BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006352
(649 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera]
Length = 931
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/671 (54%), Positives = 458/671 (68%), Gaps = 50/671 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+CNMFDT
Sbjct: 289 ISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDT 348
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYLL+IYD
Sbjct: 349 GQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYD 408
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA NAQQ
Sbjct: 409 LMRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQ 467
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER +
Sbjct: 468 LAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNL 527
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVG 293
GPV+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++ +
Sbjct: 528 GPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADAR 587
Query: 294 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASENKE 352
ES D + + G + K+ + GS++ G G + PGE+ ++++
Sbjct: 588 AESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEK 647
Query: 353 ATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRK 403
+ I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN KRK
Sbjct: 648 DSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRK 707
Query: 404 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 463
+ + K KE +KLEQIKSSVNLPFHS S N+ +L
Sbjct: 708 LNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL----------- 742
Query: 464 TKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---G 518
+K EE +V SEEP PA+R D E+II E++ +E GN A+
Sbjct: 743 SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGK 802
Query: 519 EDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDF 578
ED GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPFD+
Sbjct: 803 EDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDY 862
Query: 579 EAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAF 638
EAARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGRRR AF
Sbjct: 863 EAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAF 920
Query: 639 PATGNRSATFR 649
PATGNRS TFR
Sbjct: 921 PATGNRSVTFR 931
>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
Length = 901
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/671 (54%), Positives = 458/671 (68%), Gaps = 50/671 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+CNMFDT
Sbjct: 259 ISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDT 318
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYLL+IYD
Sbjct: 319 GQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYD 378
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ +L SM E ENS+ L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA NAQQ
Sbjct: 379 LMRTQLLSM-AELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQ 437
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER +
Sbjct: 438 LAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNL 497
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVG 293
GPV+SII++S+ NAA FE AQ LKE + ASE+ E L ++ ++++ +
Sbjct: 498 GPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADAR 557
Query: 294 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASENKE 352
ES D + + G + K+ + GS++ G G + PGE+ ++++
Sbjct: 558 AESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEK 617
Query: 353 ATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRK 403
+ I T +SSGQSRD + S S +VTE VQ LKKPNR FG+LLGN KRK
Sbjct: 618 DSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRK 677
Query: 404 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 463
+ + K KE +KLEQIKSSVNLPFHS S N+ +L
Sbjct: 678 LNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL----------- 712
Query: 464 TKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---G 518
+K EE +V SEEP PA+R D E+II E++ +E GN A+
Sbjct: 713 SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGK 772
Query: 519 EDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDF 578
ED GS LEM + +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPFD+
Sbjct: 773 EDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDY 832
Query: 579 EAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAF 638
EAARKQ+ FGED E+S G +G + V+S KK+ + Q +D T + +QGRRR AF
Sbjct: 833 EAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAF 890
Query: 639 PATGNRSATFR 649
PATGNRS TFR
Sbjct: 891 PATGNRSVTFR 901
>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
Length = 858
