Query 006350
Match_columns 649
No_of_seqs 97 out of 110
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 22:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006350.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006350hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 66.6 22 0.0016 29.8 10.5 30 307-336 71-100 (144)
2 d2efla1 a.238.1.4 (A:1-288) Fo 59.0 55 0.004 28.4 23.2 82 296-377 100-181 (288)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 50.9 14 0.001 31.1 6.4 28 310-337 63-90 (144)
4 d2efka1 a.238.1.4 (A:10-288) C 46.2 87 0.0064 26.9 22.7 80 297-376 92-171 (279)
5 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 38.0 16 0.0012 28.6 4.2 40 240-279 27-66 (67)
6 d2elba1 a.238.1.1 (A:6-273) DC 37.7 1.3E+02 0.0093 26.4 13.7 17 340-356 185-201 (268)
7 d1j1ja_ a.118.16.1 (A:) Transl 29.4 1.6E+02 0.012 25.9 10.3 42 291-332 3-44 (217)
8 d2p90a1 c.56.8.1 (A:6-274) Hyp 25.7 55 0.004 29.8 6.4 56 213-279 205-260 (269)
9 d1h7ca_ a.7.5.1 (A:) Tubulin c 22.8 95 0.0069 25.4 6.7 75 347-430 9-83 (103)
10 d1h7ca_ a.7.5.1 (A:) Tubulin c 18.1 1.3E+02 0.0098 24.4 6.7 89 255-350 13-101 (103)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=66.56 E-value=22 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 307 KLKRQTERLNKKLGKELAETKACLSNAMKE 336 (649)
Q Consensus 307 k~Rrr~E~lnrKL~~ELaE~Kss~~~alke 336 (649)
++.+.+|.|-.+|..+|.+++.-+...+.+
T Consensus 71 ~l~~~~e~lr~~l~~~lee~r~kl~~~~ee 100 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDVRGRLVQYRGE 100 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777766655444433
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.96 E-value=55 Score=28.38 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHH
Q 006350 296 SCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKV 375 (649)
Q Consensus 296 ~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~ 375 (649)
+.+..-+.+-++.|+.+...-.|+.++|......+.++.+.|..--+.-+-+...+..+.....--+.+++.++.+..+.
T Consensus 100 ~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~ 179 (288)
T d2efla1 100 VDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIR 179 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHH
Confidence 33444444455566666666666666666666666666666654443333333333333344444445555555444444
Q ss_pred HH
Q 006350 376 KE 377 (649)
Q Consensus 376 ~e 377 (649)
..
T Consensus 180 ~~ 181 (288)
T d2efla1 180 HQ 181 (288)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=50.88 E-value=14 Score=31.09 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 310 RQTERLNKKLGKELAETKACLSNAMKEL 337 (649)
Q Consensus 310 rr~E~lnrKL~~ELaE~Kss~~~alkel 337 (649)
.-++.+..||..++.+++..+...+.++
T Consensus 63 p~~~e~~~~l~~~~e~lr~~l~~~lee~ 90 (144)
T d1gs9a_ 63 PVAEETRARLSKELQAAQARLGADMEDV 90 (144)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555666666666666555555554
No 4
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.25 E-value=87 Score=26.93 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhHHHH
Q 006350 297 CIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVK 376 (649)
Q Consensus 297 slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 376 (649)
.+..-+..-++.|+....--.++.++|.+....+.++.+.|..-.+.-+-+......+.....--+.++..++.+..+..
