Your job contains 1 sequence.
>006352
MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT
GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD
IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ
LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM
GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV
DALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLS
SSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIK
SSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQS
EEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSD
LSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDG
NKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006352
(649 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1355322 - symbol:Exosc10 "exosome component 10" s... 589 6.8e-63 2
UNIPROTKB|E1C525 - symbol:EXOSC10 "Uncharacterized protei... 605 1.8e-62 2
RGD|2323986 - symbol:LOC100366273 "rCG30986-like" species... 575 7.0e-61 2
UNIPROTKB|D4A1X2 - symbol:LOC100366273 "Protein LOC100366... 575 1.2e-60 2
UNIPROTKB|Q01780 - symbol:EXOSC10 "Exosome component 10" ... 578 6.2e-60 2
UNIPROTKB|F1PI20 - symbol:EXOSC10 "Uncharacterized protei... 588 1.2e-56 1
UNIPROTKB|A7E323 - symbol:EXOSC10 "Uncharacterized protei... 583 1.2e-56 1
UNIPROTKB|B4DKG8 - symbol:EXOSC10 "Exosome component 10" ... 578 4.2e-56 1
UNIPROTKB|F1RHR9 - symbol:EXOSC10 "Uncharacterized protei... 575 2.7e-55 1
ZFIN|ZDB-GENE-040426-781 - symbol:exosc10 "exosome compon... 574 4.0e-55 1
UNIPROTKB|E1BMZ5 - symbol:EXOSC10 "Uncharacterized protei... 570 1.0e-54 1
DICTYBASE|DDB_G0271572 - symbol:exosc10 "exosome componen... 523 1.2e-52 3
POMBASE|SPAC1F3.01 - symbol:rrp6 "exosome 3'-5' exoribonu... 485 1.4e-47 2
FB|FBgn0038269 - symbol:Rrp6 "Rrp6" species:7227 "Drosoph... 481 1.2e-46 2
TAIR|locus:504955936 - symbol:AT2G32415 species:3702 "Ara... 470 8.8e-44 1
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 463 1.1e-43 2
ASPGD|ASPL0000094155 - symbol:AN11773 species:162425 "Eme... 452 3.8e-40 1
ASPGD|ASPL0000095540 - symbol:AN11774 species:162425 "Eme... 452 3.8e-40 1
UNIPROTKB|Q95Z10 - symbol:RRP6 "Rrp6p homologue" species:... 442 1.1e-39 1
SGD|S000005527 - symbol:RRP6 "Nuclear exosome exonuclease... 422 4.1e-37 1
CGD|CAL0000608 - symbol:RRP6 species:5476 "Candida albica... 383 9.5e-33 2
UNIPROTKB|Q59MB4 - symbol:RRP6 "Likely nuclear exosome co... 383 9.5e-33 2
TIGR_CMR|GSU_0443 - symbol:GSU_0443 "ribonuclease D, puta... 206 1.2e-13 1
TIGR_CMR|APH_0137 - symbol:APH_0137 "putative ribonucleas... 168 2.2e-09 1
TIGR_CMR|SPO_2167 - symbol:SPO_2167 "ribonuclease D" spec... 159 2.2e-08 1
TIGR_CMR|APH_1098 - symbol:APH_1098 "3''-5'' exonuclease ... 145 2.9e-08 1
UNIPROTKB|Q9KQL4 - symbol:rnd "Ribonuclease D" species:24... 155 6.0e-08 1
TIGR_CMR|VC_1984 - symbol:VC_1984 "ribonuclease D" specie... 155 6.0e-08 1
TIGR_CMR|ECH_0300 - symbol:ECH_0300 "putative ribonucleas... 143 1.3e-06 1
TIGR_CMR|NSE_0529 - symbol:NSE_0529 "3'-5' exonuclease fa... 130 4.9e-06 1
UNIPROTKB|O07183 - symbol:MT2755 "CONSERVED HYPOTHETICAL ... 134 1.6e-05 1
UNIPROTKB|P09155 - symbol:rnd "RNase D" species:83333 "Es... 131 2.6e-05 1
TIGR_CMR|SO_2580 - symbol:SO_2580 "ribonuclease D" specie... 123 0.00019 1
TIGR_CMR|ECH_1011 - symbol:ECH_1011 "3'-5' exonuclease fa... 116 0.00025 1
TIGR_CMR|SPO_0083 - symbol:SPO_0083 "exonuclease, putativ... 115 0.00033 1
TIGR_CMR|CPS_3518 - symbol:CPS_3518 "ribonuclease D" spec... 117 0.00092 1
>MGI|MGI:1355322 [details] [associations]
symbol:Exosc10 "exosome component 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004532 "exoribonuclease activity" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=ISO] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071034 "CUT catabolic
process" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
[GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 MGI:MGI:1355322 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
GO:GO:0008408 GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819
GO:GO:0009048 GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394
eggNOG:COG0349 HOGENOM:HOG000001579 HOVERGEN:HBG051524 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P ChiTaRS:EXOSC10 GO:GO:0004532
GO:GO:0071048 EMBL:AF091392 EMBL:AF091505 EMBL:AF091506
EMBL:AF092074 EMBL:AF092075 EMBL:AF092076 EMBL:AF092077
EMBL:AF092078 EMBL:AF092079 EMBL:AF092080 EMBL:AF092081
EMBL:AF092082 EMBL:AF092083 EMBL:AL606969 EMBL:AL713995
IPI:IPI00342382 RefSeq:NP_057908.2 UniGene:Mm.266635
ProteinModelPortal:P56960 SMR:P56960 STRING:P56960
PhosphoSite:P56960 PaxDb:P56960 PRIDE:P56960
Ensembl:ENSMUST00000017408 GeneID:50912 KEGG:mmu:50912
GeneTree:ENSGT00390000015408 InParanoid:B1ARY9 NextBio:307899
Bgee:P56960 CleanEx:MM_EXOSC10 Genevestigator:P56960
GermOnline:ENSMUSG00000017264 Uniprot:P56960
Length = 887
Score = 589 (212.4 bits), Expect = 6.8e-63, Sum P(2) = 6.8e-63
Identities = 115/219 (52%), Positives = 154/219 (70%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 79 (32.9 bits), Expect = 6.8e-63, Sum P(2) = 6.8e-63
Identities = 54/207 (26%), Positives = 79/207 (38%)
Query: 436 QLKPVDVMKSEPNK-----PDLPFPSSFGSGEQTKP---IIEESNRVTVVSQ---SEEPA 484
Q K ++M+S N P L + + P I E SNR + SQ +EP
Sbjct: 678 QKKAQNIMQSFENPFRMFLPSLEHKAHISQAAKFDPSSKIYEISNRWKLASQVQVQKEPK 737
Query: 485 PAARPXXXXXXXXXXXXXXXXQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTS 544
A + G LE A + +ALE + + SDL T
Sbjct: 738 EATKKKVAEQTAAREEAKEEAA-AGVLEQAIPVRQQ----AALENATKKRERATSDLRTI 792
Query: 545 FQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEK-SAGVDGNKR 603
Q+ K K + +P G P+D+ + + F D+K K S+ D NK
Sbjct: 793 EQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYSQSDFRA-FAGDSKSKPSSQFDPNKL 847
Query: 604 KPVNSGDKKKVSAVDQAQKDDGTKELS 630
P SG KK V A + ++ G K +S
Sbjct: 848 AP--SG-KKGVGA-KKCKQSVGNKSMS 870
>UNIPROTKB|E1C525 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591
OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:AADN02040751 IPI:IPI00588624
RefSeq:NP_001012748.1 UniGene:Gga.2286 ProteinModelPortal:E1C525
Ensembl:ENSGALT00000004879 GeneID:419454 KEGG:gga:419454
NextBio:20822508 Uniprot:E1C525
Length = 910
Score = 605 (218.0 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 117/219 (53%), Positives = 156/219 (71%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMFDT
Sbjct: 349 ISTRTEDFIIDTLELRSDMS-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDT 407
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L ++SL++LL +C V+A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD
Sbjct: 408 HQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYD 467
