Query 006350
Match_columns 649
No_of_seqs 97 out of 110
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 22:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 97.6 0.014 3.1E-07 67.5 23.9 73 231-315 452-524 (697)
2 PF07888 CALCOCO1: Calcium bin 97.2 0.14 2.9E-06 58.3 24.9 118 312-430 302-441 (546)
3 KOG0971 Microtubule-associated 97.1 0.42 9E-06 57.2 28.3 175 201-375 227-443 (1243)
4 KOG0161 Myosin class II heavy 97.1 0.11 2.3E-06 66.2 24.4 130 241-370 966-1118(1930)
5 KOG0977 Nuclear envelope prote 97.0 0.075 1.6E-06 60.3 21.1 187 241-428 115-335 (546)
6 PF09726 Macoilin: Transmembra 96.6 0.39 8.4E-06 56.1 22.6 74 241-314 427-509 (697)
7 TIGR02169 SMC_prok_A chromosom 96.5 0.84 1.8E-05 53.7 25.2 15 29-43 30-44 (1164)
8 PF00038 Filament: Intermediat 96.5 0.57 1.2E-05 48.0 21.0 116 225-340 32-150 (312)
9 PF00038 Filament: Intermediat 96.5 0.71 1.5E-05 47.4 21.6 202 218-429 57-285 (312)
10 TIGR00606 rad50 rad50. This fa 96.4 0.28 6.1E-06 60.2 21.6 127 295-429 838-967 (1311)
11 KOG0612 Rho-associated, coiled 96.4 0.71 1.5E-05 56.6 23.9 137 220-359 443-581 (1317)
12 TIGR02169 SMC_prok_A chromosom 96.3 1.6 3.4E-05 51.5 25.9 17 244-260 292-308 (1164)
13 KOG0996 Structural maintenance 96.3 0.76 1.6E-05 56.2 23.3 130 252-381 333-465 (1293)
14 PF07888 CALCOCO1: Calcium bin 96.1 2.4 5.3E-05 48.6 25.2 43 218-263 153-195 (546)
15 KOG0933 Structural maintenance 95.8 1.3 2.8E-05 53.7 21.9 162 239-430 741-902 (1174)
16 PRK02224 chromosome segregatio 95.6 3.8 8.3E-05 47.9 24.4 67 312-378 354-427 (880)
17 KOG0977 Nuclear envelope prote 95.4 4.4 9.5E-05 46.6 23.4 179 245-424 91-300 (546)
18 COG1196 Smc Chromosome segrega 95.3 6.5 0.00014 48.3 25.9 59 219-277 668-726 (1163)
19 COG1196 Smc Chromosome segrega 95.1 5.5 0.00012 48.9 24.7 34 389-422 463-497 (1163)
20 PRK02224 chromosome segregatio 95.1 4.3 9.4E-05 47.5 23.0 32 241-272 208-239 (880)
21 PHA02562 46 endonuclease subun 95.0 2.9 6.4E-05 46.0 20.3 39 323-361 257-297 (562)
22 KOG0161 Myosin class II heavy 94.9 6.8 0.00015 50.8 25.1 87 240-326 1246-1334(1930)
23 PF05701 WEMBL: Weak chloropla 94.7 9.2 0.0002 43.3 23.6 132 287-429 303-444 (522)
24 PRK03918 chromosome segregatio 94.7 11 0.00024 44.0 25.2 19 214-232 141-159 (880)
25 PRK11637 AmiB activator; Provi 94.3 6 0.00013 43.1 20.2 36 241-276 77-112 (428)
26 KOG0163 Myosin class VI heavy 94.2 2.8 6E-05 50.0 18.2 100 207-309 839-940 (1259)
27 PRK09039 hypothetical protein; 94.1 3.4 7.4E-05 44.4 17.7 140 241-428 48-187 (343)
28 PF09727 CortBP2: Cortactin-bi 94.1 2.2 4.8E-05 43.2 15.2 152 217-383 12-175 (192)
29 PF12128 DUF3584: Protein of u 93.4 19 0.00041 44.7 24.3 63 231-293 627-689 (1201)
30 PF05701 WEMBL: Weak chloropla 93.3 8.8 0.00019 43.4 20.0 139 239-380 281-424 (522)
31 KOG0933 Structural maintenance 93.3 19 0.00041 44.4 23.2 138 241-378 686-851 (1174)
32 KOG0964 Structural maintenance 93.2 12 0.00026 45.9 21.4 111 223-337 235-351 (1200)
33 PF09731 Mitofilin: Mitochondr 93.1 18 0.0004 40.8 22.5 56 207-262 215-274 (582)
34 KOG0971 Microtubule-associated 92.9 30 0.00064 42.5 30.0 90 280-380 267-356 (1243)
35 PF07798 DUF1640: Protein of u 92.5 11 0.00024 36.7 18.5 66 307-374 84-156 (177)
36 KOG0976 Rho/Rac1-interacting s 92.4 19 0.00041 43.6 21.3 122 251-373 250-385 (1265)
37 PF10174 Cast: RIM-binding pro 92.4 9.7 0.00021 45.6 19.3 38 390-427 276-315 (775)
38 PF06705 SF-assemblin: SF-asse 92.2 15 0.00032 37.4 20.6 70 285-356 91-161 (247)
39 KOG0612 Rho-associated, coiled 92.2 11 0.00025 46.9 19.7 40 285-324 542-581 (1317)
40 KOG0963 Transcription factor/C 92.1 4.2 9.2E-05 47.2 15.5 123 234-387 230-357 (629)
41 TIGR00606 rad50 rad50. This fa 91.8 43 0.00093 42.0 24.8 60 242-302 891-950 (1311)
42 KOG4593 Mitotic checkpoint pro 91.7 17 0.00037 43.1 19.8 205 207-427 348-573 (716)
43 KOG0994 Extracellular matrix g 91.6 22 0.00047 44.6 21.0 32 344-375 1607-1638(1758)
44 KOG1029 Endocytic adaptor prot 91.5 18 0.00039 43.6 19.7 49 323-371 460-508 (1118)
45 PHA02562 46 endonuclease subun 91.2 28 0.0006 38.6 25.6 32 241-272 215-246 (562)
46 PF05615 THOC7: Tho complex su 91.2 6.4 0.00014 36.7 13.2 54 218-271 19-78 (139)
47 KOG0976 Rho/Rac1-interacting s 91.0 41 0.00088 41.0 21.9 79 310-388 273-365 (1265)
48 PF12718 Tropomyosin_1: Tropom 90.9 15 0.00034 35.1 18.6 93 241-338 2-104 (143)
49 PF12128 DUF3584: Protein of u 90.6 54 0.0012 40.8 25.6 65 242-306 631-698 (1201)
50 KOG0994 Extracellular matrix g 90.5 59 0.0013 41.2 23.7 94 327-428 1653-1746(1758)
51 KOG0996 Structural maintenance 90.2 29 0.00063 43.5 20.5 60 320-379 506-565 (1293)
52 TIGR01843 type_I_hlyD type I s 89.7 29 0.00063 36.4 20.4 25 400-424 247-271 (423)
53 KOG0250 DNA repair protein RAD 88.9 16 0.00034 45.2 17.0 161 218-394 319-486 (1074)
54 KOG0239 Kinesin (KAR3 subfamil 88.9 19 0.0004 42.6 17.3 137 286-428 175-315 (670)
55 PF10186 Atg14: UV radiation r 88.4 30 0.00064 34.8 18.9 16 290-305 74-89 (302)
56 KOG1103 Predicted coiled-coil 88.1 14 0.0003 41.1 14.5 160 238-430 106-293 (561)
57 TIGR03185 DNA_S_dndD DNA sulfu 88.0 58 0.0013 37.7 22.3 23 29-54 35-57 (650)
58 PRK11637 AmiB activator; Provi 87.9 46 0.001 36.4 24.3 23 243-265 44-66 (428)
59 PRK04778 septation ring format 87.4 60 0.0013 37.2 21.7 68 276-343 272-339 (569)
60 PF09728 Taxilin: Myosin-like 87.2 25 0.00054 37.6 15.7 71 333-417 62-132 (309)
61 PF10168 Nup88: Nuclear pore c 87.1 33 0.00072 40.8 18.0 56 280-339 601-664 (717)
62 PRK03918 chromosome segregatio 86.6 74 0.0016 37.4 25.1 7 48-54 27-33 (880)
63 PF07798 DUF1640: Protein of u 86.4 25 0.00054 34.4 14.1 93 240-336 59-153 (177)
64 PF05010 TACC: Transforming ac 86.0 44 0.00096 34.3 21.6 25 319-343 81-105 (207)
65 PF10186 Atg14: UV radiation r 85.8 41 0.0009 33.8 17.9 12 292-303 69-80 (302)
66 PF04111 APG6: Autophagy prote 85.8 5.8 0.00012 42.3 10.2 58 334-391 56-114 (314)
67 PRK04778 septation ring format 85.6 74 0.0016 36.5 20.1 79 239-329 256-339 (569)
68 PF15035 Rootletin: Ciliary ro 85.6 42 0.00091 33.6 18.0 93 237-341 14-122 (182)
69 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.5 32 0.00068 32.2 17.1 73 241-313 5-79 (132)
70 KOG0579 Ste20-like serine/thre 84.4 99 0.0021 37.5 19.6 71 348-429 1100-1172(1187)
71 PRK04863 mukB cell division pr 84.1 1.2E+02 0.0026 39.2 21.8 23 403-425 453-475 (1486)
72 KOG1853 LIS1-interacting prote 84.0 66 0.0014 34.7 16.6 110 231-359 37-147 (333)
73 cd07652 F-BAR_Rgd1 The F-BAR ( 84.0 19 0.00042 36.7 12.6 105 291-424 91-197 (234)
74 PRK04863 mukB cell division pr 83.9 1.5E+02 0.0032 38.5 23.7 52 327-378 406-471 (1486)
75 PF00901 Orbi_VP5: Orbivirus o 83.7 15 0.00033 42.0 12.6 31 229-265 73-103 (508)
76 KOG0250 DNA repair protein RAD 83.5 1.3E+02 0.0028 37.7 22.3 28 321-348 351-378 (1074)
77 KOG0982 Centrosomal protein Nu 83.3 73 0.0016 36.4 17.3 159 229-392 233-444 (502)
78 PF01576 Myosin_tail_1: Myosin 83.2 0.31 6.7E-06 57.9 -0.6 143 219-368 673-818 (859)
79 PF11559 ADIP: Afadin- and alp 83.1 42 0.0009 31.6 15.8 50 216-265 29-78 (151)
80 KOG4466 Component of histone d 83.0 31 0.00067 37.2 13.8 86 261-370 17-104 (291)
81 PF05667 DUF812: Protein of un 82.4 92 0.002 36.5 18.5 64 361-424 406-479 (594)
82 KOG4787 Uncharacterized conser 82.3 19 0.00041 42.3 12.8 106 241-365 334-439 (852)
83 PRK00409 recombination and DNA 81.8 28 0.00062 41.5 14.6 30 310-339 566-595 (782)
84 KOG0964 Structural maintenance 81.1 1.6E+02 0.0034 36.9 20.5 95 327-423 306-442 (1200)
85 KOG1029 Endocytic adaptor prot 81.0 39 0.00084 41.0 14.9 109 205-319 458-572 (1118)
86 TIGR00634 recN DNA repair prot 81.0 79 0.0017 36.1 17.1 152 212-374 138-312 (563)
87 PF04156 IncA: IncA protein; 80.9 55 0.0012 31.6 15.0 15 247-261 82-96 (191)
88 PF08317 Spc7: Spc7 kinetochor 80.6 85 0.0018 33.5 17.0 57 289-348 180-236 (325)
89 COG4942 Membrane-bound metallo 80.1 1.1E+02 0.0024 34.6 22.2 34 340-373 145-178 (420)
90 TIGR01000 bacteriocin_acc bact 79.9 1E+02 0.0022 34.1 20.6 23 241-263 99-121 (457)
91 KOG1103 Predicted coiled-coil 78.8 1.2E+02 0.0026 34.2 18.8 140 240-384 140-280 (561)
92 TIGR01069 mutS2 MutS2 family p 78.7 33 0.00071 41.0 13.7 58 245-302 524-581 (771)
93 PF09731 Mitofilin: Mitochondr 78.4 1.3E+02 0.0028 34.2 20.4 20 245-264 250-269 (582)
94 PTZ00266 NIMA-related protein 77.9 26 0.00056 43.3 12.8 10 637-646 845-854 (1021)
95 cd07651 F-BAR_PombeCdc15_like 77.5 84 0.0018 31.7 17.3 80 291-380 58-138 (236)
96 TIGR02977 phageshock_pspA phag 77.1 86 0.0019 31.6 18.5 103 241-371 33-135 (219)
97 KOG1850 Myosin-like coiled-coi 77.1 92 0.002 34.5 15.2 117 286-421 22-138 (391)
98 KOG4674 Uncharacterized conser 76.9 2.2E+02 0.0047 37.8 20.5 21 273-293 1280-1300(1822)
99 PF14197 Cep57_CLD_2: Centroso 76.8 25 0.00053 30.3 8.9 61 239-304 5-65 (69)
100 PF01576 Myosin_tail_1: Myosin 76.5 0.81 1.8E-05 54.4 0.0 93 241-333 358-452 (859)
101 PF06428 Sec2p: GDP/GTP exchan 76.5 9 0.0002 35.2 6.6 69 300-368 1-70 (100)
102 PF06705 SF-assemblin: SF-asse 76.3 95 0.0021 31.7 21.3 63 268-330 13-79 (247)
103 COG4942 Membrane-bound metallo 76.1 1.5E+02 0.0032 33.8 18.8 103 239-342 66-178 (420)
104 COG1340 Uncharacterized archae 76.1 1.2E+02 0.0027 32.9 21.2 45 336-380 166-210 (294)
105 KOG0995 Centromere-associated 75.6 1.7E+02 0.0038 34.4 18.3 59 323-381 519-578 (581)
106 PRK10929 putative mechanosensi 75.5 1.5E+02 0.0032 37.5 18.2 64 236-304 170-233 (1109)
107 PF06818 Fez1: Fez1; InterPro 75.2 1.1E+02 0.0023 31.7 16.9 142 241-396 12-172 (202)
108 PRK14154 heat shock protein Gr 75.0 60 0.0013 33.4 12.7 69 235-303 48-116 (208)
109 PF09755 DUF2046: Uncharacteri 74.8 1.4E+02 0.003 32.8 19.8 141 215-373 20-166 (310)
110 COG4717 Uncharacterized conser 74.1 2.3E+02 0.0051 35.1 24.6 96 211-308 153-248 (984)
111 PF13851 GAS: Growth-arrest sp 74.0 1E+02 0.0023 31.1 18.0 110 316-429 57-173 (201)
112 KOG3915 Transcription regulato 73.9 23 0.00049 40.7 10.1 57 243-318 511-567 (641)
113 PF15619 Lebercilin: Ciliary p 73.8 1.1E+02 0.0023 31.1 15.2 112 239-371 12-140 (194)
114 TIGR03185 DNA_S_dndD DNA sulfu 73.6 1.8E+02 0.004 33.7 20.5 28 250-277 388-415 (650)
115 COG0419 SbcC ATPase involved i 72.9 2.2E+02 0.0048 34.4 24.4 45 217-262 472-517 (908)
116 PF09730 BicD: Microtubule-ass 72.9 1.6E+02 0.0035 35.5 17.1 164 201-389 534-701 (717)
117 COG1842 PspA Phage shock prote 72.8 1.2E+02 0.0027 31.4 17.5 73 241-338 33-105 (225)
118 PF15254 CCDC14: Coiled-coil d 72.8 91 0.002 37.9 14.9 75 288-365 382-471 (861)
119 PF11559 ADIP: Afadin- and alp 72.6 87 0.0019 29.5 14.3 111 236-371 35-148 (151)
120 cd07675 F-BAR_FNBP1L The F-BAR 72.5 1.1E+02 0.0025 32.2 14.3 13 381-393 215-227 (252)
121 KOG4674 Uncharacterized conser 72.5 2.2E+02 0.0047 37.9 19.0 94 294-387 1026-1126(1822)
122 PF05103 DivIVA: DivIVA protei 72.4 2.7 5.9E-05 37.9 2.3 38 343-380 87-124 (131)
123 PF10473 CENP-F_leu_zip: Leuci 71.5 1E+02 0.0023 30.0 15.8 34 331-364 83-116 (140)
124 KOG0993 Rab5 GTPase effector R 71.4 96 0.0021 35.4 14.0 129 241-375 40-174 (542)
125 PRK00409 recombination and DNA 71.3 1.4E+02 0.003 36.0 16.3 19 266-284 515-533 (782)
126 PF04849 HAP1_N: HAP1 N-termin 71.1 1.5E+02 0.0033 32.3 15.1 200 210-429 60-302 (306)
127 COG3524 KpsE Capsule polysacch 70.9 18 0.0004 39.5 8.3 54 204-261 192-245 (372)
128 PF05837 CENP-H: Centromere pr 70.5 84 0.0018 28.7 11.3 42 286-327 3-44 (106)
129 PF00261 Tropomyosin: Tropomyo 70.1 1.3E+02 0.0029 30.6 18.6 144 231-381 84-229 (237)
130 PF12325 TMF_TATA_bd: TATA ele 70.1 1E+02 0.0022 29.3 14.1 41 239-279 23-63 (120)
131 PF14931 IFT20: Intraflagellar 69.8 37 0.0008 32.1 9.1 80 344-427 22-108 (120)
132 COG2433 Uncharacterized conser 69.7 67 0.0015 38.0 12.8 68 241-308 424-496 (652)
133 TIGR01069 mutS2 MutS2 family p 69.7 1.4E+02 0.0031 35.8 16.0 17 266-282 510-526 (771)
134 PF05667 DUF812: Protein of un 69.4 2.4E+02 0.0052 33.3 18.0 41 241-281 330-370 (594)
135 KOG0979 Structural maintenance 69.0 3.1E+02 0.0068 34.5 20.4 172 247-422 182-390 (1072)
136 KOG0288 WD40 repeat protein Ti 69.0 1.3E+02 0.0028 34.3 14.4 34 379-412 107-140 (459)
137 COG0419 SbcC ATPase involved i 68.9 2.7E+02 0.0059 33.7 25.3 7 48-54 29-35 (908)
138 PF05911 DUF869: Plant protein 68.9 2.6E+02 0.0057 34.0 17.8 126 238-370 588-715 (769)
139 TIGR02231 conserved hypothetic 68.0 47 0.001 37.3 11.1 68 240-309 72-147 (525)
140 PF15294 Leu_zip: Leucine zipp 67.8 1.8E+02 0.004 31.4 16.5 81 291-376 130-210 (278)
141 KOG2008 BTK-associated SH3-dom 67.4 2.1E+02 0.0046 31.9 19.3 123 221-347 9-149 (426)
142 KOG4364 Chromatin assembly fac 67.0 2E+02 0.0044 34.7 15.9 42 303-344 296-337 (811)
143 PRK14140 heat shock protein Gr 67.0 1.3E+02 0.0029 30.6 13.0 68 235-302 33-100 (191)
144 cd07653 F-BAR_CIP4-like The F- 66.6 1.5E+02 0.0032 29.9 17.9 80 297-376 95-174 (251)
145 PF10174 Cast: RIM-binding pro 66.5 3.1E+02 0.0067 33.5 23.9 177 203-379 285-488 (775)
146 PRK09174 F0F1 ATP synthase sub 66.4 1.5E+02 0.0033 30.0 13.8 74 298-371 89-164 (204)
147 KOG4673 Transcription factor T 66.4 3.1E+02 0.0067 33.5 22.1 166 244-430 344-512 (961)
148 COG2433 Uncharacterized conser 66.2 1.1E+02 0.0025 36.2 13.7 40 346-389 478-517 (652)
149 KOG2002 TPR-containing nuclear 66.0 2.1E+02 0.0045 35.8 16.2 74 214-298 712-785 (1018)
150 KOG4572 Predicted DNA-binding 65.9 2.3E+02 0.0051 35.1 16.3 27 583-609 1261-1287(1424)
151 KOG1265 Phospholipase C [Lipid 65.5 3.6E+02 0.0078 33.9 18.1 66 360-428 1113-1179(1189)
152 PF15070 GOLGA2L5: Putative go 65.5 2.9E+02 0.0062 32.8 21.6 189 221-427 20-237 (617)
153 PRK01156 chromosome segregatio 65.4 3E+02 0.0065 33.0 24.3 16 216-231 147-162 (895)
154 PLN03188 kinesin-12 family pro 65.0 3.8E+02 0.0083 34.6 18.5 37 231-267 1057-1093(1320)
155 PRK10884 SH3 domain-containing 64.8 1.1E+02 0.0025 31.2 12.1 26 236-261 90-115 (206)
156 PRK00106 hypothetical protein; 64.0 2.9E+02 0.0063 32.3 17.3 9 251-259 40-48 (535)
157 PF14915 CCDC144C: CCDC144C pr 64.0 1.8E+02 0.0039 31.9 13.8 107 239-362 179-291 (305)
158 PRK12704 phosphodiesterase; Pr 64.0 2.8E+02 0.006 32.1 17.2 15 305-319 88-102 (520)
159 COG4477 EzrA Negative regulato 63.6 3.1E+02 0.0066 32.4 16.6 151 206-369 240-402 (570)
160 PF04111 APG6: Autophagy prote 63.6 1.5E+02 0.0032 31.9 13.3 23 203-225 14-36 (314)
161 KOG0163 Myosin class VI heavy 63.2 2.5E+02 0.0055 34.6 15.9 26 335-360 1001-1026(1259)
162 PF03245 Phage_lysis: Bacterio 62.6 57 0.0012 30.7 8.9 69 284-353 5-73 (125)
163 PTZ00266 NIMA-related protein 62.4 95 0.0021 38.7 12.9 15 105-119 270-284 (1021)
164 KOG0018 Structural maintenance 61.9 3.3E+02 0.0072 34.5 17.0 14 304-317 274-287 (1141)
165 TIGR01000 bacteriocin_acc bact 61.8 2.6E+02 0.0056 31.0 19.5 20 398-417 297-316 (457)
166 PF05615 THOC7: Tho complex su 61.7 1.4E+02 0.003 28.0 11.2 60 312-371 44-103 (139)
167 KOG4677 Golgi integral membran 61.6 3.1E+02 0.0068 31.9 16.9 51 190-256 173-223 (554)
168 PRK00106 hypothetical protein; 61.3 3.2E+02 0.007 31.9 23.7 14 249-262 49-62 (535)
169 KOG0980 Actin-binding protein 61.0 4.2E+02 0.009 33.1 21.7 56 214-274 345-400 (980)
170 KOG1962 B-cell receptor-associ 60.6 94 0.002 32.4 10.7 62 319-380 149-210 (216)
171 PRK14145 heat shock protein Gr 60.5 1.8E+02 0.0038 29.9 12.5 67 238-304 44-110 (196)
172 PF04108 APG17: Autophagy prot 60.4 2.5E+02 0.0054 31.2 14.7 33 328-360 346-378 (412)
173 KOG0018 Structural maintenance 60.4 4.6E+02 0.0099 33.4 22.2 24 399-422 419-442 (1141)
174 PRK14151 heat shock protein Gr 60.2 1.7E+02 0.0037 29.3 12.2 67 237-303 18-84 (176)
175 PRK14143 heat shock protein Gr 60.1 1.7E+02 0.0037 30.7 12.6 46 240-285 68-113 (238)
176 smart00498 FH2 Formin Homology 59.4 84 0.0018 34.7 10.9 107 248-354 319-431 (432)
177 KOG0804 Cytoplasmic Zn-finger 59.3 2.6E+02 0.0057 32.3 14.6 65 245-323 346-412 (493)
178 PRK13454 F0F1 ATP synthase sub 58.7 1.9E+02 0.0042 28.5 17.4 81 244-330 56-136 (181)
179 PF02185 HR1: Hr1 repeat; Int 58.7 35 0.00076 28.6 6.2 23 295-317 3-25 (70)
180 PRK12704 phosphodiesterase; Pr 58.5 3.4E+02 0.0074 31.3 18.1 13 293-305 64-76 (520)
181 PRK14162 heat shock protein Gr 58.4 2.1E+02 0.0045 29.3 12.6 64 239-302 39-102 (194)
182 PRK14139 heat shock protein Gr 58.3 1.9E+02 0.0041 29.3 12.2 64 240-303 33-96 (185)
183 PF13514 AAA_27: AAA domain 58.0 4.6E+02 0.0099 32.6 23.1 31 400-430 809-839 (1111)
184 PTZ00121 MAEBL; Provisional 57.4 6E+02 0.013 33.8 20.9 18 46-64 773-790 (2084)
185 KOG1899 LAR transmembrane tyro 56.6 4.4E+02 0.0095 32.0 16.4 98 231-334 91-194 (861)
186 PRK14146 heat shock protein Gr 56.6 2E+02 0.0043 29.8 12.3 64 240-303 55-118 (215)
187 PF05911 DUF869: Plant protein 56.5 4.5E+02 0.0098 32.1 19.4 13 413-425 214-226 (769)
188 KOG0249 LAR-interacting protei 56.5 4.6E+02 0.01 32.2 16.5 64 334-403 222-285 (916)
189 PF13851 GAS: Growth-arrest sp 56.2 2.3E+02 0.005 28.7 22.6 184 216-430 10-195 (201)
190 PF13863 DUF4200: Domain of un 55.7 1.6E+02 0.0034 26.6 14.7 51 318-375 50-100 (126)
191 PF08647 BRE1: BRE1 E3 ubiquit 55.5 1.6E+02 0.0034 26.5 12.5 78 258-340 18-95 (96)
192 KOG4807 F-actin binding protei 55.3 3.8E+02 0.0082 30.9 16.6 89 227-335 373-463 (593)
193 PRK14156 heat shock protein Gr 55.2 1.8E+02 0.0039 29.3 11.5 59 243-301 31-89 (177)
194 PRK14158 heat shock protein Gr 55.2 1.1E+02 0.0025 31.1 10.2 72 236-335 37-108 (194)
195 PF05700 BCAS2: Breast carcino 55.1 2.5E+02 0.0053 28.6 17.5 41 272-318 125-165 (221)
196 PRK01156 chromosome segregatio 54.9 4.5E+02 0.0097 31.6 25.2 32 240-271 470-501 (895)
197 TIGR03752 conj_TIGR03752 integ 54.5 1.4E+02 0.003 34.4 11.7 58 241-306 61-118 (472)
198 KOG0288 WD40 repeat protein Ti 54.5 3.9E+02 0.0085 30.8 15.0 32 321-352 100-131 (459)
199 KOG2072 Translation initiation 54.3 5.2E+02 0.011 32.2 19.1 53 252-304 669-744 (988)
200 COG1579 Zn-ribbon protein, pos 54.2 2.9E+02 0.0063 29.2 19.4 19 409-427 163-181 (239)
201 PF05010 TACC: Transforming ac 53.9 2.7E+02 0.0059 28.7 17.0 49 311-359 151-206 (207)
202 KOG0239 Kinesin (KAR3 subfamil 53.7 4.2E+02 0.0091 31.8 15.8 42 236-277 179-220 (670)
203 KOG0980 Actin-binding protein 53.7 5.4E+02 0.012 32.2 23.1 42 319-360 436-477 (980)
204 PF08549 SWI-SNF_Ssr4: Fungal 53.3 22 0.00047 42.1 5.4 85 345-429 360-464 (669)
205 KOG4403 Cell surface glycoprot 52.9 89 0.0019 35.9 9.7 24 317-340 305-328 (575)
206 PF14942 Muted: Organelle biog 52.9 2.3E+02 0.005 27.7 14.9 54 266-319 20-75 (145)
207 PF14915 CCDC144C: CCDC144C pr 52.8 3.5E+02 0.0076 29.7 21.2 96 241-343 8-113 (305)
208 TIGR02680 conserved hypothetic 52.6 6.2E+02 0.014 32.6 25.1 12 488-499 1070-1081(1353)
209 PF09763 Sec3_C: Exocyst compl 51.8 1.5E+02 0.0032 34.8 11.8 94 312-428 3-97 (701)
210 cd07673 F-BAR_FCHO2 The F-BAR 51.6 3.1E+02 0.0067 28.8 19.9 36 342-377 134-171 (269)
211 PF05837 CENP-H: Centromere pr 51.6 1.5E+02 0.0033 27.1 9.5 28 332-359 62-89 (106)
212 cd07673 F-BAR_FCHO2 The F-BAR 51.3 3.1E+02 0.0068 28.7 16.7 43 308-354 155-198 (269)
213 PRK14147 heat shock protein Gr 51.2 97 0.0021 30.9 8.8 69 239-335 18-86 (172)
214 PF09727 CortBP2: Cortactin-bi 51.0 2.9E+02 0.0062 28.5 12.2 45 298-342 146-190 (192)
215 PF14523 Syntaxin_2: Syntaxin- 50.7 1.6E+02 0.0035 25.5 9.3 67 252-341 32-98 (102)
216 smart00787 Spc7 Spc7 kinetocho 50.7 3.6E+02 0.0078 29.3 16.8 54 288-344 174-227 (312)
217 TIGR00634 recN DNA repair prot 50.4 4.4E+02 0.0096 30.2 22.0 36 286-321 189-233 (563)
218 TIGR01005 eps_transp_fam exopo 50.2 4.9E+02 0.011 30.7 18.3 66 306-374 319-387 (754)
219 PF08397 IMD: IRSp53/MIM homol 50.1 2.8E+02 0.0062 27.9 14.4 128 206-351 42-184 (219)
220 PRK14163 heat shock protein Gr 49.9 3.1E+02 0.0068 28.5 12.4 64 241-304 42-105 (214)
221 PF09744 Jnk-SapK_ap_N: JNK_SA 49.8 2.7E+02 0.0059 27.6 13.2 89 212-307 2-92 (158)
222 PRK14153 heat shock protein Gr 49.7 2.2E+02 0.0047 29.2 11.2 45 241-285 35-79 (194)
223 PRK10884 SH3 domain-containing 49.3 3.1E+02 0.0067 28.1 12.2 29 312-340 137-165 (206)
224 PF09304 Cortex-I_coil: Cortex 49.0 2.4E+02 0.0052 26.8 14.9 71 239-314 16-86 (107)
225 PF15236 CCDC66: Coiled-coil d 49.0 2.4E+02 0.0051 28.2 11.0 68 271-350 61-128 (157)
226 PRK14155 heat shock protein Gr 49.0 3E+02 0.0064 28.4 12.1 62 242-303 16-77 (208)
227 PF10473 CENP-F_leu_zip: Leuci 49.0 2.7E+02 0.0058 27.3 17.7 20 339-358 77-96 (140)
228 cd07657 F-BAR_Fes_Fer The F-BA 48.9 3.3E+02 0.0071 28.2 14.3 34 308-341 106-139 (237)
229 PLN02372 violaxanthin de-epoxi 48.8 2E+02 0.0043 33.0 11.5 60 288-350 375-437 (455)
230 PF13863 DUF4200: Domain of un 48.8 2.1E+02 0.0045 25.9 16.6 109 244-353 12-120 (126)
231 PF09728 Taxilin: Myosin-like 48.7 3.8E+02 0.0082 28.9 21.1 27 385-411 155-181 (309)
232 PRK14474 F0F1 ATP synthase sub 48.6 3.4E+02 0.0073 28.3 16.3 13 491-505 221-233 (250)
233 PF13935 Ead_Ea22: Ead/Ea22-li 48.1 2.1E+02 0.0045 27.3 10.2 25 237-261 65-89 (139)
234 PF03962 Mnd1: Mnd1 family; I 47.6 3.1E+02 0.0067 27.6 12.1 18 359-376 131-148 (188)
235 KOG2264 Exostosin EXT1L [Signa 47.6 86 0.0019 37.2 8.8 48 321-378 82-129 (907)
236 PF08614 ATG16: Autophagy prot 47.5 2.9E+02 0.0064 27.3 12.3 87 236-327 99-185 (194)
237 PF05622 HOOK: HOOK protein; 47.2 9.1 0.0002 44.6 1.3 103 316-428 234-357 (713)
238 KOG4643 Uncharacterized coiled 47.1 7.2E+02 0.016 31.7 21.4 96 243-347 374-469 (1195)
239 PLN03188 kinesin-12 family pro 46.7 7.9E+02 0.017 32.0 20.9 66 236-301 1076-1143(1320)
240 PF15035 Rootletin: Ciliary ro 46.3 2.6E+02 0.0056 28.1 11.0 69 218-288 60-130 (182)
241 PF07200 Mod_r: Modifier of ru 46.2 2.6E+02 0.0056 26.2 17.0 128 216-371 5-132 (150)
242 KOG3915 Transcription regulato 46.1 2.3E+02 0.0049 33.1 11.5 45 296-347 531-575 (641)
243 PRK14148 heat shock protein Gr 45.9 3.5E+02 0.0076 27.7 12.5 64 239-302 40-103 (195)
244 PRK10476 multidrug resistance 45.1 4E+02 0.0086 28.2 15.2 21 241-261 88-108 (346)
245 KOG3433 Protein involved in me 44.8 2.2E+02 0.0048 29.5 10.2 60 317-376 84-143 (203)
246 PF14932 HAUS-augmin3: HAUS au 44.7 3.4E+02 0.0075 28.2 12.0 80 286-368 68-147 (256)
247 PF09787 Golgin_A5: Golgin sub 44.7 4.7E+02 0.01 29.9 14.0 34 270-303 158-191 (511)
248 PF15254 CCDC14: Coiled-coil d 44.0 6.6E+02 0.014 31.1 15.3 20 239-258 387-406 (861)
249 PRK04654 sec-independent trans 43.9 1.6E+02 0.0035 30.8 9.3 32 312-343 25-56 (214)
250 PF05557 MAD: Mitotic checkpoi 43.9 26 0.00055 41.1 4.2 20 409-428 562-581 (722)
251 PRK13454 F0F1 ATP synthase sub 43.9 3.3E+02 0.0072 26.9 14.5 73 299-371 68-142 (181)
252 PF01025 GrpE: GrpE; InterPro 43.8 58 0.0012 30.8 5.8 49 241-289 13-61 (165)
253 PF04156 IncA: IncA protein; 43.6 3.1E+02 0.0068 26.5 15.9 35 351-385 153-187 (191)
254 TIGR03319 YmdA_YtgF conserved 43.4 5.8E+02 0.012 29.5 18.2 14 305-318 82-95 (514)
255 KOG0962 DNA repair protein RAD 42.7 9E+02 0.019 31.5 22.2 36 331-366 916-951 (1294)
256 cd07598 BAR_FAM92 The Bin/Amph 42.6 3.9E+02 0.0085 27.4 21.2 117 218-352 42-164 (211)
257 cd07648 F-BAR_FCHO The F-BAR ( 42.6 3.9E+02 0.0085 27.3 17.8 31 207-237 11-41 (261)
258 PLN03229 acetyl-coenzyme A car 42.6 1.7E+02 0.0038 35.5 10.5 19 349-367 558-582 (762)
259 KOG3612 PHD Zn-finger protein 42.5 1.7E+02 0.0036 34.5 10.0 21 306-326 463-483 (588)
260 KOG2891 Surface glycoprotein [ 42.3 5.2E+02 0.011 28.6 14.5 20 356-375 390-409 (445)
261 KOG0247 Kinesin-like protein [ 41.9 4.9E+02 0.011 31.9 13.9 101 269-373 491-591 (809)
262 PRK14160 heat shock protein Gr 41.8 4.2E+02 0.0092 27.5 12.7 62 241-302 63-124 (211)
263 PF03962 Mnd1: Mnd1 family; I 41.6 3.6E+02 0.0078 27.1 11.2 11 214-224 29-39 (188)
264 KOG0995 Centromere-associated 41.4 6.9E+02 0.015 29.8 24.2 62 201-265 220-292 (581)
265 PRK14141 heat shock protein Gr 41.2 4.3E+02 0.0093 27.4 12.0 60 244-303 36-95 (209)
266 PRK11281 hypothetical protein; 41.0 3.3E+02 0.0072 34.5 12.9 29 239-267 192-220 (1113)
267 PF13935 Ead_Ea22: Ead/Ea22-li 40.1 2.5E+02 0.0054 26.7 9.4 17 343-359 120-136 (139)
268 KOG4348 Adaptor protein CMS/SE 40.0 98 0.0021 35.7 7.6 54 245-320 568-621 (627)
269 cd07645 I-BAR_IMD_BAIAP2L1 Inv 39.7 4.9E+02 0.011 27.6 16.2 149 206-371 52-215 (226)
270 PF11855 DUF3375: Protein of u 39.6 2.6E+02 0.0057 31.7 11.0 110 209-326 93-215 (478)
271 PRK09174 F0F1 ATP synthase sub 39.6 4.3E+02 0.0092 26.9 19.7 79 216-306 62-140 (204)
272 PF07794 DUF1633: Protein of u 39.4 4.1E+02 0.0088 31.5 12.3 66 203-274 574-639 (790)
273 cd07625 BAR_Vps17p The Bin/Amp 39.4 4.7E+02 0.01 27.4 13.7 52 273-324 140-192 (230)
274 COG1322 Predicted nuclease of 39.0 6.5E+02 0.014 28.9 15.0 33 343-375 144-176 (448)
275 TIGR01005 eps_transp_fam exopo 38.7 7.2E+02 0.016 29.3 15.8 40 239-278 288-327 (754)
276 cd07672 F-BAR_PSTPIP2 The F-BA 38.7 4.7E+02 0.01 27.2 19.0 26 200-225 4-29 (240)
277 PRK07352 F0F1 ATP synthase sub 38.5 3.8E+02 0.0082 26.0 15.6 127 220-354 40-171 (174)
278 KOG4661 Hsp27-ERE-TATA-binding 38.4 4E+02 0.0087 32.0 12.2 15 335-349 663-677 (940)
279 CHL00019 atpF ATP synthase CF0 38.3 3.9E+02 0.0086 26.2 16.5 29 250-278 55-83 (184)
280 TIGR01541 tape_meas_lam_C phag 37.6 5.9E+02 0.013 27.9 16.4 42 388-430 153-194 (332)
281 PF09636 XkdW: XkdW protein; 37.5 11 0.00024 35.4 0.0 38 294-331 66-103 (108)
282 PF00901 Orbi_VP5: Orbivirus o 37.5 7.4E+02 0.016 29.1 16.7 18 288-305 142-159 (508)
283 PRK10246 exonuclease subunit S 37.2 9.2E+02 0.02 30.1 22.9 20 242-261 619-638 (1047)
284 PF11932 DUF3450: Protein of u 37.1 4.8E+02 0.01 26.7 14.7 109 238-361 13-121 (251)
285 PF10267 Tmemb_cc2: Predicted 36.9 4.5E+02 0.0098 29.7 12.1 41 332-375 248-288 (395)
286 KOG4661 Hsp27-ERE-TATA-binding 36.7 3.1E+02 0.0068 32.8 11.0 15 277-291 615-629 (940)
287 PF14712 Snapin_Pallidin: Snap 36.7 2.8E+02 0.0061 24.0 10.5 76 238-320 6-81 (92)
288 PRK08476 F0F1 ATP synthase sub 36.5 3.8E+02 0.0082 25.4 15.3 59 245-303 33-91 (141)
289 PF13514 AAA_27: AAA domain 36.4 9.5E+02 0.021 30.0 24.2 34 245-278 742-775 (1111)
290 PRK10869 recombination and rep 36.3 7.4E+02 0.016 28.7 23.6 147 211-368 133-301 (553)
291 KOG0946 ER-Golgi vesicle-tethe 36.2 9.3E+02 0.02 30.2 15.0 128 241-381 680-838 (970)
292 KOG4460 Nuclear pore complex, 35.5 3.3E+02 0.0071 32.5 10.9 58 333-390 600-657 (741)
293 PF10146 zf-C4H2: Zinc finger- 35.1 5.5E+02 0.012 26.9 14.3 13 295-307 37-49 (230)
294 PRK14144 heat shock protein Gr 35.0 2.7E+02 0.0059 28.7 9.3 67 241-335 47-113 (199)
295 KOG2129 Uncharacterized conser 34.9 2.5E+02 0.0053 32.4 9.6 68 253-339 253-320 (552)
296 KOG2891 Surface glycoprotein [ 34.9 6.7E+02 0.015 27.8 14.1 17 339-355 391-407 (445)
297 PRK14161 heat shock protein Gr 34.8 4.9E+02 0.011 26.2 11.9 60 243-302 23-82 (178)
298 PF06005 DUF904: Protein of un 34.5 1.6E+02 0.0034 25.8 6.5 56 235-298 14-69 (72)
299 PF05529 Bap31: B-cell recepto 33.7 1.5E+02 0.0033 29.0 7.1 18 361-378 173-190 (192)
300 PF14739 DUF4472: Domain of un 33.7 4.2E+02 0.0091 25.1 9.6 95 214-344 6-100 (108)
301 PF13801 Metal_resist: Heavy-m 33.6 1.4E+02 0.0029 25.5 6.1 64 240-307 60-123 (125)
302 PRK13428 F0F1 ATP synthase sub 33.5 7.5E+02 0.016 28.0 17.6 116 301-427 40-159 (445)
303 PF00769 ERM: Ezrin/radixin/mo 33.5 5.8E+02 0.012 26.6 15.3 22 353-374 79-100 (246)
304 PF04977 DivIC: Septum formati 33.3 1.5E+02 0.0032 24.4 6.0 36 237-272 15-50 (80)
305 PF04778 LMP: LMP repeated reg 33.2 3.6E+02 0.0078 27.1 9.4 72 245-317 71-146 (157)
306 PF15290 Syntaphilin: Golgi-lo 32.6 6E+02 0.013 28.0 11.7 85 241-339 70-156 (305)
307 PF09787 Golgin_A5: Golgin sub 32.6 8.1E+02 0.017 28.0 22.2 165 203-380 114-291 (511)
308 PF09036 Bcr-Abl_Oligo: Bcr-Ab 32.4 1.1E+02 0.0024 27.5 5.3 42 241-282 28-69 (79)
309 PRK10361 DNA recombination pro 32.4 8.6E+02 0.019 28.3 18.1 125 241-379 62-188 (475)
310 PRK05658 RNA polymerase sigma 32.0 8.9E+02 0.019 28.3 14.4 35 245-279 249-283 (619)
311 PF05266 DUF724: Protein of un 31.9 5.6E+02 0.012 26.0 13.9 107 259-381 78-184 (190)
312 COG1340 Uncharacterized archae 31.8 7.2E+02 0.016 27.3 22.6 71 288-358 153-223 (294)
313 PRK09039 hypothetical protein; 31.7 7.1E+02 0.015 27.2 14.5 28 287-314 54-81 (343)
314 PRK04654 sec-independent trans 31.4 2.4E+02 0.0051 29.6 8.2 16 293-308 41-56 (214)
315 PF09744 Jnk-SapK_ap_N: JNK_SA 31.3 5.3E+02 0.012 25.6 15.0 24 290-313 54-77 (158)
316 PF06428 Sec2p: GDP/GTP exchan 31.1 2.6E+02 0.0055 25.9 7.6 63 247-327 2-64 (100)
317 cd04779 HTH_MerR-like_sg4 Heli 31.0 1.3E+02 0.0028 28.7 6.0 48 206-263 51-98 (134)
318 PF02970 TBCA: Tubulin binding 31.0 2.2E+02 0.0048 25.5 7.1 75 348-431 6-80 (90)
319 PF03938 OmpH: Outer membrane 30.5 4.5E+02 0.0097 24.5 10.8 10 330-339 118-127 (158)
320 KOG0978 E3 ubiquitin ligase in 30.3 1.1E+03 0.024 28.9 23.2 128 243-377 397-531 (698)
321 PF09798 LCD1: DNA damage chec 30.1 1.5E+02 0.0033 35.4 7.4 48 252-307 3-50 (654)
322 PF06632 XRCC4: DNA double-str 29.9 4.6E+02 0.01 29.0 10.6 47 330-376 160-207 (342)
323 PRK10246 exonuclease subunit S 29.5 1.2E+03 0.026 29.1 22.4 43 216-262 165-207 (1047)
324 KOG4643 Uncharacterized coiled 29.4 1.3E+03 0.029 29.6 21.6 56 321-376 502-557 (1195)
325 cd07605 I-BAR_IMD Inverse (I)- 29.2 6.7E+02 0.015 26.1 18.4 135 207-359 53-203 (223)
326 KOG4673 Transcription factor T 29.2 1.2E+03 0.026 28.9 24.3 11 218-228 346-356 (961)
327 PF14992 TMCO5: TMCO5 family 29.2 4.6E+02 0.01 28.5 10.2 40 348-400 143-182 (280)
328 PF05622 HOOK: HOOK protein; 29.1 18 0.0004 42.2 0.0 13 292-304 290-302 (713)
329 KOG1265 Phospholipase C [Lipid 29.0 9E+02 0.019 30.7 13.4 81 263-353 1085-1165(1189)
330 PRK01919 tatB sec-independent 29.0 2.5E+02 0.0055 28.4 7.8 17 290-306 38-54 (169)
331 COG1842 PspA Phage shock prote 28.9 6.8E+02 0.015 26.1 19.2 112 290-407 28-144 (225)
332 PF09969 DUF2203: Uncharacteri 28.6 2.1E+02 0.0045 27.1 6.8 33 236-268 10-42 (120)
333 PF07058 Myosin_HC-like: Myosi 28.4 8.8E+02 0.019 27.2 12.2 18 321-338 45-65 (351)
334 TIGR03319 YmdA_YtgF conserved 28.3 9.8E+02 0.021 27.7 22.1 13 293-305 58-70 (514)
335 PF05529 Bap31: B-cell recepto 27.8 5.6E+02 0.012 25.1 9.9 57 248-304 113-172 (192)
336 PRK13428 F0F1 ATP synthase sub 27.7 9.3E+02 0.02 27.2 17.5 19 337-355 137-155 (445)
337 PF14073 Cep57_CLD: Centrosome 27.7 6.8E+02 0.015 25.7 19.2 153 240-406 2-164 (178)
338 cd07602 BAR_RhoGAP_OPHN1-like 27.5 7.1E+02 0.015 25.8 13.8 25 241-265 4-28 (207)
339 PF15619 Lebercilin: Ciliary p 27.4 6.7E+02 0.015 25.5 15.0 23 241-263 70-92 (194)
340 COG3074 Uncharacterized protei 27.4 3.3E+02 0.0071 24.5 7.2 57 236-296 15-74 (79)
341 cd07686 F-BAR_Fer The F-BAR (F 27.3 5.6E+02 0.012 26.9 10.2 19 306-324 104-122 (234)
342 PF05483 SCP-1: Synaptonemal c 26.9 1.3E+03 0.027 28.5 23.1 88 241-336 427-521 (786)
343 KOG0982 Centrosomal protein Nu 26.8 1.1E+03 0.023 27.6 17.9 41 24-71 17-57 (502)
344 PF13747 DUF4164: Domain of un 26.8 4.7E+02 0.01 23.5 10.7 43 318-360 36-78 (89)
345 PF04871 Uso1_p115_C: Uso1 / p 26.7 5.8E+02 0.013 24.5 12.2 18 299-316 4-21 (136)
346 cd07652 F-BAR_Rgd1 The F-BAR ( 26.6 7.2E+02 0.016 25.6 14.6 81 290-380 62-142 (234)
347 PF06785 UPF0242: Uncharacteri 26.6 9.8E+02 0.021 27.1 16.6 63 310-372 102-171 (401)
348 PF08172 CASP_C: CASP C termin 26.5 6.3E+02 0.014 26.7 10.5 31 292-329 5-35 (248)
349 PRK14157 heat shock protein Gr 26.3 7.9E+02 0.017 26.0 11.4 61 243-303 81-141 (227)
350 PRK10132 hypothetical protein; 26.3 5.1E+02 0.011 24.2 8.8 51 252-302 11-61 (108)
351 PF14643 DUF4455: Domain of un 26.1 1E+03 0.022 27.0 20.7 94 264-359 22-118 (473)
352 PF01991 vATP-synt_E: ATP synt 26.0 5.8E+02 0.013 24.3 13.1 14 249-262 4-17 (198)
353 PRK06231 F0F1 ATP synthase sub 26.0 7E+02 0.015 25.3 15.9 64 306-371 92-159 (205)
354 PF09304 Cortex-I_coil: Cortex 25.9 5.8E+02 0.013 24.3 12.4 64 291-368 14-77 (107)
355 PF08317 Spc7: Spc7 kinetochor 25.7 8.5E+02 0.018 26.1 20.7 121 246-384 107-230 (325)
356 smart00787 Spc7 Spc7 kinetocho 25.3 9.1E+02 0.02 26.3 17.4 90 247-347 103-198 (312)
357 PRK15178 Vi polysaccharide exp 25.2 3.9E+02 0.0084 30.6 9.3 32 230-261 277-308 (434)
358 KOG4421 Uncharacterized conser 25.2 3.3E+02 0.0071 31.1 8.5 123 222-370 32-173 (637)
359 KOG4571 Activating transcripti 25.0 2.9E+02 0.0063 30.2 7.9 29 338-366 258-286 (294)
360 PF10454 DUF2458: Protein of u 24.6 6.8E+02 0.015 24.6 11.0 15 251-265 25-39 (150)
361 PF10147 CR6_interact: Growth 24.6 7.5E+02 0.016 26.0 10.5 45 248-292 80-124 (217)
362 PF01865 PhoU_div: Protein of 24.6 6.7E+02 0.015 24.5 14.2 126 247-378 41-174 (214)
363 PF12777 MT: Microtubule-bindi 24.4 9.2E+02 0.02 26.0 12.8 89 239-342 15-103 (344)
364 PF09738 DUF2051: Double stran 23.8 7.4E+02 0.016 27.0 10.7 71 316-386 79-163 (302)
365 PF12777 MT: Microtubule-bindi 23.7 9E+02 0.019 26.1 11.3 24 396-419 79-102 (344)
366 KOG0579 Ste20-like serine/thre 23.3 1.5E+03 0.033 28.2 17.1 26 402-428 917-942 (1187)
367 cd07596 BAR_SNX The Bin/Amphip 23.3 5.1E+02 0.011 24.6 8.5 91 207-300 95-199 (218)
368 PF09730 BicD: Microtubule-ass 23.3 1.4E+03 0.031 27.9 19.3 103 311-428 73-185 (717)
369 PF10168 Nup88: Nuclear pore c 22.9 1.4E+03 0.031 27.7 17.8 18 262-279 556-573 (717)
370 PF02183 HALZ: Homeobox associ 22.9 1.8E+02 0.0039 23.3 4.5 35 347-381 3-37 (45)
371 PF11262 Tho2: Transcription f 22.9 2E+02 0.0044 30.6 6.3 52 241-292 48-100 (298)
372 TIGR03017 EpsF chain length de 22.9 1E+03 0.022 25.9 21.0 33 234-266 166-198 (444)
373 PF15456 Uds1: Up-regulated Du 22.8 3.2E+02 0.007 26.1 7.0 83 284-370 27-109 (124)
374 KOG0993 Rab5 GTPase effector R 22.8 1.3E+03 0.027 27.0 16.4 126 239-371 345-491 (542)
375 KOG4466 Component of histone d 22.7 5.4E+02 0.012 28.2 9.2 77 295-391 62-140 (291)
376 PF10212 TTKRSYEDQ: Predicted 22.5 6E+02 0.013 29.9 10.1 24 240-263 303-326 (518)
377 PF07106 TBPIP: Tat binding pr 22.3 7.1E+02 0.015 24.0 9.9 46 237-282 70-115 (169)
378 TIGR02231 conserved hypothetic 22.2 8.3E+02 0.018 27.7 11.2 29 244-272 69-97 (525)
