Query 006351
Match_columns 649
No_of_seqs 142 out of 176
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 22:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1938 Protein with predicted 100.0 3E-37 6.5E-42 350.7 -2.7 464 6-600 468-960 (960)
2 PF08626 TRAPPC9-Trs120: Trans 99.9 5.2E-23 1.1E-27 251.7 43.2 305 22-377 639-1011(1185)
3 KOG1953 Targeting complex (TRA 99.5 3.1E-12 6.7E-17 146.6 27.1 260 25-329 684-1002(1235)
4 PF07919 Gryzun: Gryzun, putat 99.1 7E-06 1.5E-10 93.9 49.3 233 29-276 22-283 (554)
5 PF06159 DUF974: Protein of un 98.1 0.00049 1.1E-08 71.4 21.2 179 191-377 3-210 (249)
6 COG1470 Predicted membrane pro 97.2 0.019 4.1E-07 63.5 18.3 121 104-261 323-453 (513)
7 PF07705 CARDB: CARDB; InterP 96.4 0.018 3.9E-07 50.0 8.8 86 182-276 2-87 (101)
8 PF00927 Transglut_C: Transglu 96.1 0.068 1.5E-06 47.9 10.8 95 25-148 6-102 (107)
9 PF14874 PapD-like: Flagellar- 95.1 0.21 4.6E-06 44.0 9.9 87 182-277 2-91 (102)
10 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.082 1.8E-06 44.7 6.8 67 197-274 3-77 (78)
11 KOG2625 Uncharacterized conser 94.7 0.18 4E-06 50.9 9.2 308 194-617 10-332 (348)
12 PF05753 TRAP_beta: Translocon 91.4 2.1 4.5E-05 42.5 11.0 93 180-279 19-117 (181)
13 PF14646 MYCBPAP: MYCBP-associ 82.0 8.9 0.00019 43.0 10.4 81 196-277 244-328 (426)
14 PF01345 DUF11: Domain of unkn 78.8 5.2 0.00011 33.3 5.6 43 179-221 21-63 (76)
15 PF12690 BsuPI: Intracellular 78.3 4.6 0.0001 34.8 5.1 73 493-608 1-80 (82)
16 PF03896 TRAP_alpha: Transloco 77.9 41 0.00089 35.9 13.1 98 192-295 92-195 (285)
17 PF09478 CBM49: Carbohydrate b 75.5 7 0.00015 33.3 5.5 57 199-255 17-76 (80)
18 COG1361 S-layer domain [Cell e 75.1 62 0.0013 36.9 14.7 128 189-327 157-295 (500)
19 PF12735 Trs65: TRAPP traffick 75.0 19 0.00042 38.6 9.9 130 472-613 157-287 (306)
20 PF14874 PapD-like: Flagellar- 73.9 14 0.00031 32.3 7.3 31 484-514 10-42 (102)
21 PF14796 AP3B1_C: Clathrin-ada 71.3 14 0.0003 35.5 6.9 58 194-258 80-138 (145)
22 PF00927 Transglut_C: Transglu 71.1 7.2 0.00016 34.7 4.8 71 191-265 7-81 (107)
23 PF07705 CARDB: CARDB; InterP 69.9 68 0.0015 27.2 10.6 69 26-133 11-80 (101)
24 PF10633 NPCBM_assoc: NPCBM-as 68.7 24 0.00052 29.5 7.2 25 585-609 45-72 (78)
25 PF00635 Motile_Sperm: MSP (Ma 68.5 12 0.00026 33.0 5.6 68 198-277 17-89 (109)
26 PF13584 BatD: Oxygen toleranc 66.8 1.1E+02 0.0023 34.8 14.2 88 114-214 71-158 (484)
27 PF12584 TRAPPC10: Trafficking 65.5 34 0.00074 32.5 8.4 35 107-141 80-114 (147)
28 PF06030 DUF916: Bacterial pro 61.9 33 0.00071 31.8 7.3 71 192-262 20-105 (121)
29 PF12690 BsuPI: Intracellular 61.5 55 0.0012 28.2 8.1 71 36-133 2-81 (82)
30 PF04442 CtaG_Cox11: Cytochrom 61.1 25 0.00054 34.0 6.5 80 174-259 43-126 (152)
31 TIGR01451 B_ant_repeat conserv 60.6 12 0.00027 29.4 3.7 29 193-221 6-34 (53)
32 PRK05089 cytochrome C oxidase 58.8 23 0.0005 35.4 6.0 59 194-260 89-154 (188)
33 smart00809 Alpha_adaptinC2 Ada 57.4 90 0.002 27.2 9.2 71 198-277 17-90 (104)
34 PF12742 Gryzun-like: Gryzun, 56.7 28 0.00061 28.1 5.0 42 569-610 13-54 (57)
35 PF05506 DUF756: Domain of unk 56.0 52 0.0011 28.4 7.1 20 495-514 21-40 (89)
36 KOG3865 Arrestin [Signal trans 55.5 61 0.0013 34.9 8.7 144 107-260 114-276 (402)
37 PF13584 BatD: Oxygen toleranc 55.1 3.6E+02 0.0077 30.5 19.4 174 108-300 187-385 (484)
38 PTZ00128 cytochrome c oxidase 53.4 28 0.0006 36.0 5.7 72 177-259 117-197 (232)
39 KOG4386 Uncharacterized conser 52.4 60 0.0013 37.3 8.4 88 469-617 690-777 (809)
40 PF06030 DUF916: Bacterial pro 51.2 58 0.0013 30.2 7.0 78 493-602 28-105 (121)
41 smart00769 WHy Water Stress an 48.7 62 0.0013 28.5 6.6 28 34-61 15-42 (100)
42 COG3175 COX11 Cytochrome oxida 47.9 74 0.0016 31.7 7.4 57 195-259 89-152 (195)
43 PF11614 FixG_C: IG-like fold 44.5 1.2E+02 0.0025 27.4 7.9 70 195-274 26-102 (118)
44 PRK13202 ureB urease subunit b 43.1 47 0.001 30.0 4.8 66 192-258 12-84 (104)
45 PF02883 Alpha_adaptinC2: Adap 41.6 2.1E+02 0.0045 25.5 9.1 73 197-278 22-102 (115)
46 PF13473 Cupredoxin_1: Cupredo 40.4 90 0.0019 27.5 6.4 27 582-610 66-92 (104)
47 PF13598 DUF4139: Domain of un 39.4 2E+02 0.0044 30.4 10.1 80 487-603 236-316 (317)
48 PF03168 LEA_2: Late embryogen 39.1 1.9E+02 0.0041 24.5 8.1 52 39-123 1-52 (101)
49 COG1470 Predicted membrane pro 38.6 6.6E+02 0.014 28.9 19.9 51 104-155 35-89 (513)
50 PF06159 DUF974: Protein of un 38.2 4.8E+02 0.01 27.1 22.9 188 27-261 7-208 (249)
51 PF05753 TRAP_beta: Translocon 38.2 2.4E+02 0.0053 28.0 9.6 93 16-140 20-113 (181)
52 PF00630 Filamin: Filamin/ABP2 37.5 1.7E+02 0.0036 25.1 7.6 32 30-61 17-48 (101)
53 PF04744 Monooxygenase_B: Mono 36.1 65 0.0014 35.5 5.5 28 106-133 79-106 (381)
54 TIGR03769 P_ac_wall_RPT actino 34.6 31 0.00068 25.9 2.0 21 596-617 5-25 (41)
55 KOG0439 VAMP-associated protei 33.1 1.4E+02 0.0031 29.9 7.3 68 199-278 25-98 (218)
56 PF11614 FixG_C: IG-like fold 32.9 1.7E+02 0.0038 26.3 7.2 59 491-604 30-88 (118)
57 PF07760 DUF1616: Protein of u 31.5 3.9E+02 0.0085 28.3 10.6 104 187-293 179-286 (287)
58 PF04425 Bul1_N: Bul1 N termin 31.5 2.2E+02 0.0048 32.3 8.9 95 168-262 131-272 (438)
59 COG1572 Uncharacterized conser 29.5 1E+03 0.022 28.3 15.3 189 105-326 341-542 (606)
60 KOG3620 Uncharacterized conser 29.1 2.9E+02 0.0063 35.1 9.7 101 23-128 689-800 (1626)
61 PF06280 DUF1034: Fn3-like dom 27.9 93 0.002 27.8 4.4 27 576-602 56-82 (112)
62 PF15146 FANCAA: Fanconi anemi 26.6 1.5E+02 0.0033 33.1 6.4 95 170-276 56-159 (435)
63 PRK15295 fimbrial assembly cha 26.5 7.1E+02 0.015 25.5 12.0 80 195-278 29-111 (226)
64 TIGR00192 urease_beta urease, 26.0 1.4E+02 0.003 27.0 4.9 64 194-259 14-84 (101)
65 PF06280 DUF1034: Fn3-like dom 25.7 1.2E+02 0.0027 27.1 4.8 23 104-126 60-82 (112)
66 cd00407 Urease_beta Urease bet 25.0 1.4E+02 0.003 27.0 4.7 63 194-258 14-83 (101)
67 PF03173 CHB_HEX: Putative car 23.8 1.9E+02 0.0042 28.3 6.0 64 198-261 29-105 (164)
68 TIGR03079 CH4_NH3mon_ox_B meth 23.6 1.5E+02 0.0033 32.6 5.6 64 196-261 279-355 (399)
69 PF11906 DUF3426: Protein of u 22.6 4.8E+02 0.01 24.4 8.4 72 197-271 66-147 (149)
70 PF02752 Arrestin_C: Arrestin 22.6 4E+02 0.0086 23.6 7.6 31 191-221 11-42 (136)
71 PF07070 Spo0M: SpoOM protein; 22.6 3.3E+02 0.0072 27.9 7.7 69 193-261 22-97 (218)
72 PF00635 Motile_Sperm: MSP (Ma 22.3 5.1E+02 0.011 22.4 8.4 23 494-516 20-42 (109)
73 PF09624 DUF2393: Protein of u 22.2 3.9E+02 0.0084 25.2 7.7 74 195-268 58-142 (149)
74 PRK15249 fimbrial chaperone pr 21.3 7.8E+02 0.017 25.7 10.3 83 192-278 34-125 (253)
75 PF06355 Aegerolysin: Aegeroly 21.2 3.6E+02 0.0079 25.4 7.1 68 37-133 3-76 (131)
76 PF14310 Fn3-like: Fibronectin 21.1 90 0.002 25.7 2.7 27 106-132 25-51 (71)
77 KOG0427 Ubiquitin conjugating 20.8 1.6E+02 0.0034 27.8 4.4 41 168-208 30-70 (161)
78 PF08626 TRAPPC9-Trs120: Trans 20.1 2E+02 0.0043 36.8 6.7 65 574-648 857-921 (1185)
No 1
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-37 Score=350.68 Aligned_cols=464 Identities=20% Similarity=0.216 Sum_probs=320.3
Q ss_pred cccccccccccchhhh-ccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCccccccccc
Q 006351 6 STARSNWLELQSKLIM-KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEE 84 (649)
Q Consensus 6 ~~~~~~wl~~~~~~~~-~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~ 84 (649)
.+|..+|...+-..-+ ....+.+++|+||++++.|+++|||++++.+++++|+|+|..++....+|++.. ..
T Consensus 468 ~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~~~Na~s~-~~------ 540 (960)
T KOG1938|consen 468 FAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSGSSNAYSH-SQ------ 540 (960)
T ss_pred hcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhccccccccccccccc-cc------
Confidence 3455556666555433 344479999999999999999999999999999999999998544333443321 10
Q ss_pred ccccccccccCCCCCceeeeeeeEEECCCceEEEEEEEEecceEEEEEEEEEEEE------cceeeeeEeeeeccccccc
Q 006351 85 SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNFESNLVKKKI 158 (649)
Q Consensus 85 ~~~p~~~~~~~~~~~~f~~~~~~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l------~~~v~g~~~fe~~g~RL~~ 158 (649)
..|+.+ .. ....++.+.+.|.+++.|+.+|+..|.|+|.|..|+. .+.+.|...|+++|+|++.
T Consensus 541 -~~Pe~~--------~~-s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~ 610 (960)
T KOG1938|consen 541 -SSPELI--------DD-SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNN 610 (960)
T ss_pred -cChhhh--------hh-hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhh
Confidence 111100 00 1236889999999999999999999999999999999 5689999999999999999
Q ss_pred ccccc-cccCCCCCceEEEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe--eeeeecC-------
Q 006351 159 AKGRR-KVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQSVAGG------- 228 (649)
Q Consensus 159 tk~r~-~~~~~pd~rL~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P~~~~g------- 228 (649)
++.++ ..+|.+|.||.+.+.+.+|+|+++|+++|+.+||||+|++.|+++|.|.+|+.+|+++ +|.+...
T Consensus 611 ~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n~s~~~ 690 (960)
T KOG1938|consen 611 TKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYFAVLENESHRK 690 (960)
T ss_pred hcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhcccccccc
Confidence 99754 8899999999999999999999999999999999999999999999999999999999 7722211
Q ss_pred ---C-CCCCCCeee------ecCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEEecCCCCccceEEEEEEEEEEEEee
Q 006351 229 ---N-FNKMPQAVF------SFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLP 298 (649)
Q Consensus 229 ---~-~~~~~~~vf------~lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~p 298 (649)
+ .++..+..+ .++.+..|.+|+++++++|+|++..+. =++ +|
T Consensus 691 ~~~~~a~i~~~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~~w-----------~r------------ 742 (960)
T KOG1938|consen 691 GKMNAANISQQETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----KPW-----------LR------------ 742 (960)
T ss_pred cccCHhhhhhhhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----cch-----------HH------------
Confidence 1 122223333 345678999999999999999995540 111 11
Q ss_pred eeeEEEEEeecccccceEEEEEEEEeCCCCccEEEEEEEeeeeceEEEeeCCCcccCCCcccCccceeeEEEEEeecCCC
Q 006351 299 SLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGES 378 (649)
Q Consensus 299 SL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~si~~~~~l~p~q~~~~~f~~~~~~~~ 378 (649)
+++++. .+...|.....-..+++++.....|.....+.-.+..++.....++.++++++...+++.
T Consensus 743 -------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~~~~~~~ls~~~~~~~~~~~ 808 (960)
T KOG1938|consen 743 -------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAFTPSGKNLSRTSVSFIGRAV 808 (960)
T ss_pred -------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCccccCccccccceeeeccccccc
Confidence 001111 233334333445777777777777888877766666667667789999999999888887
Q ss_pred CCCCCCCCCCcceeeceeeecCCCccccccCCCcchhhhhhhhhcccc--ccCCCCcceEEEEeccCccCCCCCCCCCce
Q 006351 379 STSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRV--SQDDTNTVDFIFISQPSKSDSDSGISDPQH 456 (649)
Q Consensus 379 ~~~~~~~~s~~~~~~sdv~l~~~~~~~~~~s~~P~~df~~~~r~~~~~--~~~~~~~ldliv~W~a~~~~~~~~~~~~~~ 456 (649)
+..++. -++.. ++..+..|+++||......-.. .......=+|+++|+|++++|.. +. ..
T Consensus 809 ~~e~e~------~i~~~---------~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~~i~~~w~a~vv~~eg--~~-~~ 870 (960)
T KOG1938|consen 809 EIESEQ------PIVAR---------LVPLSQGETIKFFWLTSTTEVTPPAEIQSTMDTIVILWKANVVNDEG--VT-RF 870 (960)
T ss_pred cccccC------Ccccc---------eeeccCCcchhhhhhccccccCCChhhccChhhHHHhcccccccccc--ee-ee
Confidence 754443 12222 4445566777777652211000 11111123489999999998863 11 23
Q ss_pred eeecccccccccCCCceEEEEeCCCeEeccCCCCceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCC
Q 006351 457 LFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPS 536 (649)
Q Consensus 457 ~Gqhh~~~~~~~~~~pI~~~l~~p~~i~HdF~~~~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 536 (649)
+| ++-.+.|+|..+.|.+..++.+.|.+...-. +.+.-+..+ .+....
