHHHHHHHHHHHhc
Confidence 0 011 2345678999999999999994 45578899999997 43321 121 1122 333334566666
Q ss_pred CCCcce-EEec
Q 006349 222 NTGVPW-VMCK 231 (649)
Q Consensus 222 g~~vP~-~~~~ 231 (649)
+.++.+ ++++
T Consensus 167 ~p~~kV~lH~~ 177 (332)
T PF07745_consen 167 DPNIKVMLHLA 177 (332)
T ss_dssp SSTSEEEEEES
T ss_pred CCCCcEEEEEC
Confidence 655544 3444
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.0026 Score=67.41 Aligned_cols=133 Identities=19% Similarity=0.326 Sum_probs=99.1
Q ss_pred HHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCC
Q 006349 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (649)
Q Consensus 77 ~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~ 156 (649)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+- -=+.+ |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 4444444444455699999999999999 47899999999999753 11122 433 6899997643 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCC----cc---ccCCCChHHHHHHHHHHHhhcCCCcceEE
Q 006349 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP----VE---WDIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (649)
Q Consensus 157 ~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 229 (649)
+..++.+++++..++.+.+ |.|+.|-|=||-=. +. +..+..+.+|+++.-+.|++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999887 45999999999732 11 11224578999999999999998888888
Q ss_pred ecC
Q 006349 230 CKQ 232 (649)
Q Consensus 230 ~~~ 232 (649)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 775
No 30
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.98 E-value=0.00078 Score=75.79 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 145 (649)
..|+++|+.||++|+|+.+.-+.|...+|. +|++|-+|....+++|+.+.++||..++-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 358999999999999999999999999999 699999999999999999999999977653 2345899998
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 006349 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (649)
Q Consensus 146 ~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~ 176 (649)
+.-+- .++...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74432 3466777778888888887773
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.95 E-value=0.00077 Score=72.45 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=107.8
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--eeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccc
Q 006349 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 55 ~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~y--v~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~ 132 (649)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888887765442 3444444569998875 5599999999999999 79999999999999974221 0
Q ss_pred cccCCCCCCeeeccCCCeEeecC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccc---------c
Q 006349 133 AEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---------D 202 (649)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~-~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~---------~ 202 (649)
=|.. ..|.|+...+.. ... .+..++.++++++.++.+.++ .|.|.+|-|=||-=.-.. -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999875110 000 123788888898888877762 189999999999632110 0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcceEEecCC
Q 006349 203 IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (649)
Q Consensus 203 ~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~ 233 (649)
+...|.+|+..+-++|++...++.++.++-.
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1122457999999999999999999988754
No 32
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.80 E-value=0.018 Score=56.24 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-----CC---CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE-----p~---~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
-.++++.|++.++.||++|||+|-+- |.... |. ++.|.-....-|+.+|++|++.||+|++-.+. +
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--D-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--C--
Confidence 46799999999999999999999542 22221 22 22233334468999999999999999987631 1
Q ss_pred cCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHH
Q 006349 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (649)
Q Consensus 135 w~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l 214 (649)
|.|-.. .|+.. ...+-++|++.|. .+ +.++.+.=+|=|-.|.....+ ...++.+.|
T Consensus 89 ------~~~w~~--------~~~~~---~~~~~~~v~~el~--~~-yg~h~sf~GWYip~E~~~~~~----~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDW---EAERNKQVADELW--QR-YGHHPSFYGWYIPYEIDDYNW----NAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHH---HHHHHHHHHHHHH--HH-HcCCCCCceEEEecccCCccc----chHHHHHHH
Confidence 222221 22222 1112233555555 22 456778889999999875421 235566666
Q ss_pred HHHHhhcCCCcceEE
Q 006349 215 AQMAVGLNTGVPWVM 229 (649)
Q Consensus 215 ~~~~~~~g~~vP~~~ 229 (649)
.+.+++.--+.|+..
T Consensus 145 ~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 145 GKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHhCCCCCeEE
Confidence 666665544555543
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.76 E-value=0.0037 Score=70.74 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
.|+++|+.||++|+|+.|+-|.|....|. +|++|-.|....+++|+.|.++||..++-. -.=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 47999999999999999999999999997 567898999999999999999999977663 12258999976
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
. -+- .++...++..+|.+.+++.+.
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 332 456666777777777777666
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.61 E-value=0.0016 Score=73.62 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
.|+++++.||++|+|+.|+-+.|...+|. +++.|-+|....+++|+.|.++||..++-. ..=.+|.||.+
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~~ 143 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLVT 143 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 47999999999999999999999999997 556788888899999999999999987663 12258999875
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
. -+- .++...++..+|.+.+++.+.
T Consensus 144 ~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 144 EYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred hcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 3 332 345555556666666665555
No 35
>PLN02998 beta-glucosidase
Probab=96.56 E-value=0.0021 Score=73.10 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
.|+++++.||++|+|+-|+-|.|+..+|. .|.+|-+|...-+++|+.|.++||..++-.= -| -+|.||.+.
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~~ 154 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALEDE 154 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999996 6788999999999999999999998665531 24 379999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 148 -p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
-+-.=|..=..|.++++.-++++.++++
T Consensus 155 yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 155 YGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4421122223344444444444444444
No 36
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.0092 Score=66.31 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=71.4
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEceeCCCCCCC----CCceecccchhHHHHHHHHHHcCcEEEeec----Ccccc
Q 006349 66 TPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPT----QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI----GPYVC 132 (649)
Q Consensus 66 ~~~~W-----~~~l~k~Ka~G~N~V~~yv~Wn~hEp~----~G~ydf~g~~dl~~fl~~a~~~GL~vilr~----GPyi~ 132 (649)
....| ++.+..||.+|||+||.++.|..+++. |...+-+-..-|++.|+.|++.||+|++-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 899999999999999999994443554 322212222378999999999999999883 22222
Q ss_pred cccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCC
Q 006349 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (649)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~ 198 (649)
-| ..|.... . .......++...-++.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 22 1121110 0 0022233444444444444444 4568999999999863
No 37
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.025 Score=59.38 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHH---cCcEEEeecCcccccccCCCCCCeeec
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ---AGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~---~GL~vilr~GPyi~aEw~~GG~P~WL~ 145 (649)
.=+|.|+-+|+.|+|-||.- .|+..--.-|.=.=.|+.|+.+.+++|++ .||+|++.+= +-+|-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlR-vwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLR-VWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEE-EecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc
Confidence 34789999999999999984 47765444455444578899999988754 7999999861 111111
Q ss_pred c-----CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccC-CccccCCC
Q 006349 146 Y-----VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG-PVEWDIGA 205 (649)
Q Consensus 146 ~-----~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg-~~~~~~~~ 205 (649)
+ .|.--..-+-..-.+++-.|.+..+..++++ |=-+=||||.||-. .+-|..|+
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCCceeccCCC
Confidence 0 1211111122345677888999999988854 44567999999973 34333344
No 38
>PLN02814 beta-glucosidase
Probab=96.41 E-value=0.003 Score=71.98 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
..|+++++.||++|+|+-|+-|.|+..+|. +|++|-+|...-+++|+.|.++||..++-. =-|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL-----~H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL-----YHYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe-----cCCC---CCHHHHH
Confidence 348999999999999999999999999996 688999999999999999999999866553 1354 7999976
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
. -+- .++...++..+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 332 333434444444444444444
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.37 E-value=0.0032 Score=71.15 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
.++++++.||++|+|+-|+-|.|+..+|. +|.+|-.|...-+++|+.|.++||.-++-.= -| .+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHHc
Confidence 47999999999999999999999999996 5788999999999999999999998665531 23 489999865
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
-+- .++...++..+|.+.+++.+.
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 332 344444445555555544443
No 40
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.35 E-value=0.011 Score=67.00 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
.|+++++.||++|+|+-|+-+.|...+|. +|++|=+|...-+++|+.|.++||.-++-.= -| -+|.||.+.
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 125 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 125 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHHc
Confidence 47999999999999999999999999996 6788889999999999999999999776641 24 389999865
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
-+- .++...++..+|.+.+++.+.
T Consensus 126 GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 126 GDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 432 345555566666666665555
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.31 E-value=0.0041 Score=70.44 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 145 (649)
..|+++++.||++|+|+-|+-|.|+..+|. +|++|=.|...-+++|+.|.++||..++-.= -| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 348999999999999999999999999997 6678888999999999999999998665430 24 3899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 146 ~~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
+. -+- .++...++..+|.+.+++.+.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 442 233333444444444444444
No 42
>PLN02849 beta-glucosidase
Probab=96.20 E-value=0.0046 Score=70.43 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
.++++|+.||++|+|+-|+-|.|...+|. .|.+|-+|...-+++|+.|.++||.-++-.= -|+ +|.||.+.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~~ 151 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HYD---HPQYLEDD 151 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CCC---CcHHHHHh
Confidence 48999999999999999999999999996 3788989999999999999999999665531 243 89999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 148 -p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
-+-.=|..=..|.++++.-++++.++++
T Consensus 152 yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 152 YGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred cCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4321121223344444444555544444
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.20 E-value=0.0045 Score=70.06 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~--~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 145 (649)
..|+++++.||++|+|+-|+-|.|...+|. +|++|=.|...-+++|+.|.++||.-++-. =-| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL-----~H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL-----SHF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-----cCC---CCCHHHH
Confidence 348999999999999999999999999997 567888899999999999999999866553 124 3899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 146 ~~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
+. -+- .++...++..+|.+.+++.+.
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 54 442 233334444444444444444
No 44
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.056 Score=62.25 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=52.9
Q ss_pred ccEEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECc-cCCCeeEEecceecCCCccEEEEEEeec
Q 006349 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGS-LENPKLTFSKNVKLRPGVNKISLLSTSV 556 (649)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~-~~~~~~~~~~~i~Lk~G~N~L~ILven~ 556 (649)
--.+||. .+++++.. .+..|.+.+.+ .-+|||||+-+|...-. ..++.|-+|... ||.+.|.|.|.=|-.
T Consensus 556 ~P~~w~k-~f~~p~g~------~~t~Ldm~g~G-KG~vwVNG~niGRYW~~~G~Q~~yhvPr~~-Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSGS------EPTALDMNGWG-KGQVWVNGQNIGRYWPSFGPQRTYHVPRSW-LKPSGNLLVVFEEEG 626 (649)
T ss_pred CCeEEEE-EecCCCCC------CCeEEecCCCc-ceEEEECCcccccccCCCCCceEEECcHHH-hCcCCceEEEEEecc
Confidence 4679999 77776543 24678887754 46799999999965432 335778888876 899999998877776
Q ss_pred C
Q 006349 557 G 557 (649)
Q Consensus 557 G 557 (649)
|
T Consensus 627 ~ 627 (649)
T KOG0496|consen 627 G 627 (649)
T ss_pred C
Confidence 6
No 45
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.014 Score=65.12 Aligned_cols=95 Identities=17% Similarity=0.310 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc--eecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN--YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~--ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
.++++++.||+||+|+.|+-|.|+..-|..+. .|=.|....+++++.|.++||.-++-. --|+ +|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL-----~Hfd---~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL-----YHFD---LPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe-----cccC---CcHHHhh
Confidence 47899999999999999999999999997644 888899999999999999999977653 1244 7999987
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 147 ~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
. -|- .|..-.++..+|.+.++.++.
T Consensus 132 ~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 132 PYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred ccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 6 343 222333444444444444444
No 46
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=94.87 E-value=0.05 Score=56.23 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCCCccEEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCC
Q 006349 474 TADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLEN 531 (649)
Q Consensus 474 t~d~~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~ 531 (649)
.+|+.|.+||.++|.+++++. .-.+++..|++++++..|.|||||.-+=++.+.+.+
T Consensus 83 lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP 139 (297)
T KOG2024|consen 83 LRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLP 139 (297)
T ss_pred cccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecccccCccc
Confidence 478999999999999997762 234567899999999999999999988777775543
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.69 E-value=0.22 Score=46.90 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCCEEEEcee----C-----CCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 006349 72 DLIQKAKDGGLDVIQTYVF----W-----NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~yv~----W-----n~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~ 142 (649)
+.++.+|++|+|+|.++.= | ..|.+.|+- .+.-|.++++.|++.||.|+.|...- -.|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4577899999999998432 2 234444533 12356899999999999999998665 34444556799
Q ss_pred eeccCCCe-------------EeecCChhHHHHHHHHHHHHHH
Q 006349 143 WLKYVPGI-------------EFRTDNGPFKAAMHKFTEKIVS 172 (649)
Q Consensus 143 WL~~~p~~-------------~~R~~~~~y~~~~~~~~~~i~~ 172 (649)
|+..+++- ..-+.|.+|++.+.+-+++|+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILD 121 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHH
Confidence 99754331 1223456788766655555544
No 48
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=94.68 E-value=0.36 Score=54.74 Aligned_cols=149 Identities=18% Similarity=0.267 Sum_probs=99.5
Q ss_pred CcEEECCEEEEEEEEEeeC-----CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHH
Q 006349 44 KAVIINGQKRILISGSIHY-----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (649)
Q Consensus 44 ~~~~idG~p~~~~~G~~Hy-----~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~ 118 (649)
..|.|||.|.++.++.--+ -|..-+.-+-.|+-++++|+|++++ |.. |.|. =+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvYE------sd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVYE------SDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cccc------chhHHHHhhh
Confidence 5789999999999887654 2334555677899999999999998 542 4454 3599999999
Q ss_pred cCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCC
Q 006349 119 AGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (649)
Q Consensus 119 ~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~ 198 (649)
.||.|--.. =+.||-. ..|..|+..+++=++.-+.+|+ ++++||.+.=.||=-.
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccHH
Confidence 999885322 1345553 2567888888776666666655 5578998877665210
Q ss_pred --ccccCCC---C----hH----HHHHHHHHHHhhcCCCcceEEecC
Q 006349 199 --VEWDIGA---P----GK----AYAKWAAQMAVGLNTGVPWVMCKQ 232 (649)
Q Consensus 199 --~~~~~~~---~----~~----~y~~~l~~~~~~~g~~vP~~~~~~ 232 (649)
.+.-|+. . -+ -|.+-+++++....-..|.++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 0000111 1 12 355557777777778899887654
No 49
>PRK09936 hypothetical protein; Provisional
Probab=93.80 E-value=1.2 Score=47.20 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=47.4
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc-hhHHHHHHHHHHcCcEEEee
Q 006349 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~-~dl~~fl~~a~~~GL~vilr 126 (649)
.+++++.|++.++.+|+.||+|+-+ -|..- |.=||.+. -.|.+.++.|++.||.|++-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4679999999999999999999854 45443 11188775 58999999999999999875
No 50
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=93.73 E-value=0.83 Score=52.21 Aligned_cols=333 Identities=17% Similarity=0.252 Sum_probs=155.1
Q ss_pred EEEEEEEEeeC------CCCCcccHHHHHHHH---HHCCCCEEEEcee--------CCCCCCCCCcee---cccch-h--
Q 006349 52 KRILISGSIHY------PRSTPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPTQGNYY---FQDRY-D-- 108 (649)
Q Consensus 52 p~~~~~G~~Hy------~r~~~~~W~~~l~k~---Ka~G~N~V~~yv~--------Wn~hEp~~G~yd---f~g~~-d-- 108 (649)
++.=+||++=- ...+++.=++.|+.+ +-+|++.+|+.+- +.+-+ .|+.|+ |+-.+ |
T Consensus 75 ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 75 TIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp E--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHT
T ss_pred EEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchh
Confidence 33447777632 234444333333333 3489999998874 22222 233222 22211 2
Q ss_pred -HHHHHHHHHHc--CcEEEeecCcccccccCCCCCCeeeccCCCe----Eee-cCChhHHHHHHHHHHHHHHHHHhcccc
Q 006349 109 -LVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFR-TDNGPFKAAMHKFTEKIVSMMKAEKLF 180 (649)
Q Consensus 109 -l~~fl~~a~~~--GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R-~~~~~y~~~~~~~~~~i~~~i~~~~~~ 180 (649)
+..+|+.|++. +|+++.-| |. .|+|+.....+ .++ ..++.|.++...|+.+-++..++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~---- 219 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK---- 219 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH----
Confidence 34577777664 57777776 65 89999864332 233 23457888888888888887774
Q ss_pred cccCCceEEeccccccCCcc---ccCCC------ChHHHHH-HHHHHHhhcCC--CcceEEecCC--CCCC---Ccccc-
Q 006349 181 QTQGGPIILSQIENEFGPVE---WDIGA------PGKAYAK-WAAQMAVGLNT--GVPWVMCKQD--DAPD---PVINT- 242 (649)
Q Consensus 181 ~~~gGpII~~QIENEyg~~~---~~~~~------~~~~y~~-~l~~~~~~~g~--~vP~~~~~~~--~~~~---~~~~~- 242 (649)
+|=+|-++-+.||..... ..+.. ...+|++ .|.-..++.++ ++=++..+.. ..++ .++.-
T Consensus 220 --~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 220 --EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp --TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred --CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 455999999999986310 01111 1245654 36667777766 6766665421 2221 11110
Q ss_pred -----C--CCccc--c--------ccCCCCCCCCccccccccccccccCCCCCC---CChHHHHHHHHHHHHhCCceeee
Q 006349 243 -----C--NGFYC--E--------KFVPNQNYKPKMWTEAWTGWFTEFGSAVPT---RPAEDLVFSVARFIQSGGSFINY 302 (649)
Q Consensus 243 -----~--~g~~~--~--------~~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~---~~~~~~~~~~~~~l~~g~s~~n~ 302 (649)
. -+++| . ......|++.++.||-..|.. .|+..... ..++..+..+..-+..+.+ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 0 12333 1 112457999999999876531 11111111 1123344444444555543 22
Q ss_pred eee------ecCCCCCCC-CCCccccccCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcCcccCCCCccccCCCcceeEE
Q 006349 303 YMY------HGGTNFGRT-SGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHV 375 (649)
Q Consensus 303 YM~------hGGTNfG~~-~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~~~ 375 (649)
-++ .||-|++.- ..+.++..=+. +|. .++|.|+.|..+.+||+--. ..+... ........+...
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iivd~~~----~~~--~~~p~yY~~gHfSKFV~PGa-~RI~st--~~~~~~~l~~vA 445 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIVDSDT----GEF--YKQPEYYAMGHFSKFVRPGA-VRIGST--SSSSDSGLEAVA 445 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEEEGGG----TEE--EE-HHHHHHHHHHTTS-TT--EEEEEE--ESSSTTTEEEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEEEcCC----CeE--EEcHHHHHHHHHhcccCCCC-EEEEee--ccCCCCceeEEE
Confidence 222 488887532 11111111111 121 23689999998888765221 111110 000011345666
Q ss_pred eecCCCceeEEEeecCCC-ceeEEEECCc-------eeecCCceeE
Q 006349 376 FNSKSGKCAAFLANYDTT-FSAKVSFGNA-------QYDLPPWSIS 413 (649)
Q Consensus 376 y~~~~~~~~~fl~N~~~~-~~~~v~~~~~-------~~~~p~~sv~ 413 (649)
|...+++.++-+.|..+. ..++|++++. .+++|+.|+.
