Query 006350
Match_columns 649
No_of_seqs 97 out of 110
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 22:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.4 0.0076 2.6E-07 57.2 17.2 131 217-370 5-136 (154)
2 3oja_B Anopheles plasmodium-re 96.6 0.023 7.8E-07 60.4 13.7 64 312-375 514-577 (597)
3 2eqb_B RAB guanine nucleotide 96.2 0.057 2E-06 47.9 12.0 90 244-359 3-93 (97)
4 1c1g_A Tropomyosin; contractIl 95.9 0.95 3.2E-05 41.2 26.4 24 243-266 10-33 (284)
5 1i84_S Smooth muscle myosin he 94.7 0.074 2.5E-06 62.6 9.2 20 241-260 859-878 (1184)
6 1i84_S Smooth muscle myosin he 94.5 0.0065 2.2E-07 71.4 0.0 123 241-370 957-1081(1184)
7 2e7s_A RAB guanine nucleotide 93.3 0.4 1.4E-05 44.7 9.4 107 243-365 12-119 (135)
8 3oja_B Anopheles plasmodium-re 93.1 1.9 6.5E-05 45.8 15.6 57 288-344 472-532 (597)
9 2dfs_A Myosin-5A; myosin-V, in 93.1 1.4 4.8E-05 52.1 15.9 98 289-393 956-1054(1080)
10 2dfs_A Myosin-5A; myosin-V, in 93.0 1.7 5.8E-05 51.4 16.4 11 106-116 644-654 (1080)
11 3u59_A Tropomyosin beta chain; 91.5 3.2 0.00011 36.0 12.5 75 241-319 11-95 (101)
12 3u1c_A Tropomyosin alpha-1 cha 90.1 5.1 0.00017 35.0 12.5 75 241-319 11-95 (101)
13 3na7_A HP0958; flagellar bioge 89.0 19 0.00063 35.5 20.2 49 330-378 92-140 (256)
14 2hg7_A Phage-like element PBSX 88.7 0.082 2.8E-06 47.3 0.0 37 295-331 65-101 (110)
15 2ocy_A RAB guanine nucleotide 87.6 7.9 0.00027 36.8 12.7 82 247-328 38-129 (154)
16 3oja_A Leucine-rich immune mol 87.6 6.5 0.00022 41.1 13.4 68 305-372 412-479 (487)
17 3vkg_A Dynein heavy chain, cyt 87.3 71 0.0024 42.4 24.8 38 352-389 2038-2075(3245)
18 2v71_A Nuclear distribution pr 85.0 23 0.00078 34.6 14.7 41 234-274 37-77 (189)
19 3vkg_A Dynein heavy chain, cyt 84.5 19 0.00065 47.5 17.7 29 397-425 2040-2068(3245)
20 3na7_A HP0958; flagellar bioge 84.3 33 0.0011 33.7 18.7 33 350-382 126-158 (256)
21 2eqb_B RAB guanine nucleotide 83.8 18 0.0006 32.2 12.1 79 241-326 7-95 (97)
22 2w6b_A RHO guanine nucleotide 83.7 4.6 0.00016 32.8 7.6 24 298-321 29-52 (56)
23 3ol1_A Vimentin; structural ge 82.0 27 0.00092 31.2 12.9 48 265-313 18-68 (119)
24 2p22_C Protein SRN2; endosome, 80.6 42 0.0014 32.5 14.7 29 344-372 137-167 (192)
25 3oja_A Leucine-rich immune mol 79.1 33 0.0011 35.8 14.4 35 347-381 433-467 (487)
26 2v4h_A NF-kappa-B essential mo 78.7 13 0.00044 33.8 9.6 80 268-372 25-106 (110)
27 2fxo_A Myosin heavy chain, car 78.3 38 0.0013 30.4 15.5 77 286-369 13-89 (129)
28 2w6b_A RHO guanine nucleotide 76.9 6.7 0.00023 31.8 6.5 37 320-356 16-52 (56)
29 3swk_A Vimentin; cytoskeleton, 76.2 33 0.0011 29.3 11.1 64 308-371 5-78 (86)
30 3iyk_A VP5; icosahedral virus; 75.0 25 0.00087 38.9 12.4 32 229-266 79-110 (526)
31 3haj_A Human pacsin2 F-BAR; pa 74.7 93 0.0032 33.1 19.7 72 308-379 130-201 (486)
32 2i1j_A Moesin; FERM, coiled-co 74.2 5.6 0.00019 43.9 7.3 76 254-341 287-362 (575)
33 2e7s_A RAB guanine nucleotide 73.6 8.3 0.00028 36.0 7.2 90 238-327 17-116 (135)
34 2v0o_A FCHO2, FCH domain only 73.2 65 0.0022 30.7 17.5 52 317-378 125-178 (276)
35 3tnu_B Keratin, type II cytosk 71.3 57 0.0019 29.2 12.1 62 240-302 30-91 (129)
36 2b5u_A Colicin E3; high resolu 69.3 75 0.0026 35.4 14.4 70 288-367 344-427 (551)
37 3cl3_D NF-kappa-B essential mo 69.0 10 0.00036 35.2 6.7 93 241-340 4-102 (130)
38 3ol1_A Vimentin; structural ge 68.5 65 0.0022 28.7 15.0 65 245-314 19-90 (119)
39 1cii_A Colicin IA; bacteriocin 66.2 45 0.0015 37.0 11.8 25 277-301 389-413 (602)
40 3o0z_A RHO-associated protein 65.6 1E+02 0.0034 29.8 15.0 51 284-334 60-117 (168)
41 3tnu_A Keratin, type I cytoske 65.0 59 0.002 29.2 10.8 62 240-302 32-93 (131)
42 2q12_A DIP13 alpha, DCC-intera 63.3 1.1E+02 0.0038 29.5 15.1 51 333-384 184-245 (265)
43 3mq9_A Bone marrow stromal ant 62.3 1.4E+02 0.0047 31.0 14.5 26 357-382 444-469 (471)
44 3i00_A HIP-I, huntingtin-inter 61.8 46 0.0016 30.2 9.4 27 239-265 15-41 (120)
45 3l4f_A RHO guanine nucleotide 61.1 20 0.00069 29.6 6.2 41 319-359 12-52 (61)
46 2b5u_A Colicin E3; high resolu 59.5 1.6E+02 0.0054 32.9 14.6 50 379-429 383-432 (551)
47 3ghg_A Fibrinogen alpha chain; 56.5 48 0.0016 37.1 10.1 30 195-232 45-74 (562)
48 4ani_A Protein GRPE; chaperone 54.6 1.2E+02 0.0041 30.0 11.7 65 239-303 59-123 (213)
49 1ic2_A Tropomyosin alpha chain 53.7 96 0.0033 25.8 11.0 24 241-264 8-31 (81)
50 3okq_A BUD site selection prot 53.2 1.4E+02 0.0048 28.1 11.3 82 254-357 55-136 (141)
51 3jsv_C NF-kappa-B essential mo 53.1 59 0.002 28.8 8.3 83 269-376 4-88 (94)
52 3mq7_A Bone marrow stromal ant 52.6 1.4E+02 0.0049 27.5 11.3 42 242-283 28-69 (121)
53 1nfn_A Apolipoprotein E3; lipi 52.5 1.6E+02 0.0055 28.0 13.4 23 307-329 92-114 (191)
54 1f5n_A Interferon-induced guan 51.9 2.9E+02 0.0098 30.8 20.8 90 333-425 485-579 (592)
55 3ghg_A Fibrinogen alpha chain; 51.8 83 0.0029 35.2 11.0 33 291-323 62-94 (562)
56 1m1j_B Fibrinogen beta chain; 50.5 87 0.003 34.3 10.9 57 218-277 103-159 (464)
57 1deq_A Fibrinogen (alpha chain 48.9 2.1E+02 0.0071 30.9 13.1 48 247-294 85-132 (390)
58 3ok8_A Brain-specific angiogen 47.6 2.3E+02 0.0077 28.3 16.2 124 216-361 69-203 (222)
59 3u06_A Protein claret segregat 42.1 53 0.0018 35.0 7.5 32 242-273 6-37 (412)
60 3i00_A HIP-I, huntingtin-inter 41.2 1.1E+02 0.0039 27.7 8.5 66 253-326 15-80 (120)
61 3bas_A Myosin heavy chain, str 40.9 1.7E+02 0.0057 24.9 11.8 65 290-368 18-82 (89)
62 1k1f_A Breakpoint cluster regi 40.6 29 0.001 29.3 4.2 42 241-282 28-69 (72)
63 3hnw_A Uncharacterized protein 40.6 39 0.0013 31.1 5.5 46 236-281 56-103 (138)
64 3o0z_A RHO-associated protein 38.9 2.7E+02 0.0094 26.8 17.9 58 311-375 59-116 (168)
65 3mq9_A Bone marrow stromal ant 37.7 3.6E+02 0.012 27.8 15.2 22 348-369 449-470 (471)
66 3r2p_A Apolipoprotein A-I; amp 37.2 2.4E+02 0.0083 26.3 10.5 32 288-321 113-144 (185)
67 2fxo_A Myosin heavy chain, car 36.8 2.3E+02 0.0079 25.3 17.0 69 295-370 50-118 (129)
68 3a7p_A Autophagy protein 16; c 36.8 2.8E+02 0.0097 26.3 12.9 77 240-325 59-135 (152)
69 4dyl_A Tyrosine-protein kinase 36.7 3.8E+02 0.013 27.8 16.5 34 306-339 111-145 (406)
70 4etp_A Kinesin-like protein KA 36.5 75 0.0026 33.5 7.6 24 241-264 5-28 (403)
71 3i2w_A Syndapin, LD46328P; EFC 36.1 3.1E+02 0.01 26.5 15.9 13 291-303 65-77 (290)
72 3hnw_A Uncharacterized protein 35.8 2.2E+02 0.0075 26.1 9.7 67 298-378 66-132 (138)
73 2j69_A Bacterial dynamin-like 35.5 5.1E+02 0.017 28.9 14.7 54 378-431 598-655 (695)
74 3q8t_A Beclin-1; autophagy, AT 35.0 2.2E+02 0.0076 24.6 11.4 40 351-390 34-74 (96)
75 2xhe_B Syntaxin1; exocytosis, 32.8 3.7E+02 0.012 26.4 14.6 120 203-342 46-166 (279)
76 3vem_A Helicase protein MOM1; 32.5 2.6E+02 0.0089 25.6 9.3 38 297-340 61-98 (115)
77 3ghg_C Fibrinogen gamma chain; 32.5 66 0.0023 34.7 6.4 34 203-236 43-76 (411)
78 2j1d_G DAAM1, disheveled-assoc 31.9 3E+02 0.01 29.5 11.4 65 205-271 246-310 (483)
79 4b9q_A Chaperone protein DNAK; 31.5 3.1E+02 0.011 29.9 11.6 7 45-51 335-341 (605)
80 3l4f_A RHO guanine nucleotide 31.5 98 0.0033 25.6 5.8 27 298-324 26-52 (61)
81 4e61_A Protein BIM1; EB1-like 31.4 68 0.0023 28.9 5.3 34 238-271 3-36 (106)
82 3qwe_A GMIP, GEM-interacting p 30.8 4.5E+02 0.015 26.8 13.6 27 211-237 24-50 (279)
83 2x3v_A Syndapin I, protein kin 30.7 4E+02 0.014 26.3 20.4 188 227-426 16-224 (337)
84 1h7c_A Tubulin-specific chaper 29.9 1.6E+02 0.0056 26.0 7.5 29 248-276 9-37 (108)