T Consensus 871 ~g--------------------~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~----t~~~~~~~p--------~t~~~~ 918 (960)
T KOG1938|consen 871 IG--------------------PFVKLKKLFKTDSCLSSLRISCETTSKEISH----TADHLCELP--------ITLLIS 918 (960)
T ss_pred cC--------------------CcceehhhccCCcccccchhhhhhhhhhcch----hhhhhhccc--------chhhhc
Confidence 33 4555666666666666666666666642111 222111111 122344
Q ss_pred CCCCCcccccccccceecccCCCcccccCCcccccCceEEecccceeEEeCCCceEEEEeEEEE
Q 006351 537 GNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCL 600 (649)
Q Consensus 537 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~ 600 (649)
+|+.||.+|+....- . .|+|+..||+|++++|.+.++|+|||
T Consensus 919 n~~~~~~~v~~~~~~--------------------~--~w~~~~~~k~q~~~~~~~~~~m~~~~ 960 (960)
T KOG1938|consen 919 NNDLAWRPVSVSIEE--------------------S--SWIGRPVYKQQIGILEEASLEMKWKI 960 (960)
T ss_pred CCcccccccchhhhh--------------------h--cccCCcceeeeecccccceeeeEecC
Confidence 566677666542110 0 29999999999999999999999986
No 2
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=99.93 E-value=5.2e-23 Score=251.66 Aligned_cols=305 Identities=22% Similarity=0.212 Sum_probs=212.1
Q ss_pred ccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCce
Q 006351 22 KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSF 101 (649)
Q Consensus 22 ~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f 101 (649)
...+...++|+||+++|.|+|+||++++|.|++|+|.++...-
T Consensus 639 ~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~f------------------------------------- 681 (1185)
T PF08626_consen 639 SSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVPF------------------------------------- 681 (1185)
T ss_pred cccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCcc-------------------------------------
Confidence 3456789999999999999999999999999999999862211
Q ss_pred eeeeeeEEE-CCCceEEEEEEEEecceEEEEEEEEEEEEcceeeeeEeeeec-------cccccccccc--ccccC----
Q 006351 102 TLSEVDISL-GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESN-------LVKKKIAKGR--RKVKS---- 167 (649)
Q Consensus 102 ~~~~~~i~L-~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~~~v~g~~~fe~~-------g~RL~~tk~r--~~~~~---- 167 (649)
.....++.| +|.+++.|+|.++|+++|.|+|+|+.+++.|... +..+... ++.++....+ ...+.
T Consensus 682 es~~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l 760 (1185)
T PF08626_consen 682 ESYPVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCRE-EFFPIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPL 760 (1185)
T ss_pred ccceeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEccccc-ceecccCcccchhhhhhcccccccccccccccccc
Confidence 111246666 9999999999999999999999999999998533 2222222 2222211111 11111
Q ss_pred ----CCCCceEEEEecCCCeEEEEEccCC---cceecceEEEEEEEEEecccccccceEEe-ee-----eeec-CCCCCC
Q 006351 168 ----SPSNDLKFIVIKSLPKLEGLIHPLP---ERAYAGDLRHLVLELKNQSDFSVKKMTNA-EQ-----SVAG-GNFNKM 233 (649)
Q Consensus 168 ----~pd~rL~~~V~~~~P~L~v~~~~lP---~~ll~GEi~~~~l~L~N~g~~pv~~l~v~-~P-----~~~~-g~~~~~ 233 (649)
..+..|+++|+|++|+|++.+.+++ ..||+||.++++|+|+|.|.+|++.|.+. .. +... .+++..
T Consensus 761 ~~~~~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~ 840 (1185)
T PF08626_consen 761 ESESPKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLS 840 (1185)
T ss_pred cccccccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCC
Confidence 1346799999999999999998555 46999999999999999999999999999 31 1111 111111
Q ss_pred CCee------------eecCCCcccCCCCeEEEEEEEEecC--CCceEEEEEEEEecC-CCCccceEEEEEEEEEEEEee
Q 006351 234 PQAV------------FSFPEGISIQGETPLLWPLWYRAAV--PGKISLSITIYYEMG-DVSSVIKYRLLRMHYNLEVLP 298 (649)
Q Consensus 234 ~~~v------------f~lp~~~~L~pGes~~iplwlra~~--~G~~~l~lLfyYe~~-~~~~~~~~R~~R~~~~i~V~p 298 (649)
...+ +.+.....|+||++.++++.+.|.. -+-+...+.+.|... +.......|-++.-..++|.|
T Consensus 841 ~~e~yelE~~l~~~~~~~i~~~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~ 920 (1185)
T PF08626_consen 841 PDELYELEWQLFKLPAFRILNKPPIPPGESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNP 920 (1185)
T ss_pred hhhhhhhhhhhhcCcceeecccCccCCCCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEec
Confidence 1112 3332223899999999999998862 246677888888754 223456679999999999999
Q ss_pred eeeEEE-EEeecc------------------------cccceEEEEEEEEeCCCCccEEEEEEEeeeeceEEEeeCCCcc
Q 006351 299 SLNVSF-QISPWS------------------------SRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDS 353 (649)
Q Consensus 299 SL~vs~-~~~~s~------------------------s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~s 353 (649)
|+.+.- -+.|-. ....-.+|-+||.|.... .+.+ ++.. . .+.
T Consensus 921 slev~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNsw~~-~~~v-~l~~-------~----~~~ 987 (1185)
T PF08626_consen 921 SLEVTRCDILPLNSDSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNSWPN-PLSV-NLHY-------D----EDF 987 (1185)
T ss_pred eEEEeeeeEEecccccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEecCCC-ceEE-EEEe-------c----cCc
Confidence 999987 344441 112346788999998765 2332 1111 0 011
Q ss_pred cCCCcccCccceeeEEEEEeecCC
Q 006351 354 IFPSESLFAGQALSCFFMLKNRGE 377 (649)
Q Consensus 354 i~~~~~l~p~q~~~~~f~~~~~~~ 377 (649)
......+.|+++.+..+-++|+.-
T Consensus 988 ~~~~~~I~pg~t~Ri~vPi~Ri~l 1011 (1185)
T PF08626_consen 988 SSSEITIEPGHTSRIIVPIKRIYL 1011 (1185)
T ss_pred cccceEECCCCeEEEEEEeccccc
Confidence 111226889999999998888753
No 3
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.1e-12 Score=146.63 Aligned_cols=260 Identities=18% Similarity=0.156 Sum_probs=177.5
Q ss_pred cccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 006351 25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (649)
Q Consensus 25 ~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 104 (649)
++.-++|||||++|.|+++||+.+++.+.||+|..+ ++.|...
T Consensus 684 ~~~LvwVvdepvef~v~v~Np~~fdl~V~Di~L~~e-------------------------------------gvnF~~~ 726 (1235)
T KOG1953|consen 684 QSKLVWVVDEPVEFSVYVRNPLSFDLEVQDIHLETE-------------------------------------GVNFKCS 726 (1235)
T ss_pred cceEEEEeCCceEEEEEEcCccceeEEEeeEEEEec-------------------------------------cccceee
Confidence 336799999999999999999999999999999853 1233334
Q ss_pred eeeEEECCCce-EEEEEEEEecceEEEEEEEEEEEEcceeeeeEeeeecccc-ccccc--c--cccccCCCCCceEEEEe
Q 006351 105 EVDISLGGAET-ILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK-KKIAK--G--RRKVKSSPSNDLKFIVI 178 (649)
Q Consensus 105 ~~~i~L~p~et-k~v~L~v~P~~~G~L~I~Gv~~~l~~~v~g~~~fe~~g~R-L~~tk--~--r~~~~~~pd~rL~~~V~ 178 (649)
..++++.|... ++|||.++|++.|-|.|+|++.+..|...--|.|...|-. -+.-. + |-...|.+ +.+.+.
T Consensus 727 ~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vyl~---~~i~il 803 (1235)
T KOG1953|consen 727 HVSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVYLR---SLITIL 803 (1235)
T ss_pred eeeeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccchhheeecc---cccccC
Confidence 57999999987 9999999999999999999999999965544556555532 11111 1 22234443 456888
Q ss_pred cCCCeEEEEEc----cCCcceecceEEEEEEEEEecccccccceEEe--ee-------eeecCCCC--------------
Q 006351 179 KSLPKLEGLIH----PLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-------SVAGGNFN-------------- 231 (649)
Q Consensus 179 ~~~P~L~v~~~----~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-------~~~~g~~~-------------- 231 (649)
|.+|.+...-+ .+.--+|+||...+.|+++|.|.+|+.-..+. .+ .+++.+.+
T Consensus 804 P~~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i~q~~~p~~~~~~~e~~s~~~e~~~l~~~ 883 (1235)
T KOG1953|consen 804 PLWPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSSGPINFAEVETGELIYQMLIPNTSFVEAEHISVLFEDSSLKAF 883 (1235)
T ss_pred CCcccchhhhcccCCCccEEEEcCCcceEEEEEEecCccceEEEEEeeccchhhcCCCceeecCchhhHhhccCccchhH
Confidence 99996655432 23345999999999999999999999988887 32 22222110
Q ss_pred ---------CCCC---------------eeeecCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEEecCCCCccce--E
Q 006351 232 ---------KMPQ---------------AVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIK--Y 285 (649)
Q Consensus 232 ---------~~~~---------------~vf~lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyYe~~~~~~~~~--~ 285 (649)
+.+. .+++++ ..+.+++..++-+-+||+.. ..-|+..|.++-+...+. -
T Consensus 884 l~ai~~~P~is~n~~~el~~~et~vP~fT~~sll--ip~s~s~~de~~Ipl~~~l~---~~efilrrs~eip~~D~e~fe 958 (1235)
T KOG1953|consen 884 LQAIADKPVISANRLYELQFEETNVPTFTVESLL--IPLSPSERDEIHIPLRAPLS---QEEFILRRSVEIPEDDIEFFE 958 (1235)
T ss_pred HHHHHhCCCCCcchhhhhhhhccCCCCccccccc--CCCCCCCCceEEEEeecccC---cceeEEEeeecCcccchHHHH
Confidence 0000 122232 47889999999999999732 234555565554443322 3
Q ss_pred EEEEEEEEEEEeeeeeEEEEEeecccccceEEEEEEEEeCCCCc
Q 006351 286 RLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSE 329 (649)
Q Consensus 286 R~~R~~~~i~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~ 329 (649)
|-+|.-.-|.+.|+.++++.-.-..-..-..+|.+++.|....+
T Consensus 959 r~~~~p~~i~i~p~v~~~aws~lp~ddpf~~lv~v~~~ns~~~d 1002 (1235)
T KOG1953|consen 959 RRLRIPVSINISPRVDLKAWSALPEDDPFYCLVLVNFYNSFSED 1002 (1235)
T ss_pred HhhcCcceEEecccccchhcccCCCCCceEEEEEEecccccCCc
Confidence 88888899999999988886321111123455666666665443
No 4
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.14 E-value=7e-06 Score=93.86 Aligned_cols=233 Identities=17% Similarity=0.222 Sum_probs=148.6
Q ss_pred eEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccc-cCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 006351 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEME-SDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (649)
Q Consensus 29 ~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~-s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 107 (649)
-..+||++.+.|.+++....||.+++|++..+ ....... .++. .......+ ..+.........+
T Consensus 22 ~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs--~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~ 86 (554)
T PF07919_consen 22 EGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFS--GSLYPIVISHSD-------ADASSADS------STSSGSPLSGSAD 86 (554)
T ss_pred CccCCCeEEEEEEEEcCCCCCEEeeEEEEEee--CCCCCceEeccc-------cccccccC------cccccccccCccc
Confidence 56799999999999999999999999999854 3322221 0000 00000000 0000111123469
Q ss_pred EEECCCceEEEEEEEEecc---eEEEEEEEEEEEEcc-eeeeeEeeeeccc------cccccc-c-cccccCCCCCceEE
Q 006351 108 ISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSG-SLVGVYNFESNLV------KKKIAK-G-RRKVKSSPSNDLKF 175 (649)
Q Consensus 108 i~L~p~etk~v~L~v~P~~---~G~L~I~Gv~~~l~~-~v~g~~~fe~~g~------RL~~tk-~-r~~~~~~pd~rL~~ 175 (649)
+.|.|+++|...+.+.|++ .|.++|.+|...+.. .+.....+..... ...... . ++...+.+-..-.+
T Consensus 87 L~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 166 (554)
T PF07919_consen 87 LTLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSI 166 (554)
T ss_pred eEEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEE
Confidence 9999999999999999999 999999999999982 1111111111100 000000 0 00111111144568
Q ss_pred EEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe--e-e-eeec-C--CC---------CCCCCeeee
Q 006351 176 IVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--E-Q-SVAG-G--NF---------NKMPQAVFS 239 (649)
Q Consensus 176 ~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~-P-~~~~-g--~~---------~~~~~~vf~ 239 (649)
.|.+.=|.|++.+...-...|.||...+.++|.|......+..... . + .... + +. .+.....+.
T Consensus 167 ~I~p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (554)
T PF07919_consen 167 RILPRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFL 246 (554)
T ss_pred EEECCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhcc
Confidence 8999999999999666678999999999999999998887754433 2 4 2211 1 10 011111111
Q ss_pred cCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEEec
Q 006351 240 FPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 276 (649)
Q Consensus 240 lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyYe~ 276 (649)
.-.-..|++|++.+.++.++...+|...|.+=++|..
T Consensus 247 ~~~lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l 283 (554)
T PF07919_consen 247 GIPLGELAPGSSITVTLYIRTSRPGEYELSISVSYHL 283 (554)
T ss_pred CcccccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEE
Confidence 1112489999999999999977999999999999975
No 5
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=98.09 E-value=0.00049 Score=71.44 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=127.0
Q ss_pred CCc---ceecceEEEEEEEEEecccccccceEEe----ee-e---eecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEE
Q 006351 191 LPE---RAYAGDLRHLVLELKNQSDFSVKKMTNA----EQ-S---VAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYR 259 (649)
Q Consensus 191 lP~---~ll~GEi~~~~l~L~N~g~~pv~~l~v~----~P-~---~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlr 259 (649)
||. .+|.||...+.|.+.|.+..+++++.+. .| - +.+.+.... .. ....|.||++.+.-+-..
T Consensus 3 LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~-~~-----~~~~L~p~~~l~~iv~~~ 76 (249)
T PF06159_consen 3 LPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENS-DS-----PVASLAPGESLDFIVSHE 76 (249)
T ss_pred CCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccc-cc-----cccccCCCCeEeEEEEEE
Confidence 565 4999999999999999999999999998 22 1 111111100 00 024699999977766655
Q ss_pred ecCCCceEEEEEEEEecCCCCccceEEEEEEEEEEEEeeeeeEEEEEeecccc-----cceEEEEEEEEeCCCCccEEEE
Q 006351 260 AAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR-----LQQYLVRMDVVNQTSSENFQIH 334 (649)
Q Consensus 260 a~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s~s~-----~~~~~l~v~V~N~~~~~~~~l~ 334 (649)
=.+.|.|.|...+.|......+ -.-|..|-.+.|.|.+.|.|+..+...... ...+.|.+.|+|.+. ..+.|.
T Consensus 77 lkE~G~h~L~c~VsY~~~~~~~-g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~-~pl~Le 154 (249)
T PF06159_consen 77 LKELGNHTLVCTVSYTDPTETS-GERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISS-GPLFLE 154 (249)
T ss_pred eeecCceEEEEEEEEecCcccC-CccceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEEEEEEEEecCC-CceEEE
Confidence 5699999999998665552111 236889999999999999999987766553 347999999999994 478888
Q ss_pred EEEee-eeceEEEeeCCCcc------cC------CCcccCccceeeEEEEEeecCC
Q 006351 335 QLSSV-GHQWEISLLQPFDS------IF------PSESLFAGQALSCFFMLKNRGE 377 (649)
Q Consensus 335 Qvs~v-S~~W~l~~l~~~~s------i~------~~~~l~p~q~~~~~f~~~~~~~ 377 (649)
.|..- ++.|+...+..... .. ....|.|++.-...|++.+...
