Query 006351
Match_columns 649
No_of_seqs 142 out of 176
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 22:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsv_A Uncharacterized protein 96.0 0.34 1.2E-05 47.7 18.0 180 21-275 6-205 (220)
2 3idu_A Uncharacterized protein 95.9 0.024 8.3E-07 51.6 8.3 91 175-276 10-100 (127)
3 1vjj_A Protein-glutamine gluta 94.6 3.1 0.00011 47.6 22.0 132 104-272 536-674 (692)
4 2xzz_A Protein-glutamine gamma 94.3 0.031 1.1E-06 49.0 3.9 72 25-133 11-82 (102)
5 2q3z_A Transglutaminase 2; tra 94.1 3.3 0.00011 47.5 20.9 131 104-272 528-668 (687)
6 1g0d_A Protein-glutamine gamma 93.9 4.3 0.00015 46.5 21.2 128 104-273 526-666 (695)
7 1ex0_A Coagulation factor XIII 93.3 3 0.0001 48.0 18.7 127 104-273 571-710 (731)
8 2l0d_A Cell surface protein; s 92.5 0.71 2.4E-05 41.1 9.8 86 181-276 2-88 (114)
9 1g0d_A Protein-glutamine gamma 92.2 0.52 1.8E-05 53.9 10.5 91 24-152 589-682 (695)
10 1ex0_A Coagulation factor XIII 91.0 1.1 3.6E-05 51.7 11.4 91 25-152 635-726 (731)
11 2q3z_A Transglutaminase 2; tra 90.1 0.42 1.4E-05 54.8 7.2 89 26-151 593-684 (687)
12 1vjj_A Protein-glutamine gluta 88.7 1 3.5E-05 51.6 8.9 92 24-151 598-690 (692)
13 2e6j_A Hydin protein; PAPD, st 87.1 0.63 2.2E-05 40.3 4.8 76 194-277 21-97 (112)
14 2ys4_A Hydrocephalus-inducing 87.1 0.69 2.4E-05 41.0 5.1 71 194-277 36-107 (122)
15 3isy_A Bsupi, intracellular pr 85.8 8 0.00027 34.6 11.3 77 32-135 16-100 (120)
16 2e6j_A Hydin protein; PAPD, st 84.1 2.5 8.4E-05 36.4 7.1 84 21-141 13-96 (112)
17 2xzz_A Protein-glutamine gamma 76.8 14 0.00048 31.9 9.3 79 181-273 5-86 (102)
18 3idu_A Uncharacterized protein 76.1 22 0.00074 32.0 10.7 68 29-135 28-95 (127)
19 2ys4_A Hydrocephalus-inducing 73.1 15 0.0005 32.3 8.7 65 24-129 31-95 (122)
20 1row_A SSP-19, MSP-domain prot 71.7 9 0.00031 33.6 6.8 62 202-278 18-82 (109)
21 3but_A Uncharacterized protein 71.1 15 0.00051 33.4 8.4 27 35-61 19-45 (136)
22 2kut_A Uncharacterized protein 70.4 10 0.00034 34.1 6.9 82 191-276 8-96 (122)
23 3hrz_B Cobra venom factor; ser 68.9 24 0.00082 35.2 10.2 74 28-133 90-163 (252)
24 1m1s_A WR4; structural genomic 67.9 10 0.00035 33.7 6.4 61 202-277 26-89 (116)
25 3ugu_A S-arrestin; arrestin fo 66.4 24 0.00082 37.5 9.9 67 194-261 223-293 (380)
26 3isy_A Bsupi, intracellular pr 65.4 11 0.00039 33.6 6.2 74 493-609 19-98 (120)
27 3hrz_B Cobra venom factor; ser 61.3 43 0.0015 33.4 10.4 79 190-274 87-168 (252)
28 1so9_A Cytochrome C oxidase as 57.0 14 0.00048 34.8 5.4 76 176-259 40-121 (164)
29 3qbt_B Inositol polyphosphate 56.7 18 0.00062 32.8 6.1 77 179-260 22-100 (140)
30 2qsv_A Uncharacterized protein 54.5 1.5E+02 0.0052 28.4 19.2 155 195-375 15-186 (220)
31 1wic_A Hypothetical protein ri 51.9 10 0.00035 35.1 3.7 64 198-276 34-102 (152)
32 1z9l_A Vesicle-associated memb 50.3 70 0.0024 28.2 8.9 67 198-277 26-98 (128)
33 2hr0_B Complement C3 alpha' ch 43.4 3.1E+02 0.011 32.1 15.5 78 190-274 86-168 (915)
34 1yew_A Particulate methane mon 41.5 40 0.0014 35.5 6.4 28 106-133 80-107 (382)
35 4fxk_B Complement C4-A alpha c 39.7 63 0.0022 37.2 8.5 75 28-136 162-236 (767)
36 2cri_A Vesicle-associated memb 38.9 24 0.00084 32.2 4.0 51 198-261 30-83 (147)
37 3qbt_B Inositol polyphosphate 38.4 59 0.002 29.3 6.5 27 576-602 76-102 (140)
38 1yyc_A LEA protein, putative l 37.0 41 0.0014 31.8 5.3 59 33-124 61-119 (174)
39 3rfr_A PMOB; membrane, oxidore 35.5 52 0.0018 35.1 6.2 28 106-133 108-135 (419)
40 1msp_A MSP, major sperm protei 33.2 48 0.0016 29.4 4.8 67 200-278 26-97 (126)
41 3prx_B Cobra venom factor; imm 31.3 1.5E+02 0.0051 37.5 10.5 74 28-133 822-895 (1642)
42 2hr0_B Complement C3 alpha' ch 31.1 1.9E+02 0.0065 34.1 10.9 74 28-133 89-163 (915)
43 3hn9_A Lamin-B1; structural ge 29.6 44 0.0015 29.7 4.0 49 204-261 26-76 (123)
44 1ifr_A Lamin A/C; immunoglobul 29.4 66 0.0023 28.5 5.1 54 196-261 16-71 (121)
45 2lll_A Lamin-B2; immunoglobuli 29.4 57 0.0019 29.8 4.7 54 196-261 31-86 (139)
46 1xo8_A AT1G01470; structural g 28.9 52 0.0018 30.2 4.4 57 35-124 40-96 (151)
47 3jt0_A Lamin-B1; structural ge 28.9 45 0.0016 30.6 4.0 49 204-261 39-89 (144)
48 2r39_A FIXG-related protein; s 27.2 2.2E+02 0.0075 24.5 8.1 56 490-601 29-84 (118)
49 4acq_A Alpha-2-macroglobulin; 26.9 1.5E+02 0.0051 37.0 9.3 71 29-133 778-848 (1451)
50 4ay0_A Chaperone protein CAF1M 25.4 1.8E+02 0.006 28.3 7.8 80 195-278 22-104 (218)
51 1suj_A CONE arrestin; sensory 25.3 1.5E+02 0.005 31.7 7.7 66 194-260 204-273 (392)
52 3qis_A Inositol polyphosphate 23.9 1.1E+02 0.0038 32.0 6.5 30 576-605 79-108 (366)
53 1ufg_A Lamin A, nuclear lamin; 23.9 81 0.0028 29.2 4.7 54 196-261 47-102 (151)
54 3qis_A Inositol polyphosphate 23.8 1E+02 0.0035 32.3 6.1 76 179-262 25-105 (366)
55 4fxk_B Complement C4-A alpha c 22.7 2.7E+02 0.0092 31.8 10.0 77 190-274 159-238 (767)
56 2pn5_A TEP1R, thioester-contai 22.4 9.5E+02 0.032 29.2 15.3 79 190-273 671-754 (1325)
57 4acq_A Alpha-2-macroglobulin; 22.0 3.3E+02 0.011 33.9 11.1 77 190-274 774-853 (1451)
58 2b39_A C3; thioester, immune d 21.8 3.2E+02 0.011 34.4 11.1 73 30-133 838-910 (1661)
59 3zy7_A AP-1 complex subunit ga 20.7 3.8E+02 0.013 23.4 8.4 70 200-278 30-104 (122)
60 3es6_B Prolactin-inducible pro 20.5 4.3E+02 0.015 23.1 9.6 73 28-138 16-88 (118)
No 1
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.98 E-value=0.34 Score=47.71 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=111.0
Q ss_pred hccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCc
Q 006351 21 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSS 100 (649)
Q Consensus 21 ~~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 100 (649)
+...-++..+.+|++....+.++|.=+-||.++.++| +. ..
T Consensus 6 ~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-----p~--~~-------------------------------- 46 (220)
T 2qsv_A 6 SNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-----PS--FV-------------------------------- 46 (220)
T ss_dssp SCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-----CT--TE--------------------------------
T ss_pred ecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-----CC--ce--------------------------------
Confidence 3456778888999999999999999999999998865 11 01
Q ss_pred eeeeeeeEEECCCceEEEEEEEEecce---EEEEEEEEEEEEc----ceeeeeEeeeecccccccccccccccCCCCCce
Q 006351 101 FTLSEVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (649)
Q Consensus 101 f~~~~~~i~L~p~etk~v~L~v~P~~~---G~L~I~Gv~~~l~----~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL 173 (649)
......-.|.|+++-.|.++.-++.- |..+= -+..... +... ...+.+.
T Consensus 47 -~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~-~i~v~~~~~~~~~~~-~~~i~v~--------------------- 102 (220)
T 2qsv_A 47 -SLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDE-PLVLEVTSPETGKKA-VDSVMVS--------------------- 102 (220)
T ss_dssp -ECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEE-EEEEEEECTTTCCEE-EEEEEEE---------------------
T ss_pred -EeeeCcceeCCCCceEEEEEEcchhcccCCceee-EEEEEEEcCCCCccc-ccEEEEE---------------------
Confidence 00124677889998888888887764 43221 0111111 1111 1122221
Q ss_pred EEEEec--------CCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcc
Q 006351 174 KFIVIK--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 245 (649)
Q Consensus 174 ~~~V~~--------~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~ 245 (649)
..+.+ .+|.+++. ..+.-.-+.|+.....++|+|.|..||.=-.+.. ++|+ .+..++ ...
T Consensus 103 -g~v~p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~---scgc------t~~~~~-~~~ 170 (220)
T 2qsv_A 103 -LPLVDNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTT---RNPA------LTAVPD-RTE 170 (220)
T ss_dssp -EEECCCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEE---CSTT------EEEEES-CSE
T ss_pred -EEEcccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEe---CCCC------EeeecC-Ccc
Confidence 22222 35666554 3333332238999999999999999876333330 1110 122232 358
Q ss_pred cCCCCeEEEEEEEEecCC-Cc----eEEEEEEEEe
Q 006351 246 IQGETPLLWPLWYRAAVP-GK----ISLSITIYYE 275 (649)
Q Consensus 246 L~pGes~~iplwlra~~~-G~----~~l~lLfyYe 275 (649)
|+||++.++.+.+.+... |. ..-.+.+|-.
T Consensus 171 i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N 205 (220)
T 2qsv_A 171 IKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN 205 (220)
T ss_dssp ECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred CCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence 999999999999998744 77 6666666553
No 2
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=95.88 E-value=0.024 Score=51.63 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=69.2
Q ss_pred EEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEE
Q 006351 175 FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLW 254 (649)
Q Consensus 175 ~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~i 254 (649)
+.+..++|-|.+.+. .|..+..|+...+.++++|.|..++.+..+. +..++.. +-.. ...|++|++.++
T Consensus 10 ~~~~~~~pDL~V~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~---lyvng~~-----v~t~--~v~La~G~s~tv 78 (127)
T 3idu_A 10 LATTFEFPDLTVEIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVR---VYINGTL-----YKNW--TVSLGPKEEKVL 78 (127)
T ss_dssp C--CCSSCCEEEEEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEE---EEETTEE-----EEEE--EEEECTTCEEEE
T ss_pred EeeeccCCCeEEEec-CCCcccCCCEEEEEEEEEECCCCccCCcEEE---EEECCEE-----EeeE--EeccCCCCeEEE
Confidence 345689999999665 6999999999999999999999999988887 2233211 1111 125999999999
Q ss_pred EEEEEecCCCceEEEEEEEEec
Q 006351 255 PLWYRAAVPGKISLSITIYYEM 276 (649)
Q Consensus 255 plwlra~~~G~~~l~lLfyYe~ 276 (649)
.+-......|.+.|+..+-++.