379 KOG1451 Oligophrenin-1 and rel 22.1 1.5E+03 0.032 27.7 15.0 32 242-277 23-54 (812)
380 KOG0804 Cytoplasmic Zn-finger 22.1 1.3E+03 0.028 27.0 12.6 107 310-430 347-455 (493)
381 TIGR03794 NHPM_micro_HlyD NHPM 22.0 1.1E+03 0.023 25.9 18.1 19 242-260 99-117 (421)
382 KOG0963 Transcription factor/C 22.0 1.5E+03 0.032 27.5 20.0 59 280-338 109-173 (629)
383 TIGR03017 EpsF chain length de 21.9 1E+03 0.023 25.8 15.5 59 203-261 176-237 (444)
384 PF02970 TBCA: Tubulin binding 21.7 5.9E+02 0.013 22.8 8.1 24 253-276 7-30 (90)
385 PRK03598 putative efflux pump 21.6 9.5E+02 0.021 25.2 14.6 24 292-315 113-136 (331)
386 TIGR03545 conserved hypothetic 21.4 1.4E+03 0.03 27.0 14.1 42 236-278 161-202 (555)
387 PF15397 DUF4618: Domain of un 21.4 1E+03 0.023 25.6 16.1 122 237-386 22-150 (258)
388 PF04837 MbeB_N: MbeB-like, N- 21.3 3.3E+02 0.0072 22.8 5.9 35 304-338 11-45 (52)
389 KOG2185 Predicted RNA-processi 21.2 2E+02 0.0042 33.0 5.9 62 358-424 415-476 (486)
390 cd07624 BAR_SNX7_30 The Bin/Am 21.1 8.3E+02 0.018 24.4 18.6 131 242-378 24-156 (200)
391 PF11172 DUF2959: Protein of u 21.1 8.7E+02 0.019 25.4 10.0 95 206-303 79-173 (201)
392 PF15188 CCDC-167: Coiled-coil 21.0 5.6E+02 0.012 23.4 7.7 51 308-374 17-68 (85)
393 TIGR02209 ftsL_broad cell divi 21.0 2.9E+02 0.0062 23.4 5.7 33 241-273 26-58 (85)
394 PF05700 BCAS2: Breast carcino 20.9 9E+02 0.019 24.7 10.9 39 239-277 143-181 (221)
395 PF13949 ALIX_LYPXL_bnd: ALIX 20.7 9.2E+02 0.02 24.7 18.4 77 286-365 197-275 (296)
396 TIGR00998 8a0101 efflux pump m 20.6 9.5E+02 0.021 24.8 16.1 23 241-263 82-104 (334)
397 COG5245 DYN1 Dynein, heavy cha 20.6 2.8E+02 0.006 37.3 7.5 118 311-430 2163-2345(3164)
398 PF09325 Vps5: Vps5 C terminal 20.5 8.2E+02 0.018 24.0 16.6 19 342-360 181-199 (236)
399 PF05791 Bacillus_HBL: Bacillu 20.2 8.6E+02 0.019 24.1 10.6 78 340-428 101-178 (184)
400 PF12126 DUF3583: Protein of u 20.1 1.2E+03 0.027 25.9 11.6 56 291-361 18-73 (324)
401 COG0711 AtpF F0F1-type ATP syn 20.1 8.1E+02 0.018 23.8 16.5 43 242-284 29-71 (161)
402 PRK10698 phage shock protein P 20.1 9.6E+02 0.021 24.6 18.7 56 313-371 80-135 (222)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.59 E-value=0.014 Score=67.55 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=60.7
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKR 310 (649)
Q Consensus 231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr 310 (649)
....-..=+-|..|+.|-++.+.++..|.+.++.++..|..|=|+|++|+..+-. +..+|..|||.|+
T Consensus 452 ~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~------------lEkQL~eErk~r~ 519 (697)
T PF09726_consen 452 TNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS------------LEKQLQEERKARK 519 (697)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh
Confidence 3333344467889999999999999999999999999999999999999776543 6678999999999
Q ss_pred HHHHH
Q 006350 311 QTERL 315 (649)
Q Consensus 311 r~E~l 315 (649)
..|.-
T Consensus 520 ~ee~~ 524 (697)
T PF09726_consen 520 EEEEK 524 (697)
T ss_pred HHHHh
Confidence 98763
No 2
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.20 E-value=0.14 Score=58.31 Aligned_cols=118 Identities=24% Similarity=0.334 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcc----cHHHHHHHHHhhHHHHHHH-HHhHHH
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESEKRAKDIME-QVCDELARGIGE----DRAEFEELKRESAKVKEEM-EKEREM 385 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE-~vCDELAkgI~e----dkaEVe~LKres~k~~eE~-eeER~M 385 (649)
++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+|| .+-.+++ ..+|...|.+..+..++++ +-.+++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344556778888877777777777776664222222 2332 2223333 3334444444444444444 345566
Q ss_pred HhhhHhhhHhhhh----------------hhhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 386 LQLADVLREERVQ----------------MKLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 386 LqmAEvWREERVQ----------------MKL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
.++++...|||++ +.|+|++-.|.|+.+.+-.++-|=|-+...++
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667766677664 55666666666666666666666666655544
No 3
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.12 E-value=0.42 Score=57.20 Aligned_cols=175 Identities=22% Similarity=0.299 Sum_probs=128.3
Q ss_pred cCccccccccccchhhh-------HHHHHHHHhhhc----cccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 006350 201 SGIKTRLKDVSSGLTAS-------KELLKVLNRIWG----IEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEI 269 (649)
Q Consensus 201 ~~~k~rl~e~~~~L~TS-------~ELlKVLnrIw~----leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~ei 269 (649)
.+.+..+++.---|.|- +.=|+-|.++.- +.|-.+--|--+.-|+.||.+||...++++.-+..++.+|
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~em 306 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEM 306 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677766666654 233444555542 3333344556677899999999999999998888888777
Q ss_pred HHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH--
Q 006350 270 EYL---------MKHFAEEKAAWRRKERERIREAISCIAEELEVEKK---------------LKRQTERLNKKLGKEL-- 323 (649)
Q Consensus 270 e~L---------~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk---------------~Rrr~E~lnrKL~~EL-- 323 (649)
.++ =|.+||||+--=--|-+-.+..|++|-.+||-=|- -=+++|.-|.||-.-|
T Consensus 307 ad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVr 386 (1243)
T KOG0971|consen 307 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVR 386 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 654 57888999988777888888888887777764222 1368899999987665
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 324 -----AETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 324 -----aE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
+..|.-..++.||||+-+-.-.-|+.+-.-|-+.|...+..|-.||..-+..
T Consensus 387 LRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 387 LRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777888999999888888888888899999988888888888765544
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.05 E-value=0.11 Score=66.17 Aligned_cols=130 Identities=23% Similarity=0.327 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA--EEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla--EEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
|+.|+.|+..-+.+|..|.+|++.....+.+|.-.+. +||+.--+|...|+...|+++...|+.|++.|..+|...+|
T Consensus 966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen 966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555554444445544443 67888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350 319 LGKELAETKACL---------------------SNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR 370 (649)
Q Consensus 319 L~~ELaE~Kss~---------------------~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 370 (649)
|.-||...+.+. .+....++.|.....-+...-.||...|.+.+++++.-+.
T Consensus 1046 le~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1046 LEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988884443333 2333344444555555566666666666666655555443
No 5
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.05 E-value=0.075 Score=60.31 Aligned_cols=187 Identities=25% Similarity=0.316 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA----------------EEKAAWRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla----------------EEK~awKsKE~eki~aai~slk~ELe~ 304 (649)
|..|+.|++.++.+..+.+++....+.+++..+..+. ||....=.+|-.+|...|+.++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556666666666666666666666555554443333 455555667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 305 EKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRA---KDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa---RellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
|.-+|..++.-..=|-.||.=++...++.+.|+-.-... -..=+..-+||+.-|.|.+++-+...+...+.+|. =-
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~-~Y 273 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES-WY 273 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH
Confidence 999999999999999999998888887766665332211 12346677899999999888888877665554321 01
Q ss_pred hHHHH--h--------hhHhhhHhhhhhhhh--h--hh-hhhhhhhHHHHHHHHHHHHHHhh
Q 006350 382 EREML--Q--------LADVLREERVQMKLS--E--AK-YHFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 382 ER~ML--q--------mAEvWREERVQMKL~--e--Ak-~~leeK~s~vdkL~~elE~FL~s 428 (649)
.+++= + ...--|||.+.|+-. + || ..||..|+.+++...+|+-=|..
T Consensus 274 ~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 274 KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 11111 1 123356666655432 2 22 25666777777777776665554
No 6
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.57 E-value=0.39 Score=56.11 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhhchhHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKE-------QCLNHSEIEYLMKHFA--EEKAAWRRKERERIREAISCIAEELEVEKKLKRQ 311 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E-------~~s~~~eie~L~Kqla--EEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr 311 (649)
|+.|++||.++|..=.||-.. .+..+-+|..|-+.-. +.|..-=.+.+++=+..|+.|..-|.+||+.|..
T Consensus 427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~ 506 (697)
T PF09726_consen 427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS 506 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888877665555544 2222333333222211 1222222333444556788888888888888888
Q ss_pred HHH
Q 006350 312 TER 314 (649)
Q Consensus 312 ~E~ 314 (649)
+|.
T Consensus 507 lEk 509 (697)
T PF09726_consen 507 LEK 509 (697)
T ss_pred HHH
Confidence 775
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.53 E-value=0.84 Score=53.68 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.9
Q ss_pred cCCCCCCchHHHHhh
Q 006350 29 GCSSSSSSSLAQRYR 43 (649)
Q Consensus 29 g~sssssss~~~~~r 43 (649)
|..|||=|.|+--..
T Consensus 30 G~NGsGKS~ildAi~ 44 (1164)
T TIGR02169 30 GPNGSGKSNIGDAIL 44 (1164)
T ss_pred CCCCCCHHHHHHHHH
Confidence 455555566555433
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.49 E-value=0.57 Score=48.04 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=79.9
Q ss_pred HhhhccccccCcchh-HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 006350 225 NRIWGIEEQHSSGIT-LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE--EKAAWRRKERERIREAISCIAEE 301 (649)
Q Consensus 225 nrIw~leeq~~s~~S-lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE--EK~awKsKE~eki~aai~slk~E 301 (649)
..|+.+.+.....++ +-..+..||..+|..|..+..|+....-+++.+...+.+ .|.....+.+..+..-|..++.+
T Consensus 32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455555666444444 667788889999999888888887777777766665554 33333455677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 302 LEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESE 340 (649)
Q Consensus 302 Le~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~E 340 (649)
|+.+-..|-.+|.--.-|-.||.-.+....+-+.+|...
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 999999999998888888888887777666666665543
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.47 E-value=0.71 Score=47.35 Aligned_cols=202 Identities=23% Similarity=0.311 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006350 218 KELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISC 297 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~s 297 (649)
.+|-+.|..+. -..+.-..-+..|+.|++..+.+..+..+.+.....+|..|-+.+.++.++ +..+...|+.
T Consensus 57 ~~lr~~id~~~---~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~ 128 (312)
T PF00038_consen 57 RELRRQIDDLS---KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQS 128 (312)
T ss_dssp HCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHhHHhhhhHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHH
Confidence 34445555443 122233344778888888888888888999999999999999998888776 5566677899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHH-HHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh------------
Q 006350 298 IAEELEVEKKLKRQ-TERLNKKLG-KELAET----KACLSNAMKELE--SEKRAKDIMEQVCDELARG------------ 357 (649)
Q Consensus 298 lk~ELe~ERk~Rrr-~E~lnrKL~-~ELaE~----Kss~~~alkelE--~ERKaRellE~vCDELAkg------------ 357 (649)
+++||+.=++.... ++.|-.++. .-..++ +.-+..+|+++- =+..+....+++=.-+...
T Consensus 129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence 99999987775544 444444441 111122 233444444432 1222222222222222222
Q ss_pred --hcccHHHHHHHHHhhHHHHHHHH-----HhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 006350 358 --IGEDRAEFEELKRESAKVKEEME-----KEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTK 429 (649)
Q Consensus 358 --I~edkaEVe~LKres~k~~eE~e-----eER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk 429 (649)
+...+.|+..++.....++.+++ .+..--+|.++ +.+.++.+.+-...+..+-+.+..|+.+|+.-+..-
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l--e~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL--EQRLDEEREEYQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH--HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 22233333333333333332221 12222223332 234456666666667777777777777776666543
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.45 E-value=0.28 Score=60.24 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 295 ISCIAEELEVEKKLKRQTERLNKKL---GKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 295 i~slk~ELe~ERk~Rrr~E~lnrKL---~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
+..+..+++.-.......+.--..| -.+|.+.+..+.+.++....-...-+-+...+.++...|.+.+.+++.|..+
T Consensus 838 l~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3333333333344333333333333 4557777888887777666655666666666777777777777777777776
Q ss_pred hHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 006350 372 SAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTK 429 (649)
Q Consensus 372 s~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk 429 (649)
..++..+.+.-+.-.+. .++..|+++. .|......+..|..+|+.|+...
T Consensus 918 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 918 LEKDQQEKEELISSKET----SNKKAQDKVN----DIKEKVKNIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 66665554433322222 2344554443 34444566667777777776654
No 11
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.41 E-value=0.71 Score=56.62 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=96.5
Q ss_pred HHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHH
Q 006350 220 LLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKH--FAEEKAAWRRKERERIREAISC 297 (649)
Q Consensus 220 LlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kq--laEEK~awKsKE~eki~aai~s 297 (649)
|++.+-.+-.++++..+ +.-..-+-.||+.+..+++-.+.|.+. .+..-++.. ..++|++-...+..++.+-|+.
T Consensus 443 l~~~~~~~~~~~~~~~~-~~~~~~~~keL~e~i~~lk~~~~el~~--~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQA-VAELEEMDKELEETIEKLKSEESELQR--EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred hhhHHHHhhhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444432 122233445677776666655555554 222222222 3456777777778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006350 298 IAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ 359 (649)
+++||++..+-..++-.-+.|+..+..++..+..-+.-+.+.++|-|...++.|..+-....
T Consensus 520 ~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 520 LEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 99999999999999988899999988888888888888999999999999999998766544
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.33 E-value=1.6 Score=51.49 Aligned_cols=17 Identities=6% Similarity=0.366 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006350 244 IRAEVDRARVQVDQLIK 260 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~ 260 (649)
|+.++...+.++..+..
T Consensus 292 l~~~~~~~~~~~~~~~~ 308 (1164)
T TIGR02169 292 VKEKIGELEAEIASLER 308 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.76 Score=56.25 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 252 RVQVDQLIKEQCLNHSEIEYLMKHFAEEK--AAWRRKER-ERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKA 328 (649)
Q Consensus 252 R~~I~eL~~E~~s~~~eie~L~KqlaEEK--~awKsKE~-eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Ks 328 (649)
++.|-+...+....+.++...-.++.-++ .+.|.+.+ ..|+..+..++...+..++-++.+|.-+.|+-..|.-+.+
T Consensus 333 ~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~ 412 (1293)
T KOG0996|consen 333 RAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTS 412 (1293)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554222 22333333 3478888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 329 CLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 329 s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
-++++.+++|+.++.+.-+|.+-...-..|.+...|++.|.....+...++++
T Consensus 413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e 465 (1293)
T KOG0996|consen 413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDE 465 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887777777777666666665555444444443
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.14 E-value=2.4 Score=48.61 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 218 KELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQC 263 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~ 263 (649)
.||++....+ +++...--.-|..|+.+|.+++....+|..+.+
T Consensus 153 eeL~~~~~~L---e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 153 EELLKENEQL---EEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454444332 444444445567777777777776666665543
No 15
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=1.3 Score=53.72 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
.-+..|..++..++.+|++...-.+....+|.-|=+.+.+.+..+.++-.| ...-|+.++..++..++-=++.|..-.+
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~e~ 819 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEYER 819 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444444444444444444444333332222 2223444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhh
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQ 398 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQ 398 (649)
|.-|..+++.++...-+.|+ -++.-|+.|..+|++.++.|.....+..++..|+.++.
T Consensus 820 l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k--------------- 877 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQK--------------- 877 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH---------------
Confidence 44444444433333332222 23334444444444444444444444444444444333
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 399 MKLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 399 MKL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
.-+-+=+..++.+..+.|.|+..+.
T Consensus 878 -------~k~~~~dt~i~~~~~~~e~~~~e~~ 902 (1174)
T KOG0933|consen 878 -------AKQRDIDTEISGLLTSQEKCLSEKS 902 (1174)
T ss_pred -------HHHHhhhHHHhhhhhHHHHHHHHhh
Confidence 3333334556666666666666554
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=95.55 E-value=3.8 Score=47.91 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhcccHHHHHHHHHhhHHHHHH
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELAR-------GIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk-------gI~edkaEVe~LKres~k~~eE 378 (649)
++.-+..|-.++++....+..+-..++..+..-.-+++-.+++.. .+.+++..+..+..+...++++
T Consensus 354 le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~ 427 (880)
T PRK02224 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333444444444444455555555555555555555555533 3345556666665555555443
No 17
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.39 E-value=4.4 Score=46.63 Aligned_cols=179 Identities=22% Similarity=0.236 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKER------ER---IREAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~------ek---i~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
.+||-.||.-|.+-.+++-....+|..|--++.+=|.-|-.+++ ++ ...+|-.+.+|+.-=++..+.+|.-
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45555555555555555544444444444444444444443322 22 3466778888998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cccHHHHHHHHHhhHHHH-----HHH-------
Q 006350 316 NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGI----GEDRAEFEELKRESAKVK-----EEM------- 379 (649)
Q Consensus 316 nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI----~edkaEVe~LKres~k~~-----eE~------- 379 (649)
...|-+|..-....+..+.++|+.|.-.|.-++.-|..|-.+| ..++.||+++++...... ++.
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~A 250 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALA 250 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHH
Confidence 9999999999999999999999999999988888888777765 466788887776654332 111
Q ss_pred ------HHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 006350 380 ------EKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEA 424 (649)
Q Consensus 380 ------eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~ 424 (649)
+.|. +++....=.|.+-+-|+.+++..-+-.+...+..+.||..
T Consensus 251 i~eiRaqye~-~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~ 300 (546)
T KOG0977|consen 251 IREIRAQYEA-ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRR 300 (546)
T ss_pred HHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 1121 2233333334555666667776666666666666666643
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.25 E-value=6.5 Score=48.28 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 219 ELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 219 ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
+|..+..+|=.+..+-.....-+..++.++..+...+.++....+..+.+++.+-++++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444455544455555555666777777777777777777766666666666666665
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.11 E-value=5.5 Score=48.86 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=14.9
Q ss_pred hHhhhH-hhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 006350 389 ADVLRE-ERVQMKLSEAKYHFEEKNAAVERLRNEL 422 (649)
Q Consensus 389 AEvWRE-ERVQMKL~eAk~~leeK~s~vdkL~~el 422 (649)
.+.|++ .+.|.++.+++..+......++.|....
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 497 (1163)
T COG1196 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQ 497 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443 2344444444444444444444444433
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=95.09 E-value=4.3 Score=47.47 Aligned_cols=32 Identities=3% Similarity=0.143 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYL 272 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L 272 (649)
+..++.+|+..+.++.++.++....+.+++.+
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.02 E-value=2.9 Score=45.98 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccc
Q 006350 323 LAETKACLSNAMKELESEKRAKDIMEQ--VCDELARGIGED 361 (649)
Q Consensus 323 LaE~Kss~~~alkelE~ERKaRellE~--vCDELAkgI~ed 361 (649)
|.+++..+..+-.+++.-.+....++. .|.---+.+.+.
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~ 297 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG 297 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc
Confidence 444555556666666666666666644 554444444433
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.87 E-value=6.8 Score=50.83 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEE--KAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNK 317 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEE--K~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnr 317 (649)
.++.|+..++.-..++.+|..-.....+++..|-+++.|. +.+--+|...-+..-|+.++.+|+.|-|.+--++...+
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666777788899999888754 45566677777888899999999999998888888888
Q ss_pred HHHHHHHHH
Q 006350 318 KLGKELAET 326 (649)
Q Consensus 318 KL~~ELaE~ 326 (649)
+|-.|+...
T Consensus 1326 ~l~~e~~~l 1334 (1930)
T KOG0161|consen 1326 QLEHELDLL 1334 (1930)
T ss_pred HHHHHHHHH
Confidence 877775543
No 23
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.73 E-value=9.2 Score=43.29 Aligned_cols=132 Identities=28% Similarity=0.364 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHh
Q 006350 287 ERERIREAISCIAEELEVEKKLKRQTERLNKKLG---KELAETKACLSNAMKELE----SEKRAKDIMEQV---CDELAR 356 (649)
Q Consensus 287 E~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~---~ELaE~Kss~~~alkelE----~ERKaRellE~v---CDELAk 356 (649)
|-..++..+.+|+.||+.++.-=.+ +..++. -.....+.-+.++..+|+ .+.+++..+.++ -+++..
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~---lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~ 379 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELER---LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSS 379 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHH
Confidence 4455666677777777666532222 222211 111222222222333332 233344433332 233444
Q ss_pred hhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 006350 357 GIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTK 429 (649)
Q Consensus 357 gI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk 429 (649)
+..+-+.+.+.++.+..+++.|++.=+..+.-++ +||..|.-.++.-.+.-.....+|.+.-...
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4555566666666666677777777777776665 5666666666666666677777777755544
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=94.73 E-value=11 Score=43.96 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHhhhcccc
Q 006350 214 LTASKELLKVLNRIWGIEE 232 (649)
Q Consensus 214 L~TS~ELlKVLnrIw~lee 232 (649)
+++.++..++|.+|-+++.
T Consensus 141 ~~~~~~r~~~~~~~~~~~~ 159 (880)
T PRK03918 141 LESDESREKVVRQILGLDD 159 (880)
T ss_pred hcCcHHHHHHHHHHhCCHH
Confidence 4567888889998876654
No 25
>PRK11637 AmiB activator; Provisional
Probab=94.26 E-value=6 Score=43.10 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHF 276 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kql 276 (649)
|..|..+|..+...|.++.++......+|+.+-+++
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443333
No 26
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.22 E-value=2.8 Score=49.99 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=65.8
Q ss_pred ccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHH
Q 006350 207 LKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRK 286 (649)
Q Consensus 207 l~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsK 286 (649)
++-+.--|+.+.+..+||.++. +...--++-+..+--+||.+=..|+--.--+.....+++.+++...+=-..--+|
T Consensus 839 ~~K~~~l~kns~k~~ei~s~lk---e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk 915 (1259)
T KOG0163|consen 839 IRKINALLKNSLKTIEILSRLK---EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSK 915 (1259)
T ss_pred HHHHHHHHHhhHHHHHHHHHHh---cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445556788899999999985 3555556778888888998888888544444555566777777665443333345
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHH
Q 006350 287 ERERIRE--AISCIAEELEVEKKLK 309 (649)
Q Consensus 287 E~eki~a--ai~slk~ELe~ERk~R 309 (649)
|+..|.. .++.+.+++|.||+-|
T Consensus 916 ~~q~~~e~er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 916 EQQQIEELERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5544443 3566777778887654
No 27
>PRK09039 hypothetical protein; Validated
Probab=94.09 E-value=3.4 Score=44.42 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
|+.++.||+...++|.+|-.--..+ ......+...|..|+.+|+.=++.|.++|.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le-------------------~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLE-------------------RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7788899999999988743222222 223444555566666666665666666666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhh
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMK 400 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMK 400 (649)
....+++..+...-.+|..++. +-.|--..|.-.+++|++||.... ++|.-
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~-------~~se~~~~V~~L~~qI~aLr~Qla----------------------~le~~ 159 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQ-------VSARALAQVELLNQQIAALRRQLA----------------------ALEAA 159 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHH----------------------HHHHH
Confidence 4344444333333333333222 122222333333444444444332 23445
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 006350 401 LSEAKYHFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 401 L~eAk~~leeK~s~vdkL~~elE~FL~s 428 (649)
|.+++....+....++.|..+|+.=|..
T Consensus 160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 160 LDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666555543
No 28
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=94.09 E-value=2.2 Score=43.18 Aligned_cols=152 Identities=23% Similarity=0.353 Sum_probs=77.4
Q ss_pred hHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Q 006350 217 SKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWR-RKERERIREAI 295 (649)
Q Consensus 217 S~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awK-sKE~eki~aai 295 (649)
-+|||+.|+=+= +|-++-+ -+|.+|++| +++.++.|.+=-...+.+-+.-|.-|-.+-. ..+.+ ++.
T Consensus 12 k~dLL~LLsilE--GELqARD-~vI~~Lkae------r~~~~~~e~~Yg~~~~~dp~~ALqRD~~~~~~~~~~~---~v~ 79 (192)
T PF09727_consen 12 KDDLLKLLSILE--GELQARD-VVIAMLKAE------RKKVFLLEARYGFYNPNDPFLALQRDSEAAGGEKEEE---DVY 79 (192)
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHHHHHHh------hhhHHHHHHHHcCCCcCcHHHHHHhHHHhcCCCCccC---cch
Confidence 368999888763 5556543 357788776 2333333332211222222222222222211 01111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhcccHHH
Q 006350 296 SCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDI-----------MEQVCDELARGIGEDRAE 364 (649)
Q Consensus 296 ~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRel-----------lE~vCDELAkgI~edkaE 364 (649)
..=-.+|+ ++=.+--..++|+..-|+.+...-.+.+.|||.||+...- ||+-.+.|-+.|.-.++.
T Consensus 80 ~~pl~~Le---~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~ 156 (192)
T PF09727_consen 80 ENPLAELE---KLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQ 156 (192)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 1222333467788888999999999999999999998764 444444444444444444
Q ss_pred HHHHHHhhHHHHHHHHHhH
Q 006350 365 FEELKRESAKVKEEMEKER 383 (649)
Q Consensus 365 Ve~LKres~k~~eE~eeER 383 (649)
+..+-++..|....+++|+
T Consensus 157 ~~~~EkE~~K~~~~l~eE~ 175 (192)
T PF09727_consen 157 QKKLEKEHKKLVSQLEEER 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.37 E-value=19 Score=44.67 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=47.4
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006350 231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIRE 293 (649)
Q Consensus 231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~a 293 (649)
+++-...-..|..++.++.+++..++......+..+.+.+.+-.++.+.+...+.+-+..+.+
T Consensus 627 e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 689 (1201)
T PF12128_consen 627 EKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNE 689 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333446688999999999999999888888888888888888887777777666655553
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.32 E-value=8.8 Score=43.44 Aligned_cols=139 Identities=17% Similarity=0.275 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR-KER-ERIREAISCIAEELEVEKKLKRQTERLN 316 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs-KE~-eki~aai~slk~ELe~ERk~Rrr~E~ln 316 (649)
+.|..++.||+.+...+.....|-...+..++.|...|...|..--. +++ ......|.+|..||. ++|..++.+.
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~---~~r~eLea~~ 357 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELN---KTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH---HHHHHHHHHH
Confidence 45889999999999999999999999999999998888877654322 222 234556888888887 6777777665
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHH
Q 006350 317 KKLG---KELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEME 380 (649)
Q Consensus 317 rKL~---~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~e 380 (649)
..-. ....++-..+.++..|.|.=++....+..--..+-.+|...++.+..+.....-+..|++
T Consensus 358 ~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 358 AEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 345555666666666666555444444443344444555566666665555555544443
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.30 E-value=19 Score=44.39 Aligned_cols=138 Identities=18% Similarity=0.284 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhch---hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNH---SEIEYLMKHFAEEKAAWRRKERERIREAISCIAEE-------LEVEKKLKR 310 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~---~eie~L~KqlaEEK~awKsKE~eki~aai~slk~E-------Le~ERk~Rr 310 (649)
+.+.+.||++.-.+|+.|+.-.+..+ .+++-.+..++=-+--...-+.-++-+.++.+.++ +...+++=+
T Consensus 686 ~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k 765 (1174)
T KOG0933|consen 686 LRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALK 765 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666655444332 23444444444322222233344444444444433 333333333
Q ss_pred HHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhh
Q 006350 311 QTERLNKK------------------LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRES 372 (649)
Q Consensus 311 r~E~lnrK------------------L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 372 (649)
..+.--.+ |.+||..+|.-+...-+++|+-....+.|.--|++|-++|..++...+.+....