T Consensus 155 ~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 155 KVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred EEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 88876 56788877642111 00 1124778888877788888775
No 6
>COG1470 Predicted membrane protein [Function unknown]
Probab=97.23 E-value=0.019 Score=63.47 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=78.8
Q ss_pred eeeeEEECCCceEEEEEEEEecc---eEEEEEEEEEEEEcceeeeeEeeeecccccccccccccccCCCCCceEEEEecC
Q 006351 104 SEVDISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS 180 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~---~G~L~I~Gv~~~l~~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL~~~V~~~ 180 (649)
...++-|.|+|++.+.|.++|-. +|...+.=..-.=++ +. --.-|++.++..
T Consensus 323 ~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~s~-v~------------------------~e~~lki~~~g~ 377 (513)
T COG1470 323 RVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASSSSG-VT------------------------RELPLKIKNTGS 377 (513)
T ss_pred EEEEEEecCCCceEEEEEEecCCCCCCCceeEEEEEecccc-ce------------------------eeeeEEEEeccc
Confidence 34689999999999999999986 465544311100000 01 011133333333
Q ss_pred CCeEEEEEccCC--cceecceEEEEEEEEEecccccccceEEe--ee--e-eecCCCCCCCCeeeecCCCcccCCCCeEE
Q 006351 181 LPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ--S-VAGGNFNKMPQAVFSFPEGISIQGETPLL 253 (649)
Q Consensus 181 ~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P--~-~~~g~~~~~~~~vf~lp~~~~L~pGes~~ 253 (649)
+-.+ +.+..-| ..+-.||-+.+.+.+.|.|.+||+||.+. .| | +.+... . . ..|+||++.+
T Consensus 378 ~~~~-v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~------~--I---~sL~pge~~t 445 (513)
T COG1470 378 YNEL-VKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDES------T--I---PSLEPGESKT 445 (513)
T ss_pred ccee-EEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcc------c--c---cccCCCCcce
Confidence 3222 3333323 24789999999999999999999999999 56 3 222211 1 1 2799999999
Q ss_pred EEEEEEec
Q 006351 254 WPLWYRAA 261 (649)
Q Consensus 254 iplwlra~ 261 (649)
+++.+|+|
T Consensus 446 V~ltI~vP 453 (513)
T COG1470 446 VSLTITVP 453 (513)
T ss_pred EEEEEEcC
Confidence 99999999
No 7
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.44 E-value=0.018 Score=49.99 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=59.0
Q ss_pred CeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 182 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 182 P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
|-|.+.....|..+..|+..++.+.++|.|...+.++.+. +..++... ..... ..|+||++.++.+-+..+
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~---~~~~~~~~---~~~~i---~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVR---LYLDGNSV---STVTI---PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEE---EEETTEEE---EEEEE---SEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEE---EEECCcee---ccEEE---CCcCCCcEEEEEEEEEeC
Confidence 5677767778899999999999999999999999998887 22221111 11111 379999999999999999
Q ss_pred CCCceEEEEEEEEec
Q 006351 262 VPGKISLSITIYYEM 276 (649)
Q Consensus 262 ~~G~~~l~lLfyYe~ 276 (649)
.+|.+.+.+.+-+..
T Consensus 73 ~~G~~~i~~~iD~~n 87 (101)
T PF07705_consen 73 SPGSYTIRVVIDPDN 87 (101)
T ss_dssp S-CEEEEEEEESTTT
T ss_pred CCCeEEEEEEEeeCC
Confidence 999999888875543
No 8
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=96.10 E-value=0.068 Score=47.88 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=56.0
Q ss_pred cccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 006351 25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (649)
Q Consensus 25 ~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 104 (649)
+-....++|+++.|.+.|+||+..+|.==++.|.+.--.-+|-.. ..+...
T Consensus 6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~-----------------------------~~~~~~ 56 (107)
T PF00927_consen 6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTR-----------------------------DQFKKE 56 (107)
T ss_dssp EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEE-----------------------------EEEEEE
T ss_pred EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCccc-----------------------------ccEeEE
Confidence 334556799999999999999998765434444321111101000 012344
Q ss_pred eeeEEECCCceEEEEEEEEecceEEEEEEEEEEEEc--ceeeeeEe
Q 006351 105 EVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS--GSLVGVYN 148 (649)
Q Consensus 105 ~~~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~--~~v~g~~~ 148 (649)
...+.|+|++++.+.+.++|.+.|.-++..-.+++. +.+.|...
T Consensus 57 ~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~~~~~~~~l~~V~g~~~ 102 (107)
T PF00927_consen 57 KFEVTLKPGETKSVEVTITPSQYGPKQLLVDLFSSDALADVKGTKQ 102 (107)
T ss_dssp EEEEEE-TTEEEEEEEEE-HHSHEEECCEEEEEEESSEEEEEEEEE
T ss_pred EcceeeCCCCEEEEEEEEEceeEecchhcchhcchhhhcCeeccEE
Confidence 579999999999999999999999844432133333 44555443
No 9
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.05 E-value=0.21 Score=44.00 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=60.1
Q ss_pred CeEEEEEccCCc-ceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEEEEE
Q 006351 182 PKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPLWYR 259 (649)
Q Consensus 182 P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~iplwlr 259 (649)
|.|++.-..+.- .+..|+.....|+|+|.|..|++ .++..| + .....|. -|....|+||++.++.+.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~-f~v~~~-------~-~~~~~~~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPAR-FRVRQP-------E-SLSSFFSVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEE-EEEEeC-------C-cCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence 566665443332 47899999999999999999854 333311 0 0011222 12346899999999999999
Q ss_pred ec-CCCceEEEEEEEEecC
Q 006351 260 AA-VPGKISLSITIYYEMG 277 (649)
Q Consensus 260 a~-~~G~~~l~lLfyYe~~ 277 (649)
++ ..|..+-.+.+..+..
T Consensus 73 ~~~~~g~~~~~l~i~~e~~ 91 (102)
T PF14874_consen 73 PTKPLGDYEGSLVITTEGG 91 (102)
T ss_pred eCCCCceEEEEEEEEECCe
Confidence 65 7899998888877654
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.02 E-value=0.082 Score=44.72 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=44.6
Q ss_pred cceEEEEEEEEEecccccccceEEe--ee--ee-ecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec---CCCceEE
Q 006351 197 AGDLRHLVLELKNQSDFSVKKMTNA--EQ--SV-AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA---VPGKISL 268 (649)
Q Consensus 197 ~GEi~~~~l~L~N~g~~pv~~l~v~--~P--~~-~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~---~~G~~~l 268 (649)
.||...+.++++|.|..++.++.+. .| |- ..+ .-.. ..|+||++.++.+.|+.| .+|.+.|
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~--------~~~~---~~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS--------PASV---PSLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E--------EEEE-----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC--------cccc---ccCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 6999999999999999999999998 55 43 111 1112 279999999999999987 4699999
Q ss_pred EEEEEE
Q 006351 269 SITIYY 274 (649)
Q Consensus 269 ~lLfyY 274 (649)
.+...|
T Consensus 72 ~~~a~y 77 (78)
T PF10633_consen 72 TVTARY 77 (78)
T ss_dssp EEEEE-
T ss_pred EEEEEe
Confidence 988877
No 11
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.18 Score=50.86 Aligned_cols=308 Identities=15% Similarity=0.229 Sum_probs=169.4
Q ss_pred ceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecC----CCcccCCCCeEEEEEEEE-ec-CCCceE
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFP----EGISIQGETPLLWPLWYR-AA-VPGKIS 267 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp----~~~~L~pGes~~iplwlr-a~-~~G~~~ 267 (649)
.+|-||...+++.+.|-+...++++-++.. +. ..++++ .+| ....|+|.--. -=.++ -- +-|.|-
T Consensus 10 niflgetfs~yinv~nds~k~v~~i~lk~d---lq---tssqrl-~l~~s~~~~aei~~~~c~--~~vi~hevkeig~hi 80 (348)
T KOG2625|consen 10 NIFLGETFSFYINVHNDSEKTVKDILLKAD---LQ---TSSQRL-NLPASNAAAAEIEPDCCE--DDVIHHEVKEIGQHI 80 (348)
T ss_pred ceeeccceEEEEEEecchhhhhhhheeeec---cc---ccceee-ccccchhhhhhcCccccc--hhhhhHHHHhhccEE
Confidence 489999999999999999999999999800 00 001111 111 01122221110 00011 11 458888
Q ss_pred EEEEEEEecCCCCccceEEEEEEEEEEEEeeeeeEEEEEeeccccc----ceEEEEEEEEeCCCCccEEEEEEEee-eec
Q 006351 268 LSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRL----QQYLVRMDVVNQTSSENFQIHQLSSV-GHQ 342 (649)
Q Consensus 268 l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s~s~~----~~~~l~v~V~N~~~~~~~~l~Qvs~v-S~~ 342 (649)
+-.-+.|...++. .|.+ |....+.|..-+++....-..-+.+ ++..|.-.++|++.+..|. ..|+.- |-+
T Consensus 81 licavny~tq~ge-~myf---rkffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mfl-ekv~ldps~~ 155 (348)
T KOG2625|consen 81 LICAVNYKTQAGE-KMYF---RKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFL-EKVELDPSIH 155 (348)
T ss_pred EEEEEeeeccCcc-chhH---Hhhccccccccccccceeecccccccccchhhhhhhhhhcccccchhh-hhhccCchhe
Confidence 8888889887754 4655 4677888999898887655544432 3556666788887764331 112111 222
Q ss_pred eEEEeeCCCcccCCCcccCccceeeEEEEEeecCCCCCCCCCCCCCccee-eceeeecCCCccccccCCCcchhhhhhhh
Q 006351 343 WEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLL-GSDVSLQGTADTLFDISGSPLADFHAHER 421 (649)
Q Consensus 343 W~l~~l~~~~si~~~~~l~p~q~~~~~f~~~~~~~~~~~~~~~~s~~~~~-~sdv~l~~~~~~~~~~s~~P~~df~~~~r 421 (649)
+.+..+...+ ..|+-++.| ...+|+ ..|+ .++...-.|-+||+..-.
T Consensus 156 ynvt~i~~~~--------e~gdcvstf-----------------g~~~~lkp~d~-------rq~l~cl~pk~d~~~~~g 203 (348)
T KOG2625|consen 156 YNVTEIAHED--------EAGDCVSTF-----------------GSGALLKPKDI-------RQFLFCLKPKADFAEKAG 203 (348)
T ss_pred ecceeecchh--------hcccccccc-----------------ccccccCccch-------hhheeecCchHHHHHhhc
Confidence 3222211100 011111111 001111 1222 245555566677766532
Q ss_pred hccccccCCCCc-ceEEEEeccCccCCCCCCCCCceeeecccccccccCCCceEEEEeC-CCeEeccCCCCceeEEEEEE
Q 006351 422 LLQRVSQDDTNT-VDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDG-PRTLHHNFNASFCEVNLKMT 499 (649)
Q Consensus 422 ~~~~~~~~~~~~-ldliv~W~a~~~~~~~~~~~~~~~Gqhh~~~~~~~~~~pI~~~l~~-p~~i~HdF~~~~C~vpV~l~ 499 (649)
+- .+... =.+=+.|+.+..+.+. +.+ .....-.-+-..++.+++. |..|.-. .. .-|+-.
T Consensus 204 i~-----k~lt~igkldi~wktnlgekgr-lqt-------s~lqriapgygdvrlsle~~p~~vdle--ep---f~isck 265 (348)
T KOG2625|consen 204 II-----KDLTSIGKLDISWKTNLGEKGR-LQT-------SALQRIAPGYGDVRLSLEAIPACVDLE--EP---FEISCK 265 (348)
T ss_pred cc-----cccceeeeeEEEeecccccccc-chH-------HHHHhhcCCCCceEEEeeccccccccC--CC---eEEEEE
Confidence 11 01111 1233679976554432 111 0000000122466777643 5554322 11 124556
Q ss_pred EEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccCCcccccCceEEecc
Q 006351 500 IYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGS 579 (649)
Q Consensus 500 i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~w~G~ 579 (649)
|.|||...+|+.+++-.+. ++...|||.
T Consensus 266 i~ncseraldl~l~l~~~n----------------------------------------------------nrhi~~c~~ 293 (348)
T KOG2625|consen 266 ITNCSERALDLQLELCNPN----------------------------------------------------NRHIHFCGI 293 (348)
T ss_pred EcccchhhhhhhhhhcCCC----------------------------------------------------CceeEEecc
Confidence 8999999888888764321 345689998
Q ss_pred cceeE-EeCCCceEEEEeEEEEeeceeeecCCcEEEEEE
Q 006351 580 SASSV-RLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 617 (649)
Q Consensus 580 ~~~~~-~l~p~e~~~v~l~~~~~~pGvYdL~~~~~~~~~ 617 (649)
+-+.+ +|.|.+...+.|.+.-..-|.-.++|.|+.=.+
T Consensus 294 sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf 332 (348)
T KOG2625|consen 294 SGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTF 332 (348)
T ss_pred ccccccCCCCcceeeeEEeeccchhcceeecceEeehhh
Confidence 87754 599999999999999999999999998886443
No 12
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=91.44 E-value=2.1 Score=42.52 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=69.4
Q ss_pred CCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe-e---e-eeecCCCCCCCCeeeecCCCcccCCCCeEEE
Q 006351 180 SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA-E---Q-SVAGGNFNKMPQAVFSFPEGISIQGETPLLW 254 (649)
Q Consensus 180 ~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~-~---P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~i 254 (649)
.-|+|-++=.-++.-+..|+-..+.++|.|.|..++.++.+. + | .|.+-.. ..-..+ ..|+||+.++.
T Consensus 19 ~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG----~~s~~~---~~i~pg~~vsh 91 (181)
T PF05753_consen 19 SPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSG----SLSASW---ERIPPGENVSH 91 (181)
T ss_pred CCcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccC----ceEEEE---EEECCCCeEEE
Confidence 456777765667778999999999999999999999999999 2 2 2332211 111122 48999999999
Q ss_pred EEEEEecCCCceEE-EEEEEEecCCC
Q 006351 255 PLWYRAAVPGKISL-SITIYYEMGDV 279 (649)
Q Consensus 255 plwlra~~~G~~~l-~lLfyYe~~~~ 279 (649)
-+.+|+...|.+.+ ...+.|+..+.
T Consensus 92 ~~vv~p~~~G~f~~~~a~VtY~~~~~ 117 (181)
T PF05753_consen 92 SYVVRPKKSGYFNFTPAVVTYRDSEG 117 (181)
T ss_pred EEEEeeeeeEEEEccCEEEEEECCCC
Confidence 99999889998887 56666665543
No 13
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=82.02 E-value=8.9 Score=43.02 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=54.8
Q ss_pred ecceEEEEEEE-EEecccccccceEEeee-eeecCCCCCC-CC-eeeecCCCcccCCCCeEEEEEEEEecCCCceEEEEE
Q 006351 196 YAGDLRHLVLE-LKNQSDFSVKKMTNAEQ-SVAGGNFNKM-PQ-AVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSIT 271 (649)
Q Consensus 196 l~GEi~~~~l~-L~N~g~~pv~~l~v~~P-~~~~g~~~~~-~~-~vf~lp~~~~L~pGes~~iplwlra~~~G~~~l~lL 271 (649)
..||...=.|. |.|.|+..|.==|..-| +-.++..... .+ -.|+- ....|.||+++.+++|+++..+|...=.|.
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~-~~gvilPGe~~~~~~~F~s~~~Gif~E~W~ 322 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDT-SSGVILPGETRNFPFMFKSRKVGIFKERWE 322 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeC-CCCEECCCceEEEEEEEeCCCceEEEEEEE
Confidence 67888888888 99999998765555533 3333322111 12 23333 346999999999999999998887776766
Q ss_pred EEEecC
Q 006351 272 IYYEMG 277 (649)
Q Consensus 272 fyYe~~ 277 (649)
|.-.+.