T Consensus 79 ~f~~~~~~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 79 TFNWTPTQEGMYRINATVDEEN 100 (127)
T ss_dssp EEEECCSSCEEEEEEEEESTTC
T ss_pred EEEEEcCCCcEEEEEEEEcCCC
Confidence 9988755889999988886654
No 3
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=94.56 E-value=3.1 Score=47.65 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=86.2
Q ss_pred eeeeEEECCCceEEEEEEEEecc-------eEEEEEEEEEEEEcceeeeeEeeeecccccccccccccccCCCCCceEEE
Q 006351 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFI 176 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~-------~G~L~I~Gv~~~l~~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL~~~ 176 (649)
...+++|+|.|++.+.+.+.+.. .+.|+|..+ .++... .+.|.- -.
T Consensus 536 ~~~~v~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et---~~~~~~-----------------------~d 588 (692)
T 1vjj_A 536 DSATMSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAV-CKVPDE---SEVVVE-----------------------RD 588 (692)
T ss_dssp EEEEEEECTTCEEEEEEEECHHHHHTTCCTTCEEEEEEE-EECTTS---CCEEEE-----------------------EE
T ss_pred eeEEEEECCCceEEEEEEECHHHHhhhcccCCeEEEEEE-EEECCC---ceEEEE-----------------------EE
Confidence 34699999999999999998653 356666533 111110 001111 11
Q ss_pred EecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEE
Q 006351 177 VIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPL 256 (649)
Q Consensus 177 V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~ipl 256 (649)
+.=..|-|.+.+ +.....|+-..+.++|+|.=..||+|..+. --|..-...+..+.+ ..|.||++.++.+
T Consensus 589 i~l~~P~l~I~v---~g~~~v~~~l~v~v~f~NPL~~~L~~c~~~----vEG~GL~~~~~~~~~---~~v~pg~~~~~~~ 658 (692)
T 1vjj_A 589 IILDNPTLTLEV---LNEARVRKPVNVQMLFSNPLDEPVRDCVLM----VEGSGLLLGNLKIDV---PTLGPKERSRVRF 658 (692)
T ss_dssp EECBCCCEEEEE---CSCCBTTSCEEEEEEEECCSSSCBCSEEEE----EECTTTSSSCEEEEE---CCBCTTCEEEEEE
T ss_pred EEEcCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEE----EECCCCCCCceEEEc---CccCCCCEEEEEE
Confidence 122345566665 445567999999999999999999998766 111111112344555 3699999999999
Q ss_pred EEEecCCCceEEEEEE
Q 006351 257 WYRAAVPGKISLSITI 272 (649)
Q Consensus 257 wlra~~~G~~~l~lLf 272 (649)
-+.....|.+.|-.-|
T Consensus 659 ~~~P~~~G~r~L~a~f 674 (692)
T 1vjj_A 659 DILPSRSGTKQLLADF 674 (692)
T ss_dssp EECCCSCEEEEEEEEE
T ss_pred EEEeccccceEEEEEE
Confidence 9999999988754444
No 4
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=94.32 E-value=0.031 Score=48.98 Aligned_cols=72 Identities=24% Similarity=0.352 Sum_probs=48.4
Q ss_pred cccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 006351 25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (649)
Q Consensus 25 ~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 104 (649)
+-...+++|+++.++|.|+|||.++|. |..|..+ .. ... . + ..
T Consensus 11 ~v~g~~~v~~~l~v~vsf~NPL~~~L~--~c~~~vE--G~--GL~-----------~------~--------------~~ 53 (102)
T 2xzz_A 11 TLLGAAVVGQECEVQIVFKNPLPVTLT--NVVFRLE--GS--GLQ-----------R------P--------------KI 53 (102)
T ss_dssp EESSCCCSSSCEEEEEEEECCSSSCBC--SEEEEEE--ET--TTE-----------E------E--------------EE
T ss_pred EECCCcccCCeEEEEEEEECCCCCccc--CEEEEEE--CC--CCC-----------c------c--------------eE
Confidence 334456899999999999999988765 4444332 11 110 0 0 00
Q ss_pred eeeEEECCCceEEEEEEEEecceEEEEEE
Q 006351 105 EVDISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 105 ~~~i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
..-=.++|+++-.+++.++|.+.|.=++.
T Consensus 54 ~~~~~v~pg~~~~~~~~~~P~~~G~~~L~ 82 (102)
T 2xzz_A 54 LNVGDIGGNETVTLRQSFVPVRPGPRQLI 82 (102)
T ss_dssp EEECCBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred EEcCcCCCCCEEEEEEEEecCcccceEEE
Confidence 11223899999999999999999976653
No 5
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=94.10 E-value=3.3 Score=47.46 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=85.9
Q ss_pred eeeeEEECCCceEEEEEEEEecc-------eEEEEEEEEEEEEcc---eeeeeEeeeecccccccccccccccCCCCCce
Q 006351 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~-------~G~L~I~Gv~~~l~~---~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL 173 (649)
...+++|.|.|++.+.+.+.+.. .+.|++..+ .++.. .+....+|.+
T Consensus 528 ~~~~~~l~p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~l---------------------- 584 (687)
T 2q3z_A 528 YLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRAL-LVEPVINSYLLAERDLYL---------------------- 584 (687)
T ss_dssp EEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EEETTTTEEEEEEEEEEC----------------------
T ss_pred eeeEEEECCCceEEEEEEECHHHHhhhccCCCEEEEEEE-EEECCCCeEEEEEEEEEE----------------------
Confidence 34689999999999999998653 356666533 22221 1122222222
Q ss_pred EEEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEE
Q 006351 174 KFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLL 253 (649)
Q Consensus 174 ~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~ 253 (649)
..|-|.+.+ +.....|+-..+.++|+|.=..||+|..+. --|..-...+..+.++ ..|.||++.+
T Consensus 585 ------~~P~l~I~v---~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~----vEG~GL~~~~~~~~~~--~~v~pg~~~~ 649 (687)
T 2q3z_A 585 ------ENPEIKIRI---LGEPKQKRKLVAEVSLQNPLPVALEGCTFT----VEGAGLTEEQKTVEIP--DPVEAGEEVK 649 (687)
T ss_dssp ------BCCCCEEEE---ESCCSSSSCEEEEEEEECCSSSCBCSEEEE----EECTTTCSSCEEEEEC--SCBCTTCEEE
T ss_pred ------eCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEE----EECCCCCCCceEEecC--CCcCCCCEEE
Confidence 234444544 334456999999999999999999998766 1121111223445542 3699999999
Q ss_pred EEEEEEecCCCceEEEEEE
Q 006351 254 WPLWYRAAVPGKISLSITI 272 (649)
Q Consensus 254 iplwlra~~~G~~~l~lLf 272 (649)
+.+-+.....|.+.|-.-|
T Consensus 650 ~~~~~~P~~~G~~~L~a~f 668 (687)
T 2q3z_A 650 VRMDLVPLHMGLHKLVVNF 668 (687)
T ss_dssp EEEEECCCSSSCEEEEEEE
T ss_pred EEEEEEeccccceEEEEEE
Confidence 9999999999988754444
No 6
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=93.90 E-value=4.3 Score=46.51 Aligned_cols=128 Identities=10% Similarity=0.102 Sum_probs=85.8
Q ss_pred eeeeEEECCCceEEEEEEEEecc-------eEEEEEEEEEEEEcc---eeeeeEeeeecccccccccccccccCCCCCce
Q 006351 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~-------~G~L~I~Gv~~~l~~---~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL 173 (649)
...+++|.|.+++.+.+.+.+.. .+.|+|..+ .++.. .+....+|.+
T Consensus 526 ~~~~~~L~p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~l---------------------- 582 (695)
T 1g0d_A 526 KTISVTVPAHKAHKEVMRLHYDDYVRCVSEHHLIRVKAL-LDAPGENGPIMTVANIPL---------------------- 582 (695)
T ss_dssp EEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EECCC---EEEEEEEEEC----------------------
T ss_pred eeEEEEECCCceEEEEEEECHHHHhhhcccCCeEEEEEE-EEECCCCeEEEEEEEEEE----------------------
Confidence 34699999999999999998653 356666532 22221 1111222222
Q ss_pred EEEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCC
Q 006351 174 KFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGET 250 (649)
Q Consensus 174 ~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGe 250 (649)
..|.|.+.+ +.....|+-..+.++|+|.=..||++..+. -| ++.. ..+.++ ..+.||+
T Consensus 583 ------~~P~l~I~v---~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG~GL~~~--------~~~~~~--~~v~Pg~ 643 (695)
T 1g0d_A 583 ------STPELLVQV---PGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEGAGLLSA--------TQIHVN--GAVAPSG 643 (695)
T ss_dssp ------BCCCCEEEC---CSCEETTCCEEEEEEEECCSSSCEESCEEEEEETTTEEE--------EEEECS--SEECTTC
T ss_pred ------cCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCcc--------eEEecC--CCcCCCC
Confidence 223344443 556678999999999999999999998876 22 2111 233341 3699999
Q ss_pred eEEEEEEEEecCCCceEEEEEEE
Q 006351 251 PLLWPLWYRAAVPGKISLSITIY 273 (649)
Q Consensus 251 s~~iplwlra~~~G~~~l~lLfy 273 (649)
+.++.+-+.....|.+.|-.-|.
T Consensus 644 ~~~~~~~~~P~~~G~r~L~a~f~ 666 (695)
T 1g0d_A 644 KVSVKLSFSPMRTGVRKLLVDFD 666 (695)
T ss_dssp EEEEEEEECCSSCEEEEEEEEEE
T ss_pred EEEEEEEEEcCCccceEEEEEEE
Confidence 99999999999999887554443
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=93.27 E-value=3 Score=48.04 Aligned_cols=127 Identities=12% Similarity=0.127 Sum_probs=84.8
Q ss_pred eeeeEEECCCceEEEEEEEEecc-------eEEEEEEEEEEEEcc---eeeeeEeeeecccccccccccccccCCCCCce
Q 006351 104 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 173 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~-------~G~L~I~Gv~~~l~~---~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL 173 (649)
...+++|.|.|++.+.+.+.+.. ...|+|..+. ++.. .+....+|.+
T Consensus 571 ~~~~~~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~~-~v~et~~~~~~~~di~l---------------------- 627 (731)
T 1ex0_A 571 ETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTA-RINETRDVLAKQKSTVL---------------------- 627 (731)
T ss_dssp EEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEEE-EETTTCCEEEEEEEEEC----------------------
T ss_pred eeEEEEECCCceEEEEEEECHHHHhhhccCCCEEEEEEEE-EECCCCeEEEEEEEEEE----------------------
Confidence 34699999999999999998653 3566665332 2211 1222222222
Q ss_pred EEEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCC
Q 006351 174 KFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGET 250 (649)
Q Consensus 174 ~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGe 250 (649)
..|-|.+.+. .....|+-..+.++|+|.=..||+|..+. -| ++.. ..+.+ ..|.||+
T Consensus 628 ------~~P~l~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~--------~~~~~---~~v~pg~ 687 (731)
T 1ex0_A 628 ------TIPEIIIKVR---GTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGVTRP--------MKKMF---REIRPNS 687 (731)
T ss_dssp ------BCCCCEEEEE---ECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTTEEE--------EEEEE---EEECTTC
T ss_pred ------eCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCce--------eeEec---CccCCCC
Confidence 2334444443 34467999999999999999999998876 22 2111 23333 3699999
Q ss_pred eEEEEEEEEecCCCceEEEEEEE
Q 006351 251 PLLWPLWYRAAVPGKISLSITIY 273 (649)
Q Consensus 251 s~~iplwlra~~~G~~~l~lLfy 273 (649)
+.++.+-+.....|.+.|-.-|.
T Consensus 688 ~~~~~~~~~P~~~G~r~L~a~f~ 710 (731)
T 1ex0_A 688 TVQWEEVCRPWVSGHRKLIASMS 710 (731)
T ss_dssp EEEEEEEECCSSCEEEEEEEEEE
T ss_pred EEEEEEEEEeccccceEEEEEEE
Confidence 99999999999999887654443
No 8
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=92.53 E-value=0.71 Score=41.12 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEe
Q 006351 181 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA 260 (649)
Q Consensus 181 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra 260 (649)
+|-|.+... -|.....|+-..+.++++|.|.....+..+. |..++. .+.-..-..|.+|++.++.+-..+
T Consensus 2 ~PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~---ly~~g~------~v~t~~v~~LaaG~s~tv~~~w~~ 71 (114)
T 2l0d_A 2 IPDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVS---LLVDGI------VVDTQTVTSLESENSTNVDFHWTL 71 (114)
T ss_dssp CCCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEE---EEETTE------EEEEEEESCBCBTCEEEEEEEEEC
T ss_pred CCCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEE---EEECCE------EEcceecccccCCCEEEEEEEEee
Confidence 476777655 4888999999999999999999887777666 222211 111000136999999999987776
Q ss_pred c-CCCceEEEEEEEEec
Q 006351 261 A-VPGKISLSITIYYEM 276 (649)
Q Consensus 261 ~-~~G~~~l~lLfyYe~ 276 (649)
. ..|.+.|...+-.+.