85 3s9g_A Protein hexim1; cyclin 29.9 2E+02 0.0069 25.9 8.0 28 351-378 60-87 (104)
86 2ykt_A Brain-specific angiogen 29.5 4.3E+02 0.015 26.3 18.3 148 220-373 23-186 (253)
87 1x79_B RAB GTPase binding effe 28.6 3.3E+02 0.011 24.6 11.4 24 291-314 11-34 (112)
88 1wle_A Seryl-tRNA synthetase; 28.4 3.3E+02 0.011 29.7 11.2 37 236-272 67-103 (501)
89 4b9q_A Chaperone protein DNAK; 26.9 3.3E+02 0.011 29.7 10.8 15 342-356 586-600 (605)
90 1m1j_C Fibrinogen gamma chain; 25.2 87 0.003 33.6 5.8 34 203-236 43-76 (409)
91 2i1j_A Moesin; FERM, coiled-co 25.0 1.5E+02 0.0052 32.6 7.8 21 354-374 410-430 (575)
92 3lay_A Zinc resistance-associa 25.0 2E+02 0.0068 27.5 7.6 22 252-273 84-105 (175)
93 3m91_A Proteasome-associated A 23.7 1.7E+02 0.0057 23.2 5.7 27 313-339 22-48 (51)
94 1jad_A PLC-beta, phospholipase 23.4 6E+02 0.02 25.8 18.1 136 241-387 76-216 (251)
95 2yy0_A C-MYC-binding protein; 23.4 79 0.0027 25.0 3.8 33 236-268 16-48 (53)
96 3caz_A BAR protein; thermo-aci 23.2 5.8E+02 0.02 25.5 10.9 60 254-319 99-158 (294)
97 2d1l_A Metastasis suppressor p 22.6 6E+02 0.02 25.5 16.3 152 210-377 68-235 (253)
98 3tnu_A Keratin, type I cytoske 22.3 4.2E+02 0.014 23.6 10.1 15 241-255 47-61 (131)
99 1cn3_F Fragment of coat protei 22.0 29 0.001 24.5 1.0 6 66-71 16-21 (29)
100 4f61_I Stathmin-like domain R4 21.8 6.4E+02 0.022 25.6 17.3 26 394-419 197-223 (240)
101 4gkw_A Spindle assembly abnorm 21.8 5.1E+02 0.018 24.5 13.1 95 322-421 26-120 (167)
102 1deq_A Fibrinogen (alpha chain 21.6 6.6E+02 0.023 27.1 11.5 52 345-405 105-156 (390)
103 1x79_B RAB GTPase binding effe 21.0 4.7E+02 0.016 23.7 12.8 40 311-356 56-95 (112)
104 1f5n_A Interferon-induced guan 20.8 7.6E+02 0.026 27.4 12.3 13 358-370 569-581 (592)
105 3lay_A Zinc resistance-associa 20.1 2.1E+02 0.0073 27.3 6.8 7 160-166 3-9 (175)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.41 E-value=0.0076 Score=57.16 Aligned_cols=131 Identities=16% Similarity=0.259 Sum_probs=100.9
Q ss_pred hHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006350 217 SKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAIS 296 (649)
Q Consensus 217 S~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~ 296 (649)
|+.|+..+|+.=.|+|. +..++.+|..++.+|++|+..+.. ++.|... ..-+..-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~------------~~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKRE------------LSDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTH------------HHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------------HhhhhHHHH
Confidence 68999999999877775 678899999999999999987643 3333222 122566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350 297 CIAEELEVEKKLKRQTERLNKKLGKELAETKAC-LSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR 370 (649)
Q Consensus 297 slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 370 (649)
.+..+|..|+..|..+|.-..++-.||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-+.+.+-+.-++.|-.
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999997665 45555555567888888888888888877766655555443
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.57 E-value=0.023 Score=60.39 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 312 TERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 312 ~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
.+..+.++.+++...+.++.+-.++|++.++.++.||..+++.-+.+.+.++|+..++.+..+.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666667776667777777777666666666666655555554443
No 3
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.25 E-value=0.057 Score=47.93 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 244 IRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKEL 323 (649)
Q Consensus 244 Lk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~EL 323 (649)
|..+|+.+|.+|++|..+... +..-+..|..+|..|+..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888866544 333444577888888999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006350 324 AETKAC-LSNAMKELESEKRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 324 aE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~ 359 (649)
.+.-.| |..|=+=.=.+|+.+..+|.--+.|...|.
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 886655 344444445567777777766666665554
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.94 E-value=0.95 Score=41.22 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhch
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNH 266 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~ 266 (649)
+|+.+++.+...+.+|..+.....
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.66 E-value=0.074 Score=62.64 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIK 260 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~ 260 (649)
+..|+.||...+..+..+..
T Consensus 859 l~~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555544444444433
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.51 E-value=0.0065 Score=71.40 Aligned_cols=123 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE--EKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKK 318 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaE--EK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrK 318 (649)
+..|+.+|+..+..+.+|..+......+++.+-.+++. +....-.++.+.+...+..+..+|+.+......++....+
T Consensus 957 l~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~ 1036 (1184)
T 1i84_S 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666655554443 2223333445556666777777776665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR 370 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 370 (649)
|..++.+.+.. ++.+++.+.-+++...++...+.+.+.+++.+..
T Consensus 1037 le~el~ele~~-------le~~e~~~~ele~~~~~le~el~~l~~el~el~~ 1081 (1184)
T 1i84_S 1037 HESMISELEVR-------LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081 (1184)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554433 3333333333444444444444444444443333
No 7
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.27 E-value=0.4 Score=44.73 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 243 AIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKE 322 (649)
Q Consensus 243 aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~E 322 (649)
.++.+|.-.+.+|++|+..+. +++.|.+.+ ..+..-+..+..+|..|+..|..+|.-..++-.|
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 75 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 75 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888887664 233333333 2344446669999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 006350 323 LAETKAC-LSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365 (649)
Q Consensus 323 LaE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 365 (649)
|.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..+.+-+.-+
T Consensus 76 lE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 76 VEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997665 455555555678888888877777777776544433
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.10 E-value=1.9 Score=45.82 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEVEKKLKR----QTERLNKKLGKELAETKACLSNAMKELESEKRAK 344 (649)
Q Consensus 288 ~eki~aai~slk~ELe~ERk~Rr----r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaR 344 (649)
.....+.++.++.+++..+..=+ .++....+|.+++..++.-......++.+.+++.