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 445555666666666666676677777777778888888888887777777665
Q ss_pred HHHHHH
Q 006350 373 AKVKEE 378 (649)
Q Consensus 373 ~k~~eE 378 (649)
..+..|
T Consensus 846 ~~l~~e 851 (1174)
T KOG0933|consen 846 SSLKSE 851 (1174)
T ss_pred HHHHHH
Confidence 554433
No 32
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=12 Score=45.92 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=75.1
Q ss_pred HHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHH------HH
Q 006350 223 VLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREA------IS 296 (649)
Q Consensus 223 VLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aa------i~ 296 (649)
+.+.+--|+++-.+..=-=.-+..+|+.++..+..|..+. .+|++.++-+-+||..-+.++.+-++.- |.
T Consensus 235 ~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i----~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 235 INGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEI----KELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3333333344443322222345556777888887777766 4677777777788877777666555544 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 297 CIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKEL 337 (649)
Q Consensus 297 slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkel 337 (649)
+++++++.++.-|......+.++..++.+-+--+++.+..|
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999998877777666666554444
No 33
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=93.12 E-value=18 Score=40.77 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=30.3
Q ss_pred ccccccchhhhHHHHHHHHhhhcc-ccccC---cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 207 LKDVSSGLTASKELLKVLNRIWGI-EEQHS---SGITLISAIRAEVDRARVQVDQLIKEQ 262 (649)
Q Consensus 207 l~e~~~~L~TS~ELlKVLnrIw~l-eeq~~---s~~Slv~aLk~EL~~AR~~I~eL~~E~ 262 (649)
+.+....-..-.+|..++|.+... .+... ..-++|...+.++++...+|.+|..+.
T Consensus 215 ~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~ 274 (582)
T PF09731_consen 215 YKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEE 274 (582)
T ss_pred hhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333338999999998732 22222 233566666666666655555554433
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.88 E-value=30 Score=42.53 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006350 280 KAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 280 K~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ 359 (649)
-..||+| |-+.+-+|+.||-++|+--+.+-....++..||+++--++.=+. =-+++.|+=.|-|-.++.
T Consensus 267 lqEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaT-------ldKEmAEERaesLQ~eve 335 (1243)
T KOG0971|consen 267 LQEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMAT-------LDKEMAEERAESLQQEVE 335 (1243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHH
Confidence 3457665 44556689999999999999999999999999999876654433 223344444455555555
Q ss_pred ccHHHHHHHHHhhHHHHHHHH
Q 006350 360 EDRAEFEELKRESAKVKEEME 380 (649)
Q Consensus 360 edkaEVe~LKres~k~~eE~e 380 (649)
-.+..|++|--+.+=++.|++
T Consensus 336 ~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444
No 35
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=92.49 E-value=11 Score=36.71 Aligned_cols=66 Identities=24% Similarity=0.453 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHH
Q 006350 307 KLKRQTERLNKKLGKELAETKACLSN-------AMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAK 374 (649)
Q Consensus 307 k~Rrr~E~lnrKL~~ELaE~Kss~~~-------alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 374 (649)
++++.++.|+.+|..|+..++..++- -+++.......+ +.++-.++..+|.+.+.++|.+|-+..+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888887777765543 233333333333 6788888888999999999988876554
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.45 E-value=19 Score=43.60 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q 006350 251 ARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQ-----------TERLNKKL 319 (649)
Q Consensus 251 AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr-----------~E~lnrKL 319 (649)
....|+|+--..+..-++|+.-|+++.--. +.=.+|.--....|..++.||+.+++.|-+ ++.-|.||
T Consensus 250 ~~s~i~E~d~~lq~sak~ieE~m~qlk~kn-s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkl 328 (1265)
T KOG0976|consen 250 TCSMIEEQDMDLQASAKEIEEKMRQLKAKN-SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKL 328 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543211 111233334455677899999999987644 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHhhH
Q 006350 320 GKELAETKACLSNAMKELESEKRAKDIMEQVCDEL---ARGIGEDRAEFEELKRESA 373 (649)
Q Consensus 320 ~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL---AkgI~edkaEVe~LKres~ 373 (649)
.++.+++..++..+...+|-=-.-+.=||+--|++ |+-|.+.+.-|+++++...
T Consensus 329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~ 385 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL 385 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999988887766544433222222233222222 3455555555555555433
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.40 E-value=9.7 Score=45.57 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=31.4
Q ss_pred HhhhHhhhhhh--hhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 006350 390 DVLREERVQMK--LSEAKYHFEEKNAAVERLRNELEAYLG 427 (649)
Q Consensus 390 EvWREERVQMK--L~eAk~~leeK~s~vdkL~~elE~FL~ 427 (649)
++-+-....|| +..++..|..|.+.+..|..+|++-..
T Consensus 276 e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~ 315 (775)
T PF10174_consen 276 EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE 315 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777888 999999999999999999999886543
No 38
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.20 E-value=15 Score=37.43 Aligned_cols=70 Identities=29% Similarity=0.482 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 285 RKERERIREAISCIAEELEVEKKLKRQ-TERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELAR 356 (649)
Q Consensus 285 sKE~eki~aai~slk~ELe~ERk~Rrr-~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 356 (649)
+.--+.+...|..|...+..|+.-|.. .|.++..|+++|.+...+|..-.. .++.+...|+..|++.+.+
T Consensus 91 ~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~~ 161 (247)
T PF06705_consen 91 QSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 334455566678888889999987776 888999999999987776655222 2222333555555555443
No 39
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.17 E-value=11 Score=46.88 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 285 RKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELA 324 (649)
Q Consensus 285 sKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELa 324 (649)
.+.+..+.++..+++.|.++++|+|.+.+-+++.|--|+.
T Consensus 542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 4556677888899999999999999999999998877776
No 40
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.11 E-value=4.2 Score=47.25 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=81.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 234 HSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTE 313 (649)
Q Consensus 234 ~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 313 (649)
-+.-.+.|..+-.||+.|+.+|..|++|. ++|.-|++...-.-+...-+-|.+...- |.. .+
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~~~~~~----L~~-------kd 291 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDIDALGSV----LNQ-------KD 291 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchHHHHHH----HhH-------HH
Confidence 33556788899999999999999998765 5666666655444433322233333222 222 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccHHHHHHHHHhh--HHHHHHHHHhHHHHh
Q 006350 314 RLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELA---RGIGEDRAEFEELKRES--AKVKEEMEKEREMLQ 387 (649)
Q Consensus 314 ~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELA---kgI~edkaEVe~LKres--~k~~eE~eeER~MLq 387 (649)
++|.+|..++...++|+.+ .+|..|.++. +++..+..++++|+.+. ...++|+..|-.+|+
T Consensus 292 ~~i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 292 SEIAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 8888888888877776654 3444554443 34555666777777763 467788999999887
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.85 E-value=43 Score=41.97 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
..|..++...+..|+++..+......+++.+...+.+-+.....++ +++...++.++..+
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 950 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN-KKAQDKVNDIKEKV 950 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433332222222 33444444444444
No 42
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.70 E-value=17 Score=43.09 Aligned_cols=205 Identities=20% Similarity=0.239 Sum_probs=124.6
Q ss_pred ccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH---------
Q 006350 207 LKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA--------- 277 (649)
Q Consensus 207 l~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla--------- 277 (649)
+++--+++..+.-++.-+++.|..+.++++-+ --+..-|-+-...++.+.+.+.....++.+|++.+-
T Consensus 348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~i---te~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl 424 (716)
T KOG4593|consen 348 LKNKNSTVTSPARGLERARQLLKEELKQVAGI---TEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRL 424 (716)
T ss_pred hccccccccCcccchHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 55555666667777788888887777776433 333444445555677778888888888888877664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 278 EEKAAWRRKERERIREAISCIAE----------ELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIM 347 (649)
Q Consensus 278 EEK~awKsKE~eki~aai~slk~----------ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRell 347 (649)
..+.---.|+.+.+++.|+.+.. ++..+=..+ ..-+.||..++.+.++.+...-+++...|+.++++
T Consensus 425 ~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~---k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~ 501 (716)
T KOG4593|consen 425 AEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQ---KKRLEKLEHELKDLQSQLSSREQSLLFQREESELL 501 (716)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22333446678888888776542 122221111 12345789999999999999999999999999887
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHh-hhhhhhhhh-hhhhhhhhHHHHHHHHHHHHH
Q 006350 348 EQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREE-RVQMKLSEA-KYHFEEKNAAVERLRNELEAY 425 (649)
Q Consensus 348 E~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREE-RVQMKL~eA-k~~leeK~s~vdkL~~elE~F 425 (649)
-+ +|.+|..|+..|..++.+++ +.-|+..||=-=.=-.= =|||..-=+ +... .|-..+..|++|+++.
T Consensus 502 ~e-------~i~~~~ke~~~Le~En~rLr--~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~-~~k~~~e~LqaE~~~l 571 (716)
T KOG4593|consen 502 RE-------KIEQYLKELELLEEENDRLR--AQLERRLLQGDYEENITRVLHMSTNPTSKARQ-IKKNRLEELQAELERL 571 (716)
T ss_pred hh-------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhhccceeeecCCchHHHHH-HHHHHHHHHHHHHHHH
Confidence 44 45556666667777776665 22233332210000000 123333333 3333 3335677788888776
Q ss_pred Hh
Q 006350 426 LG 427 (649)
Q Consensus 426 L~ 427 (649)
..
T Consensus 572 k~ 573 (716)
T KOG4593|consen 572 KE 573 (716)
T ss_pred HH
Confidence 55
No 43
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.65 E-value=22 Score=44.64 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 344 KDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 344 RellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
-...|....-.++.|++.+.-|++||++..+.
T Consensus 1607 t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1607 TAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444556778888888888776543
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=18 Score=43.65 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 323 LAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 323 LaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
|.+|+.-+-++..++|.-++.|+++-.--++|-..|.|+.+.+-.|-.|
T Consensus 460 l~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 460 LQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred hhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444555555555555555555555555555555555544444433
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.22 E-value=28 Score=38.57 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYL 272 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L 272 (649)
+..|+.|++.....+..|..+....+.+|..|
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444
No 46
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=91.21 E-value=6.4 Score=36.67 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcccccc------CcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 006350 218 KELLKVLNRIWGIEEQH------SSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEY 271 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~------~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~ 271 (649)
+-|+|.+..+-.+.+.. ...-.+.-.|..+|+.+...+.++..=..+++.++++
T Consensus 19 ~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~ 78 (139)
T PF05615_consen 19 KRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKREREN 78 (139)
T ss_pred HHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555432 2344567777788888888877776666665554443
No 47
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.99 E-value=41 Score=41.03 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHhhH---HH
Q 006350 310 RQTERLNKKLGKELAETKACLSNAMKELESEKRA-----------KDIMEQVCDELARGIGEDRAEFEELKRESA---KV 375 (649)
Q Consensus 310 rr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa-----------RellE~vCDELAkgI~edkaEVe~LKres~---k~ 375 (649)
+.++.-|..|++||++-.--++-.-.+|+.++++ +..|+.---+|.++|.+.+.++-+-|++.+ +.
T Consensus 273 ~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk 352 (1265)
T KOG0976|consen 273 RQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDK 352 (1265)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4577888999999998666666555667777654 567788888899999888888888777754 44
Q ss_pred HHHHHHhHHHHhh
Q 006350 376 KEEMEKEREMLQL 388 (649)
Q Consensus 376 ~eE~eeER~MLqm 388 (649)
+.|+|++|-|+-|
T Consensus 353 ~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 353 LNELEKKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 5688888888754
No 48
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.90 E-value=15 Score=35.12 Aligned_cols=93 Identities=29% Similarity=0.408 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQ-------VDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTE 313 (649)
Q Consensus 241 v~aLk~EL~~AR~~-------I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 313 (649)
+.+|++|.+.|..+ |++|..+.-...++|..|-+++.- =-.+-+++...|..++.-|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~-----lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQ-----LEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 45677777766555 555555555556667777655431 112578899999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Q 006350 314 RLNKKLG---KELAETKACLSNAMKELE 338 (649)
Q Consensus 314 ~lnrKL~---~ELaE~Kss~~~alkelE 338 (649)
.||+|+. .||..+...+.-+...|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999964 455555554444444443
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.58 E-value=54 Score=40.85 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMK---HFAEEKAAWRRKERERIREAISCIAEELEVEK 306 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~K---qlaEEK~awKsKE~eki~aai~slk~ELe~ER 306 (649)
++...++..++..+.++..+.+..+.++..|.. ++..+...++.....++...+..+..+|..-.
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555544432 23344445555566666666666666665443
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.51 E-value=59 Score=41.16 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhh
Q 006350 327 KACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKY 406 (649)
Q Consensus 327 Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~ 406 (649)
|.++..|-+.++.-.+.-++.+++-..=+.|...-++..+.|+.+..++..+.. ++|=.|-+ ++.+..+-.-
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~--~kl~~l~d------Le~~y~~~~~ 1724 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN--EKLDRLKD------LELEYLRNEQ 1724 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------HHHHHhhhhH
Confidence 334444444555444444555555555555555555556666666666553321 11111111 2334445555
Q ss_pred hhhhhhHHHHHHHHHHHHHHhh
Q 006350 407 HFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 407 ~leeK~s~vdkL~~elE~FL~s 428 (649)
.|+.|-++|..|..+|+..|..
T Consensus 1725 ~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 6788888888888888888765
No 51
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.23 E-value=29 Score=43.46 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHH
Q 006350 320 GKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEM 379 (649)
Q Consensus 320 ~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ 379 (649)
--||...+.....+++.+|.-+.+=..+..--.|..-+|.+.+.++..+|.+...+..++
T Consensus 506 esel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 506 ESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 345666666666777777777777777777777777788888888888888766665553
No 52
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.69 E-value=29 Score=36.42 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=13.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Q 006350 400 KLSEAKYHFEEKNAAVERLRNELEA 424 (649)
Q Consensus 400 KL~eAk~~leeK~s~vdkL~~elE~ 424 (649)
++.+++..+.+-...++.+...|+.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555666555543
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.91 E-value=16 Score=45.15 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=87.6
Q ss_pred HHHHHHHHhhhccccccC------cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 006350 218 KELLKVLNRIWGIEEQHS------SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERI 291 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~~------s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki 291 (649)
++.-+.++.+- .+..+ .....+.+++.|.......|++-...-+..+.+++.+-|++++.+..- ...+
T Consensus 319 teiea~i~~~~--~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~----~~~~ 392 (1074)
T KOG0250|consen 319 TEIEAKIGELK--DEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT----NNEL 392 (1074)
T ss_pred hHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh
Confidence 45666666664 33322 222334444444444444444444444555556666666666543322 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 292 REAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 292 ~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
..-+..+.++++.=.+-...+|.++..|..|+-+++ .++..+...+.-++..-.-|.+-|..+..++..|+.-
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~-------~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVK-------EKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222333333333333334456666666666666544 4556677777778888888999999999999998863
Q ss_pred -hHHHHHHHHHhHHHHhhhHhhhH
Q 006350 372 -SAKVKEEMEKEREMLQLADVLRE 394 (649)
Q Consensus 372 -s~k~~eE~eeER~MLqmAEvWRE 394 (649)
..++ .-+-..|-++=..-..
T Consensus 466 k~dkv---s~FG~~m~~lL~~I~r 486 (1074)
T KOG0250|consen 466 KTDKV---SAFGPNMPQLLRAIER 486 (1074)
T ss_pred ccchh---hhcchhhHHHHHHHHH
Confidence 3333 2334555555444433
No 54
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.87 E-value=19 Score=42.56 Aligned_cols=137 Identities=20% Similarity=0.285 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 006350 286 KERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365 (649)
Q Consensus 286 KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 365 (649)
|+.++...-+-.+..+|+..+...-+.+..=.. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 445555555566666666555444433222111 2233333333333455556666677778888888899999999
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhh-hhhhhhhhhhhhhhh---HHHHHHHHHHHHHHhh
Q 006350 366 EELKRESAKVKEEMEKEREMLQLADVLREERV-QMKLSEAKYHFEEKN---AAVERLRNELEAYLGT 428 (649)
Q Consensus 366 e~LKres~k~~eE~eeER~MLqmAEvWREERV-QMKL~eAk~~leeK~---s~vdkL~~elE~FL~s 428 (649)
..|+++...+.+++.+-..+ +.+.|..-+. |-.|.++...|-+|+ .+--+|.++|..+...
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTRE--VQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99998887776554443333 4577887777 456778888888898 7788888888876544
No 55
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.41 E-value=30 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 006350 290 RIREAISCIAEELEVE 305 (649)
Q Consensus 290 ki~aai~slk~ELe~E 305 (649)
.++..|+.++.+++..
T Consensus 74 ~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 74 RLRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 56
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=88.07 E-value=14 Score=41.12 Aligned_cols=160 Identities=27% Similarity=0.336 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhch--------------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNH--------------SEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~--------------~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
.+++.|+.. +-|--|+.|+.+++..- +|-+.|-.||.=|+...| |..-+-.-|--.|+
T Consensus 106 ~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~k-----K~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 106 ASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKK-----KAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 355555432 34556777777776532 233344444443433322 23333344566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhcccHHHHHHHH
Q 006350 304 VEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDEL--------------ARGIGEDRAEFEELK 369 (649)
Q Consensus 304 ~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL--------------AkgI~edkaEVe~LK 369 (649)
.||+-- |.+.--|.- |-|.++.+ --|.-.|+-+||=++-.+- -+|+ ..++.|
T Consensus 178 eEk~RH---eqis~mLil---EcKka~~K---aaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqv---- 243 (561)
T KOG1103|consen 178 EEKKRH---EQISLMLIL---ECKKALLK---AAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQV---- 243 (561)
T ss_pred HHHHHH---HHHHHHHHH---HHHHHHHH---HHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHH----
Confidence 887643 444444543 33333333 3444556666665443332 2221 123333
Q ss_pred HhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 370 RESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 370 res~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
+|..+|++.||..|+ |+.=|+|.-|--| -+-+.-|.+...++|+-+.--+
T Consensus 244 ---ek~i~EfdiEre~LR-Ael~ree~r~K~l-------KeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 244 ---EKLIEEFDIEREFLR-AELEREEKRQKML-------KEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred ---HHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhhcC
Confidence 346678889999886 7788888777433 3345556666777777665533
No 57
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.00 E-value=58 Score=37.69 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=12.6
Q ss_pred cCCCCCCchHHHHhhhcceEEEeccc
Q 006350 29 GCSSSSSSSLAQRYRFKRAILVGKRG 54 (649)
Q Consensus 29 g~sssssss~~~~~r~Kr~iLvgKRg 54 (649)
|.++++=|+++.-++| +|-|++.
T Consensus 35 G~Ng~GKttll~ai~~---~LyG~~~ 57 (650)
T TIGR03185 35 GLNGAGKTTLLDAIQL---ALYGKRA 57 (650)
T ss_pred CCCCCCHHHHHHHHHH---HhcCccc
Confidence 4455555666655543 5556654
No 58
>PRK11637 AmiB activator; Provisional
Probab=87.91 E-value=46 Score=36.44 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLN 265 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~ 265 (649)
.++.+|+..+.+|+++.++....
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQ 66 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444444433
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.41 E-value=60 Score=37.19 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 276 FAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRA 343 (649)
Q Consensus 276 laEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa 343 (649)
|..=.+.--...-+.|...|+.|-+-|+.|-..++.++....+|..-|..++........+++.=+..
T Consensus 272 l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 272 LEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333444556777777888888888888888777777777777777777776666666665554
No 60
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.21 E-value=25 Score=37.63 Aligned_cols=71 Identities=27% Similarity=0.348 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhh
Q 006350 333 AMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKN 412 (649)
Q Consensus 333 alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~ 412 (649)
+..|+-+---+|.-||.+|.||-+.....+.|...+-+ +.+.-|.-| .+..|.-|.|....+++..
T Consensus 62 l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~-------eee~kR~el-------~~kFq~~L~dIq~~~ee~~ 127 (309)
T PF09728_consen 62 LQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR-------EEEEKRKEL-------SEKFQATLKDIQAQMEEQS 127 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Confidence 34455556678899999999999998765555544433 333333332 3455666666666666555
Q ss_pred HHHHH
Q 006350 413 AAVER 417 (649)
Q Consensus 413 s~vdk 417 (649)
..-.+
T Consensus 128 ~~~~k 132 (309)
T PF09728_consen 128 ERNIK 132 (309)
T ss_pred chhHH
Confidence 43333
No 61
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.13 E-value=33 Score=40.77 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 280 KAAWRRKERERIREAISCIAEELE--------VEKKLKRQTERLNKKLGKELAETKACLSNAMKELES 339 (649)
Q Consensus 280 K~awKsKE~eki~aai~slk~ELe--------~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ 339 (649)
|...=...|+.+...++.|..-+. .||+.++.++.++.+| -..+.++.++.+.+++
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l----~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL----QDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 444334445555554444444433 3888888888887774 3355566665555544
No 62
>PRK03918 chromosome segregation protein; Provisional
Probab=86.61 E-value=74 Score=37.42 Aligned_cols=7 Identities=29% Similarity=1.127 Sum_probs=3.2
Q ss_pred EEEeccc
Q 006350 48 ILVGKRG 54 (649)
Q Consensus 48 iLvgKRg 54 (649)
++||..|
T Consensus 27 ~i~G~nG 33 (880)
T PRK03918 27 LIIGQNG 33 (880)
T ss_pred EEEcCCC
Confidence 4444444
No 63
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.44 E-value=25 Score=34.36 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRAR-VQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL-EVEKKLKRQTERLNK 317 (649)
Q Consensus 240 lv~aLk~EL~~AR-~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL-e~ERk~Rrr~E~lnr 317 (649)
.+..|+.|+...+ .++..|..+...-+++++.|-.+|.+|-..-+ .-++--+..-|.++ +..+....++..+|.
T Consensus 59 ~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~----a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ 134 (177)
T PF07798_consen 59 AIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR----AEVKLDLNLEKGRIREEQAKQELKIQELNN 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443 44555555655666666666665555521111 11111111122222 122345567888999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006350 318 KLGKELAETKACLSNAMKE 336 (649)
Q Consensus 318 KL~~ELaE~Kss~~~alke 336 (649)
|+..|++.+++.+..+.-+
T Consensus 135 ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888766654433
No 64
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.95 E-value=44 Score=34.26 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 319 LGKELAETKACLSNAMKELESEKRA 343 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKa 343 (649)
+..+|..+..||+...+-||+-|..
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7778889999999999999876544
No 65
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.80 E-value=41 Score=33.78 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 006350 292 REAISCIAEELE 303 (649)
Q Consensus 292 ~aai~slk~ELe 303 (649)
+..+..++.+++
T Consensus 69 ~~r~~~l~~~i~ 80 (302)
T PF10186_consen 69 RERLERLRERIE 80 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 66
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.78 E-value=5.8 Score=42.30 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHH-HHhHHHHhhhHh
Q 006350 334 MKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEM-EKEREMLQLADV 391 (649)
Q Consensus 334 lkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~-eeER~MLqmAEv 391 (649)
.+|-+...+.=+-||+-+++|.++|.+.+.|...|.++-.+.|.+. ...+.++++.+.
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455677788888888888888888877666555442 344444444443
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.58 E-value=74 Score=36.48 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQL-----IKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTE 313 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL-----~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 313 (649)
+-|..|+.+|..+...|..| ...-......|+.|-..|.-|..|.+.=++. +..+.+ .-.|++
T Consensus 256 ~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~-----~~~l~~-------~l~~~~ 323 (569)
T PRK04778 256 KEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKN-----SDTLPD-------FLEHAK 323 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHH-------HHHHHH
Confidence 55666777776655555444 3334445567888888888887776553321 111222 223455
Q ss_pred HHHHHHHHHHHHHHHH
Q 006350 314 RLNKKLGKELAETKAC 329 (649)
Q Consensus 314 ~lnrKL~~ELaE~Kss 329 (649)
.-|..|..||..++.+
T Consensus 324 e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 324 EQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5666666666666666
No 68
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.57 E-value=42 Score=33.63 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc----------------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 237 GITLISAIRAEVDRARVQVDQLIKEQCLN----------------HSEIEYLMKHFAEEKAAWRRKERERIREAISCIAE 300 (649)
Q Consensus 237 ~~Slv~aLk~EL~~AR~~I~eL~~E~~s~----------------~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ 300 (649)
-.-||..|+..+.+-|.++.+|++--... -.+|+.++.+|.||..- + +.+..+-.-++.
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR--~---~~L~qvN~lLRe 88 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQR--S---EELAQVNALLRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHh--H---HHHHHHHHHHHH
Confidence 34689999999999999999998866322 25788899999988652 3 334444455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 301 ELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEK 341 (649)
Q Consensus 301 ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ER 341 (649)
.||..+ ..|..|..||.-+...+..+..+|+...
T Consensus 89 QLEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 89 QLEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776544 4678888888888888877777776544
No 69
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.53 E-value=32 Score=32.18 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA--EEKAAWRRKERERIREAISCIAEELEVEKKLKRQTE 313 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla--EEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 313 (649)
+..|+.|+..+...+..+.......+.+++...+... .++....---|-..-..|..++.++..-+.....+.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888887777776655432 344444344455555567777777766554443333
No 70
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.40 E-value=99 Score=37.52 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhcccHHHHHHHHH--hhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 006350 348 EQVCDELARGIGEDRAEFEELKR--ESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAY 425 (649)
Q Consensus 348 E~vCDELAkgI~edkaEVe~LKr--es~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~F 425 (649)
-.-|.+-..++.+..-|---|-- |..++. |+++ +--+|-+.|+| +|.--|..||||.... -.++|.|
T Consensus 1100 ~~qce~ni~EL~qlQNEKchlLvEhEtqklK-elde--~h~~~~~~w~e-----~l~~rk~~lee~~~~~---~reqE~f 1168 (1187)
T KOG0579|consen 1100 KEQCEENIIELDQLQNEKCHLLVEHETQKLK-ELDE--KHHEMRELWQE-----NLIARKTVLEEKFEDE---LREQEVF 1168 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH-----hhhhhhhHHHHHHHHH---HHHHHHH
Confidence 34577777776666555444433 333443 3333 33467788975 7888888999986543 4588999
Q ss_pred Hhhc
Q 006350 426 LGTK 429 (649)
Q Consensus 426 L~sk 429 (649)
..-.
T Consensus 1169 ~~ms 1172 (1187)
T KOG0579|consen 1169 YGMS 1172 (1187)
T ss_pred hccc
Confidence 7643
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.14 E-value=1.2e+02 Score=39.23 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=8.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 006350 403 EAKYHFEEKNAAVERLRNELEAY 425 (649)
Q Consensus 403 eAk~~leeK~s~vdkL~~elE~F 425 (649)
+....+.+.-..++.+...++.|
T Consensus 453 e~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 453 EATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444333
No 72
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.03 E-value=66 Score=34.67 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=65.5
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKR 310 (649)
Q Consensus 231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr 310 (649)
.|-|.++--+-+-|.++|+++..|.+.|+.+.+..+.|++.+-.++..-... .-..+..|.++|-.= +.
T Consensus 37 ~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q--------~y~q~s~Leddlsqt---~a 105 (333)
T KOG1853|consen 37 NEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQ--------FYQQESQLEDDLSQT---HA 105 (333)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HH
Confidence 3445566667788999999999999999999999888887766555433221 111222333444322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhc
Q 006350 311 QTERLNKKLGKELAETKACLSNAMKELESEKRAKD-IMEQVCDELARGIG 359 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRe-llE~vCDELAkgI~ 359 (649)
.-|.+ +|..+||. +|-.+||+-+++.+ .+|++-..|-..|.
T Consensus 106 ikeql-~kyiReLE-------QaNDdLErakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 106 IKEQL-RKYIRELE-------QANDDLERAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred HHHHH-HHHHHHHH-------HhccHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 22333 34445554 34456676666665 46666666665553
No 73
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=84.01 E-value=19 Score=36.71 Aligned_cols=105 Identities=23% Similarity=0.312 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGE--DRAEFEEL 368 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~e--dkaEVe~L 368 (649)
|..-|..+..+++..||. ...-+.|+.+.+.++-.++. ||+..-+..|+|+=+--.. ++.++..+
T Consensus 91 ~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~le----------KAK~~Y~~~c~e~Ekar~~~~~~~~~~~~ 157 (234)
T cd07652 91 MSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAE----------KAKARYDSLADDLERVKTGDPGKKLKFGL 157 (234)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCccccccc
Confidence 444455666777666654 66677788888888777664 4555666778877332222 22212222
Q ss_pred HHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 006350 369 KRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEA 424 (649)
Q Consensus 369 Kres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~ 424 (649)
+.. +-...+ ||..|-|..+|+.+.-.+....+.++.|+..
T Consensus 158 k~~--~~~~~~--------------Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~ 197 (234)
T cd07652 158 KGN--KSAAQH--------------EDELLRKVQAADQDYASKVNAAQALRQELLS 197 (234)
T ss_pred cch--hhHHHh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111122 2345556666777777777777777776643
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.86 E-value=1.5e+02 Score=38.50 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh-------hcccHHHHHHHHHhhHHHHHH
Q 006350 327 KACLSNAMKELESEKRAKDIMEQVC-------DELARG-------IGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 327 Kss~~~alkelE~ERKaRellE~vC-------DELAkg-------I~edkaEVe~LKres~k~~eE 378 (649)
...+..-+..|+......+-.+.+| ++|-.- +.+.+.++..++++......+
T Consensus 406 l~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~ 471 (1486)
T PRK04863 406 LDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAA 471 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666667777 344444 444555555555554444433
No 75
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=83.70 E-value=15 Score=42.01 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=17.5
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006350 229 GIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLN 265 (649)
Q Consensus 229 ~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~ 265 (649)
|-.|-.+..+|-. =..-+..|+||+.|++.+
T Consensus 73 G~~d~~pDPLsPg------E~~l~~Kl~eLE~e~k~d 103 (508)
T PF00901_consen 73 GTGDEPPDPLSPG------EQGLQRKLKELEDEQKED 103 (508)
T ss_pred cCCCCCCCCCCHh------HHHHHHHHHHHHHHHhhH
Confidence 4455444444432 245677777777777654
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.53 E-value=1.3e+02 Score=37.69 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIME 348 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE 348 (649)
+|..++|.-+..+..++.+-++....+|
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 77
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.27 E-value=73 Score=36.41 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=89.5
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHHH--------------HHhhchhHHHHHHHHhHHHHHHHHHHHHHHHH--
Q 006350 229 GIEEQHSSGITLISAIRAEVDRARVQVDQLIK--------------EQCLNHSEIEYLMKHFAEEKAAWRRKERERIR-- 292 (649)
Q Consensus 229 ~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~--------------E~~s~~~eie~L~KqlaEEK~awKsKE~eki~-- 292 (649)
-|++.+..+--.-+.|+.|-.+-.+|++.|+. |....++||...+ +-||..-+-+.+-+++
T Consensus 233 eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~---eReasle~Enlqmr~qql 309 (502)
T KOG0982|consen 233 ELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKK---EREASLEKENLQMRDQQL 309 (502)
T ss_pred HhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444444456667776666666655542 2333334444433 2333333333333332
Q ss_pred -----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh---
Q 006350 293 -----------EAISCIAEELEVEK-KLKRQTERLNKKLGKELAETKACLSNAMKELESEKRA-KDIMEQVCDELAR--- 356 (649)
Q Consensus 293 -----------aai~slk~ELe~ER-k~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa-RellE~vCDELAk--- 356 (649)
+.+.++.++|+.|+ |+=.++|.+--+|..|-.. +--...+|.-.++|+++ -+|||++-.||-.
T Consensus 310 eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 310 EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33556667777776 5666777776666554433 33344455556666665 4677777666521
Q ss_pred ----------h-----hcccHHHHHHHHHhhHHHHHHHHHhHHH------HhhhHhh
Q 006350 357 ----------G-----IGEDRAEFEELKRESAKVKEEMEKEREM------LQLADVL 392 (649)
Q Consensus 357 ----------g-----I~edkaEVe~LKres~k~~eE~eeER~M------LqmAEvW 392 (649)
+ .-+.++||+.||++.-++. |..+|+.| +|++--|
T Consensus 389 ~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~-eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 389 RKLVLANPVRGRSSAREIELEQEVKRLRQPNRILS-EQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred HHHHhhccccCchhHHHHHHHHHHHHhccccchhh-hhhhhhhhhhhhHHHHHHHHH
Confidence 1 2257889999999988775 66677765 4566666
No 78
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.24 E-value=0.31 Score=57.85 Aligned_cols=143 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH-HHHHHHH--HHHHHHHHHH
Q 006350 219 ELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE-EKAAWRR--KERERIREAI 295 (649)
Q Consensus 219 ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE-EK~awKs--KE~eki~aai 295 (649)
+|=-..+..-.++|..--.+.-+..|..||-.-|.++.+|+..+......|..|--+|.+ |-.+.+. +.--++.+-|
T Consensus 673 eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri 752 (859)
T PF01576_consen 673 ELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARI 752 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHH
Confidence 344445555556777777888899999999999999999999999999999999888875 3334443 5667888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 006350 296 SCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEEL 368 (649)
Q Consensus 296 ~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 368 (649)
+.|-.+|+.|.+-+..+...++|+-+=|.|+ .-.+|.+||.-.-+.++||.|-.-|..||..+++.
T Consensus 753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl-------~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 753 RELEEELESEQRRRAEAQKQLRKLERRVKEL-------QFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999999999987766664 34678899999999999999999999888888774
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.09 E-value=42 Score=31.62 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006350 216 ASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLN 265 (649)
Q Consensus 216 TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~ 265 (649)
+...+..|+|=||.|.-++-.++..-..|...+...+..+..|.......
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL 78 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERL 78 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44667788888887777666666665555555555555555554444333
No 80
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.03 E-value=31 Score=37.18 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=45.9
Q ss_pred HHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 261 EQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESE 340 (649)
Q Consensus 261 E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~E 340 (649)
.+-....++.+|+++|.+.|..-= ++| +-. |+.++|.|+.=-+.|+.+ -|++|+++
T Consensus 17 rr~~~~~e~~~l~~~f~elkeq~y---k~k----La~----------Lq~~Leel~~g~~~eYl~-------~~~~L~~~ 72 (291)
T KOG4466|consen 17 RRANEESEMSNLEKQFSELKEQMY---KDK----LAQ----------LQAQLEELGQGTAPEYLK-------RVKKLDES 72 (291)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHH---HHH----HHH----------HHHHHHHHhccccHHHHH-------HHHHHHHH
Confidence 344455688999999998865421 122 222 234455555444444443 45666666
Q ss_pred HHHHHHHHHHHHHHHhhh--cccHHHHHHHHH
Q 006350 341 KRAKDIMEQVCDELARGI--GEDRAEFEELKR 370 (649)
Q Consensus 341 RKaRellE~vCDELAkgI--~edkaEVe~LKr 370 (649)
++.|-.+-.+-.||..+. .+|+-|+.+-|.
T Consensus 73 ~kerl~~aely~e~~~e~v~~eYe~E~~aAk~ 104 (291)
T KOG4466|consen 73 RKERLRVAELYREYCVERVEREYECEIKAAKK 104 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555554442 245555555443
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.44 E-value=92 Score=36.52 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHh----------hhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 006350 361 DRAEFEELKRESAKVKEEMEKEREMLQLADVLREE----------RVQMKLSEAKYHFEEKNAAVERLRNELEA 424 (649)
Q Consensus 361 dkaEVe~LKres~k~~eE~eeER~MLqmAEvWREE----------RVQMKL~eAk~~leeK~s~vdkL~~elE~ 424 (649)
-.+.+..|..+-++.+..+.+|-+.|.-+-.=++. .++.+.-+....+..|-....+|..++|.
T Consensus 406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555432222221 22222333334445555666666666654
No 82
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.25 E-value=19 Score=42.26 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
+.+|+.||++--.+|..|+++. |+|.|+|++=-++-+.-----...-+-.++.-++.|.-.-+.+-..-
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~---- 402 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTIS---- 402 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHH----
Confidence 4677778888888887777664 79999999765554432222222334456666766665554432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 365 (649)
+|.+-+-++.- -+|.=+.-+..|.+|.-.-+..+-|+
T Consensus 403 -~~~~~~~~~s~-------~~r~L~~~~~~~~~~~~~~~s~~~Ei 439 (852)
T KOG4787|consen 403 -ELERKNLELTT-------QVKQLETKVTPKPNFVVPSGTTTTEL 439 (852)
T ss_pred -HHHHhcccHHH-------HHHHHhhccccchhhcCCCcchHHHH
Confidence 22222223333 34445567889999986655444443
No 83
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=81.81 E-value=28 Score=41.51 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 310 RQTERLNKKLGKELAETKACLSNAMKELES 339 (649)
Q Consensus 310 rr~E~lnrKL~~ELaE~Kss~~~alkelE~ 339 (649)
+..+.+.++.-..|.++|..+.+.++++.+
T Consensus 566 ~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 566 KLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666654
No 84
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.07 E-value=1.6e+02 Score=36.95 Aligned_cols=95 Identities=14% Similarity=0.283 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhH----------------
Q 006350 327 KACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLAD---------------- 390 (649)
Q Consensus 327 Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAE---------------- 390 (649)
+.-++..-.+++..++.|.+...+-.++-..|.+-+.|+..++-+-..+.+|- ++.-.+|+.
T Consensus 306 el~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee--~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 306 ELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEE--KRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred hhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH--HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33355566778888889999888888888889888888888887766665432 222233322
Q ss_pred ---------hh-----------------hHhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 006350 391 ---------VL-----------------REERVQMKLSEAKYHFEEKNAAVERLRNELE 423 (649)
Q Consensus 391 ---------vW-----------------REERVQMKL~eAk~~leeK~s~vdkL~~elE 423 (649)
-| ++.-+||-+.+++..+++|+..+..|...|.
T Consensus 384 qFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 384 QFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 23 3556899999999999999998888776664
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.05 E-value=39 Score=41.03 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=69.4
Q ss_pred ccccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH-----HH
Q 006350 205 TRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA-----EE 279 (649)
Q Consensus 205 ~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla-----EE 279 (649)
+||.|+...++|-++.+.+++.-- --.||-|+-|+++|..-+.-...|..|++-..+.+...--... -.
T Consensus 458 ~kl~Dvr~~~tt~kt~ie~~~~q~------e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 458 GKLQDVRVDITTQKTEIEEVTKQR------ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred hhhhhheeccchHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 578888888888888777766543 2456777777777777777777777777654443332211110 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 006350 280 KAAWRRKERERIREAISCIAEELEVEKKLK-RQTERLNKKL 319 (649)
Q Consensus 280 K~awKsKE~eki~aai~slk~ELe~ERk~R-rr~E~lnrKL 319 (649)
-+-....+++-|+.+|.+-.+||+-|.... ..++++|--|
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334455667788888888888888876543 3345555443
No 86
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.97 E-value=79 Score=36.05 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=82.4
Q ss_pred cchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHH-----------
Q 006350 212 SGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEK----------- 280 (649)
Q Consensus 212 ~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK----------- 280 (649)
..|..+..-+.+|.++-++.+ -..-+..+..++..++..++++..++.....+++.+.-++.|=+
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~~----~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~ 213 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGANE----KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEA 213 (563)
T ss_pred HHhcCHHHHHHHHHHhcCchH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHH
Confidence 455566777777777754321 22335555677777777777777777777777777766665211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006350 281 ---AAWRRKERERIREAISCIAEELEVEK-----KLKRQTERLNKKLGKELAETKACLSNAMKEL-ESEKRAKDIMEQVC 351 (649)
Q Consensus 281 ---~awKsKE~eki~aai~slk~ELe~ER-----k~Rrr~E~lnrKL~~ELaE~Kss~~~alkel-E~ERKaRellE~vC 351 (649)
...+=...++|...+..+-.-|.++- -. +..|+ ...+.|..+ +...+.++ +.-..+...|++++
T Consensus 214 L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~---~~~l~-~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~ 286 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSL---LEGLG-EAQLALASV---IDGSLRELAEQVGNALTEVEEAT 286 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCH---HHHHH-HHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHH
Confidence 11122235666667776666664421 11 11111 111222222 22222222 23345667778888
Q ss_pred HHHHh---hhcccHHHHHHHHHhhHH
Q 006350 352 DELAR---GIGEDRAEFEELKRESAK 374 (649)
Q Consensus 352 DELAk---gI~edkaEVe~LKres~k 374 (649)
.+|.. .+.-|.++++++......