T Consensus 72 ~~~~G~ytl~a~VD~~n 88 (114)
T 2l0d_A 72 DGTANSYTLTVNVDPEN 88 (114)
T ss_dssp CCSCSEEEEEEEECTTC
T ss_pred cCcCceEEEEEEECCCC
Confidence 6 589999998875543
No 9
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=92.20 E-value=0.52 Score=53.89 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=59.6
Q ss_pred ccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 006351 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (649)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 103 (649)
.+-...+++|+++.++|.|+|||.++|.=--+++.. . ... . +
T Consensus 589 I~v~g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG----~--GL~-----------~------~--------------- 630 (695)
T 1g0d_A 589 VQVPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEG----A--GLL-----------S------A--------------- 630 (695)
T ss_dssp EECCSCEETTCCEEEEEEEECCSSSCEESCEEEEEE----T--TTE-----------E------E---------------
T ss_pred EEeCCCcccCCeEEEEEEEECCCCCcccceEEEEEC----C--CCC-----------c------c---------------
Confidence 334456789999999999999999987633333321 1 000 0 0
Q ss_pred eeeeE--EECCCceEEEEEEEEecceEEEEEE-EEEEEEcceeeeeEeeeec
Q 006351 104 SEVDI--SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFESN 152 (649)
Q Consensus 104 ~~~~i--~L~p~etk~v~L~v~P~~~G~L~I~-Gv~~~l~~~v~g~~~fe~~ 152 (649)
....+ .++|+++-.+++.++|.+.|.=++. .+..+-...|.|...+.+.
T Consensus 631 ~~~~~~~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V~ 682 (695)
T 1g0d_A 631 TQIHVNGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVTTVVVH 682 (695)
T ss_dssp EEEECSSEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEE
T ss_pred eEEecCCCcCCCCEEEEEEEEEcCCccceEEEEEEECCcccCcEeEEEEEEe
Confidence 11234 6899999999999999999987763 2322222346777666553
No 10
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=90.99 E-value=1.1 Score=51.74 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=58.2
Q ss_pred cccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 006351 25 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (649)
Q Consensus 25 ~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 104 (649)
+-...+++|+++.|+|.|+|||.++|. |..| +-++-... . + ..
T Consensus 635 ~v~g~~~v~~~l~v~vsf~NPL~~~L~--~c~~----~vEG~GL~-----------~------~--------------~~ 677 (731)
T 1ex0_A 635 KVRGTQVVGSDMTVTVQFTNPLKETLR--NVWV----HLDGPGVT-----------R------P--------------MK 677 (731)
T ss_dssp EEEECCBTTSCEEEEEEEECCSSSCEE--EEEE----EEEETTTE-----------E------E--------------EE
T ss_pred EeCCCcccCCeEEEEEEEECCCCCccc--ceEE----EEECCCCC-----------c------e--------------ee
Confidence 334456899999999999999999876 3333 22211110 0 0 01
Q ss_pred eeeEEECCCceEEEEEEEEecceEEEEEE-EEEEEEcceeeeeEeeeec
Q 006351 105 EVDISLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFESN 152 (649)
Q Consensus 105 ~~~i~L~p~etk~v~L~v~P~~~G~L~I~-Gv~~~l~~~v~g~~~fe~~ 152 (649)
..-=.++|+++-.+++.++|.+.|.=+|. .+..+-...|.|...+.+.
T Consensus 678 ~~~~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V~ 726 (731)
T 1ex0_A 678 KMFREIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGELDVQIQ 726 (731)
T ss_dssp EEEEEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEEB
T ss_pred EecCccCCCCEEEEEEEEEeccccceEEEEEEECCcccCcEeEEEEEEc
Confidence 12235999999999999999999987763 2322222346666666553
No 11
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=90.09 E-value=0.42 Score=54.75 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=56.5
Q ss_pred ccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 006351 26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 105 (649)
Q Consensus 26 ~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 105 (649)
-...+++|+++.|+|.|+|||.++|. |..| .-++-... .+ ...
T Consensus 593 v~g~~~v~~~~~v~v~f~NPL~~~L~--~c~~----~vEG~GL~-----------------~~--------------~~~ 635 (687)
T 2q3z_A 593 ILGEPKQKRKLVAEVSLQNPLPVALE--GCTF----TVEGAGLT-----------------EE--------------QKT 635 (687)
T ss_dssp EESCCSSSSCEEEEEEEECCSSSCBC--SEEE----EEECTTTC-----------------SS--------------CEE
T ss_pred eCCCcccCCeEEEEEEEECCCCCccc--ceEE----EEECCCCC-----------------CC--------------ceE
Confidence 34456789999999999999998875 4333 32211110 00 001
Q ss_pred eeE--EECCCceEEEEEEEEecceEEEEEE-EEEEEEcceeeeeEeeee
Q 006351 106 VDI--SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 151 (649)
Q Consensus 106 ~~i--~L~p~etk~v~L~v~P~~~G~L~I~-Gv~~~l~~~v~g~~~fe~ 151 (649)
..+ .++|+++-.+.+.++|.+.|.=+|. .+..+-...|.|...+.+
T Consensus 636 ~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~v~G~~~v~V 684 (687)
T 2q3z_A 636 VEIPDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVII 684 (687)
T ss_dssp EEECSCBCTTCEEEEEEEECCCSSSCEEEEEEEECSSSCCEEEEEEEC-
T ss_pred EecCCCcCCCCEEEEEEEEEeccccceEEEEEEEcCcccCcEeEEEEEE
Confidence 244 6899999999999999999987763 232222234666655543
No 12
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=88.67 E-value=1 Score=51.61 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=57.1
Q ss_pred ccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 006351 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (649)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 103 (649)
.+-...+++|+++.|+|.|+|||.++|. |..|. -++-.... .+ .
T Consensus 598 I~v~g~~~v~~~l~v~v~f~NPL~~~L~--~c~~~----vEG~GL~~----------------~~--------------~ 641 (692)
T 1vjj_A 598 LEVLNEARVRKPVNVQMLFSNPLDEPVR--DCVLM----VEGSGLLL----------------GN--------------L 641 (692)
T ss_dssp EEECSCCBTTSCEEEEEEEECCSSSCBC--SEEEE----EECTTTSS----------------SC--------------E
T ss_pred EEeCCCcccCCeEEEEEEEECCCCCccc--ceEEE----EECCCCCC----------------Cc--------------e
Confidence 3344556899999999999999998865 43333 22111100 00 0
Q ss_pred eeeeEEECCCceEEEEEEEEecceEEEEEE-EEEEEEcceeeeeEeeee
Q 006351 104 SEVDISLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 151 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~~G~L~I~-Gv~~~l~~~v~g~~~fe~ 151 (649)
...-=.++|+++-.+++.++|.+.|.=++. .+..+-...|.|...+.+
T Consensus 642 ~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V 690 (692)
T 1vjj_A 642 KIDVPTLGPKERSRVRFDILPSRSGTKQLLADFSCNKFPAIKAMLSIDV 690 (692)
T ss_dssp EEEECCBCTTCEEEEEEEECCCSCEEEEEEEEEECSSSTTEEEEEEEEE
T ss_pred EEEcCccCCCCEEEEEEEEEeccccceEEEEEEECCcccCceeEEEEEE
Confidence 012224899999999999999999987763 222222234666655543
No 13
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.14 E-value=0.63 Score=40.25 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=52.8
Q ss_pred ceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEEEEEecCCCceEEEEEE
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPLWYRAAVPGKISLSITI 272 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~iplwlra~~~G~~~l~lLf 272 (649)
.+..|+.....++|+|.|..|+.= .+-.........|. -|....|+||++..+.+.+.+...|..+-.+.+
T Consensus 21 ~v~~g~~~~~~~~l~N~g~~p~~~--------~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~~g~f~~~i~v 92 (112)
T 2e6j_A 21 KVFTGSAHCYEAILYNKGSIDALF--------NMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSIILGNFEEEFLV 92 (112)
T ss_dssp EEESSCCEEEEEEEEECCSSCEEE--------EECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCCCEEEEEEECE
T ss_pred eEEECCEEEEEEEEEECCcceEEE--------EEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCCcceEEEEEEE
Confidence 368899999999999999987641 11100000001122 244569999999999999999988988888777
Q ss_pred EEecC
Q 006351 273 YYEMG 277 (649)
Q Consensus 273 yYe~~ 277 (649)
+-...
T Consensus 93 ~~~g~ 97 (112)
T 2e6j_A 93 NVNGS 97 (112)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 76544
No 14
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.09 E-value=0.69 Score=41.05 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=55.7
Q ss_pred ceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEEEEEecCCCceEEEEEE
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPLWYRAAVPGKISLSITI 272 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~iplwlra~~~G~~~l~lLf 272 (649)
.+..|+.+..++.|+|.|..|++ ..+.- ...|. .|....|+||++.++.+.+++...|.++-.+.+
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~-f~~~~------------~~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g~~~~~l~v 102 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAV-FHIKT------------CRPFSIEPAIGTLNVGESMQLEVEFEPQSVGDHSGRLIV 102 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEE-EEEEC------------CTTEEEESSEEEECTTCEEEEEEEECCSSSBCCCCBCEE
T ss_pred CeecCCeEEEEEEEEECCCCCEE-EEEec------------CCCeEEECCcCEECCCCEEEEEEEEEcCCCccEEEEEEE
Confidence 47889999999999999998765 23330 11232 345579999999999999999999999998888
Q ss_pred EEecC
Q 006351 273 YYEMG 277 (649)
Q Consensus 273 yYe~~ 277 (649)
.|...
T Consensus 103 ~~~~g 107 (122)
T 2ys4_A 103 CYDTG 107 (122)
T ss_dssp EESSS
T ss_pred EECCC
Confidence 88544
No 15
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=85.80 E-value=8 Score=34.60 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=54.5
Q ss_pred cCceEEEEEEEeCCccCcEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 006351 32 AGEPVKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 104 (649)
Q Consensus 32 vgEpi~V~V~l~NPL~ipl~l~-------~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 104 (649)
.|+.+.+.++++|+=.-++.|+ ++.|. ..++.. + =.=+++.-|+..
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~----d~~G~~--------------V---------wrwS~~~~FtQa 68 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVY----DSEHKE--------------R---------YRYSKEKMFTQA 68 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEE----CTTCCE--------------E---------EETTTTCCCCCC
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEE----CCCCCE--------------E---------EEccccchhhhh
Confidence 7899999999999999888876 33322 111100 0 011345567777
Q ss_pred eeeEEECCCceEEEEEEEE-ecceEEEEEEEE
Q 006351 105 EVDISLGGAETILVQLMVT-PKVEGILKIVGV 135 (649)
Q Consensus 105 ~~~i~L~p~etk~v~L~v~-P~~~G~L~I~Gv 135 (649)
....+|.|+|++......- +-.+|...+.+.
T Consensus 69 ~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a~ 100 (120)
T 3isy_A 69 FQNLTLESGETYDFSDVWKEVPEPGTYEVKVT 100 (120)
T ss_dssp CEEEEECTTCEEEEEEEESSCCCSEEEEEEEE
T ss_pred hceEEECCCCEEEEEEEeCCCCCCccEEEEEE
Confidence 7899999999999999998 457898887754
No 16
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.10 E-value=2.5 Score=36.37 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=62.0
Q ss_pred hccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCc
Q 006351 21 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSS 100 (649)
Q Consensus 21 ~~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 100 (649)
+...-+...+..|++.+-.++|+|-=++|+.++-+ .+.... ...