T Consensus 472 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 34455666666777666554322 2233335555555555555555555555444444
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.08 E-value=1.4 Score=52.05 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 006350 289 ERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEEL 368 (649)
Q Consensus 289 eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 368 (649)
++...-+..|+.+|++..++-+..+.+..+ +.+.+.-+...-++|++..+..+.+|+.++++-. +.+..|..|
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~----v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L 1028 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNR----VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSEL 1028 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344555666666666655554443333222 2222222223334444444455555666655542 334555555
Q ss_pred HHhhHHHHHHHH-HhHHHHhhhHhhh
Q 006350 369 KRESAKVKEEME-KEREMLQLADVLR 393 (649)
Q Consensus 369 Kres~k~~eE~e-eER~MLqmAEvWR 393 (649)
+.+-.+++.+++ -|..++..++.+.
T Consensus 1029 ~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 1029 KEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554432 2334555555444
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.99 E-value=1.7 Score=51.35 Aligned_cols=11 Identities=27% Similarity=0.090 Sum_probs=5.8
Q ss_pred HHHhhhhhhhh
Q 006350 106 ARKLAATLWEI 116 (649)
Q Consensus 106 ARKLaAtLWEi 116 (649)
--.|-.+|=..
T Consensus 644 L~~Lm~~L~~t 654 (1080)
T 2dfs_A 644 LHLLMETLNAT 654 (1080)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 35566665443
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.52 E-value=3.2 Score=36.01 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH----
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRK------ERERIREAISCIAEELEVEKKLKR---- 310 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERk~Rr---- 310 (649)
|.+|+.|.+.|..++.+++...+.... -..++.+|-.+-+.| +.+++...+......|+...+.+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~----~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAED----RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888877644322 222233332222222 356677777777888888887777
Q ss_pred HHHHHHHHH
Q 006350 311 QTERLNKKL 319 (649)
Q Consensus 311 r~E~lnrKL 319 (649)
...+||||+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455666665
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.15 E-value=5.1 Score=35.01 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH----
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRK------ERERIREAISCIAEELEVEKKLKR---- 310 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERk~Rr---- 310 (649)
|.+|+.|.+.|..++.++....+.... -..++.+|-.+...| +-|++...+...+..|+...+.+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~----~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEE----RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999888888766543322 222222222222111 356677777777788888877777
Q ss_pred HHHHHHHHH
Q 006350 311 QTERLNKKL 319 (649)
Q Consensus 311 r~E~lnrKL 319 (649)
...+||||+
T Consensus 87 ev~~L~Rri 95 (101)
T 3u1c_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556666665
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.97 E-value=19 Score=35.45 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 330 LSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 330 ~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
+....+|++.-.+....+|+-=-|+...|...++++..++.+......+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666665555544444333
No 14
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=88.71 E-value=0.082 Score=47.27 Aligned_cols=37 Identities=43% Similarity=0.601 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 295 ISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLS 331 (649)
Q Consensus 295 i~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~ 331 (649)
|.-+..||..|+-+|+++|.+|.-|++||+.+|..+.
T Consensus 65 ~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL 101 (110)
T 2hg7_A 65 VELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLL 101 (110)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778888899999999999999999997664
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.63 E-value=7.9 Score=36.77 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERE--RIREAISCIAEEL--------EVEKKLKRQTERLN 316 (649)
Q Consensus 247 EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~e--ki~aai~slk~EL--------e~ERk~Rrr~E~ln 316 (649)
.|+.++.++.+|..+......++..|+..+++|+..+..-|++ +|..-|.+|-+-| -.+|+-|-.+|.-|
T Consensus 38 ~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~ 117 (154)
T 2ocy_A 38 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN 117 (154)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677788888888888889999999999999888765443 3444444444333 34788888889889
Q ss_pred HHHHHHHHHHHH
Q 006350 317 KKLGKELAETKA 328 (649)
Q Consensus 317 rKL~~ELaE~Ks 328 (649)
.+|-+.|.|+..
T Consensus 118 ~~L~~ql~e~~~ 129 (154)
T 2ocy_A 118 KRLTEQLREKDT 129 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888887553
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.61 E-value=6.5 Score=41.07 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhh
Q 006350 305 EKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRES 372 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 372 (649)
..+..++.|.+-.++-.|...++.-....-.+.++.++..+.++.+-+|+-..|.+.++.+-.+.+.-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 55667777777777777777777777777788888888888899999999999988888877766553
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.33 E-value=71 Score=42.40 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhh
Q 006350 352 DELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLA 389 (649)
Q Consensus 352 DELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmA 389 (649)
.++-..|..++++.+++.+|.+++..|++.=..=|.-|
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555665555555555555555433333433
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.03 E-value=23 Score=34.63 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=22.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 006350 234 HSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMK 274 (649)
Q Consensus 234 ~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~K 274 (649)
+.++=-|=..|..||.++..++++|.......+.+++.+-.
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666555555554444433
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.50 E-value=19 Score=47.47 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=16.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 006350 397 VQMKLSEAKYHFEEKNAAVERLRNELEAY 425 (649)
Q Consensus 397 VQMKL~eAk~~leeK~s~vdkL~~elE~F 425 (649)
|+-+|..-+..+++..+.-++|..|++..
T Consensus 2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2040 LEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666543
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.34 E-value=33 Score=33.68 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=14.8
Q ss_pred HHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHh
Q 006350 350 VCDELARGIGEDRAEFEELKRESAKVKEEMEKE 382 (649)
Q Consensus 350 vCDELAkgI~edkaEVe~LKres~k~~eE~eeE 382 (649)
..+++...+.+.++++..++.+......+++.+
T Consensus 126 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 126 KQEDLKKEMLELEKLALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555554444444444433
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.81 E-value=18 Score=32.22 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHH--------HHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERER--IREAISCIAEEL--------EVEKKLKR 310 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~ek--i~aai~slk~EL--------e~ERk~Rr 310 (649)
+..|+.+|.++..++.....|. ..|+..|++|+..+..-|+++ |..-|..|-.-| -.+|+-|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~-------~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEV-------KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766654 346666677766665544332 333333333322 24688888
Q ss_pred HHHHHHHHHHHHHHHH
Q 006350 311 QTERLNKKLGKELAET 326 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~ 326 (649)
.+|.-|.+|...|.|.
T Consensus 80 ~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 80 AIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999998888874
No 22
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=83.72 E-value=4.6 Score=32.80 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 298 IAEELEVEKKLKRQTERLNKKLGK 321 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~lnrKL~~ 321 (649)
|+.=||.|.|+|+++|.+=+|+.+
T Consensus 29 m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 29 MKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444588899999999999998743
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.00 E-value=27 Score=31.20 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=25.9
Q ss_pred chhHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 265 NHSEIEYLMKHFAEEKAAWRR---KERERIREAISCIAEELEVEKKLKRQTE 313 (649)
Q Consensus 265 ~~~eie~L~KqlaEEK~awKs---KE~eki~aai~slk~ELe~ERk~Rrr~E 313 (649)
+..+|+.|.++|..= ..-+. -|-+.++.+++.++...|.|-..|..+|
T Consensus 18 ye~~I~~LR~qid~~-~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E 68 (119)
T 3ol1_A 18 YEEEMRELRRQVDQL-TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE 68 (119)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445677776666322 11111 1345556666666666666666665554
No 24
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=80.62 E-value=42 Score=32.52 Aligned_cols=29 Identities=3% Similarity=0.156 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhccc--HHHHHHHHHhh
Q 006350 344 KDIMEQVCDELARGIGED--RAEFEELKRES 372 (649)
Q Consensus 344 RellE~vCDELAkgI~ed--kaEVe~LKres 372 (649)
=.-.|++|++|+....+. +-+|..+-++-
T Consensus 137 ~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y 167 (192)
T 2p22_C 137 TKKLDEESSQLETTTRSIDSADDLDQFIKNY 167 (192)
T ss_dssp HHHHHHHHHHHHHSCSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 334678899999998875 78888877653
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.12 E-value=33 Score=35.79 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHH
Q 006350 347 MEQVCDELARGIGEDRAEFEELKRESAKVKEEMEK 381 (649)
Q Consensus 347 lE~vCDELAkgI~edkaEVe~LKres~k~~eE~ee 381 (649)
++..++++..+|...++|-+.++.+...+-..+++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 66667777666666666666655554444333333
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.71 E-value=13 Score=33.78 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 268 EIEYLMKHF--AEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKD 345 (649)
Q Consensus 268 eie~L~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRe 345 (649)
+|++|.-+| +||.++-|-.+-++++..|...+.+||. +.=.|.-+.=+-.|.+.||.+|+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~------------------I~vLkaQv~IY~~DF~aERadRE 86 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET------------------VPVLKAQADIYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHccchhhHH
Confidence 444444443 4566666666666666655554444432 11122223345568888888887
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHhh
Q 006350 346 IMEQVCDELARGIGEDRAEFEELKRES 372 (649)
Q Consensus 346 llE~vCDELAkgI~edkaEVe~LKres 372 (649)
-+- -++.+++.+++.|.++.