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN QQ
Sbjct: 468 KMR---EALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQ 524
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LA L WRD AR +DES GYVLPN L++IA++LP
Sbjct: 525 LAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELP 563
Score = 59 (25.8 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 556 RKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS 615
++P ++ EE Q PFD+ ++ F +K K + V + + V +G KK +
Sbjct: 823 KRPKASQQPEELEAPKQFTPFDYSKFNFKV-FAGSSKSKQS-VQFDPARQVYTG--KKFA 878
Query: 616 AVDQAQKDDGTKELS 630
++ Q+ G + +S
Sbjct: 879 GANKLQQPAGNRSMS 893
>RGD|2323986 [details] [associations]
symbol:LOC100366273 "rCG30986-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 RGD:2323986 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 GeneTree:ENSGT00390000015408 IPI:IPI00211602
ProteinModelPortal:D4A2C3 Ensembl:ENSRNOT00000014593
ArrayExpress:D4A2C3 Uniprot:D4A2C3
Length = 859
Score = 575 (207.5 bits), Expect = 7.0e-61, Sum P(2) = 7.0e-61
Identities = 114/219 (52%), Positives = 153/219 (69%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED +VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTED-IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 388
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 389 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 448
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 449 RMRLELW---ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 505
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 506 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 544
Score = 73 (30.8 bits), Expect = 7.0e-61, Sum P(2) = 7.0e-61
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 525 SALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQ 584
+ALE + + SDL T Q+ K K + +P G P+D+ Q
Sbjct: 745 AALENATKKRERATSDLRTIEQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYS----Q 796
Query: 585 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ--GRRRSAFPATG 642
+FG A + +K KP + D KV+ +K G K+ Q G + +FPA G
Sbjct: 797 SDFGAFAGD-------SKSKPSSQFDPNKVAP--SGKKCFGAKKFKQSVGNKSMSFPA-G 846
Query: 643 NRSATFR 649
FR
Sbjct: 847 KSDRGFR 853
>UNIPROTKB|D4A1X2 [details] [associations]
symbol:LOC100366273 "Protein LOC100366273" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
RGD:2323986 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF
OrthoDB:EOG4X6C7P GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 IPI:IPI00359630 PRIDE:D4A1X2
Ensembl:ENSRNOT00000014629 ArrayExpress:D4A1X2 Uniprot:D4A1X2
Length = 884
Score = 575 (207.5 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 114/219 (52%), Positives = 153/219 (69%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED +VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTED-IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 388
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 389 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 448
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 449 RMRLELW---ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 505
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 506 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 544
Score = 73 (30.8 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 525 SALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQ 584
+ALE + + SDL T Q+ K K + +P G P+D+ Q
Sbjct: 770 AALENATKKRERATSDLRTIEQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYS----Q 821
Query: 585 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQ--GRRRSAFPATG 642
+FG A + +K KP + D KV+ +K G K+ Q G + +FPA G
Sbjct: 822 SDFGAFAGD-------SKSKPSSQFDPNKVAP--SGKKCFGAKKFKQSVGNKSMSFPA-G 871
Query: 643 NRSATFR 649
FR
Sbjct: 872 KSDRGFR 878
>UNIPROTKB|Q01780 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IMP] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0071048 "nuclear retention of unspliced
pre-mRNA at the site of transcription" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 EMBL:CH471130
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
EMBL:AJ300188 GO:GO:0008408 GO:GO:0035327 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460 GO:GO:0000176
GO:GO:0071034 EMBL:X66113 EMBL:L01457 EMBL:AL109811 EMBL:BC039901
EMBL:BC073788 IPI:IPI00009464 IPI:IPI00220336 PIR:A43920 PIR:JH0796
RefSeq:NP_001001998.1 RefSeq:NP_002676.1 UniGene:Hs.632368 PDB:2CPR
PDB:3SAF PDB:3SAG PDB:3SAH PDBsum:2CPR PDBsum:3SAF PDBsum:3SAG
PDBsum:3SAH ProteinModelPortal:Q01780 SMR:Q01780 IntAct:Q01780
MINT:MINT-1143843 STRING:Q01780 PhosphoSite:Q01780 DMDM:8928564
SWISS-2DPAGE:Q01780 PaxDb:Q01780 PRIDE:Q01780 DNASU:5394
Ensembl:ENST00000304457 Ensembl:ENST00000376936 GeneID:5394
KEGG:hsa:5394 UCSC:uc001asa.3 UCSC:uc001asb.3 CTD:5394
GeneCards:GC01M011126 HGNC:HGNC:9138 HPA:HPA028470 HPA:HPA028484
MIM:605960 neXtProt:NX_Q01780 PharmGKB:PA33464 eggNOG:COG0349
HOGENOM:HOG000001579 HOVERGEN:HBG051524 InParanoid:Q01780 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P PhylomeDB:Q01780 ChiTaRS:EXOSC10
EvolutionaryTrace:Q01780 GenomeRNAi:5394 NextBio:20912
ArrayExpress:Q01780 Bgee:Q01780 CleanEx:HS_EXOSC10
Genevestigator:Q01780 GermOnline:ENSG00000171824 GO:GO:0004532
GO:GO:0071048 Uniprot:Q01780
Length = 885
Score = 578 (208.5 bits), Expect = 6.2e-60, Sum P(2) = 6.2e-60
Identities = 113/219 (51%), Positives = 152/219 (69%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 63 (27.2 bits), Expect = 6.2e-60, Sum P(2) = 6.2e-60
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 555 NRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKV 614
++KP PE E+ + P+D+ + + G + S+ D NK+ P SG KK
Sbjct: 802 SKKPKDPEPPEK-----EFTPYDYSQSDFKAFAGNSKSKVSSQFDPNKQTP--SG--KKC 852
Query: 615 SAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 649
A + ++ G K +S FP TG FR
Sbjct: 853 IAAKKIKQSVGNKSMS-------FP-TGKSDRGFR 879
>UNIPROTKB|F1PI20 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 OMA:GNKSMSF
GeneTree:ENSGT00390000015408 EMBL:AAEX03001937
Ensembl:ENSCAFT00000026485 Uniprot:F1PI20
Length = 908
Score = 588 (212.0 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 117/219 (53%), Positives = 152/219 (69%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 353 ISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDT 411
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 412 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 471
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L V++RS D+C + + K L ++ SYL +Y Q LN QQ
Sbjct: 472 KMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQ 528
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 529 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 567