T Consensus 13 ~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~-------~~~~~~-----------------------------~~~ 56 (112)
T 2e6j_A 13 NFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMT-------PPTSAL-----------------------------GAC 56 (112)
T ss_dssp SCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEEC-------CCSSHH-----------------------------HHH
T ss_pred CcccEecEeEEECCEEEEEEEEEECCcceEEEEEe-------cCCccc-----------------------------cCc
Confidence 34567888899999999999999999988876542 110000 001
Q ss_pred eeeeeeeEEECCCceEEEEEEEEecceEEEEEEEEEEEEcc
Q 006351 101 FTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 141 (649)
Q Consensus 101 f~~~~~~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l~~ 141 (649)
|+.....=.|.|+++..|.+...|+..|.+.-. +.+.+.|
T Consensus 57 f~v~p~~g~i~pg~~~~i~V~f~~~~~g~f~~~-i~v~~~g 96 (112)
T 2e6j_A 57 FVFSPKEGIIEPSGVQAIQISFSSIILGNFEEE-FLVNVNG 96 (112)
T ss_dssp CEEESSEEEECTTBCCEEEEEECCCCCEEEEEE-ECEEESS
T ss_pred EEEECCcCEECCCCEEEEEEEEECCCcceEEEE-EEEEECC
Confidence 333446789999999999999999999988755 6666666
No 17
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=76.76 E-value=14 Score=31.93 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=59.1
Q ss_pred CCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEE
Q 006351 181 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLW 257 (649)
Q Consensus 181 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplw 257 (649)
-|.|.+.+. ...-.|+-..+.++|+|.=..||+|..+. -| +... ..+.+ ..+.||++.++.+-
T Consensus 5 ~P~i~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~--------~~~~~---~~v~pg~~~~~~~~ 70 (102)
T 2xzz_A 5 QSMLSLTLL---GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRP--------KILNV---GDIGGNETVTLRQS 70 (102)
T ss_dssp -CEEEEEES---SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEE--------EEEEE---CCBCTTCEEEEEEE
T ss_pred CCcEEEEEC---CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcc--------eEEEc---CcCCCCCEEEEEEE
Confidence 366766664 44567999999999999999999998877 22 2111 23333 36999999999999
Q ss_pred EEecCCCceEEEEEEE
Q 006351 258 YRAAVPGKISLSITIY 273 (649)
Q Consensus 258 lra~~~G~~~l~lLfy 273 (649)
+.....|.+.|---|.
T Consensus 71 ~~P~~~G~~~L~a~f~ 86 (102)
T 2xzz_A 71 FVPVRPGPRQLIASLD 86 (102)
T ss_dssp ECCCSCSSCCCEEEEE
T ss_pred EecCcccceEEEEEEE
Confidence 9999999888655554
No 18
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=76.10 E-value=22 Score=31.97 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=50.8
Q ss_pred eEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 006351 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (649)
Q Consensus 29 ~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 108 (649)
....|+++++.++++|==..+..=-.|.|.. ++.. +....+
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv-----ng~~----------------------------------v~t~~v 68 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI-----NGTL----------------------------------YKNWTV 68 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEE-----TTEE----------------------------------EEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEE-----CCEE----------------------------------EeeEEe
Confidence 4578999999999999888886655555542 1111 012355
Q ss_pred EECCCceEEEEEEEEecceEEEEEEEE
Q 006351 109 SLGGAETILVQLMVTPKVEGILKIVGV 135 (649)
Q Consensus 109 ~L~p~etk~v~L~v~P~~~G~L~I~Gv 135 (649)
.|.+++++++.+..+|...|.+.|.-+
T Consensus 69 ~La~G~s~tv~f~~~~~~~G~~~v~Av 95 (127)
T 3idu_A 69 SLGPKEEKVLTFNWTPTQEGMYRINAT 95 (127)
T ss_dssp EECTTCEEEEEEEECCSSCEEEEEEEE
T ss_pred ccCCCCeEEEEEEEEcCCCcEEEEEEE
Confidence 799999999999999999999888754
No 19
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.07 E-value=15 Score=32.26 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=52.5
Q ss_pred ccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 006351 24 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 103 (649)
Q Consensus 24 ~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 103 (649)
.-+...|.+|+.-+..+.++|-=+.+..+ .|+ .. ..|.+
T Consensus 31 ~l~fg~~~v~~~~~~~~~l~N~g~~~~~f-----~~~--~~----------------------------------~~F~i 69 (122)
T 2ys4_A 31 KLNFSTCPVKYSTQKILLVRNIGNKNAVF-----HIK--TC----------------------------------RPFSI 69 (122)
T ss_dssp EECCCSEESSSCEEEEEEEECCSSSCEEE-----EEE--CC----------------------------------TTEEE
T ss_pred eeecCCeecCCeEEEEEEEEECCCCCEEE-----EEe--cC----------------------------------CCeEE
Confidence 46789999999999999999987777664 232 11 13566
Q ss_pred eeeeEEECCCceEEEEEEEEecceEE
Q 006351 104 SEVDISLGGAETILVQLMVTPKVEGI 129 (649)
Q Consensus 104 ~~~~i~L~p~etk~v~L~v~P~~~G~ 129 (649)
....-.|.|+++..+.+...|++.|.
T Consensus 70 ~P~~g~L~pg~~~~i~V~F~P~~~g~ 95 (122)
T 2ys4_A 70 EPAIGTLNVGESMQLEVEFEPQSVGD 95 (122)
T ss_dssp ESSEEEECTTCEEEEEEEECCSSSBC
T ss_pred ECCcCEECCCCEEEEEEEEEcCCCcc
Confidence 66789999999999999999998875
No 20
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=71.72 E-value=9 Score=33.56 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=42.8
Q ss_pred EEEEEEEecccccccceEEe--eeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEEecCC
Q 006351 202 HLVLELKNQSDFSVKKMTNA--EQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGD 278 (649)
Q Consensus 202 ~~~l~L~N~g~~pv~~l~v~--~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyYe~~~ 278 (649)
...+.|+|.+..++ -.+|+ .| ..|. -|.-+.|+||++.++-+|+++..+. .=+||++|-...
T Consensus 18 ~~~l~L~N~t~~~v-aFKVKtT~p------------~~y~VrP~~G~I~P~~~~~i~I~~q~~~~~--~dKflvq~~~~~ 82 (109)
T 1row_A 18 SSTHKLVNGGAEKI-VFKIKSSNN------------NEYRIAPVFGFVDPSGSKDVVITRTAGAPK--EDKLVVHFASAP 82 (109)
T ss_dssp EEEEEEEECSSSCE-EEEEEESCS------------SSEEEECSEEEECTTEEEEEEEEECSCCCE--EEEEEEEEEECC
T ss_pred eEEEEEEcCCCCeE-EEEEEeCCC------------CceEEcCCceEECCCCeEEEEEEeCCCCCC--CCEEEEEEEECC
Confidence 47999999998765 23444 34 1222 1334699999999999999985433 448888886653
No 21
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=71.07 E-value=15 Score=33.42 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred eEEEEEEEeCCccCcEEeeeEEEEEEE
Q 006351 35 PVKVDIEFKNPLQIPISISNISLICEL 61 (649)
Q Consensus 35 pi~V~V~l~NPL~ipl~l~~I~L~~~f 61 (649)
+|.+.+.++||..+||.++.+.+...+
T Consensus 19 ~~~~~l~V~NPN~~~l~i~gl~y~v~l 45 (136)
T 3but_A 19 EIVALAKVRNEDVVPIVVSGYHYTIEM 45 (136)
T ss_dssp EEEEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcceeeeceEEEEEE
Confidence 488999999999999999988766554
No 22
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=70.39 E-value=10 Score=34.08 Aligned_cols=82 Identities=11% Similarity=-0.039 Sum_probs=53.3
Q ss_pred CCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEE--EEEEEEecC-----C
Q 006351 191 LPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLL--WPLWYRAAV-----P 263 (649)
Q Consensus 191 lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~--iplwlra~~-----~ 263 (649)
-|.....|+...+..+++|.|..+..+..+. |.++++......+=... -..|.+|++.+ +++.+-... .
T Consensus 8 sP~~p~~g~~vTvsatVkN~Gt~~s~a~~V~---~yl~~p~~gg~~vgt~t-v~~LaaG~s~t~~v~~~~~~~~~~~a~~ 83 (122)
T 2kut_A 8 SKETPFEGEEITVSARVTNRGAAEAHNVPVA---VYLGNPAQGGVEIGRDT-ISRIPVGGTGLARVQWKATRKLAGRAAN 83 (122)
T ss_dssp CTTSCCTTCEEEEEEEEECCSSSCBCCCCEE---ECSSCTTTCCCCCBCCC-CSCBCTTCEEECCEEEECCCCCSSCCSC
T ss_pred CCCCCCCCCeEEEEEEEEeCCCcccCcEEEE---EEeCCCccCCeEEeeEE-ccccCCCCeEEEEEEEecCCcccccccC
Confidence 4778899999999999999999887776666 44444211100010111 13799999999 554444222 3
Q ss_pred CceEEEEEEEEec
Q 006351 264 GKISLSITIYYEM 276 (649)
Q Consensus 264 G~~~l~lLfyYe~ 276 (649)
|.+.++-.+-...
T Consensus 84 Gsy~v~AvVD~~n 96 (122)
T 2kut_A 84 PGVPVYAVVDPDN 96 (122)
T ss_dssp CCCCCCEEECCTT
T ss_pred ceEEEEEEEcCCC
Confidence 8888887775543
No 23
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=68.92 E-value=24 Score=35.19 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=49.1
Q ss_pred ceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 006351 28 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (649)
Q Consensus 28 ~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 107 (649)
+-++.||.+.+.+.+.|=++-.+.++ +. +...++.... . ..... ....
T Consensus 90 ~sv~rGE~~~l~~~V~Ny~~~~~~v~-V~----l~~~~~~~~~-~-----------------------~~~~~---~~~~ 137 (252)
T 3hrz_B 90 YSVVKNEQVEIRAILHNYVNEDIYVR-VE----LLYNPAFCSA-S-----------------------TKGQR---YRQQ 137 (252)
T ss_dssp SCEETTCCEEEEEEEEECSSSCEEEE-EE----ECCCTTEEES-C-----------------------CSSCC---EEEE
T ss_pred cEEeeCCEEEEEEEEEcccCceEEEE-EE----EEcCCceEee-c-----------------------CCCCc---eEEE
Confidence 34568999999999999998776542 22 2222111000 0 00000 1357
Q ss_pred EEECCCceEEEEEEEEecceEEEEEE
Q 006351 108 ISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 108 i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
+.+.+++++.+.+.++|++.|.+.|+
T Consensus 138 v~v~a~~~~~v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 138 FPIKALSSRAVPFVIVPLEQGLHDVE 163 (252)
T ss_dssp EEECTTEEEEEEEEEEECSSEEEEEE
T ss_pred EEECCCCeEEEEEEEEeccCCcEEEE
Confidence 99999999999999999999987665
No 24
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=67.95 E-value=10 Score=33.72 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=42.3
Q ss_pred EEEEEEEecccccccceEEe--eeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEEecC
Q 006351 202 HLVLELKNQSDFSVKKMTNA--EQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMG 277 (649)
Q Consensus 202 ~~~l~L~N~g~~pv~~l~v~--~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyYe~~ 277 (649)
...+.|+|.+..++ -.+|+ .| ..|. -|.-+.|+||++..+-+|+++..+. .=+||++|-..