T Consensus 446 F~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 446 FLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 766666666666665443 3345666532 4677777664
No 51
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=93.35 E-value=0.39 Score=47.04 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=45.3
Q ss_pred CceEEEcccccEEEEEECCEEEEEEE----C-ccCCC----eeEEecceecCCCccEEEEEEeecCCccccc------cc
Q 006349 501 DPLLTIWSAGHALQVFINGQLSGTVY----G-SLENP----KLTFSKNVKLRPGVNKISLLSTSVGLPNVGT------HF 565 (649)
Q Consensus 501 ~~~L~l~~~~D~~~VfVNG~~VGt~~----~-~~~~~----~~~~~~~i~Lk~G~N~L~ILven~Gr~NyG~------~~ 565 (649)
.++|.|. ...+-.+||||+.||... . ....+ +|.+. -.|+.|.|+|.|++.+.+...... ..
T Consensus 5 ~A~l~is-a~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt--~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~ 81 (172)
T PF08531_consen 5 SARLYIS-ALGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVT--PYLRPGENVIAVWLGNGWYNGRIGFGGFPRAR 81 (172)
T ss_dssp --EEEEE-EESEEEEEETTEEEEEE--------BTTEEEEEEEE-T--TT--TTEEEEEEEEEE--S----------BTT
T ss_pred EEEEEEE-eCeeEEEEECCEEeeCCccccccccCCCceEEEEEeCh--HHhCCCCCEEEEEEeCCccccccccccccccc
Confidence 3678775 456888999999999755 1 11111 34444 348999999999998865331111 00
Q ss_pred cccccceecceEEeccCCcc--ccCCCCCceeeec
Q 006349 566 EKWNAGVLGPVTLKGLNEGT--RDISKQKWTYKIG 598 (649)
Q Consensus 566 e~~~kGI~g~V~l~g~~~g~--idLs~~~W~ykvg 598 (649)
-....++...+.+.. .+|+ +--+...|+..-+
T Consensus 82 ~~~~~~l~~~l~i~~-~DG~~~~i~TD~sW~~~~~ 115 (172)
T PF08531_consen 82 YGGRPALLAQLEITY-ADGTTEVIVTDESWKCSDG 115 (172)
T ss_dssp B----EEEEEEEE----TTEEEE-E-STTSEEE-T
T ss_pred cCCCceeEEEEEEEe-cCCCEEEeccCCCeeeecC
Confidence 012335554455533 3442 1125578999843
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.77 E-value=0.4 Score=51.49 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=71.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCC-------CCCCC-------CCceecccchhHHHHHHHHHHcCcEEEeecCccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEPT-------QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn-------~hEp~-------~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi 131 (649)
.++.-++.|++++++|||+|-.-|-+. -.+|. +|. + -|..-|..+|+.|++.||.|..++ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 566778999999999999997655432 22221 111 1 022279999999999999999776 111
Q ss_pred ccccC----CCCCCeeec-cCCCeEeec----CCh----hHHHHHHHHHHHHHHHHHhcccccccCCceEEecccc
Q 006349 132 CAEWN----YGGFPVWLK-YVPGIEFRT----DNG----PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (649)
Q Consensus 132 ~aEw~----~GG~P~WL~-~~p~~~~R~----~~~----~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIEN 194 (649)
...-. .-.-|.|+. +.++..... .+. +-..++++|+..++..|.+ .+ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 11001 112578875 445532332 111 2347788888888666652 22 466788873
No 53
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.39 E-value=0.98 Score=50.29 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=80.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEce-------------eCCCCCCCCCce-ecccchhHHHHHHHHHHcCcEEEeecCccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv-------------~Wn~hEp~~G~y-df~g~~dl~~fl~~a~~~GL~vilr~GPyi 131 (649)
.+..-.+.|.+++++|+|||-.-| +|.... ||.. -=.|..-|...|++|++.||.|+-++=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 677788999999999999997432 344433 3332 112444788889999999999999988887
Q ss_pred ccccCCCC---CCeeeccC-CCeE-eecCC-------hhHHHHHHHHHHHH-HHHHHhcccccccCCceEEeccccccC
Q 006349 132 CAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEKI-VSMMKAEKLFQTQGGPIILSQIENEFG 197 (649)
Q Consensus 132 ~aEw~~GG---~P~WL~~~-p~~~-~R~~~-------~~y~~~~~~~~~~i-~~~i~~~~~~~~~gGpII~~QIENEyg 197 (649)
.|--..-. -|.|+... |+.. .|... .++..+++.|+..+ +++++ .+ .|-++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~--~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR--NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh--CC------CCCceecceeec
Confidence 66321111 36676654 4432 33332 24567889998888 55555 33 677889876554
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.20 E-value=2 Score=50.49 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=38.7
Q ss_pred HHHHHCCCCEEEE-ceeCCCCCCCCCce----------ecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 75 QKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 75 ~k~Ka~G~N~V~~-yv~Wn~hEp~~G~y----------df~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
.-+|++|+|+|.+ +|+..-.... --| .|.+..+|.+|++.|++.||.|||..=
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 6779999999998 6764321100 012 345567999999999999999999843
No 55
>PRK14706 glycogen branching enzyme; Provisional
Probab=91.09 E-value=3.3 Score=48.86 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 74 l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.-+|++|+|+|+. +|. |.+. .|.+ .|....||.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36689999999996 231 3221 1111 23456799999999999999999884
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=90.76 E-value=0.7 Score=45.08 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCC-------CCCCce-----ecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHE-------PTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hE-------p~~G~y-----df~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
+.+.|.-+|++|+|+|.+.=++...+ -.+..| .|....+++++++.|+++||.||+..=|--++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45567779999999999843332221 111112 345668999999999999999999875544444
No 57
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=90.71 E-value=4.1 Score=42.48 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeec
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~ 145 (649)
...|++.|+.++++|++.|+.-+ +.. ...+...+++ ..++.++.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 46799999999999999999942 222 2223344554 3578899999999999975 444321 0111
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCC---ChHHHHHHHHHHHhhcC
Q 006349 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (649)
Q Consensus 146 ~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (649)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++. ......+ .-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122356666666777777777777 33 55666542 11111 0000000 01245566677777888
Q ss_pred CCc
Q 006349 223 TGV 225 (649)
Q Consensus 223 ~~v 225 (649)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 764
No 58
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.57 E-value=2.6 Score=50.53 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 74 l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
|.-+|++|+|+|.. +|+ |.+. .+.| .|.+..||.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999997 453 2111 1111 24566899999999999999999984
No 59
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.44 E-value=0.29 Score=54.61 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=110.5
Q ss_pred cEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCC-CCCC---Cceec-ccchhHHHHHHHHHHc
Q 006349 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EPTQ---GNYYF-QDRYDLVRFIKLVQQA 119 (649)
Q Consensus 45 ~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~h-Ep~~---G~ydf-~g~~dl~~fl~~a~~~ 119 (649)
.|.++++++..++..--++++..++-+++|+-++.+|++++++. .+- |+-. |.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888888877777778777777889999999999999994 344 6533 32221 2345788999999999
Q ss_pred CcEEEeecCcccccccCCCCCCe---eec-cCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 006349 120 GLYVHLRIGPYVCAEWNYGGFPV---WLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (649)
Q Consensus 120 GL~vilr~GPyi~aEw~~GG~P~---WL~-~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENE 195 (649)
+|+|+++. |.+-=.+||.=. |-- +.|+-.+ .|+.++..-++|.+.+++-. +.+..|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~y-------k~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPY-------KLDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhh-------ccChHHHHHHhcCC
Confidence 99998773 333223455321 221 1232211 35667777778888777633 45678999999999
Q ss_pred cCCccccCCCChHHHHHHHHHHHh---hcCCCcceEEec
Q 006349 196 FGPVEWDIGAPGKAYAKWAAQMAV---GLNTGVPWVMCK 231 (649)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~---~~g~~vP~~~~~ 231 (649)
--.. -...+..+++|++.|+- ..+.+ +|+...
T Consensus 148 ~lv~---~p~s~N~f~~w~~emy~yiK~ldd~-hlvsvG 182 (587)
T COG3934 148 PLVE---APISVNNFWDWSGEMYAYIKWLDDG-HLVSVG 182 (587)
T ss_pred cccc---ccCChhHHHHHHHHHHHHhhccCCC-CeeecC
Confidence 3221 12346789999999863 33433 565543
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.08 E-value=0.54 Score=51.51 Aligned_cols=73 Identities=26% Similarity=0.237 Sum_probs=50.0
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 56 ~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
+|=++++...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..+++.|+++||.|++.+.|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45567777777888999999999999999999 999998633221 23788999999999999999998855443
No 61
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.00 E-value=42 Score=37.29 Aligned_cols=249 Identities=15% Similarity=0.192 Sum_probs=127.2
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEc-------eeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEEeecCccccccc
Q 006349 64 RSTPEMWPDLIQKAKDGGLDVIQTY-------VFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEW 135 (649)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~N~V~~y-------v~Wn~hEp~~G~ydf~-g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw 135 (649)
+..++.| .+.+|++|+.-|-.- -.|.-....-..-+-. ++.-|.+|.+.|+++||++-+=-.+ -+|
T Consensus 80 ~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW 153 (384)
T smart00812 80 KFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDW 153 (384)
T ss_pred hCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHh
Confidence 3455555 457888998876531 1244332211111111 3335678899999999988764332 367
Q ss_pred CCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHH
Q 006349 136 NYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAA 215 (649)
Q Consensus 136 ~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~ 215 (649)
.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.+ + ||-|+|- +-..+. ....--.+.|.
T Consensus 154 ~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--Y-----gpd~lWf-D~~~~~------~~~~~~~~~l~ 216 (384)
T smart00812 154 FN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR--Y-----KPDLLWF-DGGWEA------PDDYWRSKEFL 216 (384)
T ss_pred CC---CccccccccccccccchhHHHHHHHHHHHHHHHHhc--C-----CCceEEE-eCCCCC------ccchhcHHHHH
Confidence 64 444321111112345678889888899998888873 2 3445552 111111 00111134455
Q ss_pred HHHhhcCCCc-ceEEecCCCCCCCccccCCCcc-c-cccCCCC-CCCCc-cccccccccccccCC-CCCCCChHHHHHHH
Q 006349 216 QMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQ-NYKPK-MWTEAWTGWFTEFGS-AVPTRPAEDLVFSV 289 (649)
Q Consensus 216 ~~~~~~g~~v-P~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~-p~~P~-~~~E~~~Gwf~~wG~-~~~~~~~~~~~~~~ 289 (649)
++++++..+. =.+.++..... .+...+++ | +...+.. ...|- .|+=.-.+|+=+-++ ....++++++...+
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~~~---~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~l 293 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWGGT---GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRDL 293 (384)
T ss_pred HHHHHhCCCCceEEEEcccccc---CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHHH
Confidence 6666554432 11233332100 00000111 1 2111111 01111 000011234433222 22367899999888
Q ss_pred HHHHHhCCceeeeeeeecCCCCCCCCCCccccccCCCCCCCCCCCCCchhHHHHHHHHHHHHhhcCcccCCCC
Q 006349 290 ARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDP 362 (649)
Q Consensus 290 ~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p 362 (649)
....++|+++ =+ .-+-+.+|.+.+..-..|++++..|+..++++-...|
T Consensus 294 ~~~Vsk~Gnl---LL---------------------NVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~ 342 (384)
T smart00812 294 VDIVSKGGNL---LL---------------------NVGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRP 342 (384)
T ss_pred hhhcCCCceE---EE---------------------ccCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCC
Confidence 8889998873 11 1234567888666678899999999988887666544
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=87.72 E-value=11 Score=45.39 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ee-------CCCCCC---CCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTY-VF-------WNGHEP---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~y-v~-------Wn~hEp---~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+.+++.|..+|++|+|+|++- |+ |.++-. ++ .-.|....+|.+|++.|+++||.|||..=+
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999973 32 333211 01 113555679999999999999999988544
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.67 E-value=10 Score=45.51 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 72 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+.|.-+|++|+|+|+. +|+ |.+. .|.+ .|....++.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467889999999996 342 4321 1111 3556689999999999999999998544
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=87.56 E-value=10 Score=47.88 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 73 LIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.|.-+|++|+|+|+. +|+ |.+. .|.+ .|....||.+|++.|++.||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 468899999999997 342 4321 1111 34566899999999999999999884
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=86.41 E-value=6.7 Score=40.85 Aligned_cols=98 Identities=10% Similarity=0.167 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHc-CcEEEeecCcccccccCCCCCCeeecc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~-GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
..|++.|+.+|++|++.|++-+........ ......++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 779999999999999999985532211111 111446899999999999 6665543 2331
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecccc
Q 006349 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (649)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIEN 194 (649)
..+...++.-++.....+++.++..+ .+ |-+.|.+...+
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 01223344444555555566666555 22 44566665543
No 66
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.33 E-value=2 Score=49.00 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=42.9
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEceeCCCC-C--------CCCC--ceecccchhHHHHHHHHHHcCcEEE
Q 006349 57 SGSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTYVFWNGH-E--------PTQG--NYYFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 57 ~G~~Hy~r~~~~~W~~~l~k~K-a~G~N~V~~yv~Wn~h-E--------p~~G--~ydf~g~~dl~~fl~~a~~~GL~vi 124 (649)
-|.-|....-++.|+..|+.++ +.||.-||. |++. . ..+| .|||+ .||.++|...++||+-+
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444555556788999999886 789999997 3322 1 1223 29999 89999999999999988
Q ss_pred eecC
Q 006349 125 LRIG 128 (649)
Q Consensus 125 lr~G 128 (649)
+..|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7765
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.04 E-value=1.1 Score=46.37 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCC----CCCCce-e----cccchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHE----PTQGNY-Y----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hE----p~~G~y-d----f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.|.-+|++|+|+|.+-=++.... -.+-.| + |....+|.++++.|++.||+|||..
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4568899999999999853333221 111111 1 3356799999999999999999884
No 68
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.85 E-value=5.3 Score=42.10 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=64.8
Q ss_pred cccccceeEEEecCcEEECCEEEEEEEEE--eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc--cc
Q 006349 31 EISFVKASVSYDHKAVIINGQKRILISGS--IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DR 106 (649)
Q Consensus 31 ~~~~~~~~v~~d~~~~~idG~p~~~~~G~--~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~--g~ 106 (649)
+.......|.+. ++.+.|.+++++.|= +| .++.-.+..+++|++|+..++.|.+=+... -+.|. |.
T Consensus 8 ~~~~~~~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~ 77 (266)
T PRK13398 8 KKNGEKTIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGE 77 (266)
T ss_pred ccCCCCcEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHH
Confidence 334445556553 477777788888883 33 466778889999999999999998874433 23566 57
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 006349 107 YDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 107 ~dl~~fl~~a~~~GL~vilr~ 127 (649)
..+..+-+.|++.||.++-.|
T Consensus 78 ~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 78 EGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEee
Confidence 889999999999999988775
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.42 E-value=11 Score=39.21 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~~ 146 (649)
..|++.++.++++|++.|+..+. ..|+ .....+|+ ..++.++.++++++||.|. +.++.+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------ 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------ 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc------
Confidence 46999999999999999999532 1121 01122333 3478999999999999875 333210 0 00
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccc-cCCCChHHHHHHHHHHHhhcCCCc
Q 006349 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 225 (649)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 225 (649)
.+.+.|+..++...+.++++++..+ .+ |.++|-+.--..+..... ..-..-.+.++.+.+++.+.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1234566666666667777776666 22 445554421000000000 000011246677778888888764
No 70
>PRK12313 glycogen branching enzyme; Provisional
Probab=82.78 E-value=2.5 Score=49.87 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=38.0
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 74 l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
|.-+|++|+|+|.. +|+ |.+. .+.| .|.+..||.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999996 443 2211 1111 35567899999999999999999984
No 71
>PLN03059 beta-galactosidase; Provisional
Probab=82.25 E-value=1.9 Score=51.89 Aligned_cols=69 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred EEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEEC---------------------------ccCCC
Q 006349 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYG---------------------------SLENP 532 (649)
Q Consensus 480 yvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~---------------------------~~~~~ 532 (649)
..||+++|++++.. .+..|.+.+.. --+|||||+-+|.-.- .-..+
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmG-KG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~ 692 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMG-KGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQR 692 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCC-CeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeE
Confidence 78999999986443 23678887654 4569999999996551 11123
Q ss_pred eeEEecceecCCCccEEEEEEeecC
Q 006349 533 KLTFSKNVKLRPGVNKISLLSTSVG 557 (649)
Q Consensus 533 ~~~~~~~i~Lk~G~N~L~ILven~G 557 (649)
-|-+|.+. |++|+|+|.|+=+ .|
T Consensus 693 lYHVPr~~-Lk~g~N~lViFEe-~g 715 (840)
T PLN03059 693 WYHVPRSW-LKPSGNLLIVFEE-WG 715 (840)
T ss_pred EEeCcHHH-hccCCceEEEEEe-cC
Confidence 36688876 8999999977655 44
No 72
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.52 E-value=2.3 Score=41.39 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=71.7
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEee
Q 006349 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (649)
Q Consensus 74 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R 153 (649)
|+.++++|+..|+...........+ ...++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 6789999999999954432222111 34789999999999999653211110 100 101123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccc--cccCCcccc-CCCChHHHHHHHHHHHhhcCCCc
Q 006349 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTGV 225 (649)
Q Consensus 154 ~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 225 (649)
+.+++ ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-+.-.+.++.|.+.+.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888877 33 5667777654 222111000 00012346677777788888654
No 73
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=80.76 E-value=3 Score=48.26 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.|.-+|++|+|+|.+ +|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34688999999999997 342 3221 1111 34566799999999999999999884
No 74
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.74 E-value=5.2 Score=43.16 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=71.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-------ceeCCCCCCCCCceecc-c-chhHHHHHHHHHHcCcEEEeecCcccccccC
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-D-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~-------yv~Wn~hEp~~G~ydf~-g-~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~ 136 (649)
.++.-++.|+.+|+.|+|+|-+ .|.+....|..-+..-. . ..|+.++++.++++|||+|.|+=-+-- ..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD-~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKD-PVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecC-hHH
Confidence 4466788999999999999874 24454444433222211 1 369999999999999999999633221 111
Q ss_pred CCCCCeeeccCC-CeEeecCC-----hhHHHHHHHHHHHHHHHHHhccc
Q 006349 137 YGGFPVWLKYVP-GIEFRTDN-----GPFKAAMHKFTEKIVSMMKAEKL 179 (649)
Q Consensus 137 ~GG~P~WL~~~p-~~~~R~~~-----~~y~~~~~~~~~~i~~~i~~~~~ 179 (649)
..--|.|-.+.. +-..|..+ .+|.+++.+|.-.|+..+++.++
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GF 138 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGF 138 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 111466654321 21122221 36889999999999999985543
No 75
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=80.42 E-value=5.9 Score=47.97 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred cccCchhhhhc-CCCCCccEEEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecce
Q 006349 462 FTKDGLWEQVY-LTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNV 540 (649)
Q Consensus 462 ~~~~~~~Eqlg-~t~d~~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i 540 (649)
...|.+|+..+ .-+..+.=++|.+++.++... .+.+..|.+....-.+.||+||+.+++..+.. +.|.+..+.