T Consensus 323 L~t~P~ 328 (426)
T PF14646_consen 323 LRTFPP 328 (426)
T ss_pred EEEecc
Confidence 666443
No 14
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=78.75 E-value=5.2 Score=33.34 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=36.7
Q ss_pred cCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe
Q 006351 179 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA 221 (649)
Q Consensus 179 ~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~ 221 (649)
..-+.+.+.-..-+..+.-||...++|+++|.|..++.|+.+.
T Consensus 21 ~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~ 63 (76)
T PF01345_consen 21 VAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVT 63 (76)
T ss_pred cCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEE
Confidence 4445666666666888999999999999999999999999998
No 15
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=78.28 E-value=4.6 Score=34.84 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=40.3
Q ss_pred eEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccCCcccccC
Q 006351 493 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 572 (649)
Q Consensus 493 ~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 572 (649)
.|.++|++.|-++.++.+.+.+... =|+.+. |-.|.-+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f~sgq~-------------------------------~D~~v~-d~~g~~v---------- 38 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQFPSGQR-------------------------------YDFVVK-DKEGKEV---------- 38 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEESSS---------------------------------EEEEEE--TT--EE----------
T ss_pred CEEEEEEEEeCCCCeEEEEeCCCCE-------------------------------EEEEEE-CCCCCEE----------
Confidence 3678999999999888877664321 133332 1222222
Q ss_pred ceEEec-----ccceeEEeCCCceEEEEeEEEEee--ceeeec
Q 006351 573 PFIWSG-----SSASSVRLQPMSTTDIAMKVCLFS--PGTYDL 608 (649)
Q Consensus 573 ~f~w~G-----~~~~~~~l~p~e~~~v~l~~~~~~--pGvYdL 608 (649)
|.|+. +.....+|+|||+.+.+..+--.. ||.|-|
T Consensus 39 -wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 39 -WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp -EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred -EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 34443 333477799999999998887776 899865
No 16
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=77.91 E-value=41 Score=35.86 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=61.9
Q ss_pred CcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeee---cCCCcccCCCCeEEEEEEEEec---CCCc
Q 006351 192 PERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFS---FPEGISIQGETPLLWPLWYRAA---VPGK 265 (649)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~---lp~~~~L~pGes~~iplwlra~---~~G~ 265 (649)
...+..|+..++-|.++|.|..++.=..|. .-|..- ..-+..+-+ ..-+..++||+..+++-.+... .++.
T Consensus 92 ~~~l~aG~~~~~LvgftN~g~~~~~V~~i~-aSl~~p--~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~ 168 (285)
T PF03896_consen 92 TKKLPAGEPVKFLVGFTNKGSEPFTVESIE-ASLRYP--QDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRP 168 (285)
T ss_pred cccccCCCeEEEEEEEEeCCCCCEEEEEEe-eeecCc--cccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcc
Confidence 356899999999999999998654322222 111100 000111111 1225689999999999999974 5778
Q ss_pred eEEEEEEEEecCCCCccceEEEEEEEEEEE
Q 006351 266 ISLSITIYYEMGDVSSVIKYRLLRMHYNLE 295 (649)
Q Consensus 266 ~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~ 295 (649)
..|.+.++|+..+++ .|...=+...|+
T Consensus 169 f~L~i~l~y~d~~g~---~y~~~~fN~TV~ 195 (285)
T PF03896_consen 169 FGLVINLIYEDSDGN---QYQVTVFNGTVT 195 (285)
T ss_pred eEEEEEEEEEeCCCC---EEEEEEecceEE
Confidence 899999999966643 254333444433
No 17
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=75.48 E-value=7 Score=33.32 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=39.9
Q ss_pred eEEEEEEEEEecccccccceEEe-eeee-ecCCCCCCCCeeeecCCC-cccCCCCeEEEE
Q 006351 199 DLRHLVLELKNQSDFSVKKMTNA-EQSV-AGGNFNKMPQAVFSFPEG-ISIQGETPLLWP 255 (649)
Q Consensus 199 Ei~~~~l~L~N~g~~pv~~l~v~-~P~~-~~g~~~~~~~~vf~lp~~-~~L~pGes~~ip 255 (649)
...+..+.|+|.|..|++++.+. +.+. .+=+-++.....|.||+. ..|+||+++.+-
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FG 76 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFG 76 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEECccchhheeEEeccCCEEECCccccccCCCCEEEEE
Confidence 46789999999999999999999 4221 000001234457888875 389999998753
No 18
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=75.11 E-value=62 Score=36.91 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=87.3
Q ss_pred ccCCcceecceEEEEEEEEEecccccccceEEe--ee--eee-cCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec--
Q 006351 189 HPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ--SVA-GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA-- 261 (649)
Q Consensus 189 ~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P--~~~-~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~-- 261 (649)
...|..+.-|+...+++.|+|.|..+++++-+. +| ++. +... +..+- -..|.||++..+.+-+-+-
T Consensus 157 ~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~~i~~~----~~~~~---i~~l~p~es~~v~f~v~~~~~ 229 (500)
T COG1361 157 VSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLGPIYSA----NDTPY---IGALGPGESVNVTFSVYAGSN 229 (500)
T ss_pred ecCccccCCCCccEEEEEEEeCCcccccceEEEEeCCcceecccccc----cccee---eeeeCCCceEEEEEEEEeecC
Confidence 345778999999999999999999999999998 33 111 1110 10111 1489999999999999876
Q ss_pred -CCCceEEEEEEEEecCCCCccceEEEEEEEEEEEEeeeeeEEEEEeecc---cccceEEEEEEEEeCCC
Q 006351 262 -VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWS---SRLQQYLVRMDVVNQTS 327 (649)
Q Consensus 262 -~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s~---s~~~~~~l~v~V~N~~~ 327 (649)
..|.+.+++.+-|...+ ...+.-.....+.+.....+..+..-.. -......+.+++.|.+.
T Consensus 230 a~~g~y~i~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~~~~~i~~~~~~~~~ 295 (500)
T COG1361 230 AEPGTYTINLEITYKDEE----GSVKSPTITIGIVVVGEPKLDISNVKFDPGVIPLGGVSIEITITIENS 295 (500)
T ss_pred CCCccEEEEEEEEEecCC----ccccccceEEEEecCCceeEEEEEEEecCCeeccceeEEEEEEEEEec
Confidence 58999999999999954 2334445555666666666665432222 22456666666666554
No 19
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=74.95 E-value=19 Score=38.61 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=67.7
Q ss_pred ceEEEEeCCCeEeccCCCCceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccc
Q 006351 472 PITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDI 551 (649)
Q Consensus 472 pI~~~l~~p~~i~HdF~~~~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~ 551 (649)
-|+.+..+|..|+ -....-.++.+.|.|+.+.++.+....+......-+ ....+...+.+++.+= ...|
T Consensus 157 gv~~sF~gp~~V~-----~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~-~~~~~~~~~s~~~~~~----~~~~- 225 (306)
T PF12735_consen 157 GVTFSFSGPSSVK-----VGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERS-NSPPPNPSSSSNLNNK----QIAD- 225 (306)
T ss_pred CeEEEEeCCceEe-----cCCeEEEEEEEEECCCCCeeEEEEecCccccccccc-cCCCCCcccccccccc----cccc-
Confidence 4555555553332 345567899999999999999988877332211000 0000001011101000 0000
Q ss_pred eecccCCCcccccCCcccc-cCceEEecccceeEEeCCCceEEEEeEEEEeeceeeecCCcEE
Q 006351 552 KVTSQLPLNQVKRSSLLES-VSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYAL 613 (649)
Q Consensus 552 ~~~~~~~~~~~~~p~~~~~-~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~~~pGvYdL~~~~~ 613 (649)
...+--..|...-.+... ..--++...-.+-.-|.||++..+.|+.--+++|+|+|.+-+|
T Consensus 226 -~v~~en~~~~~~~~~~~~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkv 287 (306)
T PF12735_consen 226 -AVTDENIVQAMQKYSSVEESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKV 287 (306)
T ss_pred -cceehhHHHHhhhhcccccCCceEEecccccccccCCCceEEEEEEEEEeccceEeecceEE
Confidence 011111111111100000 1234556555555579999999999999999999999999443
No 20
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=73.89 E-value=14 Score=32.28 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=25.7
Q ss_pred eccCCC--CceeEEEEEEEEeCCCccEeEEEEc
Q 006351 484 HHNFNA--SFCEVNLKMTIYNSSDAAMFVRVNT 514 (649)
Q Consensus 484 ~HdF~~--~~C~vpV~l~i~N~s~~~v~v~i~~ 514 (649)
.-||.. --+..-.++.|.|.|..++++.+..
T Consensus 10 ~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~ 42 (102)
T PF14874_consen 10 ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQ 42 (102)
T ss_pred EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEe
Confidence 446777 6677789999999999999999875
No 21
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=71.26 E-value=14 Score=35.51 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred ceecceEEEEEEEEEecccccccceEEeeeeeecCCCC-CCCCeeeecCCCcccCCCCeEEEEEEE
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFN-KMPQAVFSFPEGISIQGETPLLWPLWY 258 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~-~~~~~vf~lp~~~~L~pGes~~iplwl 258 (649)
.++..-.+-+.|.|+|.|..++++|++. +++ ...-.+..|++=..|+||++.+.-|-+
T Consensus 80 ~~~s~~mvsIql~ftN~s~~~i~~I~i~-------~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 80 SLYSPSMVSIQLTFTNNSDEPIKNIHIG-------EKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred cCCCCCcEEEEEEEEecCCCeecceEEC-------CCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 3577778889999999999999999998 222 112345556666689999998877654
No 22
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=71.08 E-value=7.2 Score=34.75 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCcceecceEEEEEEEEEecccccccceEEe-eeeeecCCCCCC---CCeeeecCCCcccCCCCeEEEEEEEEecCCCc
Q 006351 191 LPERAYAGDLRHLVLELKNQSDFSVKKMTNA-EQSVAGGNFNKM---PQAVFSFPEGISIQGETPLLWPLWYRAAVPGK 265 (649)
Q Consensus 191 lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~-~P~~~~g~~~~~---~~~vf~lp~~~~L~pGes~~iplwlra~~~G~ 265 (649)
++..+.-|+-..+.++++|.+..+++++.+. ..+-..|+.-.. ....+ ...|+||++.++.+-+.....|.
T Consensus 7 ~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~----~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 7 LPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKF----EVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp EESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEE----EEEE-TTEEEEEEEEE-HHSHEE
T ss_pred ECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEc----ceeeCCCCEEEEEEEEEceeEec
Confidence 3556779999999999999999999999988 442222221100 01111 24899999999999998887665
No 23
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=69.88 E-value=68 Score=27.24 Aligned_cols=69 Identities=29% Similarity=0.350 Sum_probs=44.4
Q ss_pred ccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 006351 26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 105 (649)
Q Consensus 26 ~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 105 (649)
.......|+++.|.+.++|-=... ..++.+.+..... . ...
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~--~-----------------------------------~~~ 51 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGN--S-----------------------------------VST 51 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTE--E-----------------------------------EEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCc--e-----------------------------------ecc
Confidence 345567899999999999964444 5555555431111 0 012
Q ss_pred eeE-EECCCceEEEEEEEEecceEEEEEE
Q 006351 106 VDI-SLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 106 ~~i-~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
..+ .|+|++++++.+.+.+...|...|.
T Consensus 52 ~~i~~L~~g~~~~v~~~~~~~~~G~~~i~ 80 (101)
T PF07705_consen 52 VTIPSLAPGESETVTFTWTPPSPGSYTIR 80 (101)
T ss_dssp EEESEB-TTEEEEEEEEEE-SS-CEEEEE
T ss_pred EEECCcCCCcEEEEEEEEEeCCCCeEEEE
Confidence 456 8999999999999999999988865
No 24
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=68.73 E-value=24 Score=29.53 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=18.0
Q ss_pred EeCCCceEEEEeEEEEe---eceeeecC
Q 006351 585 RLQPMSTTDIAMKVCLF---SPGTYDLS 609 (649)
Q Consensus 585 ~l~p~e~~~v~l~~~~~---~pGvYdL~ 609 (649)
.|+||++..+.+.+-+- .||.|.|.
T Consensus 45 ~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 79999999999998874 47887764
No 25
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=68.54 E-value=12 Score=32.95 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=39.2
Q ss_pred ceEEEEEEEEEeccccccc-ceEEeeeeeecCCCCCCCCeee-ecCCCcccCCCCeEEEEEEEEec--CCCc-eEEEEEE
Q 006351 198 GDLRHLVLELKNQSDFSVK-KMTNAEQSVAGGNFNKMPQAVF-SFPEGISIQGETPLLWPLWYRAA--VPGK-ISLSITI 272 (649)
Q Consensus 198 GEi~~~~l~L~N~g~~pv~-~l~v~~P~~~~g~~~~~~~~vf-~lp~~~~L~pGes~~iplwlra~--~~G~-~~l~lLf 272 (649)
+..+...|.|+|.|..++. .|+..+| ..| .-|..+.|.||++.++-|++++. ..+. ..=+|+|
T Consensus 17 ~~~~~~~l~l~N~s~~~i~fKiktt~~------------~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~~~~dkf~I 84 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAFKIKTTNP------------NRYRVKPSYGIIEPGESVEITITFQPFDFEPSNKKKDKFLI 84 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEEEEEES-T------------TTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTSTSSEEEEE
T ss_pred CceEEEEEEEECCCCCcEEEEEEcCCC------------ceEEecCCCEEECCCCEEEEEEEEEecccCCCCCCCCEEEE
Confidence 5569999999999987643 1211122 112 13445799999999999999985 2221 1445555
Q ss_pred EEecC
Q 006351 273 YYEMG 277 (649)
Q Consensus 273 yYe~~ 277 (649)
+|-..
T Consensus 85 ~~~~~ 89 (109)
T PF00635_consen 85 QSIVV 89 (109)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 55443
No 26
>PF13584 BatD: Oxygen tolerance
Probab=66.79 E-value=1.1e+02 Score=34.75 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=51.8
Q ss_pred ceEEEEEEEEecceEEEEEEEEEEEEcceeeeeEeeeecccccccccccccccCCCCCceEEEEecCCCeEEEEEccCCc
Q 006351 114 ETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPE 193 (649)
Q Consensus 114 etk~v~L~v~P~~~G~L~I~Gv~~~l~~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL~~~V~~~~P~L~v~~~~lP~ 193 (649)
......+.+.|+++|.++|-.+.+++.|...-...+.++-. +........ .......-.|++.++ +.
T Consensus 71 ~~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~-----~~~~~~~~~------~~~~~~~~~l~~~v~--~~ 137 (484)
T PF13584_consen 71 SSTTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVS-----KASQSPSQP------PSNADDDVFLEAEVS--KK 137 (484)
T ss_pred EEEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEEEE-----ecccCCccc------cccccccEEEEEEeC--CC
Confidence 46778889999999999999999999884322223322211 110000000 000111223333333 56
Q ss_pred ceecceEEEEEEEEEeccccc
Q 006351 194 RAYAGDLRHLVLELKNQSDFS 214 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~p 214 (649)
.+|.||-..++++|.=.....
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~~ 158 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNFR 158 (484)
T ss_pred ceecCCcEEEEEEEEEecCch
Confidence 799999999999987666554
No 27
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=65.45 E-value=34 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=29.7
Q ss_pred eEEECCCceEEEEEEEEecceEEEEEEEEEEEEcc
Q 006351 107 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 141 (649)
Q Consensus 107 ~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~~ 141 (649)
.|.+..++..++.|.+.|.+.|.|..=.|+.+-..