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 357/660 (54%), Positives = 428/660 (64%), Gaps = 88/660 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ VGPYLREVFKDP K+KVMHGADRD+VWLQRDFGIY+CN+FDT
Sbjct: 276 ISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDT 335
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LLHHFCGV ANKEYQNADWR+RPLPDEM+RYAREDTHYLL+IYD
Sbjct: 336 GQASRVLKLERNSLEHLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYD 395
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ L S P ++EN+D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL AG NAQQ
Sbjct: 396 LMRALLLSKPIDNENADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFNAQQ 455
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLR+LLKSKHSYIER++
Sbjct: 456 LAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIERHL 515
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 300
V+SII++SMQ +A FE Q LKE ME+AS+E E D S IP G GV
Sbjct: 516 SSVVSIIRHSMQTSAAFEAAVQHLKERHMEIASQE-ETEANDGSEARSIPG-GNGMNSGV 573
Query: 301 DALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLS 360
A T+ QL++ K GSS+ EL R G GS A H
Sbjct: 574 AACHETS-------AQLEKGLLKQGSSIVELGRGGQGS-------------SAKH----- 608
Query: 361 SSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMKLEQ 418
A VQ LKKP FGALLG KRK D +KK KE +KLE+
Sbjct: 609 -------------------HATVQVLKKPTGAFGALLGGAVAKRKLDTDKKVKEKIKLEK 649
Query: 419 IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS 478
I+SSVNLPFHS G E K ++EE V+ +S
Sbjct: 650 IRSSVNLPFHSF---------------------------MGINEPPKVVVEEPIGVSEIS 682
Query: 479 QSEEP--APAARPDTEDIITLEDDIDEE------EQNLGNLETASAPGEDGSAGSALEMG 530
EE PA +DII L++D D E E + + +T +A G+D S+GSALE
Sbjct: 683 HPEESLDVPATGSSLQDIILLDNDSDMEQNTHIAEPDRDDSKTTNANGDDKSSGSALETD 742
Query: 531 KQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGED 590
+ E +SL+DLS SFQ+CF S N N+K + +S EPSG L+LKPFD+ A + GED
Sbjct: 743 GE-EPVSLADLSMSFQKCFPSGNQNKKTAEVMKSGEPSGGLKLKPFDYTTALRS---GED 798
Query: 591 -AKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 649
A G N+R ++S K S + QKDD T E QGRRR AFPATGNRSATFR
Sbjct: 799 PAGRLKVGSAKNQRGVLDSVGTIKSSPGAKMQKDDETGEYRQGRRRQAFPATGNRSATFR 858
>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 857
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/669 (51%), Positives = 426/669 (63%), Gaps = 103/669 (15%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTLKLR+ VGPYLREVFKDPTK+KVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 272 ISTRTEDFIIDTLKLRIHVGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGIYVCNLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LL HFCG+ ANKEYQNADWR+RPL DEMLRY REDTHYLLYIYD
Sbjct: 332 GQASRVLKLERNSLEHLLRHFCGITANKEYQNADWRLRPLTDEMLRYGREDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+I L SMP E+ENS++PL EVYKRSYDVC QLYEKELL+E+SYLHIYGLQ AG NAQQ
Sbjct: 392 LMRIMLLSMPNETENSNSPLAEVYKRSYDVCMQLYEKELLTESSYLHIYGLQTAGFNAQQ 451
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGLCEWRDVIAR +DESTG++LPN+TL+EIAKQ+P T KLRR LKSKH YIER +
Sbjct: 452 LAIVAGLCEWRDVIARTEDESTGFILPNKTLLEIAKQMPVTPQKLRRALKSKHPYIERNL 511
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERME-----------VASEETEVLV---LDTSSN 286
G V+++++++MQNAA FE AQ+LKE +E + + + V V +D +N
Sbjct: 512 GSVVNVVRHAMQNAAEFEAAAQRLKEGCIETDNLSSIFAFFMKASQDNVEVNDDMDMDTN 571
Query: 287 LKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI 346
L+ G E++ A+ G+ QLK+EP K ++
Sbjct: 572 LETAEAGTETICDGSAVEGSENALQTDSPQLKKEPLKAALAI------------------ 613
Query: 347 ASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP---KRK 403
+A VQ LKKP FGALLG KR+
Sbjct: 614 ---------------------------------DATVQVLKKPAGAFGALLGKSSAGKRR 640
Query: 404 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 463
FD KKDK+ +KL++I+SSV+LPFHS R E
Sbjct: 641 FDMAKKDKDEIKLDKIRSSVSLPFHSFLGRK---------------------------EP 673
Query: 464 TKPIIEESNRVTVVSQSEE--PAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDG 521
KP EE N VT + EE PA EDII L D+ D Q + +T
Sbjct: 674 AKPAAEEPNLVTETPRPEESFAVPATGSSLEDIILLGDNSDVVVQENVDSDTKDV---SK 730
Query: 522 SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP-ERSEEPSGFLQLKPFDFEA 580
S G E ++ E SLSDLSTSFQ+CF S N N+ ++S++P+G LQLKPFD+ A
Sbjct: 731 SVGCESETDEEGEPASLSDLSTSFQKCFQSNNENKTNENNMQKSQDPTGLLQLKPFDYAA 790
Query: 581 ARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPA 640
ARK++ FGE++K S G D ++ V D++K S +KDDGT++ QG+RR AFPA
Sbjct: 791 ARKEVIFGEESKAASGGKDQSRNDGVK--DRRKNSVGGGVEKDDGTRDFPQGKRRQAFPA 848
Query: 641 TGNRSATFR 649
TGNRSATFR
Sbjct: 849 TGNRSATFR 857