>UNIPROTKB|A7E323 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 CTD:5394 eggNOG:COG0349 HOGENOM:HOG000001579
HOVERGEN:HBG051524 KO:K12591 OrthoDB:EOG4X6C7P
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 EMBL:BC151674
IPI:IPI00904680 RefSeq:NP_001095656.1 UniGene:Bt.59475 SMR:A7E323
STRING:A7E323 Ensembl:ENSBTAT00000057296 GeneID:535340
KEGG:bta:535340 NextBio:20876706 Uniprot:A7E323
Length = 702
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 115/219 (52%), Positives = 152/219 (69%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>UNIPROTKB|B4DKG8 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 EMBL:AL109811 UniGene:Hs.632368 HGNC:HGNC:9138
HOVERGEN:HBG051524 ChiTaRS:EXOSC10 EMBL:AK296559 IPI:IPI01010048
SMR:B4DKG8 STRING:B4DKG8 Ensembl:ENST00000544779 Uniprot:B4DKG8
Length = 679
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 113/219 (51%), Positives = 152/219 (69%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>UNIPROTKB|F1RHR9 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591 OMA:GNKSMSF
GO:GO:0004532 GO:GO:0071048 GeneTree:ENSGT00390000015408
EMBL:CU694468 RefSeq:XP_003127631.2 UniGene:Ssc.23524
Ensembl:ENSSSCT00000003785 GeneID:100511264 KEGG:ssc:100511264
Uniprot:F1RHR9
Length = 886
Score = 575 (207.5 bits), Expect = 2.7e-55, P = 2.7e-55
Identities = 114/219 (52%), Positives = 150/219 (68%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLALWERGNEQP---AQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>ZFIN|ZDB-GENE-040426-781 [details] [associations]
symbol:exosc10 "exosome component 10" species:7955
"Danio rerio" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
ZFIN:ZDB-GENE-040426-781 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
CTD:5394 KO:K12591 OMA:GNKSMSF GeneTree:ENSGT00390000015408
EMBL:CR318666 IPI:IPI00860469 RefSeq:NP_957383.2 UniGene:Dr.75500
Ensembl:ENSDART00000137410 GeneID:394064 KEGG:dre:394064
NextBio:20815021 ArrayExpress:F1Q5Q7 Bgee:F1Q5Q7 Uniprot:F1Q5Q7
Length = 899
Score = 574 (207.1 bits), Expect = 4.0e-55, P = 4.0e-55
Identities = 116/266 (43%), Positives = 166/266 (62%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 329 ISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+YD
Sbjct: 388 HHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYD 447
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ L T + +V+ +S D+ + Y K + +E+SY+ +Y Q N QQ
Sbjct: 448 RVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQ 504
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA + WRD +AR +DESTGY+LPN +++IA +LP + + + +
Sbjct: 505 LAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQI 564
Query: 241 GPVLSIIKNSMQNAA-NFEVIAQKLK 265
+ +IK + + EV+AQK K
Sbjct: 565 NELHQLIKQARETPLLKAEVVAQKRK 590
>UNIPROTKB|E1BMZ5 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 IPI:IPI00698678
Ensembl:ENSBTAT00000003354 ArrayExpress:E1BMZ5 Uniprot:E1BMZ5
Length = 890
Score = 570 (205.7 bits), Expect = 1.0e-54, P = 1.0e-54
Identities = 115/222 (51%), Positives = 152/222 (68%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR---PLPDEMLRYAREDTHYLLY 117
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+R PLP+EML YAR+DTHYLLY
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRNPRPLPEEMLSYARDDTHYLLY 449
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
IYD M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN
Sbjct: 450 IYDKMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLN 506
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 TQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 548
>DICTYBASE|DDB_G0271572 [details] [associations]
symbol:exosc10 "exosome component 10" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00474 dictyBase:DDB_G0271572 GO:GO:0005730 GO:GO:0000166
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000006
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
RefSeq:XP_645586.2 ProteinModelPortal:Q55AW0 STRING:Q55AW0
EnsemblProtists:DDB0233752 GeneID:8618039 KEGG:ddi:DDB_G0271572
OMA:LRSHIHM ProtClustDB:CLSZ2847850 Uniprot:Q55AW0
Length = 1195
Score = 523 (189.2 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 109/244 (44%), Positives = 159/244 (65%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDF++DTL LR + L +VF +P+ KV+HG+D DI WLQRDFG+Y+ NMFDT
Sbjct: 289 ISTRSEDFLIDTLLLRSHIH-MLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDT 347
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+ SL +LL +C ++ANK+YQ ADWR+R LP+EM++YAREDTHYLLYIYD
Sbjct: 348 GQASRILEYPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYD 407
Query: 121 IMKIKLSSMPKE-------SENSDTPLT---------EVYKRSYDVCRQLYEKELLSENS 164
++ +L S + S N+ T T EV +RS ++ YEK++L +NS
Sbjct: 408 RLRNELISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDNS 467
Query: 165 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 224
+++ + QL V+ L WR+ +AR +DES Y+LPN+ ++ I ++ PT+ +
Sbjct: 468 HINFAKKLNLQYSPTQLNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQE 527
Query: 225 LRRL 228
L L
Sbjct: 528 LLTL 531
Score = 45 (20.9 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 531 KQDETMSLS-DLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLK 574
K++ ++S + LSTS S NN K K E + F LK
Sbjct: 960 KENSSISATTSLSTSPSSLLDSTNNPPKSKKDENASVTDTFSFLK 1004
Score = 44 (20.5 bits), Expect = 1.5e-52, Sum P(3) = 1.5e-52
Identities = 23/106 (21%), Positives = 39/106 (36%)
Query: 544 SFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNK 602
S QE + +N NR+ K ++ +E S + K K D N
Sbjct: 938 SMQEIYQLSNMNRRRNKEKKKLKENSSISATTSLSTSPSSLLDSTNNPPKSKK---DENA 994
Query: 603 RKPVNSGDKKKVSAVDQAQKDDGTKELSQG-RRRSAFPATGNRSAT 647
K++ ++ Q D K +SQ +++ A AT + T
Sbjct: 995 SVTDTFSFLKEIGWINNEQSADSFKPVSQQLQQQPASSATATTTTT 1040
Score = 39 (18.8 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 341 HPGEAIASENKEATHISTLSSSGQSRDLNACKSP 374
H ++ ++ N T +T +++ S +LN + P
Sbjct: 903 HSNDSTSTSNSTTTTTTTTTANTSSSNLNNNQVP 936
>POMBASE|SPAC1F3.01 [details] [associations]
symbol:rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 PomBase:SPAC1F3.01 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0071038 SUPFAM:SSF47819
GO:GO:0000176 GO:GO:0000175 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 eggNOG:COG0349 KO:K12591
PIR:T38769 RefSeq:NP_593004.2 ProteinModelPortal:Q10146
STRING:Q10146 EnsemblFungi:SPAC1F3.01.1 GeneID:2543630
KEGG:spo:SPAC1F3.01 OMA:YGIVCLM OrthoDB:EOG4SJ8P0 NextBio:20804636
Uniprot:Q10146
Length = 777
Score = 485 (175.8 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 110/295 (37%), Positives = 169/295 (57%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+FDT