T Consensus 287 ~~l~~~~~~l~~dp~~L~ele~RL~~ 312 (563)
T TIGR00634 287 RELQNYLDELEFDPERLNEIEERLAQ 312 (563)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88877 555566666666555443
No 87
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.89 E-value=55 Score=31.56 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKE 261 (649)
Q Consensus 247 EL~~AR~~I~eL~~E 261 (649)
|+..++.++.+|.+|
T Consensus 82 e~~~~~~~l~~l~~e 96 (191)
T PF04156_consen 82 ELSELQQQLQQLQEE 96 (191)
T ss_pred hHHhHHHHHHHHHHH
Confidence 444444444444433
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.56 E-value=85 Score=33.50 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 289 ERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIME 348 (649)
Q Consensus 289 eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE 348 (649)
.++.+.-..|+.|+...|..-...+.... .||..+|..+...-.+++.-|+.-.-++
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~ 236 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQ 236 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555554444444433 3555555555555555554444333333
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.10 E-value=1.1e+02 Score=34.63 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhH
Q 006350 340 EKRAKDIMEQVCDELARGIGEDRAEFEELKRESA 373 (649)
Q Consensus 340 ERKaRellE~vCDELAkgI~edkaEVe~LKres~ 373 (649)
.-+.-.++-.|-.+++..|+.+++....|+..-.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666677777766666666655433
No 90
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.92 E-value=1e+02 Score=34.05 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQC 263 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~ 263 (649)
+..|+..|..+++++..|.++..
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666554
No 91
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.76 E-value=1.2e+02 Score=34.15 Aligned_cols=140 Identities=24% Similarity=0.229 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIRE-AISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~a-ai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
|+.-|.-|-.+-+.+|.=-+.|.+....+-+.|--||.|||-. |+.|-. .|+..+.-|--=-..++++|.+--|
T Consensus 140 lt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~R-----Heqis~mLilEcKka~~KaaEegqKA~ei~Lk 214 (561)
T KOG1103|consen 140 LTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKR-----HEQISLMLILECKKALLKAAEEGQKAEEIMLK 214 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 4555666666666666555555555555555666666666432 444433 3455555555555566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHH
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKERE 384 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~ 384 (649)
|-++-+.+|---..+.-|-|+--...--+|++-.||-.+..-.+||++.+-....-+.+|++-=++
T Consensus 215 lekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 215 LEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred hccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666555444444444444444555677777777777776777666654444444444443333
No 92
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.66 E-value=33 Score=40.98 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
+.+++..+..+..+.+|-...+.+++...++|.++|..+..+.+++...+|+.++.|+
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~ 581 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEV 581 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555555555544433
No 93
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.36 E-value=1.3e+02 Score=34.24 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006350 245 RAEVDRARVQVDQLIKEQCL 264 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s 264 (649)
..-+.+|..+|..|.++...
T Consensus 250 ~~~i~~a~~~i~~L~~~l~~ 269 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELAE 269 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666554433
No 94
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=77.90 E-value=26 Score=43.34 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=4.2
Q ss_pred CCcccccccc
Q 006350 637 GGCQQVLKSN 646 (649)
Q Consensus 637 ~~~~~~~~s~ 646 (649)
|.|...|-||
T Consensus 845 ~~~~~~~~~~ 854 (1021)
T PTZ00266 845 GTCKSNRVSN 854 (1021)
T ss_pred Ccccccccce
Confidence 3444444443
No 95
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=77.50 E-value=84 Score=31.69 Aligned_cols=80 Identities=9% Similarity=0.206 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKELA-ETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELK 369 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELa-E~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK 369 (649)
++.++..|..|.+. +-..|..|+..|. ++..-|..+.++++++||. ++.--..+.+...+-...|+..|
T Consensus 58 l~~a~~~i~~e~e~-------~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~---~~~~~~k~~k~~~~~~~~l~KaK 127 (236)
T cd07651 58 LKNSLDTLRLETES-------MAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKK---IQSHMEKLLKKKQDQEKYLEKAR 127 (236)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665543 3344555565554 4555566666666655552 22222233333333445666666
Q ss_pred HhhHHHHHHHH
Q 006350 370 RESAKVKEEME 380 (649)
Q Consensus 370 res~k~~eE~e 380 (649)
.+-.+.+.+++
T Consensus 128 ~~Y~~~c~~~e 138 (236)
T cd07651 128 EKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHhHH
Confidence 66666665554
No 96
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.10 E-value=86 Score=31.62 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
|.=++..|..++..+-.++..++....+++.+-..+. -| .+++..||+. =+-=||
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~----~~----~~~A~~Al~~-----------------G~EdLA 87 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVA----DW----QEKAELALSK-----------------GREDLA 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHC-----------------CCHHHH
Confidence 4555556666666666666666665555544433332 22 2333333333 233366
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
++..+-|..+...+..|+.+-. -+...+++|-..|.+.+.+++.+|.+
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~---~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELA---AVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665443 37777778888888777777777655
No 97
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=77.06 E-value=92 Score=34.54 Aligned_cols=117 Identities=22% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 006350 286 KERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365 (649)
Q Consensus 286 KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 365 (649)
+-+++|+...++-++-++.=+++-...--|.+|..-+-.+ ..-+++|-+---+|.-||.||.||-+-+.
T Consensus 22 ~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~ke-----k~~~Q~l~kt~larsKLeelCRelQr~nk------ 90 (391)
T KOG1850|consen 22 KVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKE-----KRNNQILLKTELARSKLEELCRELQRANK------ 90 (391)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHH
Q 006350 366 EELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNE 421 (649)
Q Consensus 366 e~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~e 421 (649)
.+|.++..--.+.|++|.--+ +-.|.-|-|.+.+|++-++..++|+.+
T Consensus 91 -~~keE~~~q~k~eEerRkea~-------~~fqvtL~diqktla~~~~~n~klre~ 138 (391)
T KOG1850|consen 91 -QTKEEACAQMKKEEERRKEAV-------EQFQVTLKDIQKTLAEGRSKNDKLRED 138 (391)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHhcchhhHHHHHH
No 98
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=76.90 E-value=2.2e+02 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.700 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 006350 273 MKHFAEEKAAWRRKERERIRE 293 (649)
Q Consensus 273 ~KqlaEEK~awKsKE~eki~a 293 (649)
++.+.+|---||.+-++-+..
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777666654443
No 99
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.77 E-value=25 Score=30.33 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 304 (649)
+.|.+|+.-|+++-.+|.-...+...-..|=+.+++++.+ +.-+-.++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988888888888877888877775 345677777778888777654
No 100
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=76.52 E-value=0.81 Score=54.44 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR--KERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs--KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
|--|..+|+.+++.+.+|.+-++..-+.+..+..++.+....+-. ++.....+-|..|+.+|+.-.-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777666666666665544333222 233445666778888888888888888888999
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 319 LGKELAETKACLSNA 333 (649)
Q Consensus 319 L~~ELaE~Kss~~~a 333 (649)
|..||.++...+..+
T Consensus 438 L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 438 LQDELEDLTSQLDDA 452 (859)
T ss_dssp ---------------
T ss_pred HHHhhccchhhhhhh
Confidence 999998887665554
No 101
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=76.48 E-value=9 Score=35.16 Aligned_cols=69 Identities=28% Similarity=0.435 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 006350 300 EELEVEKKLKRQTERLNKKLGKELAETKACL-SNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEEL 368 (649)
Q Consensus 300 ~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~-~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 368 (649)
.+|..|+..|..+|....++-.||.+.-.+| ..|=+=.-.+|+.|..+|.=-+.|-+.+.+-+..++.|
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~l 70 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESL 70 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999987766 66666667888888888888888887776655544443
No 102
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=76.35 E-value=95 Score=31.71 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006350 268 EIEYLMKHFAEEKAAWRRKERERIR---EAISCIAEELEVEKKLKRQT-ERLNKKLGKELAETKACL 330 (649)
Q Consensus 268 eie~L~KqlaEEK~awKsKE~eki~---aai~slk~ELe~ERk~Rrr~-E~lnrKL~~ELaE~Kss~ 330 (649)
.+..|.+.|..|+..++..|..++. ..|..|...|+.|-|-|-.+ ..|.+.+-..+..+...+
T Consensus 13 ~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v 79 (247)
T PF06705_consen 13 RFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERV 79 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999888888765 55788888888888777543 334444444444444333
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.14 E-value=1.5e+02 Score=33.78 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH--HH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEE--------LEVEK--KL 308 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~E--------Le~ER--k~ 308 (649)
.-|+.|+.|+.....+|.+...+....+++|+++-+++.--.... ..++.++...|..+.-= |-... ..
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~ 144 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQR 144 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhH
Confidence 446666677777777777776666666666666655554222221 33444444444444331 11111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 309 KRQTERLNKKLGKELAETKACLSNAMKELESEKR 342 (649)
Q Consensus 309 Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERK 342 (649)
=.|+-.+...|..++.+..-++.+.+++|-..+.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666677777777766666666666655443
No 104
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.09 E-value=1.2e+02 Score=32.89 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHH
Q 006350 336 ELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEME 380 (649)
Q Consensus 336 elE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~e 380 (649)
+....++...-+-+=..+||.++.+|..++-.+-++.+.++.+.+
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444466777777777777777766666655543
No 105
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.63 E-value=1.7e+02 Score=34.42 Aligned_cols=59 Identities=22% Similarity=0.194 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 323 LAETKACLSNAMKELESEKRAK-DIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 323 LaE~Kss~~~alkelE~ERKaR-ellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
+..+..-+..++++.+.||... .-|..|-|..++-.....+.++.+|-...+.++|+..
T Consensus 519 v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~~~ei~~ 578 (581)
T KOG0995|consen 519 VKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHKECEEIEK 578 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555667778888888877 7788888888888888888889988888888877653
No 106
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.54 E-value=1.5e+02 Score=37.47 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 304 (649)
.+-+..-.|++|+..-.+++..|++|..++.+-.+-+-.|... .+++.+...+.|+.+++.+..
T Consensus 170 l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 170 LAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888999999999999999998877655544444322 223344444444455444443
No 107
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.23 E-value=1.1e+02 Score=31.73 Aligned_cols=142 Identities=30% Similarity=0.392 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---H-HHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERI--REAISCIAEELEV---E-KKLKRQTER 314 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki--~aai~slk~ELe~---E-Rk~Rrr~E~ 314 (649)
|+-||.-|--|++.|..=..|--+ |.-++.+=+..-.+++.... ..++..-..||+. | .+.....+.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~-------Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~l 84 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVS-------LRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAEL 84 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHH
Confidence 555666676666666554444433 33344444433333333222 2223222222221 1 112223455
Q ss_pred HHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 315 LNKKLGK---ELAETKACLSNAM---------KELESEKRAKDIM-EQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 315 lnrKL~~---ELaE~Kss~~~al---------kelE~ERKaRell-E~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
+..|++. ||++.+..+..+. .+. .+-+++... ...-+.|-.++..+++|+...++..+......+.
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~-deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACAGRLKRQCQLLSES-DEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchhhhcccccc-chhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7777665 6777777666650 001 111111111 2333444555555555555555555555555666
Q ss_pred hHHHHhhhHhhhHhh
Q 006350 382 EREMLQLADVLREER 396 (649)
Q Consensus 382 ER~MLqmAEvWREER 396 (649)
||. +|.||.
T Consensus 164 ER~------~W~eEK 172 (202)
T PF06818_consen 164 ERR------TWQEEK 172 (202)
T ss_pred HHH------HHHHHH
Confidence 665 587764
No 108
>PRK14154 heat shock protein GrpE; Provisional
Probab=74.96 E-value=60 Score=33.44 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=51.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 235 SSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 235 ~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
-+..+-+..|..+|...+.++.+|...-.....+++.+.|....|+..-+..--+++-..|-.+.+-|+
T Consensus 48 ~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 48 GLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLI 116 (208)
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 355677899999999999999999888888888888888888888766655555555555555555444
No 109
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=74.80 E-value=1.4e+02 Score=32.79 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006350 215 TASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREA 294 (649)
Q Consensus 215 ~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aa 294 (649)
.|+..|.+-|+.+ ..+ -.-|+.||+.-+.+++.|..+-+..+..--.+-.+..-|--.--|.=-.|
T Consensus 20 ~t~~~l~~~~~sL---~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKk---- 85 (310)
T PF09755_consen 20 ATREQLRKRIESL---QQE-------NRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKK---- 85 (310)
T ss_pred CchHHHHHHHHHH---HHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3446666655554 222 34578888888888888888777665543333332221110000111111
Q ss_pred HHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccHHHHHHH
Q 006350 295 ISCIAEE---L--EVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRA-KDIMEQVCDELARGIGEDRAEFEEL 368 (649)
Q Consensus 295 i~slk~E---L--e~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa-RellE~vCDELAkgI~edkaEVe~L 368 (649)
|+.++.| | ..|+.==.=...|.+||.+ |-..|..+-+ -||.|.-. =..|-.-|+.|.++...+..+++.|
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~q-Lr~EK~~lE~---~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~L 161 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQ-LRQEKVELEN---QLEQEQEYLVNKLQKKIERLEKEKSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1111111 1 1222111223445555543 4444443333 33333322 1234456777777777777777777
Q ss_pred HHhhH
Q 006350 369 KRESA 373 (649)
Q Consensus 369 Kres~ 373 (649)
+++-+
T Consensus 162 r~EKV 166 (310)
T PF09755_consen 162 RREKV 166 (310)
T ss_pred HHHHH
Confidence 77544
No 110
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=74.08 E-value=2.3e+02 Score=35.14 Aligned_cols=96 Identities=25% Similarity=0.256 Sum_probs=67.9
Q ss_pred ccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHH
Q 006350 211 SSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERER 290 (649)
Q Consensus 211 ~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~ek 290 (649)
..+...+++|++|||+.-.-.=.+....+.|.-|..+|.+-+..|++-+++--.++..++.- ....++++...-|--.
T Consensus 153 t~G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r--~~~~~rl~~l~~elr~ 230 (984)
T COG4717 153 TSGSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESR--RAEHARLAELRSELRA 230 (984)
T ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 44567789999999998654456777789999999999999999999888888887766653 3344455555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKL 308 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~ 308 (649)
++..|+.+.+.++.=+.+
T Consensus 231 ~~~~i~~~~~~v~l~~~l 248 (984)
T COG4717 231 DRDHIRALRDAVELWPRL 248 (984)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 555566655555543333
No 111
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.95 E-value=1e+02 Score=31.06 Aligned_cols=110 Identities=25% Similarity=0.292 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhh
Q 006350 316 NKKLGKELAETKA---CLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVL 392 (649)
Q Consensus 316 nrKL~~ELaE~Ks---s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvW 392 (649)
|++|...|..+.. .+.+.++.|++.+.+-.-+..--..+-+.|.+.+-|-+.|.+...+ ++.||..|+---.=
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k----le~ErdeL~~kf~~ 132 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK----LEQERDELYRKFES 132 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4444444443332 3445556666666665566666666677777777777777776655 45555555421111
Q ss_pred hHhhhhhhhhhhhhhhhhhhHHH----HHHHHHHHHHHhhc
Q 006350 393 REERVQMKLSEAKYHFEEKNAAV----ERLRNELEAYLGTK 429 (649)
Q Consensus 393 REERVQMKL~eAk~~leeK~s~v----dkL~~elE~FL~sk 429 (649)
-=.=||.|..---+.||.|...| ++-.++|...|.+.
T Consensus 133 ~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 133 AIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11124555555555666665544 44455555555553
No 112
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=73.89 E-value=23 Score=40.66 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
-|+.-+|.||++-++...|+...+ ..|-+| +..-+++...|-+|||+|..++.-++|
T Consensus 511 llkva~dnar~qekQiq~Ek~ELk-------md~lre------------relreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 511 LLKVAIDNARAQEKQIQLEKTELK-------MDFLRE------------RELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888887777766653322 222222 223345556677888888777665555
No 113
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.78 E-value=1.1e+02 Score=31.07 Aligned_cols=112 Identities=27% Similarity=0.396 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhch-----------------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNH-----------------SEIEYLMKHFAEEKAAWRRKERERIREAISCIAEE 301 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~-----------------~eie~L~KqlaEEK~awKsKE~eki~aai~slk~E 301 (649)
-=|.-|+.+|..++..+.+|..|.+.-+ .++..+|.+..+|-..|+.+-+. +-..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~-------~q~~~ 84 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRK-------SQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3477888999999999988888876533 23444455555555554432211 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 302 LEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 302 Le~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
=+.||++|..-+ ||--++. .++-|+.--..+.|.| +++|...+...+++++.-.++
T Consensus 85 r~~~~klk~~~~--------el~k~~~----~l~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~~~~k 140 (194)
T PF15619_consen 85 RELERKLKDKDE--------ELLKTKD----ELKHLKKLSEDKNLAE--REELQRKLSQLEQKLQEKEKK 140 (194)
T ss_pred HHHHHHHHHHHH--------HHHHHHH----HHHHHHHHHHcCCchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222333333222 2222222 2333444445556666 678877777666666654443
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.55 E-value=1.8e+02 Score=33.73 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 250 RARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 250 ~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
..+.++.+|..+......+++.+-++|+
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666666666664
No 115
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.91 E-value=2.2e+02 Score=34.41 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=21.3
Q ss_pred hHHHHHHHH-hhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 217 SKELLKVLN-RIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQ 262 (649)
Q Consensus 217 S~ELlKVLn-rIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~ 262 (649)
.+++..-++ .+|.+.++-.- .....-|+.|+..-...+..+....
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666 67666555431 2233333444444444444444333
No 116
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.86 E-value=1.6e+02 Score=35.51 Aligned_cols=164 Identities=17% Similarity=0.224 Sum_probs=86.5
Q ss_pred cCccccccccccchhhh----HHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q 006350 201 SGIKTRLKDVSSGLTAS----KELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHF 276 (649)
Q Consensus 201 ~~~k~rl~e~~~~L~TS----~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kql 276 (649)
.|++...-.+++.+.|. +.|.+++++---+.-|+++..++......+.+-.+.+|=.|..=--.-+.+|
T Consensus 534 ~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQI------- 606 (717)
T PF09730_consen 534 SDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQI------- 606 (717)
T ss_pred chhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHHH-------
Confidence 36676666777777776 4455555554334445554334333333333333334333322222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 277 AEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELAR 356 (649)
Q Consensus 277 aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 356 (649)
|-=+.+-|+-.+ -..-||-.||...|.|+.+ .+|.+ .||=+||.-.|- -.-..--+|-=||.
T Consensus 607 aTLRTVLKANKq-TAEvALanLKsKYE~EK~~--v~etm-~kLRnELK~LKE--------------DAATFsSlRamFa~ 668 (717)
T PF09730_consen 607 ATLRTVLKANKQ-TAEVALANLKSKYENEKAM--VSETM-MKLRNELKALKE--------------DAATFSSLRAMFAA 668 (717)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh--HHHHH-HHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 333334443333 4456889999999999876 34444 467676654332 12223345555666
Q ss_pred hhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhh
Q 006350 357 GIGEDRAEFEELKRESAKVKEEMEKEREMLQLA 389 (649)
Q Consensus 357 gI~edkaEVe~LKres~k~~eE~eeER~MLqmA 389 (649)
.-.+|-.+|.+|.|+...+-+|-.-=-..|+||
T Consensus 669 RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmA 701 (717)
T PF09730_consen 669 RCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMA 701 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666777788888887665433222222356666
No 117
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.79 E-value=1.2e+02 Score=31.37 Aligned_cols=73 Identities=26% Similarity=0.281 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
|.-++.+|..|+..+-+++..++....+++.+.. ....| |.+.+.=+..-|-.||
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~----~~~k~---------------------e~~A~~Al~~g~E~LA 87 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQA----RAEKL---------------------EEKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---------------------HHHHHHHHHCCCHHHH
Confidence 5555666666666666666666555544443322 22222 2333334444557888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006350 321 KELAETKACLSNAMKELE 338 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE 338 (649)
+++.+.+..+.+.++-++
T Consensus 88 r~al~~~~~le~~~~~~~ 105 (225)
T COG1842 88 REALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888876666555444443
No 118
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.78 E-value=91 Score=37.91 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEVEKKLKRQTERLNKKLGK---------------ELAETKACLSNAMKELESEKRAKDIMEQVCD 352 (649)
Q Consensus 288 ~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~---------------ELaE~Kss~~~alkelE~ERKaRellE~vCD 352 (649)
|--|.=|+|.|+.|-. .||||+-.||..|-. ||.-.++--.-.-+.|..-.|.-++|-..-+
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 4456667888887765 588999999999843 2222222111112234445677788888888
Q ss_pred HHHhhhcccHHHH
Q 006350 353 ELARGIGEDRAEF 365 (649)
Q Consensus 353 ELAkgI~edkaEV 365 (649)
||-|.|..-+.|-
T Consensus 459 ellk~~e~q~~En 471 (861)
T PF15254_consen 459 ELLKVIENQKEEN 471 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 8888875444443
No 119
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.57 E-value=87 Score=29.52 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=61.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
.-|.+|..|-.-.++-..+-..|....+....++++|-..+..= ++++...-+.+..-...++.+.+.+..+
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL--------~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERL--------KEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777777777777777777776666432 2233333333333444555555544444
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 316 NKK---LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 316 nrK---L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
..+ +..|+.- .+-.+..++..++.+|+--+.|++.||..
T Consensus 107 ~~~~k~~kee~~k-----------------lk~~~~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 107 EAKLKQEKEELQK-----------------LKNQLQQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3334443 44455555555555555555566666643
No 120
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=72.54 E-value=1.1e+02 Score=32.17 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=9.7
Q ss_pred HhHHHHhhhHhhh
Q 006350 381 KEREMLQLADVLR 393 (649)
Q Consensus 381 eER~MLqmAEvWR 393 (649)
+|+++..|.|.|.
T Consensus 215 eE~Ri~~l~e~~~ 227 (252)
T cd07675 215 DERRTVKLSECYR 227 (252)
T ss_pred HHHHHHHHHHHHH
Confidence 5777777777776
No 121
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.49 E-value=2.2e+02 Score=37.85 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 006350 294 AISCIAEELEVE----KKLKRQTE---RLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFE 366 (649)
Q Consensus 294 ai~slk~ELe~E----Rk~Rrr~E---~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe 366 (649)
.+..++.+|+.+ ++.+..-| ..|..+..+|...+..|.+|..+|..-++.++..+..|+++.+-+.+-+.-++
T Consensus 1026 ~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Le 1105 (1822)
T KOG4674|consen 1026 QIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALE 1105 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHH
Confidence 355566666666 23333333 35677788899999999999999999999999999999999999877555544
Q ss_pred HHHHhhHHHHHHHHHhHHHHh
Q 006350 367 ELKRESAKVKEEMEKEREMLQ 387 (649)
Q Consensus 367 ~LKres~k~~eE~eeER~MLq 387 (649)
...-.+.+-.+.++..-..||
T Consensus 1106 qe~~~~~~~~~~L~~qNslLh 1126 (1822)
T KOG4674|consen 1106 QEVNELKKRIESLEKQNSLLH 1126 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544443
No 122
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=72.40 E-value=2.7 Score=37.87 Aligned_cols=38 Identities=37% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHH
Q 006350 343 AKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEME 380 (649)
Q Consensus 343 aRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~e 380 (649)
+..++++.=.+-..-|.+.+++++.|..+...++.+.+
T Consensus 87 A~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~ 124 (131)
T PF05103_consen 87 AEEIIEEAQKEAEEIIEEARAEAERLREEIEELKRQAE 124 (131)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444455556666666555554444433
No 123
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.46 E-value=1e+02 Score=29.98 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Q 006350 331 SNAMKELESEKRAKDIMEQVCDELARGIGEDRAE 364 (649)
Q Consensus 331 ~~alkelE~ERKaRellE~vCDELAkgI~edkaE 364 (649)
....++|++.+..=.-||..+..|...|..-+++
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444444444555555555555444444
No 124
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.38 E-value=96 Score=35.43 Aligned_cols=129 Identities=20% Similarity=0.239 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQC----LNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLN 316 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~----s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln 316 (649)
+.-|+++|+-|++.+.-..+=-- .....|+-..++-.||-++-+.-..+-|...=-.+-.-|+.||..-++- -
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~---~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQN---E 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHH---H
Confidence 45677777777766543322111 1122455555555566555555444444444344445577777654443 4
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 317 KKLGKELAETKACLSN--AMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 317 rKL~~ELaE~Kss~~~--alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
.|+-+|+...+.-++. ..-+||+|++-+.=.++--.||.. -.+.||.+||.+..+.
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~~a 174 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLAKA 174 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHhH
Confidence 6788889888888887 888999998766555544455543 3567777877766554
No 125
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.28 E-value=1.4e+02 Score=36.02 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=13.8
Q ss_pred hhHHHHHHHHhHHHHHHHH
Q 006350 266 HSEIEYLMKHFAEEKAAWR 284 (649)
Q Consensus 266 ~~eie~L~KqlaEEK~awK 284 (649)
..+++.|+..+.+++....
T Consensus 515 ~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 515 KEKLNELIASLEELERELE 533 (782)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3478888888888766544
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=71.12 E-value=1.5e+02 Score=32.33 Aligned_cols=200 Identities=21% Similarity=0.244 Sum_probs=101.2
Q ss_pred cccchhhhHHHHH-------HHHhh-hccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH---H
Q 006350 210 VSSGLTASKELLK-------VLNRI-WGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA---E 278 (649)
Q Consensus 210 ~~~~L~TS~ELlK-------VLnrI-w~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla---E 278 (649)
.++.+.+.+-||. .-++| -+|.+++..=.--+.+|..+|..+..+|.+|.+|-... +.|++-++ |
T Consensus 60 ty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k----deLL~~ys~~~e 135 (306)
T PF04849_consen 60 TYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK----DELLQIYSNDDE 135 (306)
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCcHhh
Confidence 4455555544432 33455 45667776656668889999999999999999987542 34444444 2
Q ss_pred HHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 279 EKAAWRRKERE---RI-------REAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIME 348 (649)
Q Consensus 279 EK~awKsKE~e---ki-------~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE 348 (649)
|-..--+-.-. .. ..-+..++.. =|.+|.=|.+|-.|-+..+..... -|.+.+.||.
T Consensus 136 e~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~K-------lk~LEeEN~~LR~Ea~~L~~et~~------~EekEqqLv~ 202 (306)
T PF04849_consen 136 ESEPESSESTPLRRNESSLSSQKCIQLEALQEK-------LKSLEEENEQLRSEASQLKTETDT------YEEKEQQLVL 202 (306)
T ss_pred hcccccCCCccccccccccccccchhHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHhh------ccHHHHHHHH
Confidence 21110000000 00 0011222221 134555566665555554433321 2334555555
Q ss_pred HHH--------------HHHHhhhcc---cHHHHHHHHHhhHHHHHH-----HHHhHHHHhhhHhhhHhhhhhhhhhhhh
Q 006350 349 QVC--------------DELARGIGE---DRAEFEELKRESAKVKEE-----MEKEREMLQLADVLREERVQMKLSEAKY 406 (649)
Q Consensus 349 ~vC--------------DELAkgI~e---dkaEVe~LKres~k~~eE-----~eeER~MLqmAEvWREERVQMKL~eAk~ 406 (649)
+.+ +|||+...+ ...||..|..+.+..... +|.|-.-.|+... --.|+.|..==.
T Consensus 203 dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s---ke~Q~~L~aEL~ 279 (306)
T PF04849_consen 203 DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS---KESQRQLQAELQ 279 (306)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 544 444443222 334444444433322211 2333333333333 246666655556
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhc
Q 006350 407 HFEEKNAAVERLRNELEAYLGTK 429 (649)
Q Consensus 407 ~leeK~s~vdkL~~elE~FL~sk 429 (649)
.|.+||+.+-.|=.|-+.=|++-
T Consensus 280 elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 280 ELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899998888877777666553
No 127
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=70.88 E-value=18 Score=39.53 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=44.7
Q ss_pred cccccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 006350 204 KTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 204 k~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E 261 (649)
+.|+++++++|.. +.+=|.+..|..|---.|+||+.|+.||-.-+++...+..-
T Consensus 192 eerv~kAs~~L~~----yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~ 245 (372)
T COG3524 192 EERVKKASNDLTD----YRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSV 245 (372)
T ss_pred HHHHHHHHhHHHH----HHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477777777764 56788999999999999999999999999999888776553
No 128
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=70.47 E-value=84 Score=28.74 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 286 KERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETK 327 (649)
Q Consensus 286 KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~K 327 (649)
.+-.++..++.++.++|.+.++-|.++-..|+.|+.||.+.+
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999998887533
No 129
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.07 E-value=1.3e+02 Score=30.61 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=74.6
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHF--AEEKAAWRRKERERIREAISCIAEELEVEKKL 308 (649)
Q Consensus 231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~ 308 (649)
+......---|.-|...|..|.....+..+--.-....+..+-..| +++++ +.+..-|..|..+|..=...
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~-------e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA-------EAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhchhHHHHHHHHHHHHHH
Confidence 3333344444666666666666666666555444433343333333 22322 23333344444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 309 KRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 309 Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
=+.+|.--.+...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+..|++.
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332222222222222223332334456677888888888888888888888888888777653
No 130
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.07 E-value=1e+02 Score=29.26 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEE 279 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEE 279 (649)
|-|+.|..|+...+.++..|.+++.....||=.|++...+=
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888999999999999999999888888888766543
No 131
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=69.79 E-value=37 Score=32.13 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhH-------HHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHH
Q 006350 344 KDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKER-------EMLQLADVLREERVQMKLSEAKYHFEEKNAAVE 416 (649)
Q Consensus 344 RellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER-------~MLqmAEvWREERVQMKL~eAk~~leeK~s~vd 416 (649)
..-|.+.|++|...|.+...=|..+-.-....-.++|.|+ .+|.....=|+ -+....+..+.||...|+
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~----~~~q~lq~~I~Ek~~eLE 97 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQRE----AQQQQLQALIAEKKMELE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888877777766665555666554 23332222221 233445678899999999
Q ss_pred HHHHHHHHHHh
Q 006350 417 RLRNELEAYLG 427 (649)
Q Consensus 417 kL~~elE~FL~ 427 (649)
+|+.|.++...
T Consensus 98 Rl~~E~~sL~k 108 (120)
T PF14931_consen 98 RLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.71 E-value=67 Score=37.99 Aligned_cols=68 Identities=24% Similarity=0.255 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE-----EKAAWRRKERERIREAISCIAEELEVEKKL 308 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE-----EK~awKsKE~eki~aai~slk~ELe~ERk~ 308 (649)
++.|..-+..-+.++++|..+-...+++|+.|-.++++ +--.|+++|-+-....|..|..+|+.+++.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555444432 233455555555556666666666666543
No 133
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.65 E-value=1.4e+02 Score=35.80 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=10.6
Q ss_pred hhHHHHHHHHhHHHHHH
Q 006350 266 HSEIEYLMKHFAEEKAA 282 (649)
Q Consensus 266 ~~eie~L~KqlaEEK~a 282 (649)
..+++.|+.+|.+++..
T Consensus 510 ~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 510 KEEINVLIEKLSALEKE 526 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34677777777666544
No 134
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.41 E-value=2.4e+02 Score=33.28 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKA 281 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~ 281 (649)
+..|+.+|+..+.+|.++..+....+.++..+...+.+.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~ 370 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEA 370 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666665555555554444444333
No 135
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.00 E-value=3.1e+02 Score=34.51 Aligned_cols=172 Identities=23% Similarity=0.324 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKEQCLNHSEIEYLMKHFA-EEKAAWRRKERERIREAISCI------------AEELEVEKKLKRQTE 313 (649)
Q Consensus 247 EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla-EEK~awKsKE~eki~aai~sl------------k~ELe~ERk~Rrr~E 313 (649)
||.--|..-++|++-.-.....+.+|...+. -+|.+-+-+|+++++.-|+.+ ..|+...+..+.++-
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k 261 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAK 261 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHH
Confidence 3444444444455444444445555544332 245555666677777777666 345555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H---HHHHHHHHHH------HhhhcccHHHHHHHHHhhHHH
Q 006350 314 RLNKKLGKELAETKACLSNAMKELESEKRA---------K---DIMEQVCDEL------ARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 314 ~lnrKL~~ELaE~Kss~~~alkelE~ERKa---------R---ellE~vCDEL------AkgI~edkaEVe~LKres~k~ 375 (649)
.--++|.++... +..-.++||.|+.. + +...++|.-| -+.|-+-+.+.|.||.+..+-
T Consensus 262 ~~~r~l~k~~~p----i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~r 337 (1072)
T KOG0979|consen 262 KELRKLEKEIKP----IEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKR 337 (1072)
T ss_pred HHHHHHHHhhhh----hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 23334455553321 1 1222223222 223344455556666666665
Q ss_pred HHHHHHhHHHHhhhHh-----hhHhhhhhhhhhhhh-hhhhhhHHHHHHHHHH
Q 006350 376 KEEMEKEREMLQLADV-----LREERVQMKLSEAKY-HFEEKNAAVERLRNEL 422 (649)
Q Consensus 376 ~eE~eeER~MLqmAEv-----WREERVQMKL~eAk~-~leeK~s~vdkL~~el 422 (649)
..+++.-++|+-=|+. =-=|+-|-++.++.. .++.|.+.+-..+.++
T Consensus 338 q~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~i 390 (1072)
T KOG0979|consen 338 QKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEI 390 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 5666666666543322 112445555545443 3344444544444443
No 136
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.00 E-value=1.3e+02 Score=34.31 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=25.2
Q ss_pred HHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhh
Q 006350 379 MEKEREMLQLADVLREERVQMKLSEAKYHFEEKN 412 (649)
Q Consensus 379 ~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~ 412 (649)
+|.+-.|+-+-|.-|+-|.+-.|++|..++.-|-
T Consensus 107 ~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~ 140 (459)
T KOG0288|consen 107 AEFENAELALREMRRKMRIAERLAEALKDLGLKD 140 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 6777778877777777788888888776665543
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=68.86 E-value=2.7e+02 Score=33.72 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=5.0
Q ss_pred EEEeccc
Q 006350 48 ILVGKRG 54 (649)
Q Consensus 48 iLvgKRg 54 (649)
++||+-|
T Consensus 29 lI~G~nG 35 (908)
T COG0419 29 LIVGPNG 35 (908)
T ss_pred EEECCCC
Confidence 5677777
No 138
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.86 E-value=2.6e+02 Score=34.03 Aligned_cols=126 Identities=23% Similarity=0.251 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE--EKAAWRRKERERIREAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE--EK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
.+....|..+|+.......+|+-+-.....+++.++-+|.| .++.-=..+-+-.+..-.-+-.+|+..+-..+-+|.-
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~ 667 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETR 667 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455666666666666666666666666666666666642 1111111111111111222222333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350 316 NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR 370 (649)
Q Consensus 316 nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 370 (649)
..-+-.|+.++..-+...-.||++||.. |.|+...-.+.+.+++..+.
T Consensus 668 ~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 668 LKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELERMKK 715 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHhhhc
Confidence 2223344555555555555556666543 44444444444444444443
No 139
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.96 E-value=47 Score=37.29 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAA--------WRRKERERIREAISCIAEELEVEKKLK 309 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~a--------wKsKE~eki~aai~slk~ELe~ERk~R 309 (649)
-|.+|+.+|...+..+.++..+.......+..| ..+.+ ... +....-..+.+.++.+.+++..-+..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL-EDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888777777666433 44432 110 111123455566666666654444333
No 140
>PF15294 Leu_zip: Leucine zipper
Probab=67.83 E-value=1.8e+02 Score=31.37 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR 370 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 370 (649)
+...|..++.|.+ ++|-|+-+++..-+ ...+-|..+...+++|..+.-.-....+++. =+..|.+.+..|..||-
T Consensus 130 l~kEi~rLq~EN~---kLk~rl~~le~~at-~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~-~~q~l~dLE~k~a~lK~ 204 (278)
T PF15294_consen 130 LNKEIDRLQEENE---KLKERLKSLEKQAT-SALDEKSKLEAQLKELQDEQGDQKGKKDLSF-KAQDLSDLENKMAALKS 204 (278)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccchhhHHHHHHHHHH
Confidence 3334444444443 56666666665544 3445577777777777763322222111222 23456777788888776
Q ss_pred hhHHHH
Q 006350 371 ESAKVK 376 (649)
Q Consensus 371 es~k~~ 376 (649)
+..+..
T Consensus 205 e~ek~~ 210 (278)
T PF15294_consen 205 ELEKAL 210 (278)
T ss_pred HHHHHH
Confidence 654443
No 141
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=67.35 E-value=2.1e+02 Score=31.90 Aligned_cols=123 Identities=21% Similarity=0.262 Sum_probs=71.0
Q ss_pred HHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH----HHHHHHHHHHHHHHHHHHH
Q 006350 221 LKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA----EEKAAWRRKERERIREAIS 296 (649)
Q Consensus 221 lKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla----EEK~awKsKE~eki~aai~ 296 (649)
-.||++|-+-.|....+.-.|....++|+-||.+..+-.-+ ...+++.|.|+++ .-+..|.-|-.++- +...
T Consensus 9 ~~~l~~I~~eLEkLN~sTDdIN~~E~~Le~ar~~Fretqv~---~t~kl~el~Kk~~k~I~ksrpf~elk~~er~-~r~e 84 (426)
T KOG2008|consen 9 EEVLPRIQGELEKLNQSTDDINRRETELEDARQKFRETQVE---ATVKLDELVKKIGKAIEKSRPFWELKRVERQ-ARLE 84 (426)
T ss_pred hHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccHHHHHHHHHH-HHHH
Confidence 35788887555554444567999999999999988876443 3456777777765 44455544333221 1111
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 297 CIAEELEVE------KKLKRQTERLNKKLG--------KELAETKACLSNAMKELESEKRAKDIM 347 (649)
Q Consensus 297 slk~ELe~E------Rk~Rrr~E~lnrKL~--------~ELaE~Kss~~~alkelE~ERKaRell 347 (649)
+-++--+.| +-.|.+.-.++..|- .+-.||=--.-+-++|.|.|+-+-+++
T Consensus 85 ~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~ 149 (426)
T KOG2008|consen 85 AQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELV 149 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222233 345666666665555 233344444456677888887666554
No 142
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=67.03 E-value=2e+02 Score=34.73 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 303 EVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAK 344 (649)
Q Consensus 303 e~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaR 344 (649)
..|+|+++..+.--++.-+|=..-|--..++-|+.|+++++.
T Consensus 296 kee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 296 KEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444555555555543
No 143
>PRK14140 heat shock protein GrpE; Provisional
Probab=67.00 E-value=1.3e+02 Score=30.55 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=46.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 235 SSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 235 ~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
.+..-+|..|+.+|+..+..|.+|...-....-+++.+.|....|+..-+.---+++-..+-.+-+-|
T Consensus 33 ~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888877666667777777777777766655555555555555555544
No 144
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=66.63 E-value=1.5e+02 Score=29.85 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHH
Q 006350 297 CIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVK 376 (649)
Q Consensus 297 slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 376 (649)
.++.=.++-++.|++.+....||.+++..+-..+.++.+.|+..-+.-+....-.........-.+.+++.++....+..