T Consensus 87 kl~-------~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 87 KLV-------EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHH-------hHHHHHHHHHHHHHHHH
Confidence 543 44445555555665543
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=78.33 E-value=38 Score=30.43 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 006350 286 KERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365 (649)
Q Consensus 286 KE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 365 (649)
.|-.+...-|..++..|+.+-+.|+.+|.-|.+|..|..+... .|+.|+-.-.=.|+.|+.|...-.+.+..|
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~-------qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL-------QVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788899999999999999999999888877553 455566666667788888777655555655
Q ss_pred HHHH
Q 006350 366 EELK 369 (649)
Q Consensus 366 e~LK 369 (649)
..|.
T Consensus 86 ~el~ 89 (129)
T 2fxo_A 86 KEMN 89 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 28
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=76.87 E-value=6.7 Score=31.85 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 320 GKELAETKACLSNAMKELESEKRAKDIMEQVCDELAR 356 (649)
Q Consensus 320 ~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 356 (649)
-.|+.+.+.-+++.-+-||.|.|||.-||.+-..+.+
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666677889999999999999877744
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.19 E-value=33 Score=29.27 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=42.2
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccHHHHHHHHHh
Q 006350 308 LKRQTERL---NKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIG-------EDRAEFEELKRE 371 (649)
Q Consensus 308 ~Rrr~E~l---nrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~-------edkaEVe~LKre 371 (649)
||++++.+ |.+|.-|+-.++.++-.+..-||.|-..|.-+|.-..-|-+.+. +.++.|+.|+.|
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 56777777778888888888888888888887766555555554 455556555543
No 30
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=74.98 E-value=25 Score=38.91 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=20.2
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006350 229 GIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNH 266 (649)
Q Consensus 229 ~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~ 266 (649)
|..|-.+..+|-. =...+..|+||+.|++.++
T Consensus 79 G~~~~~pDPLsPg------E~~~~~Kl~eLE~e~k~d~ 110 (526)
T 3iyk_A 79 GSGEEIPDPLSPG------ERGIQAKLKELEDEQRNEL 110 (526)
T ss_pred ccCCCCCCCCCHh------HHHHHHHHHHHHHHHhhHH
Confidence 4555555544432 2467888888888887654
No 31
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=74.74 E-value=93 Score=33.10 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHH
Q 006350 308 LKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEM 379 (649)
Q Consensus 308 ~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~ 379 (649)
.||..+.--.|+.++|.+.-..+.++.+.|+..-+.-+.....-...-....--..+++.++.+..+...++
T Consensus 130 erK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~ 201 (486)
T 3haj_A 130 ETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDV 201 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 467777777788888877777777777777655443333222211110011111356666666666655443
No 32
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.17 E-value=5.6 Score=43.88 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 254 QVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNA 333 (649)
Q Consensus 254 ~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~a 333 (649)
+..=....++.+.-+|..+-.|-.|||..++ .|+.+ |..|+++|..+|.--.-|-.-|...+..+.+|
T Consensus 287 ~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~~-~e~~~-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (575)
T 2i1j_A 287 NHELYMRRRKPDTIDVQQMKAQAREEKLAKQ-AQREK-----------LQLEIAARERAEKKQQEYQDRLRQMQEEMERS 354 (575)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-HHHTT-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333445566666777777777667665533 33333 55577888877777777777777777777777
Q ss_pred HHHHHHHH
Q 006350 334 MKELESEK 341 (649)
Q Consensus 334 lkelE~ER 341 (649)
-.+|++-.
T Consensus 355 ~~~l~~~~ 362 (575)
T 2i1j_A 355 QANLLEAQ 362 (575)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 77776533
No 33
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.58 E-value=8.3 Score=36.02 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHH--------HHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERER--IREAISCIAEEL--------EVEKK 307 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~ek--i~aai~slk~EL--------e~ERk 307 (649)
++..++=-.+|...+.+.++|..+......++..|...+++|+..+..-|.++ |..-|.+|-+-| -.+|+
T Consensus 17 l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~ 96 (135)
T 2e7s_A 17 IASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARM 96 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677778888888888877777889999999999988877765543 334444443333 24688
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006350 308 LKRQTERLNKKLGKELAETK 327 (649)
Q Consensus 308 ~Rrr~E~lnrKL~~ELaE~K 327 (649)
-|-.+|.-|.+|-..|.|..
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777754
No 34
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=73.21 E-value=65 Score=30.66 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcccHHHHHHHHHhhHHHHHH
Q 006350 317 KKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELAR--GIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 317 rKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk--gI~edkaEVe~LKres~k~~eE 378 (649)
.|+.+++.++...+.++.+.|+.. |.|+-+ .-+--..+++.++.+..++..+
T Consensus 125 ~~~~~~~~~~~~~l~Kak~~Y~~~----------c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~ 178 (276)
T 2v0o_A 125 LEAVQTIQSITQALQKSKENYNAK----------CVEQERLKKEGATQREIEKAAVKSKKATDT 178 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 355556655555555555555433 333211 0012345666666666555433
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.35 E-value=57 Score=29.17 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
-+.+-+.|+-..|..|+.|..|-.+.+.....|-..|++-.. +-..+-..+.+.|..+..+|
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-RGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhH
Confidence 355567777777777877777777777766677666664332 23334445555555555554
No 36
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=69.28 E-value=75 Score=35.39 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH--HHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNA------------MKEL--ESEKRAKDIMEQVCDE 353 (649)
Q Consensus 288 ~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~a------------lkel--E~ERKaRellE~vCDE 353 (649)
+.+....|++++.||+. +|+.|+.-+++++.-...+ +.-| .+-.-.=..++..-|+
T Consensus 344 ~~~t~~~~~~~~~~~~~----------~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~ 413 (551)
T 2b5u_A 344 QAKAVQVYNSRKSELDA----------ANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413 (551)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHh----------hhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHH
Confidence 35667889999999954 8999888777654311000 0112 1111112345667777
Q ss_pred HHhhhcccHHHHHH
Q 006350 354 LARGIGEDRAEFEE 367 (649)
Q Consensus 354 LAkgI~edkaEVe~ 367 (649)
+++++.++++++-.
T Consensus 414 ~~~~~s~~~~~ls~ 427 (551)
T 2b5u_A 414 AAKEKSDADAALSS 427 (551)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhh
Confidence 77777777775544
No 37
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=68.99 E-value=10 Score=35.22 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA---EEKAAW---RRKERERIREAISCIAEELEVEKKLKRQTER 314 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla---EEK~aw---KsKE~eki~aai~slk~ELe~ERk~Rrr~E~ 314 (649)
|.+|-.||+.|+....+-+.+++......-.+-+++. -|.-.- -.=.-++++=-+++|..+|.-||.. ++.
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 6678889999999999999999888776655544433 222111 1224577788899999999998864 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 315 LNKKLGKELAETKACLSNAMKELESE 340 (649)
Q Consensus 315 lnrKL~~ELaE~Kss~~~alkelE~E 340 (649)
=-+| |+..+.+..+..+||..-
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445 567888888888898873
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.51 E-value=65 Score=28.72 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 245 RAEVDRARVQVDQLIKE-------QCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTER 314 (649)
Q Consensus 245 k~EL~~AR~~I~eL~~E-------~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ 314 (649)
..+|...|.+|..+..+ ....+..++.|..++.+|...+ ..+.+.|..++..++++-=.|-.+|.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-----~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-----EEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 44455555555554444 4555566666777777765543 33455666677777665544444443
No 39
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=66.24 E-value=45 Score=36.98 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 277 AEEKAAWRRKERERIREAISCIAEE 301 (649)
Q Consensus 277 aEEK~awKsKE~eki~aai~slk~E 301 (649)
+++.+.-+-||++.|+.++-.++..
T Consensus 389 A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 389 ANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444445555555555544444
No 40
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.59 E-value=1e+02 Score=29.78 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 006350 284 RRKERERIREAISCIAEELEVEKKLKRQTERLNK-------KLGKELAETKACLSNAM 334 (649)
Q Consensus 284 KsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnr-------KL~~ELaE~Kss~~~al 334 (649)
=-..++.+..-+..|+..|+.||+.|.+.+-+.. -|--||..+|....++.
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666677777777777766655332 34455555555555443
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.02 E-value=59 Score=29.21 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEEL 302 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~EL 302 (649)
.+.+.+.|+-..|..|+.|..|-.+.+.....|-..|++=.. +-..+-..+.+.|..+..+|
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG-RYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888777776666666666664322 33334445555555555554
No 42
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=63.33 E-value=1.1e+02 Score=29.52 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------hc-ccHHHHHHHHHhhHHHHHHHHHhHH
Q 006350 333 AMKELESEKRAKDIMEQVCDELARG----------IG-EDRAEFEELKRESAKVKEEMEKERE 384 (649)
Q Consensus 333 alkelE~ERKaRellE~vCDELAkg----------I~-edkaEVe~LKres~k~~eE~eeER~ 384 (649)
.+.++. .|+.-++|+.++.=+--. +. +.+.-+..|..+..+++.+.+++++
T Consensus 184 ~l~~l~-~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~ 245 (265)
T 2q12_A 184 ALNTLQ-YKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIE 245 (265)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 477778888886532211 12 4444455566666666655554443
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.27 E-value=1.4e+02 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=16.9
Q ss_pred hhcccHHHHHHHHHhhHHHHHHHHHh
Q 006350 357 GIGEDRAEFEELKRESAKVKEEMEKE 382 (649)
Q Consensus 357 gI~edkaEVe~LKres~k~~eE~eeE 382 (649)
.|.|.+.||..|.++....+.|+++-
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777666666565543
No 44
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.76 E-value=46 Score=30.22 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLN 265 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~ 265 (649)
.+|-.|+.|++.-+..+..|..|.+..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999998888765
No 45
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=61.08 E-value=20 Score=29.58 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006350 319 LGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIG 359 (649)
Q Consensus 319 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ 359 (649)
|--|+.+.+.-..+.-+=+|.|.++|.-||.+|-.+.+...