Sbjct: 261 ISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDT 319
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++VL E + L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI+D
Sbjct: 320 YYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWD 379
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGA 174
++ +L S K +E + + V+ S + + YE E L + + ++ G+
Sbjct: 380 HLRNELIS--KSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGS 437
Query: 175 G--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
+ + L + L +WRD +AR +DES YVLPNR LI IA P AA + + K
Sbjct: 438 SKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQL 497
Query: 233 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNL 287
Y+ ++ +++ + + N +V + K + EV + + V S+ L
Sbjct: 498 TPIARMYVEDIVKVVQEA-EKLYNEQV--DREKSQFKEVEKQNQPLAVFSESNTL 549
Score = 40 (19.1 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 522 SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP--ERSEEPSGFLQLKPFDFE 579
+A +L K+ E + + DL + Q+ S N+++P P ER+E D E
Sbjct: 631 AANPSLNGEKKQEPIVIRDLGLNKQKRDSSKLNHKEPSNPIEERNE-----------DIE 679
Query: 580 AARKQIEFGEDAKEKSAGVDGNK 602
+ + K+K + K
Sbjct: 680 PSEASTSVSKKRKQKKKKKNSGK 702
>FB|FBgn0038269 [details] [associations]
symbol:Rrp6 "Rrp6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0071027 "nuclear RNA surveillance" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 EMBL:AE014297
GO:GO:0005730 GO:GO:0000166 GO:GO:0006378 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0010468 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0005652 GO:GO:0000176 KO:K12591 GeneTree:ENSGT00390000015408
GO:GO:0071027 RefSeq:NP_001097795.1 UniGene:Dm.7279
ProteinModelPortal:Q9VFF3 SMR:Q9VFF3 IntAct:Q9VFF3 STRING:Q9VFF3
PRIDE:Q9VFF3 EnsemblMetazoa:FBtr0113235 GeneID:41798
KEGG:dme:Dmel_CG7292 UCSC:CG7292-RB CTD:41798 FlyBase:FBgn0038269
InParanoid:Q9VFF3 OMA:FERITTN OrthoDB:EOG4THT8C PhylomeDB:Q9VFF3
GenomeRNAi:41798 NextBio:825622 ArrayExpress:Q9VFF3 Bgee:Q9VFF3
Uniprot:Q9VFF3
Length = 900
Score = 481 (174.4 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 96/219 (43%), Positives = 141/219 (64%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 314 MSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y
Sbjct: 373 HRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYG 432
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M L + + +E L VY++S DVC++ Y K + S+L + + +Q
Sbjct: 433 RMTNDL--LQQHAEPG--LLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 488
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 489 LYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
Score = 41 (19.5 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 415 KLEQIKSSVNLPFHSIFARDEQLKPVDVM-KSEPNK--PDLPFPSSFGSGEQTKPIIEES 471
+LE+I+ +LP ++ R+ ++V K E K P L P+ +Q+KP EE
Sbjct: 597 QLEEIRD--DLP--TLLKRNSTTGKLEVPNKEEVAKVDPTLAAPAMALFEKQSKPTQEEE 652
Query: 472 NR 473
R
Sbjct: 653 QR 654
>TAIR|locus:504955936 [details] [associations]
symbol:AT2G32415 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
SMART:SM00474 EMBL:CP002685 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
KO:K12591 IPI:IPI00520495 RefSeq:NP_850189.5 UniGene:At.47141
ProteinModelPortal:F4ITQ6 SMR:F4ITQ6 PRIDE:F4ITQ6
EnsemblPlants:AT2G32415.1 GeneID:817803 KEGG:ath:AT2G32415
OMA:ICVGCGE Uniprot:F4ITQ6
Length = 891
Score = 470 (170.5 bits), Expect = 8.8e-44, P = 8.8e-44
Identities = 107/239 (44%), Positives = 139/239 (58%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 162 ISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDT 220
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 221 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD 280
Query: 121 IMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL------LSENS--YLHIY 169
+ +L + +S + D L E +RS C QLY KE + +S Y H+
Sbjct: 281 SLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLN 340
Query: 170 G---LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 341 GHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 463 (168.0 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 106/298 (35%), Positives = 165/298 (55%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N+FDT
Sbjct: 321 ISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLFDT 379
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD
Sbjct: 380 YVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYD 439
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ +L + + D L VY S D+C ++Y+K + + YL + LN +Q
Sbjct: 440 MLREQLL----KQDTKD--LANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQ 492
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ L +WRDV+ARA+DES +VLPN ++ +++ LP + ++++
Sbjct: 493 DYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRT 552
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 298
G +L II + E + KE ++E ++ DT + I +V + +D
Sbjct: 553 GDILKIIVEARD--VKLEKVGLSAKERN---DAQEARGVMNDTMDH--ITSVLKSKID 603
Score = 172 (65.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 80/353 (22%), Positives = 161/353 (45%)
Query: 137 DTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
DT L VY S D+C ++Y+K + + YL + LN +Q + L +WRDV+A
Sbjct: 449 DTKDLANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQDYALTHLFKWRDVVA 507
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
RA+DES +VLPN ++ +++ LP + ++++ G +L II
Sbjct: 508 RAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKII-------- 559
Query: 256 NFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYT 315
V A+ +K E++ ++++E D + N +++D + +++ + + ++T
Sbjct: 560 ---VEARDVKLEKVGLSAKERN----DAQEARGVMN---DTMDHITSVLKSKIDF--SHT 607
Query: 316 QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIAS--ENKEATHISTLSSSGQSRDLNACKS 373
+ +E ++ + + D E++ S + E + T+ + + KS
Sbjct: 608 RFDEERGEI--YIDKTDEGMDIELKDHKESLLSVLQTAEIPSVETMIVVEKGK-----KS 660
Query: 374 PSPRVTEAAVQALK--KPNRGFGALLGNPKRKFDGEKKDKEAMKLEQ------IKSSVNL 425
+ +V + + K P + ++ +++ + E+K+ E KLE+ + S +
Sbjct: 661 DNQKVKKLLNELDKFVTPFECYQMMMITKEKQEEEERKEAERKKLEEGDLPKTMFSHHDA 720
Query: 426 PFHSIFARDEQLKPVDVMK---SEPNKPDLPFPSSFGSGEQTKPIIEESNRVT 475
P + D +L VD +K +PNKP P PS ++P I + +R T
Sbjct: 721 PINRKPEFDAKLLNVDTLKLVPDDPNKPKDPEPSPMEESS-SEPQIFDPSRFT 772
Score = 44 (20.5 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 579 EAARKQIEFGEDAKEKSAGVDGNKRK-----PVNSGDKKKV--SAVDQAQKDD 624
+AAR+ I+ E S+ D K+K PV D +K SA ++ +D+
Sbjct: 787 DAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFEKPVRDN 839
Score = 42 (19.8 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 22/103 (21%), Positives = 40/103 (38%)
Query: 367 DLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLP 426