T Consensus 95 ~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~ 174 (251)
T cd07653 95 ELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKT 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHH
Confidence 33333444568888889999999999998888888888888877666555554444433333334466666666655543
No 145
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.51 E-value=3.1e+02 Score=33.49 Aligned_cols=177 Identities=21% Similarity=0.310 Sum_probs=94.9
Q ss_pred ccccccccccchhhhH-HHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHH
Q 006350 203 IKTRLKDVSSGLTASK-ELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKA 281 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~-ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~ 281 (649)
.|.++-.+.--|.-.+ ||+....++=-+.+++...=.-|-.|+..|-.++.+..-|..+--..+.+++.-..++..--.
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 888888888777777765567788888888888888888877777766666665554431111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHH---HHHHHHHHHHHH----------------HHHHH
Q 006350 282 --AWRRKERERIREAISCIAEELEV-EK---KLKRQTERLNKKL---GKELAETKACLS----------------NAMKE 336 (649)
Q Consensus 282 --awKsKE~eki~aai~slk~ELe~-ER---k~Rrr~E~lnrKL---~~ELaE~Kss~~----------------~alke 336 (649)
..=..|..+...-|..+++.|+. |+ .+.+++|.|..-| .+.|.+.+.-+. .|+.|
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~e 444 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALRE 444 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 11112222333334444444432 22 2334433333222 334444444444 55555
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHH
Q 006350 337 LESEKRA-KDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEM 379 (649)
Q Consensus 337 lE~ERKa-RellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ 379 (649)
+++-+.. ++.-+..+-+..-++..|+.|+..++.+...+..++
T Consensus 445 ker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 445 KERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5544433 222233345555566667777777776666665553
No 146
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=66.44 E-value=1.5e+02 Score=30.00 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 298 IAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEK--RAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ER--KaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
|...|+.=.+++..++.+....-.+|.+++.-....+.+...+- ....+++++=.|+.+-+.+-+.+++..|.+
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666677776665555555443332 223344455555555555555555555443
No 147
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=66.44 E-value=3.1e+02 Score=33.50 Aligned_cols=166 Identities=18% Similarity=0.217 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 244 IRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKEL 323 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~EL 323 (649)
.+.|||..-.+|+.|..--.. ..-.-..-++.+|.+..-..-+..|-..|+-.++-|.-|..|.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~lea----------------Reaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~ 407 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEA----------------REAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEY 407 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHH
Confidence 488999998888888654332 1112222344555566655556666666666676666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccH-HHHHHHHHhhHHHHHHH-HHhHHHHhhhHhhhHhhhhhh
Q 006350 324 AETKACLSNAMKELESEKRA-KDIMEQVCDELARGIGEDR-AEFEELKRESAKVKEEM-EKEREMLQLADVLREERVQMK 400 (649)
Q Consensus 324 aE~Kss~~~alkelE~ERKa-RellE~vCDELAkgI~edk-aEVe~LKres~k~~eE~-eeER~MLqmAEvWREERVQMK 400 (649)
-.-=+.+-+-++-+=+||-+ |.-+-.+-+|||-.|-.|+ +|-.++-+. +..|- +--++.||-+-.-+-=|.+-|
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~---lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQ---LMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555566643 3445556666666655432 222222221 11221 223456666655555454444
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 401 LSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 401 L~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
++...++.|+..+-+|..|++..=....
T Consensus 485 --e~etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 485 --EAETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred --hhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 3334445555588888888765544333
No 148
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.16 E-value=1.1e+02 Score=36.19 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhh
Q 006350 346 IMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLA 389 (649)
Q Consensus 346 llE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmA 389 (649)
.++.--+.|-+.+.+-+.+|+.|+++...+ ..=+.|.+-.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l----~k~~~lE~sG 517 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAEL----RKMRKLELSG 517 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhcC
Confidence 356667788888888888999999887654 3444444443
No 149
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=65.97 E-value=2.1e+02 Score=35.77 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006350 214 LTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIRE 293 (649)
Q Consensus 214 L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~a 293 (649)
-+|..++|.-|.|+| ++-.. +-.|+..=|--.+....+.. -.-.+.-+++++++.-+.-...--|.|..
T Consensus 712 ~~~~~~vl~~Lara~-y~~~~-----~~eak~~ll~a~~~~p~~~~-----v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAW-YEAGK-----LQEAKEALLKARHLAPSNTS-----VKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred ccCCHHHHHHHHHHH-HHhhh-----HHHHHHHHHHHHHhCCccch-----HHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 356789999999999 32221 33333332222222222221 33456667788887766655555555655
Q ss_pred HHHHH
Q 006350 294 AISCI 298 (649)
Q Consensus 294 ai~sl 298 (649)
+++.+
T Consensus 781 a~~~l 785 (1018)
T KOG2002|consen 781 AVKEL 785 (1018)
T ss_pred HHHHH
Confidence 55543
No 150
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=65.93 E-value=2.3e+02 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.065 Sum_probs=17.8
Q ss_pred hhhhhhhhhcCCCCCccccccchhhhh
Q 006350 583 IKSLRDHILSGSKTMSLQSFASPTRQW 609 (649)
Q Consensus 583 ~k~lR~~~lag~~~~~~~g~asp~rqw 609 (649)
++.|..||--|--..+.||-|+.+-+-
T Consensus 1261 sk~Lenqiakg~a~d~tqgdaaSliae 1287 (1424)
T KOG4572|consen 1261 SKALENQIAKGMAEDFTQGDAASLIAE 1287 (1424)
T ss_pred HHHHHHHHhcchhhhccCcchHHHHHH
Confidence 346777777777777777766554443
No 151
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=65.52 E-value=3.6e+02 Score=33.90 Aligned_cols=66 Identities=29% Similarity=0.264 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHhhH-HHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 006350 360 EDRAEFEELKRESA-KVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 360 edkaEVe~LKres~-k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~s 428 (649)
-||+|.+++++|.. ..-.|+=+||+=|-++-.=|.|+.+-+-.+-..+|.+--- +|..|++.....
T Consensus 1113 kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k---al~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1113 KDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK---ALDAEAEQEYEE 1179 (1189)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 36777777777743 2334566677777777766777666665555555544322 244555544443
No 152
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=65.45 E-value=2.9e+02 Score=32.77 Aligned_cols=189 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHH-----------------------HHHhhchhHHHHHHHHhH
Q 006350 221 LKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLI-----------------------KEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 221 lKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~-----------------------~E~~s~~~eie~L~Kqla 277 (649)
||--+.+| -+...-...-|..|+.|.++...+|.+|+ ..-...+.++++|.+.+.
T Consensus 20 lk~e~a~~--qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 20 LKEESAQW--QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 278 --EEKAAWRRKERERIREAISCIAEELEV-EKKLKRQTERL--NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCD 352 (649)
Q Consensus 278 --EEK~awKsKE~eki~aai~slk~ELe~-ERk~Rrr~E~l--nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCD 352 (649)
+++..-..++.+.+...++....-|.. |+++++.-|.+ ..||-..|.-=|.++++| +..-+.=++-|.++=|
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRA---lsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRA---LSQNRELKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH---HHhHHHHHHHHHHHHH
Q ss_pred HHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHH-hhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 006350 353 ELARGIGEDRAEFEELKRESAKVKEEMEKEREML-QLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLG 427 (649)
Q Consensus 353 ELAkgI~edkaEVe~LKres~k~~eE~eeER~ML-qmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~ 427 (649)
-|++-- +++.|+.. -+.-|..+. .|+.-.= .+|.+|-+.+..|+.|...+..|..+=..++.
T Consensus 175 ~Fv~lt-ne~~elt~----------~lq~Eq~~~keL~~kl~--~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~ 237 (617)
T PF15070_consen 175 AFVKLT-NENMELTS----------ALQSEQHVKKELQKKLG--ELQEKLHNLKEKLELKSQEAQSLQEQRDQYLG 237 (617)
T ss_pred HHHHHH-HhhhHhhH----------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 153
>PRK01156 chromosome segregation protein; Provisional
Probab=65.37 E-value=3e+02 Score=32.95 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.1
Q ss_pred hhHHHHHHHHhhhccc
Q 006350 216 ASKELLKVLNRIWGIE 231 (649)
Q Consensus 216 TS~ELlKVLnrIw~le 231 (649)
++.+..++|.+|-+++
T Consensus 147 ~~~~r~~~ld~~~~~~ 162 (895)
T PRK01156 147 DPAQRKKILDEILEIN 162 (895)
T ss_pred CHHHHHHHHHHHhChH
Confidence 4566677777766554
No 154
>PLN03188 kinesin-12 family protein; Provisional
Probab=64.99 E-value=3.8e+02 Score=34.59 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=27.9
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 006350 231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHS 267 (649)
Q Consensus 231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~ 267 (649)
.|-++--|+|.--|++||+-.|.++.+|..|-...++
T Consensus 1057 ~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~ 1093 (1320)
T PLN03188 1057 TEAESKWISLAEELRTELDASRALAEKQKHELDTEKR 1093 (1320)
T ss_pred HHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555666788888888888888888888877776654
No 155
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.81 E-value=1.1e+02 Score=31.18 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E 261 (649)
+....+..|+.||..+++++.++..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33455677777777777777765544
No 156
>PRK00106 hypothetical protein; Provisional
Probab=64.01 E-value=2.9e+02 Score=32.29 Aligned_cols=9 Identities=22% Similarity=0.095 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 006350 251 ARVQVDQLI 259 (649)
Q Consensus 251 AR~~I~eL~ 259 (649)
|+.+.+++.
T Consensus 40 A~~~A~~Il 48 (535)
T PRK00106 40 AEQEAVNLR 48 (535)
T ss_pred HHHHHHHHH
Confidence 444444444
No 157
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=64.00 E-value=1.8e+02 Score=31.89 Aligned_cols=107 Identities=14% Similarity=0.244 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHF--AEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLN 316 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln 316 (649)
.++-.++.+|.+|+.+|+|+++-.+..+..+...+-+- .||+++ -++.|= -=||++++-++
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~--------------QlqsEN---~LLrQQLddA~ 241 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLS--------------QLQSEN---MLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHH---HHHHHHHHHHH
Confidence 35677788888888888888887777666655544332 133332 221111 23567777777
Q ss_pred HHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccH
Q 006350 317 KKLG-KE--LAETKACLSNAMKELESEKRAKDI-MEQVCDELARGIGEDR 362 (649)
Q Consensus 317 rKL~-~E--LaE~Kss~~~alkelE~ERKaRel-lE~vCDELAkgI~edk 362 (649)
.|-- +| +.++.--|...++.|--|.....+ ||+=-.||..+....+
T Consensus 242 ~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 242 NKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7653 44 667777777777776555554444 5555555555544333
No 158
>PRK12704 phosphodiesterase; Provisional
Probab=63.98 E-value=2.8e+02 Score=32.05 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 305 EKKLKRQTERLNKKL 319 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL 319 (649)
|+++-++.+.|++|.
T Consensus 88 E~rL~~Ree~Le~r~ 102 (520)
T PRK12704 88 EKRLLQKEENLDRKL 102 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 159
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=63.60 E-value=3.1e+02 Score=32.42 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=97.6
Q ss_pred cccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH
Q 006350 206 RLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR 285 (649)
Q Consensus 206 rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs 285 (649)
.|++.+|-|.+ ..+= .+|=.|.++-..+-++|.- .|||.|..-+..+ +.+|+.|-..|.-|-.|.+.
T Consensus 240 ~m~~~gY~l~~-~~id---~~~~~L~~~l~~~~~~l~~--Leld~aeeel~~I-------~e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 240 DMKEEGYHLEH-VNID---SRLERLKEQLVENSELLTQ--LELDEAEEELGLI-------QEKIESLYDLLEREVEAKNV 306 (570)
T ss_pred HHHHccCCccc-ccHH---HHHHHHHHHHHHHHhHHHH--hhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666 3333 3333345555555555554 4678887766543 23577888788777777665
Q ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 286 KE---------RERIREAISCIAEELEVEKKLKRQTER---LNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDE 353 (649)
Q Consensus 286 KE---------~eki~aai~slk~ELe~ERk~Rrr~E~---lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDE 353 (649)
=+ =+|++..-.-+++|.+.=++.=+=+|. .-+|+.+||.+.++.+...+..++....+=-.+.+--.+
T Consensus 307 V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~ 386 (570)
T COG4477 307 VEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEE 386 (570)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 43 255666666677776665554443332 347889999999999999999999888888888777777
Q ss_pred HHhhhcccHHHHHHHH
Q 006350 354 LARGIGEDRAEFEELK 369 (649)
Q Consensus 354 LAkgI~edkaEVe~LK 369 (649)
+-+.+.+-+.+-+.+.
T Consensus 387 ~~~~l~~i~~~q~~~~ 402 (570)
T COG4477 387 IEKALTDIEDEQEKVQ 402 (570)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 7777665544444433
No 160
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.58 E-value=1.5e+02 Score=31.94 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=0.0
Q ss_pred ccccccccccchhhhHHHHHHHH
Q 006350 203 IKTRLKDVSSGLTASKELLKVLN 225 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVLn 225 (649)
++.++.++.+-..+-.++|+-|.
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666777777777666
No 161
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=63.20 E-value=2.5e+02 Score=34.64 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006350 335 KELESEKRAKDIMEQVCDELARGIGE 360 (649)
Q Consensus 335 kelE~ERKaRellE~vCDELAkgI~e 360 (649)
..+|+||+-+++--.+.+.=+..|.|
T Consensus 1001 ~~~Eqer~D~~la~RlA~sd~~~v~d 1026 (1259)
T KOG0163|consen 1001 NQLEQERRDHELALRLANSDGGQVED 1026 (1259)
T ss_pred hHHHHHHHHHHHHHHHhhccCCcccc
Confidence 34777777776655555554444433
No 162
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=62.63 E-value=57 Score=30.68 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 284 RRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDE 353 (649)
Q Consensus 284 KsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDE 353 (649)
..++.+.+.+.+......++...+.-+.+-.|-.|..+||+++|........+|-.-.+.=. +--.|--
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL~-v~a~C~~ 73 (125)
T PF03245_consen 5 YKRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRLR-VKATCPA 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceEE-EeccCCC
Confidence 34566777788888888999999999999999999999999999999998888887743222 4446655
No 163
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=62.44 E-value=95 Score=38.71 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=7.0
Q ss_pred hHHHhhhhhhhhccC
Q 006350 105 SARKLAATLWEINTV 119 (649)
Q Consensus 105 SARKLaAtLWEin~~ 119 (649)
.++.|...+|.++..
T Consensus 270 eL~dLI~~~L~~dPe 284 (1021)
T PTZ00266 270 ELNILIKNLLNLSAK 284 (1021)
T ss_pred HHHHHHHHHhcCChh
Confidence 344455555544433
No 164
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.89 E-value=3.3e+02 Score=34.50 Aligned_cols=14 Identities=36% Similarity=0.677 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 006350 304 VEKKLKRQTERLNK 317 (649)
Q Consensus 304 ~ERk~Rrr~E~lnr 317 (649)
.+++++.+-+.|+.
T Consensus 274 ~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 274 VDKKISEKEEKLAE 287 (1141)
T ss_pred HHHHHHHHHHHHhh
Confidence 44445554444444
No 165
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.81 E-value=2.6e+02 Score=31.00 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=9.8
Q ss_pred hhhhhhhhhhhhhhhHHHHH
Q 006350 398 QMKLSEAKYHFEEKNAAVER 417 (649)
Q Consensus 398 QMKL~eAk~~leeK~s~vdk 417 (649)
+-+|..++..++.-...++.
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34455555555544444444
No 166
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=61.67 E-value=1.4e+02 Score=27.96 Aligned_cols=60 Identities=33% Similarity=0.434 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
.+.+..+|-.+|+-...++.++--=++.-++.++--+.+..++-.+|...+.+++.||.+
T Consensus 44 ~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~ 103 (139)
T PF05615_consen 44 SQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666555555555555556666666666665555555555544
No 167
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=61.63 E-value=3.1e+02 Score=31.88 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=38.5
Q ss_pred ccCCCCCCCcccCccccccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHH
Q 006350 190 CSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVD 256 (649)
Q Consensus 190 ~~~~~t~s~ss~~~k~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~ 256 (649)
|.-+..|..+-+ |.||+++..=|++-.|-|++++ .+..|+.+|..|++-++
T Consensus 173 ~~e~~~~kdSQl--kvrlqe~~~ll~~Rve~le~~S--------------al~~lq~~L~la~~~~~ 223 (554)
T KOG4677|consen 173 YSEDWSPKDSQL--KVRLQEVRRLLKGRVESLERFS--------------ALRSLQDKLQLAEEAVS 223 (554)
T ss_pred HhhhcccchhhH--HHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 444555666533 8899999999999999999983 56778888888887664
No 168
>PRK00106 hypothetical protein; Provisional
Probab=61.30 E-value=3.2e+02 Score=31.92 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 006350 249 DRARVQVDQLIKEQ 262 (649)
Q Consensus 249 ~~AR~~I~eL~~E~ 262 (649)
..|+...+++.++-
T Consensus 49 eeAe~eAe~I~keA 62 (535)
T PRK00106 49 GKAERDAEHIKKTA 62 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666555555333
No 169
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=61.00 E-value=4.2e+02 Score=33.12 Aligned_cols=56 Identities=25% Similarity=0.198 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 006350 214 LTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMK 274 (649)
Q Consensus 214 L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~K 274 (649)
|++-.+-.++..|.- -+|+. .-+.+|.+||+++|-..++-..|++..+++...|..
T Consensus 345 ~~~~l~~~~~ear~~--~~q~~---~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 345 LKAQLENLKEEARRR--IEQYE---NQLLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred HhhhhhhHHHHHHHH--HHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555543 34443 348899999999998888877777777776665543
No 170
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.64 E-value=94 Score=32.40 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHH
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEME 380 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~e 380 (649)
|..|.+.++.-..++-.++|+..+.=+-.++=-++|-|.+.+...|...|..++.+++++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555556666666666677777777776654
No 171
>PRK14145 heat shock protein GrpE; Provisional
Probab=60.53 E-value=1.8e+02 Score=29.91 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 304 (649)
..-+..|+.+|+.++.++.+|...-.....+++.+.|....|+...+..--+++-..|-.+.+.|+.
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLer 110 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFER 110 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 3457889999999999999999988899999999999999999888888888888777777777763
No 172
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=60.40 E-value=2.5e+02 Score=31.22 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006350 328 ACLSNAMKELESEKRAKDIMEQVCDELARGIGE 360 (649)
Q Consensus 328 ss~~~alkelE~ERKaRellE~vCDELAkgI~e 360 (649)
.+..+.|.|+++.|..+..|+.+-.+++.++..
T Consensus 346 ~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 346 SAYDSLLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777777776666654
No 173
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.35 E-value=4.6e+02 Score=33.38 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=12.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHH
Q 006350 399 MKLSEAKYHFEEKNAAVERLRNEL 422 (649)
Q Consensus 399 MKL~eAk~~leeK~s~vdkL~~el 422 (649)
|++...+..|..+.+.+...-.|+
T Consensus 419 er~~~~~~~L~~~i~s~~~~~~e~ 442 (1141)
T KOG0018|consen 419 ERLDKRRNKLAAKITSLSRSYEEL 442 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444443
No 174
>PRK14151 heat shock protein GrpE; Provisional
Probab=60.24 E-value=1.7e+02 Score=29.32 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 237 GITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 237 ~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
..+.+..|+.+|+..+.++.+|...-.....+++.+.|+...|+...+.---+++-..+-.+-+-|+
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnle 84 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLE 84 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3456778888888888888888776666677788887777777655544444444444444444443
No 175
>PRK14143 heat shock protein GrpE; Provisional
Probab=60.08 E-value=1.7e+02 Score=30.71 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR 285 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs 285 (649)
-+..|+.+|...+..+.+|...-.+...+++.+.|+...|+...+.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777666556666777777776666544433
No 176
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=59.38 E-value=84 Score=34.69 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 248 VDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKER-ERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAET 326 (649)
Q Consensus 248 L~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~-eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~ 326 (649)
+..|+.++..|.............+++-|.|+-..-...+- ..+..-+...+.-.+++.+.++.-+.-..++++|..+-
T Consensus 319 ~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~~~~ 398 (432)
T smart00498 319 LKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKETTEY 398 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555555555555544331000000 23333333333333333333333344444555555443
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 327 KAC-----LSNAMKELESEKRAKDIMEQVCDEL 354 (649)
Q Consensus 327 Kss-----~~~alkelE~ERKaRellE~vCDEL 354 (649)
... -.+.+.+...++....+|..||.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 399 EQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred hhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 332 1234555566666666666666654
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.27 E-value=2.6e+02 Score=32.33 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYL--MKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKE 322 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L--~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~E 322 (649)
+++|..-+....++++|..+.+.+...+ .+++.|.|+.. ...-|..+..||.+|| -+|++|.+.
T Consensus 346 qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q-------~q~k~~k~~kel~~~~-------E~n~~l~kn 411 (493)
T KOG0804|consen 346 QSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQ-------LQTKLKKCQKELKEER-------EENKKLIKN 411 (493)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 3577777777788888877766655555 45555555542 2233445566666665 456665544
Q ss_pred H
Q 006350 323 L 323 (649)
Q Consensus 323 L 323 (649)
+
T Consensus 412 q 412 (493)
T KOG0804|consen 412 Q 412 (493)
T ss_pred H
Confidence 4
No 178
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=58.70 E-value=1.9e+02 Score=28.50 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 244 IRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKEL 323 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~EL 323 (649)
+..=|+.=+..|...+.+-...+.+.+.++.++.+.....|.+-++.+..+......+.+.. .+.++..+.+.+
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~------~~~A~~e~~~~~ 129 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA------IAKADAEIAAKA 129 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 33446777788888888888888888888888888877777766666666655544443332 223344455555
Q ss_pred HHHHHHH
Q 006350 324 AETKACL 330 (649)
Q Consensus 324 aE~Kss~ 330 (649)
++++.-+
T Consensus 130 aea~~~I 136 (181)
T PRK13454 130 AESEKRI 136 (181)
T ss_pred HHHHHHH
Confidence 5544333
No 179
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=58.67 E-value=35 Score=28.57 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006350 295 ISCIAEELEVEKKLKRQTERLNK 317 (649)
Q Consensus 295 i~slk~ELe~ERk~Rrr~E~lnr 317 (649)
|+.|..+|+.|.++|.=+|.+=+
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~ 25 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQ 25 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777776666665544
No 180
>PRK12704 phosphodiesterase; Provisional
Probab=58.49 E-value=3.4e+02 Score=31.33 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 006350 293 EAISCIAEELEVE 305 (649)
Q Consensus 293 aai~slk~ELe~E 305 (649)
.-+...+.|++.|
T Consensus 64 eE~~~~R~Ele~e 76 (520)
T PRK12704 64 EEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 181
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.40 E-value=2.1e+02 Score=29.31 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
.-+..|+.+|...+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+-|
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnL 102 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNL 102 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 4467888889888889988877777777778888877777766555544444444444444444
No 182
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.28 E-value=1.9e+02 Score=29.34 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
-+..|+.+|+..+.++.+|........-+++.+.|.+..|+..-+.--.+++-..|-.+.+-|+
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLe 96 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLE 96 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3677888999999999999888888888999999999999988888888888777777777776
No 183
>PF13514 AAA_27: AAA domain
Probab=58.00 E-value=4.6e+02 Score=32.65 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=16.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 400 KLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 400 KL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
.+.+++..++.-...+..+..+|+.++..-.
T Consensus 809 ~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~ 839 (1111)
T PF13514_consen 809 QLEELEEELEQAEEELEELEAELAELLEQAG 839 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444445555666666666665433
No 184
>PTZ00121 MAEBL; Provisional
Probab=57.43 E-value=6e+02 Score=33.82 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=8.4
Q ss_pred ceEEEecccCCCCCCCCCC
Q 006350 46 RAILVGKRGGRGGGGGSST 64 (649)
Q Consensus 46 r~iLvgKRg~~g~~gG~sT 64 (649)
+-.-.|=-|-||.= |+.+
T Consensus 773 ~~~yfG~~GlGGRL-Gsn~ 790 (2084)
T PTZ00121 773 LFKYYGLYGFGGRL-GANI 790 (2084)
T ss_pred ceeeeeeeccCccc-cccc
Confidence 33335555544444 4444
No 185
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=56.58 E-value=4.4e+02 Score=31.99 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=50.2
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 006350 231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR------KERERIREAISCIAEELEV 304 (649)
Q Consensus 231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs------KE~eki~aai~slk~ELe~ 304 (649)
.+-+..+++.+++=. -+.-|.++..|+..+.+..=++--|..|+..-+.--+- -.+.++.++= +-|.+
T Consensus 91 les~~p~~~~~s~~~--~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatE----EmLQq 164 (861)
T KOG1899|consen 91 LESPSPSMSTVSCPE--YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATE----EMLQQ 164 (861)
T ss_pred HhccCCCCCCccCCc--chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHH----HHHHH
Confidence 355556666664432 22334445555555555444444444444332100000 0022333222 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 305 EKKLKRQTERLNKKLGKELAETKACLSNAM 334 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL~~ELaE~Kss~~~al 334 (649)
|=-.|.-+|.-.--|-.|+++.|.-+...-
T Consensus 165 ellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 165 ELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 556678888888888899999887665543
No 186
>PRK14146 heat shock protein GrpE; Provisional
Probab=56.55 E-value=2e+02 Score=29.78 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
-+..|+.+|+.++.++.+|...-.....+++.+.|+...|+...+.---+++-..|-.+-+-|+
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~Dnle 118 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLE 118 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3788899999999999999888888888999999999988887777666666666666666665
No 187
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.49 E-value=4.5e+02 Score=32.13 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 006350 413 AAVERLRNELEAY 425 (649)
Q Consensus 413 s~vdkL~~elE~F 425 (649)
+++-+++.|+|..
T Consensus 214 aa~a~mk~ev~~~ 226 (769)
T PF05911_consen 214 AALAQMKNEVESL 226 (769)
T ss_pred HHHHHhHHHHHHh
Confidence 7889999999986
No 188
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=56.45 E-value=4.6e+02 Score=32.22 Aligned_cols=64 Identities=31% Similarity=0.422 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhh
Q 006350 334 MKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSE 403 (649)
Q Consensus 334 lkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~e 403 (649)
.++++.-+|.=+-|+..=|.|...|.+..+|+..|++.+ ++++-+|--+-.--.++||+|.+..
T Consensus 222 ~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~------~~~~~~mrd~~~~~~e~~~~~~~~~ 285 (916)
T KOG0249|consen 222 EQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSS------LEKEQELRDHLRTYAERRRETETTN 285 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HhhhhhhcchhhhhHHHHHhhcchh
Confidence 344444444444455555666666776777777766311 2333344444445566777776663
No 189
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.19 E-value=2.3e+02 Score=28.66 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=96.8
Q ss_pred hhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006350 216 ASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAI 295 (649)
Q Consensus 216 TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai 295 (649)
+..++=.-||.| -..|+.+|+.|+.|+..-+.......+.-.....+...|..-|. ++..-+
T Consensus 10 af~~iK~YYndI------T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~------------~a~~e~ 71 (201)
T PF13851_consen 10 AFQEIKNYYNDI------TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK------------KAEEEV 71 (201)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHH
Confidence 345555566666 24788999999999988877665555444333333333322221 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 296 SCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 296 ~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
..++.+|..= .|.-..|..+|.-+...-++|..-+-.-++|+.=|..+-++-.+.....+..-.+...-
T Consensus 72 ~eL~k~L~~y-----------~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 72 EELRKQLKNY-----------EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223222 22333455555556666666777777777777777777666554443333322222211
Q ss_pred H--HHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 376 K--EEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 376 ~--eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
- .-+=-|++|--|.+..= .-+.+|.+.-.+.-=.-+.|+.+...|+.-|.+|.
T Consensus 141 ~~~kn~lLEkKl~~l~~~lE--~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 141 TGLKNLLLEKKLQALSEQLE--KKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11234566666666442 22333333322222224577778888888888875
No 190
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.68 E-value=1.6e+02 Score=26.62 Aligned_cols=51 Identities=41% Similarity=0.419 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 318 KLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 318 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
++-+-|.+...-...|++..+.|.+.+.-.+ .+|....+++..|+.+..++
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~-------~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKE-------AEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4444456666666677777777777665554 44444445555555544433
No 191
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.52 E-value=1.6e+02 Score=26.50 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=49.9
Q ss_pred HHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 258 LIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKEL 337 (649)
Q Consensus 258 L~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkel 337 (649)
+...+...-.-++..+-++.-| |+|+..+..++-.+ ++-|..|.+.=+..-.=|..+...|.++...|...++++
T Consensus 18 ~~~~k~~~~~~lE~k~~rl~~E----k~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 18 QADKKVKELTILEQKKLRLEAE----KAKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444555555555 45556666665554 455777755445555567778889999999999999999
Q ss_pred HHH
Q 006350 338 ESE 340 (649)
Q Consensus 338 E~E 340 (649)
|+|
T Consensus 93 Eke 95 (96)
T PF08647_consen 93 EKE 95 (96)
T ss_pred hcc
Confidence 986
No 192
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=55.34 E-value=3.8e+02 Score=30.86 Aligned_cols=89 Identities=25% Similarity=0.339 Sum_probs=51.8
Q ss_pred hhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 006350 227 IWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEV-- 304 (649)
Q Consensus 227 Iw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~-- 304 (649)
=|-|-|.-++++|.|-|+|.--.. .--+||.+-+ +-...++-|.||.-+| |++|+.||++
T Consensus 373 drLLAEETAATiSAIEAMKnAhrE--EmeRELeKsq-SvnsdveaLRrQylee---------------lqsvqRELeVLS 434 (593)
T KOG4807|consen 373 DRLLAEETAATISAIEAMKNAHRE--EMERELEKSQ-SVNSDVEALRRQYLEE---------------LQSVQRELEVLS 434 (593)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHH--HHHHHHHhhh-ccccChHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 366788888999999998752110 1112333333 5556788888888877 4556666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 305 EKKLKRQTERLNKKLGKELAETKACLSNAMK 335 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alk 335 (649)
|.=.-+=+| |.-|+..|.+-..++.+|-+
T Consensus 435 EQYSQKCLE--nahLaqalEaerqaLRqCQr 463 (593)
T KOG4807|consen 435 EQYSQKCLE--NAHLAQALEAERQALRQCQR 463 (593)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 444444444 33355555555555555443
No 193
>PRK14156 heat shock protein GrpE; Provisional
Probab=55.25 E-value=1.8e+02 Score=29.29 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEE 301 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~E 301 (649)
++..+|+..+.++.+|...-.....+++.+.|+...|+...+.--.+++-..|-.+-+-
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDn 89 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDN 89 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 56667777777777776666666667777777776665554444444433333333333
No 194
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.22 E-value=1.1e+02 Score=31.09 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
..-.-+..|+.+|.....++.+|...-....-+++.+.|+...|+...+. ..
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~----------------------------~a 88 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK----------------------------YG 88 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HH
Confidence 34455778888888888888888766666666777777776666443322 24
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006350 316 NKKLGKELAETKACLSNAMK 335 (649)
Q Consensus 316 nrKL~~ELaE~Kss~~~alk 335 (649)
..+++++|..+--.|..|+.
T Consensus 89 ~~~~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 89 NESLILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHHHHhHHhHHHHHHh
Confidence 55677777776666666554
No 195
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=55.14 E-value=2.5e+02 Score=28.63 Aligned_cols=41 Identities=29% Similarity=0.635 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 272 LMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 272 L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
||.++... +|+.- -+-+.+.+..+..+|. ++|++++.+|+.
T Consensus 125 Ll~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~ 165 (221)
T PF05700_consen 125 LLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRE 165 (221)
T ss_pred HHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 56666554 56531 2333344444444442 355666666653
No 196
>PRK01156 chromosome segregation protein; Provisional
Probab=54.91 E-value=4.5e+02 Score=31.56 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEY 271 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~ 271 (649)
++.-+..+|..-...|++|..+......+++.
T Consensus 470 ~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 470 IINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555666665555444444433
No 197
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.53 E-value=1.4e+02 Score=34.44 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEK 306 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ER 306 (649)
|..|-.++..-|.++..|+++.+..+.|-+.|.++- ..-..+|..+|+..+.||..|+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~--------~~id~~i~~av~~~~~~~~~~~ 118 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKRE--------QSIDQQIQQAVQSETQELTKEI 118 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHhhhHHHHHHH
Confidence 556667777778888888888777777666664432 2346778888888887777665
No 198
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.47 E-value=3.9e+02 Score=30.76 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIMEQVCD 352 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE~vCD 352 (649)
+||.+-+..|.++.--|+.+|+.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665555555444
No 199
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=54.35 E-value=5.2e+02 Score=32.21 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 252 RVQVDQLIKEQCLNHSEIEYLMKHFA-----------------------EEKAAWRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 252 R~~I~eL~~E~~s~~~eie~L~Kqla-----------------------EEK~awKsKE~eki~aai~slk~ELe~ 304 (649)
+.+|-+|.+|++.....+.+.+|+|- +++..|-..|+.+|.+++..-..-+.+
T Consensus 669 ~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~ 744 (988)
T KOG2072|consen 669 ARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKD 744 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766665555555443 677788888888888776654444433
No 200
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.23 E-value=2.9e+02 Score=29.22 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 006350 409 EEKNAAVERLRNELEAYLG 427 (649)
Q Consensus 409 eeK~s~vdkL~~elE~FL~ 427 (649)
.++-..+.+|-.+|=.|..
T Consensus 163 ~~~~~L~~~l~~ell~~ye 181 (239)
T COG1579 163 SKREELKEKLDPELLSEYE 181 (239)
T ss_pred HHHHHHHHhcCHHHHHHHH
Confidence 3344444555555544443
No 201
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.89 E-value=2.7e+02 Score=28.75 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006350 311 QTERLNKKLGKELAETKACLSN-------AMKELESEKRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~Kss~~~-------alkelE~ERKaRellE~vCDELAkgI~ 359 (649)
..+.+.++...|+.-.++.+++ .-..|+...+..+=|-.+||||.-.++
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444444333 334666777777788899999976654
No 202
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.74 E-value=4.2e+02 Score=31.80 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=31.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
.-++-+..|..+|.+.+..+.++..+....+.+.+.|-+++.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 344667788888888888888888888777666666666555
No 203
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.70 E-value=5.4e+02 Score=32.20 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGE 360 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~e 360 (649)
|..+=.++..-+....|.+|.+..+-.=++++--+|+..|.+
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444555556666777777777777666666666665543
No 204
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=53.31 E-value=22 Score=42.06 Aligned_cols=85 Identities=27% Similarity=0.351 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHH-------HHhHHHHhhhH--------hhhHh-hhhhhhhhhhhh-
Q 006350 345 DIMEQVCDELARGIGEDRAEFEELKRESAKVKEEM-------EKEREMLQLAD--------VLREE-RVQMKLSEAKYH- 407 (649)
Q Consensus 345 ellE~vCDELAkgI~edkaEVe~LKres~k~~eE~-------eeER~MLqmAE--------vWREE-RVQMKL~eAk~~- 407 (649)
++.|+.-+.+++.|.+.++|||.||.+++|..+.+ +-|+++=-..+ .||=| |+-|--.|--..
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~~~~ee~~~~~ 439 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLDTPDEEDESPV 439 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeecccccCCccCCCCcc
Confidence 34555666667778899999999999998766543 24444444443 89855 333221111111
Q ss_pred --hhhhh-HHHHHHHHHHHHHHhhc
Q 006350 408 --FEEKN-AAVERLRNELEAYLGTK 429 (649)
Q Consensus 408 --leeK~-s~vdkL~~elE~FL~sk 429 (649)
.+.|. .-||....++|+=|..+
T Consensus 440 ~~~~~k~k~~VDDIV~eVE~slGrk 464 (669)
T PF08549_consen 440 EQSENKPKYKVDDIVAEVEKSLGRK 464 (669)
T ss_pred cccCccccccHHHHHHHHHHHhCCe
Confidence 11221 24899999999998865
No 205
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.94 E-value=89 Score=35.89 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 317 KKLGKELAETKACLSNAMKELESE 340 (649)
Q Consensus 317 rKL~~ELaE~Kss~~~alkelE~E 340 (649)
..+-+||..++.++.+|-+|||--
T Consensus 305 e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 305 ETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333357888888888887777753
No 206
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=52.89 E-value=2.3e+02 Score=27.68 Aligned_cols=54 Identities=28% Similarity=0.416 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHH
Q 006350 266 HSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL-EVEKKL-KRQTERLNKKL 319 (649)
Q Consensus 266 ~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL-e~ERk~-Rrr~E~lnrKL 319 (649)
+.||.+|+|.|.+.+--+-.+-=..+...|..+.+.+ ..-..+ -.++..++.+|
T Consensus 20 qgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 20 QGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4588899999988777777777777788888887655 433333 44666666665
No 207
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=52.83 E-value=3.5e+02 Score=29.75 Aligned_cols=96 Identities=19% Similarity=0.279 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHhhchhHHHHHHHHh--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQ----LIKEQCLNHSEIEYLMKHF--AEEK----AAWRRKERERIREAISCIAEELEVEKKLKR 310 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~e----L~~E~~s~~~eie~L~Kql--aEEK----~awKsKE~eki~aai~slk~ELe~ERk~Rr 310 (649)
|.-|+.|||.-+.+-.+ ...+-...+...+.|-|-| .||. ..+=+.+-.-++|----+..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 66788888876665443 3333334444444454432 3443 233344445555555667788999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 311 QTERLNKKLGKELAETKACLSNAMKELESEKRA 343 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa 343 (649)
|+|. |+.-..+-+..|+.|++.=-.+
T Consensus 88 rLEt-------EiES~rsRLaaAi~d~dqsq~s 113 (305)
T PF14915_consen 88 RLET-------EIESYRSRLAAAIQDHDQSQTS 113 (305)
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHHHhh
Confidence 7652 3333444444555555543333
No 208
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.58 E-value=6.2e+02 Score=32.57 Aligned_cols=12 Identities=8% Similarity=-0.044 Sum_probs=8.0
Q ss_pred CcceeeccCCCC
Q 006350 488 LHSIELNMDNGS 499 (649)
Q Consensus 488 lhsiELNmdg~s 499 (649)
..+|-+..+|.-
T Consensus 1070 ~~~i~~~~~g~~ 1081 (1353)
T TIGR02680 1070 GLVVSLVYQGRP 1081 (1353)
T ss_pred eEEEEEEeCCcc
Confidence 667777776654
No 209
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=51.82 E-value=1.5e+02 Score=34.79 Aligned_cols=94 Identities=27% Similarity=0.334 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHh
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADV 391 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEv 391 (649)
++.+=.+|.+||+.++.+.-+++-+ .|.+...+++.+ |+.-.++.+.+..+..... .+.+|.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l~~--s~~~v~~l~~~l-d~a~~e~d~le~~l~~y~~-------------~L~~~~~- 65 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSLLE--SEKQVNSLMEYL-DEALAECDELESWLSLYDV-------------ELNSVRD- 65 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------------HHHHHHH-
Confidence 5677889999999999999888844 455555565554 3333333333322222222 2222222
Q ss_pred hhHhhhhhhhhhhhh-hhhhhhHHHHHHHHHHHHHHhh
Q 006350 392 LREERVQMKLSEAKY-HFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 392 WREERVQMKL~eAk~-~leeK~s~vdkL~~elE~FL~s 428 (649)
+|..+|.+. .|+-+.+=-..|..||+.+|.+
T Consensus 66 ------di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~ 97 (701)
T PF09763_consen 66 ------DIEYIESQNNGLQVQSANQKLLLNELENLLDT 97 (701)
T ss_pred ------HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHh
Confidence 444444442 3344444445666666666665
No 210
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.63 E-value=3.1e+02 Score=28.78 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHh--hhcccHHHHHHHHHhhHHHHH
Q 006350 342 RAKDIMEQVCDELAR--GIGEDRAEFEELKRESAKVKE 377 (649)
Q Consensus 342 KaRellE~vCDELAk--gI~edkaEVe~LKres~k~~e 377 (649)
|+|+--+..|.|.-+ ..+--+.+|+.+..+..+..+
T Consensus 134 KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~ 171 (269)
T cd07673 134 KSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATE 171 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455556666655421 112235556655555555433
No 211
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=51.61 E-value=1.5e+02 Score=27.09 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006350 332 NAMKELESEKRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 332 ~alkelE~ERKaRellE~vCDELAkgI~ 359 (649)
++-++|+.+|+...+|-.|---|.-|-|
T Consensus 62 ~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 62 KLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445666677777777777666555543
No 212
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.28 E-value=3.1e+02 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 006350 308 LKRQTERLNKKLGKELAETKACLSNAMKELESEKRA-KDIMEQVCDEL 354 (649)
Q Consensus 308 ~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa-RellE~vCDEL 354 (649)
.++.+|.++.|+.+ ++....++|+.|+..+.. -+-|..+|+.|
T Consensus 155 t~k~leK~~~k~~k----a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 155 TQREIEKAAVKSKK----ATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777655 455566777777655441 23455666655
No 213
>PRK14147 heat shock protein GrpE; Provisional
Probab=51.25 E-value=97 Score=30.85 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
.-+..|..+|+..+.++.+|...-.....+++.+.|++..|+...+ ...+.+
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~----------------------------~~a~~~ 69 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQAR----------------------------KFANEK 69 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 3345577888888888888876666666777777777766644322 234567
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006350 319 LGKELAETKACLSNAMK 335 (649)
Q Consensus 319 L~~ELaE~Kss~~~alk 335 (649)
++++|-.+--.|..|+.