T Consensus 80 ~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 80 VFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred eEEecCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 67778889999999999999999998877766544
No 28
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=61.91 E-value=33 Score=31.79 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=46.5
Q ss_pred CcceecceEEEEEEEEEeccccccc-ceEEe----ee--eeecCCCCC--CCCe------eeecCCCcccCCCCeEEEEE
Q 006351 192 PERAYAGDLRHLVLELKNQSDFSVK-KMTNA----EQ--SVAGGNFNK--MPQA------VFSFPEGISIQGETPLLWPL 256 (649)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~g~~pv~-~l~v~----~P--~~~~g~~~~--~~~~------vf~lp~~~~L~pGes~~ipl 256 (649)
...+--|+.+.+.|.|.|.+..+++ ++.+. +. .+....... .... ....|....|+||+++.+++
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~ 99 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTF 99 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEE
Confidence 3456679999999999999987665 33332 11 233332221 1111 22345568999999999999
Q ss_pred EEEecC
Q 006351 257 WYRAAV 262 (649)
Q Consensus 257 wlra~~ 262 (649)
.|..|.
T Consensus 100 ~i~~P~ 105 (121)
T PF06030_consen 100 TIKMPK 105 (121)
T ss_pred EEEcCC
Confidence 999994
No 29
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=61.52 E-value=55 Score=28.19 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=38.4
Q ss_pred EEEEEEEeCCccCcEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 006351 36 VKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (649)
Q Consensus 36 i~V~V~l~NPL~ipl~l~-------~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 108 (649)
+.+.++++|+=.-++.|+ |+.|. ++++.. . =.=+++..|++...+.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~----d~~g~~------------------v-----wrwS~~~~FtQal~~~ 54 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVK----DKEGKE------------------V-----WRWSDGKMFTQALQEE 54 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-----TT--E------------------E-----EETTTT-------EEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEE----CCCCCE------------------E-----EEecCCchhhheeeEE
Confidence 678899999999888886 22222 111110 0 0123466788888999
Q ss_pred EECCCceEEEEEEEEecc--eEEEEEE
Q 006351 109 SLGGAETILVQLMVTPKV--EGILKIV 133 (649)
Q Consensus 109 ~L~p~etk~v~L~v~P~~--~G~L~I~ 133 (649)
+|.|+|+++.+..+-... +|..++.
T Consensus 55 ~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 55 TLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCceEEEe
Confidence 999999999998887766 7877764
No 30
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=61.11 E-value=25 Score=34.05 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred EEEEecCCCeEEEEEccC--CcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCC--CCCeeeecCCCcccCCC
Q 006351 174 KFIVIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNK--MPQAVFSFPEGISIQGE 249 (649)
Q Consensus 174 ~~~V~~~~P~L~v~~~~l--P~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~--~~~~vf~lp~~~~L~pG 249 (649)
..++.+.|||= |... ...+.=||...+.-+.+|.+..|+....+= -++.+.... ..-.-|=| +...|+||
T Consensus 43 ~a~~~~~lpW~---F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~--nV~P~~a~~YF~KieCFCF-~eQ~L~pg 116 (152)
T PF04442_consen 43 DANVNPGLPWE---FKPEQRSVKVHPGETALVFYEATNPSDKPITGQAIP--NVTPGEAGKYFNKIECFCF-EEQTLAPG 116 (152)
T ss_dssp EEEE-TTS-EE---EE-S-SEEEEETT--EEEEEEEEE-SSS-EE---EE--EE-SSS-STTECCS-TTS--S--EE-TT
T ss_pred EeecCCCCceE---EEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEee--eECHHHhhhhccccceEec-cCcCcCCC
Confidence 34445556652 2222 224778999999999999999988765544 111110000 00011112 25699999
Q ss_pred CeEEEEEEEE
Q 006351 250 TPLLWPLWYR 259 (649)
Q Consensus 250 es~~iplwlr 259 (649)
|++++|+.+-
T Consensus 117 E~~~mPv~F~ 126 (152)
T PF04442_consen 117 ETVDMPVVFY 126 (152)
T ss_dssp -EEEEEEEEE
T ss_pred CeEEEEEEEE
Confidence 9999999764
No 31
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=60.60 E-value=12 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=26.7
Q ss_pred cceecceEEEEEEEEEecccccccceEEe
Q 006351 193 ERAYAGDLRHLVLELKNQSDFSVKKMTNA 221 (649)
Q Consensus 193 ~~ll~GEi~~~~l~L~N~g~~pv~~l~v~ 221 (649)
..+.-|+....+|+++|.|..++.++.+.
T Consensus 6 ~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~ 34 (53)
T TIGR01451 6 TVATIGDTITYTITVTNNGNVPATNVVVT 34 (53)
T ss_pred cccCCCCEEEEEEEEEECCCCceEeEEEE
Confidence 45678999999999999999999999998
No 32
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=58.81 E-value=23 Score=35.43 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=42.2
Q ss_pred ceecceEEEEEEEEEecccccccceEEe--ee-----eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEe
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-----SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA 260 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-----~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra 260 (649)
.+.=||...+.-+.+|.+..|+....+= .| +| . .-.-|=|. ...|+|||++++|+.+-=
T Consensus 89 ~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P~~a~~YF------~-KieCFCF~-eQ~L~pgE~~~mPV~F~I 154 (188)
T PRK05089 89 DVHPGELNLVFYEAENLSDRPIVGQAIPSVTPGQAGAYF------N-KIECFCFT-QQTLQPGETREMPVVFYV 154 (188)
T ss_pred EEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhc------c-ceeeeccc-CcccCCCCeEecCEEEEE
Confidence 4788999999999999999998876655 33 11 0 00122222 569999999999997753
No 33
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=57.44 E-value=90 Score=27.21 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=50.7
Q ss_pred ceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEE
Q 006351 198 GDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 274 (649)
Q Consensus 198 GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyY 274 (649)
+...++.+.+.|.+..+++++.+. -| ++.+- ...+.+..|+||+..+--+.+.++.++...+++=+-|
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~---------l~~~s~~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy 87 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQ---------LQPPSSPTLPPGGQITQVLKVENPGKFPLRLRLRLSY 87 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEE---------EcCCCCCccCCCCCEEEEEEEECCCCCCEEEEEEEEE
Confidence 445689999999999999999988 44 32221 1122345799999998899999887666666666666
Q ss_pred ecC
Q 006351 275 EMG 277 (649)
Q Consensus 275 e~~ 277 (649)
.-.
T Consensus 88 ~~~ 90 (104)
T smart00809 88 LLG 90 (104)
T ss_pred EEC
Confidence 544
No 34
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=56.74 E-value=28 Score=28.11 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=38.2
Q ss_pred cccCceEEecccceeEEeCCCceEEEEeEEEEeeceeeecCC
Q 006351 569 ESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSN 610 (649)
Q Consensus 569 ~~~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~~~pGvYdL~~ 610 (649)
+-+..|+-+|-...+.++-|++..+++.+-.-+.+|-|-|=.
T Consensus 13 ~~n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~ 54 (57)
T PF12742_consen 13 DKNDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPK 54 (57)
T ss_pred cCCCceEEEccceeEEEEccCceEEEEEEEEEeehheecCcc
Confidence 337889999999999999999999999999999999998754
No 35
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=55.96 E-value=52 Score=28.39 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.7
Q ss_pred EEEEEEEeCCCccEeEEEEc
Q 006351 495 NLKMTIYNSSDAAMFVRVNT 514 (649)
Q Consensus 495 pV~l~i~N~s~~~v~v~i~~ 514 (649)
.|.|+|+|.....+.|.|.-
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~ 40 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYD 40 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEe
Confidence 68889999988888888875
No 36
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=55.51 E-value=61 Score=34.93 Aligned_cols=144 Identities=18% Similarity=0.130 Sum_probs=81.2
Q ss_pred eEEECCCceEEEEEEEEecceEEEEEEEEEEEEcceeeeeEeeeeccccccccc-ccccccCCCCCceEEEEecCCCeEE
Q 006351 107 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAK-GRRKVKSSPSNDLKFIVIKSLPKLE 185 (649)
Q Consensus 107 ~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~~~v~g~~~fe~~g~RL~~tk-~r~~~~~~pd~rL~~~V~~~~P~L~ 185 (649)
-|++.|+.--.|.|.=-|--+|. =-||.|.+...+- .-.=+...+| +.-. .=+..+|+|.+. .++|..+
T Consensus 114 ~f~~pp~~P~SVtLQp~p~D~gK--pcGVdyevkaF~~-~s~edk~hKr-~sVrL~IRKvqyAP~~~------GpqP~~~ 183 (402)
T KOG3865|consen 114 TFEFPPNLPCSVTLQPGPEDTGK--PCGVDYEVKAFVA-DSEEDKIHKR-NSVRLVIRKVQYAPLEP------GPQPSAE 183 (402)
T ss_pred EEeCCCCCCceEEeccCCccCCC--cccceEEEEEEec-CCcccccccc-cceeeeeeeeeecCCCC------CCCchhH
Confidence 46667776666666555555553 4577777654211 1111111111 1100 123456776433 2556555
Q ss_pred EE----EccC--------C-cceecceEEEEEEEEEecccccccceEEe---ee-eeecCC-CCCCCCeeeecCCCcccC
Q 006351 186 GL----IHPL--------P-ERAYAGDLRHLVLELKNQSDFSVKKMTNA---EQ-SVAGGN-FNKMPQAVFSFPEGISIQ 247 (649)
Q Consensus 186 v~----~~~l--------P-~~ll~GEi~~~~l~L~N~g~~pv~~l~v~---~P-~~~~g~-~~~~~~~vf~lp~~~~L~ 247 (649)
+. ++.- . +--|.||-..+.+.++|.++..++.|++. +. .+.|.+ ..+...+-....++..+.
T Consensus 184 v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~ 263 (402)
T KOG3865|consen 184 VSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVA 263 (402)
T ss_pred hhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEecccccceeeeeecccCCccC
Confidence 42 1111 1 22689999999999999999999999988 34 444432 111111222234567899
Q ss_pred CCCeEEEEEEEEe
Q 006351 248 GETPLLWPLWYRA 260 (649)
Q Consensus 248 pGes~~iplwlra 260 (649)
||.+.+=-+.+-.
T Consensus 264 Pgstl~Kvf~l~P 276 (402)
T KOG3865|consen 264 PGSTLSKVFTLTP 276 (402)
T ss_pred CCCeeeeeEEech
Confidence 9999887776643
No 37
>PF13584 BatD: Oxygen tolerance
Probab=55.12 E-value=3.6e+02 Score=30.52 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=89.1
Q ss_pred EEECCCceEEEE---EEEEecceEEEEEEEEEEEEcceee-eeEe-eeecccccccccccccccCCCCCceEEEEe--cC
Q 006351 108 ISLGGAETILVQ---LMVTPKVEGILKIVGVRWRLSGSLV-GVYN-FESNLVKKKIAKGRRKVKSSPSNDLKFIVI--KS 180 (649)
Q Consensus 108 i~L~p~etk~v~---L~v~P~~~G~L~I~Gv~~~l~~~v~-g~~~-fe~~g~RL~~tk~r~~~~~~pd~rL~~~V~--~~ 180 (649)
..+.+..-..+. ..++|.++|.|.|-..++++.-... ++.+ |..... +.+.....++ .+.++|. |.
T Consensus 187 ~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~~fg~~~~-----~~~~~~~~s~--~~~i~V~plP~ 259 (484)
T PF13584_consen 187 ERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVSDPSGRRDFFGGNFG-----RSRPVSISSE--PLTITVKPLPA 259 (484)
T ss_pred EEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEecccCccCccccccc-----cceeEEecCC--CeEEEeccCCc
Confidence 456665555555 6799999999999988887754211 1111 111000 0111112223 3344443 33
Q ss_pred -------CCe---EEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCC--cccC-
Q 006351 181 -------LPK---LEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEG--ISIQ- 247 (649)
Q Consensus 181 -------~P~---L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~--~~L~- 247 (649)
.|. +++...--|..+-.||....+|+|+=.|..+.-. -|-+.+. ..-.+|.-+.. ....
T Consensus 260 ~~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~~~~----lP~l~~~----~~~~vy~~~~~~~~~~~~ 331 (484)
T PF13584_consen 260 EGAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNLPSIQ----LPPLNLP----KGFRVYPPKPQEQDKPSG 331 (484)
T ss_pred ccCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEEcchhccc----CCCCCCC----cccEEcCCCccccccccC
Confidence 122 3333332367899999999999998777655111 1200011 01123321000 0111
Q ss_pred --CCCeEEEEEEEEecCCCceEE-EEEE-EEecCCCCccceEEEEEE-EEEEEEeeee
Q 006351 248 --GETPLLWPLWYRAAVPGKISL-SITI-YYEMGDVSSVIKYRLLRM-HYNLEVLPSL 300 (649)
Q Consensus 248 --pGes~~iplwlra~~~G~~~l-~lLf-yYe~~~~~~~~~~R~~R~-~~~i~V~pSL 300 (649)
...+++.-+.+.+...|...| .+=| ||-+.. -+|++++. ...|+|.++-
T Consensus 332 ~g~~g~~~~~~~~ip~~~G~~~lP~i~~~~fdp~~----~~y~~~~~~~~~i~V~~~~ 385 (484)
T PF13584_consen 332 GGLTGSRTFKYTLIPKKPGDFTLPAIRFSWFDPQT----GKYETATLPPITITVAPSA 385 (484)
T ss_pred CcceEEEEEEEEEEeCCCCeEEcCCeEEEEEcCCC----CeEEEEEcCCEEEEEecCC
Confidence 234678888899999999887 3333 554443 24666654 2444444443
No 38
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=53.44 E-value=28 Score=35.96 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=47.8
Q ss_pred EecCCCeEEEEEccCC--cceecceEEEEEEEEEecccccccceEEe--ee-----eeecCCCCCCCCeeeecCCCcccC
Q 006351 177 VIKSLPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-----SVAGGNFNKMPQAVFSFPEGISIQ 247 (649)
Q Consensus 177 V~~~~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-----~~~~g~~~~~~~~vf~lp~~~~L~ 247 (649)
|.+.|||- |...- ..+.-||...+.-+.+|.+..|+....+= .| +|. .-.-|=| +...|+
T Consensus 117 v~~~lpW~---F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P~~Ag~YFn-------KieCFCF-~eQ~L~ 185 (232)
T PTZ00128 117 TGSTMPWE---FEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFN-------KIQCFCF-EEQRLN 185 (232)
T ss_pred CCCCCCce---EEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhcc-------ceeeecc-cccccC
Confidence 33556653 43322 34889999999999999999998876654 33 110 0012222 156999
Q ss_pred CCCeEEEEEEEE
Q 006351 248 GETPLLWPLWYR 259 (649)
Q Consensus 248 pGes~~iplwlr 259 (649)
|||++++|+.+-
T Consensus 186 pgE~~~MPV~F~ 197 (232)
T PTZ00128 186 PHEEVDMPVFFY 197 (232)
T ss_pred CCCeEecCEEEE
Confidence 999999999775
No 39
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.36 E-value=60 Score=37.27 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=67.3
Q ss_pred CCCceEEEEeCCCeEeccCCCCceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCccccccc
Q 006351 469 GKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVL 548 (649)
Q Consensus 469 ~~~pI~~~l~~p~~i~HdF~~~~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~ 548 (649)
...|+.++.+-|+ |..=-=.+||+..|+|.++...||.|++-.
T Consensus 690 e~iPlhvnadlps-----fgrVReslpvkyhLqnktdlvqdveisvep-------------------------------- 732 (809)
T KOG4386|consen 690 EAIPLHVNADLPS-----FGRVRESLPVKYHLQNKTDLVQDVEISVEP-------------------------------- 732 (809)
T ss_pred eeccceeecCCCC-----cceecccccEEEEeccccceeeeEEeeccc--------------------------------
Confidence 4467777665554 555223579999999999988888887621
Q ss_pred ccceecccCCCcccccCCcccccCceEEecccceeEEeCCCceEEEEeEEEEeeceeeecCCcEEEEEE
Q 006351 549 TDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 617 (649)
Q Consensus 549 ~~~~~~~~~~~~~~~~p~~~~~~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~~~pGvYdL~~~~~~~~~ 617 (649)
+..||++|.-+.++++-||.+.++-....-+.+|--+|-. ++.++
T Consensus 733 ----------------------sDaFMFSGlkqirlriLPGteqemlynfypLmAGyqqlPs--lninl 777 (809)
T KOG4386|consen 733 ----------------------SDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPS--LNINL 777 (809)
T ss_pred ----------------------chhheecccceEEEEEcCCCceEEEEEEehhhchhhhCCc--ccccC
Confidence 2459999999999999999999999999999999877743 44444
No 40
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=51.24 E-value=58 Score=30.16 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=47.0
Q ss_pred eEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccCCcccccC
Q 006351 493 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 572 (649)
Q Consensus 493 ~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 572 (649)
...+++.|+|.++.++.|.+......++ ..|=.|.+..+. +. + +..+....