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33455555556666666777888888888888888777643
No 46
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=59.46 E-value=1.6e+02 Score=32.94 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 006350 379 MEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTK 429 (649)
Q Consensus 379 ~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL~sk 429 (649)
++-...|-||+- |--.|-|-+|--++.+|.+=....+.-.++|-.-|..+
T Consensus 383 ~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 383 MAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 456679999977 88888887776666666555555555566666666554
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.52 E-value=48 Score=37.05 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=19.5
Q ss_pred CCCCcccCccccccccccchhhhHHHHHHHHhhhcccc
Q 006350 195 HHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEE 232 (649)
Q Consensus 195 t~s~ss~~~k~rl~e~~~~L~TS~ELlKVLnrIw~lee 232 (649)
=|++| ||+.+ =+++-.+|.++||.|-..-+
T Consensus 45 CPSGC------rLQgl--LdkqErDltkrINELKnqLE 74 (562)
T 3ghg_A 45 CPSGC------RMKGL--IDEVNQDFTNRINKLKNSLF 74 (562)
T ss_dssp EECHH------HHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred CCccc------chhhh--HHhhcCcHHHHHHHHHHHHH
Confidence 37888 77654 35666777777777754333
No 48
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=54.55 E-value=1.2e+02 Score=29.99 Aligned_cols=65 Identities=9% Similarity=0.163 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 239 TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELE 303 (649)
Q Consensus 239 Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe 303 (649)
.-+..|..+|...+.++.+|...-....-+++.+.|+...|+...+.---+++-..|-.+-+-|+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnle 123 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFE 123 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34678888999999999999988888888999999999999888777777777666666766665
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.67 E-value=96 Score=25.76 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCL 264 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s 264 (649)
|.+|+.|++.|..++.++......
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~ 31 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKA 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999888876644
No 50
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=53.23 E-value=1.4e+02 Score=28.13 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 254 QVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNA 333 (649)
Q Consensus 254 ~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~a 333 (649)
+++.+.++-.....+++.|-..|..+|-.||.-=..-+..+++. ++.=.+.--|...|.+
T Consensus 55 ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE------------Qqfl~~QedL~~DL~e-------- 114 (141)
T 3okq_A 55 KLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE------------QQFLTLQEELILDLKE-------- 114 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH--------
Confidence 34444444455555566666677889999997544444433332 3333344445555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 006350 334 MKELESEKRAKDIMEQVCDELARG 357 (649)
Q Consensus 334 lkelE~ERKaRellE~vCDELAkg 357 (649)
+|++--..=.++|.+|.|-.+.
T Consensus 115 --DL~ka~etf~lVeq~~~eq~k~ 136 (141)
T 3okq_A 115 --DLGKALETFDLIKLCCEEQEKN 136 (141)
T ss_dssp --HHHHHHHHHHHHHHHC------
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777778899999887664
No 51
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=53.14 E-value=59 Score=28.81 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 269 IEYLMKHF--AEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDI 346 (649)
Q Consensus 269 ie~L~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRel 346 (649)
|++|.-+| +|+.++-|..+-++++..|.-.+..+|.=--|+.+ +.=+-.|.+.||.+|+-
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Q------------------v~IY~~DF~aERadREk 65 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQ------------------ADIYKADFQAERHAREK 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 45555444 57777777766677776665555555332222222 33355789999999986
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHhhHHHH
Q 006350 347 MEQVCDELARGIGEDRAEFEELKRESAKVK 376 (649)
Q Consensus 347 lE~vCDELAkgI~edkaEVe~LKres~k~~ 376 (649)
| +.++.++...++.|.++..++.
T Consensus 66 l-------~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 66 L-------VEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp H-------HHTTSHHHHHHHHHHHTTC---
T ss_pred H-------HhHHHHHHHHHHHHHHHHHHHH
Confidence 5 4567777777777777655544
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.61 E-value=1.4e+02 Score=27.46 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAW 283 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~aw 283 (649)
.-|+.+|-+|+.-..+-+.+--.-.+.+..|+.-|.+||+.-
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~ 69 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888777777888999999998887654
No 53
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=52.47 E-value=1.6e+02 Score=28.04 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006350 307 KLKRQTERLNKKLGKELAETKAC 329 (649)
Q Consensus 307 k~Rrr~E~lnrKL~~ELaE~Kss 329 (649)
++=+.++.+..+|.++|.+++.-
T Consensus 92 ~l~~~~e~lr~~l~kdlEelr~k 114 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDVCGR 114 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655543
No 54
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=51.85 E-value=2.9e+02 Score=30.75 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH----hhHHHHHHHHHhHHHH-hhhHhhhHhhhhhhhhhhhhh
Q 006350 333 AMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR----ESAKVKEEMEKEREML-QLADVLREERVQMKLSEAKYH 407 (649)
Q Consensus 333 alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr----es~k~~eE~eeER~ML-qmAEvWREERVQMKL~eAk~~ 407 (649)
.-|+++.||..++.+|.-...|..-..+.++-++.-++ ....+.+.||+||+.+ +=-+.-.+.++|.+-.-.+..
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g 564 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888877666655554444332 2233444577777643 333444555555544444555
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 006350 408 FEEKNAAVERLRNELEAY 425 (649)
Q Consensus 408 leeK~s~vdkL~~elE~F 425 (649)
|.+|... |..||+.+
T Consensus 565 ~~~~~~~---~~~ei~~l 579 (592)
T 1f5n_A 565 FQKESRI---MKNEIQDL 579 (592)
T ss_dssp CHHHHHH---HHHHHHHH
T ss_pred HHHHHHH---HHHHHHHH
Confidence 6666544 44555544
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.81 E-value=83 Score=35.20 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKEL 323 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~EL 323 (649)
|...|..|+.+|++=.+.++-++..-+-+-.+|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 555666667666666666666666654444433
No 56
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.46 E-value=87 Score=34.27 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhH
Q 006350 218 KELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFA 277 (649)
Q Consensus 218 ~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~Kqla 277 (649)
.+|=..|.+| +..-.+.--+|.+|+..|...+.+|.+++.--+.+..+|+...+.+.
T Consensus 103 qeLe~~l~~l---sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 103 RDLKDRVAKF---SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 5555555555 22333444688899999999999988888766666666665555553
No 57
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.86 E-value=2.1e+02 Score=30.88 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006350 247 EVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREA 294 (649)
Q Consensus 247 EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aa 294 (649)
+..+.=..|.+++++++...++.+..+-++.+|-...-.-=+++|...
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666667777777777777544333333343333
No 58
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=47.59 E-value=2.3e+02 Score=28.30 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred hhHHHHHHHHhhhccccccCcchhHHHHHHHHHHH-HHH----HHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHH
Q 006350 216 ASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDR-ARV----QVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERER 290 (649)
Q Consensus 216 TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~-AR~----~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~ek 290 (649)
+|+||-.||-+|- + .-+.|.++|+. .++ =|.+|+.--..+.+-|....|++.-| +|.