T Consensus 45 i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~--~~fev~vng 118 (808)
T COG3250 45 IAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVP----AGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVY--TPFEVDVTG 118 (808)
T ss_pred ccCCccHhhcCccCcceecceeeeecccCCccc----cCCceEEEEeccccceeEEeCCeEEEEecCce--eEEEEeecc
Confidence 34455566666 334455668999998776553 56678899999999999999999999988765 446666554
Q ss_pred ecCCCccEEEEEEee
Q 006349 541 KLRPGVNKISLLSTS 555 (649)
Q Consensus 541 ~Lk~G~N~L~ILven 555 (649)
.+..+.|.+.|-++.
T Consensus 119 ~~v~~~~~~~~~~~~ 133 (808)
T COG3250 119 PYVGGGKDSRITVEF 133 (808)
T ss_pred ceecCCcceEEEEee
Confidence 555666666666655
No 76
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=80.21 E-value=27 Score=38.74 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=54.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc---chhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCC
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFP 141 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g---~~dl~~fl~~a~~~GL~vi-lr~GPyi~aEw~~GG~P 141 (649)
++....+++++++++|+..|+.. ..+ .-| |+.+- ..++.++-++++++||.|. +-++-+.+..+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P--~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~-- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIP--FGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG-- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCC--CCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC--
Confidence 34467899999999999999963 110 011 11110 2357899999999999975 343211111222222
Q ss_pred eeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 142 VWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 142 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
+-+.|+..+++.-+++++.++.-+
T Consensus 102 ----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567666665555566666655
No 77
>PRK01060 endonuclease IV; Provisional
Probab=79.99 E-value=37 Score=35.20 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCeeeccC
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~v--ilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
+++.|+.++++|++.|+..+. +-+.-.++.++ ..++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 889999999999999999542 11111122222 226888999999999973 11123332
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 006349 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (649)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~Q 191 (649)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334567777777777777777766 33 44555554
No 78
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=79.38 E-value=20 Score=39.07 Aligned_cols=139 Identities=14% Similarity=0.221 Sum_probs=86.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHH---HcCcEEEeecCcccccccCCCCCC
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFP 141 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~---~~GL~vilr~GPyi~aEw~~GG~P 141 (649)
..|+..+..++.+|+.|++.--.|-.|. .|++-|++-++..- +.+|...|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 3677889999999999999999988774 44556666665443 445555454 22222310
Q ss_pred eeeccCCCeEeecCChhHH--HHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHh
Q 006349 142 VWLKYVPGIEFRTDNGPFK--AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 219 (649)
Q Consensus 142 ~WL~~~p~~~~R~~~~~y~--~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 219 (649)
.|-.....+.+- ..|. +..++.++.|.+.+++..+.--+|-||+++==-.++ .+-+++++.+++.|+
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 121111222111 1121 234677788888998866665688899987422222 235789999999999
Q ss_pred hcCCCcceEEecC
Q 006349 220 GLNTGVPWVMCKQ 232 (649)
Q Consensus 220 ~~g~~vP~~~~~~ 232 (649)
+.|+.-+.+....
T Consensus 186 ~~G~~giyii~~~ 198 (345)
T PF14307_consen 186 EAGLPGIYIIAVQ 198 (345)
T ss_pred HcCCCceEEEEEe
Confidence 9999876655443
No 79
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=79.13 E-value=3.8 Score=46.56 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=42.1
Q ss_pred ccHH---HHHHHHHHCCCCEEEE-ceeCCC-----CCCCC-Cce-------------ecccchhHHHHHHHHHHcCcEEE
Q 006349 68 EMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPTQ-GNY-------------YFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 68 ~~W~---~~l~k~Ka~G~N~V~~-yv~Wn~-----hEp~~-G~y-------------df~g~~dl~~fl~~a~~~GL~vi 124 (649)
+.|. +.|.-+|++|+++|-+ +++-+. |--.+ .-| .|....||.++++.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4564 5677889999999987 455432 21111 112 23356799999999999999999
Q ss_pred eec
Q 006349 125 LRI 127 (649)
Q Consensus 125 lr~ 127 (649)
+..
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 985
No 80
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=79.06 E-value=3.8 Score=48.01 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cee-------CCCCCCCCCce------ecccchhHHHHHHHHHHcCcEEEee
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY------YFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~-yv~-------Wn~hEp~~G~y------df~g~~dl~~fl~~a~~~GL~vilr 126 (649)
..+.=.+.|.-+|+||+++|+. +|. |.+- |.. .|....||.+||+.|+++||-|||.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3444577899999999999997 221 4332 111 2334579999999999999999998
No 81
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=78.38 E-value=6.2 Score=50.00 Aligned_cols=112 Identities=15% Similarity=0.250 Sum_probs=67.2
Q ss_pred cEEECCEEEEEEEE-E--eeCCCC--CcccHHHHHHHHHHCCCCEEEE-cee-CC---CCCCCCCcee----c----ccc
Q 006349 45 AVIINGQKRILISG-S--IHYPRS--TPEMWPDLIQKAKDGGLDVIQT-YVF-WN---GHEPTQGNYY----F----QDR 106 (649)
Q Consensus 45 ~~~idG~p~~~~~G-~--~Hy~r~--~~~~W~~~l~k~Ka~G~N~V~~-yv~-Wn---~hEp~~G~yd----f----~g~ 106 (649)
.+.|||++.+.+.+ + -..+++ +-+.|++.|..+|++|.|+|.. +++ =. ..=...+.+. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 46666633333332 2 234554 4477999999999999999986 343 11 0001112221 3 356
Q ss_pred hhHHHHHHHHHHc-CcEEEeecCcccccccCCCCC-CeeeccCCCeEeecCChhHHHH
Q 006349 107 YDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKAA 162 (649)
Q Consensus 107 ~dl~~fl~~a~~~-GL~vilr~GPyi~aEw~~GG~-P~WL~~~p~~~~R~~~~~y~~~ 162 (649)
.|+.++++.|++. ||++|+.. + |+.=+. =.||.++|+.-.-..+.++++.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 7899999999996 99999874 1 222221 2578777765445555566554
No 82
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=77.72 E-value=9.2 Score=41.68 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=69.3
Q ss_pred HhhcccccccceeEEEecCcEEECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc
Q 006349 26 SFCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ 104 (649)
Q Consensus 26 ~~~~~~~~~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~ 104 (649)
-+.|-++.+....|.+. .+.+.|.++.++.| +--+ +++.-.+.-+.+|++|.++++.|+|= |+---|.|.
T Consensus 69 k~~sr~~~~~~t~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~ 139 (335)
T PRK08673 69 KLASREFKPEPTVVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQ 139 (335)
T ss_pred hhhhcccCCCCCEEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccc
Confidence 36677777777777774 47777888888888 2222 46667778888999999999999995 433336777
Q ss_pred c--chhHHHHHHHHHHcCcEEEeec
Q 006349 105 D--RYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 105 g--~~dl~~fl~~a~~~GL~vilr~ 127 (649)
| ..-|.-+.+.|++.||.++-.+
T Consensus 140 G~g~~gL~~L~~~~~~~Gl~v~tev 164 (335)
T PRK08673 140 GLGEEGLKLLAEAREETGLPIVTEV 164 (335)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEee
Confidence 5 5677778888999999988775
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=77.40 E-value=5.6 Score=43.01 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=59.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc-eecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 56 ~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~-ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
+|=++.+.|.+.+.=...|++|...|+..|=| ++|.|.+.. --|. -+.++++.|.++||+||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55677778888888889999999999999988 899998742 1122 577999999999999999998877655
No 84
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.51 E-value=4 Score=47.21 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCcee----------cccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 69 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~yd----------f~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
-+.+.|.-+|++|+|+|-+ +++=+-.. ...|+ |....+|.+|++.|+++||+|||..=|
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 4677889999999999987 34432110 01232 445679999999999999999988533
No 85
>PLN02960 alpha-amylase
Probab=76.37 E-value=5.2 Score=48.54 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEE-cee-------CCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~-yv~-------Wn~hEp~~--G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
++.|.-+|++|+|+|+. .|+ |.+.-... =.-.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999997 343 33211000 00024456799999999999999999984
No 86
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=76.23 E-value=14 Score=38.31 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=39.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
..+++|++|++.|-+ +|-|.+ --|. +.+.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR-~~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII----GHSERR-QYFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe----Cccccc-CcCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 456899999999999 555544 3333 2356888999999999999999986
No 87
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=76.02 E-value=4.3 Score=33.36 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=29.4
Q ss_pred eEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeecC
Q 006349 503 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (649)
Q Consensus 503 ~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~G 557 (649)
.|.|.+.-..+.|||||+++|... ..+. .|+.|.++|. ++.-|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~--v~~~G 45 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVT--VEKPG 45 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEE--EEECC
Confidence 678888888899999999999322 2222 2677876655 44455
No 88
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.45 E-value=42 Score=34.83 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~~ 146 (649)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +..+... .++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------ccC-----
Confidence 36999999999999999999432 1111 01122333 2468899999999999875 3332110 010
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCC-------hHHHHHHHHHHHh
Q 006349 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAP-------GKAYAKWAAQMAV 219 (649)
Q Consensus 147 ~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~-------~~~y~~~l~~~~~ 219 (649)
+-+.++.-++...+.+++.++..+ .+ |.++|-+. |... .++.. -.+.++.|.++++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~~-~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYDV-YYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cccc-cccccHHHHHHHHHHHHHHHHHHHH
Confidence 112455556666677777777776 32 55666542 1100 01111 1345667777787
Q ss_pred hcCCCc
Q 006349 220 GLNTGV 225 (649)
Q Consensus 220 ~~g~~v 225 (649)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 887654
No 89
>PRK10785 maltodextrin glucosidase; Provisional
Probab=74.66 E-value=6.1 Score=46.31 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEE-ceeCCCCCCCCCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~yd----------f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.|.-+|++|+|+|-+ +||=+ |.--.|| |.+..||.+|++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s---~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTA---PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccC---CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55788899999999997 56532 1111232 4466899999999999999999874
No 90
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=73.93 E-value=5.1 Score=41.66 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
+...++.|+.+|++||++|++ ..|..+.+ ..+..++|+.|++.|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667799999999999999998 34555544 34677999999999999999987
No 91
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=73.70 E-value=6.1 Score=46.37 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCEEEE-cee---------------CCCCC-----CCCCcee----cc--cchhHHHHHHHHHHcCcEEE
Q 006349 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~yd----f~--g~~dl~~fl~~a~~~GL~vi 124 (649)
+.|.-+|++|+|+|.+ +|+ |.+.- |. +.|- +. ...+|.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 343 32221 11 0111 10 12689999999999999999
Q ss_pred eec
Q 006349 125 LRI 127 (649)
Q Consensus 125 lr~ 127 (649)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 884
No 92
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=73.57 E-value=6.4 Score=45.71 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=47.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCce--------ecccc----hhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~y-v~Wn~hEp~~G~y--------df~g~----~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
+.=++.|..|+...||.|+.| ..|.||.|-|+.= |+.++ .-+...|+.|++.||.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 356789999999999999999 8899999987543 23343 4688999999999999885432222222
Q ss_pred c--CCCCCCeeec
Q 006349 135 W--NYGGFPVWLK 145 (649)
Q Consensus 135 w--~~GG~P~WL~ 145 (649)
. ..|=.|.|-.
T Consensus 198 ~~~~~gv~~eW~l 210 (559)
T PF13199_consen 198 NYEEDGVSPEWGL 210 (559)
T ss_dssp T--S--SS-GGBE
T ss_pred CcccccCCchhhh
Confidence 2 3556788865
No 93
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.53 E-value=47 Score=34.16 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
+++.|++++++|++.|+.. . |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999982 1 11 13689999999999999854
No 94
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=72.74 E-value=35 Score=34.89 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
.+++.+++++++|++.|+...++ ..++.++.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 12578899999999999863
No 95
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.80 E-value=56 Score=33.71 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
..+++.|+.++++|++.|++..-.. |+-.+ +++ ..++.++-++++++||.|.. .+|. | +++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~-~-----~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE-T-----NGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc-c-----cCcCcccc--
Confidence 3589999999999999999832100 11011 121 24688999999999999753 2221 1 13332221
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCC---CChHHHHHHHHHHHhhcCCC
Q 006349 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG---APGKAYAKWAAQMAVGLNTG 224 (649)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~~ 224 (649)
..++.-+++..+.+++.++.-+ . =|.+.|.+-.-.. +... ... ..-.+.++.|.+.+.+.|+.
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHA-GYLT-PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1234444555555555555555 2 2445554432111 1000 000 01124677778888888765
Q ss_pred c
Q 006349 225 V 225 (649)
Q Consensus 225 v 225 (649)
+
T Consensus 145 l 145 (275)
T PRK09856 145 L 145 (275)
T ss_pred E
Confidence 4
No 96
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=70.60 E-value=9.2 Score=44.42 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCC-CCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 006349 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~-~G~yd----------f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.+.|.-+|++|+++|-+ +++-+ |. ..-|| |....||.++++.|+++||+|||..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567889999999999987 45422 11 11232 4456799999999999999999874
No 97
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=70.59 E-value=1.9 Score=44.12 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
....+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+. +|..++
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~~~ 137 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLRGE 137 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECECHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecCch
Confidence 5678899999999999999997765544333344 8999999999999999999 454443
No 98
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.18 E-value=6.6 Score=45.38 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ceeCCCCCCC-CCcee----------cccchhHHHHHHHHHHcCcEEEeec
Q 006349 68 EMWPDLIQKAKDGGLDVIQT-YVFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~-~G~yd----------f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.-+.+.|.-+|++|+|+|-+ +|+=+ +. ...|| |....|+.++++.|++.||+|||..
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34677899999999999987 34311 11 12222 4456799999999999999999863
No 99
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=70.11 E-value=37 Score=35.06 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCce-ecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCC
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~y-df~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p 148 (649)
-++.|+.+.+.|++.|+. ...+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 457899999999999999 4455533110 122 236889999999999986542 3432
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 006349 149 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (649)
Q Consensus 149 ~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~Q 191 (649)
+.+.+.++..+++..+++++.++..+ .+ |.++|-+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777777777666 32 45555554
No 100
>PRK09505 malS alpha-amylase; Reviewed
Probab=69.81 E-value=9.6 Score=45.41 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCC----CC--------c----------eecccchhHHHHHHHHHHcCcEEEee
Q 006349 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG--------N----------YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~----~G--------~----------ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
+.+.|.-+|++|+|+|-+ .++=+.|... .| . -.|....+|+++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999985 4554433211 11 1 12445679999999999999999998
Q ss_pred cC
Q 006349 127 IG 128 (649)
Q Consensus 127 ~G 128 (649)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 101
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.38 E-value=37 Score=36.20 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=52.2
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 63 PRSTPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N--~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
...+.+.-.+.++++++.|+. +|-+=..|. ..-|.|.|.-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 445777889999999999964 555434452 34566666432 3899999999999999999999999853
No 102
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=68.34 E-value=17 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5567889999999999999999732 333 58777765 5778999999999988754
No 103
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=67.95 E-value=9.8 Score=43.54 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCC---CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~---G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 145 (649)
.++++++.||++|++.-|.-|.|+..=|.- +.-+-.|..-...+|+..-++||..++-. | -| .+|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 478999999999999999999999988753 45788888888899999999999966543 1 24 3787776
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 006349 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (649)
Q Consensus 146 ~~-p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~Q 191 (649)
+. .+-.-+..=..|+++.+--+++..+++| ....-|.+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 52 2321122224577777778888888888 55444666666655
No 104
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.70 E-value=11 Score=40.19 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCceecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~-~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~a 133 (649)
..+..++.++++|+.||.+=...+=..++... -+.|.|.-. -|..++++..+++|+++++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 66678999999999996664444433333221 134555422 389999999999999999998888753
No 105
>PRK09989 hypothetical protein; Provisional
Probab=66.60 E-value=47 Score=34.15 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
-.+++|++++++|++.|++..+|. .+..++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999843221 2366888889999999874
No 106
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=65.94 E-value=27 Score=41.59 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=74.2
Q ss_pred EEEEEEEEeeCCC-CC----cccHHHHHHHHHHCCCCEEE---------------EceeCCCCCCCCCceecccchhHHH
Q 006349 52 KRILISGSIHYPR-ST----PEMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLVR 111 (649)
Q Consensus 52 p~~~~~G~~Hy~r-~~----~~~W~~~l~k~Ka~G~N~V~---------------~yv~Wn~hEp~~G~ydf~g~~dl~~ 111 (649)
+..++...+-|-- .. .+.-...|+.+|++|+|||- .|++|. |= ||+-|. +++
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~-~l--p~r~d~-----f~~ 384 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNR-LL--PMRADL-----FNR 384 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcc-cc--ccccCC-----cCH
Confidence 4445555444433 22 24467789999999999996 456673 32 233331 112
Q ss_pred -HHHHHHHcCcEEEeecCccccc---------ccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccc
Q 006349 112 -FIKLVQQAGLYVHLRIGPYVCA---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQ 181 (649)
Q Consensus 112 -fl~~a~~~GL~vilr~GPyi~a---------Ew~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~ 181 (649)
...++.+.|+.|..+..||-.. +++..+-|.-.+ |+-..| =.+|..++++|++.|..-|+++
T Consensus 385 ~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~---- 456 (671)
T PRK14582 385 VAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH---- 456 (671)
T ss_pred HHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh----
Confidence 3455899999999999998532 121111121111 100112 2467789999999998888842
Q ss_pred ccCCceEEecccccc
Q 006349 182 TQGGPIILSQIENEF 196 (649)
Q Consensus 182 ~~gGpII~~QIENEy 196 (649)
.+|=++|...+-
T Consensus 457 ---~~~dGilf~Dd~ 468 (671)
T PRK14582 457 ---AAFDGILFHDDA 468 (671)
T ss_pred ---CCCceEEecccc
Confidence 356667766553
No 107
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=65.86 E-value=24 Score=39.20 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
...+.|+++|+.+|++||+...+ |..- ...+.- .-|...++.|++.|+++++-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999999999998 5552 222332 368899999999999999886
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=65.00 E-value=14 Score=38.34 Aligned_cols=52 Identities=12% Similarity=0.332 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
...++.++.+|+.||++|++ ..|..+++ ..+..++|+.+++.||.|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56788889999999999998 35666655 347889999999999999988875
No 109
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=64.29 E-value=14 Score=36.20 Aligned_cols=54 Identities=33% Similarity=0.369 Sum_probs=29.4
Q ss_pred CCceEEEcc----cccEEEEEECCEEEEEEE-----------------CccCCCeeEEecceecCCCccEEEEEEee
Q 006349 500 QDPLLTIWS----AGHALQVFINGQLSGTVY-----------------GSLENPKLTFSKNVKLRPGVNKISLLSTS 555 (649)
Q Consensus 500 ~~~~L~l~~----~~D~~~VfVNG~~VGt~~-----------------~~~~~~~~~~~~~i~Lk~G~N~L~ILven 555 (649)
+..+|+|.- ..-+.+|.||| .++... +......|+||.. .|++|.|+|+|-+..