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn------------------~nG~I~Y~~~~~-~~----d------~sl~~~~~ 78 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTN------------------DNGVIDYSQNNP-KK----D------KSLKYPFS 78 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEec------------------CCEEEEECCCCc-cc----C------cccCcchH
Confidence 5679999999999999888888765533 122222222110 00 0 00001111
Q ss_pred ceEEecccceeEEeCCCceEEEEeEEEEee
Q 006351 573 PFIWSGSSASSVRLQPMSTTDIAMKVCLFS 602 (649)
Q Consensus 573 ~f~w~G~~~~~~~l~p~e~~~v~l~~~~~~ 602 (649)
-|...... ++|+|+++..|.+.+.+..
T Consensus 79 --~~v~~~~~-Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 79 --DLVKIPKE-VTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred --HhccCCcE-EEECCCCEEEEEEEEEcCC
Confidence 25545555 9999999999999987654
No 41
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=48.66 E-value=62 Score=28.47 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=23.3
Q ss_pred ceEEEEEEEeCCccCcEEeeeEEEEEEE
Q 006351 34 EPVKVDIEFKNPLQIPISISNISLICEL 61 (649)
Q Consensus 34 Epi~V~V~l~NPL~ipl~l~~I~L~~~f 61 (649)
-.+.+.+.++||-.+|+.+.++.-...+
T Consensus 15 ~~~~l~l~v~NPN~~~l~~~~~~y~l~~ 42 (100)
T smart00769 15 IEIVLKVKVQNPNPFPIPVNGLSYDLYL 42 (100)
T ss_pred EEEEEEEEEECCCCCccccccEEEEEEE
Confidence 4588889999999999999999855443
No 42
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=47.90 E-value=74 Score=31.69 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=40.2
Q ss_pred eecceEEEEEEEEEecccccccceEEe--ee-----eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEE
Q 006351 195 AYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-----SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYR 259 (649)
Q Consensus 195 ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-----~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlr 259 (649)
+.=||+-.+.-+-+|.+..|+..-.+- -| +|. ....|=|. ...|+|||++++|+.+-
T Consensus 89 v~pGet~~~~y~a~N~sd~~itg~A~~nv~P~~Ag~YF~-------KveCFCFt-eq~L~pgE~vemPV~Ff 152 (195)
T COG3175 89 VRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFN-------KVECFCFT-EQTLKPGETVEMPVVFF 152 (195)
T ss_pred eccCceEEEEEEEecCCCCCceeEEecccChhHhhhhee-------eeeEEEee-ecccCCCCeEeccEEEE
Confidence 567999999999999999988765544 22 110 01122232 56999999999999774
No 43
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=44.53 E-value=1.2e+02 Score=27.43 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=39.0
Q ss_pred eecceEEE-EEEEEEeccccccc-ceEEe-eeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec-C---CCceE
Q 006351 195 AYAGDLRH-LVLELKNQSDFSVK-KMTNA-EQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA-V---PGKIS 267 (649)
Q Consensus 195 ll~GEi~~-~~l~L~N~g~~pv~-~l~v~-~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~-~---~G~~~ 267 (649)
+-.|.++- .++.|.|.+..+.. .|.+. .|= ..+..-.....|+||++.++++.+++| . .|.+.
T Consensus 26 ~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~----------~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~~ 95 (118)
T PF11614_consen 26 LSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPG----------AELQGPENTITVPPGETREVPVFVTAPPDALKSGSTP 95 (118)
T ss_dssp ----SEEEEEEEEEEE-SSS-EEEEEEEES-SS-----------EE-ES--EEEE-TT-EEEEEEEEEE-GGG-SSSEEE
T ss_pred cCCCeEEEEEEEEEEECCCCCEEEEEEEecCCC----------eEEECCCcceEECCCCEEEEEEEEEECHHHccCCCee
Confidence 34476664 57899999987755 44444 221 111111124579999999999999998 2 36788
Q ss_pred EEEEEEE
Q 006351 268 LSITIYY 274 (649)
Q Consensus 268 l~lLfyY 274 (649)
+.|-+.+
T Consensus 96 i~f~v~~ 102 (118)
T PF11614_consen 96 ITFTVTD 102 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888884
No 44
>PRK13202 ureB urease subunit beta; Reviewed
Probab=43.05 E-value=47 Score=30.04 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=38.3
Q ss_pred CcceecceEEEEEEEEEeccccccc---ceEEe--eeeeecCCCCCCCCeeeecCC--CcccCCCCeEEEEEEE
Q 006351 192 PERAYAGDLRHLVLELKNQSDFSVK---KMTNA--EQSVAGGNFNKMPQAVFSFPE--GISIQGETPLLWPLWY 258 (649)
Q Consensus 192 P~~ll~GEi~~~~l~L~N~g~~pv~---~l~v~--~P~~~~g~~~~~~~~vf~lp~--~~~L~pGes~~iplwl 258 (649)
+-.+..|....++|+++|.|..|+. ..... +|.+.|. .++.-..=++.|. ....+||+++++.|.=
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FD-R~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFD-RATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeec-HhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4456777667899999999999863 11111 2323332 1111011112343 3578899999999864
No 45
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=41.58 E-value=2.1e+02 Score=25.49 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=49.8
Q ss_pred cceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEe-----cCCCceEE
Q 006351 197 AGDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA-----AVPGKISL 268 (649)
Q Consensus 197 ~GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra-----~~~G~~~l 268 (649)
.+...++.+.+.|.+..+++++.+. -| .+.+. + .-+++..|+||+..+--|-+.. +......+
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~--------l-~~~s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~ 92 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQ--------L-QPPSSSTIPPGQQITQVIKVENSPFSEPTPKPLKP 92 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEE--------E-EESS-SSB-TTTEEEEEEEEEESS-BSTTSSTTEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEE--------E-eCCCCCeeCCCCeEEEEEEEEEeecccCCCCCcCe
Confidence 6778899999999999999999988 33 22221 1 1123568999999888888887 44455677
Q ss_pred EEEEEEecCC
Q 006351 269 SITIYYEMGD 278 (649)
Q Consensus 269 ~lLfyYe~~~ 278 (649)
++-+.|.-.+
T Consensus 93 ~~~vsy~~~g 102 (115)
T PF02883_consen 93 RLRVSYNVGG 102 (115)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEECC
Confidence 8888886665
No 46
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=40.39 E-value=90 Score=27.51 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=17.3
Q ss_pred eeEEeCCCceEEEEeEEEEeeceeeecCC
Q 006351 582 SSVRLQPMSTTDIAMKVCLFSPGTYDLSN 610 (649)
Q Consensus 582 ~~~~l~p~e~~~v~l~~~~~~pGvYdL~~ 610 (649)
....|+||++.++.+ ....||+|++-.
T Consensus 66 ~~~~l~~g~~~~~~f--~~~~~G~y~~~C 92 (104)
T PF13473_consen 66 ISKVLPPGETATVTF--TPLKPGEYEFYC 92 (104)
T ss_dssp EEEEE-TT-EEEEEE--EE-S-EEEEEB-
T ss_pred eEEEECCCCEEEEEE--cCCCCEEEEEEc
Confidence 346799999987775 478999999865
No 47
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=39.41 E-value=2e+02 Score=30.43 Aligned_cols=80 Identities=21% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCC-CceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccC
Q 006351 487 FNA-SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRS 565 (649)
Q Consensus 487 F~~-~~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p 565 (649)
|.+ .-...-.+++|+|..+.+++|+|.=.-+.+ -..+||+.-.-... +
T Consensus 236 ~~~~~~~~~~~~itv~N~~~~~v~v~v~d~iPvs---------------------------~~~~I~V~~~~~~~----~ 284 (317)
T PF13598_consen 236 FGKSQRRTYEYTITVRNNKDEPVTVTVEDQIPVS---------------------------EDEDIKVELLEPPE----P 284 (317)
T ss_pred ccccEEEEEEEEEEEECCCCCCEEEEEEeCCCCC---------------------------CCceEEEEEcCCCC----C
Confidence 444 556788899999999999998887432221 11355543211100 0
Q ss_pred CcccccCceEEecccceeEEeCCCceEEEEeEEEEeec
Q 006351 566 SLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 603 (649)
Q Consensus 566 ~~~~~~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~~~p 603 (649)
... -=.|...-++.|+||++.++.+...+-.|
T Consensus 285 -~~~-----~~~g~~~W~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 285 -NED-----EKDGILEWKVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred -ccc-----CCCCEEEEEEEECCCCEEEEEEEEEEEcC
Confidence 000 12366677899999999999999888765
No 48
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=39.05 E-value=1.9e+02 Score=24.50 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=35.7
Q ss_pred EEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEECCCceEEE
Q 006351 39 DIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILV 118 (649)
Q Consensus 39 ~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~p~etk~v 118 (649)
.|.++||=.+++.++++.....+... .. +. ......+.++|.++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~--~v---------------~~----------------~~~~~~~~i~~~~~~~v 47 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQ--RV---------------GT----------------GGSLPPFTIPARSSTTV 47 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSS--EE---------------EE----------------EEECE-EEESSSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCE--EE---------------EC----------------ccccCCeEECCCCcEEE
Confidence 37889999999999999988765322 11 10 11237999999999988
Q ss_pred EEEEE
Q 006351 119 QLMVT 123 (649)
Q Consensus 119 ~L~v~ 123 (649)
.+.+.
T Consensus 48 ~~~v~ 52 (101)
T PF03168_consen 48 PVPVS 52 (101)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88654
No 49
>COG1470 Predicted membrane protein [Function unknown]
Probab=38.60 E-value=6.6e+02 Score=28.85 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=40.2
Q ss_pred eeeeEEECCCceEEEEEEEEecceE----EEEEEEEEEEEcceeeeeEeeeecccc
Q 006351 104 SEVDISLGGAETILVQLMVTPKVEG----ILKIVGVRWRLSGSLVGVYNFESNLVK 155 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~~G----~L~I~Gv~~~l~~~v~g~~~fe~~g~R 155 (649)
++..+.|.|.|+-.+.|++.|.+.| .+.|.|+.| +.-.+.+.+.+++..|-
T Consensus 35 ~i~~~~lr~~e~~~l~~~v~~~~~g~~~v~f~i~~~~~-~~v~v~~~~~l~it~p~ 89 (513)
T COG1470 35 EIKGLKLRPKESVELQFKVLPGKAGSYSVKFSIEGVPY-WTVNVYTSEPLQITLPI 89 (513)
T ss_pred EeeeeEcCCCcceEEEEEEecCCCCcEEEEEEECCcee-EEEEEEecccEEEeccc
Confidence 4578999999999999999999988 677888888 55445557777666554
No 50
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=38.24 E-value=4.8e+02 Score=27.13 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=104.5
Q ss_pred cceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 006351 27 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 106 (649)
Q Consensus 27 ~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 106 (649)
...+.+||.|..-|-+.|.-..+ +.++++-++......... -.+.+..... ..
T Consensus 7 fG~iylGEtF~~~l~~~N~s~~~--v~~v~ikvemqT~s~~~r-------~~L~~~~~~~------------------~~ 59 (249)
T PF06159_consen 7 FGSIYLGETFSCYLSVNNDSNKP--VRNVRIKVEMQTPSQSLR-------LPLSDNENSD------------------SP 59 (249)
T ss_pred cCCEeecCCEEEEEEeecCCCCc--eEEeEEEEEEeCCCCCcc-------ccCCCCcccc------------------cc
Confidence 45678999999999999965555 478888887776643100 0000000000 01
Q ss_pred eEEECCCceEEEEEEEEecceEEEEE-EEEEEEEcceeeeeEeeeecccccccccccccccCCCCCceEEEEecCCCeEE
Q 006351 107 DISLGGAETILVQLMVTPKVEGILKI-VGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLE 185 (649)
Q Consensus 107 ~i~L~p~etk~v~L~v~P~~~G~L~I-~Gv~~~l~~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL~~~V~~~~P~L~ 185 (649)
.-.|.|+++....+.--=++.|.-.+ ..|.|.-.....|+ + ....+--+|.|.+|+ -+.
T Consensus 60 ~~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~g~--------~-----------~tfRK~ykF~v~~PL-~Vk 119 (249)
T PF06159_consen 60 VASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETSGE--------R-----------RTFRKFYKFQVLNPL-SVK 119 (249)
T ss_pred ccccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccCCc--------c-----------ceEeeeeEEeCCCCc-EEE
Confidence 23588998888888888888886544 34445544111111 0 001123446665443 222
Q ss_pred EEEccCCc--ceecceEEEEEEEEEeccccccc--ceEEe-ee-ee--ecC--CCCCCCCeeee---cCCCcccCCCCeE
Q 006351 186 GLIHPLPE--RAYAGDLRHLVLELKNQSDFSVK--KMTNA-EQ-SV--AGG--NFNKMPQAVFS---FPEGISIQGETPL 252 (649)
Q Consensus 186 v~~~~lP~--~ll~GEi~~~~l~L~N~g~~pv~--~l~v~-~P-~~--~~g--~~~~~~~~vf~---lp~~~~L~pGes~ 252 (649)
-++..++. ..-..+..-+.+.|+|++..|+- .+.+- .+ |- .+. +.......... .++...|+||+++
T Consensus 120 tK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~ 199 (249)
T PF06159_consen 120 TKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVR 199 (249)
T ss_pred EEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEE
Confidence 24555544 24566677788889999988854 55554 33 31 121 11111111110 1234579999999
Q ss_pred EEEEEEEec
Q 006351 253 LWPLWYRAA 261 (649)
Q Consensus 253 ~iplwlra~ 261 (649)
+.=+.|...
T Consensus 200 qylF~l~~~ 208 (249)
T PF06159_consen 200 QYLFCLTPK 208 (249)
T ss_pred EEEEEEEEC
Confidence 998888765
No 51
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.24 E-value=2.4e+02 Score=27.99 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=59.2
Q ss_pred cchhhhccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEE-EEecCCCccccCCCCCccccccccccccccccccc
Q 006351 16 QSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLIC-ELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEM 94 (649)
Q Consensus 16 ~~~~~~~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~-~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~ 94 (649)
+..+.=+|.-.....+.|+.+.|.+++.|-=+- ...||.|.= .|.++ +. .+
T Consensus 20 ~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~--~A~dV~l~D~~fp~~-~F-------------------------~l 71 (181)
T PF05753_consen 20 PARLLVSKQILNKYLVEGEDVTVTYTIYNVGSS--AAYDVKLTDDSFPPE-DF-------------------------EL 71 (181)
T ss_pred CcEEEEEEeeccccccCCcEEEEEEEEEECCCC--eEEEEEEECCCCCcc-cc-------------------------Ee
Confidence 334332334455677899999999999997655 455666651 01000 00 01
Q ss_pred CCCCCceeeeeeeEEECCCceEEEEEEEEecceEEEEEEEEEEEEc
Q 006351 95 NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS 140 (649)
Q Consensus 95 ~~~~~~f~~~~~~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~ 140 (649)
.+|... ..==.|.|++..+..+.+.|++.|.+.+.....+..