T Consensus 26 ~~~l~L~N~t~~~v-AFKVKtT~p------------~~YrVrP~~G~I~Pg~~~~I~I~~q~~~~k--~DKflVq~~~~ 89 (116)
T 1m1s_A 26 NSTHNITSESDSRL-AFKVKSSNN------------EHYRVRPVYGFVDAKGKSKLDINRLPGPPK--EDKIVIQYAEV 89 (116)
T ss_dssp EEEEEEEECSSSEE-EEEEEESCT------------TTEEEECSEEEECTTCEEEEEEEECSCCSC--EEEEEEEEEEE
T ss_pred EEEEEEECCCCCeE-EEEEEecCC------------CceEEcCCceEECCCCeEEEEEEeCCCCCC--CCEEEEEEEEC
Confidence 78999999998755 23444 33 1222 1334689999999999999975333 44888888654
No 25
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=66.43 E-value=24 Score=37.51 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=45.9
Q ss_pred ceecceEEEEEEEEEecccccccceEEe---ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNA---EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~---~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
.-+.||...+.+++.|.|+.+++.|++. +- ++.+.+..- ...|.....+..+.||++..=-+.|+.-
T Consensus 223 ~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~y-~~~Va~~E~~epV~pgst~~k~~~l~P~ 293 (380)
T 3ugu_A 223 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYY-IKTVAAEEAQEKVPPNSSLTKTLTLVPL 293 (380)
T ss_dssp EEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCEE-EEEEEEEECSCCBCTTEEEEEEEEECCC
T ss_pred cCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCCeE-EEEEEEeccCCcCCCCCeEEeeEEEEEe
Confidence 4789999999999999999999999888 33 555532211 1123333224488999887666666543
No 26
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=65.43 E-value=11 Score=33.59 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=47.6
Q ss_pred eEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccCCcccccC
Q 006351 493 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 572 (649)
Q Consensus 493 ~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 572 (649)
.+.++|++.|-+..++.+.+..... + |+.+.. ..|..+
T Consensus 19 ~v~~~ltv~N~s~~~v~l~f~Sgq~-------------------------~------Df~v~d-~~G~~V---------- 56 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIEFQFSTGQK-------------------------F------ELVVYD-SEHKER---------- 56 (120)
T ss_dssp CEEEEEEEEECSSSCEEEEESSSCC-------------------------E------EEEEEC-TTCCEE----------
T ss_pred eEEEEEEEEcCCCCcEEEEeCCCCE-------------------------E------EEEEEC-CCCCEE----------
Confidence 7889999999999888877764322 1 222211 112111
Q ss_pred ceEEecc-----cceeEEeCCCceEEEEeEEE-EeeceeeecC
Q 006351 573 PFIWSGS-----SASSVRLQPMSTTDIAMKVC-LFSPGTYDLS 609 (649)
Q Consensus 573 ~f~w~G~-----~~~~~~l~p~e~~~v~l~~~-~~~pGvYdL~ 609 (649)
|.|+.- .....+|+|||+...+..+- ...||.|-|-
T Consensus 57 -wrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~ 98 (120)
T 3isy_A 57 -YRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTYEVK 98 (120)
T ss_dssp -EETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEEEEEE
T ss_pred -EEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCccEEEE
Confidence 233432 33477899999999999998 5677766543
No 27
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=61.30 E-value=43 Score=33.35 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=56.2
Q ss_pred cCCcceecceEEEEEEEEEeccccccc-ceEEe-ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCCCce
Q 006351 190 PLPERAYAGDLRHLVLELKNQSDFSVK-KMTNA-EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKI 266 (649)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~g~~pv~-~l~v~-~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~G~~ 266 (649)
.+|..+..||...+.+.+.|.....++ .+.|. .+ |...+..... +.. ...|.+|++..+++.+++...|.+
T Consensus 87 ~LP~sv~rGE~~~l~~~V~Ny~~~~~~v~V~l~~~~~~~~~~~~~~~----~~~--~v~v~a~~~~~v~f~i~p~~~G~~ 160 (252)
T 3hrz_B 87 QMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQR----YRQ--QFPIKALSSRAVPFVIVPLEQGLH 160 (252)
T ss_dssp CCCSCEETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSSCC----EEE--EEEECTTEEEEEEEEEEECSSEEE
T ss_pred CCCcEEeeCCEEEEEEEEEcccCceEEEEEEEEcCCceEeecCCCCc----eEE--EEEECCCCeEEEEEEEEeccCCcE
Confidence 789999999999999999999876654 23333 33 4433322111 110 136789999999999998889998
Q ss_pred EEEEEEEE
Q 006351 267 SLSITIYY 274 (649)
Q Consensus 267 ~l~lLfyY 274 (649)
.+.+-..-
T Consensus 161 ~i~v~A~~ 168 (252)
T 3hrz_B 161 DVEIKASV 168 (252)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 88887764
No 28
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=56.98 E-value=14 Score=34.77 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=47.4
Q ss_pred EEecCCCeEEEEEccCC--cceecceEEEEEEEEEecccccccceEEe--eeeeecCCCCC--CCCeeeecCCCcccCCC
Q 006351 176 IVIKSLPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQSVAGGNFNK--MPQAVFSFPEGISIQGE 249 (649)
Q Consensus 176 ~V~~~~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P~~~~g~~~~--~~~~vf~lp~~~~L~pG 249 (649)
++.+.||| .|...- ..+.-||...+.-+.+|.+..|+....+= .| +.... ..-.-|=| +...|+||
T Consensus 40 ~~~~~lpW---~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~G~A~ynV~P----~~a~~YF~KieCFCF-~eQ~L~pg 111 (164)
T 1so9_A 40 NVAAGLPW---EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTP----MAAGAYFNKVQCFCF-TETTLEPG 111 (164)
T ss_dssp EECTTSCE---EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECS----SSCSTTBTTSCCSSC-SCCEECTT
T ss_pred ecCCCCce---EEEeceeEEEEcCCCeEEEEEEEECCCCCcEEEEECceeCH----HHHhhhccceeeEcc-cCcccCCC
Confidence 34456665 333222 24788999999999999999988765544 23 10000 00112223 25699999
Q ss_pred CeEEEEEEEE
Q 006351 250 TPLLWPLWYR 259 (649)
Q Consensus 250 es~~iplwlr 259 (649)
|++++|+.+-
T Consensus 112 E~~~MPV~F~ 121 (164)
T 1so9_A 112 EEMEMPVVFF 121 (164)
T ss_dssp CEEEEEECCC
T ss_pred CeEeeeEEEE
Confidence 9999999774
No 29
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=56.75 E-value=18 Score=32.81 Aligned_cols=77 Identities=12% Similarity=-0.046 Sum_probs=46.6
Q ss_pred cCCCeEEEEEccCCc-ceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEE
Q 006351 179 KSLPKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPL 256 (649)
Q Consensus 179 ~~~P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~ipl 256 (649)
+.+|.+.+.-..+.- .+..|+...-.++|+|.|..|+.==... -.+........|. -|....|.||++..+.+
T Consensus 22 e~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~-----~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v 96 (140)
T 3qbt_B 22 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIP-----KLNDSQYCKPWLRAEPFEGYLEPNETVDISL 96 (140)
T ss_dssp HTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEEC-----CTTCSSSSCTTEEEESCEEEECTTCEEEEEE
T ss_pred ccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEec-----CCCchhhhhHhhhcCCcccccCCCCeeEEEE
Confidence 345666653222221 3677888899999999999987611111 0000111111222 36667999999999999
Q ss_pred EEEe
Q 006351 257 WYRA 260 (649)
Q Consensus 257 wlra 260 (649)
.+..
T Consensus 97 ~~~v 100 (140)
T 3qbt_B 97 DVYV 100 (140)
T ss_dssp EECB
T ss_pred EEEE
Confidence 9984
No 30
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=54.45 E-value=1.5e+02 Score=28.36 Aligned_cols=155 Identities=9% Similarity=0.063 Sum_probs=89.5
Q ss_pred eecceEEEEEEEEEecccccccceEEeee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecC---CCceEEEE
Q 006351 195 AYAGDLRHLVLELKNQSDFSVKKMTNAEQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAV---PGKISLSI 270 (649)
Q Consensus 195 ll~GEi~~~~l~L~N~g~~pv~~l~v~~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~---~G~~~l~l 270 (649)
+-.|+.....++++|.|..|+.=-.+.-| ++... +....|+||++-++.+.+-+.. .|...-.+
T Consensus 15 v~~g~~~~~~~~i~N~g~~pl~i~~~~~p~~~~~~------------~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~i 82 (220)
T 2qsv_A 15 SMPEDEGVVRLVVNNTDESDLQVAVVSLPSFVSLD------------DRAFRLQAREPRELNLSLAVPRNMPPGMKDEPL 82 (220)
T ss_dssp BCTTCCCEEEEEEEECSSSCEEEEEEECCTTEECS------------CCEEEECSSSCEEEEEEECCCTTCCSEEEEEEE
T ss_pred ccCCCcceEEEEEEeCCCCceEEEeccCCCceEee------------eCcceeCCCCceEEEEEEcchhcccCCceeeEE
Confidence 56799999999999999999763333224 44332 1246899999999999998874 46655555
Q ss_pred EEEEecCCCCccceEEEEEEEEEEEEee-----------eeeEEEEEeec--ccccceEEEEEEEEeCCCCccEEEEEEE
Q 006351 271 TIYYEMGDVSSVIKYRLLRMHYNLEVLP-----------SLNVSFQISPW--SSRLQQYLVRMDVVNQTSSENFQIHQLS 337 (649)
Q Consensus 271 LfyYe~~~~~~~~~~R~~R~~~~i~V~p-----------SL~vs~~~~~s--~s~~~~~~l~v~V~N~~~~~~~~l~Qvs 337 (649)
.++......... ... +....-.+.| .+.++ ....- .. -...--.+.+.|.... .+.|.+|.
T Consensus 83 ~v~~~~~~~~~~--~~~-~i~v~g~v~p~~~~~~~~~~~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~-pL~I~~v~ 156 (220)
T 2qsv_A 83 VLEVTSPETGKK--AVD-SVMVSLPLVDNFPALTAAQTGVMELS-TYLDMGQLD-GETTKAAIEIRNVGAG-PLRLHSVT 156 (220)
T ss_dssp EEEEECTTTCCE--EEE-EEEEEEEECCCGGGCCGGGCCCEECC-CEEEEEECT-TSCEEEEEEEEECSSS-CEEEEEEE
T ss_pred EEEEEcCCCCcc--ccc-EEEEEEEEcccchhhhhccCCEEEEE-eEEeeeccC-CCeEEEEEEEEECCCC-CEEEEEEE
Confidence 555543111110 111 3333333443 23333 11111 11 1334457788886644 78888887
Q ss_pred eeeeceEEEeeCCCcccCCCcccCccceeeEEEEEeec
Q 006351 338 SVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR 375 (649)
Q Consensus 338 ~vS~~W~l~~l~~~~si~~~~~l~p~q~~~~~f~~~~~ 375 (649)
+....=..+. +...+.||+...+-+.....
T Consensus 157 ~scgct~~~~--------~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 157 TRNPALTAVP--------DRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp ECSTTEEEEE--------SCSEECTTCEEEEEEEECHH
T ss_pred eCCCCEeeec--------CCccCCCCCEEEEEEEEecC
Confidence 7655444332 12357788877665544443
No 31
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=51.94 E-value=10 Score=35.06 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=41.2
Q ss_pred ceEEEEEEEEEecccccccceEEe--eeeeecCCCCCCCCeeee-cCCCcccCCCCeEEEEEEEEecC--CCceEEEEEE
Q 006351 198 GDLRHLVLELKNQSDFSVKKMTNA--EQSVAGGNFNKMPQAVFS-FPEGISIQGETPLLWPLWYRAAV--PGKISLSITI 272 (649)
Q Consensus 198 GEi~~~~l~L~N~g~~pv~~l~v~--~P~~~~g~~~~~~~~vf~-lp~~~~L~pGes~~iplwlra~~--~G~~~l~lLf 272 (649)
+..++..|+|+|.+..+| -.+|+ .| ..|. -|..+.|+||++..+-+++++.. ..++ +|++
T Consensus 34 ~~~~~~~l~L~N~s~~~V-aFKVKTT~p------------~~y~VrP~~GiI~P~~s~~V~V~lq~~~~~~~kD--KFlV 98 (152)
T 1wic_A 34 SGEKKTLIVLTNVTKNIV-AFKVRTTAP------------EKYRVKPSNSSCDPGASIDIIVSPHGGLTVSAQD--RFLI 98 (152)
T ss_dssp SSCCCEEEEEEBCSSSCE-EEEEEESCT------------TTEEEESSEEEECTTCEEEEEEEECSSSCCCSSC--CEEE
T ss_pred CceEEEEEEEEcCCCCeE-EEEEECCCC------------CceeecCCCcEECCCCeEEEEEEecCcccCCCCC--EEEE
Confidence 334568999999997654 22333 33 1121 24456999999999999999863 2333 5666
Q ss_pred EEec
Q 006351 273 YYEM 276 (649)
Q Consensus 273 yYe~ 276 (649)
++-.
T Consensus 99 qs~~ 102 (152)
T 1wic_A 99 MAAE 102 (152)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 32
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=50.33 E-value=70 Score=28.19 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=43.4
Q ss_pred ceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecC--C-CceEEEEE
Q 006351 198 GDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAV--P-GKISLSIT 271 (649)
Q Consensus 198 GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~--~-G~~~l~lL 271 (649)
|..+...|+|+|.+..++. .+++ .| .++ .-|..+.|+||++..+-+++++.. + ....=+|+
T Consensus 26 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~y~------------VrP~~G~i~P~~s~~v~V~~~~~~~~p~~~~~dkF~ 92 (128)
T 1z9l_A 26 TDVVTTNLKLQNPSDRKVC-FKVKTTAPRRYC------------VRPNSGVIDPGSIVTVSVMLQPFDYDPNEKSKHKFM 92 (128)
T ss_dssp SSCEEEEEEEECCSSSCEE-EEEEESCGGGEE------------EESCEEEECTTCEEEEEEEECCCCCCTTCCCCCEEE
T ss_pred CceEEEEEEEECCCCCeEE-EEEECCCCCceE------------EeCCCcEECCCCeEEEEEEECcCcCCcccccCCEEE
Confidence 4677889999999976542 2333 44 211 124456999999999999999752 2 12234677
Q ss_pred EEEecC
Q 006351 272 IYYEMG 277 (649)
Q Consensus 272 fyYe~~ 277 (649)
++|-..
