BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006350
         (649 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana
           GN=At5g41620 PE=1 SV=2
          Length = 623

 Score =  145 bits (366), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 171/322 (53%), Gaps = 38/322 (11%)

Query: 126 QILSDPSYSPFSEKMDRSRRNI--IARRKRTSMGSQSHELQ-VSDCNVGA-----MDSNL 177
           Q L DPS     +     RR I  +  +   S+   +H LQ VS  + G+       +  
Sbjct: 113 QFLRDPSPDHQPDSAGSLRRQIGQMLIKHHQSIDRNNHALQPVSPASYGSSLEVTTYNKA 172

Query: 178 ISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSG 237
           ++   ++E     SR  H+N                L  S ELLKVLNRIW +EEQH S 
Sbjct: 173 VTPSSSLEFRGRPSREPHYN----------------LKTSTELLKVLNRIWSLEEQHVSN 216

Query: 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISC 297
           I+LI A++ EV  +RV++ +L++ Q  +  E++ ++K  AEEK   + KE ER+  A+  
Sbjct: 217 ISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQS 276

Query: 298 IAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARG 357
           + + LE E+KL++++E L++K+ +EL+E K+ LSN +KELE   ++  +ME +CDE A+G
Sbjct: 277 VRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKG 336

Query: 358 IGEDRAEFEELKRESAKVKEEMEK--------EREMLQLADVLREERVQMKLSEAKYHFE 409
           I     E   LK      K+ ++K        ++ +L +A+   +ER+QM+L        
Sbjct: 337 IKSYEEEIHGLK------KKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRLEGGDTLNG 390

Query: 410 EKNAAVERLRNELEAYLGTKKG 431
           +  + +++L  E+E +L  K+ 
Sbjct: 391 KNRSVLDKLEVEIETFLQEKRN 412


>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
            (isolate 3D7) GN=PF13_0198 PE=3 SV=1
          Length = 3130

 Score = 36.2 bits (82), Expect = 0.94,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 39/179 (21%)

Query: 264  LNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQ-TERLNKKLGKE 322
            L   E E L K    ++    R ERE+         E+L+ E++LKRQ  ERL K+    
Sbjct: 2739 LKRQEQERLQKEEELKRQEQERLEREK--------QEQLQKEEELKRQEQERLQKE---- 2786

Query: 323  LAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK- 381
                      A+K  E E+  K+      +EL R   +++   E  K+E  + +EE+++ 
Sbjct: 2787 ---------EALKRQEQERLQKE------EELKR---QEQERLEREKQEQLQKEEELKRQ 2828

Query: 382  EREMLQLADVLR---EERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKKGKENGDM 437
            E+E LQ  + L+   +ER+Q K  E K   +E+   +ER + EL       K K   DM
Sbjct: 2829 EQERLQKEEALKRQEQERLQ-KEEELKRQEQER---LERKKIELAEREQHIKSKLESDM 2883



 Score = 34.7 bits (78), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 25/151 (16%)

Query: 282  AWRRKERERIREAISCIAEELEVEKKLKRQ-TERLNKKLGKELAETKACLSNAMKELESE 340
            A +R+E+ER           L+ E++LKRQ  ERL ++  ++L + +      +K  E E
Sbjct: 2738 ALKRQEQER-----------LQKEEELKRQEQERLEREKQEQLQKEEE-----LKRQEQE 2781

Query: 341  KRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMK 400
            +  K+      + L R   E   + EELKR+  + + E EK+ ++ +  ++ R+E+ +++
Sbjct: 2782 RLQKE------EALKRQEQERLQKEEELKRQEQE-RLEREKQEQLQKEEELKRQEQERLQ 2834

Query: 401  LSEA-KYHFEEKNAAVERLRNELEAYLGTKK 430
              EA K   +E+    E L+ + +  L  KK
Sbjct: 2835 KEEALKRQEQERLQKEEELKRQEQERLERKK 2865


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,524,812
Number of Sequences: 539616
Number of extensions: 10370913
Number of successful extensions: 56917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 2450
Number of HSP's that attempted gapping in prelim test: 47782
Number of HSP's gapped (non-prelim): 7646
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)