T Consensus 69 ~skeLG~vL~qis---~-------~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e---~k~----- 130 (222)
T 3ok8_A 69 TSQILGEILVQMS---D-------TQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIE---YRH----- 130 (222)
T ss_dssp SCHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----
T ss_pred chhHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhH-----
Confidence 4678888888884 2 23344444444 332 24455555555555566666665544 111
Q ss_pred HHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006350 291 IREAISCIAEELEVE-KKLK----RQTERLNKKLGKELA-ETKACLSNAMKELESEKRAKDIMEQVCDELARGIGED 361 (649)
Q Consensus 291 i~aai~slk~ELe~E-Rk~R----rr~E~lnrKL~~ELa-E~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ed 361 (649)
-.+.+.-.+.||..= ||.. +-.|.++.+=. ||- =+..++..|| +|..||=+-|+|.-|- |++-+-.|
T Consensus 131 ~~~~leK~~~elkK~~rksqk~~~k~~e~v~~~q~-el~~f~~~s~r~Al--~EErRRYcFL~ekhc~-~~~~~~~~ 203 (222)
T 3ok8_A 131 RAANLEKCMSELWRMERKRDKNAREMKESVNRLHA-QMQAFVSESKRAAE--LEEKRRYRFLAEKHLL-LSNTFLQF 203 (222)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHh-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 122233344444222 2211 11444444322 221 1223333333 5777888999999995 55544433
No 59
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=42.10 E-value=53 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 006350 242 SAIRAEVDRARVQVDQLIKEQCLNHSEIEYLM 273 (649)
Q Consensus 242 ~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~ 273 (649)
..|+.||...+.++++|+++.+....+++.+-
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888877665554444443
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.20 E-value=1.1e+02 Score=27.67 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 253 VQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAET 326 (649)
Q Consensus 253 ~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~ 326 (649)
..|..|.+|-...+.+++.|+- --.+.-..++..|-.|..||+.=|+.++++=.-|..|-.|+.+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~--------E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKT--------ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777777621 11233556677788888888888888888777777777777754
No 61
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.87 E-value=1.7e+02 Score=24.86 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 006350 290 RIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEEL 368 (649)
Q Consensus 290 ki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 368 (649)
....-+..+++.|+.+-+.|+.+|.-+.+|..|-.+.... -.=+|+.|+.|...-.+.+..|..|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577788899999999999999999998887765443 2334667777766655555555554
No 62
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=40.60 E-value=29 Score=29.27 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAA 282 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~a 282 (649)
|--+..||+++++.|+.|++|--..+-.|=+|---||.||.+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 778899999999999999999888888888888877776644
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.58 E-value=39 Score=31.12 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=35.9
Q ss_pred cchhHHHHH--HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHH
Q 006350 236 SGITLISAI--RAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKA 281 (649)
Q Consensus 236 s~~Slv~aL--k~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~ 281 (649)
..++++.|| --||-.++.++.+|.++-....+|+..|-..+..-+.
T Consensus 56 ~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~ 103 (138)
T 3hnw_A 56 ELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666664 4689999999999999998888888888877765433
No 64
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.90 E-value=2.7e+02 Score=26.78 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 311 QTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
.++..--.|-+|++.+.+ .|+.||+.|...+++-.||=..|.....|++.+|..-.++
T Consensus 59 ~L~~~k~~Leke~~~LQa-------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQA-------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666555 5667999999999999999888888888888888765554
No 65
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.73 E-value=3.6e+02 Score=27.83 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhcccHHHHHHHH
Q 006350 348 EQVCDELARGIGEDRAEFEELK 369 (649)
Q Consensus 348 E~vCDELAkgI~edkaEVe~LK 369 (649)
|.-..+|-.+|.+.++||+++|
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 449 EGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445556666666666665
No 66
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=37.18 E-value=2.4e+02 Score=26.27 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 288 RERIREAISCIAEELEVEKKLKRQTERLNKKLGK 321 (649)
Q Consensus 288 ~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ 321 (649)
-+.++.-|.-+.+||-. ++++++|.|..+|+-
T Consensus 113 ~e~lr~~l~Py~~el~~--~~~~~~e~Lr~~L~p 144 (185)
T 3r2p_A 113 MELYRQKVEPLRAELQE--GARQKLHELQEKLSP 144 (185)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHTTTTTTSHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHH
Confidence 34444444444444433 444455555544443
No 67
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.82 E-value=2.3e+02 Score=25.30 Aligned_cols=69 Identities=23% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350 295 ISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR 370 (649)
Q Consensus 295 i~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 370 (649)
...|...|..|+-+-..+|-...+|...-.+...-+.-+-..||. .|+.+++|...-...+.++..|+.
T Consensus 50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee-------eee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED-------EEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666554444433333333333333 344444554444444555555444
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.75 E-value=2.8e+02 Score=26.35 Aligned_cols=77 Identities=22% Similarity=0.180 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKL 319 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL 319 (649)
+|+-++++++ .|..|..|....+.+|..|- +-..-|+|--+.+++.+.+++-++..=-.-.++++.=|.+|
T Consensus 59 ~vs~~~~~~~----~I~~L~~El~~l~~ki~dLe-----eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALLN----TLAILQKELKSKEQEIRRLK-----EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555533 55566655555444444332 22333566677788888888887766555555666667776
Q ss_pred HHHHHH
Q 006350 320 GKELAE 325 (649)
Q Consensus 320 ~~ELaE 325 (649)
+.=+-.
T Consensus 130 V~RWM~ 135 (152)
T 3a7p_A 130 VARWLK 135 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 69
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=36.72 E-value=3.8e+02 Score=27.81 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 006350 306 KKLKRQTERLNKKLGKELAETK-ACLSNAMKELES 339 (649)
Q Consensus 306 Rk~Rrr~E~lnrKL~~ELaE~K-ss~~~alkelE~ 339 (649)
++.||..+....||.+++..+- ..+.++.+.|+.
T Consensus 111 ~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~ 145 (406)
T 4dyl_A 111 QQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRA 145 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666667666666554 455555554444
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.48 E-value=75 Score=33.54 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCL 264 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s 264 (649)
|.+|+.||...+..+.+|+++-..
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~ 28 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKD 28 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544433
No 71
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=36.06 E-value=3.1e+02 Score=26.51 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 006350 291 IREAISCIAEELE 303 (649)
Q Consensus 291 i~aai~slk~ELe 303 (649)
+..+...|..+++
T Consensus 65 ~~~aw~~~~~~~e 77 (290)
T 3i2w_A 65 TEAAWKGVLTESE 77 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 72
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.78 E-value=2.2e+02 Score=26.15 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHH
Q 006350 298 IAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKE 377 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~e 377 (649)
+.+||-..+.--..++.....+.+|+.+.|.-+..+--.+|. +-+++.+++.++.+|..+..++.-
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~--------------~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES--------------SAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665555555555555555666666666555444333333 334555555566666655555433
Q ss_pred H
Q 006350 378 E 378 (649)
Q Consensus 378 E 378 (649)
+
T Consensus 132 ~ 132 (138)
T 3hnw_A 132 E 132 (138)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=35.54 E-value=5.1e+02 Score=28.90 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHhHHHHhhhHhhh---Hhhhhhhhhhhhhhhhhhh-HHHHHHHHHHHHHHhhccC
Q 006350 378 EMEKEREMLQLADVLR---EERVQMKLSEAKYHFEEKN-AAVERLRNELEAYLGTKKG 431 (649)
Q Consensus 378 E~eeER~MLqmAEvWR---EERVQMKL~eAk~~leeK~-s~vdkL~~elE~FL~sk~~ 431 (649)
+-+-++..-||+.-.. ..||.--+...+..+++|. ..++..+.+|+.-+.-|+.
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 655 (695)
T 2j69_A 598 KKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQT 655 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777774443 4666666666666666664 4567777777777776653
No 74
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.98 E-value=2.2e+02 Score=24.59 Aligned_cols=40 Identities=33% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHhhhcccHHHHHHHHHhhHHHHHHH-HHhHHHHhhhH
Q 006350 351 CDELARGIGEDRAEFEELKRESAKVKEEM-EKEREMLQLAD 390 (649)
Q Consensus 351 CDELAkgI~edkaEVe~LKres~k~~eE~-eeER~MLqmAE 390 (649)
..+++.+|...++|.+.|..+-.+.|.+. ..-+.++.+-+
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999988877777653 45566665544
No 75
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=32.77 E-value=3.7e+02 Score=26.41 Aligned_cols=120 Identities=9% Similarity=0.137 Sum_probs=58.1
Q ss_pred ccccccccccchhhhHHHHHHHHhhhcccccc-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHH
Q 006350 203 IKTRLKDVSSGLTASKELLKVLNRIWGIEEQH-SSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKA 281 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVLnrIw~leeq~-~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~ 281 (649)
|-....++...|......+.-|.++- .... +....-.+.++.+|+.....|+.+....+..=+.|+...+++....
T Consensus 46 F~~~~~~I~~~I~~i~~~l~~L~~l~--~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~- 122 (279)
T 2xhe_B 46 FFNRVKRIRDNIEDIEQAIEQVAQLH--TESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEG- 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 44556666666666666666666553 1110 1111223356667766666666666554433222222222221000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 282 AWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKR 342 (649)
Q Consensus 282 awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERK 342 (649)
.|...- -.+|- +.......+|++.|.++=..|.++...|.+.-|
T Consensus 123 ~~~~~~--------------~~~e~---r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k 166 (279)
T 2xhe_B 123 TFEDGT--------------VSTDL---RIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYG 166 (279)
T ss_dssp CCSTTC--------------CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCC--------------chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00011 233456677888888877777777776654333
No 76
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=32.52 E-value=2.6e+02 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 297 CIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESE 340 (649)
Q Consensus 297 slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~E 340 (649)
-|+.|+|.| +|.+.+|.-.=|-|+.+++.+-.|+|+.-
T Consensus 61 qLkse~e~E------~ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 61 ILKAELERK------MAEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655 78888888777888888887777776654
No 77
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.51 E-value=66 Score=34.69 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=26.0
Q ss_pred ccccccccccchhhhHHHHHHHHhhhccccccCc
Q 006350 203 IKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSS 236 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s 236 (649)
.+..|.++++.=.+..++++.|..+|...+.+..
