BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>006351
MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICE
LSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQL
MVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS
LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSF
PEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSL
NVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESL
FAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHE
RLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGP
RTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQA
GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCL
FSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

High Scoring Gene Products

Symbol, full name Information P value
l(3)76BDm
lethal (3) 76BDm
protein from Drosophila melanogaster 2.9e-09
TRAPPC8
Trafficking protein particle complex subunit 8
protein from Homo sapiens 2.6e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  006351
        (649 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0260655 - symbol:l(3)76BDm "lethal (3) 76BDm" spec...   153  2.9e-09   2
UNIPROTKB|Q9Y2L5 - symbol:TRAPPC8 "Trafficking protein pa...    93  2.6e-05   3


>FB|FBgn0260655 [details] [associations]
            symbol:l(3)76BDm "lethal (3) 76BDm" species:7227 "Drosophila
            melanogaster" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR011990 EMBL:AE014296
            Gene3D:1.25.40.10 InterPro:IPR013935 Pfam:PF08626
            InterPro:IPR024420 PANTHER:PTHR12975 Pfam:PF12739
            GeneTree:ENSGT00390000000568 FlyBase:FBgn0260655 EMBL:BT133116
            RefSeq:NP_649135.2 IntAct:Q9VW22 MINT:MINT-311414
            EnsemblMetazoa:FBtr0074966 EnsemblMetazoa:FBtr0333896 GeneID:40140
            KEGG:dme:Dmel_CG8793 UCSC:CG8793-RA InParanoid:Q9VW22 OMA:LEQASYC
            GenomeRNAi:40140 NextBio:817202 Uniprot:Q9VW22
        Length = 1319

 Score = 153 (58.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 52/190 (27%), Positives = 89/190 (46%)

Query:    26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEES 85
             E+ + V GEP+++ +   N +Q  I++S I L+ +L+  +DE+ S  N+ T E  +D  +
Sbjct:   747 ETPVAVQGEPIELAVTLSNSVQCRIALSEIDLLWKLTLDNDEVLS--NACTYEESSDSAN 804

Query:    86 KLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG---- 141
             K+        S  +S  L+E        ET+  +L  TPK+ G L I+GV  R++     
Sbjct:   805 KIAVGAAIKTSCMASIKLAEQ-----AEETLHFKL--TPKLTGRLSILGVVCRVAAGADP 857

Query:   142 --SLVGVYNFESNLXXXXXXXXXXXXXSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGD 199
               SL+G   FE+                   N L   ++  LP +     P+P R  AG+
Sbjct:   858 AASLLGTLQFETQKIRPHNAKQSSQTVMD--NRLTIKLVPQLPAMNVSFTPVPNRLLAGE 915

Query:   200 LRHLVLELKN 209
             +  + + L+N
Sbjct:   916 IVPVHVTLRN 925

 Score = 73 (30.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 30/113 (26%), Positives = 53/113 (46%)

Query:   256 LWYRAA-VPGKISLSITIYYEMGDVS-SVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRL 313
             LW +A    G  +L +  YY +  V+ S IKYRL+R  + L+V   L         ++  
Sbjct:  1002 LWVQAPHQAGPFTLRLLFYYSLPTVANSPIKYRLVRHIWQLQVESCLQADSTCVVSNAVT 1061

Query:   314 QQYLVRMDVVNQTSSENFQIHQLSSVG-HQWEISLLQPFDSIFPSESLFAGQA 365
              +  + ++V NQ + E  +++ ++S+  +  E  L      I  S  +  GQA
Sbjct:  1062 NELGLDVNVRNQHAVEGTEVY-INSISLYSTEFKLNPDRLHIMNSMGVSPGQA 1113