T Consensus 78 ~~~tL~i~la~a~~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~-~L~~G~Nti~lt~~~ 152 (167)
T PF14683_consen 78 GTYTLRIALAGASAGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPAS-LLKAGENTITLTVPS 152 (167)
T ss_dssp --EEEEEEEEEEETT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TT-SS-SEEEEEEEEEE-
T ss_pred CcEEEEEEeccccCCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHH-HEEeccEEEEEEEcc
Confidence 346777763 45688999999 444311 1111124677765 499999999887754
No 110
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.87 E-value=16 Score=31.53 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=33.2
Q ss_pred CceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeecC
Q 006349 501 DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (649)
Q Consensus 501 ~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~G 557 (649)
...|++..-....+-||||+++|+.... ..+.++. ...|+++|++ +-..|
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~~~---~~~G~h~l~v-vD~~G 82 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFWQP---DRPGEHTLTV-VDAQG 82 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEcccCCCC---CeEEeCC---CCCeeEEEEE-EcCCC
Confidence 3456665556699999999999876643 3343331 2779988887 44444
No 111
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=63.74 E-value=16 Score=44.25 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=45.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCce----------ecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~~G~y----------df~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+-+.+.+.|.-++++|+++|-+ +++ .......--| .|.+..++.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~-~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPIL-TAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCc-cCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4455889999999999999976 343 1110000111 2557889999999999999999998654
No 112
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=62.81 E-value=12 Score=47.64 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCEEEE-ceeCCCCCCC---CCc-----ee----------cc--cchhHHHHHHHHHHcCcEEEeec
Q 006349 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QGN-----YY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~-yv~Wn~hEp~---~G~-----yd----------f~--g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.|.-+|++|+|+|.. +|+=...|.. .|. || |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577999999999997 4652222211 110 22 23 56799999999999999999984
No 113
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=62.39 E-value=15 Score=42.35 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=41.1
Q ss_pred CCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeec
Q 006349 500 QDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (649)
Q Consensus 500 ~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~ 556 (649)
..+.|.|.+++-.+.|||||+.|+....+...-.|.+.- ...|.|.|.|.-.+.
T Consensus 93 ~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt~---ii~~~n~i~~~f~ss 146 (867)
T KOG2230|consen 93 VGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVTD---IIAGENDITIKFKSS 146 (867)
T ss_pred ccceEEEeecceeEEEEEccEEEeeccccceeEEEeEEE---EecCCcceEEEeehh
Confidence 347899999999999999999999988766544454442 233888898876654
No 114
>PRK14565 triosephosphate isomerase; Provisional
Probab=61.85 E-value=27 Score=36.23 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
+-..+++|++|++.+-+ +|-|.+. .|+=+ +..+.+=++.|.++||.+|++.|
T Consensus 75 evS~~mLkd~G~~~vii----GHSERR~-~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 75 EISAKMLKECGCSYVIL----GHSERRS-TFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred ccCHHHHHHcCCCEEEE----CcccccC-cCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 33566899999999999 5555443 33322 22333444999999999999987
No 115
>PLN02361 alpha-amylase
Probab=61.85 E-value=19 Score=40.29 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCC---CCCc-ee----cccchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEP---TQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp---~~G~-yd----f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.|.-+|++|+++|-+.=+.....+ .+.. |+ |....+|.++++.|++.||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 55677889999999987533221111 1211 22 4456799999999999999999875
No 116
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=61.46 E-value=12 Score=32.36 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=26.5
Q ss_pred ccCCceEEeccccc-cCCccccC----CC-ChHHHHHHHHHH---HhhcCCCcceEE
Q 006349 182 TQGGPIILSQIENE-FGPVEWDI----GA-PGKAYAKWAAQM---AVGLNTGVPWVM 229 (649)
Q Consensus 182 ~~gGpII~~QIENE-yg~~~~~~----~~-~~~~y~~~l~~~---~~~~g~~vP~~~ 229 (649)
++.+.|.+|+|-|| .++....+ +. ....+.+||+++ +|+.+.+.|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45578999999999 55322111 11 234566666664 567888998764
No 117
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=60.60 E-value=20 Score=43.75 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCC---ce---e-------cccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQG---NY---Y-------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~y-v~Wn~hEp~~G---~y---d-------f~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+-+.+.+.|.-++++|+|+|-.- ++ +..+| -| | |.+..++.+|++.|+++||.|||.+=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568999999999999999873 32 11122 12 2 446789999999999999999998655
No 118
>PRK12677 xylose isomerase; Provisional
Probab=60.45 E-value=83 Score=34.94 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=56.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc---cchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCe
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPV 142 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~---g~~dl~~fl~~a~~~GL~vi-lr~GPyi~aEw~~GG~P~ 142 (649)
+-.+++.++++++.|+..|+. |.+..--|+.+ -...+.++.+++++.||.|. +-+.-+.+..+..|+
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVEl------h~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~--- 100 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTF------HDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA--- 100 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEe------cccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc---
Confidence 335799999999999999988 22111112221 12358899999999999976 544322111222222
Q ss_pred eeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 143 WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 ---------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 ---------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445567777766666666666655
No 119
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=59.99 E-value=35 Score=36.92 Aligned_cols=160 Identities=19% Similarity=0.340 Sum_probs=91.1
Q ss_pred HHHHHhhcccccccceeEEEec-CcE---EECCEEEEEEEEEee---CCC----CCcccHHHHHHHHHHCCCCEEEEcee
Q 006349 22 LVLLSFCSWEISFVKASVSYDH-KAV---IINGQKRILISGSIH---YPR----STPEMWPDLIQKAKDGGLDVIQTYVF 90 (649)
Q Consensus 22 ~~~~~~~~~~~~~~~~~v~~d~-~~~---~idG~p~~~~~G~~H---y~r----~~~~~W~~~l~k~Ka~G~N~V~~yv~ 90 (649)
+--|+-|+.|+.-++.+..+.+ +.| .+.|.--+-+++++- |.+ +..-.|+..-.-.+.+||-+|.+|-+
T Consensus 76 l~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~y 155 (410)
T KOG1412|consen 76 LPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPY 155 (410)
T ss_pred chhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeee
Confidence 3345555777777666655544 222 222322222222221 222 34557999999999999999999999
Q ss_pred CCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHH
Q 006349 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEK 169 (649)
Q Consensus 91 Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~ 169 (649)
|+..+-.= |++.||.-.+..--+.| +.. .||-=..|= || .++=+.+
T Consensus 156 Wd~~~k~~---------d~e~~Lsdl~~APe~si~iLh---aCAhNPTGm----------------DP-----T~EQW~q 202 (410)
T KOG1412|consen 156 WDAENKCV---------DLEGFLSDLESAPEGSIIILH---ACAHNPTGM----------------DP-----TREQWKQ 202 (410)
T ss_pred ecCCCcee---------cHHHHHHHHhhCCCCcEEeee---ccccCCCCC----------------CC-----CHHHHHH
Confidence 99865432 67789888888665532 332 266533321 22 1223456
Q ss_pred HHHHHHhcccccccCCce--EEeccccccCCccccCCCChHHHHHHHHHHHhhcCCCcceEEec
Q 006349 170 IVSMMKAEKLFQTQGGPI--ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (649)
Q Consensus 170 i~~~i~~~~~~~~~gGpI--I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (649)
|++.|++..++ |. |+.| |. ..|..++ =.|......+.| .+++.|+
T Consensus 203 ia~vik~k~lf-----~fFDiAYQ-----Gf---ASGD~~~--DawAiR~fV~~g--~e~fv~Q 249 (410)
T KOG1412|consen 203 IADVIKSKNLF-----PFFDIAYQ-----GF---ASGDLDA--DAWAIRYFVEQG--FELFVCQ 249 (410)
T ss_pred HHHHHHhcCce-----eeeehhhc-----cc---ccCCccc--cHHHHHHHHhcC--CeEEEEh
Confidence 77777765543 32 3444 32 1233222 356677777777 4667776
No 120
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=59.79 E-value=15 Score=43.91 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCC---CCCC-----cee----------c---ccchhHHHHHHHHHHcCcEEEeec
Q 006349 73 LIQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NYY----------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~-yv~Wn~hE---p~~G-----~yd----------f---~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.|.-+|++|+|+|.. +|+=...+ ...| -|| | ....+|.+|++.|++.||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999997 45411111 1111 121 1 124689999999999999999984
No 121
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=59.63 E-value=6.2 Score=41.05 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
+-...++|++|++.|-+ +|-|.+ -.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 74 evS~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 74 EVSAEMLKDLGCKYVII----GHSERR-QYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHBHHHHHHTTESEEEE----SCHHHH-HHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HhHHHHHHHhhCCEEEe----cccccc-Cccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 44567899999999999 555533 2222 4456889999999999999999986
No 122
>PTZ00333 triosephosphate isomerase; Provisional
Probab=59.24 E-value=15 Score=38.53 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
...++|++|++.|-+ +|-| ++..|. +.+..+.+=++.|.++||.+|++.|
T Consensus 81 S~~mL~d~G~~~vii----GHSE-RR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 81 SAEMLKDLGINWTIL----GHSE-RRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred CHHHHHHcCCCEEEE----Cccc-ccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999999 5444 444442 3356888889999999999999987
No 123
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=58.21 E-value=21 Score=46.53 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc---e----------ecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN---Y----------YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~---y----------df~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+-+.|.+.|.-+|++|+|+|-+-=++ +..+|. | .|.+..++.+|++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55669999999999999999873222 222221 2 2457789999999999999999988544
No 124
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=57.68 E-value=20 Score=29.62 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=25.0
Q ss_pred ccccEEEEEECCEEEEEEECccC--CCeeEEecc
Q 006349 508 SAGHALQVFINGQLSGTVYGSLE--NPKLTFSKN 539 (649)
Q Consensus 508 ~~~D~~~VfVNG~~VGt~~~~~~--~~~~~~~~~ 539 (649)
...|.+.||++++++|+.++... ..+|.|...
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 35899999999999999997633 466777643
No 125
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=57.17 E-value=58 Score=35.30 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCCcee--------cccchhHHHHHHHHHHcCcEEEeec
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYY--------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp------~~G~yd--------f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.+...+.|..|...++|+...++- |.+.-+ ..|.+. |=-..|+.++++.|++.|+.||-.+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7888999999999999999999874 644322 123221 1113599999999999999999664
No 126
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=56.02 E-value=56 Score=36.48 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=56.9
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCC----Cceecccc---hhHHHHHHHHHHcCcEEEeecCccccc
Q 006349 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (649)
Q Consensus 61 Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~----G~ydf~g~---~dl~~fl~~a~~~GL~vilr~GPyi~a 133 (649)
+|+.++.+.-.+.+++++++|++.+.+==-|....... |.+--+-. .-|..+++.+++.||+.=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 45667778888899999999998766644576542111 32221100 248999999999999999998887654
Q ss_pred c--cCCCCCCeeeccCCC
Q 006349 134 E--WNYGGFPVWLKYVPG 149 (649)
Q Consensus 134 E--w~~GG~P~WL~~~p~ 149 (649)
. --+-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 2 113347999987654
No 127
>PRK03705 glycogen debranching enzyme; Provisional
Probab=55.15 E-value=21 Score=42.50 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCCC---C-----cee----------ccc-----chhHHHHHHHHHHcCcEEEeec
Q 006349 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NYY----------FQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~-yv~Wn~hEp~~---G-----~yd----------f~g-----~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.|.-+|++|+|+|.. +|+=...++.. | -|| |.. ..++.++++.|++.||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999997 45411111110 1 011 222 1589999999999999999884
No 128
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=54.56 E-value=2e+02 Score=29.98 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCce--eccc--chhHHHHHHHHHHcCcEEEeecCccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQD--RYDLVRFIKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~y--df~g--~~dl~~fl~~a~~~GL~vilr~GPyi 131 (649)
..+...+.++.+++.||-.=.+.+=+.+... .+.| +|+- --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5667889999999999986666555444443 3555 4432 23899999999999999999988877
No 129
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=54.11 E-value=22 Score=37.10 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
+-..+++|++|++.|-+ +|-| ++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 76 evS~~mLkd~G~~~vii----GHSE-RR~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 76 EISAEMLKDLGVKYVII----GHSE-RRQYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred ccCHHHHHHCCCCEEEe----Cccc-ccCccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 33566899999999999 5544 443443 2233444445559999999999987
No 130
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=53.85 E-value=32 Score=29.31 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=32.4
Q ss_pred ceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccE-EEEEEeecC
Q 006349 502 PLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNK-ISLLSTSVG 557 (649)
Q Consensus 502 ~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~-L~ILven~G 557 (649)
..+........+.+.|||..+... + ... .+.|..|.|. |.|.|.+-.
T Consensus 27 v~v~a~~~~~~a~v~vng~~~~~~-~----~~~----~i~L~~G~n~~i~i~Vta~d 74 (88)
T PF12733_consen 27 VTVTATPEDSGATVTVNGVPVNSG-G----YSA----TIPLNEGENTVITITVTAED 74 (88)
T ss_pred EEEEEEECCCCEEEEEcCEEccCC-C----cce----eeEccCCCceEEEEEEEcCC
Confidence 455555667889999999986542 1 112 3457889998 999996554
No 131
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=53.64 E-value=24 Score=43.35 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 006349 107 YDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 107 ~dl~~fl~~a~~~GL~vilr~ 127 (649)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999884
No 132
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=53.38 E-value=31 Score=32.49 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHcCcEEEeecCcccccccC-CCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhc
Q 006349 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN-YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (649)
Q Consensus 107 ~dl~~fl~~a~~~GL~vilr~GPyi~aEw~-~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~ 177 (649)
.||.-||++|++.|+.|++=+-| +++.|. +-|+| ++.-++++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHC
Confidence 39999999999999998766545 556653 11211 345577889988888843
No 133
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=53.35 E-value=67 Score=33.42 Aligned_cols=98 Identities=17% Similarity=0.346 Sum_probs=66.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCee
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~--G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~W 143 (649)
..-.|+++|.-+|++||+.|+. +.-|..+ -+.||+. ...-.+.+++.+.|+-+ |-+|
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmC----------- 74 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMC----------- 74 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchh-----------
Confidence 3456999999999999999999 7777654 4577873 34557888999999743 2222
Q ss_pred eccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 006349 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (649)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QI 192 (649)
|..+....+-|.|+.-++.....+.+-+..-. ++ .|--+|+
T Consensus 75 lSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 75 LSAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 11111122568899888877777777665544 44 3555676
No 134
>PRK09875 putative hydrolase; Provisional
Probab=53.14 E-value=88 Score=33.44 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=58.8
Q ss_pred eEEEecCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHH
Q 006349 38 SVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (649)
Q Consensus 38 ~v~~d~~~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~ 117 (649)
.+++-+..++++..+.. +......-..+.-...|+.+|+.|.+||= |..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHH
Confidence 46677777777663321 11111111334456678899999999883 2333 112469999999999
Q ss_pred HcCcEEEeecCcccccccCCCCCCeeecc
Q 006349 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (649)
Q Consensus 118 ~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 146 (649)
+-|+.||...|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999886333 5777764
No 135
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=52.85 E-value=29 Score=35.24 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
...++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456799999999999 666655 5444 68999999999999999997
No 136
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=51.09 E-value=47 Score=35.23 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=66.3
Q ss_pred EEEEEEeeCCCCCccc-HH---HHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 54 ILISGSIHYPRSTPEM-WP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 54 ~~~~G~~Hy~r~~~~~-W~---~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+-+++..|+...+... .+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 4678888876643222 22 2344333699999998333 4444 6889999999997765444444
Q ss_pred ccc---------cccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 130 YVC---------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 130 yi~---------aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
..+ .+|..--+|.|+.+.=. ....+++...+.--++...+++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 57777778999976200 0122334445566677777777776
No 137
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=50.82 E-value=26 Score=37.67 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=49.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC--ceecccch--hHHHHHHHHHHcCcEEEeecCcccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~--dl~~fl~~a~~~GL~vilr~GPyi~ 132 (649)
..+.-++.++++++.||-+=.+.+=|.+.. ..+ .|.|+-.+ |..+||+.+++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 556678899999999887755544454333 344 67666433 8999999999999999998777763
No 138
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=50.35 E-value=1.2e+02 Score=27.80 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred EEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccC-------CCeeEEecceecCC-CccEEEEE
Q 006349 481 LWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-------NPKLTFSKNVKLRP-GVNKISLL 552 (649)
Q Consensus 481 vWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~-------~~~~~~~~~i~Lk~-G~N~L~IL 552 (649)
+-++..|..+.+.. -++.+. .+|.+.+||||+.|....+... ..... ..+.|.+ +.+.|.|.
T Consensus 48 ~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~--~~v~l~~g~~y~i~i~ 117 (145)
T PF07691_consen 48 VRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTS--GTVTLEAGGKYPIRIE 117 (145)
T ss_dssp EEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEE--EEEEE-TT-EEEEEEE
T ss_pred EEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEE--EEEEeeCCeeEEEEEE
Confidence 56677788776652 355554 7889999999999988775432 11222 2344655 46788888
Q ss_pred EeecC
Q 006349 553 STSVG 557 (649)
Q Consensus 553 ven~G 557 (649)
..+.+
T Consensus 118 y~~~~ 122 (145)
T PF07691_consen 118 YFNRG 122 (145)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 77766
No 139
>PLN00196 alpha-amylase; Provisional
Probab=49.47 E-value=41 Score=37.89 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEc-eeCCC--CCCCCCc-ee-----cccchhHHHHHHHHHHcCcEEEeecC
Q 006349 71 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~y-v~Wn~--hEp~~G~-yd-----f~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
.+.|.-+|++|+++|-+. ++=+. |--.+.. |+ |....+|.++++.|++.||+||+..=
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 567888999999999874 43221 1111211 22 33446999999999999999998853
No 140
>PRK14566 triosephosphate isomerase; Provisional
Probab=49.20 E-value=51 Score=34.75 Aligned_cols=50 Identities=22% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
..+++|++|++.|-+ +|-|.+ ..|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 S~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII----GHSERR-RMYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE----Cccccc-CCCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999999 555544 3333 2345677789999999999999986
No 141
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.13 E-value=25 Score=38.38 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
|.+...-.-..+.++++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 55444434446789999999999999998553320 011223479999999999999999875
No 142
>PLN02877 alpha-amylase/limit dextrinase
Probab=49.09 E-value=33 Score=42.46 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 006349 107 YDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 107 ~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+++++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999884
No 143
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=48.47 E-value=36 Score=42.88 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 006349 107 YDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 107 ~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+|.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 144
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=48.32 E-value=50 Score=39.08 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=52.4
Q ss_pred HHHHHHCCCCEEEEc-ee-----CC--CCCCCCCceec---------ccchhHHHHHHHHHHcCcEEEeecC--------
Q 006349 74 IQKAKDGGLDVIQTY-VF-----WN--GHEPTQGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRIG-------- 128 (649)
Q Consensus 74 l~k~Ka~G~N~V~~y-v~-----Wn--~hEp~~G~ydf---------~g~~dl~~fl~~a~~~GL~vilr~G-------- 128 (649)
++.++.+|+++|-+- ++ |. .-.-..|-||- ....|++++++.|+++||+||+..=
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 346889999999862 32 32 22223466763 2347999999999999999997732
Q ss_pred cccccccCCCCCCeee
Q 006349 129 PYVCAEWNYGGFPVWL 144 (649)
Q Consensus 129 Pyi~aEw~~GG~P~WL 144 (649)
||.-||.+.+-+|.|.