D N K P P E ++ +P + +P R D + K+AMK ++ + N+
Sbjct: 744 DPNKPKDPEPSPME---ESSSEPQ------IFDPSRFTDDQLLSKKAMKRKRDAARRNID 794
Query: 427 FHSIFARDEQLKPVDVMKSEPNKP--DLPFPSSFGSGEQTKPI 467
+ KS+ + P D + + S + KP+
Sbjct: 795 VSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFE-KPV 836
>ASPGD|ASPL0000094155 [details] [associations]
symbol:AN11773 species:162425 "Emericella nidulans"
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071037
"nuclear polyadenylation-dependent snRNA catabolic process"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 InterPro:IPR019465
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 Pfam:PF10392 PROSITE:PS50967
SMART:SM00474 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0008408 EMBL:AACD01000084
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1 ProteinModelPortal:Q5B379
STRING:Q5B379 EnsemblFungi:CADANIAT00005393 GeneID:2872798
KEGG:ani:AN5001.2 Uniprot:Q5B379
Length = 1297
Score = 452 (164.2 bits), Expect = 3.8e-40, P = 3.8e-40
Identities = 140/446 (31%), Positives = 208/446 (46%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 ISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 333 YHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGA 174
++ +L + S D + V ++S Q YE+ + + + A
Sbjct: 393 NLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPA 449
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S +
Sbjct: 450 ILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SPMT 508
Query: 235 YIERYMGP-VLSIIKNSMQNAAN---FEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP 290
I + P +L +IK + A + + K +V + + D S P
Sbjct: 509 PIAKDRAPDLLQVIKTAKAEGATGPEWRDVYVKPTRGLPQVEAPPSPPTAQDGS----FP 564
Query: 291 NVGR-ESVDGVDALVGT-TMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGSFA 340
R E+ A++ T T P P Y+ +L P + +VAE+
Sbjct: 565 TASRYETSQFWGAVLDTQTPPLSPEYSLAASAEALRLSLPIPPMPRTVAEVQVAQPPKPT 624
Query: 341 HPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA----- 395
P A E ++ I T+ G R A P P E + Q+ ++P
Sbjct: 625 SPTPAPKKEEEDKNKIFTVKELGGPRKRKAAPQP-PAEVETSSQS-EEPQAELDLDEIPI 682
Query: 396 LLGNPKRKFDGEKKDKEAMKLEQIKS 421
+G+P K K+ +E K +Q +S
Sbjct: 683 EIGSPPSKKQRRKEKREKKKAKQNQS 708
>ASPGD|ASPL0000095540 [details] [associations]
symbol:AN11774 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
InterPro:IPR019465 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
Pfam:PF10392 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 EMBL:BN001303
GO:GO:0008408 EMBL:AACD01000084 SUPFAM:SSF47819 GO:GO:0000176
eggNOG:COG0349 KO:K12591 OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1
ProteinModelPortal:Q5B379 STRING:Q5B379
EnsemblFungi:CADANIAT00005393 GeneID:2872798 KEGG:ani:AN5001.2
Uniprot:Q5B379
Length = 1297
Score = 452 (164.2 bits), Expect = 3.8e-40, P = 3.8e-40
Identities = 140/446 (31%), Positives = 208/446 (46%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 ISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 333 YHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGA 174
++ +L + S D + V ++S Q YE+ + + + A
Sbjct: 393 NLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPA 449
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S +
Sbjct: 450 ILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SPMT 508
Query: 235 YIERYMGP-VLSIIKNSMQNAAN---FEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP 290
I + P +L +IK + A + + K +V + + D S P
Sbjct: 509 PIAKDRAPDLLQVIKTAKAEGATGPEWRDVYVKPTRGLPQVEAPPSPPTAQDGS----FP 564
Query: 291 NVGR-ESVDGVDALVGT-TMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGSFA 340
R E+ A++ T T P P Y+ +L P + +VAE+
Sbjct: 565 TASRYETSQFWGAVLDTQTPPLSPEYSLAASAEALRLSLPIPPMPRTVAEVQVAQPPKPT 624
Query: 341 HPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGA----- 395
P A E ++ I T+ G R A P P E + Q+ ++P
Sbjct: 625 SPTPAPKKEEEDKNKIFTVKELGGPRKRKAAPQP-PAEVETSSQS-EEPQAELDLDEIPI 682
Query: 396 LLGNPKRKFDGEKKDKEAMKLEQIKS 421
+G+P K K+ +E K +Q +S
Sbjct: 683 EIGSPPSKKQRRKEKREKKKAKQNQS 708
>UNIPROTKB|Q95Z10 [details] [associations]
symbol:RRP6 "Rrp6p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AJ309000
ProteinModelPortal:Q95Z10 IntAct:Q95Z10 STRING:Q95Z10
EuPathDB:TriTrypDB:Tb427.04.1630 EuPathDB:TriTrypDB:Tb927.4.1630
Uniprot:Q95Z10
Length = 703
Score = 442 (160.7 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 98/256 (38%), Positives = 151/256 (58%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S RT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FD
Sbjct: 256 ISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFD 313
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+Y
Sbjct: 314 TSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVY 372
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNA 178
D +K L + + + L V++ S + + YEK L + +Y G GL++
Sbjct: 373 DRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSS 431
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 432 PQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRT 491
Query: 239 YMGPVLSIIKNSMQNA 254
+ +L I+K+++ +A
Sbjct: 492 NVMKLLQIVKDAIGSA 507
>SGD|S000005527 [details] [associations]
symbol:RRP6 "Nuclear exosome exonuclease component"
species:4932 "Saccharomyces cerevisiae" [GO:0034475 "U4 snRNA
3'-end processing" evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA;IDA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IMP] [GO:0071049 "nuclear retention of pre-mRNA with
aberrant 3'-ends at the site of transcription" evidence=IGI]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IGI;IMP] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IMP]
[GO:0071040 "nuclear polyadenylation-dependent antisense transcript
catabolic process" evidence=IMP] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IMP] [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IMP]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI;IMP] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000973
"posttranscriptional tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0071033 "nuclear retention of
pre-mRNA at the site of transcription" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 SGD:S000005527
GO:GO:0005730 EMBL:BK006948 GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 EMBL:U43491 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0000176 GO:GO:0000175 GO:GO:0000467
GO:GO:0071042 GO:GO:0071051 eggNOG:COG0349 KO:K12591
GeneTree:ENSGT00390000015408 GO:GO:0000973 GO:GO:0034475
GO:GO:0034476 GO:GO:0071049 GO:GO:0071040 GO:GO:0034473 OMA:YGIVCLM
OrthoDB:EOG4SJ8P0 EMBL:Z74909 EMBL:AY692850 PIR:S61984
RefSeq:NP_014643.1 PDB:1M0Y PDB:2HBJ PDB:2HBK PDB:2HBL PDB:2HBM