T Consensus 93 V~s~~~ 98 (128)
T 1z9l_A 93 VQTIFA 98 (128)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777543
No 33
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=43.45 E-value=3.1e+02 Score=32.14 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=55.2
Q ss_pred cCCcceecceEEEEEEEEEeccc-ccccceEEe---ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCCC
Q 006351 190 PLPERAYAGDLRHLVLELKNQSD-FSVKKMTNA---EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPG 264 (649)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~g~-~pv~~l~v~---~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~G 264 (649)
.+|..+..||...+.+.|.|... .++ ++.+. .+ +...+........ ...|.+|++..+++.|++...|
T Consensus 86 ~LP~~v~~GD~~~i~~~v~N~~~~~~~-~v~v~l~~~~~~~~~~~~~~~~~~------~v~l~~~~~~~v~f~i~~~~~G 158 (915)
T 2hr0_B 86 RLPYSVVRNEQVEIRAVLYNYRQNQEL-KVRVELLHNPAFCSLATTKRRHQQ------TVTIPPKSSLSVPYVIVPLKTG 158 (915)
T ss_dssp ECCSEEETTCCEEEEEEEEECCSSCCE-EEEEEECCCTTEECSCCSSSCEEE------EEEECTTEEEEEEEEEEECSCE
T ss_pred cCCCEEecCcEEEEEEEEEcCCCCeeE-EEEEEEecCCceEeecCCCCccee------EEEECCCCeEEEEEEEEECccc
Confidence 67889999999999999999988 554 45555 22 4333322111111 2367899999999999987889
Q ss_pred ceEEEEEEEE
Q 006351 265 KISLSITIYY 274 (649)
Q Consensus 265 ~~~l~lLfyY 274 (649)
...+.+-..-
T Consensus 159 ~~~i~v~a~~ 168 (915)
T 2hr0_B 159 LQEVEVKAAV 168 (915)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 8888876653
No 34
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=41.52 E-value=40 Score=35.53 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=24.9
Q ss_pred eeEEECCCceEEEEEEEEecceEEEEEE
Q 006351 106 VDISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 106 ~~i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
.++.|..+.+..-.+.+..+++|.-+|.
T Consensus 80 ~s~~le~G~~Y~fki~lkAR~PG~~HVH 107 (382)
T 1yew_A 80 RSVRLEIGKTYDFRVVLKARRPGDWHVH 107 (382)
T ss_dssp SCBCCCTTCEEEEEEEEEECSCEEEEEE
T ss_pred ceEEecCCCeEeEEEEEecccCccccce
Confidence 5788889999999999999999998885
No 35
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=39.69 E-value=63 Score=37.19 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=51.5
Q ss_pred ceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 006351 28 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (649)
Q Consensus 28 ~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 107 (649)
+-++.||.+.+.+.+.|=++-++.++ |+ +...++...... + .....
T Consensus 162 ~~v~~GD~~~i~~~V~N~~~~~~~v~-v~----l~~~~~~~~~~~------------------------~-----~~~~~ 207 (767)
T 4fxk_B 162 MSVRRFEQLELRPVLYNYLDKNLTVS-VH----VSPVEGLCLAGG------------------------G-----GLAQQ 207 (767)
T ss_dssp SCEETTCEEEECCEEEECSSSCEEEE-EE----ECCCTTEECSSS------------------------S-----CCCEE
T ss_pred CeeccCCEEEEEEEEEECCCCCEEEE-EE----EEecCCeEEecC------------------------C-----ceeEE
Confidence 34679999999999999998777652 23 333221110000 0 01268
Q ss_pred EEECCCceEEEEEEEEecceEEEEEEEEE
Q 006351 108 ISLGGAETILVQLMVTPKVEGILKIVGVR 136 (649)
Q Consensus 108 i~L~p~etk~v~L~v~P~~~G~L~I~Gv~ 136 (649)
+.+.+++++.|.+.+.|...|.+.|.=..
T Consensus 208 ~~v~a~~~~~v~f~i~~~~~G~~~i~v~A 236 (767)
T 4fxk_B 208 VLVPAGSARPVAFSVVPTAAAAVSLKVVA 236 (767)
T ss_dssp EEECSSCEEECCEEEEECSCSEEEEEEEE
T ss_pred EEEcCCCeEEEEEEEEECccCcEEEEEEE
Confidence 99999999999999999999988776443
No 36
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.86 E-value=24 Score=32.18 Aligned_cols=51 Identities=18% Similarity=0.099 Sum_probs=35.4
Q ss_pred ceEEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 198 GDLRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 198 GEi~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
|..+...|+|+|.+..++. .+|+ .| .++ .-|..+.|+||++..+-+++++.
T Consensus 30 ~~~~~~~l~L~N~s~~~Va-FKVKTT~p~~y~------------VrP~~GiI~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 30 TDVVTTNLKLQNPSDRKVC-FKVKTTAPRRYC------------VRPNSGIIDPGSIVTVSVMLQPF 83 (147)
T ss_dssp SSCCCEEEEEECCSSSCEE-EEEEESCTTSEE------------EESSEEECCTTCEEEEEEEECCC
T ss_pred CceEEEEEEEECCCCCcEE-EEEECCCCccEE------------EcCCCcEECCCCeEEEEEEECCC
Confidence 3566789999999976542 2333 34 211 12445699999999999999974
No 37
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=38.43 E-value=59 Score=29.32 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred EecccceeEEeCCCceEEEEeEEEEee
Q 006351 576 WSGSSASSVRLQPMSTTDIAMKVCLFS 602 (649)
Q Consensus 576 w~G~~~~~~~l~p~e~~~v~l~~~~~~ 602 (649)
|..-.-.+..|.||++..|.+.+++-.
T Consensus 76 wl~v~P~~G~L~Pge~~~I~v~~~v~~ 102 (140)
T 3qbt_B 76 WLRAEPFEGYLEPNETVDISLDVYVSK 102 (140)
T ss_dssp TEEEESCEEEECTTCEEEEEEEECBCH
T ss_pred hhhcCCcccccCCCCeeEEEEEEEEcc
Confidence 333345688999999999999998855
No 38
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=37.00 E-value=41 Score=31.84 Aligned_cols=59 Identities=29% Similarity=0.313 Sum_probs=41.8
Q ss_pred CceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEECC
Q 006351 33 GEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGG 112 (649)
Q Consensus 33 gEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~p 112 (649)
|-.+.+.+.++||-.++|.+.+|....+.... ...+ . ...+.++|.+
T Consensus 61 ~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~--~las---------------G----------------~s~~~~tIpa 107 (174)
T 1yyc_A 61 GVDYHAKVSVKNPYSQSIPICQISYILKSATR--TIAS---------------G----------------TIPDPGSLVG 107 (174)
T ss_dssp SEEEEEEEEEEECSSSCCBCCSEEEEEEESSS--CEEE---------------E----------------EESCCCBCCS
T ss_pred eEEEEEEEEEECCCCCCccccceEEEEEECCE--EEEE---------------E----------------ecCCCceECC
Confidence 34588999999999999999999987653332 1110 0 0125678888
Q ss_pred CceEEEEEEEEe
Q 006351 113 AETILVQLMVTP 124 (649)
Q Consensus 113 ~etk~v~L~v~P 124 (649)
..+.++.+.++-
T Consensus 108 ~g~~~v~Vpv~v 119 (174)
T 1yyc_A 108 SGTTVLDVPVKV 119 (174)
T ss_dssp SEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE
Confidence 888888887765
No 39
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=35.51 E-value=52 Score=35.10 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=25.1
Q ss_pred eeEEECCCceEEEEEEEEecceEEEEEE
Q 006351 106 VDISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 106 ~~i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
.++.|..+.+..-.+.+..+++|..+|.
T Consensus 108 ~s~~l~~G~~Y~fki~lkaR~PG~~HVH 135 (419)
T 3rfr_A 108 RSVSLEIGKDYAFSINLRGRRAGRWHVH 135 (419)
T ss_dssp SCBCCCTTCEEEEEEEEEECSCEEEEEE
T ss_pred ceEEecCCCeEeEEEEEecccCcccccc
Confidence 5888999999999999999999998875
No 40
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=33.18 E-value=48 Score=29.41 Aligned_cols=67 Identities=9% Similarity=-0.009 Sum_probs=43.1
Q ss_pred EEEEEEEEEecccccccceEEe--eeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCC---CceEEEEEEEE
Q 006351 200 LRHLVLELKNQSDFSVKKMTNA--EQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP---GKISLSITIYY 274 (649)
Q Consensus 200 i~~~~l~L~N~g~~pv~~l~v~--~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~---G~~~l~lLfyY 274 (649)
.+...|.|+|.+...+. .+|+ .| ..-+.-|..+.|.||++..+-+++++-.. ....=+|+++|
T Consensus 26 ~~~~~l~l~N~s~~~va-FKVKTT~p-----------~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~~kDKf~Vq~ 93 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIG-WAIKTTNM-----------RRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLNNDRITIEW 93 (126)
T ss_dssp CCCEEEEEEECSSSCEE-EEEEESCT-----------TTEEEESCEEEECTTCEEEEEEEECCCCGGGSCCSSCEEEEEE
T ss_pred ceEEEEEEECCCCCeEE-EEEEcCCC-----------CcEEEECCCeEECCCCEEEEEEEecCCCCCCCccCCCEEEEEE
Confidence 46678999999976542 2333 33 01112244569999999999999998421 23345788888
Q ss_pred ecCC
Q 006351 275 EMGD 278 (649)
Q Consensus 275 e~~~ 278 (649)
-...
T Consensus 94 ~~~p 97 (126)
T 1msp_A 94 TNTP 97 (126)
T ss_dssp EECC
T ss_pred EECC
Confidence 6543
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=31.29 E-value=1.5e+02 Score=37.52 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=48.9
Q ss_pred ceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 006351 28 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (649)
Q Consensus 28 ~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 107 (649)
.-++.||.+.+.+.+.|=++-++.+ ..++..+++... ... .+.. ....
T Consensus 822 ysv~rGEq~~l~v~VfNy~~~~~~V-----~V~L~~s~~~~~-~~~-----------------------~~~~---~~q~ 869 (1642)
T 3prx_B 822 YSVVKNEQVEIRAILHNYVNEDIYV-----RVELLYNPAFCS-AST-----------------------KGQR---YRQQ 869 (1642)
T ss_dssp SCEETTCCEEEEEEEEECSSSCEEE-----EEEECCCTTEEE-SCC-----------------------SSSC---CEEE
T ss_pred CEEecCCEEEEEEEEEcCCCCcEEE-----EEEEEcCCCeEe-ecc-----------------------CCCc---ceeE
Confidence 3466899999999999999876554 222332211100 000 0000 1267
Q ss_pred EEECCCceEEEEEEEEecceEEEEEE
Q 006351 108 ISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 108 i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
+.|.+++.++|.+.++|++.|...|.
T Consensus 870 v~v~a~~~~~v~f~i~p~~~G~~~i~ 895 (1642)
T 3prx_B 870 FPIKALSSRAVPFVIVPLEQGLHDVE 895 (1642)
T ss_dssp EEECSSEEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCeEEEEEEEEEeecccEEEE
Confidence 89999999999999999999977653
No 42
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=31.12 E-value=1.9e+02 Score=34.05 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=48.2
Q ss_pred ceEEcCceEEEEEEEeCCcc-CcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 006351 28 NICVAGEPVKVDIEFKNPLQ-IPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 106 (649)
Q Consensus 28 ~~~vvgEpi~V~V~l~NPL~-ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 106 (649)
+-++.||.+.+.+.+.|=++ -++.+ + .++...++ ...... .. .....