T Consensus 160 dF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 160 DFRLAELAHGDYPGLY 175 (688)
T ss_pred chHHHhhcCCCCCCce
Confidence 3888999999999998
No 145
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=47.53 E-value=1.6e+02 Score=31.25 Aligned_cols=120 Identities=15% Similarity=0.052 Sum_probs=78.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 145 (649)
.-+.-+.+|+.+|.-+. .||+|= +..+-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34567889999999888 999972 233468899999999999999875 332
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCCc
Q 006349 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (649)
Q Consensus 146 ~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (649)
. |-. ..+++ .+...+. + +..-..|..+-|.||-=.-.+.....--+|+...|...++.|.++
T Consensus 111 d---------d~~--~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D---------DIH--DAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c---------chh--hhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 111 11221 2333333 1 112247889999999531111011123479999999999999999
Q ss_pred ceEEecCC
Q 006349 226 PWVMCKQD 233 (649)
Q Consensus 226 P~~~~~~~ 233 (649)
|..+.+++
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 99998876
No 146
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=46.53 E-value=58 Score=26.22 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
..++.++.+|+.|++.|-+ .-|. ++. ...++.+++++.||.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 4688999999999999988 4554 233 356888999999998864
No 147
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=46.30 E-value=80 Score=33.69 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC----------------CCCceecccchhHHHHHHHHHHcCcEEE
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp----------------~~G~ydf~g~~dl~~fl~~a~~~GL~vi 124 (649)
.+.+...+.|+.|...++|++..++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 37788899999999999999999887 754321 1123333 499999999999999999
Q ss_pred eec
Q 006349 125 LRI 127 (649)
Q Consensus 125 lr~ 127 (649)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 664
No 148
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=45.31 E-value=36 Score=36.96 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=54.1
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhH--HHHHHHHHHcCcEEEeecCcccc
Q 006349 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDL--VRFIKLVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl--~~fl~~a~~~GL~vilr~GPyi~ 132 (649)
+|..|. +.+..++.++++++.||.+=.+.+=+.++. ..+.|.|... -|. .++++..++.|++|++..=|+++
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 566788999999999988766655443333 2466766653 377 99999999999999999989887
Q ss_pred c
Q 006349 133 A 133 (649)
Q Consensus 133 a 133 (649)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 149
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.24 E-value=38 Score=36.36 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCC--C---CCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--P---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE--p---~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~ 132 (649)
..+...+.++++|+.||-+=.+.+=+.++. . .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 466678999999999987666555433333 1 2345655432 38999999999999999999877774
No 150
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=45.06 E-value=1.9e+02 Score=32.33 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=64.3
Q ss_pred CCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCe----EeecC-ChhHHHHHHHHHHHH
Q 006349 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRTD-NGPFKAAMHKFTEKI 170 (649)
Q Consensus 96 p~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R~~-~~~y~~~~~~~~~~i 170 (649)
+..|.|||+....=+.|++.|++.|...++-+- | -.|.|+...... ...++ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS------N---SPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS------N---SPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-------S---SS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee------c---CCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999999877777899999999999776541 1 367777653210 00011 234567777788888
Q ss_pred HHHHHhcccccccCCceEEeccccccCCccccCC---------CChHHHHHHHHHHHhhcCCCcceEEec
Q 006349 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG---------APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (649)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~---------~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (649)
+++++.+ |=+|=-+--=||.... +..+ +...+.++.|....++.|+..-+..|.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 8887633 3355555666998632 2111 123567888888888888876555444
No 151
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=44.81 E-value=96 Score=31.96 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 006349 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (649)
Q Consensus 98 ~G~ydf~-g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~ 176 (649)
.|...+. ...++..+++.|++.|++|++.+|= |..+.+-. + ..++. .-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~~-~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFTA-A---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcchh-h---------hcCHH---HHHHHHHHHHHHHHH
Confidence 4666654 3457889999999999999999862 22111000 1 12232 335688899998986
Q ss_pred cccccccCCceEEeccccccC
Q 006349 177 EKLFQTQGGPIILSQIENEFG 197 (649)
Q Consensus 177 ~~~~~~~gGpII~~QIENEyg 197 (649)
+++ =++.|+=|+.
T Consensus 98 ~~~--------DGIdiDwE~~ 110 (253)
T cd06545 98 YNL--------DGIDVDLEGP 110 (253)
T ss_pred hCC--------CceeEEeecc
Confidence 654 2456666764
No 152
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.66 E-value=32 Score=35.50 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCC----CceecccchhHHHHHHHHHHcCcEEEeec-Ccc
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI-GPY 130 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~----G~ydf~g~~dl~~fl~~a~~~GL~vilr~-GPy 130 (649)
.+++.++.++++|+.+|.+ |..+.... -.+... ...|.++.+.|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 5567789999999999966 22232111 112211 2368899999999999999997 443
No 153
>PRK15492 triosephosphate isomerase; Provisional
Probab=44.54 E-value=48 Score=34.87 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
-...++|++|++.|-+ +|-|. +..|. +-+..+.+=++.|.++||.+|++.|
T Consensus 85 vSa~mLkd~G~~~vii----GHSER-R~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 85 ISPLMLKEIGTQLVMI----GHSER-RHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CCHHHHHHcCCCEEEE----Ccccc-ccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 3456899999999999 55554 44443 3345667788999999999999986
No 154
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.19 E-value=1.4e+02 Score=31.92 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCC-CCC--CCceecccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-EPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~h-Ep~--~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
+.+.-.+.|+.|...|+|.+..|+- +.-+ |-. +|.|. ..++.++++.|++.||-||-.+--.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4567899999999999999998752 3222 111 23333 35999999999999999997654333444
No 155
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=42.96 E-value=40 Score=36.58 Aligned_cols=68 Identities=6% Similarity=0.043 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~aE 134 (649)
+.+.-++.++++++.||.+=.+.+=+.+ ....+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 5566788999999999887666544332 234456766543 2889999999999999999998998753
No 156
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=42.75 E-value=70 Score=33.56 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=59.0
Q ss_pred ccccceeEEEecCcEEECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc--cchh
Q 006349 32 ISFVKASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYD 108 (649)
Q Consensus 32 ~~~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~--g~~d 108 (649)
..+....|.+. .+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|+|=+...| |.|. |..-
T Consensus 7 ~~~~~s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~g 77 (260)
T TIGR01361 7 FHPEKTVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEG 77 (260)
T ss_pred cCCCCCEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHH
Confidence 33444556663 35566555666777 2222 4555667788899999998888887754443 4455 4567
Q ss_pred HHHHHHHHHHcCcEEEeec
Q 006349 109 LVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 109 l~~fl~~a~~~GL~vilr~ 127 (649)
|..+-+.|++.||.++-.|
T Consensus 78 l~~l~~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 78 LKLLRRAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHHHHHHhCCCEEEee
Confidence 8888899999999998775
No 157
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=42.73 E-value=2.5e+02 Score=30.60 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCCceecc---cchhHHHHHHHHHHcCcEEEeec
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp------~~G~ydf~---g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.+...+.|..|....+|+...++- |.+--+ +.|.|.-. -..|+.++++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36788999999999999999998763 544322 12332211 13599999999999999999763
No 158
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=42.71 E-value=1.2e+02 Score=33.46 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=62.2
Q ss_pred hhcccccccceeEEEecCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc-
Q 006349 27 FCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD- 105 (649)
Q Consensus 27 ~~~~~~~~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g- 105 (649)
+.|-+..+....|.+ ..+.+.|...+++.|..- --..+.-.+..+.+|+.|+..++-..|= |+.--|.|.|
T Consensus 95 ~~s~~~~~~~~~~~~--~~~~~g~~~~~~iaGpc~--iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~ 166 (360)
T PRK12595 95 LVSRKKKPEDTIVDV--KGEVIGDGNQSFIFGPCS--VESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGL 166 (360)
T ss_pred HhhCccCCCCCEEEE--CCEEecCCCeeeEEeccc--ccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCC
Confidence 345555566666666 346666554444656510 0135556777888999999999976554 4444466765
Q ss_pred -chhHHHHHHHHHHcCcEEEeec
Q 006349 106 -RYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 106 -~~dl~~fl~~a~~~GL~vilr~ 127 (649)
...+..+-+.|++.||.++-.|
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEEee
Confidence 4678889999999999998775
No 159
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=42.19 E-value=92 Score=36.53 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=35.4
Q ss_pred ccEEEEEECCEEEEEEECccC---CCeeEEecceecCCCccEEEEEEeecCCcc
Q 006349 510 GHALQVFINGQLSGTVYGSLE---NPKLTFSKNVKLRPGVNKISLLSTSVGLPN 560 (649)
Q Consensus 510 ~D~~~VfVNG~~VGt~~~~~~---~~~~~~~~~i~Lk~G~N~L~ILven~Gr~N 560 (649)
.....|+|||+.+|+..=... ...++++.+..|..|.|+|.|.+..--..+
T Consensus 62 ~S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~~~~~~~ 115 (605)
T PF03170_consen 62 RSQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFEFIGHYTDD 115 (605)
T ss_pred cceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEEEEecccCc
Confidence 357899999999998763211 234555555558889999999876554333
No 160
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.14 E-value=55 Score=35.18 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=46.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC---CCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp---~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~ 132 (649)
.+.-.+.++++++.||-+=.+.+=+.+..- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 346688899999999977666543222221 1234555422 38999999999999999999888874
No 161
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.21 E-value=44 Score=35.90 Aligned_cols=73 Identities=7% Similarity=0.108 Sum_probs=52.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 006349 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (649)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~a 133 (649)
+|..|. ..+..++.++++++.+|-.=.+.+=+.+.. ..+.|+|+-. -|..+|++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 344454 566678999999999987666554432222 3456666543 389999999999999999998888753
No 162
>PRK14567 triosephosphate isomerase; Provisional
Probab=41.17 E-value=59 Score=34.12 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
.-.++|++|++.|-+ +|-|.+ ..|. +-+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~yvii----GHSERR-~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI----GHSERR-SLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE----Cccccc-CccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999999 555544 3443 3345677788999999999999987
No 163
>PLN02561 triosephosphate isomerase
Probab=41.09 E-value=58 Score=34.16 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
-...++|++|++.|-+ +|-|.+ ..|. +-+..+.+=++.|.++||.+|++.|
T Consensus 79 vS~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 79 ISAEMLVNLGIPWVIL----GHSERR-ALLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CCHHHHHHcCCCEEEE----Cccccc-CccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 3556899999999999 555544 3443 2245677778999999999999987
No 164
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.98 E-value=1.7e+02 Score=32.33 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=64.7
Q ss_pred Hhhcccccc-cceeEEEec--CcEEECC-EEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc
Q 006349 26 SFCSWEISF-VKASVSYDH--KAVIING-QKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN 100 (649)
Q Consensus 26 ~~~~~~~~~-~~~~v~~d~--~~~~idG-~p~~~~~G~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ 100 (649)
.+.+-++.. ....+.++. ....+.| +|++++.| +=-+ .++.-.+.-+.+|+.|...++-+.|= |+---
T Consensus 71 KlaSre~~~~~~~~v~v~~~~~~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp 143 (352)
T PRK13396 71 KRASREYRHGEASEVVVPTPNGPVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSP 143 (352)
T ss_pred chhhhhcCCcCCceEEEecCcCCeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCC
Confidence 466777765 555565653 3455554 66788888 2122 56667788889999999999986665 44444
Q ss_pred eecccc--hhHHHHHHHHHHcCcEEEeec
Q 006349 101 YYFQDR--YDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 101 ydf~g~--~dl~~fl~~a~~~GL~vilr~ 127 (649)
|.|.|. .-|.-+-+.+++.||.++-.+
T Consensus 144 ~sf~G~g~~gl~~L~~~~~e~Gl~~~tev 172 (352)
T PRK13396 144 YAFQGHGESALELLAAAREATGLGIITEV 172 (352)
T ss_pred cccCCchHHHHHHHHHHHHHcCCcEEEee
Confidence 777753 456666677889999988775
No 165
>PLN02826 dihydroorotate dehydrogenase
Probab=39.83 E-value=5.9e+02 Score=28.63 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=38.4
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCC--CCEEEEceeCCCCCCC-CCceecccchhHHHHHHHHH
Q 006349 55 LISGSIHYPRSTPEMWPDLIQKAKDGG--LDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQ 117 (649)
Q Consensus 55 ~~~G~~Hy~r~~~~~W~~~l~k~Ka~G--~N~V~~yv~Wn~hEp~-~G~ydf~g~~dl~~fl~~a~ 117 (649)
+++.++.-...+.+.|+|..+.++.++ .+.+++ |.--|. ||.=+......+.++++.++
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylel----NiScPNtpglr~lq~~~~l~~ll~~V~ 249 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVI----NVSSPNTPGLRKLQGRKQLKDLLKKVL 249 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEE----ECCCCCCCCcccccChHHHHHHHHHHH
Confidence 577777665555556788777777776 777777 665553 45434444456777777664
No 166
>PLN02784 alpha-amylase
Probab=39.80 E-value=67 Score=39.34 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCC--cee-------cccchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G--~yd-------f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.+..++++|+++|-+.=+-....+ .| .+| |....+|.++++.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55788899999999998533222111 11 122 3345799999999999999999884
No 167
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=39.50 E-value=1.1e+02 Score=36.47 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
-..+++|++|++.|-+ +|-| ++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 472 VSa~mLkd~G~~~vii----GHSE-RR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 472 ISGPMLAEIGVEYVII----GHSE-RRQYFGET-DELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred CCHHHHHHcCCCEEEE----Cccc-ccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 3456899999999999 4444 44444322 33455556999999999999976
No 168
>PLN02429 triosephosphate isomerase
Probab=39.18 E-value=51 Score=35.65 Aligned_cols=50 Identities=18% Similarity=0.028 Sum_probs=34.2
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
..+++|++|++.|-+ +|-|.+ -.|.=+ +..+.+=+..|.++||.+|+++|
T Consensus 139 Sa~mLkd~Gv~~Vii----GHSERR-~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL----GHSERR-HVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe----CccccC-CCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 456799999999999 555544 334311 22333334449999999999987
No 169
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=38.51 E-value=1.3e+02 Score=32.61 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=54.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 006349 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~ 132 (649)
+|..|. +.+..++.++++++.+|-.=.+++=|.++. ..+.|.|... -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 667788999999999987666655555543 3466666543 37899999999999999998889887
No 170
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=37.69 E-value=66 Score=34.55 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeC---CCCCCCCCcee-ccc----chhHHHHHHHHHHcCcEEEeec
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFW---NGHEPTQGNYY-FQD----RYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~W---n~hEp~~G~yd-f~g----~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+..-.++++.+|..|+|++-.=+== ++.-|....+. ..+ -.|+.-||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 45566889999999999998652210 01111221111 000 1389999999999999999995
No 171
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=37.54 E-value=37 Score=32.81 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeC-CCCCCCC--CceecccchhHHHHHHHHHHcCcEEEeecCccc
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~W-n~hEp~~--G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi 131 (649)
.+..++.++.++++|+..|.+...+ ..+.... ..++. -...|.++.+.|+++|+.+.+.+-|+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWER-LAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHH-HHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHH-HHHHHHHHHhhhhhhcceEEEecccCc
Confidence 3567888999999999999885442 1121111 11111 124788899999999999999986543
No 172
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=37.05 E-value=75 Score=31.43 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=55.3
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCcee--ccc-chhHHHHHHHHHHcCcEEEeec
Q 006349 56 ISGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY--FQD-RYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 56 ~~G~~Hy~r~~-----~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~yd--f~g-~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.-|.+||++.. .++.+.-++.++..+... ...|--.|..++.+. .+- ...+.+|++..+++|..+++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 34999998653 455677788888765432 112334444333322 111 2467899999999999999988
Q ss_pred Ccccc----ccc---CCCCCCeeeccC
Q 006349 128 GPYVC----AEW---NYGGFPVWLKYV 147 (649)
Q Consensus 128 GPyi~----aEw---~~GG~P~WL~~~ 147 (649)
+++-. +.. +...+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 87421 111 145789999764
No 173
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=37.00 E-value=1.3e+02 Score=27.43 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=39.5
Q ss_pred EEEEEEeecCCCcccccCCCCceEEEcccccEEEEEECCEEEEEEECccCCCeeEEecceecCCC-ccEEEEEEe
Q 006349 481 LWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPG-VNKISLLST 554 (649)
Q Consensus 481 vWYrt~v~l~~~~~~~~~~~~~~L~l~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G-~N~L~ILve 554 (649)
+-++..|..+.+. .-++.+ ...|.+.+||||+.|-...+....+ ......+.|.+| .+.|.|.-.
T Consensus 46 ~~~~g~i~~~~~G-------~y~f~~-~~~~~~~l~Idg~~vid~~~~~~~~-~~~~~~v~l~~g~~~~i~v~y~ 111 (136)
T smart00758 46 VRWTGYLKPPEDG-------EYTFSI-TSDDGARLWIDGKLVIDNWGKHEAR-PSTSSTLYLLAGGTYPIRIEYF 111 (136)
T ss_pred EEEEEEEECCCCc-------cEEEEE-EcCCcEEEEECCcEEEcCCccCCCc-cccceeEEEeCCcEEEEEEEEE
Confidence 6678888876554 246777 4688899999999987654322100 111123556666 466666553
No 174
>PRK09267 flavodoxin FldA; Validated
Probab=36.99 E-value=2.9e+02 Score=26.33 Aligned_cols=111 Identities=7% Similarity=0.012 Sum_probs=63.9
Q ss_pred eeehhhhcchhHHHHHHHHHhhcccccccceeEEEecC-cEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEE
Q 006349 7 LVKWKMLGANVKVLMLVLLSFCSWEISFVKASVSYDHK-AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVI 85 (649)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V 85 (649)
++=..+.|-.-++...++=.|...+ ...+..+.. ...++.-..++++...|....++..|.+-+.+++...++-.