T Consensus 43 L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~ 76 (411)
T 3ghg_C 43 LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKP 76 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCC
Confidence 5556777777777889999999999966665554
No 78
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=31.93 E-value=3e+02 Score=29.53 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=31.0
Q ss_pred ccccccccchhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 006350 205 TRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEY 271 (649)
Q Consensus 205 ~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~ 271 (649)
.+|.++..+....+-||+.|..+. +++.+.-..+..-|..=-..|+..+.+|..+-...++.+..
T Consensus 246 ~KL~d~Ks~~d~k~TLLhylv~~v--~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~ 310 (483)
T 2j1d_G 246 NKIADTKSSIDKNITLLHYLITIV--ENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKA 310 (483)
T ss_dssp GGGGGSBCSSCTTCBHHHHHHHHH--HHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccCCCCCccHHHHHHHHH--HHhCchhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 467777765544555888887763 44433322222211111123444455555554444443333
No 79
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=31.48 E-value=3.1e+02 Score=29.92 Aligned_cols=7 Identities=57% Similarity=0.871 Sum_probs=3.8
Q ss_pred cceEEEe
Q 006350 45 KRAILVG 51 (649)
Q Consensus 45 Kr~iLvg 51 (649)
...||||
T Consensus 335 ~~VvLvG 341 (605)
T 4b9q_A 335 DDVILVG 341 (605)
T ss_dssp SEEEEES
T ss_pred cEEEEeC
Confidence 3456664
No 80
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=31.46 E-value=98 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 298 IAEELEVEKKLKRQTERLNKKLGKELA 324 (649)
Q Consensus 298 lk~ELe~ERk~Rrr~E~lnrKL~~ELa 324 (649)
++.=|+.|.|+|+++|.+=+|+.+...
T Consensus 26 ~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 26 MKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344488899999999999999877654
No 81
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.40 E-value=68 Score=28.92 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 006350 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEY 271 (649)
Q Consensus 238 ~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~ 271 (649)
++-+.||..||..++.+|.+|.++-...+-.++.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999888876554444443
No 82
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=30.79 E-value=4.5e+02 Score=26.84 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=18.5
Q ss_pred ccchhhhHHHHHHHHhhhccccccCcc
Q 006350 211 SSGLTASKELLKVLNRIWGIEEQHSSG 237 (649)
Q Consensus 211 ~~~L~TS~ELlKVLnrIw~leeq~~s~ 237 (649)
-.++++.+||+..|-.==.||+.|+-+
T Consensus 24 K~s~~~~Ke~~~flkKRa~lE~E~Ak~ 50 (279)
T 3qwe_A 24 KTWSRYAKELLAWTEKRASYELEFAKS 50 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888877666777777643
No 83
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=30.75 E-value=4e+02 Score=26.27 Aligned_cols=188 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 006350 227 IWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERE--RIREAISCIAEELEV 304 (649)
Q Consensus 227 Iw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~e--ki~aai~slk~ELe~ 304 (649)
.|+. ..+-.+..--.-=-..-..|..+.+|+-....+-..-+.+|+..-.....+..+ -+..+...|..|+
T Consensus 16 FW~~-----~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~~~~~gtl~~aw~~~~~e~-- 88 (337)
T 2x3v_A 16 FWEV-----GNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEA-- 88 (337)
T ss_dssp TTST-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH--
T ss_pred CCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 305 EKKLKRQTERLNKKLGKEL-AETKACLSNAMKELESE-----KRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 305 ERk~Rrr~E~lnrKL~~EL-aE~Kss~~~alkelE~E-----RKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
.+.-..|..|+..| .++-.-|....+|+... -|.+.-++..-..+.+.+..-..+|+..|..-...+.|
T Consensus 89 -----e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e 163 (337)
T 2x3v_A 89 -----DKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKE 163 (337)
T ss_dssp -----HHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHhhhHhh-------------hHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 006350 379 MEKEREMLQLADVL-------------REERVQMKLSEAKYHFEEKNAAVERLRNELEAYL 426 (649)
Q Consensus 379 ~eeER~MLqmAEvW-------------REERVQMKL~eAk~~leeK~s~vdkL~~elE~FL 426 (649)
.+.-+..+.-+..= +.++.+.++..|+.........++..+.+.+.-+
T Consensus 164 ~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~ 224 (337)
T 2x3v_A 164 ERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGM 224 (337)
T ss_dssp HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
No 84
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=29.94 E-value=1.6e+02 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q 006350 248 VDRARVQVDQLIKEQCLNHSEIEYLMKHF 276 (649)
Q Consensus 248 L~~AR~~I~eL~~E~~s~~~eie~L~Kql 276 (649)
|--.-.-|+.|.+|...|++|++..-.++
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~ri 37 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKI 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888888776554444
No 85
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.88 E-value=2e+02 Score=25.86 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=20.6
Q ss_pred HHHHHhhhcccHHHHHHHHHhhHHHHHH
Q 006350 351 CDELARGIGEDRAEFEELKRESAKVKEE 378 (649)
Q Consensus 351 CDELAkgI~edkaEVe~LKres~k~~eE 378 (649)
..++-..|.+.++||+.|+.+...++.|
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577888999999999887766533
No 86
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=29.51 E-value=4.3e+02 Score=26.28 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=88.0
Q ss_pred HHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHH------HHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006350 220 LLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQL------IKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIRE 293 (649)
Q Consensus 220 LlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL------~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~a 293 (649)
+++..|=+| ++--...-.+.+||++=...+.+=+.-| -..-+.. ++|-..+.++++--..-.++-..-.++
T Consensus 23 im~~~~P~~--e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs-~elG~~L~~i~~~~r~ie~~l~~~~~~ 99 (253)
T 2ykt_A 23 IMEQFNPSL--RNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGS-KELGDVLFQMAEVHRQIQNQLEEMLKS 99 (253)
T ss_dssp HHHTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566 5555555567788877776666554444 2222344 788888888888655555555555566
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhcccHH
Q 006350 294 A----ISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKD------IMEQVCDELARGIGEDRA 363 (649)
Q Consensus 294 a----i~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRe------llE~vCDELAkgI~edka 363 (649)
. |..|+..+|.-.| -+-.+.++..+|......++.++..|+-+-+|.+. .++++-++....|.+-+.
T Consensus 100 ~~~~li~pL~~kie~d~K---~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~ 176 (253)
T 2ykt_A 100 FHNELLTQLEQKVELDSR---YLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQG 176 (253)
T ss_dssp HHTTTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 5 6666666665553 34455577777888888888888877766665432 112222444444555555
Q ss_pred HHHHHHHhhH
Q 006350 364 EFEELKRESA 373 (649)
Q Consensus 364 EVe~LKres~ 373 (649)
++++.-+++.
T Consensus 177 ~le~~~~~~l 186 (253)
T 2ykt_A 177 ELENYVSDGY 186 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 87
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.59 E-value=3.3e+02 Score=24.63 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTER 314 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~ 314 (649)
+.+.+..++++|+.++..|+.+|.
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~ 34 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELED 34 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 88
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.41 E-value=3.3e+02 Score=29.72 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=25.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYL 272 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L 272 (649)
..+--|.+|-.+.-..+.++.+|.+++....++|-.+
T Consensus 67 ~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 67 KDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888888887776666555543
No 89
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=26.95 E-value=3.3e+02 Score=29.71 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 006350 342 RAKDIMEQVCDELAR 356 (649)
Q Consensus 342 KaRellE~vCDELAk 356 (649)
.+.+-|+++|+.|+.
T Consensus 586 ~~~~~l~~~~~~~~~ 600 (605)
T 4b9q_A 586 AKMQELAQVSQKLME 600 (605)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555543
No 90
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.20 E-value=87 Score=33.61 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.5
Q ss_pred ccccccccccchhhhHHHHHHHHhhhccccccCc
Q 006350 203 IKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSS 236 (649)
Q Consensus 203 ~k~rl~e~~~~L~TS~ELlKVLnrIw~leeq~~s 236 (649)
++..|+++.+.-.+..+|++.|...|...+.+..