>UNIPROTKB|Q9Y2L5 [details] [associations]
            symbol:TRAPPC8 "Trafficking protein particle complex
            subunit 8" species:9606 "Homo sapiens" [GO:0005794 "Golgi
            apparatus" evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated
            transport" evidence=NAS] [GO:0005801 "cis-Golgi network"
            evidence=NAS] InterPro:IPR011990 GO:GO:0005794 Gene3D:1.25.40.10
            GO:GO:0006888 GO:GO:0005801 EMBL:AC022960 EMBL:AB023229
            EMBL:AL136749 EMBL:AC009831 EMBL:BC127109 EMBL:BC127110
            EMBL:AK001662 IPI:IPI00007253 IPI:IPI00216617 RefSeq:NP_055754.2
            UniGene:Hs.202001 ProteinModelPortal:Q9Y2L5 SMR:Q9Y2L5
            DIP:DIP-48280N IntAct:Q9Y2L5 STRING:Q9Y2L5 PhosphoSite:Q9Y2L5
            DMDM:296452850 PaxDb:Q9Y2L5 PRIDE:Q9Y2L5 DNASU:22878
            Ensembl:ENST00000283351 GeneID:22878 KEGG:hsa:22878 UCSC:uc002kxb.4
            CTD:22878 GeneCards:GC18M029409 H-InvDB:HIX0014382
            H-InvDB:HIX0039822 HGNC:HGNC:29169 HPA:HPA041107 MIM:614136
            neXtProt:NX_Q9Y2L5 PharmGKB:PA165429149 eggNOG:NOG330568
            HOGENOM:HOG000046881 HOVERGEN:HBG036226 InParanoid:Q9Y2L5
            OMA:LPGCHTG OrthoDB:EOG4RXXZB PhylomeDB:Q9Y2L5 ChiTaRS:TRAPPC8
            GenomeRNAi:22878 NextBio:43445 PMAP-CutDB:Q9Y2L5 Bgee:Q9Y2L5
            CleanEx:HS_KIAA1012 Genevestigator:Q9Y2L5
            GermOnline:ENSG00000153339 InterPro:IPR024420 PANTHER:PTHR12975
            Pfam:PF12739 Uniprot:Q9Y2L5
        Length = 1435

 Score = 93 (37.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
 Identities = 33/117 (28%), Positives = 63/117 (53%)

Query:    29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLL 88
             + V  EP+ V++ F+NPL++ + ++++SL+ +   + D    D         N+E  +L+
Sbjct:   748 LAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLV 797

Query:    89 TTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVG 145
             T+  EM     +  +SE  I+  G E+ + +L + P   G L I+GV + L G++ G
Sbjct:   798 TSEPEM---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNL-GTIQG 848

 Score = 80 (33.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
 Identities = 34/124 (27%), Positives = 54/124 (43%)

Query:   234 PQAV-FSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMH 291
             P+ +    P+ + + G +  L P+W R     G   ++   YYE       I++R+LR  
Sbjct:  1012 PEVIPVPLPDTVLLPGASVQL-PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHT 1070

Query:   292 YNLEVLPSLNVSFQISPWSS------RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGH 341
               +    SLNV   +   +S      R    LV +DV N  +SE     F I Q+SS   
Sbjct:  1071 AIICTSRSLNVRATVCRSNSLENEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSK 1130

Query:   342 QWEI 345
              W++
Sbjct:  1131 HWKL 1134

 Score = 63 (27.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
 Identities = 25/94 (26%), Positives = 38/94 (40%)

Query:   544 DVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 603
             DV V+ D++  +  P         LE    F W G +   ++L+      + +K C    
Sbjct:  1345 DVDVIVDLRHKTTSP-------EALEIHGSFTWLGQTQYKLQLKSQEIHSLQLKACFVHT 1397

Query:   604 GTYDLSNYALNWKLLTISGQGNEGETRQSSGSCP 637
             G Y+L    +  KL   S Q    ET Q + S P
Sbjct:  1398 GVYNLGTPRVFAKL---SDQVTVFETSQQN-SMP 1427


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      649       624   0.00090  120 3  11 22  0.42    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  335 KB (2169 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  55.08u 0.12s 55.20t   Elapsed:  00:00:02
  Total cpu time:  55.08u 0.12s 55.20t   Elapsed:  00:00:02
  Start:  Mon May 20 15:02:24 2013   End:  Mon May 20 15:02:26 2013

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