T Consensus 70 ~~~~lLpv~DnlerAl~ 86 (172)
T PRK14147 70 LLGELLPVFDSLDAGLT 86 (172)
T ss_pred HHHHHhhhhhHHHHHHh
Confidence 77777776666666653
No 214
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=50.99 E-value=2.9e+02 Score=28.48 Aligned_cols=45 Identities=29% Similarity=0.402 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 298 IAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKR 342 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERK 342 (649)
++..||.|+.-.++.|.=|+|+...|.|-+.=.+.++--|-+|++
T Consensus 146 Lkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~E~k 190 (192)
T PF09727_consen 146 LKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667899999999999999999988888877777777777777765
No 215
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=50.69 E-value=1.6e+02 Score=25.50 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 252 RVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLS 331 (649)
Q Consensus 252 R~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~ 331 (649)
|.+|+++..+....-+++..++++|..- ...+-.-+..-....||.+++..+-..|.
T Consensus 32 R~~i~~~~~~~~~l~k~~~~~l~~l~~~-----------------------~~~~~~~~~~k~~~~KL~~df~~~l~~fq 88 (102)
T PF14523_consen 32 REKIHQLIQKTNQLIKEISELLKKLNSL-----------------------SSDRSNDRQQKLQREKLSRDFKEALQEFQ 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555433 11222233444556788888888877777
Q ss_pred HHHHHHHHHH
Q 006350 332 NAMKELESEK 341 (649)
Q Consensus 332 ~alkelE~ER 341 (649)
++.+.+..-.
T Consensus 89 ~~q~~~~~~~ 98 (102)
T PF14523_consen 89 KAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777765433
No 216
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.68 E-value=3.6e+02 Score=29.25 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAK 344 (649)
Q Consensus 288 ~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaR 344 (649)
...++.-.+.|+.|+...+..- +-++..=..||..+|..+.....+++.-++.-
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~---~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLE---DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666544443 33333335667777777777777776666543
No 217
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.41 E-value=4.4e+02 Score=30.21 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 006350 286 KERERIREAISCIA---------EELEVEKKLKRQTERLNKKLGK 321 (649)
Q Consensus 286 KE~eki~aai~slk---------~ELe~ERk~Rrr~E~lnrKL~~ 321 (649)
++.+.++..|+.|. +||+.|++.=.+.|.+...+..
T Consensus 189 ~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~ 233 (563)
T TIGR00634 189 QRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQN 233 (563)
T ss_pred HHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44555555555554 3466666655555555554443
No 218
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.24 E-value=4.9e+02 Score=30.66 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHhhHH
Q 006350 306 KKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARG---IGEDRAEFEELKRESAK 374 (649)
Q Consensus 306 Rk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkg---I~edkaEVe~LKres~k 374 (649)
+.++.+++.++.++..|+..+..++.. +++..+.....|+.--+++-.. +...+.|...|.|+.+-
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~~~~~~~~---~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~ 387 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQKITKSLLM---QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAA 387 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH
Confidence 346777788888888887776655543 3443333333444444444333 33456666777776543
No 219
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=50.05 E-value=2.8e+02 Score=27.88 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred cccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHH-----HHHHHHHHhhchhHHHHHHHHhHHHH
Q 006350 206 RLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQ-----VDQLIKEQCLNHSEIEYLMKHFAEEK 280 (649)
Q Consensus 206 rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~-----I~eL~~E~~s~~~eie~L~KqlaEEK 280 (649)
.+.+....-.+++||-.+|-+|- -+...|..+|..--.. |..|+..-....+.|..+.|.+..|
T Consensus 42 ki~~~A~~s~~s~~lG~~L~~~s----------~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke- 110 (219)
T PF08397_consen 42 KIGDMASNSRGSKELGDALMQIS----------EVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKE- 110 (219)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCccccHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 006350 281 AAWRRKERERIREAISCIAEEL-EVEKKLKR-------QTERLNKKLGKELAETKACLSNAMKE--LESEKRAKDIMEQV 350 (649)
Q Consensus 281 ~awKsKE~eki~aai~slk~EL-e~ERk~Rr-------r~E~lnrKL~~ELaE~Kss~~~alke--lE~ERKaRellE~v 350 (649)
..+..+.|.-...|+ .-.||.++ .+...-.-+.....+......+++++ +|..||=+-+++.+
T Consensus 111 -------~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~ 183 (219)
T PF08397_consen 111 -------YKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKH 183 (219)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 006350 351 C 351 (649)
Q Consensus 351 C 351 (649)
|
T Consensus 184 ~ 184 (219)
T PF08397_consen 184 C 184 (219)
T ss_dssp H
T ss_pred H
No 220
>PRK14163 heat shock protein GrpE; Provisional
Probab=49.87 E-value=3.1e+02 Score=28.54 Aligned_cols=64 Identities=6% Similarity=0.155 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 304 (649)
+..|+.+|+..+..+.+|...-.....+++.+.|+...|+..-+.--.+++-..|-.+-+.|+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLer 105 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGR 105 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 4567778888888888887777777888899999888887776666666666666556555543
No 221
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=49.84 E-value=2.7e+02 Score=27.58 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=53.5
Q ss_pred cchhhh--HHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHH
Q 006350 212 SGLTAS--KELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERE 289 (649)
Q Consensus 212 ~~L~TS--~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~e 289 (649)
|.|.++ +|+=+++.+- |.+ --..=|++|=..-..|+-+.++-.+...|-..-+.+.+.|..+...+|..++..|.+
T Consensus 2 y~lA~~Ig~EfE~lId~~-G~e-~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~ 79 (158)
T PF09744_consen 2 YDLASSIGKEFERLIDRY-GEE-AVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEE 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHh-Chh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 6777777665 222 222445655555556777777766666666666777788888888777776666543
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006350 290 RIREAISCIAEELEVEKK 307 (649)
Q Consensus 290 ki~aai~slk~ELe~ERk 307 (649)
-+ .+-+.++.|++
T Consensus 80 l~-----~~Ed~~~~e~k 92 (158)
T PF09744_consen 80 LL-----ELEDQWRQERK 92 (158)
T ss_pred HH-----HHHHHHHHHHH
Confidence 32 23445555543
No 222
>PRK14153 heat shock protein GrpE; Provisional
Probab=49.69 E-value=2.2e+02 Score=29.15 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR 285 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs 285 (649)
+.++..||+..+.++.+|...-.....+++.+.|....|+...+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~ 79 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRK 79 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777666666666777777777666544333
No 223
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.29 E-value=3.1e+02 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESE 340 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~E 340 (649)
++.-|.+|..||..++.-+..+-.+++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665554444444433
No 224
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.01 E-value=2.4e+02 Score=26.76 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTER 314 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ 314 (649)
.=+.+|..+|+..-..+.+|.+++. ++...+..|..+..+.-. --.-+.+-|.++...|+.||-.+-.++.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd----~L~~~l~~L~~q~~s~~q-r~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKD----QLRNALQSLQAQNASRNQ-RIAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478899999999999999977764 466667777666655433 3345667777777777776655544443
No 225
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=49.01 E-value=2.4e+02 Score=28.24 Aligned_cols=68 Identities=29% Similarity=0.427 Sum_probs=46.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 271 YLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQV 350 (649)
Q Consensus 271 ~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~v 350 (649)
..+++.-+||...|..|.++- .+.|-+.|+++.+.-+.+-+.+..|....+ .|+.+..+|...|++.+
T Consensus 61 ~ai~~QieEk~r~k~~E~err------~~EE~~EE~Rl~rere~~q~~~E~E~~~~~------~KEe~~~~k~~~l~e~~ 128 (157)
T PF15236_consen 61 RAIKQQIEEKRRQKQEEEERR------RREEEEEEERLAREREELQRQFEEEQRKQR------EKEEEQTRKTQELYEAM 128 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 445555567766666666554 467778888888888888888888777544 45666667776666543
No 226
>PRK14155 heat shock protein GrpE; Provisional
Probab=48.98 E-value=3e+02 Score=28.44 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
..|..+|+..+.++.+|........-+++.+.|+...|+...+.---+++-..|-.+.+-|+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLe 77 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLG 77 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHH
Confidence 56777888888888888777777777888888888877766555555555544444444443
No 227
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=48.98 E-value=2.7e+02 Score=27.26 Aligned_cols=20 Identities=5% Similarity=0.170 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 006350 339 SEKRAKDIMEQVCDELARGI 358 (649)
Q Consensus 339 ~ERKaRellE~vCDELAkgI 358 (649)
.=|..++-|...|.+.-..|
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444554454444444
No 228
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=48.91 E-value=3.3e+02 Score=28.24 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 308 LKRQTERLNKKLGKELAETKACLSNAMKELESEK 341 (649)
Q Consensus 308 ~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ER 341 (649)
+|++.-..+.+|..||..+-..+.++.+.|++.-
T Consensus 106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~ 139 (237)
T cd07657 106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLL 139 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665555555555555555443
No 229
>PLN02372 violaxanthin de-epoxidase
Probab=48.81 E-value=2e+02 Score=32.99 Aligned_cols=60 Identities=33% Similarity=0.479 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEV-EKKLKRQTERLNKK--LGKELAETKACLSNAMKELESEKRAKDIMEQV 350 (649)
Q Consensus 288 ~eki~aai~slk~ELe~-ERk~Rrr~E~lnrK--L~~ELaE~Kss~~~alkelE~ERKaRellE~v 350 (649)
+..|+. +..+..||+. -+++++..+.+=.+ |+..|.+++.-..+++++|-+|-+ ++|+++
T Consensus 375 ~~i~~e-~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~--~~l~~~ 437 (455)
T PLN02372 375 KTIVKE-ARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEK--ELLEKL 437 (455)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHH
Confidence 333443 3445556654 46788889999999 999999999999999998877654 444443
No 230
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.75 E-value=2.1e+02 Score=25.89 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 244 IRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKEL 323 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~EL 323 (649)
+..+|+.-+..+..++..-.....+++.--.+|.+....-.. --....+-........+.|++.+...+.-=.+|..+|
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~-flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDK-FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444454444444443221110 0000011112234456778888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 324 AETKACLSNAMKELESEKRAKDIMEQVCDE 353 (649)
Q Consensus 324 aE~Kss~~~alkelE~ERKaRellE~vCDE 353 (649)
..+++-..+.-..++.=.+=...|+.|.+.
T Consensus 91 ~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~ 120 (126)
T PF13863_consen 91 EELKSEISKLEEKLEEYKKYEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888888888888888888887653
No 231
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.68 E-value=3.8e+02 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHhhhHhhhHhhhhhhhhhhhhhhhhh
Q 006350 385 MLQLADVLREERVQMKLSEAKYHFEEK 411 (649)
Q Consensus 385 MLqmAEvWREERVQMKL~eAk~~leeK 411 (649)
=.|+..+.+-==.+.+|++||+.-...
T Consensus 155 E~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 155 EEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345555555555666777777654433
No 232
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=48.62 E-value=3.4e+02 Score=28.32 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=8.6
Q ss_pred eeeccCCCCCCceec
Q 006350 491 IELNMDNGSRSYKWS 505 (649)
Q Consensus 491 iELNmdg~sksykws 505 (649)
|||.++|-. ..|+
T Consensus 221 iel~~~~~~--i~ws 233 (250)
T PRK14474 221 IELKTEGYK--IAWT 233 (250)
T ss_pred eEEecCCce--Eecc
Confidence 888887554 4555
No 233
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=48.06 E-value=2.1e+02 Score=27.26 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 006350 237 GITLISAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 237 ~~Slv~aLk~EL~~AR~~I~eL~~E 261 (649)
|-..|-||--||++++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577999999999999999999877
No 234
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.60 E-value=3.1e+02 Score=27.56 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHhhHHHH
Q 006350 359 GEDRAEFEELKRESAKVK 376 (649)
Q Consensus 359 ~edkaEVe~LKres~k~~ 376 (649)
..|-+.|+.|+++...+.
T Consensus 131 ~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 131 ENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 345566666666555444
No 235
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.59 E-value=86 Score=37.16 Aligned_cols=48 Identities=33% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
+|+..++++++--|.|||-.|. ||--+|.++...+|+||+...+.+-|
T Consensus 82 ~e~~RI~~sVs~EL~ele~krq----------el~seI~~~n~kiEelk~~i~~~q~e 129 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQ----------ELNSEIEEINTKIEELKRLIPQKQLE 129 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444544433 34455666666666666655544433
No 236
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.50 E-value=2.9e+02 Score=27.31 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
....-+..|+.++..-..+|.+|..+....+.++..|--.|.+ |.|-.+.+.+.+.++.-++..=-.-.++++.=
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e-----k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE-----KNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777778888888888888877777776666554444 44556677777777776665544444566666
Q ss_pred HHHHHHHHHHHH
Q 006350 316 NKKLGKELAETK 327 (649)
Q Consensus 316 nrKL~~ELaE~K 327 (649)
|..|+.-+-+-|
T Consensus 174 n~~Lv~Rwm~~k 185 (194)
T PF08614_consen 174 NRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
No 237
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=47.20 E-value=9.1 Score=44.62 Aligned_cols=103 Identities=32% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhH---HHHHHHHHhHHHHhhhHhh
Q 006350 316 NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESA---KVKEEMEKEREMLQLADVL 392 (649)
Q Consensus 316 nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~---k~~eE~eeER~MLqmAEvW 392 (649)
+.-++.++++++.-+...-.++++--.++.-++.-|.++-++|.+.+.++++|..... ..++|++ +|
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD----------~l 303 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELD----------EL 303 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HH
Confidence 3445666777777666666666654445666677777777777777777766664433 3334432 33
Q ss_pred hHh------------hhhhhhhhhhh------hhhhhhHHHHHHHHHHHHHHhh
Q 006350 393 REE------------RVQMKLSEAKY------HFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 393 REE------------RVQMKL~eAk~------~leeK~s~vdkL~~elE~FL~s 428 (649)
|+. +-.-||.|..+ .|++.|..+-.-...||.=|..
T Consensus 304 R~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 304 REKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22335554442 4566666655555555555543
No 238
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.05 E-value=7.2e+02 Score=31.72 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKE 322 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~E 322 (649)
||+.+|+ +|.....|. |.|+. +++.+..+.. -..++|.++---+..|.+++..+-+.-..+|-+-++|-.|
T Consensus 374 alkllLE-nrrlt~tle-elqss--s~Ee~~SK~l-----eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E 444 (1195)
T KOG4643|consen 374 ALKLLLE-NRRLTGTLE-ELQSS--SYEELISKHL-----ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFE 444 (1195)
T ss_pred HHHHHHH-hHHHHHHHH-HHhhh--hHHHHHHHHH-----HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 333343333 33333 4555554433 3456677777778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 323 LAETKACLSNAMKELESEKRAKDIM 347 (649)
Q Consensus 323 LaE~Kss~~~alkelE~ERKaRell 347 (649)
+..+.-.....-+-|+++.+.++.+
T Consensus 445 ~ekl~~e~~t~~~s~~rq~~e~e~~ 469 (1195)
T KOG4643|consen 445 LEKLLEETSTVTRSLSRQSLENEEL 469 (1195)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 9988888877777777774444433
No 239
>PLN03188 kinesin-12 family protein; Provisional
Probab=46.66 E-value=7.9e+02 Score=32.02 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA--EEKAAWRRKERERIREAISCIAEE 301 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla--EEK~awKsKE~eki~aai~slk~E 301 (649)
++.+|+--|+.||+.-.....||..--|+.=.--.+++.|++ +||-..=---|-+|...|.+||..
T Consensus 1076 s~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkka 1143 (1320)
T PLN03188 1076 ASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKA 1143 (1320)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999998777776666677888887 466555555577777777777653
No 240
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.34 E-value=2.6e+02 Score=28.15 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhccccccC-cch-hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHH
Q 006350 218 KELLKVLNRIWGIEEQHS-SGI-TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKER 288 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~~-s~~-Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~ 288 (649)
.+|-.+|.++= +|++- ..+ .+-.-|+..|++|+.....|..+-+....+.+.+...|...-..|+..++
T Consensus 60 ~dLe~~l~rLe--EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 60 PDLEEALIRLE--EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred ccHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444888873 55554 333 34455889999999999999999999999999999999988888886443
No 241
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=46.17 E-value=2.6e+02 Score=26.25 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=64.5
Q ss_pred hhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006350 216 ASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAI 295 (649)
Q Consensus 216 TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai 295 (649)
|..||-..|+.= ..-+.-..+++-|..+..+++...+.+.+|...--..+.+++.+..++.+-... -..+....
T Consensus 5 S~~eL~~Ll~d~-~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~-----~~~L~~~~ 78 (150)
T PF07200_consen 5 STEELQELLSDE-EKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEE-----LKELESEY 78 (150)
T ss_dssp TTHHHHHHHHH--HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHcCH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 445666555543 122223355666888999999999999988887777777777777666633221 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 296 SCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 296 ~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
+... ++...+..+..-.- ++.-|.. +-.-.|+.|++||...-+.+-.|..+-++
T Consensus 79 ~~k~----------~~~~~l~~~~s~~~--l~~~L~~----------~~~e~eeeSe~lae~fl~g~~d~~~Fl~~ 132 (150)
T PF07200_consen 79 QEKE----------QQQDELSSNYSPDA--LLARLQA----------AASEAEEESEELAEEFLDGEIDVDDFLKQ 132 (150)
T ss_dssp HHHH----------HHHHHHHHCHHHHH--HHHHHHH----------HHHHHHHHHHHHC-S-SSSHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHccCCHHH--HHHHHHH----------HHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1111 12222222222111 1111222 23335678999999988888888887554
No 242
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=46.14 E-value=2.3e+02 Score=33.11 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 296 SCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIM 347 (649)
Q Consensus 296 ~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRell 347 (649)
..|+-|+-+||.+| |+|.+-|+.|+.-- ...-|.|.+|||+|..+
T Consensus 531 ~ELkmd~lrerelr---eslekql~~ErklR----~~~qkr~kkEkk~k~k~ 575 (641)
T KOG3915|consen 531 TELKMDFLRERELR---ESLEKQLAMERKLR----AIVQKRLKKEKKAKRKL 575 (641)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45778888888888 55666777655432 22334455566655443
No 243
>PRK14148 heat shock protein GrpE; Provisional
Probab=45.92 E-value=3.5e+02 Score=27.72 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
.-+.+|..+|...+..+.+|...-....-+++.+.|+...|+...+.--.+++-..|-.+-+-|
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~Dnl 103 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSI 103 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3366677777777777777776666666677777777776655544444444444333333333
No 244
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=45.14 E-value=4e+02 Score=28.16 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E 261 (649)
+..++++|..|++++..+.+.
T Consensus 88 l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 88 VAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666677676666655433
No 245
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.81 E-value=2.2e+02 Score=29.52 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHH
Q 006350 317 KKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVK 376 (649)
Q Consensus 317 rKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 376 (649)
..|-.+|+..+.-.....+-.|++++.|+--|+--|||++.....+.+++.||-+..+.+
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555444444555678899999999999999999998888888888888777765
No 246
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=44.71 E-value=3.4e+02 Score=28.20 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 006350 286 KERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365 (649)
Q Consensus 286 KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 365 (649)
.+-+.+...++.++...+.-..+|.++..+-..++.++.........+-+.+.+.-+ .+...|-.++..+.+.-.+|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777666655555555554333 36677777777665444444
Q ss_pred HHH
Q 006350 366 EEL 368 (649)
Q Consensus 366 e~L 368 (649)
..+
T Consensus 145 ~~l 147 (256)
T PF14932_consen 145 SKL 147 (256)
T ss_pred HHH
Confidence 443
No 247
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=44.69 E-value=4.7e+02 Score=29.85 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 270 EYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 270 e~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
+.|-.++.+.+.+-+...-.-|.+.+..++.-|+
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~ 191 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLK 191 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555554444
No 248
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.01 E-value=6.6e+02 Score=31.14 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQL 258 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL 258 (649)
-.+--|+.|-.+-|.|++=|
T Consensus 387 LA~QplrsENaqLrRrLril 406 (861)
T PF15254_consen 387 LAMQPLRSENAQLRRRLRIL 406 (861)
T ss_pred hhhhhhhhhhHHHHHHHHHH
Confidence 44888888888888877655
No 249
>PRK04654 sec-independent translocase; Provisional
Probab=43.95 E-value=1.6e+02 Score=30.80 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESEKRA 343 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~ERKa 343 (649)
+=.+=|.|++=+.++|..+..+..++++|-+.
T Consensus 25 LPe~aRtlGk~irk~R~~~~~vk~El~~El~~ 56 (214)
T PRK04654 25 LPKAARFAGLWVRRARMQWDSVKQELERELEA 56 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33455666776777777777777777766553
No 250
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=43.91 E-value=26 Score=41.06 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHhh
Q 006350 409 EEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 409 eeK~s~vdkL~~elE~FL~s 428 (649)
.-|-+.|+.|+.|.+.-+..
T Consensus 562 ~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 562 QIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999886543
No 251
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.87 E-value=3.3e+02 Score=26.88 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 299 AEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKR--AKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 299 k~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERK--aRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
.+.|+.=.+.++.++.+-...-..|.+++.-..+.+.+...+-+ ..+++++.=.|.++.+.+-+++++..|.+
T Consensus 68 ~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~ 142 (181)
T PRK13454 68 TNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAG 142 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555554444444422211 22334444344444444444444444443
No 252
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=43.82 E-value=58 Score=30.79 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERE 289 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~e 289 (649)
+..|+.+|...+.++.+|...-.....+++.+.+++..++...+....+
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~ 61 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALE 61 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666665555555555566666655555444433333
No 253
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.55 E-value=3.1e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHH
Q 006350 351 CDELARGIGEDRAEFEELKRESAKVKEEMEKEREM 385 (649)
Q Consensus 351 CDELAkgI~edkaEVe~LKres~k~~eE~eeER~M 385 (649)
|.+.-..+.+-+.+++.+........+.+.+...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 153 LQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444333333333
No 254
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=43.43 E-value=5.8e+02 Score=29.52 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 006350 305 EKKLKRQTERLNKK 318 (649)
Q Consensus 305 ERk~Rrr~E~lnrK 318 (649)
|+++.++.+.|.+|
T Consensus 82 E~rL~qRee~Lekr 95 (514)
T TIGR03319 82 ERRLLQREETLDRK 95 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 255
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=42.67 E-value=9e+02 Score=31.54 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 006350 331 SNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFE 366 (649)
Q Consensus 331 ~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe 366 (649)
-.++.++|++.+.+...+.+..+.-..|.++...++
T Consensus 916 ~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~ 951 (1294)
T KOG0962|consen 916 EEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLH 951 (1294)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655555555455544444433
No 256
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.62 E-value=3.9e+02 Score=27.37 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006350 218 KELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISC 297 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~s 297 (649)
++|.|.+.-.=.-| +.+|-.+|.. |.-+-+.|..+.+++ ++.+..+|.|.-..--. --.-+++++..
T Consensus 42 ~~fak~~~~la~~E-----~~~L~~~L~~-lae~~~~i~d~~q~q------v~~l~~~v~epLk~Y~~-l~k~~k~~~K~ 108 (211)
T cd07598 42 DELAKSINAYADTE-----NPSLKQGLKN-FAECLAALQDYRQAE------VERLEAKVVQPLALYGT-ICKHARDDLKN 108 (211)
T ss_pred HHHHHHHHHHHhcc-----CHHHHHHHHH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 67888887774333 4455555543 555556666555443 44444444443211100 00111111111
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 298 IAEELEVEKKLKRQTERL------NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCD 352 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~l------nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCD 352 (649)
...-=+.|.+.|+++|.+ |++ ++.+++..+.+|-.+++ |-.+.|.|+|..
T Consensus 109 ~~~ar~~~~~~~~~leklk~~~~~d~~---~i~eaE~~l~~a~~d~~--r~s~~l~ee~~r 164 (211)
T cd07598 109 TFTARNKELKQLKQLEKLRQKNPSDRQ---IISQAESELQKASVDAN--RSTKELEEQMDN 164 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhh---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 111223344455666666 332 67788888888888664 355555555554
No 257
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.62 E-value=3.9e+02 Score=27.35 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=18.8
Q ss_pred ccccccchhhhHHHHHHHHhhhccccccCcc
Q 006350 207 LKDVSSGLTASKELLKVLNRIWGIEEQHSSG 237 (649)
Q Consensus 207 l~e~~~~L~TS~ELlKVLnrIw~leeq~~s~ 237 (649)
+.-+..++.+-+||.+.|..-=.+|+..+..
T Consensus 11 ~~r~k~g~~~~~el~~f~keRa~IEe~Yak~ 41 (261)
T cd07648 11 YHNMKHGQIAVKELADFLRERATIEETYSKA 41 (261)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777775444567766643
No 258
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.59 E-value=1.7e+02 Score=35.46 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=9.7
Q ss_pred HHHHHHHhhhcc------cHHHHHH
Q 006350 349 QVCDELARGIGE------DRAEFEE 367 (649)
Q Consensus 349 ~vCDELAkgI~e------dkaEVe~ 367 (649)
+|=+||=+.|.+ .+.+||.
T Consensus 558 ~Lk~ei~kki~e~~~~~~~kek~ea 582 (762)
T PLN03229 558 KLKAEINKKFKEVMDRPEIKEKMEA 582 (762)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHH
Confidence 344555555555 5555553
No 259
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=42.49 E-value=1.7e+02 Score=34.48 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006350 306 KKLKRQTERLNKKLGKELAET 326 (649)
Q Consensus 306 Rk~Rrr~E~lnrKL~~ELaE~ 326 (649)
++||+..|.++.+..+||.+.
T Consensus 463 ~kL~~E~e~~q~~~~~~l~~~ 483 (588)
T KOG3612|consen 463 EKLRQEFEELQQTSRRELPVP 483 (588)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 356666777777777776443
No 260
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.27 E-value=5.2e+02 Score=28.64 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=9.5
Q ss_pred hhhcccHHHHHHHHHhhHHH
Q 006350 356 RGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 356 kgI~edkaEVe~LKres~k~ 375 (649)
++.+-...|.|.|+-+-.|+
T Consensus 390 reerrkqkeeeklk~e~qki 409 (445)
T KOG2891|consen 390 REERRKQKEEEKLKAEEQKI 409 (445)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 33444444555555554443
No 261
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.87 E-value=4.9e+02 Score=31.95 Aligned_cols=101 Identities=20% Similarity=0.168 Sum_probs=64.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 269 IEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIME 348 (649)
Q Consensus 269 ie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE 348 (649)
.+..+-++-|+..++-.++..++-....+++.++-.+..+--..+. ..|.-+|++-|..+.+.-.+.|+-.+.+-++|
T Consensus 491 ~~~~l~~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~--~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e 568 (809)
T KOG0247|consen 491 DKETLDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLES--QMLSSQLNDKKEQIEQLRDEIERLKKENLTTE 568 (809)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3344445555566666666666667777777777777666665555 67888888888888887766666655555555
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhhH
Q 006350 349 QVCDELARGIGEDRAEFEELKRESA 373 (649)
Q Consensus 349 ~vCDELAkgI~edkaEVe~LKres~ 373 (649)
.=-+=+-.. +++.+++.|..+.+
T Consensus 569 ~~~~i~E~~--~~~~~i~~l~~el~ 591 (809)
T KOG0247|consen 569 YSIEILEST--EYEEEIEALDQELE 591 (809)
T ss_pred hhhhhhhcc--hhhhhhHHHHHHHH
Confidence 432222222 67777777776644
No 262
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.82 E-value=4.2e+02 Score=27.51 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
+.+|+.+|...+..+.+|...-.....+++.+.|+.+.|+...+.--.+++-..|-.+-+-|
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnL 124 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNL 124 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 34455555555555555555445555556666666665555544444444443333333333
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.63 E-value=3.6e+02 Score=27.07 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=6.3
Q ss_pred hhhhHHHHHHH
Q 006350 214 LTASKELLKVL 224 (649)
Q Consensus 214 L~TS~ELlKVL 224 (649)
..+-+|+|+.|
T Consensus 29 ~~~VKdvlq~L 39 (188)
T PF03962_consen 29 SMSVKDVLQSL 39 (188)
T ss_pred hhhHHHHHHHH
Confidence 34456666665
No 264
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.40 E-value=6.9e+02 Score=29.82 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=30.9
Q ss_pred cCccccccccccchh--------hhHHHHHHHHhhhccccccCc---chhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006350 201 SGIKTRLKDVSSGLT--------ASKELLKVLNRIWGIEEQHSS---GITLISAIRAEVDRARVQVDQLIKEQCLN 265 (649)
Q Consensus 201 ~~~k~rl~e~~~~L~--------TS~ELlKVLnrIw~leeq~~s---~~Slv~aLk~EL~~AR~~I~eL~~E~~s~ 265 (649)
-++|.||.+...++. |..+|.--|+ ..+..... .==..++|+.-+..+++-+.++..-.+..
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~---e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMIN---EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 348888887766553 3345544444 22332221 11123345555666666555555444433
No 265
>PRK14141 heat shock protein GrpE; Provisional
Probab=41.17 E-value=4.3e+02 Score=27.40 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 244 IRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
|..+|+..+.++.+|...-....-+++.+.|+...|+...+..--+++-..|-.+.+-|+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLe 95 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLR 95 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 455666666666666666666667788888888888777766666666666666666554
No 266
>PRK11281 hypothetical protein; Provisional
Probab=41.01 E-value=3.3e+02 Score=34.52 Aligned_cols=29 Identities=21% Similarity=-0.015 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHS 267 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~ 267 (649)
+..-.|.+|+..-.+++.-+.+|..++..
T Consensus 192 ~~~~~l~ae~~~l~~~~~~~~~~l~~~~~ 220 (1113)
T PRK11281 192 SQRVLLQAEQALLNAQNDLQRKSLEGNTQ 220 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 44666777777777777777666665544
No 267
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=40.13 E-value=2.5e+02 Score=26.73 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhc
Q 006350 343 AKDIMEQVCDELARGIG 359 (649)
Q Consensus 343 aRellE~vCDELAkgI~ 359 (649)
.++..|.+|..+++-|.
T Consensus 120 ~~~~~e~~~~~~~~ria 136 (139)
T PF13935_consen 120 QAEAYEGEIADYAKRIA 136 (139)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666553
No 268
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=39.97 E-value=98 Score=35.66 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
++-|+.-|+||.||..=-.. |-++-. ..|.-|+.+||.|+++|-++|.--.||-
T Consensus 568 k~s~delr~qi~el~~ive~-------lk~~~~---------------kel~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEA-------LKKDHG---------------KELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHHH---------------HHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 55578889999998753322 222111 1244567788888888877776444443
No 269
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=39.73 E-value=4.9e+02 Score=27.62 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=73.7
Q ss_pred cccccccchhhhHHHHHHHHhhhcccc-ccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHH
Q 006350 206 RLKDVSSGLTASKELLKVLNRIWGIEE-QHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWR 284 (649)
Q Consensus 206 rl~e~~~~L~TS~ELlKVLnrIw~lee-q~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awK 284 (649)
.|++.-..=-+|+||-.||-+|-..-- -+..-.-++++...||-. +|++--..+-+-|..-.|++.-|
T Consensus 52 Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~------~LE~k~elD~kyi~a~~Kkyq~E----- 120 (226)
T cd07645 52 KIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIA------ELERKTDLDVKYMTATLKRYQTE----- 120 (226)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344444444477888888888841110 011112346666666633 55554444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 285 RKERERIREAISCIAEELE--------------VEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQV 350 (649)
Q Consensus 285 sKE~eki~aai~slk~ELe--------------~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~v 350 (649)
|.-=.+.++--+.||. +|-|--+-+|.++.|=+.=-.=+..++..|| +|..||=+-|+|.-
T Consensus 121 ---~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~~~q~el~~f~~~~~k~AL--~EErRRycFlvdkh 195 (226)
T cd07645 121 ---HKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVTSRQSDIQKFIADGCREAL--LEEKRRFCFLVDKH 195 (226)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 2222223333333332 1222223334455443322223344555555 56778889999999
Q ss_pred HHHHHhhhcccHHHHHHHHHh
Q 006350 351 CDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 351 CDELAkgI~edkaEVe~LKre 371 (649)
|- |++-+--|=.....|-..
T Consensus 196 C~-~~~~~~~yh~k~~~lL~~ 215 (226)
T cd07645 196 CS-FSNHIHYFHQQAAELLNS 215 (226)
T ss_pred HH-HHHHHHHHHHHHHHHHHh
Confidence 94 667666665555555443
No 270
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=39.65 E-value=2.6e+02 Score=31.67 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=84.3
Q ss_pred ccccchhhhHHHHHHHHhhhccccccC-cchhHHHHHHHHHHHH--------HHHHHHHHHHHhhchhHHHHHHHH----
Q 006350 209 DVSSGLTASKELLKVLNRIWGIEEQHS-SGITLISAIRAEVDRA--------RVQVDQLIKEQCLNHSEIEYLMKH---- 275 (649)
Q Consensus 209 e~~~~L~TS~ELlKVLnrIw~leeq~~-s~~Slv~aLk~EL~~A--------R~~I~eL~~E~~s~~~eie~L~Kq---- 275 (649)
+..|-|+ ....++|.=+.+|.+.+. .+-|=+..|-.+|.+. ..+|.+|++++....+||+.|-.-
T Consensus 93 e~~y~lT--~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ 170 (478)
T PF11855_consen 93 EEHYELT--PAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPV 170 (478)
T ss_pred CeeEEeC--HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 3445554 456788888888877765 7778888888888875 468999999999999999888543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 276 FAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAET 326 (649)
Q Consensus 276 laEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~ 326 (649)
+.++ +-.|++..+++-+++=+.|=|+.+...+.+|+.|-..+.+-
T Consensus 171 ld~~------~~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~~ 215 (478)
T PF11855_consen 171 LDDT------QARERARQILQLARELPADFRRVEDNFRELDRALRERIIDW 215 (478)
T ss_pred CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2333 33688888888888888888999999999999998777653
No 271
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.60 E-value=4.3e+02 Score=26.91 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=55.2
Q ss_pred hhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006350 216 ASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAI 295 (649)
Q Consensus 216 TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai 295 (649)
+.-=|+-||+++. ++-+..=|+.=+..|..-+.+-...+.+.+.++.+..+.-..-+.+-++.|..+.
T Consensus 62 ~FliL~~lL~k~~------------~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar 129 (204)
T PRK09174 62 TFGLFYLFMSRVI------------LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAR 129 (204)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777753 3334444777888888888888888889999988888887777777777666666
Q ss_pred HHHHHHHHHHH
Q 006350 296 SCIAEELEVEK 306 (649)
Q Consensus 296 ~slk~ELe~ER 306 (649)
...+.+.+.++
T Consensus 130 ~ea~~~~e~~~ 140 (204)
T PRK09174 130 EAAKAKAEAER 140 (204)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 272
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=39.43 E-value=4.1e+02 Score=31.46 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=48.9
Q ss_pred ccccccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 006350 203 IKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMK 274 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~K 274 (649)
|+.-+.-+..-|.|+++|-|-+.---++.|+. |-.|++..+-||.+|+.|++.+.-..|.+-+|.-
T Consensus 574 ~~~~~eRLkmElst~kDlekG~Aeki~~me~E------i~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLts 639 (790)
T PF07794_consen 574 IVPGIERLKMELSTSKDLEKGYAEKIGFMEME------IGGLQADKQTARNQIHRLEQRREELSKRVMDLTS 639 (790)
T ss_pred ccchhhhhheeeccccchhhhhHhhhhhhhhh------hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335566778889999988665433677765 7789999999999999999988766666655543
No 273
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.35 E-value=4.7e+02 Score=27.35 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 273 MKHFAEEKAAWRRK-ERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELA 324 (649)
Q Consensus 273 ~KqlaEEK~awKsK-E~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELa 324 (649)
.|+.+.+|+-++++ -.+||-.|+++|.+=-..|.-+..+.+.+-.-|-.|+.
T Consensus 140 ~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~ 192 (230)
T cd07625 140 SKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERK 192 (230)
T ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677766554 26688888888887777777777788877777777664
No 274
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=38.99 E-value=6.5e+02 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 343 AKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 343 aRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
-++.+++.-.+=+++...-.++|..+-....++
T Consensus 144 f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~l 176 (448)
T COG1322 144 FREQLEQRIHESAEERSTLLEEIDRLLGEIQQL 176 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555544444444
No 275
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.66 E-value=7.2e+02 Score=29.31 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE 278 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE 278 (649)
++|..|+.+|...+.++.+|...-...+-.|-.+-.++++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~ 327 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLAD 327 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 6788888899888888888877655555555555555554
No 276
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=38.65 E-value=4.7e+02 Score=27.15 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=16.9
Q ss_pred ccCccccccccccchhhhHHHHHHHH
Q 006350 200 ISGIKTRLKDVSSGLTASKELLKVLN 225 (649)
Q Consensus 200 s~~~k~rl~e~~~~L~TS~ELlKVLn 225 (649)
+.||+.=++-+.+++.+-+||...|.
T Consensus 4 ~~Gy~~l~~r~~~g~~~~~el~~f~k 29 (240)
T cd07672 4 TGGYDCIIQHLNDGRKNCKEFEDFLK 29 (240)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566656666777777777766653
No 277
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=38.50 E-value=3.8e+02 Score=26.00 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHH----HHHHHHHHHHHH
Q 006350 220 LLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAW----RRKERERIREAI 295 (649)
Q Consensus 220 LlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~aw----KsKE~eki~aai 295 (649)
|+|-+..+ +++.+..=..-+.....-...|.....+..+.....+.+...++.....+.... ...-+..+...+
T Consensus 40 l~kpI~~~--l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~ 117 (174)
T PRK07352 40 GRGFLGKI--LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLK 117 (174)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 296 SCIAEELEVEK-KLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDEL 354 (649)
Q Consensus 296 ~slk~ELe~ER-k~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL 354 (649)
...+.+++.|+ +.+..+..---.|+-++++ +.+.+.=....-+.++++.|++|
T Consensus 118 ~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~------kil~~~l~~~~~~~li~~~i~~l 171 (174)
T PRK07352 118 QTAAADLSAEQERVIAQLRREAAELAIAKAE------SQLPGRLDEDAQQRLIDRSIANL 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHcCHHHHHHHHHHHHHhh
No 278
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=38.41 E-value=4e+02 Score=32.00 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 335 KELESEKRAKDIMEQ 349 (649)
Q Consensus 335 kelE~ERKaRellE~ 349 (649)
+-||+||-.|+.||.