T Consensus 6 IiY~S~tGnT~~vA~~Ia~~l~~~~----~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k 81 (169)
T PRK09267 6 IFFGSDTGNTEDIAKMIQKKLGKDV----ADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGK 81 (169)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCc----eEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCC
Confidence 3344556665565655544442211 112222221 12344556688999999878778889999998888777777
Q ss_pred EEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 006349 86 QTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 86 ~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi 124 (649)
.+.+| ....... |-.....-+..+.+++++.|..++
T Consensus 82 ~vaif-g~g~~~~--~~~~~~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 82 KVALF-GLGDQED--YAEYFCDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred EEEEE-ecCCCCc--chHHHHHHHHHHHHHHHHCCCEEE
Confidence 77777 3221111 111112346677888899997765
No 175
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.99 E-value=1.1e+02 Score=32.63 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=68.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceeccc---chhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g---~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~ 142 (649)
.-+.-++-+.-+.++|+.-|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. + |+.||-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 556678889999999999999877787632 234667763 4699999999999999888874 2 22222111
Q ss_pred eecc-------------CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 006349 143 WLKY-------------VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (649)
Q Consensus 143 WL~~-------------~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII 188 (649)
=|.+ +.++++---+. --+.+-+|+++|++.-++++|+..=||++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 1111 12222211111 125677899999999999888766666553
No 176
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.93 E-value=70 Score=34.84 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=50.3
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEce----------eCCCCCC--C-------CCceecccc---hhHHHHHH
Q 006349 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEP--T-------QGNYYFQDR---YDLVRFIK 114 (649)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~~yv----------~Wn~hEp--~-------~G~ydf~g~---~dl~~fl~ 114 (649)
+|..|. ..+.-++.++++++.||.+=-+++ .|+...- . -+.++|... -|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 456678899999999997666544 3443221 1 133334311 27999999
Q ss_pred HHHHcCcEEEeecCcccc
Q 006349 115 LVQQAGLYVHLRIGPYVC 132 (649)
Q Consensus 115 ~a~~~GL~vilr~GPyi~ 132 (649)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 177
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=36.80 E-value=97 Score=36.59 Aligned_cols=110 Identities=11% Similarity=0.150 Sum_probs=72.6
Q ss_pred EEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc-
Q 006349 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP- 129 (649)
Q Consensus 51 ~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP- 129 (649)
++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|-.+++ -+ .+.+|++.|++.++.+|.-+-|
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd----------~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYD----------EE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCC----------HH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 455788888887766555444566666789999999955443 33 6789999998888888877766
Q ss_pred -------ccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 130 -------YVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 130 -------yi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
++..+|..-=+|.|+.+.=. ... +...++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 23233555557988876200 011 223566677777777777666
No 178
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.62 E-value=59 Score=35.19 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=51.3
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 006349 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (649)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~a 133 (649)
+|..|. +.+..++.++++++.||-+=.+.+=+.+.. .-+.|+|.-. -|..++++..++.|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 355453 556678999999999987655444333322 3345665532 378999999999999999998888753
No 179
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=36.32 E-value=19 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHH
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~ 118 (649)
....|-.-+|.+-. .||.|-.|||. +|.+||++|-|
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 45568887777654 58999999999 99999999988
No 180
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.05 E-value=56 Score=33.77 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCC-CceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~-G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
+.+++.++.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4467889999999999998631100001111 01110 114688889999999999999873
No 181
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=36.04 E-value=58 Score=39.03 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=40.8
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCCC---C-----------------ceeccc-----chhHHHHHHHHHHcCcEEEee
Q 006349 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----------------NYYFQD-----RYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~-yv~Wn~hEp~~---G-----------------~ydf~g-----~~dl~~fl~~a~~~GL~vilr 126 (649)
.|.-+|++|+++|+. +|+.-..++.. | .|--+. .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999996 67755555432 2 222222 257888999999999999998
Q ss_pred c
Q 006349 127 I 127 (649)
Q Consensus 127 ~ 127 (649)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 182
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.76 E-value=53 Score=33.75 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+..++.++.++++|+.+|.+...+......+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346888999999999999874322111111112111112467788899999999999987
No 183
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=35.69 E-value=2.1e+02 Score=30.39 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeec
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~ 127 (649)
..++-...-+..|+.|.+.++- ...-|+---|+|.|. .-|.-.-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 4555677788999999999998 555677777999864 667777788899999988774
No 184
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=34.82 E-value=3.1e+02 Score=30.36 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=51.6
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCe------Eeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 006349 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (649)
Q Consensus 116 a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~------~~R~-~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII 188 (649)
+-..|+.|+.-| |+ .|+|+...-.+ ++|. ..+.|-++..+|+. .++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHH----HHH------hCCCcee
Confidence 556788888887 65 89999763221 2332 24455444444433 334 4677999
Q ss_pred EeccccccCCccccCCCC---hHHHHHHHHHHHhhcC
Q 006349 189 LSQIENEFGPVEWDIGAP---GKAYAKWAAQMAVGLN 222 (649)
Q Consensus 189 ~~QIENEyg~~~~~~~~~---~~~y~~~l~~~~~~~g 222 (649)
+..|.||..... .|+.| -.+.++.+++-+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999987321 22222 3566777777665554
No 185
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.76 E-value=79 Score=33.52 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC--------CCCceecccc--hhHHHHHHHHHHcCcEEEeecCccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--------TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp--------~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi 131 (649)
+.+.-++.++++|+.||-+=-+++=...|.- .-+.|.|+-. -|..++++..++.|++|++.+=|++
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5667789999999999887666553333321 2245666533 3899999999999999998875543
No 186
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.41 E-value=1.8e+02 Score=31.82 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC----------------------------CCCceecccchhHHHH
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------------------TQGNYYFQDRYDLVRF 112 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp----------------------------~~G~ydf~g~~dl~~f 112 (649)
.+.+...+.|..|...++|+...++. |.+--+ ..|.|- ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36888999999999999999998773 432111 123333 3599999
Q ss_pred HHHHHHcCcEEEeec
Q 006349 113 IKLVQQAGLYVHLRI 127 (649)
Q Consensus 113 l~~a~~~GL~vilr~ 127 (649)
++.|++.|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999764
No 187
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.04 E-value=56 Score=33.35 Aligned_cols=60 Identities=12% Similarity=-0.079 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.+++.++.++++|+.+|.+..-...-++..-+..-.-...+.++.+.|++.|+.+.+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567788999999999999863221100000001101112467888999999999999987
No 188
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=33.99 E-value=62 Score=33.66 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=36.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~a 133 (649)
-.+.++++|+.|+ -|+.+| +|.+ +.++.|++.|-..| |-.|||..+
T Consensus 115 l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 115 LKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 4667888999998 566643 6776 78899999999876 999999865
No 189
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.50 E-value=90 Score=32.75 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=44.8
Q ss_pred CEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 50 GQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 50 G~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
| ++.+..=.+|+.-.-.-.=+-...++|++|++.|-+ +|-|.+. .|+ +-...+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~-~~~-E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL-YFG-ETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc-ccc-cchHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 444443345553321111123455799999999999 6555443 222 2233566778999999999999976
No 190
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=33.28 E-value=82 Score=35.24 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEE-ceeCC---CCCCCCCce-----ecccchhHHHHHHHHHHcCcEEEeec
Q 006349 72 DLIQKAKDGGLDVIQT-YVFWN---GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~-yv~Wn---~hEp~~G~y-----df~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.|.-+|.+|+++|-+ +++=+ .|--..-.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999965 33311 121110000 46677899999999999999999773
No 191
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.77 E-value=81 Score=24.52 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~v 123 (649)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..++.|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44567888899999999998875 3333234455555433 4889999999999765
No 192
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=32.37 E-value=2.6e+02 Score=31.54 Aligned_cols=85 Identities=18% Similarity=0.109 Sum_probs=58.5
Q ss_pred CcEEECCEEEEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--EEceeCCCCCCCCCceecccchhHHHHHHHH
Q 006349 44 KAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDV--I--QTYVFWNGHEPTQGNYYFQDRYDLVRFIKLV 116 (649)
Q Consensus 44 ~~~~idG~p~~~~~G~~Hy~r~~---~~~W~~~l~k~Ka~G~N~--V--~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a 116 (649)
+...+.+.-|+|+.+.-+-++.+ ++.-+.-.+.+++.|++. | ...-.-|+-.|.+..++++ ..-+.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 34566778888888887766543 344455567788888763 3 2222277777888777776 34577779999
Q ss_pred HHcCcE-EEeecCc
Q 006349 117 QQAGLY-VHLRIGP 129 (649)
Q Consensus 117 ~~~GL~-vilr~GP 129 (649)
++.|.. |++-||-
T Consensus 228 ~~LGa~~VV~HPGs 241 (413)
T PTZ00372 228 EQLGIKLYNFHPGS 241 (413)
T ss_pred HHcCCCEEEECCCc
Confidence 999998 5677874
No 193
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.02 E-value=98 Score=35.18 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=46.4
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
..|.+.|.+.-++.++++.+.|++.|+++.+-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45667788888999999999999999998876654 258889999999999886653
No 194
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=31.92 E-value=89 Score=34.89 Aligned_cols=69 Identities=14% Similarity=0.305 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc--hhHHHHHHHHHHcCcEEEeecCccccccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAEW 135 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~aEw 135 (649)
..+...+.++.+++.|+-.=...+-..+.. ..+.|.|+.. -|+.++++.+++.|+++++..-|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 456678999999999998777655433322 3445555432 28999999999999999999988886654
No 195
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=31.87 E-value=86 Score=28.49 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=26.0
Q ss_pred cEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEe
Q 006349 511 HALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLST 554 (649)
Q Consensus 511 D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILve 554 (649)
-...|||||+++|++.. ..|.. +.+.+|+++|+...+
T Consensus 41 ~~~~v~vdg~~ig~l~~----g~y~~---~~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKN----GGYFY---VEVPPGKHTISAKSE 77 (117)
T ss_pred ccceEEECCEEEEEeCC----CeEEE---EEECCCcEEEEEecC
Confidence 34568999999999764 23543 237889988887444
No 196
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=31.87 E-value=1.6e+02 Score=33.23 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=58.0
Q ss_pred eCCCC--CcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCC----CCceec-----ccc-----hhHHHHHHHHH-HcCcE
Q 006349 61 HYPRS--TPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QGNYYF-----QDR-----YDLVRFIKLVQ-QAGLY 122 (649)
Q Consensus 61 Hy~r~--~~~~W~~~l~k~Ka~G~N~V~~-yv~Wn~hEp~----~G~ydf-----~g~-----~dl~~fl~~a~-~~GL~ 122 (649)
+.+++ +-+.|++.|+.++++|.|+|.. ++---...-+ ..+..| ... .++.++++.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 4468999999999999999984 2211111001 111111 111 48999999885 79999
Q ss_pred EEeecCcccccccCCCC-CCeeeccCCCeEeecCChhHHHHH
Q 006349 123 VHLRIGPYVCAEWNYGG-FPVWLKYVPGIEFRTDNGPFKAAM 163 (649)
Q Consensus 123 vilr~GPyi~aEw~~GG-~P~WL~~~p~~~~R~~~~~y~~~~ 163 (649)
++... + |+.-. ==.||.++|+.-.-..+.|+++..
T Consensus 93 ~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 76543 1 22111 236899999865555566666544
No 197
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=31.57 E-value=1.8e+02 Score=31.46 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred cccceeEEEecCcEEECCEEEEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhH
Q 006349 33 SFVKASVSYDHKAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDL 109 (649)
Q Consensus 33 ~~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r~~---~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl 109 (649)
+...-.|++-+..+.+|. .=+.++.=+-+-.. -+.-...+...++.|.+||=. +.+- .--||.
T Consensus 12 a~~~lGvTl~HEHl~~~~--~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~~----~~GRdv 77 (316)
T COG1735 12 APADLGVTLMHEHLFIDP--YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATNI----GIGRDV 77 (316)
T ss_pred CHHHccceeehhhhccch--HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCcc----ccCcCH
Confidence 334455666677777775 11111111111111 111344567777789998865 2220 112689
Q ss_pred HHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 006349 110 VRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIIL 189 (649)
Q Consensus 110 ~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~ 189 (649)
.++.+.+++.||.+|...|.|.-+.|+ .|+...| ++.+.+-+++.+.. .. . |+=|.
T Consensus 78 ~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi---~-gT~ik 133 (316)
T COG1735 78 LKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI---A-GTGIK 133 (316)
T ss_pred HHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc---c-CCccc
Confidence 999999999999999999999988864 6665433 44555555555551 11 1 22222
Q ss_pred eccccccCCccccCCCChHHHHHHHHHHHhhc-CCCcceEEecC
Q 006349 190 SQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQ 232 (649)
Q Consensus 190 ~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~~ 232 (649)
.=|=-|-|.+.. .. +.=.+.|+..++.. -+++|+.+.++
T Consensus 134 AGiIk~~~~~~~-iT---p~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 134 AGIIKEAGGSPA-IT---PLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred cceeeeccCccc-CC---HHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 222235554321 11 22233344444432 35789877664
No 198
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.17 E-value=2.6e+02 Score=29.23 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCeeeccC
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYV 147 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~v--ilr~GPyi~aEw~~GG~P~WL~~~ 147 (649)
-.+.++.+++.|+++|+.++- .|.--........+..+|-+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee----------------
Confidence 366899999999999999653 22111111112236778888999998863 33334543
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 148 p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
+.+-+.|+.-++...+.+.+.++.-+
T Consensus 73 --iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 --INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12344567766666666666655555
No 199
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=30.81 E-value=63 Score=35.30 Aligned_cols=115 Identities=21% Similarity=0.333 Sum_probs=64.7
Q ss_pred EEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHH
Q 006349 84 VIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAM 163 (649)
Q Consensus 84 ~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~ 163 (649)
.|.+.|+|+++--+. -=...++.|+++|+.|+--+ .=||. +-+.|+.. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 377888898854221 01278999999999997432 23555 33445542 1 111 11 123
Q ss_pred HHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHhhc--CCCcceEE
Q 006349 164 HKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL--NTGVPWVM 229 (649)
Q Consensus 164 ~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vP~~~ 229 (649)
.++.++|+++.+.+++ + | +.+-+||..+... ..+.=.+|++.|++.+++. +..|-|+.
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5678888888886554 2 3 6777788763110 0112245667777777654 33444554
No 200
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=30.67 E-value=54 Score=31.09 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=17.0
Q ss_pred CCCceEEEEEeeCCCCC--Cceeec
Q 006349 626 KQPMTWYKTTFNVPPVL--GATGLD 648 (649)
Q Consensus 626 ~~~ltWYKttF~~P~g~--~pv~Ld 648 (649)
.....||+++|++|+.. ..+.|.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~ 90 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLR 90 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEE
Confidence 46789999999999742 355553
No 201
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=30.35 E-value=57 Score=35.24 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcE--EE-eec
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VH-LRI 127 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~--vi-lr~ 127 (649)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|.+.||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788788888999999885 889999999999996 33 665
No 202
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=30.09 E-value=71 Score=33.09 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCcccccc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAE 134 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~aE 134 (649)
+.-.+.++++|+.|+. |+. +.+|.+ +.++.|++.|-..| |-+|||..+-
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcCC
Confidence 3346678888888884 665 467776 77888899998876 8899987643
No 203
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=30.01 E-value=48 Score=36.91 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=62.0
Q ss_pred HHHHHhhcccccccceeEEEec--CcEEECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCC--CCEEEEceeCCCCCC
Q 006349 22 LVLLSFCSWEISFVKASVSYDH--KAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGG--LDVIQTYVFWNGHEP 96 (649)
Q Consensus 22 ~~~~~~~~~~~~~~~~~v~~d~--~~~~idG~p~~~~~G~~Hy~r~-~~~~W~~~l~k~Ka~G--~N~V~~yv~Wn~hEp 96 (649)
.++.+||.. ...|-.|. +.=++||-+ +-.++.+.++. ..+.-++.|++-+..| -..|-|
T Consensus 114 ~~i~~l~~~-----~dli~~D~lnHASiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt--------- 177 (388)
T COG0156 114 GLLSALLKK-----GDLIFSDELNHASIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT--------- 177 (388)
T ss_pred HHHHHhcCC-----CcEEEEechhhhhHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE---------
Confidence 344555544 34444443 233778877 56667777775 5577788888876554 455555
Q ss_pred CCCceecccc-hhHHHHHHHHHHcCcEEEee
Q 006349 97 TQGNYYFQDR-YDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 97 ~~G~ydf~g~-~dl~~fl~~a~~~GL~vilr 126 (649)
+|+|-.+|. .+|.+++++|+++|.++++.
T Consensus 178 -egVfSMdGdiApL~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 178 -EGVFSMDGDIAPLPELVELAEKYGALLYVD 207 (388)
T ss_pred -eccccCCCCcCCHHHHHHHHHHhCcEEEEE
Confidence 899999997 89999999999999888776
No 204
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=29.96 E-value=1.3e+02 Score=32.22 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=56.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcE--EEeecCc--------ccccccCCCCCCe
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VHLRIGP--------YVCAEWNYGGFPV 142 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~--vilr~GP--------yi~aEw~~GG~P~ 142 (649)
.|++-.++|.+.+-|-. -||.+ .+.+|++.|++.|+. |+.-+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 45555568888777722 34444 788999999999954 5555555 34 5777788999
Q ss_pred eeccCCCeEeecCC-hhHHHHHHHHHHHHHHHHHh
Q 006349 143 WLKYVPGIEFRTDN-GPFKAAMHKFTEKIVSMMKA 176 (649)
Q Consensus 143 WL~~~p~~~~R~~~-~~y~~~~~~~~~~i~~~i~~ 176 (649)
|+.+.=. .. .++ ...+++--++..++++.+.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9976310 01 133 33555566677777777663
No 205
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.19 E-value=88 Score=32.75 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCC---CCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNG---HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~---hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
++.+++||++|++.|...+- .. ++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 67899999999999988543 11 11111122333 566778999999998643
No 206
>PRK06703 flavodoxin; Provisional
Probab=29.12 E-value=3.5e+02 Score=25.24 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=60.3
Q ss_pred ECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 48 idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+..-..++++...+-.-.+|..+.+-+..+++.-++.....+|-...-. |. ......+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665544433345666777788887766665556566322110 11 022456677788899999887764
Q ss_pred CcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 128 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 128 GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
.. +....++..-++..++|.++|++.++
T Consensus 121 --~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 --LK------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred --eE------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 00 11111234677888889998887766
No 207
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=29.05 E-value=1.8e+02 Score=35.39 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=33.2
Q ss_pred ccEEEEEECCEEEEEEECc----cCCCeeEEecceecCCCccEEEEEEeecC
Q 006349 510 GHALQVFINGQLSGTVYGS----LENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (649)
Q Consensus 510 ~D~~~VfVNG~~VGt~~~~----~~~~~~~~~~~i~Lk~G~N~L~ILven~G 557 (649)
.....|+|||+++|+..=. ......+++.+..+..|.|+|++.....-
T Consensus 114 ~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~g~N~L~~~~~~~~ 165 (756)
T PRK11114 114 LSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFITDFNRLRLEFIGHY 165 (756)
T ss_pred CCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcCCCceEEEEEecCC
Confidence 5689999999999987521 11234455554457789999999866443
No 208
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.93 E-value=1.2e+02 Score=32.31 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC--CCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp--~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3677889999999999999999875422111 11211122 2378899999999999887663
No 209
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.26 E-value=4.1e+02 Score=25.85 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHH
Q 006349 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMA 218 (649)
Q Consensus 163 ~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~ 218 (649)
+.+-+.+++..++ ..+.++|.+ .||.|+-.-.+++..+.|.+.|-.+-
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~ln 148 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLN 148 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444555666666 245688887 49998633234556788888775543
No 210
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=28.22 E-value=95 Score=31.22 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCce-ecccchhHHHHHHHHHHcC--cEEEeecCccccc--ccC
Q 006349 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAG--LYVHLRIGPYVCA--EWN 136 (649)
Q Consensus 62 y~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~y-df~g~~dl~~fl~~a~~~G--L~vilr~GPyi~a--Ew~ 136 (649)
+.++..++--..-+.+|+.||.++-.--.=..|...+=-| .-.| .+ =+-..+.. =++|+||||..|- |.+
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--Ev---E~~v~eL~F~~~~i~RPG~ll~~R~esr 177 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EV---ERDVIELDFKHIIILRPGPLLGERTESR 177 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hh---hhhhhhccccEEEEecCcceeccccccc
Confidence 4577888888899999999999876533333333222011 0112 11 11222222 3589999998874 444
Q ss_pred CCC
Q 006349 137 YGG 139 (649)
Q Consensus 137 ~GG 139 (649)
-|+
T Consensus 178 ~ge 180 (238)
T KOG4039|consen 178 QGE 180 (238)
T ss_pred ccc
Confidence 444
No 211
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=28.11 E-value=1.8e+02 Score=32.93 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
....+..++.++..++.|.++=-+|+. |-|.|.=-.|+=+ .+.+++++|++++++||..