T Consensus 89 ~~v~~GD~~~i~~~v~N~~~~~~~~v---~--v~l~~~~~-~~~~~~-----------------------~~---~~~~~ 136 (915)
T 2hr0_B 89 YSVVRNEQVEIRAVLYNYRQNQELKV---R--VELLHNPA-FCSLAT-----------------------TK---RRHQQ 136 (915)
T ss_dssp SEEETTCCEEEEEEEEECCSSCCEEE---E--EEECCCTT-EECSCC-----------------------SS---SCEEE
T ss_pred CEEecCcEEEEEEEEEcCCCCeeEEE---E--EEEecCCc-eEeecC-----------------------CC---Cccee
Confidence 35678999999999999888 65543 2 22332211 100000 00 00136
Q ss_pred eEEECCCceEEEEEEEEecceEEEEEE
Q 006351 107 DISLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 107 ~i~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
.+.|.+++++.|.+.++|...|.+.|.
T Consensus 137 ~v~l~~~~~~~v~f~i~~~~~G~~~i~ 163 (915)
T 2hr0_B 137 TVTIPPKSSLSVPYVIVPLKTGLQEVE 163 (915)
T ss_dssp EEEECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EEEECCCCeEEEEEEEEECccceEEEE
Confidence 899999999999999999999877653
No 43
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=29.63 E-value=44 Score=29.74 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=30.5
Q ss_pred EEEEEeccc--ccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 204 VLELKNQSD--FSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 204 ~l~L~N~g~--~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
.|.|.|.|. .+|.+-.|.+ ..++. ..+|.||.+..|+||++++ +|-++.
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r---~v~~~----~~~y~Fp~~~~L~pg~~vt--Vwa~g~ 76 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIR---KIGDT----SVSYKYTSRYVLKAGQTVT--IWAANA 76 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEE---EETTE----EEEEECCTTCEECTTCEEE--EEETTS
T ss_pred EEEEEECCCCceecCCcEEEE---EeCCC----ceEEEcCCCcEECCCCEEE--EEECCC
Confidence 367789884 3455555541 01211 1369999889999999865 576544
No 44
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=29.40 E-value=66 Score=28.54 Aligned_cols=54 Identities=20% Similarity=0.452 Sum_probs=33.9
Q ss_pred ecceEEEEEEEEEeccc--ccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 196 YAGDLRHLVLELKNQSD--FSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 196 l~GEi~~~~l~L~N~g~--~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
+.||. |.|.|.|. .+|.+-.|++ .+++ ....+|.||.+..|+||++++ +|-++.
T Consensus 16 ~~g~f----V~l~N~s~~~~~L~gW~l~r---~v~~---~~~~~y~Fp~~~~L~pg~~vt--Iws~~~ 71 (121)
T 1ifr_A 16 EEGKF----VRLRNKSNEDQSMGNWQIKR---QNGD---DPLLTYRFPPKFTLKAGQVVT--IWAAGA 71 (121)
T ss_dssp TTSSE----EEEEECSSSCEECTTCEEEE---EETT---SCCEEEECCSSCEECTTCEEE--EEETTS
T ss_pred CCCCE----EEEEeCCCCccccCCCEEEE---EcCC---CccEEEEeCCCcEECCCCEEE--EEeCCC
Confidence 45554 67889884 3455555551 0111 123689999889999999854 676543
No 45
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.39 E-value=57 Score=29.77 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=35.3
Q ss_pred ecceEEEEEEEEEecc--cccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 196 YAGDLRHLVLELKNQS--DFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 196 l~GEi~~~~l~L~N~g--~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
+.||. |.|.|.| ..+|.+-.|++ ..++ ....+|.||.+..|+||++++ ||-++.
T Consensus 31 ~~Gef----V~L~N~s~~~~~L~GW~L~r---~v~g---~~~~~y~Fp~~~~L~pg~~Vt--Iws~~~ 86 (139)
T 2lll_A 31 LEGKF----VQLKNNSDKDQSLGNWRIKR---QVLE---GEEIAYKFTPKYILRAGQMVT--VWAAGA 86 (139)
T ss_dssp SSCSE----EEEEECSSSCEECSSCEEEE---EETT---SCEEEEECCTTCEECTTCEEE--EEEGGG
T ss_pred CCCCE----EEEEECCCCccccCCCEEEE---ecCC---CccEEEEECCCcEECCCCEEE--EEeCCC
Confidence 56664 7789998 44455656551 0111 123689999889999999854 777654
No 46
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=28.93 E-value=52 Score=30.21 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=40.3
Q ss_pred eEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEECCCc
Q 006351 35 PVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAE 114 (649)
Q Consensus 35 pi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~L~p~e 114 (649)
.+.+.+.++||-.++|.+..|....+.... ... .. ...+..++.+..
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~--~la---------------sG----------------~~~~~~~ipa~g 86 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGR--EIG---------------KG----------------KIPDPGSLKAKD 86 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSS--CEE---------------EE----------------EEEECCCCSSSS
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCE--EEE---------------EE----------------ecCCCcEECCCC
Confidence 588999999999999999999987642221 111 00 123678888888
Q ss_pred eEEEEEEEEe
Q 006351 115 TILVQLMVTP 124 (649)
Q Consensus 115 tk~v~L~v~P 124 (649)
+.++.+.++-
T Consensus 87 ~~~v~vpv~v 96 (151)
T 1xo8_A 87 MTALDIPVVV 96 (151)
T ss_dssp EEEEEECCCE
T ss_pred cEEEEEEEEE
Confidence 8888876654
No 47
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=28.89 E-value=45 Score=30.61 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=31.0
Q ss_pred EEEEEeccc--ccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 204 VLELKNQSD--FSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 204 ~l~L~N~g~--~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
.|.|.|.|. .+|.+-.|++ ..++. ..+|.||.+..|+||++++ ||-+|.
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r---~v~g~----~~~y~FP~~~~L~pg~~Vt--Vwa~g~ 89 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIR---KIGDT----SVSYKYTSRYVLKAGQTVT--IWAANA 89 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEE---EETTE----EEEEECCTTCEECTTCEEE--EEETTS
T ss_pred EEEEEECCCCceecCCcEEEE---EeCCC----ceEEEcCCCcEECCCCEEE--EEECCC
Confidence 367799984 4455555540 11211 2369999899999999865 576554
No 48
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=27.23 E-value=2.2e+02 Score=24.47 Aligned_cols=56 Identities=11% Similarity=0.212 Sum_probs=41.8
Q ss_pred CceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCCcccccCCccc
Q 006351 490 SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLE 569 (649)
Q Consensus 490 ~~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~ 569 (649)
+.-+=--+|.|.|.+..+..+.|...+..
T Consensus 29 G~I~N~Ytlki~Nkt~~~~~~~l~v~g~~--------------------------------------------------- 57 (118)
T 2r39_A 29 GEVENTYTLKVINKTQQVQEYNLDVKGLN--------------------------------------------------- 57 (118)
T ss_dssp CSEEEEEEEEEEECSSSCEEEEEEEESCS---------------------------------------------------
T ss_pred CeEEEEEEEEEEECCCCCEEEEEEEeCCc---------------------------------------------------
Confidence 55566679999999998888888774310
Q ss_pred ccCceEEecccceeEEeCCCceEEEEeEEEEe
Q 006351 570 SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLF 601 (649)
Q Consensus 570 ~~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~~ 601 (649)
.+.|.|.. .+.|+||++..+++.+.+.
T Consensus 58 ---~l~~~g~~--~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 58 ---DVSWYGKQ--TIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp ---SCEEESCC--EEEECTTCEEEEEEEEEEC
T ss_pred ---ccEEeCCC--cEEECCCCEEEEEEEEEEC
Confidence 03577743 5999999999999988773
No 49
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=26.91 E-value=1.5e+02 Score=37.01 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=47.6
Q ss_pred eEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 006351 29 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 108 (649)
Q Consensus 29 ~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i 108 (649)
-++.||.+.+.+.+.|=++-++.+ ..++..+++ ... .... . ....+
T Consensus 778 sv~rGE~~~l~~~V~N~~~~~~~v-----~V~l~~~~~-~~~------------~~~~-----------~-----~~~~v 823 (1451)
T 4acq_A 778 SVIRGEAFTLKATVLNYLPKCIRV-----SVQLEASPA-FLA------------VPVE-----------K-----EQAPH 823 (1451)
T ss_dssp EEESSSCEEEEEEEEECSSSCEEE-----EEEECCCTT-EEE------------EESC-----------S-----CCCCE
T ss_pred eEecCCEEEEEEEEEeccCccEEE-----EEEEEcCCC-eEe------------ecCC-----------C-----CceEE
Confidence 466899999999999998876654 222222211 100 0000 0 02578
Q ss_pred EECCCceEEEEEEEEecceEEEEEE
Q 006351 109 SLGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 109 ~L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
.|.+++++++.+.++|.+.|.+.|.
T Consensus 824 ~l~~~~~~~v~f~v~p~~~G~~~i~ 848 (1451)
T 4acq_A 824 CICANGRQTVSWAVTPKSLGNVNFT 848 (1451)
T ss_dssp EECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EECCCCeEEEEEEEEECccceEEEE
Confidence 9999999999999999999987654
No 50
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=25.43 E-value=1.8e+02 Score=28.32 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=54.2
Q ss_pred eecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeee-ecCCCcccCCCCeEEEEEEEEec-C-CCceEEEEE
Q 006351 195 AYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVF-SFPEGISIQGETPLLWPLWYRAA-V-PGKISLSIT 271 (649)
Q Consensus 195 ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf-~lp~~~~L~pGes~~iplwlra~-~-~G~~~l~lL 271 (649)
+|.|.-+.+.|.|+|.|..| +++.-++.-++.++.....| ..|--..|+||+...+-|...+. - ..+.++.+|
T Consensus 22 Iy~~~~k~~sl~l~N~~~~p----~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~~LP~DRESlf~l 97 (218)
T 4ay0_A 22 IYPLDAAGVMVSVKNTQDYP----VLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWL 97 (218)
T ss_dssp EEETTCSCEEEEEECCSSSC----EEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSCCCCSSSCEEEEE
T ss_pred EECCCCcEEEEEEEcCCCCC----EEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCCCCCcCcEEEEEE
Confidence 78888889999999999876 23322343343333333223 23435689999999999977765 2 467788888
Q ss_pred EEEecCC
Q 006351 272 IYYEMGD 278 (649)
Q Consensus 272 fyYe~~~ 278 (649)
-.+|-+.
T Consensus 98 nv~eIPp 104 (218)
T 4ay0_A 98 CVKGIPP 104 (218)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 8888764
No 51
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=25.25 E-value=1.5e+02 Score=31.68 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=44.5
Q ss_pred ceecceEEEEEEEEEecccccccceEEe-ee---eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEe
Q 006351 194 RAYAGDLRHLVLELKNQSDFSVKKMTNA-EQ---SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA 260 (649)
Q Consensus 194 ~ll~GEi~~~~l~L~N~g~~pv~~l~v~-~P---~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra 260 (649)
.-+.||...+.+++.|.|+.++++|++. .. ++.+.+..- ...+...-.+..+.||++..--+.|..
T Consensus 204 ~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~~-k~~Va~~e~~e~V~pgst~~k~~~L~P 273 (392)
T 1suj_A 204 IYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKY-VKTVCAEETNDTVAANSTLSKTFSVTP 273 (392)
T ss_dssp EEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCCEE-EEEEEEEECCCCBCTTEEEEEEEEECC
T ss_pred cccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCCcE-EEEEEEEecCCCcCCCCEEEEEEEEec
Confidence 4789999999999999999999999988 33 433332110 111222212347899999777777663
No 52
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=23.94 E-value=1.1e+02 Score=32.00 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.9
Q ss_pred EecccceeEEeCCCceEEEEeEEEEeecee
Q 006351 576 WSGSSASSVRLQPMSTTDIAMKVCLFSPGT 605 (649)
Q Consensus 576 w~G~~~~~~~l~p~e~~~v~l~~~~~~pGv 605 (649)
|..-.-....|.||++..|.+.+++-..-+
T Consensus 79 wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~ 108 (366)
T 3qis_A 79 WLRAEPFEGYLEPNETVDISLDVYVSKDSV 108 (366)
T ss_dssp TEEEESCEEEECTTCEEEEEEEECBCTTTH
T ss_pred cEEEeCCccEECCCCEEEEEEEEEECHHHH
Confidence 554556688999999999999999987433
No 53
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=23.90 E-value=81 Score=29.17 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=34.6
Q ss_pred ecceEEEEEEEEEeccc--ccccceEEeeeeeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEec
Q 006351 196 YAGDLRHLVLELKNQSD--FSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 261 (649)
Q Consensus 196 l~GEi~~~~l~L~N~g~--~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~ 261 (649)
+.||. |.|.|.|. .+|.+-.|++ .+++ ....+|.||.+..|+||++++ ||-++.