T Consensus 663 QrLERErmErERLEr 677 (940)
T KOG4661|consen 663 QRLERERMERERLER 677 (940)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666553
No 279
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=38.31 E-value=3.9e+02 Score=26.16 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhHH
Q 006350 250 RARVQVDQLIKEQCLNHSEIEYLMKHFAE 278 (649)
Q Consensus 250 ~AR~~I~eL~~E~~s~~~eie~L~KqlaE 278 (649)
.=+..|..-+.+-...+.+.+.+..+..+
T Consensus 55 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 83 (184)
T CHL00019 55 NRKQTILNTIRNSEERREEAIEKLEKARA 83 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333444444444433
No 280
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=37.57 E-value=5.9e+02 Score=27.93 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=21.0
Q ss_pred hhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 388 LADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 388 mAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
+...|.+=.-+..-.-....- -=...++-+...|-.|+.+-+
T Consensus 153 ~~~a~~~y~d~a~n~a~~~~~-~~~~af~gm~dal~~fvttGk 194 (332)
T TIGR01541 153 ARSGLADYGETATNVASAAAQ-LATNAFGGMASNIAQMLTTGK 194 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhH
Confidence 445555444443333222211 113456777777777877644
No 281
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=37.53 E-value=11 Score=35.40 Aligned_cols=38 Identities=37% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 294 AISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLS 331 (649)
Q Consensus 294 ai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~ 331 (649)
.++.+..+|.-||=.|+++|.++.-|++||+.+|..+-
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l 103 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELL 103 (108)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999987654
No 282
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=37.50 E-value=7.4e+02 Score=29.10 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEVE 305 (649)
Q Consensus 288 ~eki~aai~slk~ELe~E 305 (649)
-+-+..||+++..=++.|
T Consensus 142 ~~~LekAl~~~~~i~~~E 159 (508)
T PF00901_consen 142 IEILEKALKSYGKIVKEE 159 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555544444444
No 283
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=37.24 E-value=9.2e+02 Score=30.11 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E 261 (649)
..+..+|...+..+.++...
T Consensus 619 ~~~~~~l~~~~~~~~~~~~~ 638 (1047)
T PRK10246 619 HELQGQIAAHNQQIIQYQQQ 638 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 284
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.11 E-value=4.8e+02 Score=26.75 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNK 317 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnr 317 (649)
.++..+--..++.+...+++..+..+..+++++.+-.+ ...+.+.++.+..|++.=+.-.++++..-.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e------------~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 13 ASSAAAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDE------------KQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006350 318 KLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGED 361 (649)
Q Consensus 318 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ed 361 (649)
.+-.|+++.+..+....+- ++.-.-+|.+++++|-.-|..|
T Consensus 81 ~q~~el~~L~~qi~~~~~~---~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 81 SQEQELASLEQQIEQIEET---RQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
No 285
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.88 E-value=4.5e+02 Score=29.71 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 332 NAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 332 ~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
-.+.-|+.||-..+.||+.-+++... ...|+..||++..-+
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTEL---HQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhH
Confidence 34556777888888999999988654 578888888876543
No 286
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=36.74 E-value=3.1e+02 Score=32.84 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 277 AEEKAAWRRKERERI 291 (649)
Q Consensus 277 aEEK~awKsKE~eki 291 (649)
.|++..+...|+.+|
T Consensus 615 kE~Rr~Re~eer~Ri 629 (940)
T KOG4661|consen 615 KEERRRREAEERQRI 629 (940)
T ss_pred hhHHHhHHHHHHHHH
Confidence 344444444444444
No 287
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.67 E-value=2.8e+02 Score=23.97 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNK 317 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnr 317 (649)
-.++..|.-.|+....+|++|.+-|..-...|+.+...|.+-... +.+.+.+.-+. =..-=..+|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~------~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV------EQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 357888899999999999999999988888888877777655332 11111111111 11111246788888888
Q ss_pred HHH
Q 006350 318 KLG 320 (649)
Q Consensus 318 KL~ 320 (649)
++.
T Consensus 79 ~l~ 81 (92)
T PF14712_consen 79 RLQ 81 (92)
T ss_pred HHH
Confidence 864
No 288
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=36.54 E-value=3.8e+02 Score=25.44 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
..=|+.=+..|.+-+.+-...+.+++.+.++..+.-...+.+-+..+..++...+.|.+
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~ 91 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAE 91 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33366667778888777777778888877777766665555555555545444444433
No 289
>PF13514 AAA_27: AAA domain
Probab=36.42 E-value=9.5e+02 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE 278 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE 278 (649)
..++...+.+|..+.++......++..|...+..
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3556666667777777777777777777666543
No 290
>PRK10869 recombination and repair protein; Provisional
Probab=36.33 E-value=7.4e+02 Score=28.72 Aligned_cols=147 Identities=15% Similarity=0.076 Sum_probs=75.0
Q ss_pred ccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH-----------H
Q 006350 211 SSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE-----------E 279 (649)
Q Consensus 211 ~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE-----------E 279 (649)
+..|-....-+.+|..+-+. ..-..-+..+-.++..+..++.+|....+....+++.|--|+.| |
T Consensus 133 ~~~ll~~~~~~~lLD~~~~~----~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~e 208 (553)
T PRK10869 133 HQLLLKPEHQKTLLDAYANE----TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFE 208 (553)
T ss_pred HHHhcCHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence 34556666677777665322 11123344555666677777777777666666667777666552 1
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 280 KA---AWRRKERERIREAISCIAEELEV-E-KKLKRQTERLNKKLGKEL---AETKACLSNAMKELESEKRAKDIMEQVC 351 (649)
Q Consensus 280 K~---awKsKE~eki~aai~slk~ELe~-E-Rk~Rrr~E~lnrKL~~EL---aE~Kss~~~alkelE~ERKaRellE~vC 351 (649)
.+ ..+=.-.++|..+++.+-.-|.+ + --. +..|+.- .++| ++.-..|..+... =..+...||+++
T Consensus 209 eL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~---~~~l~~~-~~~l~~~~~~d~~~~~~~~~---l~~~~~~l~~~~ 281 (553)
T PRK10869 209 QIDEEYKRLANSGQLLTTSQNALQLLADGEEVNI---LSQLYSA-KQLLSELIGMDSKLSGVLDM---LEEALIQIQEAS 281 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH---HHHHHHH-HHHHHHHhhhCHhHHHHHHH---HHHHHHHHHHHH
Confidence 11 12223456777777777777754 2 111 2222211 1222 2222222222222 334666788888
Q ss_pred HHHHhhh---cccHHHHHHH
Q 006350 352 DELARGI---GEDRAEFEEL 368 (649)
Q Consensus 352 DELAkgI---~edkaEVe~L 368 (649)
++|-... .-|.++++++
T Consensus 282 ~~l~~~~~~~~~dp~~l~~i 301 (553)
T PRK10869 282 DELRHYLDRLDLDPNRLAEL 301 (553)
T ss_pred HHHHHHHhhcCCCHHHHHHH
Confidence 8887633 3344444443
No 291
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.18 E-value=9.3e+02 Score=30.17 Aligned_cols=128 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA----------EEKAAWRRKERERIREAISCIAEELEVEKKLKR 310 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla----------EEK~awKsKE~eki~aai~slk~ELe~ERk~Rr 310 (649)
.++|+.|-..-...|+++..+....+++++.|--||. ++..+-|.+..+--.+..+. +
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~------------k 747 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSEN------------K 747 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHH------------H
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhh----------hcccHHHHHHHH
Q 006350 311 QTERLNKKLGKEL---AETKACLSNAMK--------ELESEKRAKDIMEQVCDELARG----------IGEDRAEFEELK 369 (649)
Q Consensus 311 r~E~lnrKL~~EL---aE~Kss~~~alk--------elE~ERKaRellE~vCDELAkg----------I~edkaEVe~LK 369 (649)
+++.-+-.|.+|| ...-.++++.-. +.-.-+..-.++|..|+ |+.+ +..+|.++..|-
T Consensus 748 ~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t~~ 826 (970)
T KOG0946|consen 748 KLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEESTRLQELQSELTQLKEQIQTLL 826 (970)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHH
Q 006350 370 RESAKVKEEMEK 381 (649)
Q Consensus 370 res~k~~eE~ee 381 (649)
.+...+-+.++.
T Consensus 827 ~~tsa~a~~le~ 838 (970)
T KOG0946|consen 827 ERTSAAADSLES 838 (970)
T ss_pred HHHHhhhhhhHH
No 292
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.50 E-value=3.3e+02 Score=32.49 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhH
Q 006350 333 AMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLAD 390 (649)
Q Consensus 333 alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAE 390 (649)
-+++|-.-+..|+.+++....||+.|.+.+..-+.|.+...+++--.--+...|-+||
T Consensus 600 QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AE 657 (741)
T KOG4460|consen 600 QLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAE 657 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHH
Confidence 3444444455667889999999999988877777787777766544444444444554
No 293
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.10 E-value=5.5e+02 Score=26.88 Aligned_cols=13 Identities=31% Similarity=0.123 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 006350 295 ISCIAEELEVEKK 307 (649)
Q Consensus 295 i~slk~ELe~ERk 307 (649)
....+++|..||.
T Consensus 37 ~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 37 YRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444566777775
No 294
>PRK14144 heat shock protein GrpE; Provisional
Probab=34.98 E-value=2.7e+02 Score=28.66 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
+..|..+|......+.+|...-.....+.+.+.|....|+... ......+++
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~----------------------------~~~a~~~~~ 98 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANA----------------------------HKYGVEKLI 98 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 4456666666666666655444444445555544444443221 123456788
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 321 KELAETKACLSNAMK 335 (649)
Q Consensus 321 ~ELaE~Kss~~~alk 335 (649)
++|..+--.|..|+.
T Consensus 99 ~~LLpV~DnLerAl~ 113 (199)
T PRK14144 99 SALLPVVDSLEQALQ 113 (199)
T ss_pred HHHhhHHhHHHHHHH
Confidence 888887777777665
No 295
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=34.93 E-value=2.5e+02 Score=32.43 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 253 VQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSN 332 (649)
Q Consensus 253 ~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~ 332 (649)
.+|+.|..|-..++..+..--|+..|+ +..=+++|+..|...+.+.+||-+||.. +-++++
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek------------------~~qy~~Ee~~~reen~rlQrkL~~e~er-Realcr 313 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEK------------------LMQYRAEEVDHREENERLQRKLINELER-REALCR 313 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHH
Q 006350 333 AMKELES 339 (649)
Q Consensus 333 alkelE~ 339 (649)
.+-|-|.
T Consensus 314 ~lsEses 320 (552)
T KOG2129|consen 314 MLSESES 320 (552)
T ss_pred HhhhhhH
No 296
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.92 E-value=6.7e+02 Score=27.82 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006350 339 SEKRAKDIMEQVCDELA 355 (649)
Q Consensus 339 ~ERKaRellE~vCDELA 355 (649)
.||+.+.-.|++-+|+-
T Consensus 391 eerrkqkeeeklk~e~q 407 (445)
T KOG2891|consen 391 EERRKQKEEEKLKAEEQ 407 (445)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 45666666677777665
No 297
>PRK14161 heat shock protein GrpE; Provisional
Probab=34.75 E-value=4.9e+02 Score=26.22 Aligned_cols=60 Identities=10% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
.+..||+....++.+|...-....-+++.+.|+...|+...+.--.+++-..+-.+-+-|
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~Dnl 82 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNL 82 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 344445555555555544444445555555555555544444433333333333333333
No 298
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.47 E-value=1.6e+02 Score=25.77 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=37.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006350 235 SSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCI 298 (649)
Q Consensus 235 ~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~sl 298 (649)
...|--|..|++|++.-+.....|..+...-+. -..++.+|..+|+. +|++.|.-|
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~----en~~L~~e~~~~~~----rl~~LL~kl 69 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKE----ENEQLKQERNAWQE----RLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHhh
Confidence 456677889999999888888888866654444 44455577777743 555555444
No 299
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.70 E-value=1.5e+02 Score=29.04 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=12.8
Q ss_pred cHHHHHHHHHhhHHHHHH
Q 006350 361 DRAEFEELKRESAKVKEE 378 (649)
Q Consensus 361 dkaEVe~LKres~k~~eE 378 (649)
-+.++++||.+++....|
T Consensus 173 ~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667777888777766554
No 300
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=33.70 E-value=4.2e+02 Score=25.11 Aligned_cols=95 Identities=22% Similarity=0.197 Sum_probs=60.5
Q ss_pred hhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006350 214 LTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIRE 293 (649)
Q Consensus 214 L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~a 293 (649)
|.=||+|+.+==-.=-|-|||- +=+--|+.++-.+-.+|-+|+.... +...
T Consensus 6 LqISKeLVDLQIe~~rL~Eq~E---aE~FELk~~vL~lE~rvleLel~~~--------------------------~~~~ 56 (108)
T PF14739_consen 6 LQISKELVDLQIETNRLREQHE---AEKFELKNEVLRLENRVLELELHGD--------------------------KAAP 56 (108)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcc--------------------------hhhH
Confidence 4556777654111111356665 3477888888888888888876653 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 294 AISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAK 344 (649)
Q Consensus 294 ai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaR 344 (649)
.+.++.+.+ .-++...++|+.|+.-.+..+...-++++.|....
T Consensus 57 ~~~~~~~~~-------~~~~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~ 100 (108)
T PF14739_consen 57 QIADLRHRL-------AEAQEDRQELQEEYVSLKKNYQALPKAFEAEVAKN 100 (108)
T ss_pred HHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 222333222 23455778899999999999999999998887654
No 301
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=33.64 E-value=1.4e+02 Score=25.54 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKK 307 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk 307 (649)
-+..|+.++..+|..+..|+.-..-+...|+.+++.+.+-...- ...+...+-.+.+.|.-|.|
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l----~~~~~~~~~~~~~~LtpeQR 123 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAEL----RQERLEHLLEIRAVLTPEQR 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCHHHh
Confidence 47778888888888888888877777777777777666554332 33333344455555554443
No 302
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=33.51 E-value=7.5e+02 Score=27.95 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 301 ELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESE--KRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 301 ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~E--RKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
+|++=.+.+++++.+..+.-+.|.+++.-....+.+...+ +...+++++.=.|..+-+..-+++|+.-|+.. ..|
T Consensus 40 ~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a---~~e 116 (445)
T PRK13428 40 QLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQL---TRQ 116 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3333335667777776666666666666555555444332 22335566666666666655666555544432 223
Q ss_pred HHHh--HHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 006350 379 MEKE--REMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLG 427 (649)
Q Consensus 379 ~eeE--R~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~ 427 (649)
+..+ ...+++|+--..+. |.++ ..-..++|++..+|.+|=.
T Consensus 117 lr~ei~~lAv~~A~kil~~~----l~d~----~~~~~lId~~i~~l~~~~~ 159 (445)
T PRK13428 117 LRLELGHESVRQAGELVRNH----VADP----AQQSATVDRFLDELDAMAP 159 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHhhccCC
Confidence 3222 23344444332222 2111 1113667777777777533
No 303
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.50 E-value=5.8e+02 Score=26.63 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=13.8
Q ss_pred HHHhhhcccHHHHHHHHHhhHH
Q 006350 353 ELARGIGEDRAEFEELKRESAK 374 (649)
Q Consensus 353 ELAkgI~edkaEVe~LKres~k 374 (649)
.|+..|.++..+|..|..+..+
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ 100 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESER 100 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777765543
No 304
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.29 E-value=1.5e+02 Score=24.42 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 006350 237 GITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYL 272 (649)
Q Consensus 237 ~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L 272 (649)
.+.-+..++.|+...+.+|.+|.++....+.+++.|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344466777778888888888877777777777666
No 305
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=33.17 E-value=3.6e+02 Score=27.15 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR----KERERIREAISCIAEELEVEKKLKRQTERLNK 317 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs----KE~eki~aai~slk~ELe~ERk~Rrr~E~lnr 317 (649)
=.||++.|-+|++.+.+-..+- ....|+++|...+-+.++ .-..-|-++=..|+..|....-....+...|+
T Consensus 71 F~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~k 146 (157)
T PF04778_consen 71 FNELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNK 146 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4689999999999999995554 667889999887776553 22334444545555555543333333333333
No 306
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.63 E-value=6e+02 Score=27.97 Aligned_cols=85 Identities=19% Similarity=0.383 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAI--SCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai--~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
|.-|++-|-.+..++++ ..-||+.|..||+-=+.-|=-.|..||.|.+ ...+.|+ +.|++=.|.+-.-
T Consensus 70 iRHLkakLkes~~~l~d-------RetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEI---kQLkQvieTmrss 139 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHD-------RETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEI---KQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 67777777777777665 3358999999999999999999999999864 3444444 5677777877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006350 319 LGKELAETKACLSNAMKELES 339 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ 339 (649)
|+ |.-.-+.|+..|+--
T Consensus 140 L~----ekDkGiQKYFvDINi 156 (305)
T PF15290_consen 140 LA----EKDKGIQKYFVDINI 156 (305)
T ss_pred hc----hhhhhHHHHHhhhhh
Confidence 54 444555566666543
No 307
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=32.56 E-value=8.1e+02 Score=28.04 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=75.1
Q ss_pred ccccccccccchhhhHHHHHHH----HhhhccccccCc-chhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 203 IKTRLKDVSSGLTASKELLKVL----NRIWGIEEQHSS-GITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVL----nrIw~leeq~~s-~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
+|.++.++.--|++.+.-++-| .++|.++..... ...-+..|+..|..+..-|. .+.......+--|+++..
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~---~~~~~~~~~~~~fl~rtl 190 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK---REDGNAITAVVEFLKRTL 190 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHH
Confidence 5667777777777777777777 666644332110 01112566655555443332 222222222223333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 006350 278 EEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELE-SEKRAKDIMEQVCDELAR 356 (649)
Q Consensus 278 EEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE-~ERKaRellE~vCDELAk 356 (649)
+ +..++..+...+..+. .+-.+.+-...+..+..-|-.++...+.+| .+|. +..+.-..-|++-+.|=.
T Consensus 191 ~-----~e~~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el----~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 191 K-----KEIERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAEL----QQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred H-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHhcCHHHHHHHHHh
Confidence 2 2223333333333222 233333334444444444444454444443 3343 233333334445454544
Q ss_pred hhcc--cH-----HHHHHHHHhhHHHHHHHH
Q 006350 357 GIGE--DR-----AEFEELKRESAKVKEEME 380 (649)
Q Consensus 357 gI~e--dk-----aEVe~LKres~k~~eE~e 380 (649)
+... .. .|++.|+.|..-+++|+.
T Consensus 261 ~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~ 291 (511)
T PF09787_consen 261 GCLEEGFDSSTNSIELEELKQERDHLQEEIQ 291 (511)
T ss_pred cccccccccccchhcchhhHHHHHHHHHHHH
Confidence 2111 11 357888888888877754
No 308
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=32.43 E-value=1.1e+02 Score=27.48 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAA 282 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~a 282 (649)
|.-+..||++.++.|+.|++|--..+-.|-+|---||.||.+
T Consensus 28 vgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667899999999999999999988888888888888877654
No 309
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.40 E-value=8.6e+02 Score=28.30 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVE--KKLKRQTERLNKK 318 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~E--Rk~Rrr~E~lnrK 318 (649)
+..+..+|...+.++.++..+.......++...+.. +||.+.=.+-++++....+.|..++=+| ++.-.....-=.-
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~-~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ 140 (475)
T PRK10361 62 CELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA-DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNS 140 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHH
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEM 379 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ 379 (649)
|.+=|.|-=..|.+-+.+++.++. ++-...+.+|..|+.-+.++..|.
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~-------------~~~~~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEA-------------QERHTLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
No 310
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=31.95 E-value=8.9e+02 Score=28.34 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHH
Q 006350 245 RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEE 279 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEE 279 (649)
..+....+..|.++..+-+-..+.|+.|+.+|-.=
T Consensus 249 ~~~~~~~r~~i~~~l~~lkL~~k~id~Lv~~lr~~ 283 (619)
T PRK05658 249 HKKYAKLREKLKEELKSLRLTSKQIDELVEQLRDI 283 (619)
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999888543
No 311
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.87 E-value=5.6e+02 Score=26.00 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 259 IKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELE 338 (649)
Q Consensus 259 ~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE 338 (649)
+.+-..+.-+|..|...|.+ +.--.-.+.++......+..+++++.-..+++|..=.+|-..|.+.+-....+....|
T Consensus 78 l~~LE~~GFnV~~l~~RL~k--LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 78 LSELEEHGFNVKFLRSRLNK--LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHcCCccHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 339 SEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 339 ~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
..- ++|...+.+++.|+.+...+.-+.+.
T Consensus 156 ~~~--------------~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 156 AKD--------------KEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 312
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=31.76 E-value=7.2e+02 Score=27.26 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006350 288 RERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGI 358 (649)
Q Consensus 288 ~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI 358 (649)
+....+-++.+.+|++..|+.++..-.==.+|+.+..+..--+.++.++.+.=|+...-|-.-.-++...|
T Consensus 153 ~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~ 223 (294)
T COG1340 153 ALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKI 223 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566666665554443332222345555555555555555555555544433333333333333
No 313
>PRK09039 hypothetical protein; Validated
Probab=31.74 E-value=7.1e+02 Score=27.17 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 287 ERERIREAISCIAEELEVEKKLKRQTER 314 (649)
Q Consensus 287 E~eki~aai~slk~ELe~ERk~Rrr~E~ 314 (649)
|=+.+.+.|..+-+-|.-|+.....++.
T Consensus 54 eL~~L~~qIa~L~e~L~le~~~~~~l~~ 81 (343)
T PRK09039 54 ALDRLNSQIAELADLLSLERQGNQDLQD 81 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444444466666666654444433
No 314
>PRK04654 sec-independent translocase; Provisional
Probab=31.41 E-value=2.4e+02 Score=29.64 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 006350 293 EAISCIAEELEVEKKL 308 (649)
Q Consensus 293 aai~slk~ELe~ERk~ 308 (649)
..+.++++|+++|=++
T Consensus 41 ~~~~~vk~El~~El~~ 56 (214)
T PRK04654 41 MQWDSVKQELERELEA 56 (214)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 3455566666555443
No 315
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.32 E-value=5.3e+02 Score=25.58 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 290 RIREAISCIAEELEVEKKLKRQTE 313 (649)
Q Consensus 290 ki~aai~slk~ELe~ERk~Rrr~E 313 (649)
.+++...-+..+.+.|+.+|+++|
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e 77 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAE 77 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555
No 316
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.08 E-value=2.6e+02 Score=25.93 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAET 326 (649)
Q Consensus 247 EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~ 326 (649)
+|...+.+..++++++.....||+.|-..|-+|-- + +| ..||+-|-.+|.-|..|-++|.|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN-------~----MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEAN-------K----MV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888999999999999999998877621 1 11 567778888888888888888775
Q ss_pred H
Q 006350 327 K 327 (649)
Q Consensus 327 K 327 (649)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 317
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.97 E-value=1.3e+02 Score=28.66 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=29.7
Q ss_pred cccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 206 RLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQC 263 (649)
Q Consensus 206 rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~ 263 (649)
++++.+.+|+..++++...... + .....+..+++.-..+|.+|++...
T Consensus 51 ~lr~~G~sL~eI~~~l~~~~~~----~------~~~~~~~~~~~~l~~~i~~Le~~l~ 98 (134)
T cd04779 51 HLKGQRLSLAEIKDQLEEVQRS----D------KEQREVAQEVQLVCDQIDGLEHRLK 98 (134)
T ss_pred HHHHCCCCHHHHHHHHHhhccc----c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999888887654431 0 1133445556666666666655443
No 318
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=30.97 E-value=2.2e+02 Score=25.46 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 006350 348 EQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLG 427 (649)
Q Consensus 348 E~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~ 427 (649)
-.++..|.++..-|+.|+........++..+-..+-.+ ...+ +=|.|++.-|-+=..-|.....+|+.||.
T Consensus 6 t~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~i-Kkq~--------~vl~Et~~mipd~~~RL~~a~~~L~~~l~ 76 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDI-KKQE--------EVLEETKMMIPDCQQRLEKAVEDLEEFLE 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHH-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH-HHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888877777663333322 2222 22334445555556667777888899988
Q ss_pred hccC
Q 006350 428 TKKG 431 (649)
Q Consensus 428 sk~~ 431 (649)
...+
T Consensus 77 ~~~~ 80 (90)
T PF02970_consen 77 EEEG 80 (90)
T ss_dssp HHHC
T ss_pred HCcC
Confidence 7664
No 319
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.51 E-value=4.5e+02 Score=24.47 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 006350 330 LSNAMKELES 339 (649)
Q Consensus 330 ~~~alkelE~ 339 (649)
+..+++++=+
T Consensus 118 i~~~v~~~a~ 127 (158)
T PF03938_consen 118 INKAVEEYAK 127 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 320
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.31 E-value=1.1e+03 Score=28.85 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchh--HHHHHHH---HhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHS--EIEYLMK---HFAEEKAAWRR--KERERIREAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~--eie~L~K---qlaEEK~awKs--KE~eki~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
.+++|++..+.++..+.++.++... ..+..++ ++++.+-.-+. +...-+-+-++.+-...| .++..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~e-------d~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFE-------DMQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 4666777777777777666666554 4445555 33333322222 222222233333333333 37888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHH
Q 006350 316 NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKE 377 (649)
Q Consensus 316 nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~e 377 (649)
|.||.-||.+.--.--+.|.+..+-...-.+|.+-=+.|...|-..++-+..+.....+..+
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee 531 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE 531 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888778888777777777777766677777777666666666665555543
No 321
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=30.10 E-value=1.5e+02 Score=35.40 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 252 RVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKK 307 (649)
Q Consensus 252 R~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk 307 (649)
|+++..|.+|++. |+..+..+..+-|.. ...|=++++.+||. ||||||
T Consensus 3 RdkL~~Lq~ek~~---E~~~l~~~~~~lk~~-~~~el~~Lk~~vqk----LEDEKK 50 (654)
T PF09798_consen 3 RDKLELLQQEKQK---ERQALKSSVEELKES-HEEELNKLKSEVQK----LEDEKK 50 (654)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH-hHHHHHHHHHHHHH----HHHHHH
Confidence 6778888888765 455555554444433 23455677777777 677776
No 322
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=29.89 E-value=4.6e+02 Score=28.97 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccHHHHHHHHHhhHHHH
Q 006350 330 LSNAMKELESEKRAKDIME-QVCDELARGIGEDRAEFEELKRESAKVK 376 (649)
Q Consensus 330 ~~~alkelE~ERKaRellE-~vCDELAkgI~edkaEVe~LKres~k~~ 376 (649)
+.++++.||+=-.+++-+| +|-..|+.-+.+-|+.|+.|++....+.
T Consensus 160 ~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 160 ANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3345555555555555444 4667788888999999999988766554
No 323
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=29.46 E-value=1.2e+03 Score=29.13 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 216 ASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQ 262 (649)
Q Consensus 216 TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~ 262 (649)
+++|=-.+|.+|-+++--. -+-..|+.....++..+.+|..+.
T Consensus 165 ~~~eR~~il~~l~g~~~y~----~~~~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 165 KPKERAELLEELTGTEIYG----QISAMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred ChHHHHHHHHHHhCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888888887554322 344566666677777777777666
No 324
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.42 E-value=1.3e+03 Score=29.59 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVK 376 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 376 (649)
.||+-.-+.|......|...-..=+++-+=|.+|-..++.++.|-+-|-.+...+.
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35555555555555666666666777788888998888888888776666655544
No 325
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=29.25 E-value=6.7e+02 Score=26.10 Aligned_cols=135 Identities=25% Similarity=0.334 Sum_probs=69.0
Q ss_pred ccccccchhhhHHHHHHHHhhhccccccC-cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH
Q 006350 207 LKDVSSGLTASKELLKVLNRIWGIEEQHS-SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR 285 (649)
Q Consensus 207 l~e~~~~L~TS~ELlKVLnrIw~leeq~~-s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs 285 (649)
+.+...+..+|++|--+|-+|-..--.-. .--...++|..|| |..|++.-....+.|..+-|.+.-|
T Consensus 53 ia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~l------i~pLe~k~e~d~k~i~~~~K~y~~E------ 120 (223)
T cd07605 53 IGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGEL------ILPLEKKLELDQKVINKFEKDYKKE------ 120 (223)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHH------
Confidence 34443344477788888877742111000 1112344444444 4446666666666666666666544
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 006350 286 KERERIREAISCIAEELE-------------VEKKLKRQTERLNKKLGKELAETKACLSNAMKE--LESEKRAKDIMEQV 350 (649)
Q Consensus 286 KE~eki~aai~slk~ELe-------------~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alke--lE~ERKaRellE~v 350 (649)
+.+.++.|+-...||. .+-+++..+|.+|.|-. ||. .-..+.+++ +|..|+=.-+++..
T Consensus 121 --~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~-ele---~~~~~~lr~al~EERrRyc~lv~~~ 194 (223)
T cd07605 121 --YKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQK-ELE---AFVSQGLRDALLEERRRYCFLVDKH 194 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332 23334455777877743 232 233334443 34556667899999
Q ss_pred HHHHHhhhc
Q 006350 351 CDELARGIG 359 (649)
Q Consensus 351 CDELAkgI~ 359 (649)
|-=|=.++.
T Consensus 195 c~v~~~e~~ 203 (223)
T cd07605 195 CSVAKHEIA 203 (223)
T ss_pred HHHHHHHHH
Confidence 976655554
No 326
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.21 E-value=1.2e+03 Score=28.94 Aligned_cols=11 Identities=36% Similarity=0.133 Sum_probs=5.7
Q ss_pred HHHHHHHHhhh
Q 006350 218 KELLKVLNRIW 228 (649)
Q Consensus 218 ~ELlKVLnrIw 228 (649)
.||=|+-.+|-
T Consensus 346 ~eLdK~~~~i~ 356 (961)
T KOG4673|consen 346 LELDKTKKEIK 356 (961)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 327
>PF14992 TMCO5: TMCO5 family
Probab=29.16 E-value=4.6e+02 Score=28.49 Aligned_cols=40 Identities=35% Similarity=0.593 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhh
Q 006350 348 EQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMK 400 (649)
Q Consensus 348 E~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMK 400 (649)
-++|..=|.+|..||..++. +|++++|+.+--.|+ .+||.
T Consensus 143 ~~l~eDq~~~i~klkE~L~r-----------mE~ekE~~lLe~el~--k~q~~ 182 (280)
T PF14992_consen 143 HQLCEDQANEIKKLKEKLRR-----------MEEEKEMLLLEKELS--KYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH--HHhch
Confidence 34566667777777765533 445666666555443 45554
No 328
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.07 E-value=18 Score=42.20 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 006350 292 REAISCIAEELEV 304 (649)
Q Consensus 292 ~aai~slk~ELe~ 304 (649)
...++.+++||+.
T Consensus 290 A~~a~~LrDElD~ 302 (713)
T PF05622_consen 290 AREARALRDELDE 302 (713)
T ss_dssp -------------
T ss_pred HHHHHHHhhhHHH
Confidence 3344555555554
No 329
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=29.03 E-value=9e+02 Score=30.73 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=43.5
Q ss_pred hhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 263 CLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKR 342 (649)
Q Consensus 263 ~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERK 342 (649)
-+..++-..|++++... -++.|+. -..+++.-+.||+.|.=..+.-++.+.|....+..+++-...|.+ +
T Consensus 1085 ~~~e~e~kElk~~l~kk-------r~e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k--~ 1154 (1189)
T KOG1265|consen 1085 ESLEKETKELKKKLDKK-------RMEDIKV-DKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVK--K 1154 (1189)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 33344444455554432 2444553 345677777888777666665566666655555555554444433 3
Q ss_pred HHHHHHHHHHH
Q 006350 343 AKDIMEQVCDE 353 (649)
Q Consensus 343 aRellE~vCDE 353 (649)
--+.+|.+.++
T Consensus 1155 ~~~~leql~e~ 1165 (1189)
T KOG1265|consen 1155 HLEVLEQLAEE 1165 (1189)
T ss_pred HHHHHHHHHHh
Confidence 34455555444
No 330
>PRK01919 tatB sec-independent translocase; Provisional
Probab=28.97 E-value=2.5e+02 Score=28.43 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006350 290 RIREAISCIAEELEVEK 306 (649)
Q Consensus 290 ki~aai~slk~ELe~ER 306 (649)
+++.++.+++.|+++|=
T Consensus 38 k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 38 RAQRYINDVKAEVSREI 54 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556667777777663
No 331
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.92 E-value=6.8e+02 Score=26.08 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccHHHH
Q 006350 290 RIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIM----EQVCDELARGIGEDRAEF 365 (649)
Q Consensus 290 ki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRell----E~vCDELAkgI~edkaEV 365 (649)
-|.-+|+.++.+|..=|+..-+.=...+.|-++|.+...-..+ -|.+++..| |++..+++..+..++..+
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k------~e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEK------LEEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444444444444444443322211 234555554 667777777777777777
Q ss_pred HHHHHhhHHHHHHH-HHhHHHHhhhHhhhHhhhhhhhhhhhhh
Q 006350 366 EELKRESAKVKEEM-EKEREMLQLADVLREERVQMKLSEAKYH 407 (649)
Q Consensus 366 e~LKres~k~~eE~-eeER~MLqmAEvWREERVQMKL~eAk~~ 407 (649)
..++.....+.+-+ .-.+.|-.+-.-|.+=|-|+....|+..
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666554422 2334444444455555555555555443
No 332
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=28.57 E-value=2.1e+02 Score=27.06 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSE 268 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~e 268 (649)
.-+++|..+-.++..+++.|.++.++-+..+..
T Consensus 10 ~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (120)
T PF09969_consen 10 ALLPLLRPILEEIRELKAELEELEERLQELEDS 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 345667777777777777777776666554443
No 333
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=28.38 E-value=8.8e+02 Score=27.16 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=9.6
Q ss_pred HHHHHHHH---HHHHHHHHHH
Q 006350 321 KELAETKA---CLSNAMKELE 338 (649)
Q Consensus 321 ~ELaE~Ks---s~~~alkelE 338 (649)
.||.|+=. ++.+|+++|.
T Consensus 45 ~ELEEaiLagGaaaNavrdYq 65 (351)
T PF07058_consen 45 RELEEAILAGGAAANAVRDYQ 65 (351)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 44555433 3556666664
No 334
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.30 E-value=9.8e+02 Score=27.71 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 006350 293 EAISCIAEELEVE 305 (649)
Q Consensus 293 aai~slk~ELe~E 305 (649)
.-+...+.|++.|
T Consensus 58 eE~~~~R~Ele~e 70 (514)
T TIGR03319 58 EEVHKLRAELERE 70 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555544
No 335
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.81 E-value=5.6e+02 Score=25.10 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 006350 248 VDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAA---WRRKERERIREAISCIAEELEV 304 (649)
Q Consensus 248 L~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~a---wKsKE~eki~aai~slk~ELe~ 304 (649)
|--.=.++.-++.+....+.+++.+.+|....... +...+.++....|+.++.||+.
T Consensus 113 L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 113 LSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34444455566666666666666666665433211 1223334444444444444443
No 336
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=27.72 E-value=9.3e+02 Score=27.23 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006350 337 LESEKRAKDIMEQVCDELA 355 (649)
Q Consensus 337 lE~ERKaRellE~vCDELA 355 (649)
|..+...+.++++.+++|-
T Consensus 137 l~d~~~~~~lId~~i~~l~ 155 (445)
T PRK13428 137 VADPAQQSATVDRFLDELD 155 (445)
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 4334445677777777663
No 337
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=27.69 E-value=6.8e+02 Score=25.65 Aligned_cols=153 Identities=22% Similarity=0.303 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIA--EELEVEKKLKRQTERLNK 317 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk--~ELe~ERk~Rrr~E~lnr 317 (649)
+|+||+. -|.-|+.|+=|+.-....+..|-+..+.-|-++.+...++-.+.-...+ .+|.. ++ .-+|+=-.
T Consensus 2 visALK~----LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~--qL-~aAEtRCs 74 (178)
T PF14073_consen 2 VISALKN----LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSS--QL-SAAETRCS 74 (178)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHH--HH-HHHHHHHH
Confidence 5667664 4667888888888777777777777776666665433332221111110 00000 00 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcccHHHHHHHHHhhHHHHH-HHHHhHHHHhhh
Q 006350 318 KLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARG-------IGEDRAEFEELKRESAKVKE-EMEKEREMLQLA 389 (649)
Q Consensus 318 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkg-------I~edkaEVe~LKres~k~~e-E~eeER~MLqmA 389 (649)
.|-+.|.-++.-+.. -|.||. .++|.- ..|-++ |-.--..++.|-++..++-. -.--|.+|-++=
T Consensus 75 lLEKQLeyMRkmv~~----ae~er~--~~le~q-~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE 147 (178)
T PF14073_consen 75 LLEKQLEYMRKMVES----AEKERN--AVLEQQ-VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELE 147 (178)
T ss_pred HHHHHHHHHHHHHHH----HHHhhh--HHHHHH-HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433322222 222332 122221 112122 11112334445555555542 244688889999
Q ss_pred HhhhHhhhhhhhhhhhh
Q 006350 390 DVLREERVQMKLSEAKY 406 (649)
Q Consensus 390 EvWREERVQMKL~eAk~ 406 (649)
+-+.+|-=|-||+..|.
T Consensus 148 ~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 148 EKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988876654
No 338
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=27.53 E-value=7.1e+02 Score=25.80 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLN 265 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~ 265 (649)
|.....||++...+|+.|++.++..
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~ 28 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNL 28 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888654
No 339
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.38 E-value=6.7e+02 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQC 263 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~ 263 (649)
|..|+..|-.++.+++.+.+.-+
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555444
No 340
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.38 E-value=3.3e+02 Score=24.47 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYL---MKHFAEEKAAWRRKERERIREAIS 296 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L---~KqlaEEK~awKsKE~eki~aai~ 296 (649)
..|--|.-|++|++.-...-+.|.+|.+..++..+.| -.|+.+|-..| |++|++.+-
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W----QerlrsLLG 74 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW----QERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 3455577788888877777777777777666655555 45777888888 566666553
No 341
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=27.34 E-value=5.6e+02 Score=26.94 Aligned_cols=19 Identities=11% Similarity=0.301 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006350 306 KKLKRQTERLNKKLGKELA 324 (649)
Q Consensus 306 Rk~Rrr~E~lnrKL~~ELa 324 (649)
+.+|+....+|.+|..|+.
T Consensus 104 ~~~~k~~~~~~~kl~~e~~ 122 (234)
T cd07686 104 QQVKKSYIGVHQQIEAEMY 122 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 342
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.88 E-value=1.3e+03 Score=28.53 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKR-------QTE 313 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr-------r~E 313 (649)
+..+..+|..+...+..|++-++. +|-+|--+|.-.+.. ++. ---.|..++.||+.|+---- .+.