T Consensus 172 ~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 172 QITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLISD 230 (468)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEEE
Confidence 344455666666666667776556777 7888886666655 8999999999999998855
No 212
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=27.84 E-value=47 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=35.6
Q ss_pred EEEEEEeeC------CCCCcccHHHHHHHHHHC-CCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE
Q 006349 54 ILISGSIHY------PRSTPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 54 ~~~~G~~Hy------~r~~~~~W~~~l~k~Ka~-G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi 124 (649)
++.||. |. .+++.+-+++..++--.+ |+|-++- ||...++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 346666 73 334555566666666654 8888877 566666544 367899999999999883
No 213
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.80 E-value=23 Score=35.17 Aligned_cols=65 Identities=28% Similarity=0.469 Sum_probs=44.1
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC--ceecccchhHHHHHHHHHHcCcEEEee
Q 006349 54 ILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 54 ~~~~G~~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
..-+|--.|.|+ .|-.-+ +-+.++|++.+-+ -.--..| -|||-...+|.+|+++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 344555566665 343333 3467789887654 1112334 599988899999999999999988765
No 214
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.71 E-value=1.1e+02 Score=31.59 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
++.+++++++|.+.|.+. --|-+ . ..++.++++.|+++||.+++-..|
T Consensus 91 ~~~i~~~~~~Gadgvii~-----dlp~e----~--~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 91 DNFLNMARDVGADGVLFP-----DLLID----Y--PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCCCC----c--HHHHHHHHHHHHHcCCCEEEEECC
Confidence 345788999999999981 01111 0 016789999999999998877644
No 215
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=27.61 E-value=2.7e+02 Score=31.37 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHHHHHHCCCCEEEEcee----CCCCCCCCCceecccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCee
Q 006349 70 WPDLIQKAKDGGLDVIQTYVF----WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVW 143 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~v--ilr~GPyi~aEw~~GG~P~W 143 (649)
....++.+.+.|+|++++++- |..-+..+ .++.+|.++|+++||.+ ++-=+||.
T Consensus 143 ~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------ 202 (413)
T PTZ00372 143 VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------ 202 (413)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce------------
Confidence 445788999999999999763 65444443 47899999999998852 44456664
Q ss_pred eccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 006349 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~ 175 (649)
+.+-+.|+.-++...+.+.+-+++-+
T Consensus 203 ------INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ------INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ------ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334456655555455554444444
No 216
>PLN03036 glutamine synthetase; Provisional
Probab=27.33 E-value=1.6e+02 Score=33.34 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=46.9
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc----------hhHHHH--HHHHHHcCcEEEeecCcccccccCC
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----------YDLVRF--IKLVQQAGLYVHLRIGPYVCAEWNY 137 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~----------~dl~~f--l~~a~~~GL~vilr~GPyi~aEw~~ 137 (649)
-++..+.+.++|++.-.+ +||-.||+|.|.=. ..+-++ -++|+++|+.+-.-|=|+. ++|+.
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCC
Confidence 345666889999998887 89999999987621 112122 3568899999999888853 56776
Q ss_pred CCC
Q 006349 138 GGF 140 (649)
Q Consensus 138 GG~ 140 (649)
-|.
T Consensus 306 SGm 308 (432)
T PLN03036 306 AGC 308 (432)
T ss_pred CCc
Confidence 663
No 217
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=27.11 E-value=31 Score=23.13 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=17.1
Q ss_pred hcchhHHHHHHHHHhhccc
Q 006349 13 LGANVKVLMLVLLSFCSWE 31 (649)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (649)
.||..+|++-+|+++.||-
T Consensus 2 IGa~Lkvla~~LP~lISWI 20 (26)
T PF01372_consen 2 IGAILKVLATGLPTLISWI 20 (26)
T ss_dssp HHHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHHHHhcChHHHHHH
Confidence 4889999999999999984
No 218
>PRK04302 triosephosphate isomerase; Provisional
Probab=26.91 E-value=1.3e+02 Score=30.41 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=42.1
Q ss_pred eeCCCCCccc--HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 60 IHYPRSTPEM--WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 60 ~Hy~r~~~~~--W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
.|+....+.. =+.-++.+|++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 5665543222 234589999999999988 333422 2333 5889999999999999998654
No 219
>PLN02231 alanine transaminase
Probab=26.85 E-value=3e+02 Score=31.88 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=43.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
+....+..++.++..+..|+++--+++. |-|.|.=-.++-+ .+.+++++|+++|+++|..
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 3445566666666666667766555555 7788886666655 8999999999999998865
No 220
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=26.79 E-value=3.8e+02 Score=27.21 Aligned_cols=91 Identities=8% Similarity=0.062 Sum_probs=64.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCee
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~-g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~W 143 (649)
..+..++..++.++++|+.++-+|..... ....+..+ |..|=..-+.+|+++|+. + |-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEE
Confidence 35788999999999999999999988765 22223332 678888999999999872 1 33444
Q ss_pred eccCCCeEeecCChhHHHHHHHHHHHHHHHHHhc
Q 006349 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (649)
Q Consensus 144 L~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~ 177 (649)
+.-+.+. .+..+...+..|++.+.+.|...
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 4322221 33347788899999999888843
No 221
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=26.74 E-value=66 Score=33.89 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=42.9
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.-+.+|+.|-++|-.-|.|..-||+ -+-....-|++|...|..++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e---~neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDE---INEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchH---HhHHHHHHHHHHHHHhhhcCCceeEee
Confidence 4578999999999999999999982 222223368899999999999999997
No 222
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=26.57 E-value=2.4e+02 Score=29.55 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=66.2
Q ss_pred EEEEEEEeeCCCCCcc----cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE--Eee
Q 006349 53 RILISGSIHYPRSTPE----MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLR 126 (649)
Q Consensus 53 ~~~~~G~~Hy~r~~~~----~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~v--ilr 126 (649)
.+-+++..|+.+.+.. .=.++|++=.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+ ++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888877664332 223456666689999988832 35544 7889999999997664 444
Q ss_pred cCccc-------ccccCCCCCCeeeccCCCeEee--cCC-hhHHHHHHHHHHHHHHHHH
Q 006349 127 IGPYV-------CAEWNYGGFPVWLKYVPGIEFR--TDN-GPFKAAMHKFTEKIVSMMK 175 (649)
Q Consensus 127 ~GPyi-------~aEw~~GG~P~WL~~~p~~~~R--~~~-~~y~~~~~~~~~~i~~~i~ 175 (649)
+-|-. ..+|..-.+|.|+.+. +. .++ ...+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44421 2236667789998752 11 122 3455566666666666665
No 223
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=26.54 E-value=2.7e+02 Score=31.44 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=46.3
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
+....+..++.++.+++.|.++=-+++. |-|.|.=-.|.=+ .+.+++++|+++++++|..
T Consensus 180 f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 180 FQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 3566777888888888888886555554 6677876566644 7999999999999999855
No 224
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=26.43 E-value=1.1e+02 Score=34.28 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEE-EeecC
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIG 128 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~v-ilr~G 128 (649)
...+.-+..|+.+|+.|+|+|-++++=.---+.+-.|.- -..|-+.+++++.+.|..+ +|.+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 345567889999999999999997654432233333321 2356777888999999985 68875
No 225
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.20 E-value=94 Score=32.28 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=33.0
Q ss_pred EECCEEEEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEE
Q 006349 47 IINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQT 87 (649)
Q Consensus 47 ~idG~p~~~~~G~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~~ 87 (649)
.+.|+++..+.|..|+..- ...+-+--++-||++|+..|-.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 5789999999999997654 4444477899999999998754
No 226
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.69 E-value=56 Score=26.81 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEECCEEEEEEEC
Q 006349 515 VFINGQLSGTVYG 527 (649)
Q Consensus 515 VfVNG~~VGt~~~ 527 (649)
|||||.++|.+..
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999998763
No 227
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=25.67 E-value=5.6e+02 Score=27.84 Aligned_cols=140 Identities=15% Similarity=0.204 Sum_probs=67.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeee
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL 144 (649)
...+...+.-+.+...|+|.|.+ |-....+-.-.=+-...+.++-++.+.+||+|.|-.- ..+--.-||+
T Consensus 54 ~~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL---- 123 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGL---- 123 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-----
T ss_pred cchhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCc----
Confidence 34556788888999999999997 4433333111112234677788888999999986631 0112233553
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCC
Q 006349 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 224 (649)
Q Consensus 145 ~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 224 (649)
-|.| +.-++|.+|+++.++.|-+ ..=.=||=++=.-=|.+.|.+ .|+-...+=..-|++..+-+|--
T Consensus 124 --------~TaD-Pld~~V~~WW~~k~~eIY~--~IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~GG~ 190 (328)
T PF07488_consen 124 --------PTAD-PLDPEVRQWWKDKADEIYS--AIPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHGGI 190 (328)
T ss_dssp --------S----TTSHHHHHHHHHHHHHHHH--H-TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT-E
T ss_pred --------CcCC-CCCHHHHHHHHHHHHHHHH--hCCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccCCE
Confidence 2333 2335667777766666552 222235655555445556644 35544444445567776667744
Q ss_pred cce
Q 006349 225 VPW 227 (649)
Q Consensus 225 vP~ 227 (649)
|-|
T Consensus 191 V~w 193 (328)
T PF07488_consen 191 VIW 193 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 228
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.51 E-value=1.7e+02 Score=30.76 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
.|.+.=++++++..+.|+..|+++++-+. ...+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 45556788999999999999999887654 237889999999999987753
No 229
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.91 E-value=4.3e+02 Score=27.06 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=57.4
Q ss_pred CcEEECCEEEEEEEEEeeCCCC---Cc----------------------ccHHHHHHHHHHCCCCEEEEceeCCC-CCCC
Q 006349 44 KAVIINGQKRILISGSIHYPRS---TP----------------------EMWPDLIQKAKDGGLDVIQTYVFWNG-HEPT 97 (649)
Q Consensus 44 ~~~~idG~p~~~~~G~~Hy~r~---~~----------------------~~W~~~l~k~Ka~G~N~V~~yv~Wn~-hEp~ 97 (649)
.-+.++|.++-+++........ .. +.-.+.++++| .+.+.|-++++|.. .+..
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC
Confidence 4467799999999988764221 00 44567888888 68999999999963 2222
Q ss_pred CCceecccchhHHHHHHHHHHcCcEEEeecCccc
Q 006349 98 QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 98 ~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GPyi 131 (649)
| ..+.+++.+.+-+.|..+|+.=+|-+
T Consensus 201 p-------~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 201 P-------TPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred C-------CHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 2 22567788888889999999877644
No 230
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=24.79 E-value=5.3e+02 Score=28.85 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=46.8
Q ss_pred EEEEEEEeeCCCCCcccH----HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec-
Q 006349 53 RILISGSIHYPRSTPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI- 127 (649)
Q Consensus 53 ~~~~~G~~Hy~r~~~~~W----~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~- 127 (649)
.++++|.+.-...++... .+.++++++.++. +|+...=|.... .+....++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEeccc
Confidence 567888875444444333 3456677877764 444455554322 24456677889999988544
Q ss_pred -----CcccccccCCCCCCeeeccCCC
Q 006349 128 -----GPYVCAEWNYGGFPVWLKYVPG 149 (649)
Q Consensus 128 -----GPyi~aEw~~GG~P~WL~~~p~ 149 (649)
.|... +-..|...+|+.-.|-
T Consensus 110 ~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 110 DDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22111 2234445567665553
No 231
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=24.75 E-value=1e+02 Score=32.03 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~GPyi~a 133 (649)
.-.+.++++|+.|+ -|+. +.+|.+ +.++.|++.|-..| |-+|||..+
T Consensus 111 ~l~~~i~~l~~~gI-~VSL-----FiDP~~------------~qi~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 111 KLCELVKRFHAAGI-EVSL-----FIDADK------------DQISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred HHHHHHHHHHHCCC-EEEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34667788888887 3444 266666 77888888888866 888888754
No 232
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.74 E-value=1.4e+02 Score=29.45 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCEEE-----EceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 73 LIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~-----~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
....+++.|+.+|- |-|+|.--+.+| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35689999999986 678999999998 8999999999999998754
No 233
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.49 E-value=39 Score=37.38 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCcEE-EeecCcccccccCCCCC--Ceeecc
Q 006349 110 VRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGF--PVWLKY 146 (649)
Q Consensus 110 ~~fl~~a~~~GL~v-ilr~GPyi~aEw~~GG~--P~WL~~ 146 (649)
+++++.|.+.||.| |.||| ||-|...+|-+ ++|+.+
T Consensus 176 E~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 176 EKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 56789999999996 79997 67776666654 666653
No 234
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.43 E-value=1.2e+02 Score=31.55 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCc-ee--cc-cchhHHHHHHHHHHcCcEEEeec
Q 006349 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YY--FQ-DRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~-yd--f~-g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
..++.++.++++|+++|.+. . .+...+. .+ +. -...|.++.+.|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~---~-~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLA---G-YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEec---C-cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 46788999999999999762 1 1111110 00 10 11467788899999999999985
No 235
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.41 E-value=86 Score=33.12 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
.--..+.+-.+|.++|.++|+|.-. +.-+-..+|.+..+.|++.||-++.
T Consensus 96 l~~sVeeAvrlGAdAV~~~v~~Gs~------~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 96 VAVDMEDAVRLNACAVAAQVFIGSE------YEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCH------HHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3334677889999999999999721 1122334899999999999999886
No 236
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=24.18 E-value=55 Score=35.20 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.3
Q ss_pred EEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEE-eec
Q 006349 52 KRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (649)
Q Consensus 52 p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vi-lr~ 127 (649)
..++++-+..--+.| +.|++.+..+-+.|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 344555555544444 78999999999999999997 787544 67799999999999877 664
No 237
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=24.05 E-value=1e+02 Score=33.93 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.++.+-++|..+|.+.|+|.- .+...-..+|.+..+.|++.||-++++.
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 366788999999999999982 2223344589999999999999999864
No 238
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.87 E-value=81 Score=32.71 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC---CCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~---~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
+..++.++.++++|+.+|.+ |..+.+. +..+. .-...+.++.++|+++|+.+.+.+-+
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLK-RVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHH-HHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 45788899999999998765 3333321 11111 01246778888888999999998743
No 239
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=23.79 E-value=84 Score=34.95 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=69.4
Q ss_pred HHHHHHHhhcccccccceeEEEecCcEEECCEEEEEEEEEeeCCC-CCcccHHHHHHHHHHC-CCCEEEEceeCCCCCCC
Q 006349 20 LMLVLLSFCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPR-STPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPT 97 (649)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~idG~p~~~~~G~~Hy~r-~~~~~W~~~l~k~Ka~-G~N~V~~yv~Wn~hEp~ 97 (649)
+.+++.+|+ .....|-.=+-+|-+.-.+-...+=|+.|+- .|.+.|+-+|.-+.++ -=||+..-| =|=+.|-
T Consensus 139 Ie~~i~~LA-----~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPc 212 (447)
T KOG0259|consen 139 IELAISSLA-----NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPC 212 (447)
T ss_pred HHHHHHHhc-----CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCC
Confidence 444555544 3445555555555555444444555665554 5888999999999886 678888744 3777888
Q ss_pred CCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 98 QGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 98 ~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
=++|... .|.+++++|+++|+.||..
T Consensus 213 GnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 213 GNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred cccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 8888877 8999999999999999865
No 240
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.67 E-value=1e+02 Score=33.42 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=62.9
Q ss_pred hhcccccccceeEEEec-CcEE----ECCEEEEEEEEEee------CCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC
Q 006349 27 FCSWEISFVKASVSYDH-KAVI----INGQKRILISGSIH------YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE 95 (649)
Q Consensus 27 ~~~~~~~~~~~~v~~d~-~~~~----idG~p~~~~~G~~H------y~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE 95 (649)
+.+-++.+-+..|-.|. .++- ++-.-=+|++-|=+ .-|.|...=.-..+++|++|-++|-+-+.|+--|
T Consensus 53 lvs~~Ltp~ASaILlDpeyglpa~~~~~~~~GLllayEktGyD~~~~gRl~~ll~~wS~~rike~GadavK~Llyy~pD~ 132 (324)
T PRK12399 53 LVSEELTPYASSILLDPEYGLPASKARDEDAGLLLAYEKTGYDATTTGRLPDCLDDWSAKRIKEEGADAVKFLLYYDVDE 132 (324)
T ss_pred HHHHHhccccceeeeccccCchhhcccCcCCceEEEehhhCCccCCCCCcccccchhhHHHHHHhCCCeEEEEEEECCCC
Confidence 33445555555555554 2221 11122355554433 2345544444467899999999999999999888
Q ss_pred CCCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 96 p~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+.+- +=.-...++++-+.|++++|..+|.|
T Consensus 133 ~~~i--n~~k~a~vervg~eC~a~dipf~lE~ 162 (324)
T PRK12399 133 PDEI--NEQKKAYIERIGSECVAEDIPFFLEI 162 (324)
T ss_pred CHHH--HHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 7631 11122368899999999999999987
No 241
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.59 E-value=1.4e+02 Score=35.30 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=45.3
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEe
Q 006349 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vil 125 (649)
+-|.|.|.+.-+..++++++.|+..|++..+.|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 45777788888999999999999999998766653 3788999999999998643
No 242
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=23.48 E-value=1.3e+02 Score=33.17 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=42.9
Q ss_pred CCEEEEEEEEEeeC---------------------CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccch
Q 006349 49 NGQKRILISGSIHY---------------------PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY 107 (649)
Q Consensus 49 dG~p~~~~~G~~Hy---------------------~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~ 107 (649)
.+++.++.|.+-|| .|+..+.-++.|++.++.|..-+- |.=+.-...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~--vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFA--VVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEE--EEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccccee--eeccCCCccccccc-----
Confidence 45677777777887 334445566677777888764321 11133444455555
Q ss_pred hHHHHHHHHHHcCcEEEee
Q 006349 108 DLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 108 dl~~fl~~a~~~GL~vilr 126 (649)
||.++.++|+++++++.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 8889999999988888776
No 243
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.26 E-value=1.7e+02 Score=29.81 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=37.5
Q ss_pred EeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 59 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
++|--=..|+. .++.+.++|.+.|.+ |-|..+ ++.++|+.++++|+++-+-..