T Consensus 47 ~~Gef----V~L~N~s~~~~~L~GW~L~r---~vdg---~~~~~y~Fp~~~~L~pg~tVt--Iws~~~ 102 (151)
T 1ufg_A 47 EEGKF----VRLRNKSNEDQSMGNWQIRR---QNGD---DPLMTYRFPPKFTLKAGQVVT--IWASGA 102 (151)
T ss_dssp TTSSE----EEEEECSSSCEECSSCEEEE---EETT---SCCEEEECCTTCEECTTCEEE--EEESSS
T ss_pred CCCCE----EEEEECCCCccccCCCEEEE---ecCC---CccEEEEECCCcEECCCCEEE--EEeCCC
Confidence 55664 77899994 3455555541 0111 123689999889999999854 676543
No 54
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=23.75 E-value=1e+02 Score=32.33 Aligned_cols=76 Identities=11% Similarity=-0.055 Sum_probs=45.0
Q ss_pred cCCCeEEEEEccCCc-ceecceEEEEEEEEEecccccccceEEeeeeeecCCC--CCC-CCeeee-cCCCcccCCCCeEE
Q 006351 179 KSLPKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNF--NKM-PQAVFS-FPEGISIQGETPLL 253 (649)
Q Consensus 179 ~~~P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~--~~~-~~~vf~-lp~~~~L~pGes~~ 253 (649)
..+|.+++.-..+.- .+.-||.+.-.|+|+|.|.+|++= .|-.+ +.. ...-+. -|....|.||++..
T Consensus 25 ~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f--------~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~ 96 (366)
T 3qis_A 25 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHF--------SFIPKLNDSQYCKPWLRAEPFEGYLEPNETVD 96 (366)
T ss_dssp ---CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEE--------EEECCTTCSSSSCTTEEEESCEEEECTTCEEE
T ss_pred ccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEE--------EEEeCCCCCCCCCCcEEEeCCccEECCCCEEE
Confidence 345666553222221 367788899999999999997652 22111 100 000011 25567999999999
Q ss_pred EEEEEEecC
Q 006351 254 WPLWYRAAV 262 (649)
Q Consensus 254 iplwlra~~ 262 (649)
+.+.+....
T Consensus 97 i~l~~~v~~ 105 (366)
T 3qis_A 97 ISLDVYVSK 105 (366)
T ss_dssp EEEEECBCT
T ss_pred EEEEEEECH
Confidence 999887653
No 55
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=22.74 E-value=2.7e+02 Score=31.82 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=54.6
Q ss_pred cCCcceecceEEEEEEEEEeccccccc-ceEEe-ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCCCce
Q 006351 190 PLPERAYAGDLRHLVLELKNQSDFSVK-KMTNA-EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKI 266 (649)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~g~~pv~-~l~v~-~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~G~~ 266 (649)
.+|-.+..||...+.+.+.|....+++ .+.|. .+ +...+... . .. ...|.+|++..+++.|++...|..
T Consensus 159 ~lP~~v~~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~-~-~~------~~~v~a~~~~~v~f~i~~~~~G~~ 230 (767)
T 4fxk_B 159 RLPMSVRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGG-L-AQ------QVLVPAGSARPVAFSVVPTAAAAV 230 (767)
T ss_dssp CCCSCEETTCEEEECCEEEECSSSCEEEEEEECCCTTEECSSSSC-C-CE------EEEECSSCEEECCEEEEECSCSEE
T ss_pred CCCCeeccCCEEEEEEEEEECCCCCEEEEEEEEecCCeEEecCCc-e-eE------EEEEcCCCeEEEEEEEEECccCcE
Confidence 678899999999999999999876654 33333 22 32222211 1 11 136789999999999999899998
Q ss_pred EEEEEEEE
Q 006351 267 SLSITIYY 274 (649)
Q Consensus 267 ~l~lLfyY 274 (649)
.+.+...-
T Consensus 231 ~i~v~A~~ 238 (767)
T 4fxk_B 231 SLKVVARG 238 (767)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 88876654
No 56
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=22.39 E-value=9.5e+02 Score=29.21 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=53.8
Q ss_pred cCCcceecceEEEEEEEEEecccccccceEEe---e-eeeec-CCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCCC
Q 006351 190 PLPERAYAGDLRHLVLELKNQSDFSVKKMTNA---E-QSVAG-GNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPG 264 (649)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~---~-P~~~~-g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~G 264 (649)
.+|..+..||...+.+.+.|....+++ +.+. . +-+.+ +.........- ...|.+|++..+++.|++...|
T Consensus 671 ~lP~~v~~Gd~~~l~~~v~N~~~~~~~-v~v~l~~~~~~~~~~~~~~~~~~~~~----~v~v~~~~~~~v~f~i~~~~~G 745 (1325)
T 2pn5_A 671 NLPYSIKRGEAVVLQFTLFNNLGAEYI-ADVTLYNVANQTEFVGRPNTDLSYTK----SVSVPPKVGVPISFLIKARKLG 745 (1325)
T ss_dssp ECCSEEETTCEEEEEEEEEECSSSCEE-EEEEEECGGGCEEETTSCTTCCEEEE----EEEECTTCCEEEEEEEEECSSE
T ss_pred CCCcEEEcCCEEEEEEEEEeCCCCcEE-EEEEEeecCCceEEeccCCCCCcceE----EEEECCCCeEEEEEEEEEcccc
Confidence 589999999999999999999877653 4444 1 22222 22111110111 2367899999999999988889
Q ss_pred ceEEEEEEE
Q 006351 265 KISLSITIY 273 (649)
Q Consensus 265 ~~~l~lLfy 273 (649)
...+.+-..
T Consensus 746 ~~~i~v~a~ 754 (1325)
T 2pn5_A 746 EMAVRVKAS 754 (1325)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 888887664
No 57
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=21.98 E-value=3.3e+02 Score=33.88 Aligned_cols=77 Identities=9% Similarity=-0.005 Sum_probs=55.0
Q ss_pred cCCcceecceEEEEEEEEEeccccccc-ceEEe-ee-eeecCCCCCCCCeeeecCCCcccCCCCeEEEEEEEEecCCCce
Q 006351 190 PLPERAYAGDLRHLVLELKNQSDFSVK-KMTNA-EQ-SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKI 266 (649)
Q Consensus 190 ~lP~~ll~GEi~~~~l~L~N~g~~pv~-~l~v~-~P-~~~~g~~~~~~~~vf~lp~~~~L~pGes~~iplwlra~~~G~~ 266 (649)
.+|..+..||...+.+.+.|....+++ .+.+. .+ +...+... .. ....|.+|++..+++.+++...|..
T Consensus 774 ~LP~sv~rGE~~~l~~~V~N~~~~~~~v~V~l~~~~~~~~~~~~~-~~-------~~v~l~~~~~~~v~f~v~p~~~G~~ 845 (1451)
T 4acq_A 774 TMPYSVIRGEAFTLKATVLNYLPKCIRVSVQLEASPAFLAVPVEK-EQ-------APHCICANGRQTVSWAVTPKSLGNV 845 (1451)
T ss_dssp ECCSEEESSSCEEEEEEEEECSSSCEEEEEEECCCTTEEEEESCS-CC-------CCEEECTTEEEEEEEEEEECSCEEE
T ss_pred cCCceEecCCEEEEEEEEEeccCccEEEEEEEEcCCCeEeecCCC-Cc-------eEEEECCCCeEEEEEEEEECccceE
Confidence 689999999999999999999875543 33333 33 32222111 11 1246889999999999998789999
Q ss_pred EEEEEEEE
Q 006351 267 SLSITIYY 274 (649)
Q Consensus 267 ~l~lLfyY 274 (649)
.+.+-..-
T Consensus 846 ~i~v~a~~ 853 (1451)
T 4acq_A 846 NFTVSAEA 853 (1451)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88887754
No 58
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=21.80 E-value=3.2e+02 Score=34.40 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred EEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEE
Q 006351 30 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDIS 109 (649)
Q Consensus 30 ~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~i~ 109 (649)
++.||.+.+.+.+.|=++. ..+....++...++.........+.. ..+.
T Consensus 838 v~~GD~~~i~~~V~N~~~~----~~~~v~v~l~~~~~~~~~~~~~~~~~---------------------------~~v~ 886 (1661)
T 2b39_A 838 VVRNEQVEIRAILYNYREA----ENLKVRVELLYNPAFCSLATAKKRHQ---------------------------QTIT 886 (1661)
T ss_dssp EESSCEEEEEEEEEECCTT----CCEEEEEEECCCTTEECSSCSSCCCE---------------------------EEEE
T ss_pred EEeCCEEEEEEEEEcCCCC----ccEEEEEEEcCCCCeEeecCCCCcce---------------------------EEEE
Q ss_pred ECCCceEEEEEEEEecceEEEEEE
Q 006351 110 LGGAETILVQLMVTPKVEGILKIV 133 (649)
Q Consensus 110 L~p~etk~v~L~v~P~~~G~L~I~ 133 (649)
|.+++++.|.+.++|.+.|.+.|.
T Consensus 887 v~a~~~~~v~f~i~p~~~G~~~i~ 910 (1661)
T 2b39_A 887 IPARSSVAVPYVIVPLKIGLHEVE 910 (1661)
T ss_dssp ECTTCEEEEEEEEEECSCEEEEEE
T ss_pred ECCCCcEEEEEEEEEcccCeEEEE
No 59
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=20.74 E-value=3.8e+02 Score=23.37 Aligned_cols=70 Identities=4% Similarity=0.111 Sum_probs=48.8
Q ss_pred EEEEEEEEEecccccccceEEe--ee-eeecCCCCCCCCeeeecCCCcccCC--CCeEEEEEEEEecCCCceEEEEEEEE
Q 006351 200 LRHLVLELKNQSDFSVKKMTNA--EQ-SVAGGNFNKMPQAVFSFPEGISIQG--ETPLLWPLWYRAAVPGKISLSITIYY 274 (649)
Q Consensus 200 i~~~~l~L~N~g~~pv~~l~v~--~P-~~~~g~~~~~~~~vf~lp~~~~L~p--Ges~~iplwlra~~~G~~~l~lLfyY 274 (649)
...+.+.+.|.+..|++++.+. =| .+.+. +.-|++..|.| |...+=-|.|.++......+++=+.|
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~---------L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~klsY 100 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQ---------LLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLTF 100 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEE---------ECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEE---------ecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEEEE
Confidence 3568899999999999999887 33 21111 11245567888 77777778888886556778888888
Q ss_pred ecCC
Q 006351 275 EMGD 278 (649)
Q Consensus 275 e~~~ 278 (649)
...+
T Consensus 101 ~~~g 104 (122)
T 3zy7_A 101 NWNG 104 (122)
T ss_dssp EETT
T ss_pred EECC
Confidence 7654
No 60
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=20.52 E-value=4.3e+02 Score=23.07 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=48.9
Q ss_pred ceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 006351 28 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 107 (649)
Q Consensus 28 ~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 107 (649)
.-++.||.+.+.+.+.|=|+-.+.+. +.|. .+.+ ... .+ . ...+
T Consensus 16 ysv~rgE~~~~~~~V~nyl~~~~~v~-v~L~----~s~~-~~~----------------~~-------------~-~~~t 59 (118)
T 3es6_B 16 KSVRPNDEVTAVLAVQTELKECMVVK-TYLI----SSIP-LQG----------------AF-------------N-YKYT 59 (118)
T ss_dssp SEECSSCCEEEEEEEEECCSSCEEEE-EEEE----ESSC-CCS----------------GG-------------G-CEEE
T ss_pred ceEecCCEEEEEEEEEecccceEEEE-EEec----CCcC-EEc----------------cC-------------C-Cccc
Confidence 34678999999999999999888774 4443 2211 110 00 0 1256
Q ss_pred EEECCCceEEEEEEEEecceEEEEEEEEEEE
Q 006351 108 ISLGGAETILVQLMVTPKVEGILKIVGVRWR 138 (649)
Q Consensus 108 i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~ 138 (649)
.-|.+++.+++...++|. |.+.|+....-
T Consensus 60 ~Clc~~~~~t~~W~i~~l--g~vniTvsAea 88 (118)
T 3es6_B 60 ACLCDDNPKTFYWDFYTN--RTVQIAAVVDV 88 (118)
T ss_dssp EEECSSSCEEEEEEECCS--SCEEEEEEEEE
T ss_pred EEecCCCceEEEEEEEeC--CeEEEEEEEEE
Confidence 779999999999999885 55555544443
Done!