T Consensus 72 vsG~~s----~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 72 VSGSLS----ASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYR 113 (181)
T ss_pred ccCceE----EEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEE
Confidence 111111 112379999999999999999999999988776663
No 52
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=37.45 E-value=1.7e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=24.5
Q ss_pred EEcCceEEEEEEEeCCccCcEEeeeEEEEEEE
Q 006351 30 CVAGEPVKVDIEFKNPLQIPISISNISLICEL 61 (649)
Q Consensus 30 ~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f 61 (649)
+.+|++..+.|..++-..-++....-.+.++.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i 48 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTI 48 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEE
Confidence 48999999999999998887776544444444
No 53
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.05 E-value=65 Score=35.47 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=18.3
Q ss_pred eeEEECCCceEEEEEEEEecceEEEEEE
Q 006351 106 VDISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 106 ~~i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
.++.|..+.+..-.+.+..+++|..+|.
T Consensus 79 ~S~~le~G~~y~fki~lkar~pG~~hvh 106 (381)
T PF04744_consen 79 RSVSLELGGTYEFKIVLKARRPGTWHVH 106 (381)
T ss_dssp S-B---TT-EEEEEEEEEE-S-EEEEEE
T ss_pred ceEEeecCCeeeEEEEEecccCccccce
Confidence 5788888889999999999999998874
No 54
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=34.59 E-value=31 Score=25.86 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.0
Q ss_pred eEEEEeeceeeecCCcEEEEEE
Q 006351 596 MKVCLFSPGTYDLSNYALNWKL 617 (649)
Q Consensus 596 l~~~~~~pGvYdL~~~~~~~~~ 617 (649)
..+.|..||+|.|. ++...+.
T Consensus 5 ~nW~FT~PG~Y~l~-~~a~~~~ 25 (41)
T TIGR03769 5 ANWVFTKPGTYTLT-VQATATL 25 (41)
T ss_pred cceeeCCCeEEEEE-EEEEEEe
Confidence 56889999999987 5555544
No 55
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=1.4e+02 Score=29.87 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=44.3
Q ss_pred eEEEEEEEEEeccccccc-ceEEeee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec--CCCce--EEEEEE
Q 006351 199 DLRHLVLELKNQSDFSVK-KMTNAEQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA--VPGKI--SLSITI 272 (649)
Q Consensus 199 Ei~~~~l~L~N~g~~pv~-~l~v~~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~--~~G~~--~l~lLf 272 (649)
+.....++|+|....++. .++...| .+++ -|..+.|.||++.++.++.++. .+... .=+|++
T Consensus 25 ~~~~~~l~l~N~t~~~vaFKvktT~p~~y~V------------rP~~G~i~p~~t~~i~v~~q~~~~~P~d~~~r~kF~v 92 (218)
T KOG0439|consen 25 EQVKCSLTLKNPTKLRVAFKVKTTAPKLYCV------------RPNGGVIDPGSTVEIEVTHQPFEKSPPDFKSRHKFLI 92 (218)
T ss_pred ceEEEEEEEecCCCCceEEEEEcCCCCeEEE------------cCCcceECCCCcEEEEEEeccCccCchhhcccceEEE
Confidence 577899999999665543 2222244 3322 2445799999999999988883 23333 357777
Q ss_pred EEecCC
Q 006351 273 YYEMGD 278 (649)
Q Consensus 273 yYe~~~ 278 (649)
||-...
T Consensus 93 ~~~~~~ 98 (218)
T KOG0439|consen 93 QSLKAP 98 (218)
T ss_pred EEEecC
Confidence 775554
No 56
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=32.90 E-value=1.7e+02 Score=26.28 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=36.7
Q ss_pred ceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccCCcccc
Q 006351 491 FCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLES 570 (649)
Q Consensus 491 ~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 570 (649)
.-+=--+|.|.|.+..+..+.|......
T Consensus 30 ~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~---------------------------------------------------- 57 (118)
T PF11614_consen 30 SIRNQYTLKLTNKTNQPRTYTISVEGLP---------------------------------------------------- 57 (118)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEEEEES-S----------------------------------------------------
T ss_pred eEEEEEEEEEEECCCCCEEEEEEEecCC----------------------------------------------------
Confidence 3334568999999998888888875411
Q ss_pred cCceEEecccceeEEeCCCceEEEEeEEEEeece
Q 006351 571 VSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPG 604 (649)
Q Consensus 571 ~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~~~pG 604 (649)
.+.|.+ ....++|+||++..+++.+.+...-
T Consensus 58 --~~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 58 --GAELQG-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp --S-EE-E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred --CeEEEC-CCcceEECCCCEEEEEEEEEECHHH
Confidence 123545 6678899999999999998876554
No 57
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=31.51 E-value=3.9e+02 Score=28.27 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=63.8
Q ss_pred EEccCCcceecceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCC
Q 006351 187 LIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP 263 (649)
Q Consensus 187 ~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~ 263 (649)
...+.|..+..||-..+.+-+.|--..+..=.-.+ .. ....++.+......+.-+ ...|..|++.++++-+.....
T Consensus 179 ~a~~Ypt~l~~ge~~~v~vgI~NhE~~~~~Ytv~v~l~~~~~~~~~~~~~~~~~l~~~-~~~L~~n~t~~~~~~~~~~~~ 257 (287)
T PF07760_consen 179 KAGDYPTNLTSGEPGTVIVGIENHEGRPENYTVVVVLQNVTWNPNNYNVMESTVLDRP-IVTLADNETWEQPYKFTPFIT 257 (287)
T ss_pred ccccCCeeEEcCCcEEEEEEEEcCCCCcEEEEEEEEEeccccccccccccchhcccce-EEEeCCCCeEEEEEEEEEecC
Confidence 34578999999999999999999987765522222 11 111111111111122212 127888999999999998744
Q ss_pred -CceEEEEEEEEecCCCCccceEEEEEEEEE
Q 006351 264 -GKISLSITIYYEMGDVSSVIKYRLLRMHYN 293 (649)
Q Consensus 264 -G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~ 293 (649)
+...+-++.|.+.. +....||-+.+..+
T Consensus 258 ~~~~~l~~lLY~~~~--~~~~ayr~~~Lwv~ 286 (287)
T PF07760_consen 258 GENPRLEYLLYKGGV--NSENAYRSLHLWVN 286 (287)
T ss_pred CCceEEEEEEEcCCC--CcchheeEEEEEEE
Confidence 45577777777653 22345887665543
No 58
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=31.51 E-value=2.2e+02 Score=32.30 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCCCceEEEEecCCCeEEEE--EccCCcceecceEEEEEEEEEeccccccc-ceEEe-ee-eeecCCC----C-------
Q 006351 168 SPSNDLKFIVIKSLPKLEGL--IHPLPERAYAGDLRHLVLELKNQSDFSVK-KMTNA-EQ-SVAGGNF----N------- 231 (649)
Q Consensus 168 ~pd~rL~~~V~~~~P~L~v~--~~~lP~~ll~GEi~~~~l~L~N~g~~pv~-~l~v~-~P-~~~~g~~----~------- 231 (649)
...-.+++.|++..|..... ++..--+.=+|++....|+++|.+..|+. ++.-+ -- .+++.+. .
T Consensus 131 s~~l~I~I~~Tk~v~~~g~p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~~~~~~~~~~~~~~k 210 (438)
T PF04425_consen 131 SSPLEIEIYVTKDVGKPGKPPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVVDSKSPSSKKPRTVK 210 (438)
T ss_pred CCceEEEEEEeccCCCCCCCcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEcccccccccccHHHH
Confidence 33556777888888877761 11122257789999999999999998887 44444 33 4444321 0
Q ss_pred ----------------C---------------CCCeeeecCCCcccCCCCeEEEEEEEEecC
Q 006351 232 ----------------K---------------MPQAVFSFPEGISIQGETPLLWPLWYRAAV 262 (649)
Q Consensus 232 ----------------~---------------~~~~vf~lp~~~~L~pGes~~iplwlra~~ 262 (649)
+ .+...+.||....|+||.+..-+++++=|.
T Consensus 211 kFL~M~D~sASws~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~FkiP~ 272 (438)
T PF04425_consen 211 KFLRMFDFSASWSYANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKIPE 272 (438)
T ss_pred HHHHhhcceecccccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeCCc
Confidence 0 012356688889999999999999999884
No 59
>COG1572 Uncharacterized conserved protein [Function unknown]
Probab=29.46 E-value=1e+03 Score=28.29 Aligned_cols=189 Identities=17% Similarity=0.120 Sum_probs=102.3
Q ss_pred eeeEEECCCceEEEEEEEEecceEEEEEEEEEEEEcceeeeeEeeeecccccccccccccccCCCCCce--EEEEe-cCC
Q 006351 105 EVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL--KFIVI-KSL 181 (649)
Q Consensus 105 ~~~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL--~~~V~-~~~ 181 (649)
.+...|++.++..+.....|...|. ..-++++. +. +.+-...+..+... .+.+. ++.
T Consensus 341 ~~i~~l~sg~~~~~~~n~~~a~~~~--~~~l~v~~--------------d~----~~~v~esnennne~~~~~~~~~~~~ 400 (606)
T COG1572 341 TDIPSLSSGEESTISFNWPPACEGE--SVELRVVN--------------DK----DNTVAESNENNNEVTKVVDINPAEL 400 (606)
T ss_pred eeccccCCccccccccccceeeccc--eEEeeeec--------------cc----ccceecccccchhhhheeeeccCCc
Confidence 3577888999999999888888886 11111111 00 11111111122111 12222 222
Q ss_pred C--eEEEEEccC---CcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEE
Q 006351 182 P--KLEGLIHPL---PERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPL 256 (649)
Q Consensus 182 P--~L~v~~~~l---P~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~ipl 256 (649)
| .|++.+..- -.....+.-..++++++|.|.....++.+- +|--| .. ..+..+ ..|+||+++++-+
T Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~k~~~i~l~i~N~G~~~a~~~~v~--l~lnG--~~--~~~~~i---~~l~~~~s~e~~v 471 (606)
T COG1572 401 PILDLEVVATADAGSLTQESVNKALTITLNIKNLGEAYASGFQVD--LVLNG--TI--VTVDSI---PGLESGESREVVV 471 (606)
T ss_pred ccccceeeeeccccccceEeecceEEEEEEEEeccccccCCceEE--EEEcC--ce--eeeEec---ccCCCCCceEEEE
Confidence 2 333322110 023555566789999999999988887776 11111 00 011122 3688999998887
Q ss_pred EEEecCCCceEEEEEE-----EEecCCCCccceEEEEEEEEEEEEeeeeeEEEEEeecccccceEEEEEEEEeCC
Q 006351 257 WYRAAVPGKISLSITI-----YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQT 326 (649)
Q Consensus 257 wlra~~~G~~~l~lLf-----yYe~~~~~~~~~~R~~R~~~~i~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~ 326 (649)
-.--...|.|+|.+.. -+|+.+.+. -..|++-....-..++-+.+++. ......+-++.+.+.|.+
T Consensus 472 ~~~~~s~G~~~Ls~~~D~~n~v~E~NE~NN-~~s~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~tl~~~~~~ 542 (606)
T COG1572 472 NEVSTSGGSHTLSVVIDPDNDVAESNENNN-EFSRILTVNTPRPDKIILTVSAV---WIEGFGNSILTLRYRNKN 542 (606)
T ss_pred EEEecCCCceEEEEEeCCCCcchhhccCCC-cceEEEEecCcCcceeeeccCcc---cccccCcceEEEEEeccc
Confidence 6534488999999988 556555443 22466666655555555555553 223334555555555554
No 60
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.13 E-value=2.9e+02 Score=35.15 Aligned_cols=101 Identities=23% Similarity=0.196 Sum_probs=59.3
Q ss_pred cccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccc-----cCCC-----CCcc-cccccccccccccc
Q 006351 23 KFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEME-----SDSN-----SSTT-ELQNDEESKLLTTT 91 (649)
Q Consensus 23 ~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~-----s~~~-----~~~~-~~~~~~~~~~p~~~ 91 (649)
...-.+....|..-.+.++|.||=++||.|.=|-|..--.++ ... .... ..++ +........+|...
T Consensus 689 ~~l~FPaTalg~~~i~~iTL~NPs~vPV~lQ~iPL~lYpdpe--~lV~Lt~r~~~~ev~misltT~eFtlk~~sa~P~~~ 766 (1626)
T KOG3620|consen 689 PILPFPATALGQVQIQWITLTNPSQVPVLLQYIPLVLYPDPE--FLVRLTQRSLPHEVIMISLTTCEFTLKEVSALPEAY 766 (1626)
T ss_pred CCCCCchhhccceeEEEEEecCCCCCceEeeeeeecccCCHH--HHHHHHHhhccceeEEEeeeeeEEEeeccccCchhh
Confidence 355678888999999999999999999999988776421110 000 0000 0000 00111111223100
Q ss_pred cccCCCCCceeeeeeeEEECCCceEEEEEEEEecceE
Q 006351 92 GEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEG 128 (649)
Q Consensus 92 ~~~~~~~~~f~~~~~~i~L~p~etk~v~L~v~P~~~G 128 (649)
.+..+-+.|- +..+.|.|+|+++|++..+|..-+
T Consensus 767 -g~~~e~sR~~--iL~liLkPgekkrv~v~FtP~dy~ 800 (1626)
T KOG3620|consen 767 -GLNHEMSRYN--ILPLILKPGEKKRVPVTFTPQDYE 800 (1626)
T ss_pred -cccccccccc--cceeeecCccceeeeeeeeccCcc
Confidence 1111222222 579999999999999999998755
No 61
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=27.89 E-value=93 Score=27.84 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.0
Q ss_pred EecccceeEEeCCCceEEEEeEEEEee
Q 006351 576 WSGSSASSVRLQPMSTTDIAMKVCLFS 602 (649)
Q Consensus 576 w~G~~~~~~~l~p~e~~~v~l~~~~~~ 602 (649)
+.......++|+||++.+|.+.+-+-.
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 778888999999999999999888754
No 62
>PF15146 FANCAA: Fanconi anemia-associated
Probab=26.62 E-value=1.5e+02 Score=33.09 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=60.3
Q ss_pred CCceEEEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccc---eEEe-ee-eeecCCCCCCCCeeeecCCCc
Q 006351 170 SNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKK---MTNA-EQ-SVAGGNFNKMPQAVFSFPEGI 244 (649)
Q Consensus 170 d~rL~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~---l~v~-~P-~~~~g~~~~~~~~vf~lp~~~ 244 (649)
++.+.-.++..|=+| +.-..-.++..|.|.+.+.++. +++. .+ ...+......+...|.||-+
T Consensus 56 ~kpI~C~~tt~WSrl-----------l~qD~L~~tCvLeNsS~~sLe~GWtLCiqv~~~s~~~~~~~~~SattytfPv~- 123 (435)
T PF15146_consen 56 PKPISCTVTTSWSRL-----------LLQDSLTATCVLENSSDFSLERGWTLCIQVLSSSCALDTDSASSATTYTFPVD- 123 (435)
T ss_pred CCCceeEEechhhHH-----------HhhcceeeEEEEecCCCccccCCceEEEEeccCCCCcccCCCCCceeEEEEcc-
Confidence 444555555555443 5556667899999999999984 4443 44 22222222334457888755
Q ss_pred ccCCCCeEEEEEEEEecCCCceEE----EEEEEEec
Q 006351 245 SIQGETPLLWPLWYRAAVPGKISL----SITIYYEM 276 (649)
Q Consensus 245 ~L~pGes~~iplwlra~~~G~~~l----~lLfyYe~ 276 (649)
.|.||+++++.+=+...+.|..++ .+-++|.-
T Consensus 124 ~L~PG~~~EVtLPLg~~~~g~l~lPvtVsCaL~ySL 159 (435)
T PF15146_consen 124 NLGPGERREVTLPLGPAEDGKLDLPVTVSCALFYSL 159 (435)
T ss_pred cCCCCceeEEEEecCccccccccccEEEEEEeeeeH
Confidence 899999999988886666666554 44556644
No 63
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=26.49 E-value=7.1e+02 Score=25.48 Aligned_cols=80 Identities=8% Similarity=0.020 Sum_probs=53.8
Q ss_pred eecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeee-ecCCCcccCCCCeEEEEEEEEec--CCCceEEEEE
Q 006351 195 AYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVF-SFPEGISIQGETPLLWPLWYRAA--VPGKISLSIT 271 (649)
Q Consensus 195 ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf-~lp~~~~L~pGes~~iplwlra~--~~G~~~l~lL 271 (649)
+|.++-....+.|.|.|..| +++..++.-++........| ..|--..|+||+...+-+...+. ...+.++.+|
T Consensus 29 I~~~~~~~~si~i~N~~~~p----~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~~LP~DrEslf~l 104 (226)
T PRK15295 29 VFDGNNDESSINVENKDSKA----NLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGAPLPADRESMYWL 104 (226)
T ss_pred EEeCCCceeEEEEEeCCCCc----EEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCCCceEEEEE
Confidence 78899999999999999876 33322443333221112223 34446789999999999877764 3357778888
Q ss_pred EEEecCC
Q 006351 272 IYYEMGD 278 (649)
Q Consensus 272 fyYe~~~ 278 (649)
..++-+.