T Consensus 62 dvHLMv~~p~~---~i~~~~~~gad~i~~-----H~Ea~~---------~~~~~l~~ik~~g~k~Glaln 114 (220)
T PRK08883 62 DVHLMVKPVDR---IIPDFAKAGASMITF-----HVEASE---------HVDRTLQLIKEHGCQAGVVLN 114 (220)
T ss_pred EEEeccCCHHH---HHHHHHHhCCCEEEE-----cccCcc---------cHHHHHHHHHHcCCcEEEEeC
Confidence 45543334444 567788899999998 445433 688999999999998655543
No 244
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=22.63 E-value=1.5e+02 Score=35.52 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=66.2
Q ss_pred ehhhhcchhHHHHHHHHHhhcccccccc---eeEEEecCcEEECCEEEEEEEEEe------eCCCCCcccHHHHHHHHHH
Q 006349 9 KWKMLGANVKVLMLVLLSFCSWEISFVK---ASVSYDHKAVIINGQKRILISGSI------HYPRSTPEMWPDLIQKAKD 79 (649)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~d~~~~~idG~p~~~~~G~~------Hy~r~~~~~W~~~l~k~Ka 79 (649)
.|-|+-+-|.+++++..|.|+......+ ....--.+..--++-+++.+..-. .+..++++.-++.|+-+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~ 83 (672)
T PRK14581 4 LLIFIKSLIVGMMIVSTMGCAEKPTFVPPAQRALPQSERPWQKNTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRD 83 (672)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccccccCcccccccccccccCCCceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHH
Confidence 4777777788888877777763222211 111000011112333333222110 1123467788999999999
Q ss_pred CCCCEEEEceeC---CCCCCCCCc---eecc-c-chhHHHHHHHHHHcCcEEEe
Q 006349 80 GGLDVIQTYVFW---NGHEPTQGN---YYFQ-D-RYDLVRFIKLVQQAGLYVHL 125 (649)
Q Consensus 80 ~G~N~V~~yv~W---n~hEp~~G~---ydf~-g-~~dl~~fl~~a~~~GL~vil 125 (649)
.|+++|+.=-.. ....+-|++ .-|+ | .......+.+.+++|+...+
T Consensus 84 nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~sny~~AlPILKkyg~pATf 137 (672)
T PRK14581 84 NGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYSSFYRRVYPLLKAYKWSAVL 137 (672)
T ss_pred CcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCcchHHHHHHHHHHcCCCEEE
Confidence 999999974332 222333443 2354 2 34678889999999999643
No 245
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.54 E-value=1.6e+02 Score=30.92 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecCc
Q 006349 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (649)
Q Consensus 70 W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~GP 129 (649)
-++-+++++++|++.|-+ .-+|-+ ...+|++.|+++||..|+-..|
T Consensus 108 ~e~F~~~~~~aGvdgvii-----pDLP~e---------e~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 108 INKFIKKISQAGVKGLII-----PDLPYE---------ESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHHcCCeEEEe-----cCCCHH---------HHHHHHHHHHHcCCCEEEEECC
Confidence 367799999999999998 223322 5779999999999998766544
No 246
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=22.23 E-value=98 Score=37.04 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCEEEEc--------e-eCCCCCC---C-CCceecc----cchhHHHHHHHHHHcCcEEEeec
Q 006349 71 PDLIQKAKDGGLDVIQTY--------V-FWNGHEP---T-QGNYYFQ----DRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~y--------v-~Wn~hEp---~-~G~ydf~----g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
+++|..+|.+|+|+|+.- + .|.++-- . -++|--. -..++.++++.|++.||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 445888999999999952 2 3444321 0 0111100 02489999999999999999985
No 247
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.15 E-value=3.2e+02 Score=25.74 Aligned_cols=89 Identities=12% Similarity=0.221 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc---cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~---g~~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~ 142 (649)
.+.+....++.++++|+..+-+|.....+. ..|... |..|=..-+..|+++|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET---SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc---cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 467889999999999999999988762221 222222 667888999999999983 1 3344
Q ss_pred eeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 006349 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (649)
Q Consensus 143 WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~ 176 (649)
++--+ .-..+..+.+.+..|++.+.+.|..
T Consensus 98 YfavD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE------TS-B-HH-------HHHHHHHHHGG
T ss_pred EEEee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 44322 1225667778888899988888874
No 248
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=22.12 E-value=1.4e+02 Score=30.89 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecc-----cch-----hHHH-H-HHHHHHcCcEEEeecCccc
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-----DRY-----DLVR-F-IKLVQQAGLYVHLRIGPYV 131 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~-----g~~-----dl~~-f-l~~a~~~GL~vilr~GPyi 131 (649)
.+..++.++.+.++|+++-.. +||-.||+|.+. +.. -+-+ . =++|+++||.+-+-|=|+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 455788999999999988887 899999999764 211 1111 1 2567899999999988865
No 249
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=22.09 E-value=3.7e+02 Score=28.68 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccccCCc
Q 006349 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGP 186 (649)
Q Consensus 107 ~dl~~fl~~a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGp 186 (649)
..+.+.|+.|++.|++|+|-+|- |. |.. . ..++ +..+++.+.|.+.++++.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~~----------~--~~~~---~~~~~fa~sl~~~~~~~g~------- 111 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GHV----------D--LNHT---AQEDNFVDSIVAIIKEYGF------- 111 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Ccc----------c--cCCH---HHHHHHHHHHHHHHHHhCC-------
Confidence 35788899999999999999862 11 110 0 1122 3456788888888886543
Q ss_pred eEEeccccccCCccccCCCChHHHHHHHHHHHhhcC
Q 006349 187 IILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (649)
Q Consensus 187 II~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 222 (649)
=++.|+=|++............|.+.|+++-...+
T Consensus 112 -DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 -DGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred -CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 36788888864211000122456676666655544
No 250
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.09 E-value=2e+02 Score=28.41 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee
Q 006349 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 73 ~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr 126 (649)
.++++.++|.+.|.+.... + ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~------~-------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA------D-------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccC------C-------HHHHHHHHHHHHHcCCEEEEE
Confidence 6889999999999984332 1 136789999999999999876
No 251
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=22.05 E-value=1e+03 Score=25.84 Aligned_cols=128 Identities=21% Similarity=0.326 Sum_probs=75.3
Q ss_pred CcccHHHHHHHHHHCC-CCEEEEceeCCCCCCC-CCceecc-cchhHHHHHHHHHHc-CcEEEeecCcccccccCCCCCC
Q 006349 66 TPEMWPDLIQKAKDGG-LDVIQTYVFWNGHEPT-QGNYYFQ-DRYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFP 141 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G-~N~V~~yv~Wn~hEp~-~G~ydf~-g~~dl~~fl~~a~~~-GL~vilr~GPyi~aEw~~GG~P 141 (649)
..+.|.|.++++...+ ...|+. |.--|. ||-=++. ...-++++++.+++. .+-|++-..|.+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~iel----NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~---------- 172 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIEL----NISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNI---------- 172 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----EccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCH----------
Confidence 4677999999999999 899998 766653 5533333 223566677666553 344566655511
Q ss_pred eeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccc---cccc--C-Cc-eEEec----cccccCCccccCCCC-hHH
Q 006349 142 VWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKL---FQTQ--G-GP-IILSQ----IENEFGPVEWDIGAP-GKA 209 (649)
Q Consensus 142 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~i~~~i~~~~~---~~~~--g-Gp-II~~Q----IENEyg~~~~~~~~~-~~~ 209 (649)
.. +..+++.+.+++. ...| . ++ |..-+ ..||.|.++ |.+ -..
T Consensus 173 -------------------~d----i~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~ 226 (310)
T COG0167 173 -------------------TD----IDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPI 226 (310)
T ss_pred -------------------HH----HHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHH
Confidence 11 1222333332221 1111 0 22 22222 568898764 332 234
Q ss_pred HHHHHHHHHhhcCCCcceEEecCC
Q 006349 210 YAKWAAQMAVGLNTGVPWVMCKQD 233 (649)
Q Consensus 210 y~~~l~~~~~~~g~~vP~~~~~~~ 233 (649)
=++++++++++.+.++|++-+.+-
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCc
Confidence 578899999999999999986654
No 252
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.04 E-value=3.4e+02 Score=29.21 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=78.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--CCCC---CCC------------------------CCceecccchhHHHHHHHH
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EPT------------------------QGNYYFQDRYDLVRFIKLV 116 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~--Wn~h---Ep~------------------------~G~ydf~g~~dl~~fl~~a 116 (649)
+.+..++.|+.|...++|++..++- |.+- .|. .|.|- ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7888999999999999999998654 3221 111 12222 35999999999
Q ss_pred HHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeec---------CChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 006349 117 QQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRT---------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (649)
Q Consensus 117 ~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~---------~~~~y~~~~~~~~~~i~~~i~~~~~~~~~gGpI 187 (649)
++.|+-||-.+----+++ +|+...|+...+. -|+ -.+++-++++.|+..+. +++- ..++.
T Consensus 92 ~~rgI~vIPEID~PGH~~-------a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~--~~f~-~~~~~ 160 (326)
T cd06564 92 KDRGVNIIPEIDSPGHSL-------AFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYL--DGFN-PKSDT 160 (326)
T ss_pred HHcCCeEeccCCCcHHHH-------HHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHH--HhcC-CCCCE
Confidence 999999996642111222 2332222221110 111 12455566666666666 4431 11232
Q ss_pred EEecc-ccccCCccccCCCChHHHHHHHHHHHhhcCCCc
Q 006349 188 ILSQI-ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (649)
Q Consensus 188 I~~QI-ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (649)
| +| .-|+-... ...+.-..|++.+.+.+++.|..+
T Consensus 161 ~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 161 V--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred E--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCeE
Confidence 2 33 12332100 001112467888888888887664
No 253
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.54 E-value=1.9e+02 Score=31.09 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEce----eCCCCC---CC---CCcee-cccchhHHHHHHHHHHcCcEEEeec
Q 006349 65 STPEMWPDLIQKAKDGGLDVIQTYV----FWNGHE---PT---QGNYY-FQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~~yv----~Wn~hE---p~---~G~yd-f~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
.+.+...+.|+.|...++|+...++ -|.+-- |+ .|.+. |=-..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 4688899999999999999999987 374421 11 22111 1113599999999999999999764
No 254
>PLN02284 glutamine synthetase
Probab=21.52 E-value=2.6e+02 Score=30.69 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=41.9
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCceecccc-----h------hHHHHHH-HHHHcCcEEEeecCcccccccCCCC
Q 006349 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-----Y------DLVRFIK-LVQQAGLYVHLRIGPYVCAEWNYGG 139 (649)
Q Consensus 74 l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~-----~------dl~~fl~-~a~~~GL~vilr~GPyi~aEw~~GG 139 (649)
.+.+.++|+++-.+ +||-.||+|.+.-. . -+..+++ +|+++|+.+-.-|=|+. ++|+.-|
T Consensus 176 ~~~l~~~Gi~ve~~-----h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~-~~~~GSG 247 (354)
T PLN02284 176 YKACLYAGINISGI-----NGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP-GDWNGAG 247 (354)
T ss_pred HHHHHHCCCCeEEE-----EcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC-CCCccCc
Confidence 34449999998887 99999999876411 1 1123333 78999999999988853 4555444
No 255
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.19 E-value=1.3e+02 Score=32.86 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccc----hhHHHHHHHHHHcCcE
Q 006349 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----YDLVRFIKLVQQAGLY 122 (649)
Q Consensus 71 ~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~----~dl~~fl~~a~~~GL~ 122 (649)
++.|+.||++|+|.|++. .-.-.+...+.-|+ .++.+.++.+++.|+.
T Consensus 100 ~e~l~~l~~~Gv~risiG----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEEe----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 578999999999999993 33333333333332 3788889999999985
No 256
>PRK01060 endonuclease IV; Provisional
Probab=21.13 E-value=4.8e+02 Score=26.81 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=37.9
Q ss_pred CcccHHHHHHHHHHCCCCE----EEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcE-EEeecC
Q 006349 66 TPEMWPDLIQKAKDGGLDV----IQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY-VHLRIG 128 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~----V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~-vilr~G 128 (649)
.++.-+..-+.+++.|+.. +......|.-.|.|...+.+ ...+.+.+++|++.|-. |++.+|
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4444444445667889873 22222245655655444433 34688999999999997 556665
No 257
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=21.07 E-value=2.7e+02 Score=24.80 Aligned_cols=74 Identities=24% Similarity=0.261 Sum_probs=42.6
Q ss_pred ccEEEEEEEeecCCCcccccCCCCceEEEcccc--cEEEEEECC---EEEEEEECc--cCCCee-EEecceecCCCccEE
Q 006349 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAG--HALQVFING---QLSGTVYGS--LENPKL-TFSKNVKLRPGVNKI 549 (649)
Q Consensus 478 ~GyvWYrt~v~l~~~~~~~~~~~~~~L~l~~~~--D~~~VfVNG---~~VGt~~~~--~~~~~~-~~~~~i~Lk~G~N~L 549 (649)
-+++=|.. |+++.... ...++++.+.. -...++||| +.+++..-. ..-..+ ++..++.|++|.|+|
T Consensus 31 G~~~~~~~-Vd~~~~g~-----y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i 104 (125)
T PF03422_consen 31 GDWIEYNN-VDVPEAGT-----YTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTI 104 (125)
T ss_dssp TTEEEEEE-EEESSSEE-----EEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEE
T ss_pred CCEEEEEE-EeeCCCce-----EEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEE
Confidence 35566653 66654431 12345555543 378999999 888876531 111121 233356788899988
Q ss_pred EEEEeecC
Q 006349 550 SLLSTSVG 557 (649)
Q Consensus 550 ~ILven~G 557 (649)
.|....-+
T Consensus 105 ~l~~~~~~ 112 (125)
T PF03422_consen 105 YLVFNGGD 112 (125)
T ss_dssp EEEESSSS
T ss_pred EEEEECCC
Confidence 87776543
No 258
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.82 E-value=1.4e+02 Score=31.94 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCCcee------cccchhHHHHHHHHHHcCcEEEee
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYY------FQDRYDLVRFIKLVQQAGLYVHLR 126 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hEp------~~G~yd------f~g~~dl~~fl~~a~~~GL~vilr 126 (649)
+.+.-.+.|..|...++|++..++- |.+--+ ..|.+. +=-..|+.++++.|++.||.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 6778899999999999999999875 433221 122221 111359999999999999999966
No 259
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.81 E-value=3e+02 Score=21.87 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC--ceecccchhHHHHHHHHHHcCcEEE
Q 006349 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVH 124 (649)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G--~ydf~g~~dl~~fl~~a~~~GL~vi 124 (649)
|..-.+.++.+.+.|+|..+++.. ...++... .+..++ .+.+++++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~-~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVY-PSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEe-ccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 345677888999999999999754 11112222 344444 456799999999997654
No 260
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.67 E-value=2.4e+02 Score=31.21 Aligned_cols=65 Identities=11% Similarity=0.257 Sum_probs=47.9
Q ss_pred EEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEeecC
Q 006349 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (649)
Q Consensus 51 ~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~G 128 (649)
++.+++.|.. . .....+++..+.+++.|+.++.. +..+|.| .++ ++++.++++++.+..+|+-.|
T Consensus 32 ~~~livt~~~--~-~~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNM--L-TKLGMAGDVQKALEERNIFSVIY----DGTQPNP---TTE---NVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcc--h-hhCccHHHHHHHHHHcCCeEEEe----CCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 7888887741 1 12356788888899999874333 5666766 223 788999999999999999986
No 261
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.65 E-value=2.2e+02 Score=32.34 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=51.4
Q ss_pred ecCcEEECCEEEEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcee----CCCCC---C------------------
Q 006349 42 DHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE---P------------------ 96 (649)
Q Consensus 42 d~~~~~idG~p~~~~~G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~----Wn~hE---p------------------ 96 (649)
.-|+|+||=-| |+ .+.+.-.+.|..|-...+|+...++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f--~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NF--HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CC--CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566666433 33 37888999999999999999999873 53211 0
Q ss_pred --------------CCCceecccchhHHHHHHHHHHcCcEEEeec
Q 006349 97 --------------TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (649)
Q Consensus 97 --------------~~G~ydf~g~~dl~~fl~~a~~~GL~vilr~ 127 (649)
..|.|. ..|+.++++.|++.|+.||-.+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 011222 3599999999999999999663
No 262
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=20.54 E-value=4.2e+02 Score=24.20 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=28.3
Q ss_pred cccccEEEEEECCEEEEEEECccCCCeeEEecceecCCCccEEEEEEeec
Q 006349 507 WSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (649)
Q Consensus 507 ~~~~D~~~VfVNG~~VGt~~~~~~~~~~~~~~~i~Lk~G~N~L~ILven~ 556 (649)
|+.+|.++|++||+.|-+..-......-+|+. -+.|....+|.+.|-
T Consensus 45 G~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v---~kgG~y~m~V~lCn~ 91 (106)
T cd02848 45 GDPGDTYKVLLDGKEVWSGALTGSSGTATFKV---GKGGRYQMQVALCNG 91 (106)
T ss_pred CCCCcEEEEEECCeEEEcccCCCCccEEEEEe---CCCCeEEEEEEEECC
Confidence 78999999999999886544221111222321 245666777755443
No 263
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=20.45 E-value=2.3e+02 Score=27.76 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHHHcCcEEEee-cCc
Q 006349 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR-IGP 129 (649)
Q Consensus 72 ~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~~~GL~vilr-~GP 129 (649)
..++.++++|.+.|.+ +.|+.+ ..+.++++.|+++|+.+++- ++|
T Consensus 68 ~~~~~~~~aGad~i~~-----h~~~~~--------~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 68 LEAEMAFKAGADIVTV-----LGAAPL--------STIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHHhcCCCEEEE-----EeeCCH--------HHHHHHHHHHHHcCCeEEEEEeCC
Confidence 3568899999999998 233321 25789999999999998875 665
No 264
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.34 E-value=2.6e+02 Score=30.05 Aligned_cols=68 Identities=22% Similarity=0.464 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee-CCC-CCCCCCc-----eecccc--hhHHHHHHHHHHcCcEEEeecCccccc
Q 006349 66 TPEMWPDLIQKAKDGGLDVIQTYVF-WNG-HEPTQGN-----YYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (649)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~~yv~-Wn~-hEp~~G~-----ydf~g~--~dl~~fl~~a~~~GL~vilr~GPyi~a 133 (649)
+.+.-++.++++++.||-+=.+++= |.. ++..-|. |.|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6667799999999999887666553 532 2332232 333322 389999999999999999998787753
No 265
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.23 E-value=2.5e+02 Score=25.47 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=42.4
Q ss_pred EEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC---CCCCceecccchhHHHHHHHHHHc-CcEEEee
Q 006349 58 GSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE---PTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLR 126 (649)
Q Consensus 58 G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hE---p~~G~ydf~g~~dl~~fl~~a~~~-GL~vilr 126 (649)
|=++=-=-|.+.+..++++|+..|+++|..-.-=-... +=| +++++.++.++. |+.||.-
T Consensus 42 gf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP---------~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 42 GFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP---------HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred EEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC---------CHHHHHHHHHHHhCCCEeee
Confidence 33343334688899999999999999998743322222 334 578899998888 9988863
No 266
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=20.01 E-value=3.6e+02 Score=28.15 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=45.5
Q ss_pred EEEEEEEEEeeCCCCC-------------cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCceecccchhHHHHHHHHH
Q 006349 51 QKRILISGSIHYPRST-------------PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (649)
Q Consensus 51 ~p~~~~~G~~Hy~r~~-------------~~~W~~~l~k~Ka~G~N~V~~yv~Wn~hEp~~G~ydf~g~~dl~~fl~~a~ 117 (649)
-++.++...+-|.+.. .++.++.++++++.|+|.|=+ -|+.+ +..++++.
T Consensus 87 ~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I~---------------~~a~~~l~ 149 (261)
T cd03334 87 PRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSVS---------------RIAQDLLL 149 (261)
T ss_pred CcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCccC---------------HHHHHHHH
Confidence 3678888999888743 455677899999999999865 23222 25578888
Q ss_pred HcCcEEEeecC
Q 006349 118 QAGLYVHLRIG 128 (649)
Q Consensus 118 ~~GL~vilr~G 128 (649)
++|+.++-|+.
T Consensus 150 k~gI~~v~~v~ 160 (261)
T cd03334 150 EAGITLVLNVK 160 (261)
T ss_pred HCCCEEEEecC
Confidence 99999988863
Done!