PDBsum:1M0Y PDBsum:2HBJ PDBsum:2HBK PDBsum:2HBL PDBsum:2HBM
ProteinModelPortal:Q12149 SMR:Q12149 DIP:DIP-4560N IntAct:Q12149
MINT:MINT-534618 STRING:Q12149 PaxDb:Q12149 EnsemblFungi:YOR001W
GeneID:854162 KEGG:sce:YOR001W CYGD:YOR001w HOGENOM:HOG000196525
EvolutionaryTrace:Q12149 NextBio:975938 Genevestigator:Q12149
GermOnline:YOR001W Uniprot:Q12149
Length = 733
Score = 422 (153.6 bits), Expect = 4.1e-37, P = 4.1e-37
Identities = 109/301 (36%), Positives = 162/301 (53%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPK------ESENSDTPLTEVYK-RSYDVCRQLYEKELLSENSYLHIYGLQG 173
++ KL K ES N E K R ++Y + + S I Q
Sbjct: 375 QLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSP--IEKESPWKILMYQ- 431
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ ++ +V L +WRD+IAR DDES +V+PN+ L + PT + L
Sbjct: 432 YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVT 491
Query: 234 SYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPN 291
++ + + ++I+++++N N EE + S ET+ ++L+T S +I +
Sbjct: 492 EHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRD 544
Query: 292 V 292
V
Sbjct: 545 V 545
>CGD|CAL0000608 [details] [associations]
symbol:RRP6 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0071036 "nuclear polyadenylation-dependent snoRNA
catabolic process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071037 "nuclear polyadenylation-dependent snRNA catabolic
process" evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 383 (139.9 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 102/299 (34%), Positives = 160/299 (53%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 275 ISNREQDWIIDTLALRDDL-TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+IYD
Sbjct: 334 FHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYD 393
Query: 121 IMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ-----GA 174
+K KL K S+ D+ +V KR ++ + S + G+
Sbjct: 394 QLKNKLIDAEKLSQVLYDS--RQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGS 451
Query: 175 GLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPTTAAKLRRL 228
++ + VV L +WRD++A+ DES Y++PN+ L+ +A + P K+ +
Sbjct: 452 IVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNV 511
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQNA-AN-FEVIAQKLKEERMEVASEETEVLVLDTSS 285
+ + ++I+ +++ AN ++++ Q K++ SEE + +D +S
Sbjct: 512 SYRISDAVRINAKELANLIEKTLKETEANDWDLVDQWNKQQ-----SEEQDDNSIDAAS 565
Score = 46 (21.3 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 583 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS---AVDQAQKDDGTKELSQGRRRSAFP 639
+ I+ E+ +++ + D ++ P S + K+S A+ K+ EL R+R+ P
Sbjct: 649 EDIDEAEEEEDEQSEEDASESTPQASDEAPKISGQAALFNNDKEINPNELITLRKRNVRP 708
Query: 640 ATGNRS 645
N +
Sbjct: 709 NKKNNN 714
>UNIPROTKB|Q59MB4 [details] [associations]
symbol:RRP6 "Likely nuclear exosome component Rrp6p"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 383 (139.9 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 102/299 (34%), Positives = 160/299 (53%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 275 ISNREQDWIIDTLALRDDL-TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+IYD
Sbjct: 334 FHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYD 393
Query: 121 IMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ-----GA 174
+K KL K S+ D+ +V KR ++ + S + G+
Sbjct: 394 QLKNKLIDAEKLSQVLYDS--RQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNPKEPWGS 451
Query: 175 GLNAQQLA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPTTAAKLRRL 228
++ + VV L +WRD++A+ DES Y++PN+ L+ +A + P K+ +
Sbjct: 452 IVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLANLESPVDLNKVLNV 511
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQNA-AN-FEVIAQKLKEERMEVASEETEVLVLDTSS 285
+ + ++I+ +++ AN ++++ Q K++ SEE + +D +S
Sbjct: 512 SYRISDAVRINAKELANLIEKTLKETEANDWDLVDQWNKQQ-----SEEQDDNSIDAAS 565
Score = 46 (21.3 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 583 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS---AVDQAQKDDGTKELSQGRRRSAFP 639
+ I+ E+ +++ + D ++ P S + K+S A+ K+ EL R+R+ P
Sbjct: 649 EDIDEAEEEEDEQSEEDASESTPQASDEAPKISGQAALFNNDKEINPNELITLRKRNVRP 708
Query: 640 ATGNRS 645
N +
Sbjct: 709 NKKNNN 714
>TIGR_CMR|GSU_0443 [details] [associations]
symbol:GSU_0443 "ribonuclease D, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 Gene3D:1.10.150.80 SUPFAM:SSF47819
KO:K03684 RefSeq:NP_951502.1 ProteinModelPortal:Q74G09
GeneID:2686317 KEGG:gsu:GSU0443 PATRIC:22023634
HOGENOM:HOG000010987 OMA:LRETTFW ProtClustDB:CLSK924403
BioCyc:GSUL243231:GH27-436-MONOMER Uniprot:Q74G09
Length = 381
Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 79/268 (29%), Positives = 123/268 (45%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
+VD L + P L +F + +KV HGAD DI L RDFGI + N+FDT A ++L
Sbjct: 59 IVDPLAAP-DISP-LAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLG 116
Query: 69 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 128
L L GV +K+YQ ADW RPL M+ YA +DT L+ +Y + +L
Sbjct: 117 EREFGLAAQLRKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEE 176
Query: 129 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 188
+ + E+ R ++ E+ E +L G + ++ + LAV+ L
Sbjct: 177 KGRRGWVEEE--CELLSRV-----RVAERG--DEPFFLRFKG--ASRMDGRTLAVLEELL 225
Query: 189 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 248
+RD AR D VL T+ E+A++ P +L+ + RY +L ++
Sbjct: 226 LFRDGRARQFDVPPFKVLGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGILRAVE 285
Query: 249 NSMQNAANFEVIAQKLKEER-MEVASEE 275
A ++ A +E R ME E+
Sbjct: 286 RGCAVPAQ-QLPAYPREERRKMERGEED 312
>TIGR_CMR|APH_0137 [details] [associations]
symbol:APH_0137 "putative ribonuclease D" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
KO:K03684 HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
RefSeq:YP_504762.1 ProteinModelPortal:Q2GLI9 STRING:Q2GLI9
GeneID:3930937 KEGG:aph:APH_0137 PATRIC:20948846
BioCyc:APHA212042:GHPM-172-MONOMER Uniprot:Q2GLI9
Length = 381
Score = 168 (64.2 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 63/248 (25%), Positives = 115/248 (46%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
V+D L + + P L+E+F + KV H +D+ L F +FDT A+ + +
Sbjct: 54 VIDALAEGIDLTP-LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIFDTQIAAMLCE 112
Query: 69 LERNSLEY--LLHHFCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL +Y I++
Sbjct: 113 YHENSVGYSKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILRDI 172
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQLAVV 184
L+S + S Y D C + + +S+N + ++ A L Q+ +
Sbjct: 173 LTSKGRLSW---------YMEEMD-C--IVDS--VSDNYTTILESMECYADLTEQEANIA 218
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK--LRRLLKSKHSYIERYMGP 242