T Consensus 105 nv~~IP~ 111 (226)
T PRK15295 105 NIKGIPS 111 (226)
T ss_pred EEEEcCC
Confidence 8887664
No 64
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.98 E-value=1.4e+02 Score=27.03 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=35.6
Q ss_pred ceecceEEEEEEEEEeccccccc---ceEEe--eeeeecCCCCCCCCeeeecCC--CcccCCCCeEEEEEEEE
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVK---KMTNA--EQSVAGGNFNKMPQAVFSFPE--GISIQGETPLLWPLWYR 259 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~---~l~v~--~P~~~~g~~~~~~~~vf~lp~--~~~L~pGes~~iplwlr 259 (649)
.+..|. .+++|+++|.|..|+. ..... +|.+.|. .++.-..=++.|. ....+||+++++.|.=-
T Consensus 14 ~ln~gr-~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FD-R~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 14 TINEGR-KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFD-RELAFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred EeCCCC-cEEEEEEEeCCCcceEEccccchhhcCcceeec-HhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 445554 5689999999999863 11111 2323332 1111011112343 35788999999998643
No 65
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=25.66 E-value=1.2e+02 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.0
Q ss_pred eeeeEEECCCceEEEEEEEEecc
Q 006351 104 SEVDISLGGAETILVQLMVTPKV 126 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~ 126 (649)
....|+++|++++.|.+.+.|..
T Consensus 60 ~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 60 SPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp --EEEEE-TTEEEEEEEEEE--G
T ss_pred CCCeEEECCCCEEEEEEEEEehh
Confidence 45899999999999999999843
No 66
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=24.95 E-value=1.4e+02 Score=27.01 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=35.0
Q ss_pred ceecceEEEEEEEEEeccccccc---ceEEe--eeeeecCCCCCCCCeeeecCC--CcccCCCCeEEEEEEE
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVK---KMTNA--EQSVAGGNFNKMPQAVFSFPE--GISIQGETPLLWPLWY 258 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~---~l~v~--~P~~~~g~~~~~~~~vf~lp~--~~~L~pGes~~iplwl 258 (649)
.+..| ..+++|+++|.|..|+. ..... +|.+.|. .++.-..=++.|. ....+||+++++.|.=
T Consensus 14 ~lN~g-r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FD-R~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T cd00407 14 ELNAG-REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFD-REKAYGMRLDIPAGTAVRFEPGEEKEVELVP 83 (101)
T ss_pred EeCCC-CCEEEEEEEeCCCcceEEccccchhhcCcccccc-HHHcccceecccCCCeEEECCCCeEEEEEEE
Confidence 34444 55789999999999863 11111 2222332 1111111122343 3578899999999864
No 67
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=23.80 E-value=1.9e+02 Score=28.29 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=31.8
Q ss_pred ceEEEEEEEEEecccccccc----eEEe--eeeeecCCCC-C---CCCeeeec-CCC--cccCCCCeEEEEEEEEec
Q 006351 198 GDLRHLVLELKNQSDFSVKK----MTNA--EQSVAGGNFN-K---MPQAVFSF-PEG--ISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 198 GEi~~~~l~L~N~g~~pv~~----l~v~--~P~~~~g~~~-~---~~~~vf~l-p~~--~~L~pGes~~iplwlra~ 261 (649)
|.-.+..|+|+|.|..++.. |+.- ++.....+.. + -....|.+ |.+ .-|+||++++|++.-...
T Consensus 29 ~~c~~~~ltl~n~~~~~~~~~dW~IYf~~ir~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~w 105 (164)
T PF03173_consen 29 ASCFRAELTLTNPGDAPLPKSDWAIYFSSIRPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEYW 105 (164)
T ss_dssp G-EEEEEEEEEE-SS-B------EEEEE-SS-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES-
T ss_pred ccceEEEEEEEcCCCccCCCCCeEEEEecceeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEcccc
Confidence 66778999999999888765 4444 3432222111 0 01223432 322 369999999999987664
No 68
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=23.58 E-value=1.5e+02 Score=32.65 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=38.5
Q ss_pred ecceEEEEEEEEEeccccccc-------ceEEeee--eeecCCCCCCCCe----eeecCCCcccCCCCeEEEEEEEEec
Q 006351 196 YAGDLRHLVLELKNQSDFSVK-------KMTNAEQ--SVAGGNFNKMPQA----VFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 196 l~GEi~~~~l~L~N~g~~pv~-------~l~v~~P--~~~~g~~~~~~~~----vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
.-|-.-+++++++|.|..|++ ++|..+| ..... ...... =+.+.++..|+|||++++.+-.+..
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~--~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLD--PDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccC--CCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 346677899999999998864 2222222 11111 000000 1223346689999999999999854
No 69
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=22.62 E-value=4.8e+02 Score=24.37 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=42.8
Q ss_pred cceEEEEEEEEEecccccccceEEeeeeeecCCCCC--CCCeeee-----cC---CCcccCCCCeEEEEEEEEecCCCce
Q 006351 197 AGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNK--MPQAVFS-----FP---EGISIQGETPLLWPLWYRAAVPGKI 266 (649)
Q Consensus 197 ~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~--~~~~vf~-----lp---~~~~L~pGes~~iplwlra~~~G~~ 266 (649)
.++...+..+|.|.+..+..--.|. +++-|... -.+.+|. .+ ....|+||++..+.+.+..+.+...
T Consensus 66 ~~~~l~v~g~i~N~~~~~~~~P~l~---l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~~~a~ 142 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRADFPQALPALE---LSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPPPRAA 142 (149)
T ss_pred CCCEEEEEEEEEeCCCCcccCceEE---EEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCCCccc
Confidence 4778889999999997766533333 22211110 0112221 11 2567999999999999987755544
Q ss_pred EEEEE
Q 006351 267 SLSIT 271 (649)
Q Consensus 267 ~l~lL 271 (649)
.+++-
T Consensus 143 ~~~v~ 147 (149)
T PF11906_consen 143 GYRVE 147 (149)
T ss_pred eEEEE
Confidence 44443
No 70
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=22.60 E-value=4e+02 Score=23.60 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=24.3
Q ss_pred CCc-ceecceEEEEEEEEEecccccccceEEe
Q 006351 191 LPE-RAYAGDLRHLVLELKNQSDFSVKKMTNA 221 (649)
Q Consensus 191 lP~-~ll~GEi~~~~l~L~N~g~~pv~~l~v~ 221 (649)
+|. ....||...+.+++.|.+...+++|.+.
T Consensus 11 i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~ 42 (136)
T PF02752_consen 11 IPRTAYVPGETIPVNVEIDNQSKKKIKKIKVS 42 (136)
T ss_dssp ES-SEEETT--EEEEEEEEE-SSSEEEEEEEE
T ss_pred ECCCEECCCCEEEEEEEEEECCCCEEEEEEEE
Confidence 344 4789999999999999999999999999
No 71
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=22.58 E-value=3.3e+02 Score=27.95 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=48.7
Q ss_pred cceecceEEEEEEEEEecc-cccccceEEe-ee-eeec-CCCCCCCCee---eecCCCcccCCCCeEEEEEEEEec
Q 006351 193 ERAYAGDLRHLVLELKNQS-DFSVKKMTNA-EQ-SVAG-GNFNKMPQAV---FSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 193 ~~ll~GEi~~~~l~L~N~g-~~pv~~l~v~-~P-~~~~-g~~~~~~~~v---f~lp~~~~L~pGes~~iplwlra~ 261 (649)
..+..||..+..+.|+--. ...+..|++. .- +-.- ++++...... +.+.+...|+|||.+++|+-++-|
T Consensus 22 ~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP 97 (218)
T PF07070_consen 22 PSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLP 97 (218)
T ss_pred CCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECC
Confidence 3578899999999999876 6679999988 44 3222 2222111222 235567899999999999999977
No 72
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=22.35 E-value=5.1e+02 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=17.8
Q ss_pred EEEEEEEEeCCCccEeEEEEccC
Q 006351 494 VNLKMTIYNSSDAAMFVRVNTFD 516 (649)
Q Consensus 494 vpV~l~i~N~s~~~v~v~i~~~~ 516 (649)
.-..|.|.|.+++++-++|.+..
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~ 42 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTN 42 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-
T ss_pred EEEEEEEECCCCCcEEEEEEcCC
Confidence 45577999999999999999754
No 73
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=22.20 E-value=3.9e+02 Score=25.16 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=43.7
Q ss_pred eecceEEEEEEEEEecccccccceEEeeeeeec----CCCC---CCCCeeee---cCCCcccCCCCeEEEEEEEEec-CC
Q 006351 195 AYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAG----GNFN---KMPQAVFS---FPEGISIQGETPLLWPLWYRAA-VP 263 (649)
Q Consensus 195 ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~----g~~~---~~~~~vf~---lp~~~~L~pGes~~iplwlra~-~~ 263 (649)
+.-+|..-+..+++|.|..+++++.+..-++.- ++.. .....-|. .+-...|.|||+++..+-+-.+ ..
T Consensus 58 l~~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~~p~~ 137 (149)
T PF09624_consen 58 LQYSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPYPPYF 137 (149)
T ss_pred eeeccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecCCccC
Confidence 556888899999999999999999888222221 1100 00011111 1112239999999887776544 44
Q ss_pred CceEE
Q 006351 264 GKISL 268 (649)
Q Consensus 264 G~~~l 268 (649)
|...+
T Consensus 138 ~~~~~ 142 (149)
T PF09624_consen 138 GNYNI 142 (149)
T ss_pred CCceE
Confidence 44443
No 74
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=21.28 E-value=7.8e+02 Score=25.67 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=55.1
Q ss_pred Ccc-eecceEEEEEEEEEecccccccceEEeeeeeecCCCCCC----C-CeeeecCCCcccCCCCeEEEEEEEEe--c-C
Q 006351 192 PER-AYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKM----P-QAVFSFPEGISIQGETPLLWPLWYRA--A-V 262 (649)
Q Consensus 192 P~~-ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~----~-~~vf~lp~~~~L~pGes~~iplwlra--~-~ 262 (649)
+++ +|.+.-+...|.|.|.|..| +++..++.-|+.... . ...+..|--..|+||+...+-|-..+ . .
T Consensus 34 ~TRviy~~~~~~~sl~l~N~~~~p----~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~~~lP 109 (253)
T PRK15249 34 GSRIIYPSTASSVDVQLKNNDAIP----YIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTKKLP 109 (253)
T ss_pred ceEEEEeCCCcceeEEEEcCCCCc----EEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCCCCCC
Confidence 443 78888899999999999765 333223332322211 1 11233454678999999999988775 3 4
Q ss_pred CCceEEEEEEEEecCC
Q 006351 263 PGKISLSITIYYEMGD 278 (649)
Q Consensus 263 ~G~~~l~lLfyYe~~~ 278 (649)
.++.++.+|..++-+.
T Consensus 110 ~DRESlf~lnv~eIP~ 125 (253)
T PRK15249 110 QDRESVFWFNVLQVPP 125 (253)
T ss_pred CCceEEEEEEeeecCC
Confidence 4678889998888664
No 75
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=21.15 E-value=3.6e+02 Score=25.39 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=45.9
Q ss_pred EEEEEEeCCccC-cEEeeeEEEEE-EEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEECCCc
Q 006351 37 KVDIEFKNPLQI-PISISNISLIC-ELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAE 114 (649)
Q Consensus 37 ~V~V~l~NPL~i-pl~l~~I~L~~-~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~p~e 114 (649)
+|.|.+.|=+.- +|.+.|..|.| +|-..++.. + +..+. ....+++.|.+
T Consensus 3 wv~i~I~n~~~~~~l~i~Na~L~~GKfy~~~~kd------------~--eis~~---------------~v~~~~i~~~~ 53 (131)
T PF06355_consen 3 WVSIHIVNNLGSGDLKIKNAQLSWGKFYRDGNKD------------D--EISPD---------------DVNGIVIPPGG 53 (131)
T ss_pred EEEEEEEeCCCCccEEEEccEeccCccccCCCcC------------C--EeCcc---------------ccCceEecCCC
Confidence 688999999988 99999999999 654332211 0 01110 23688889988
Q ss_pred eEEEEEEEE---ec-ceEEEEEE
Q 006351 115 TILVQLMVT---PK-VEGILKIV 133 (649)
Q Consensus 115 tk~v~L~v~---P~-~~G~L~I~ 133 (649)
...+.-... |. .+|.|-+.
T Consensus 54 ~~~i~scGr~~~~sGTEGsfdl~ 76 (131)
T PF06355_consen 54 SYSICSCGREGSPSGTEGSFDLY 76 (131)
T ss_pred eEEEEEecCCCCCcCceEEEEEE
Confidence 888877776 33 46877765
No 76
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=21.06 E-value=90 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=19.7
Q ss_pred eeEEECCCceEEEEEEEEecceEEEEE
Q 006351 106 VDISLGGAETILVQLMVTPKVEGILKI 132 (649)
Q Consensus 106 ~~i~L~p~etk~v~L~v~P~~~G~L~I 132 (649)
..+.|.|+|+++|.|.+.|+.=+...-
T Consensus 25 ~rv~l~pGes~~v~~~l~~~~l~~~d~ 51 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPEDLAYWDE 51 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHHHHEEEET
T ss_pred EEEEECCCCEEEEEEEECHHHEeeEcC
Confidence 578899999999999999975444433
No 77
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=1.6e+02 Score=27.82 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=34.2
Q ss_pred CCCCceEEEEecCCCeEEEEEccCCcceecceEEEEEEEEE
Q 006351 168 SPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELK 208 (649)
Q Consensus 168 ~pd~rL~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~ 208 (649)
.|..-+..+|...+-.-.+.+.+.|..||+||..++.+++-
T Consensus 30 ~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~ 70 (161)
T KOG0427|consen 30 NPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFP 70 (161)
T ss_pred CCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecC
Confidence 34455667788888888899999999999999999888763
No 78
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=20.14 E-value=2e+02 Score=36.83 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred eEEecccceeEEeCCCceEEEEeEEEEeeceeeecCCcEEEEEEEeeccCCCCCccccccCCCCCCceEEEEeec
Q 006351 574 FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQA 648 (649)
Q Consensus 574 f~w~G~~~~~~~l~p~e~~~v~l~~~~~~pGvYdL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 648 (649)
+.|.... .|+||++.++++. +.-.+|.+++....+..+-+...++.+..=+|+ --.|+.|||.++
T Consensus 857 ~~i~~~~----~I~Pg~~~~~~~~-~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rq-----l~ipl~vtV~~s 921 (1185)
T PF08626_consen 857 FRILNKP----PIPPGESATFTVE-VDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQ-----LSIPLTVTVNPS 921 (1185)
T ss_pred eeecccC----ccCCCCEEEEEEE-ecCcccccceeeeeEEEEecccCCCCCCCeeEE-----EEEEEEEEEece
Confidence 5665544 9999999999999 345688889998888877754443332222222 235677777654
Done!