BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006351
(649 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens
GN=TRAPPC8 PE=1 SV=2
Length = 1435
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 153/694 (22%), Positives = 255/694 (36%), Gaps = 153/694 (22%)
Query: 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLL 88
+ V EP+ V++ F+NPL++ + ++++SL+ + + D D N+E +L+
Sbjct: 748 LAVVEEPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLV 797
Query: 89 TTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS-------- 140
T+ EM + +SE I+ G E+ + +L + P G L I+GV + L
Sbjct: 798 TSEPEM---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTV 852
Query: 141 ---GSLVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLKFIVIKSLP 182
G+L G + + +L V+ K + + VK P L I+ + +P
Sbjct: 853 DGIGALPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMP 912
Query: 183 KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKM----TNAEQSVAGGNFNKM----P 234
LE P G++R +E N S + + E GGN + P
Sbjct: 913 LLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSP 972
Query: 235 QA---------------------------------VFSFPEGISIQGETPLLWP------ 255
A S PE I + +L P
Sbjct: 973 SASENCSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL 1032
Query: 256 -LWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS-- 311
+W R G ++ YYE I++R+LR + SLNV + +S
Sbjct: 1033 PMWLRGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLE 1092
Query: 312 ----RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS-- 357
R LV +DV N +SE F I Q+SS W+ ++L + D+ S
Sbjct: 1093 NEEGRGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASRE 1152
Query: 358 ESLFAGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSPL 413
+ F +A+ C + E++T SS+ + + G++ S AD + S L
Sbjct: 1153 KGKFCFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSEL 1207
Query: 414 ADFHAH-------------ERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSH 460
AH RL+Q+ S+ D N V I DS I + Q H
Sbjct: 1208 KKPQAHLPVHTEKQSTEDAVRLIQKCSEVDLNIV--ILWKAYVVEDSKQLILEGQ----H 1261
Query: 461 HACHCSILGKTPITW--LVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSP 518
H +GK ++ + P F F N+ ++ S + + + P
Sbjct: 1262 HVI-LRTIGKEAFSYPQKQEPPEMELLKF---FRPENITVSSRPSVEQLSSLIKTSLHYP 1317
Query: 519 SSSG----QTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPF 574
S Q S P + + S DV V+ D++ + P LE F
Sbjct: 1318 ESFNHPFHQKSLCLVPVTLLLSNCSKA--DVDVIVDLRHKTTSP-------EALEIHGSF 1368
Query: 575 IWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDL 608
W G + ++L+ + +K C G Y+L
Sbjct: 1369 TWLGQTQYKLQLKSQEIHSLQLKACFVHTGVYNL 1402
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 440 SQPSKSDSDSGISDPQHLFSHHACHCSIL---GKTPITWLVDGPRTLHHNFNASFCEVNL 496
S P S + +SD HLFS ++ H S + GK+ ++L PR ++ N N
Sbjct: 159 SSPENMTSFNPMSDSSHLFSDYSKHNSTILANGKSGTSYLTSTPRRIYDNTNMINIPEET 218
Query: 497 KM--TIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 554
K T YN ++ + FD+P SSG TSP + + + D K+
Sbjct: 219 KNIPTCYNGNNHVPSESI--FDNPLSSGANRRMTSPGHKIQPSTCSDMLFTLLAKDNKIE 276
Query: 555 SQLP 558
+++P
Sbjct: 277 AEIP 280
>sp|Q2JSF1|AROA_SYNJA 3-phosphoshikimate 1-carboxyvinyltransferase OS=Synechococcus sp.
(strain JA-3-3Ab) GN=aroA PE=3 SV=1
Length = 444
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 79 LQNDEESKLLTTTG-EMNSDTSSFTLSEVDISLGGAETI------------LVQLMVTPK 125
L D ++L G E++ D ++ T++ V S +T+ LV + P+
Sbjct: 201 LSRDHSERMLRAFGAEISVDVAAKTVAVVGGSRLVGQTVQVPGDISSAAFWLVAASIVPE 260
Query: 126 VEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLE 185
E +L+ VG+ +G L + +++ +K RR+V P DL+ ++S +L
Sbjct: 261 SELLLQDVGLNPTRTGVLQVLQEMGADIQVEK----RREVAGEPLGDLR---VRS-ARLR 312
Query: 186 G----------LIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQ 235
G LI +P A A +++ ++ VK+ + + ++M
Sbjct: 313 GCSIAGDLIPTLIDEIPVLAVAAAFAEGTTVIRDAAELRVKE--SDRLAAIAQELSRMGA 370
Query: 236 AVFSFPEGISIQGETPL 252
V +P+G+ I+G PL
Sbjct: 371 QVTEYPDGLEIKGGIPL 387
>sp|Q2JLV2|AROA_SYNJB 3-phosphoshikimate 1-carboxyvinyltransferase OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=aroA PE=3 SV=2
Length = 444
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 117 LVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFI 176
LV + + P+ E +L+ VG+ +G+L + +++ + + R++ P DL+
Sbjct: 252 LVAVSIVPESELLLRDVGLNPTRTGALRVLQEMGADIQIENL----REMAGEPLGDLR-- 305
Query: 177 VIKSLPKLEG----------LIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVA 226
++S +L G LI +P A A + +++ ++ VK+ + S
Sbjct: 306 -VRS-ARLRGCTIAGDLIPTLIDEIPVLAVAAAFAEGITVIRDAAELRVKE--SDRLSAM 361
Query: 227 GGNFNKMPQAVFSFPEGISIQGETPL 252
++M V +P+G+ I+G PL
Sbjct: 362 AQELSRMGAQVAEYPDGLEIKGGIPL 387
>sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst3 PE=3 SV=1
Length = 1154
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 479 GPRTLHHNFNASFCEVNLKMTIYNSSDAAMF------VRVNTF----DSPSSSGQTSEAT 528
G LH FN FC+ NL++ + F V +N++ D S S + + T
Sbjct: 1059 GSGRLHSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNLWVDQSSQSKKQNRTT 1118
Query: 529 SPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQ 561
+ R + S GW TDIK S+ L+Q
Sbjct: 1119 NWRRWLESD--EGWRKSKANTDIKFFSETTLDQ 1149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,824,154
Number of Sequences: 539616
Number of extensions: 9428598
Number of successful extensions: 24728
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 24680
Number of HSP's gapped (non-prelim): 61
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)