T Consensus 43 LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~ 76 (409)
T 1m1j_C 43 IEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLP 76 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 5667888888888999999999999977554443
No 91
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.03 E-value=1.5e+02 Score=32.63 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHhhhcccHHHHHHHHHhhHH
Q 006350 354 LARGIGEDRAEFEELKRESAK 374 (649)
Q Consensus 354 LAkgI~edkaEVe~LKres~k 374 (649)
|+.++.++.++|..|..++.+
T Consensus 410 l~~~~~~~~~~~~~~~~~~~~ 430 (575)
T 2i1j_A 410 LEDEIRAKQEEVSRIQQEVEL 430 (575)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655443
No 92
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.95 E-value=2e+02 Score=27.52 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhchhHHHHHH
Q 006350 252 RVQVDQLIKEQCLNHSEIEYLM 273 (649)
Q Consensus 252 R~~I~eL~~E~~s~~~eie~L~ 273 (649)
|..+.+|.++....+.++..|+
T Consensus 84 r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 84 YTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 93
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.66 E-value=1.7e+02 Score=23.21 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 313 ERLNKKLGKELAETKACLSNAMKELES 339 (649)
Q Consensus 313 E~lnrKL~~ELaE~Kss~~~alkelE~ 339 (649)
..-|.||+..|.+++.-+.+.-.++|+
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334888888888766655555544443
No 94
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=23.38 E-value=6e+02 Score=25.81 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLG 320 (649)
Q Consensus 241 v~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~ 320 (649)
|..|..+... +.-+|..++.. .+.+..-.++.+--..-+.=-.+.=.+-+.-|++-.|.|.| -|+++++
T Consensus 76 v~el~~~q~~---el~~l~~~q~~--eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~K------ELkk~q~ 144 (251)
T 1jad_A 76 VVELKERLEM---ELIHLGEEYHD--GIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIK------DIKKKLE 144 (251)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHH----HHHHHHHhhHHHHHHHHHhHHHHh
Q 006350 321 KELAETKACLS-NAMKELESEKRAKDIMEQVCDELARGIGEDRA----EFEELKRESAKVKEEMEKEREMLQ 387 (649)
Q Consensus 321 ~ELaE~Kss~~-~alkelE~ERKaRellE~vCDELAkgI~edka----EVe~LKres~k~~eE~eeER~MLq 387 (649)
+.=.|.=.++. +-...-|+||+-|++-...-++|..+|+-... +.+.|+.......++++.|+-+||
T Consensus 145 kks~e~i~e~~~ktK~K~e~Er~~rEin~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~ 216 (251)
T 1jad_A 145 AKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQ 216 (251)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
No 95
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.38 E-value=79 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 006350 236 SGITLISAIRAEVDRARVQVDQLIKEQCLNHSE 268 (649)
Q Consensus 236 s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~e 268 (649)
.+.+=|-+|+.|++..|.+|.+|.++....+.+
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668999999999999999999887655543
No 96
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=23.15 E-value=5.8e+02 Score=25.55 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 254 QVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKL 319 (649)
Q Consensus 254 ~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL 319 (649)
.|-.|+..-+.+.++|+-|-+++++=-.-+-.=.|=|++ .+||+--+|+-.+.++--+||
T Consensus 99 eiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlK------vdELEK~~KdSeKI~RNQsKL 158 (294)
T 3caz_A 99 EIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVK------LDNLEKKNKDQERIERNQQKF 158 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------HHHHHhccchHHHHHHhHHHh
Confidence 466677777888888888888887654444444444444 356666666655555555664
No 97
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=22.60 E-value=6e+02 Score=25.54 Aligned_cols=152 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHhhhccccccCcch-hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHH
Q 006350 210 VSSGLTASKELLKVLNRIWGIEEQHSSGI-TLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKER 288 (649)
Q Consensus 210 ~~~~L~TS~ELlKVLnrIw~leeq~~s~~-Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~ 288 (649)
+.++--+++||-.+|-+|-..--.-.+.. ..+++|..|| |..|++--....+.|..+-|.++.+ .-...-|.
T Consensus 68 A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~el------i~pLe~k~e~d~k~~~~~~K~~~~~-~k~~r~el 140 (253)
T 2d1l_A 68 ATNTRGGTREIGSALTRMCMRHRSIEAKLRQFSSALIDCL------INPLQEQMEEWKKVANQLDKDHAKE-YKKARQEI 140 (253)
T ss_dssp HHTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 289 ERIREAISCIAEELEVEKKLKR---------------QTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDE 353 (649)
Q Consensus 289 eki~aai~slk~ELe~ERk~Rr---------------r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDE 353 (649)
+|-...+..++ ||+|+ .++.+|.|...=-.-.+.++..| -+|..||=.-+++.+|-=
T Consensus 141 kk~~~~~~k~q------kK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A--L~EERrRycflv~~l~pv 212 (253)
T 2d1l_A 141 KKKSSDTLKLQ------KKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA--LIEERGRFCTFISMLRPV 212 (253)
T ss_dssp HHHHHHHHHHH------HHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH------HHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHH
Q ss_pred HHhhhcccHHHHHHHHHhhHHHHH
Q 006350 354 LARGIGEDRAEFEELKRESAKVKE 377 (649)
Q Consensus 354 LAkgI~edkaEVe~LKres~k~~e 377 (649)
+-.++.=.. |+..|........+
T Consensus 213 ~~~e~~~~~-e~~~l~~~l~~~~~ 235 (253)
T 2d1l_A 213 IEEEISMLG-EITHLQTISEDLKS 235 (253)
T ss_dssp HHHHHGGGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHH
No 98
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.32 E-value=4.2e+02 Score=23.61 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 006350 241 ISAIRAEVDRARVQV 255 (649)
Q Consensus 241 v~aLk~EL~~AR~~I 255 (649)
|..|..||+..+.+.
T Consensus 47 iq~L~~el~~l~~~~ 61 (131)
T 3tnu_A 47 MQNLEIELQSQLSMK 61 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH
Confidence 344444444443333
No 99
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=22.04 E-value=29 Score=24.50 Aligned_cols=6 Identities=33% Similarity=1.043 Sum_probs=4.1
Q ss_pred CCcccc
Q 006350 66 VPAWKT 71 (649)
Q Consensus 66 ~PtWkl 71 (649)
.|.|.|
T Consensus 16 tpdwml 21 (29)
T 1cn3_F 16 TPDWML 21 (29)
T ss_dssp EEGGGH
T ss_pred CchhhH
Confidence 467876
No 100
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=21.82 E-value=6.4e+02 Score=25.57 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=16.0
Q ss_pred Hhhhhhhhhhhhhhhhhhh-HHHHHHH
Q 006350 394 EERVQMKLSEAKYHFEEKN-AAVERLR 419 (649)
Q Consensus 394 EERVQMKL~eAk~~leeK~-s~vdkL~ 419 (649)
+|.+++|+..++--.+.-. +++++|+
T Consensus 197 eekl~~KmE~~kEnRea~~~a~~ErL~ 223 (240)
T 4f61_I 197 KEKLAQKMESNKENREAHFAAMLERLQ 223 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7888888888775444333 2355554
No 101
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.80 E-value=5.1e+02 Score=24.47 Aligned_cols=95 Identities=24% Similarity=0.264 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhh
Q 006350 322 ELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKL 401 (649)
Q Consensus 322 ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL 401 (649)
||.|.+-.+-=..+=|+.|+-.-.-|-+-..---++|+-.+||...+.|+.+|+..-+ -|.=+|-..-=.+= -||
T Consensus 26 eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L--krn~~qQnQQSlDi---RKL 100 (167)
T 4gkw_A 26 QLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL--KRNSQQQNQQSLDM---RKL 100 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH--HhhhHHHhHhhhhH---HHH
Confidence 3444444444444555555544333443333445778888888888888877764332 22222222222222 267
Q ss_pred hhhhhhhhhhhHHHHHHHHH
Q 006350 402 SEAKYHFEEKNAAVERLRNE 421 (649)
Q Consensus 402 ~eAk~~leeK~s~vdkL~~e 421 (649)
-+-..+|-||-+.|+-|..-
T Consensus 101 rELEADLKEKDsMVe~LT~T 120 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTET 120 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHH
Confidence 77788899999998876543
No 102
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.64 E-value=6.6e+02 Score=27.11 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhh
Q 006350 345 DIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAK 405 (649)
Q Consensus 345 ellE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk 405 (649)
.=.|++|.|+..+++ ..++-||+. |..-+- .|-.|=-+.++.|+.||-.|.+
T Consensus 105 ~dndn~~~e~s~eLe---~~i~~lk~~---V~~q~~---~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 105 NNNDNTFKQINEDLR---SRIEILRRK---VIEQVQ---RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred ccchHHHHHHHHHHH---HHHHHHHHH---HHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666776665543 334444443 222222 2333344566666666655543
No 103
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.98 E-value=4.7e+02 Score=23.67 Aligned_cols=40 Identities=33% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006350 311 QTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELAR 356 (649)
Q Consensus 311 r~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 356 (649)
-+|.+=..|-...+.++.++..-|..|-..| |.||+||-+
T Consensus 56 ~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R------e~V~~eL~r 95 (112)
T 1x79_B 56 ASEILLEELQQGLSQAKRDVQEQMAVLMQSR------EQVSEELVR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 4555544555555555555555555555554 467777654
No 104
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.84 E-value=7.6e+02 Score=27.41 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=5.4
Q ss_pred hcccHHHHHHHHH
Q 006350 358 IGEDRAEFEELKR 370 (649)
Q Consensus 358 I~edkaEVe~LKr 370 (649)
+...+.|+..|++
T Consensus 569 ~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 569 SRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 105
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.12 E-value=2.1e+02 Score=27.27 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=0.0
Q ss_pred ccccccc
Q 006350 160 SHELQVS 166 (649)
Q Consensus 160 ~q~l~~~ 166 (649)
|+|+++.
T Consensus 3 ~~~~~~~ 9 (175)
T 3lay_A 3 HHHHHSS 9 (175)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3444443
Done!