+ EWR+ +AR + + ++ R ++ I K + LR+ ++ Y++
Sbjct: 219 RSVVEWRERVARLLNINRNIIMNARDVLNITKDFIADGSDSTLRKYVREL--YLQDLPFS 276
Query: 243 VLSIIKNS 250
+ I++N+
Sbjct: 277 LTEIVENN 284
>TIGR_CMR|SPO_2167 [details] [associations]
symbol:SPO_2167 "ribonuclease D" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_167394.1 ProteinModelPortal:Q5LRG1
GeneID:3193200 KEGG:sil:SPO2167 PATRIC:23377681
HOGENOM:HOG000277561 OMA:KSKYLHK ProtClustDB:CLSK864964
Uniprot:Q5LRG1
Length = 385
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 65/226 (28%), Positives = 103/226 (45%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMFDTGQASRV 66
+VD L +++ P L +F+D + KV H A D +I W+ D G++ +FDT A+ V
Sbjct: 56 LVDPLAEGLELEP-LYTLFRDTSVVKVFHAARQDLEIFWV--DAGVFPEPLFDTQVAAMV 112
Query: 67 LKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
E+ E L+ C +K + DW RPL D YA D +L IY+ +
Sbjct: 113 CGFGEQVGYETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAAD 172
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L+ + ++ T +YD+ R E ++ I +G + LAVV
Sbjct: 173 LAKTGRSHWVAEELRTLTDPATYDI-RP--------EEAWRRIKTRTNSG---KFLAVVR 220
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL--RRLL 229
L ++R+ A+ ++ V + LIE+A P T A L RLL
Sbjct: 221 ELAQFRESYAQDNNVPRNRVFKDDALIELASTKPRTHADLGGSRLL 266
>TIGR_CMR|APH_1098 [details] [associations]
symbol:APH_1098 "3''-5'' exonuclease family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_505646.1 ProteinModelPortal:Q2GJ05 STRING:Q2GJ05
GeneID:3930416 KEGG:aph:APH_1098 PATRIC:20950954
BioCyc:APHA212042:GHPM-1104-MONOMER Uniprot:Q2GJ05
Length = 204
Score = 145 (56.1 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 39/119 (32%), Positives = 60/119 (50%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN--SLEYLL 78
P LR+V DP K+ H A D+ ++ FG++ + T ASR+++ N L+ L
Sbjct: 60 PNLRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLC 119
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 137
+ GV NK Q++DW L E L YA D ++Y++ I K KL M + E +
Sbjct: 120 YELLGVKINKAQQSSDWGREVLTAEQLSYAAAD---VIYLHAIKK-KLDMMLEREEKQE 174
>UNIPROTKB|Q9KQL4 [details] [associations]
symbol:rnd "Ribonuclease D" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 59/240 (24%), Positives = 105/240 (43%)
Query: 18 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 76
++ P++ E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 70 EMTPFV-ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
Query: 77 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 136
L+ V +K DW RPL D+ L YA D YLL +Y+ KL ++
Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYE----KLVEQVTQAGWW 184
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 196
D L E V ++ K E +YL I G L ++LA++ L WR A
Sbjct: 185 DAALQE---SELQVAKRT--KVSNPELAYLDIKGAWQ--LKPKELAILKPLATWRYHEAV 237
Query: 197 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
D + +V+ L+ I++ + ++ H+ I R+ +++++K +++ A+
Sbjct: 238 NRDLALNFVIKETDLLTISRLALRSPKRMEEEGVDPHA-IRRHSSKIIAMVKTALETPAD 296
>TIGR_CMR|VC_1984 [details] [associations]
symbol:VC_1984 "ribonuclease D" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 155 (59.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 59/240 (24%), Positives = 105/240 (43%)
Query: 18 QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEY 76
++ P++ E+ +D + KV+H D+ Q FG M DT + L ++
Sbjct: 70 EMTPFV-ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
Query: 77 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 136
L+ V +K DW RPL D+ L YA D YLL +Y+ KL ++
Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYE----KLVEQVTQAGWW 184
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 196
D L E V ++ K E +YL I G L ++LA++ L WR A
Sbjct: 185 DAALQE---SELQVAKRT--KVSNPELAYLDIKGAWQ--LKPKELAILKPLATWRYHEAV 237
Query: 197 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
D + +V+ L+ I++ + ++ H+ I R+ +++++K +++ A+
Sbjct: 238 NRDLALNFVIKETDLLTISRLALRSPKRMEEEGVDPHA-IRRHSSKIIAMVKTALETPAD 296
>TIGR_CMR|ECH_0300 [details] [associations]
symbol:ECH_0300 "putative ribonuclease D" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
RefSeq:YP_507121.1 ProteinModelPortal:Q2GHG2 STRING:Q2GHG2
GeneID:3928062 KEGG:ech:ECH_0300 PATRIC:20576105
HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
BioCyc:ECHA205920:GJNR-300-MONOMER Uniprot:Q2GHG2
Length = 387
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 59/254 (23%), Positives = 114/254 (44%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E FV+D L + + L +F + + KV H +DI L F +FDT A+
Sbjct: 51 EQFVIDVLAKDMDLS-VLGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAM 109
Query: 66 VLKLERNSLEY--LLHHFCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
N++ Y L+ F G++ +K + ++W +RPL + ++YA D YL +Y I+
Sbjct: 110 FCCCYDNAVGYSKLVEQFLGISLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQIL 169
Query: 123 KIKLSSMPKE----SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
L K E ++ L EV DVC I G+ +
Sbjct: 170 YNNLLDAGKLPWFLEEMNNIVLQEV--NCNDVC---------------DIPDF-GSDMTK 211
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL--PTTAAKLRRLLKSKHSYI 236
+++ VV + EWR+ +A+ + + ++L N+ ++ + + + + L + +K ++
Sbjct: 212 EEIIVVRSVIEWRERLAKFFNLNREFILKNKVMLSLVRDFIKKSDISTLGKYIKKEYLSC 271
Query: 237 ERYMGPVLSIIKNS 250
+ + +L +I N+
Sbjct: 272 DA-VSDLLQVIDNN 284
>TIGR_CMR|NSE_0529 [details] [associations]
symbol:NSE_0529 "3'-5' exonuclease family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0349 KO:K03684
RefSeq:YP_506413.1 ProteinModelPortal:Q2GDN3 STRING:Q2GDN3
GeneID:3931905 KEGG:nse:NSE_0529 PATRIC:22681107
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
BioCyc:NSEN222891:GHFU-549-MONOMER Uniprot:Q2GDN3
Length = 206
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLL 78
P L+ + DP K+ H A DI L+ G+ N + T ASR+++ + +SL+ L
Sbjct: 62 PRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELC 121
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
GV NK Q++DW L E + YA D YL I + + + L
Sbjct: 122 LDLLGVRLNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVML 169
>UNIPROTKB|O07183 [details] [associations]
symbol:MT2755 "CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842580 GO:GO:0000166 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 KO:K03684
EMBL:AL123456 PIR:D70528 RefSeq:NP_217197.1 RefSeq:NP_337256.1
RefSeq:YP_006516125.1 SMR:O07183 EnsemblBacteria:EBMYCT00000002560
EnsemblBacteria:EBMYCT00000070259 GeneID:13319408 GeneID:887708
GeneID:925540 KEGG:mtc:MT2755 KEGG:mtu:Rv2681 KEGG:mtv:RVBD_2681
PATRIC:18127796 TubercuList:Rv2681 HOGENOM:HOG000243390 OMA:ADWSTRP
ProtClustDB:CLSK792001 Uniprot:O07183
Length = 438