T Consensus 92 ~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~ 171 (279)
T d2efka1 92 ELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRS 171 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 34444444445555555555566666666666555555555443322222222222222323333444454444444433
No 5
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.95 E-value=16 Score=28.58 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHH
Q 006350 240 LISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEE 279 (649)
Q Consensus 240 lv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEE 279 (649)
-|-.+..||+++++.|+.|+++--..+-.+-+|---||.|
T Consensus 27 sV~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA~e 66 (67)
T d1k1fa_ 27 SVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKE 66 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3788999999999999999999877776676766655543
No 6
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.70 E-value=1.3e+02 Score=26.41 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006350 340 EKRAKDIMEQVCDELAR 356 (649)
Q Consensus 340 ERKaRellE~vCDELAk 356 (649)
+++..++++.+|.=+.-
T Consensus 185 ~~k~~~~l~~l~~~~~a 201 (268)
T d2elba1 185 YKKKIALLEPLLGYMQA 201 (268)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888888888765443
No 7
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.39 E-value=1.6e+02 Score=25.95 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 291 IREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSN 332 (649)
Q Consensus 291 i~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~ 332 (649)
|.++..++++||+.+-..|.++-.+-|.+.+.-..+-.++.+
T Consensus 3 ~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr 44 (217)
T d1j1ja_ 3 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQG 44 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988888887766665555544
No 8
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=25.69 E-value=55 Score=29.76 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=42.2
Q ss_pred chhhhHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHH
Q 006350 213 GLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEE 279 (649)
Q Consensus 213 ~L~TS~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEE 279 (649)
.-+++..||++|+.|.+++= . +..|..+-+..+.+|++|+++- .|+..++.+|.+.
T Consensus 205 dP~AA~~lL~~l~~~~gl~i---d----~~~L~e~Ae~~e~~i~~l~e~~----~e~~~~v~~LE~~ 260 (269)
T d2p90a1 205 YPAATLKLLQSIADSADLNL---P----LLALERDAEKVHRQLMEQTEES----SEIQRVVGALEQQ 260 (269)
T ss_dssp CHHHHHHHHHHHHHHHTCCC---C----CHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCC---C----hHHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHh
Confidence 46789999999999987652 2 6778888888899999888875 4555566655544
No 9
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.78 E-value=95 Score=25.40 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHhhHHHHHHHHHhHHHHhhhHhhhHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 006350 347 MEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYL 426 (649)
Q Consensus 347 lE~vCDELAkgI~edkaEVe~LKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE~FL 426 (649)
--.+|..|.|+..-|+.||........++..+-..+..+=+--+|.-| .+.-+-+=..-|.....+|+.||
T Consensus 9 ktgvvkRL~KE~~~Y~kE~~~q~~k~ek~k~~~~dey~iKkq~~vl~E---------s~~mipd~~~Rl~~a~~~L~~~l 79 (103)
T d1h7ca_ 9 KTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQE---------SRMMIPDCQRRLEAAYLDLQRIL 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHH---------HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHH
Confidence 345677777777778888877777777776554444444444444332 22333333444556677888899
Q ss_pred hhcc
Q 006350 427 GTKK 430 (649)
Q Consensus 427 ~sk~ 430 (649)
..-.
T Consensus 80 ~~e~ 83 (103)
T d1h7ca_ 80 ENEK 83 (103)
T ss_dssp HHCG
T ss_pred HHCC
Confidence 7643
No 10
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.08 E-value=1.3e+02 Score=24.44 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350 255 VDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAM 334 (649)
Q Consensus 255 I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss~~~al 334 (649)
|+.|++|...|++|++....++ +++.--..+.-.|+...+.+++=.--=--.++|++....+|-.=|.+-+. +
T Consensus 13 vkRL~KE~~~Y~kE~~~q~~k~--ek~k~~~~dey~iKkq~~vl~Es~~mipd~~~Rl~~a~~~L~~~l~~e~~-----~ 85 (103)
T d1h7ca_ 13 VRRLVKERVMYEKEAKQQEEKI--EKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKD-----L 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCGG-----G
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCC-----c
Q ss_pred HHHHHHHHHHHHHHHH
Q 006350 335 KELESEKRAKDIMEQV 350 (649)
Q Consensus 335 kelE~ERKaRellE~v 350 (649)
++-|.=..|+++|+++
T Consensus 86 ~~~ee~~~A~~~l~~a 101 (103)
T d1h7ca_ 86 EEAEEYKEARLVLDSV 101 (103)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhh
Done!