T Consensus 427 ~eki~E~lq~~eqel~~llq~~ek---ev~dLe~~l~~~~~~----eq~-yskQVeeLKtELE~EkLKN~ELt~~~nkLs 498 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIREK---EVHDLEIQLTTIKES----EQH-YSKQVEELKTELEQEKLKNTELTVNCNKLS 498 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHh----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888776654 455555555554443 222 33457788999998752211 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006350 314 RLNKKLGKELAETKACLSNAMKE 336 (649)
Q Consensus 314 ~lnrKL~~ELaE~Kss~~~alke 336 (649)
.-|+.|+.|-..+...+++.-.+
T Consensus 499 lEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 499 LEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 23677777777766666554333
No 343
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.82 E-value=1.1e+03 Score=27.63 Aligned_cols=41 Identities=32% Similarity=0.329 Sum_probs=24.0
Q ss_pred ccccccCCCCCCchHHHHhhhcceEEEecccCCCCCCCCCCCCCcccc
Q 006350 24 KIRKRGCSSSSSSSLAQRYRFKRAILVGKRGGRGGGGGSSTPVPAWKT 71 (649)
Q Consensus 24 kirkrg~sssssss~~~~~r~Kr~iLvgKRg~~g~~gG~sTP~PtWkl 71 (649)
.||=-|+|||+.|....-| .--+.++-+.||+++|+|+--+
T Consensus 17 p~rLqGssss~as~adgll-------a~T~s~pssp~gss~dsp~~~~ 57 (502)
T KOG0982|consen 17 PMRLQGSSSSSASVADGLL-------AETRSRPSSPGGSSSDSPLIAF 57 (502)
T ss_pred ccccCCCccCCCCcccchh-------hhccCCCCCCCCCCCCCchhhh
Confidence 4566677776555443332 2255555556688888887555
No 344
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.81 E-value=4.7e+02 Score=23.51 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006350 318 KLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGE 360 (649)
Q Consensus 318 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~e 360 (649)
.|..|+..+..=.++.-++|.+-...-.-||.+|.|+.+.+..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333444444444445557789999999887753
No 345
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=26.74 E-value=5.8e+02 Score=24.51 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006350 299 AEELEVEKKLKRQTERLN 316 (649)
Q Consensus 299 k~ELe~ERk~Rrr~E~ln 316 (649)
+.||+..+.+-.++--++
T Consensus 4 ~~e~~~~~~~~a~~~e~e 21 (136)
T PF04871_consen 4 KSELEEEKQLAAKILELE 21 (136)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 346
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=26.63 E-value=7.2e+02 Score=25.56 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 006350 290 RIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELK 369 (649)
Q Consensus 290 ki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK 369 (649)
-+..++..+..+.|.-=. .|..++..|..+-.-+....+++|+.||. +.+-.-.+.+.+.+-.+.++.-|
T Consensus 62 s~~~a~~~il~~~e~lA~-------~h~~~a~~L~~~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leKAK 131 (234)
T cd07652 62 SFSNAYHSSLEFHEKLAD-------NGLRFAKALNEMSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEKAK 131 (234)
T ss_pred cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHH
Confidence 345566666666543322 34455555555555566778888888886 34444456777777778888888
Q ss_pred HhhHHHHHHHH
Q 006350 370 RESAKVKEEME 380 (649)
Q Consensus 370 res~k~~eE~e 380 (649)
..-...++|+|
T Consensus 132 ~~Y~~~c~e~E 142 (234)
T cd07652 132 ARYDSLADDLE 142 (234)
T ss_pred HHHHHHHHHHH
Confidence 88888887775
No 347
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.58 E-value=9.8e+02 Score=27.13 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhh
Q 006350 310 RQTERLNKKLGKELAETKACLSNAMKEL---ES----EKRAKDIMEQVCDELARGIGEDRAEFEELKRES 372 (649)
Q Consensus 310 rr~E~lnrKL~~ELaE~Kss~~~alkel---E~----ERKaRellE~vCDELAkgI~edkaEVe~LKres 372 (649)
+++-+-|.||.++|-.+..-|.++--+. |. -+....-+|---|++.++++|.+.|...|-||.
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 5677889999999998888877754332 21 112223344445666677777777777766653
No 348
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.49 E-value=6.3e+02 Score=26.66 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 292 REAISCIAEELEVEKKLKRQTERLNKKLGKELAETKAC 329 (649)
Q Consensus 292 ~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss 329 (649)
+..|..+..+|+ +...||.||-..|+.+...
T Consensus 5 q~~l~~l~~~~~-------~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 5 QKELSELEAKLE-------EQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Confidence 344455555554 4556788888888877743
No 349
>PRK14157 heat shock protein GrpE; Provisional
Probab=26.28 E-value=7.9e+02 Score=25.96 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
.|..+|...+.+|.+|...-....-+.+.+.|+...|+..-+..--+++-..+-.+-+-|+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLe 141 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDID 141 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4666777777777777766666677888888888877666555555555444444444443
No 350
>PRK10132 hypothetical protein; Provisional
Probab=26.26 E-value=5.1e+02 Score=24.23 Aligned_cols=51 Identities=8% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 252 RVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 252 R~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
++++.+|..+-+..-.+++.|++..+.+.-.-=..-++|+.+.+...++-|
T Consensus 11 ~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l 61 (108)
T PRK10132 11 DDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARM 61 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666554432222333444444444444333
No 351
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=26.12 E-value=1e+03 Score=27.05 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=49.2
Q ss_pred hchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 006350 264 LNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKAC---LSNAMKELESE 340 (649)
Q Consensus 264 s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss---~~~alkelE~E 340 (649)
+...+++.++....++-...-..--+.|...+..+.+.=+-+.-....+..+..+++....--+.. |...+.++|.+
T Consensus 22 ~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~ 101 (473)
T PF14643_consen 22 SISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKE 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333333333334556666666666665555666666666666666633333332 34456666666
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 006350 341 KRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 341 RKaRellE~vCDELAkgI~ 359 (649)
|. +-|..+|..++..+.
T Consensus 102 R~--~~l~~~l~~~~~~L~ 118 (473)
T PF14643_consen 102 RA--DKLKKVLRKYVEILE 118 (473)
T ss_pred HH--HHHHHHHHHHHHHHH
Confidence 65 344666666655543
No 352
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=26.02 E-value=5.8e+02 Score=24.32 Aligned_cols=14 Identities=21% Similarity=0.499 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 006350 249 DRARVQVDQLIKEQ 262 (649)
Q Consensus 249 ~~AR~~I~eL~~E~ 262 (649)
..|+..+.+++.+-
T Consensus 4 ~eA~~ka~~I~~eA 17 (198)
T PF01991_consen 4 EEAQEKAEEIIAEA 17 (198)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665544
No 353
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.96 E-value=7e+02 Score=25.25 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 306 KKLKRQTERLNKKLGKELAETK----ACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 306 Rk~Rrr~E~lnrKL~~ELaE~K----ss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
.+.|+.++.+....-..|.+++ .-+..|..+-+++ .-+++++.=.|..+-+.+-+++++.-+..
T Consensus 92 e~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~--~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 92 NELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQL--KSELEKEANRQANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333334433 3333343333333 23556666666666666666666665443
No 354
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.93 E-value=5.8e+02 Score=24.29 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEEL 368 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 368 (649)
+..-+.++..+||+++-.+-.+ ++ -|-.+..++..|..++.+ ...=|+||=..|.|....|+..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL-------~k----qkd~L~~~l~~L~~q~~s---~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGEL-------AK----QKDQLRNALQSLQAQNAS---RNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-------HH----hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665544 11 122244444445444433 2344555555555544444443
No 355
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.73 E-value=8.5e+02 Score=26.13 Aligned_cols=121 Identities=29% Similarity=0.327 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 006350 246 AEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA-EEKAAWRRKERERIREAISCIAEELEVEK-KLKRQTERLNKKLGKEL 323 (649)
Q Consensus 246 ~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla-EEK~awKsKE~eki~aai~slk~ELe~ER-k~Rrr~E~lnrKL~~EL 323 (649)
.|--.|-..++.++..+...-+ .+.+..+ ..=..|+.+-.+-|+..++.-.+.|..+. .+.+..+.++ .+.-+|
T Consensus 107 ~EY~~a~~d~r~~m~~q~~~vK---~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~-~~~~~l 182 (325)
T PF08317_consen 107 REYYTADPDMRLLMDNQFQLVK---TYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD-ELLPKL 182 (325)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445555666666665554322 2222222 23456899988999988888888887654 4566666666 455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccHHHHHHHHHhhHHHHHHHHHhHH
Q 006350 324 AETKACLSNAMKELESEKRAKDIMEQVCDELARGIG-EDRAEFEELKRESAKVKEEMEKERE 384 (649)
Q Consensus 324 aE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~-edkaEVe~LKres~k~~eE~eeER~ 384 (649)
.+.+.++..-+..| +..- .+++ .|+.+++.+|.+......+++.-|.
T Consensus 183 ~~~~~~L~~e~~~L---k~~~-----------~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 183 RERKAELEEELENL---KQLV-----------EEIESCDQEELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHH---HHHH-----------hhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555554433322 2211 1133 3667777777766666555544333
No 356
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.28 E-value=9.1e+02 Score=26.29 Aligned_cols=90 Identities=29% Similarity=0.326 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKEQCLNHSEIEYLMKHFA-----EEKAAWRRKERERIREAISCIAEELEVEK-KLKRQTERLNKKLG 320 (649)
Q Consensus 247 EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla-----EEK~awKsKE~eki~aai~slk~ELe~ER-k~Rrr~E~lnrKL~ 320 (649)
|--.|=.-++.|+..+... +|.+| ..=.-|+.+--+-|+..+..-.+.|..+. .+.++.+.+| .+.
T Consensus 103 EY~~a~~d~r~lm~~Qf~l-------vK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~-~~~ 174 (312)
T smart00787 103 EYFSASPDVKLLMDKQFQL-------VKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLN-SIK 174 (312)
T ss_pred HHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3334445555555544432 33333 23356899998888888888877776544 4566666666 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDIM 347 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRell 347 (649)
-+|.+-...+ ..++...++...-+
T Consensus 175 ~~l~~~~~~L---~~e~~~L~~~~~e~ 198 (312)
T smart00787 175 PKLRDRKDAL---EEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHH---HHHHHHHHHhHHHH
Confidence 4444433333 33444444443333
No 357
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.21 E-value=3.9e+02 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=23.7
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 006350 230 IEEQHSSGITLISAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 230 leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E 261 (649)
++-+-.+.+.+|..|+.||-.++++...|..-
T Consensus 277 P~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 277 PKETITAIYQLIAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344466788888888888888888888664
No 358
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=3.3e+02 Score=31.13 Aligned_cols=123 Identities=23% Similarity=0.270 Sum_probs=76.6
Q ss_pred HHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH--------HHHHHHHHHH-----
Q 006350 222 KVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE--------EKAAWRRKER----- 288 (649)
Q Consensus 222 KVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE--------EK~awKsKE~----- 288 (649)
|||..-- ++||.. +..|..||.+--+-|+..++|..+..-.-+.|.+.+.. +.+..|-+..
T Consensus 32 kvlke~v-iee~gk-----~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqfe~pt~~aa~k~~~~k~~~~~ 105 (637)
T KOG4421|consen 32 KVLKEAV-IEEQGK-----EAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQFEIPTHEAAKKKDKDKGGRRG 105 (637)
T ss_pred HHHHHHH-HHHhcc-----hhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccCCCCCccccccccccCCCCC
Confidence 4554432 566654 77899999999999999999988876555666655542 1111111110
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccH
Q 006350 289 ------ERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDR 362 (649)
Q Consensus 289 ------eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edk 362 (649)
--..+.|+.+..+|-.| +.-|.+|+-||+| +||.--.-|-++...+|++.++.+
T Consensus 106 tqsdsaaaaaarid~~ee~l~~~-------~aq~erlvgeiae-------------nerqhavemaelsekia~emr~le 165 (637)
T KOG4421|consen 106 TQSDSAAAAAARIDAAEEALIFE-------EAQKERLVGEIAE-------------NERQHAVEMAELSEKIADEMRDLE 165 (637)
T ss_pred CCCCcccccccccchHHHHHHHH-------HHHhhHHHHHHHh-------------hhHhhHHHHHHHHHHHHHHHHHHH
Confidence 11234466666666443 4456677777775 566666666677777777777777
Q ss_pred HHHHHHHH
Q 006350 363 AEFEELKR 370 (649)
Q Consensus 363 aEVe~LKr 370 (649)
.|++.|.-
T Consensus 166 de~~r~~m 173 (637)
T KOG4421|consen 166 DETERIAM 173 (637)
T ss_pred HHHHHHHH
Confidence 77776554
No 359
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.04 E-value=2.9e+02 Score=30.23 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 006350 338 ESEKRAKDIMEQVCDELARGIGEDRAEFE 366 (649)
Q Consensus 338 E~ERKaRellE~vCDELAkgI~edkaEVe 366 (649)
+-.-+..+-|-+-.++|.|+|...|+-|.
T Consensus 258 ~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 258 EGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555444444333
No 360
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=24.64 E-value=6.8e+02 Score=24.60 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhc
Q 006350 251 ARVQVDQLIKEQCLN 265 (649)
Q Consensus 251 AR~~I~eL~~E~~s~ 265 (649)
-..+|+.|+++|...
T Consensus 25 ~~~~Ir~Li~~Q~~~ 39 (150)
T PF10454_consen 25 FLQRIRRLIKEQHDH 39 (150)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777787777554
No 361
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=24.63 E-value=7.5e+02 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006350 248 VDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIR 292 (649)
Q Consensus 248 L~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~ 292 (649)
|.=+...+.+++.|....-..|..+++.+.+.+..+..+...+.+
T Consensus 80 lwPt~eelee~e~Ee~~~~~sl~em~k~~~~~~~~k~~k~~~Rek 124 (217)
T PF10147_consen 80 LWPTPEELEEQEYEEVEWPPSLQEMLKELREKKEEKEEKRLAREK 124 (217)
T ss_pred hCCCHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555666555566666666666665555554444433
No 362
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=24.57 E-value=6.7e+02 Score=24.53 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKEQCLNHSEIEYLMKH-----FAEEKAAWRRKERERIREAISCIAEELEVEKK-LKRQTERLNKKLG 320 (649)
Q Consensus 247 EL~~AR~~I~eL~~E~~s~~~eie~L~Kq-----laEEK~awKsKE~eki~aai~slk~ELe~ERk-~Rrr~E~lnrKL~ 320 (649)
++...-.+|++|+++--.-+++|...+-+ +.-|=...=....|.|-..|+++...|.--+- .=..+..-=..|+
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~ 120 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQELA 120 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHH
Confidence 34555566666766666666655555444 33333555667799999999999988876551 0011222223444
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 321 KELAETKACLSNAMKELES--EKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~--ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
..+.++=..+..++..|.. +..-+.. +.+++|..++.++..+.++..+...+
T Consensus 121 ~~~~~~~~~l~~~i~~l~~~~~~~~~~~------~~~~~I~~~E~~~D~l~~~~~~~lf~ 174 (214)
T PF01865_consen 121 EIVVEAIEELVEAIEELKSILESSFEEK------ELIKEINKLEEEADKLYRRLIKKLFS 174 (214)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCCS-HCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444555555553 2221111 66778888999999999887765544
No 363
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.42 E-value=9.2e+02 Score=26.05 Aligned_cols=89 Identities=21% Similarity=0.377 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
..|..|+.+|..-+..+.+ ...+++.+|+.+..++.. -++.++.++....+++.+.+ .+......
T Consensus 15 ~~V~~m~~~L~~~~~~L~~-------k~~e~e~ll~~i~~~~~~-----a~~~~~~~~~ee~~~~~~~~---ei~~~~~~ 79 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEE-------KQKEAEELLEEIEKEQEE-----AEKKKAIVEEEEEEAEKQAK---EIEEIKEE 79 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHH---HHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3466666666655443332 224566777777654332 11222223333333332221 23334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 319 LGKELAETKACLSNAMKELESEKR 342 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERK 342 (649)
...+|+++.-++..|...|..=.+
T Consensus 80 a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 80 AEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 667888888888888777765544
No 364
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.81 E-value=7.4e+02 Score=27.02 Aligned_cols=71 Identities=32% Similarity=0.424 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 316 NKKLGKELAETKACLSNAMKE---LESEKRA-----------KDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 316 nrKL~~ELaE~Kss~~~alke---lE~ERKa-----------RellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
-+-|-.+|+|+..-|.+||-- |.+||-+ =+-||+..-++=+++.+---+++.+|+....++.|+.+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888753 5555543 23344444455556655556677777776666555444
Q ss_pred hHHHH
Q 006350 382 EREML 386 (649)
Q Consensus 382 ER~ML 386 (649)
=|.-|
T Consensus 159 Lre~L 163 (302)
T PF09738_consen 159 LREQL 163 (302)
T ss_pred HHHHH
Confidence 33333
No 365
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.72 E-value=9e+02 Score=26.13 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=13.8
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHH
Q 006350 396 RVQMKLSEAKYHFEEKNAAVERLR 419 (649)
Q Consensus 396 RVQMKL~eAk~~leeK~s~vdkL~ 419 (649)
-+|-.|.+|.-.|++=...|+.|.
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345556666666666566666554
No 366
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.32 E-value=1.5e+03 Score=28.23 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=17.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 006350 402 SEAKYHFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 402 ~eAk~~leeK~s~vdkL~~elE~FL~s 428 (649)
.+-+.+|-+| ..|-+++.+||+-|..
T Consensus 917 ~~~~~ql~ek-dFv~kqqq~le~~lkr 942 (1187)
T KOG0579|consen 917 IEIEHQLKEK-DFVMKQQQNLEAMLKR 942 (1187)
T ss_pred HHHHHhhhhH-HHHHHHHHHHHHHHHH
Confidence 3445666666 5677788888887764
No 367
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.32 E-value=5.1e+02 Score=24.64 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred ccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHH--------------HHHHHHHHHhhchhHHHHH
Q 006350 207 LKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARV--------------QVDQLIKEQCLNHSEIEYL 272 (649)
Q Consensus 207 l~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~--------------~I~eL~~E~~s~~~eie~L 272 (649)
|++...-+.+.+++++.=.++| -+.......+...+.+|++++. .|.+++.+....+.+.+.+
T Consensus 95 L~~y~~~~~s~k~~l~~R~~~~---~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 95 LKEYLRYCQAVKETLDDRADAL---LTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 273 MKHFAEEKAAWRRKERERIREAISCIAE 300 (649)
Q Consensus 273 ~KqlaEEK~awKsKE~eki~aai~slk~ 300 (649)
...+..|-..|...-..-++.++.....
T Consensus 172 ~~~~~~El~~f~~~~~~dlk~~l~~~~~ 199 (218)
T cd07596 172 SERLKEELKRFHEERARDLKAALKEFAR 199 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 368
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.29 E-value=1.4e+03 Score=27.91 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccHHHHHHHHHhhHHHHHHHHH------
Q 006350 311 QTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGI---GEDRAEFEELKRESAKVKEEMEK------ 381 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI---~edkaEVe~LKres~k~~eE~ee------ 381 (649)
.+|.--++|-.||.|.|..=...|+||-.---... -|=|.| +.-.-|.|.||++..++.||++.
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi-------slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARLLQDYSELEEENI-------SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567778888888777777776643222222 233333 45566888888888877666542
Q ss_pred -hHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 006350 382 -EREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGT 428 (649)
Q Consensus 382 -ER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~s 428 (649)
--+.=.||| -+|.||=.+|..=-.+=.-|+-||..|+..
T Consensus 146 e~~rLk~iae--------~qleEALesl~~EReqk~~LrkEL~~~~~~ 185 (717)
T PF09730_consen 146 EAARLKEIAE--------KQLEEALESLKSEREQKNALRKELDQHLNI 185 (717)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 222223443 234445444444444445567777776654
No 369
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.94 E-value=1.4e+03 Score=27.70 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=7.8
Q ss_pred HhhchhHHHHHHHHhHHH
Q 006350 262 QCLNHSEIEYLMKHFAEE 279 (649)
Q Consensus 262 ~~s~~~eie~L~KqlaEE 279 (649)
+...+.+|++=++.+..+
T Consensus 556 ~~~ar~ei~~rv~~Lk~~ 573 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQ 573 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 370
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.91 E-value=1.8e+02 Score=23.34 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 347 MEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 347 lE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
||.-|+-|-......+++-+.|+++-.+++.|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777766666544
No 371
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=22.90 E-value=2e+02 Score=30.57 Aligned_cols=52 Identities=31% Similarity=0.471 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHH-HHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWR-RKERERIR 292 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awK-sKE~eki~ 292 (649)
+.-.+.|+.+....|+.|..|.+....-.+..+++|.++|..|- +...++|.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 55667789999999999999999999999999999999999998 34445554
No 372
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.86 E-value=1e+03 Score=25.93 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=19.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006350 234 HSSGITLISAIRAEVDRARVQVDQLIKEQCLNH 266 (649)
Q Consensus 234 ~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~ 266 (649)
....-..+..|..+|..++.++.+.+..-+.++
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677777777777766666555443
No 373
>PF15456 Uds1: Up-regulated During Septation
Probab=22.81 E-value=3.2e+02 Score=26.06 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHH
Q 006350 284 RRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRA 363 (649)
Q Consensus 284 KsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edka 363 (649)
-+||...+...|.+++.-|.-|+|.|.-..++.+=+..-=.. ....-....+.--+....+.=|||++.++...+.
T Consensus 27 LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~----~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~ 102 (124)
T PF15456_consen 27 LKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRR----ARFSRESSLKAEEELAESDRKCEELAQELWKLEN 102 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc----cCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345666778888888888888888888776665432210000 0000011112223344566678999888765554
Q ss_pred HHHHHHH
Q 006350 364 EFEELKR 370 (649)
Q Consensus 364 EVe~LKr 370 (649)
-.-++++
T Consensus 103 R~~~~~~ 109 (124)
T PF15456_consen 103 RLAEVRQ 109 (124)
T ss_pred HHHHHHH
Confidence 4444433
No 374
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.77 E-value=1.3e+03 Score=27.05 Aligned_cols=126 Identities=17% Similarity=0.262 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----H
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRK----------ERERIREAISCIAEELE----V 304 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsK----------E~eki~aai~slk~ELe----~ 304 (649)
-|+-.|..++-+|+..|.+-+++--..+..|.+-.++|.++.-.-..+ |-.-..++|..++.=+- +
T Consensus 345 ~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~ 424 (542)
T KOG0993|consen 345 DLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTS 424 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHH
Confidence 456788899999999998888877777777777666666655443322 22233344433322211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcccHHHHHHHHHh
Q 006350 305 EKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQ-------VCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~-------vCDELAkgI~edkaEVe~LKre 371 (649)
=+.-+.-+|-+-.+|.+|+--.+ ..||+|+-+++-||. -|.++---|...|.|.|.|++.
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~-------eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQ-------EQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 11122345566667776665333 347788888887774 3555555666666666666643
No 375
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.73 E-value=5.4e+02 Score=28.22 Aligned_cols=77 Identities=27% Similarity=0.310 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhh
Q 006350 295 ISCIAEELEVEKKLKRQTERLNKKLGKELAETKA--CLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRES 372 (649)
Q Consensus 295 i~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Ks--s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 372 (649)
......+|+.+|+.|.+.-.+-+-+-.|-++.+- -+.+|.++||.+.+ .|=|.| -.++++=++
T Consensus 62 Yl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~--lLke~l-----------~seleeKkr-- 126 (291)
T KOG4466|consen 62 YLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKK--LLKENL-----------ISELEEKKR-- 126 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHH--
Confidence 4456678999999999888777777665554332 23344444444433 111111 123333222
Q ss_pred HHHHHHHHHhHHHHhhhHh
Q 006350 373 AKVKEEMEKEREMLQLADV 391 (649)
Q Consensus 373 ~k~~eE~eeER~MLqmAEv 391 (649)
-+++||.|+-|+-+
T Consensus 127 -----kieeeR~smDlts~ 140 (291)
T KOG4466|consen 127 -----KIEEERLSMDLTSD 140 (291)
T ss_pred -----HHHHHHhhhhhccc
Confidence 37889999998875
No 376
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.46 E-value=6e+02 Score=29.90 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQC 263 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~ 263 (649)
-.-+|...+.++..+|-.|++|+.
T Consensus 303 s~e~L~qqV~qs~EKIa~LEqEKE 326 (518)
T PF10212_consen 303 SREGLAQQVQQSQEKIAKLEQEKE 326 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888999999999999999763
No 377
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.34 E-value=7.1e+02 Score=23.98 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHH
Q 006350 237 GITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAA 282 (649)
Q Consensus 237 ~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~a 282 (649)
+..-+.+|..|+..-+.++.+|..+....+.++..|.+.++.+-+.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~ 115 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELR 115 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4455899999999999999999999999999999999999877544
No 378
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.23 E-value=8.3e+02 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 006350 244 IRAEVDRARVQVDQLIKEQCLNHSEIEYL 272 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~E~~s~~~eie~L 272 (649)
...++...+.+|++|..+....+.+++.+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666666665544443333
No 379
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=22.11 E-value=1.5e+03 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
+.-..||+++---|++|+.... ++=.-+|+|.
T Consensus 23 ~~he~el~~tnkfik~~ikdg~----~li~a~knls 54 (812)
T KOG1451|consen 23 KCHEVELDRTNKFIKELIKDGK----ELISALKNLS 54 (812)
T ss_pred hHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHH
Confidence 4445677777777777777653 3444445444
No 380
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.07 E-value=1.3e+03 Score=27.02 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhh
Q 006350 310 RQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLA 389 (649)
Q Consensus 310 rr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmA 389 (649)
-++|.++..+..-+.|+ .++++...++|.+++ ++|+.|-+|--.+..-..|...++.+ +..|.-=-
T Consensus 347 sqlen~k~~~e~~~~e~-~~l~~~~~~~e~~kk---~~e~k~~q~q~k~~k~~kel~~~~E~----------n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEA-DSLKQESSDLEAEKK---IVERKLQQLQTKLKKCQKELKEEREE----------NKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHH-HhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhH
Confidence 35555555555444443 356677777776654 78888888877766555555554422 22333334
Q ss_pred HhhhH--hhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 390 DVLRE--ERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 390 EvWRE--ERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
.+|+. +-++-.+.+|..+.+++..-|.--..+|=-||.+.+
T Consensus 413 ~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 413 DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 57764 234444555666666666666555556666666654
No 381
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=21.99 E-value=1.1e+03 Score=25.88 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIK 260 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~ 260 (649)
..++..|..+++++..|..
T Consensus 99 ~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 99 QESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443
No 382
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.96 E-value=1.5e+03 Score=27.51 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 280 KAAWRRKERE------RIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELE 338 (649)
Q Consensus 280 K~awKsKE~e------ki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE 338 (649)
-+.|..+.++ +.+..+.++..||.+.+..+..+..|-.+|++........+.+++-..+
T Consensus 109 a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e 173 (629)
T KOG0963|consen 109 AAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETE 173 (629)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444 9999999999999999999999999999998888777766665554444
No 383
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.90 E-value=1e+03 Score=25.79 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=36.6
Q ss_pred ccccccccccchhhhHHHHHHHHhhh---ccccccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 006350 203 IKTRLKDVSSGLTASKELLKVLNRIW---GIEEQHSSGITLISAIRAEVDRARVQVDQLIKE 261 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVLnrIw---~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E 261 (649)
+..++.+....|..+..-|.-+.+=. .+.++..-...-+..|..+|..++++..++...
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777766555544433 334443334466778888888888776665443
No 384
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.69 E-value=5.9e+02 Score=22.82 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHh
Q 006350 253 VQVDQLIKEQCLNHSEIEYLMKHF 276 (649)
Q Consensus 253 ~~I~eL~~E~~s~~~eie~L~Kql 276 (649)
.-|+.|++|..+|++|++....++
T Consensus 7 ~~vkRL~KE~~~Y~kE~~~q~~rl 30 (90)
T PF02970_consen 7 GVVKRLLKEEASYEKEVEEQEARL 30 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887766554444
No 385
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=21.56 E-value=9.5e+02 Score=25.17 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 292 REAISCIAEELEVEKKLKRQTERL 315 (649)
Q Consensus 292 ~aai~slk~ELe~ERk~Rrr~E~l 315 (649)
++.++..+.+|+.=++.-.|.+.|
T Consensus 113 ~~~l~~ak~~l~~a~~~~~r~~~L 136 (331)
T PRK03598 113 RAAVKQAQAAYDYAQNFYNRQQGL 136 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444433333333
No 386
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.40 E-value=1.4e+03 Score=26.97 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE 278 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE 278 (649)
-++..+.-++..+...+...++.+.+-- .+.+++.+-+++.+
T Consensus 161 ~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 161 KTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 3456677777777777777776666554 35556666555543
No 387
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.37 E-value=1e+03 Score=25.57 Aligned_cols=122 Identities=24% Similarity=0.371 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 237 GITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYL-------MKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLK 309 (649)
Q Consensus 237 ~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L-------~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~R 309 (649)
|--|++++..==+.+-..|++|++....+..=|+-| +.+...|-..|+.|+..++. +|.
T Consensus 22 N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~--------------~Lq 87 (258)
T PF15397_consen 22 NKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS--------------KLQ 87 (258)
T ss_pred hHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH--------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHH
Q 006350 310 RQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREML 386 (649)
Q Consensus 310 rr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~ML 386 (649)
++++.||.|+.+-..| .+|...-+|-|=-=| |..|.+....|..||.....-.+|+.+-++|.
T Consensus 88 ~ql~~l~akI~k~~~e--l~~L~TYkD~EYPvK------------~vqIa~L~rqlq~lk~~qqdEldel~e~~~~e 150 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQEE--LNFLSTYKDHEYPVK------------AVQIANLVRQLQQLKDSQQDELDELNEMRQME 150 (258)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhhhhhhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=21.31 E-value=3.3e+02 Score=22.77 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 304 VEKKLKRQTERLNKKLGKELAETKACLSNAMKELE 338 (649)
Q Consensus 304 ~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE 338 (649)
.|.|+++++++.-..|-.++.....++..+|++=+
T Consensus 11 feqkskeqa~ste~~vk~af~~~E~~l~~~L~~s~ 45 (52)
T PF04837_consen 11 FEQKSKEQAESTEQMVKNAFEQHEKSLSAALKESE 45 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 47889999999999999999999999998888754
No 389
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=21.19 E-value=2e+02 Score=33.04 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=47.9
Q ss_pred hcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 006350 358 IGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEA 424 (649)
Q Consensus 358 I~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~ 424 (649)
.=+|+.||+.+|++-.|+..-+..-+-=+++ -+++|-+|.+++.+|.-=+++...|+.|+.+
T Consensus 415 lv~~edeirrlkrdm~klkq~l~RN~gd~v~-----s~~lqe~L~ev~~~Lasl~aqea~ls~eq~s 476 (486)
T KOG2185|consen 415 LVEYEDEIRRLKRDMLKLKQMLNRNKGDLVV-----SEALQERLKEVRKALASLLAQEAALSNEQVS 476 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 3467888889988888877656555543343 4689999999999999999999999888754
No 390
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.12 E-value=8.3e+02 Score=24.35 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE-VEKKLKRQTERLNKKLG 320 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe-~ERk~Rrr~E~lnrKL~ 320 (649)
..|..=|.........|.+.++..-.....|=+.|.. |-.-|.+ +..+|..+-.=.+ -...+...++.+...++
T Consensus 24 ~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~----ls~~E~~-L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~ 98 (200)
T cd07624 24 TLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL----WSASETE-LAPLLEGVSSAVERCTAALEVLLSDHEFVFL 98 (200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555666655555555555555543 5555543 5555555543322 12222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 321 KELAETKACLSNAMKELESEKRAKDI-MEQVCDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 321 ~ELaE~Kss~~~alkelE~ERKaRel-lE~vCDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
-=|.|. ..+..++|.+=+.|....+ .|.++++|.+-..+.+.||++...+.+.+..+
T Consensus 99 e~Lkey-~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~ 156 (200)
T cd07624 99 PPLREY-LLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANAD 156 (200)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323332 2345555555556655555 78888888888777666676666655555443
No 391
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.09 E-value=8.7e+02 Score=25.40 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=77.2
Q ss_pred cccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHH
Q 006350 206 RLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRR 285 (649)
Q Consensus 206 rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKs 285 (649)
.-.+++..+.+..++-..|-.=|.-|-.+-++-+|=..=+..|...|.+-.+|++.-+.....|+-++..|.+--+.-|
T Consensus 79 ~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LK- 157 (201)
T PF11172_consen 79 AAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLK- 157 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh-
Confidence 3456666777778888888888966656668889888889999999999999999999999999999999988877766
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006350 286 KERERIREAISCIAEELE 303 (649)
Q Consensus 286 KE~eki~aai~slk~ELe 303 (649)
|.-=..+|.+|+.|+.
T Consensus 158 --HNLNA~AI~sL~~e~~ 173 (201)
T PF11172_consen 158 --HNLNAQAIASLQGEFS 173 (201)
T ss_pred --ccccHHHHHHHHHHHH
Confidence 4445667888887764
No 392
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.04 E-value=5.6e+02 Score=23.39 Aligned_cols=51 Identities=25% Similarity=0.463 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHH
Q 006350 308 LKRQTERLNKKLGK-ELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAK 374 (649)
Q Consensus 308 ~Rrr~E~lnrKL~~-ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 374 (649)
-|+++|.+++||-. ||+. .+|+-||+-=.+|-.-+..|+.++..|+++..|
T Consensus 17 cr~~le~ve~rL~~~eLs~----------------e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 17 CRRRLEAVESRLRRRELSP----------------EARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHcccCCCh----------------HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 47788888888853 3443 456666666677778888999999999987554
No 393
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.96 E-value=2.9e+02 Score=23.37 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLM 273 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~ 273 (649)
+..+..++...+.++.+|..|...-+.|+..|-
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666777777777777776666666655554
No 394
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=20.91 E-value=9e+02 Score=24.65 Aligned_cols=39 Identities=8% Similarity=0.263 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
.++..|..+|...+.+|.++-.+|+..+.++..-++.|.
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le 181 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLE 181 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 446666666777777777766666666555544444443
No 395
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.71 E-value=9.2e+02 Score=24.67 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHH
Q 006350 286 KERERIREAISCIAEELEVEKKLKRQTERLNKKLGKEL--AETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRA 363 (649)
Q Consensus 286 KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~EL--aE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edka 363 (649)
.+-+|+...+..|...+.....+=+.+..+|.+++..- ......-..+++.|+ .+-....+|+..|+.|+.=|..
T Consensus 197 ~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~---~a~~~y~el~~~l~eG~~FY~~ 273 (296)
T PF13949_consen 197 EELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLE---AAYDAYKELSSNLEEGLKFYND 273 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHH
Confidence 34556777777777777777777777777777775322 112233344444444 5667778888888888765554
Q ss_pred HH
Q 006350 364 EF 365 (649)
Q Consensus 364 EV 365 (649)
=.
T Consensus 274 L~ 275 (296)
T PF13949_consen 274 LL 275 (296)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 396
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.60 E-value=9.5e+02 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQC 263 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~ 263 (649)
+..++..|..+++++..+.....
T Consensus 82 l~~a~a~l~~~~~~~~~~~~~~~ 104 (334)
T TIGR00998 82 LAKAEANLAALVRQTKQLEITVQ 104 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666665555443
No 397
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=20.55 E-value=2.8e+02 Score=37.26 Aligned_cols=118 Identities=24% Similarity=0.272 Sum_probs=72.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhhcccHHHHHHHHHh-
Q 006350 311 QTERLNKKLG---KELAETKACLSNAMKELESEKRA---------------KDIMEQVCDELARGIGEDRAEFEELKRE- 371 (649)
Q Consensus 311 r~E~lnrKL~---~ELaE~Kss~~~alkelE~ERKa---------------RellE~vCDELAkgI~edkaEVe~LKre- 371 (649)
+.|.+|+|++ ++.+.+|-++-.|.+-.-+=+|+ +..||+||+=|--+..+++.+-.-|||.
T Consensus 2163 ~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrDD 2242 (3164)
T COG5245 2163 LEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRDD 2242 (3164)
T ss_pred hHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhhh
Confidence 3444444443 45666666666666655555554 3469999987777766666666666642
Q ss_pred -----------------hHHHHHHHH-----------------------------HhHHHHhhhHhhhHhhhhhhhhhhh
Q 006350 372 -----------------SAKVKEEME-----------------------------KEREMLQLADVLREERVQMKLSEAK 405 (649)
Q Consensus 372 -----------------s~k~~eE~e-----------------------------eER~MLqmAEvWREERVQMKL~eAk 405 (649)
..+-+|+-+ -=+++|..-+..|+|=-..++. |
T Consensus 2243 fi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E-~- 2320 (3164)
T COG5245 2243 FIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE-A- 2320 (3164)
T ss_pred HHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH-H-
Confidence 112221111 1245677778888885544444 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcc
Q 006350 406 YHFEEKNAAVERLRNELEAYLGTKK 430 (649)
Q Consensus 406 ~~leeK~s~vdkL~~elE~FL~sk~ 430 (649)
+..|+....-..|..+|++|+...+
T Consensus 2321 ~~~e~~L~~~~~~s~dl~~~~l~~r 2345 (3164)
T COG5245 2321 FLVEDRLTLGKGLSSDLMTFKLRRR 2345 (3164)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677778889999999988765
No 398
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.51 E-value=8.2e+02 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 006350 342 RAKDIMEQVCDELARGIGE 360 (649)
Q Consensus 342 KaRellE~vCDELAkgI~e 360 (649)
.++.-+|.++..+-.++..
T Consensus 181 ~~~~~~~~is~~~k~E~~r 199 (236)
T PF09325_consen 181 QAKDEFEEISENIKKELER 199 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 399
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.22 E-value=8.6e+02 Score=24.15 Aligned_cols=78 Identities=15% Similarity=0.351 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHH
Q 006350 340 EKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLR 419 (649)
Q Consensus 340 ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~ 419 (649)
..++++-+-+.+..|...|...+.+|..+-.+....+..+..|-.-|.= .-..+...|......++.|+
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~-----------~~~~l~~~l~~~~g~I~~L~ 169 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKT-----------DVDELQSILAGENGDIPQLQ 169 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHTT--HHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHhcccCCHHHHH
Confidence 5566777777777888889889999998888888887777776665542 12455566777788899999
Q ss_pred HHHHHHHhh
Q 006350 420 NELEAYLGT 428 (649)
Q Consensus 420 ~elE~FL~s 428 (649)
.+|+++...
T Consensus 170 ~~I~~~~~~ 178 (184)
T PF05791_consen 170 KQIENLNEE 178 (184)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHHHH
Confidence 999887544
No 400
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.11 E-value=1.2e+03 Score=25.90 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGED 361 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ed 361 (649)
++|.|++....|+..| ...|.|-+-=+++|-+-= ..+.|+|||.|-...-++-.+.
T Consensus 18 ahaqm~sav~qL~~~r---~~teelIr~rVrq~V~hV------------qaqEreLLe~v~~rYqR~y~em 73 (324)
T PF12126_consen 18 AHAQMRSAVSQLGRAR---ADTEELIRARVRQVVAHV------------QAQERELLEAVEARYQRDYEEM 73 (324)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666554 344444444444443211 3456677777765444443333
No 401
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=20.08 E-value=8.1e+02 Score=23.81 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWR 284 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awK 284 (649)
+.|..=|+.-+..|.+=+.+=...+.+...+..++..+...-+
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar 71 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666666666666666666666666555544433
No 402
>PRK10698 phage shock protein PspA; Provisional
Probab=20.06 E-value=9.6e+02 Score=24.65 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHh
Q 006350 313 ERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRE 371 (649)
Q Consensus 313 E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 371 (649)
+.=|--||++-..-|..+...+..|+.+.. -.+..+++|-..+...+..|..+|.+
T Consensus 80 ~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~---~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 80 RKEKEDLARAALIEKQKLTDLIATLEHEVT---LVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444777755556666666666665543 44556666666666666666665544
Done!