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/186 (25%), Positives = 85/186 (45%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + ++H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 107 TNEWILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGH 165
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYD 149
ADW RPLP L YA D L+ + + +S + E +D E + RS++
Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIEL----RAAISRVLAEQGKTDWAAQEFEHLRSFE 221
Query: 150 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 209
R ++ + G+ + + LA V L RD IA+ D + +LP+
Sbjct: 222 -SRP--PPAAARQDRWRRTSGIHKVH-DRRGLAAVRELWTARDRIAQRRDIAPRRILPDS 277
Query: 210 TLIEIA 215
+I+ A
Sbjct: 278 AIIDAA 283
>UNIPROTKB|P09155 [details] [associations]
symbol:rnd "RNase D" species:83333 "Escherichia coli K-12"
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0033890 "ribonuclease D activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA;IMP] [GO:0004540
"ribonuclease activity" evidence=IMP] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
GO:GO:0008033 SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0008408
SUPFAM:SSF47819 eggNOG:COG0349 EMBL:X70994 EMBL:X07055 PIR:S01223
RefSeq:NP_416318.1 RefSeq:YP_490065.1 PDB:1YT3 PDBsum:1YT3
ProteinModelPortal:P09155 SMR:P09155 DIP:DIP-10726N IntAct:P09155
MINT:MINT-1309170 PRIDE:P09155 DNASU:946328
EnsemblBacteria:EBESCT00000002543 EnsemblBacteria:EBESCT00000015703
GeneID:12931344 GeneID:946328 KEGG:ecj:Y75_p1779 KEGG:eco:b1804
PATRIC:32118925 EchoBASE:EB0851 EcoGene:EG10858
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG ProtClustDB:PRK10829
BioCyc:EcoCyc:EG10858-MONOMER BioCyc:ECOL316407:JW1793-MONOMER
BioCyc:MetaCyc:EG10858-MONOMER EvolutionaryTrace:P09155
Genevestigator:P09155 GO:GO:0033890 TIGRFAMs:TIGR01388
Uniprot:P09155
Length = 375
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 52/210 (24%), Positives = 89/210 (42%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 81
L+ + +DP+ K +H D+ FG + DT + + ++ +
Sbjct: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
GV +K DW RPL + YA D YLL I K+ + E+E S
Sbjct: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMV-----ETEASGW--- 175
Query: 142 EVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR AR
Sbjct: 176 --LPAALDECRLMQMRRQEVVAPEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARER 231
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D + +V+ L +A+ +P + +L L
Sbjct: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>TIGR_CMR|SO_2580 [details] [associations]
symbol:SO_2580 "ribonuclease D" species:211586 "Shewanella
oneidensis MR-1" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0042780
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:NP_718166.1 ProteinModelPortal:Q8EE10
GeneID:1170282 KEGG:son:SO_2580 PATRIC:23524787
ProtClustDB:CLSK906783 Uniprot:Q8EE10
Length = 367
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 55/205 (26%), Positives = 87/205 (42%)
Query: 29 DPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYL-LHHFC-GVNA 86
+P K++H D+ +FD+ A+ + + + L Y L C G
Sbjct: 71 NPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMG-HGLGYAKLVETCLGEVI 129
Query: 87 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 146
+K DW RPL D L YA D YL +Y + KL + + L +Y+
Sbjct: 130 DKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDR--------LDWLYEE 181
Query: 147 SYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ E L S E +YL + L QLA + L +WR A A D + G
Sbjct: 182 G----ERMTEGRLASPDAETAYLKVKN--AFQLTEHQLAYLKVLAKWRLEKALARDLALG 235
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRL 228
+V+ + LI +AK+ P + + L +L
Sbjct: 236 FVIKDHGLIALAKKQPKSMSDLLKL 260
>TIGR_CMR|ECH_1011 [details] [associations]
symbol:ECH_1011 "3'-5' exonuclease family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_507797.1 ProteinModelPortal:Q2GFI6 STRING:Q2GFI6
GeneID:3927400 KEGG:ech:ECH_1011 PATRIC:20577396
BioCyc:ECHA205920:GJNR-1014-MONOMER Uniprot:Q2GFI6
Length = 204
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLL 78
P L V D + K+ H A DI ++ G++ + T AS++++ + + L+ L
Sbjct: 60 PNLVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELC 119
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 135
+ V NK Q++DW L E L YA D YL +K KL +M + EN
Sbjct: 120 YELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYL----HALKNKLDAM-LQREN 171
>TIGR_CMR|SPO_0083 [details] [associations]
symbol:SPO_0083 "exonuclease, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISS] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 KO:K03684 HOGENOM:HOG000003834
OMA:CTKIASR ProtClustDB:CLSK863722 RefSeq:YP_165357.1
ProteinModelPortal:Q5LWM8 GeneID:3193828 KEGG:sil:SPO0083
PATRIC:23373403 Uniprot:Q5LWM8
Length = 204
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL--ERNSLEYLL 78
P L + ++P K+ H DI L FG ++ T ASR+++ +R+ L+ L
Sbjct: 61 PNLCAMLENPEVLKLFHFGRFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLC 120
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 115
GV+ +K+ Q +DW L + L YA D YL
Sbjct: 121 QELLGVDISKQQQMSDWGAETLSEAQLDYAASDVLYL 157
>TIGR_CMR|CPS_3518 [details] [associations]
symbol:CPS_3518 "ribonuclease D" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
GO:GO:0042780 HOGENOM:HOG000277560 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_270192.1 ProteinModelPortal:Q47YC8
STRING:Q47YC8 GeneID:3519149 KEGG:cps:CPS_3518 PATRIC:21469973
OMA:SRTGTEI BioCyc:CPSY167879:GI48-3546-MONOMER Uniprot:Q47YC8
Length = 379
Score = 117 (46.2 bits), Expect = 0.00092, P = 0.00092
Identities = 56/240 (23%), Positives = 103/240 (42%)
Query: 34 KVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEY 90
KV+H D+ V+L N+ D+ Q SL Y ++ HF + +K
Sbjct: 77 KVLHACSEDLEVFLTAG-NCKPVNLIDS-QIMMSFLGHGLSLGYAAMVKHFTDIELDKSE 134
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
DW RPL ++ L YA D +L IY KL + + ++ ++ +S +
Sbjct: 135 SRTDWTKRPLTEKQLDYASADVDHLFDIYP----KL--LAEITQAGFLAYAQIETQSM-I 187
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
++ ++ YL+I LN +QL ++ L WR A+ D G+V + T
Sbjct: 188 DKKF--TPIIESEMYLNIK--MNWRLNPKQLNLLKYLASWRFQQAKKRDLPLGFVAKDHT 243
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
L+ +A+ P + + L + + R+ G + + + + A EV + K +R++
Sbjct: 244 LMALAQSNPESVNAMLTL-EGVETLDIRHKGKAMLAVLSQAEQA---EVSSYPDKIDRLD 299
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 649 633 0.00092 120 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 619 (66 KB)
Total size of DFA: 313 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.30u 0.11s 68.41t Elapsed: 00:00:03
Total cpu time: 68.31u 0.11s 68.42t Elapsed: 00:00:03
Start: Mon May 20 15:07:58 2013 End: Mon May 20 15:08:01 2013