>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 936
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 359/680 (52%), Positives = 441/680 (64%), Gaps = 67/680 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED+VVDTLKLR+ VGPYLREVFKDP+KKKV+HGADRD+VWLQRDFGIY+CN+FDT
Sbjct: 293 ISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGIYICNLFDT 352
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLEYLLHHFCGV ANKEYQNADWR+RPLP+EM+RYAREDTHYLLYIYD
Sbjct: 353 GQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYAREDTHYLLYIYD 412
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M++KL+SMP+ESE SD PL EVYKRS+DVC LYEKELL+E+SYL++YGLQG+G +AQQ
Sbjct: 413 LMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQGSGFDAQQ 472
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T KLRRLLKSKH YIER +
Sbjct: 473 LAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKHPYIERNL 532
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVG 293
+++II++SM N+ FE AQ+LKE R E ASEE E + DT N+K V
Sbjct: 533 ASIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTILNMKNSAVD 592
Query: 294 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN--- 350
D V + P S VA L+R G F PG+ + ++
Sbjct: 593 NTPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGKCVKVDHSLH 631
Query: 351 ---KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRK 403
+ HIS + ++S S+ N K P VT + KK NRG G+LLGN PKRK
Sbjct: 632 PVLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSLLGNSAPKRK 691
Query: 404 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKPDLPFPSSFG 459
D +KKDKE KL++I+SSV LPFHS EQLK P V + +LP S
Sbjct: 692 LDIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNSELPAAESAK 751
Query: 460 SGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNL-------- 511
S P + P P P T++II LEDD D+ ++
Sbjct: 752 SSNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDEDEDEELRAV 796
Query: 512 -ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSG 569
E P G SA S LE+ DE MSLS+LS+SFQ+C +S G+ + S
Sbjct: 797 DEATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGETDNPGNQSD 856
Query: 570 FLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKEL 629
FLQ+KPFD+EAARK++ FGED +E + K + K +D+ QK+ GT EL
Sbjct: 857 FLQIKPFDYEAARKEVVFGEDLEEDLEPENDKDPKASKNAGAKLDLGLDRVQKNSGTVEL 916
Query: 630 SQGRRRSAFPATGNRSATFR 649
QG+RR AFPATGNRSATFR
Sbjct: 917 PQGKRRHAFPATGNRSATFR 936
>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 889
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 345/655 (52%), Positives = 438/655 (66%), Gaps = 70/655 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ +GPYLRE+FKDP K+KVMHGADRDI WLQRDFGIY+CN+FDT
Sbjct: 299 ISTRTEDFIVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIAWLQRDFGIYICNLFDT 358
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QAS++L LERNSLE++LHHFC V ANKEYQNADWR+RPLPDEM+RYAREDTHYLLYIYD
Sbjct: 359 HQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYD 418
Query: 121 IMKIKLSSM---PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
+M+IKL ++ + SE+SDTPL EVYKRSYDVC QLYEKELL+ENSYLHIYGLQGAG N
Sbjct: 419 LMRIKLFALSKESESSESSDTPLVEVYKRSYDVCIQLYEKELLTENSYLHIYGLQGAGFN 478
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 237
AQQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRRL+KSKH Y+E
Sbjct: 479 AQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPYVE 538
Query: 238 RYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESV 297
+ V+SII++S+QNAA+FE AQ+LKE + AS+ V T P+ R S
Sbjct: 539 HNLDTVVSIIRHSIQNAASFEEAAQQLKEAQAVTASDVVPV----TDGTEDPPSHTRHSK 594
Query: 298 DGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIS 357
+ T++P L EPPK ++AE
Sbjct: 595 ESSQHQ-ATSVPIKIKSNSLIFEPPKDSLTIAE--------------------------- 626
Query: 358 TLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMK 415
Q+RD N + + AAVQ LKKP FGALLG+ KRK G K KE +K
Sbjct: 627 ------QNRDANVGALSTAKGNGAAVQVLKKPTGAFGALLGSSASKRKL-GPGKGKEEIK 679
Query: 416 LEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVT 475
LEQI+SSV+LPFHS E KSEP + ++P +S S E KP+ +
Sbjct: 680 LEQIRSSVSLPFHSFLGSSE--------KSEPTE-EIPSVASEMS-EPQKPVSD------ 723
Query: 476 VVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDET 535
VVS S ++II LE D ++ NLE ++ E S S +DE
Sbjct: 724 VVSASP---------VDEIIMLESDTGAKDMEQNNLENSNEHREKDSVVSTSGKEDEDEP 774
Query: 536 MSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKS 595
+SLS+LS++ ++CFHS + N K +P+++E+PSG +QLKPFD+EAARK ++FGE K S
Sbjct: 775 VSLSELSSNLKKCFHSNDQNNKIRQPKKTEQPSGLVQLKPFDYEAARKHVKFGEHKKHAS 834
Query: 596 A-GVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 649
+ G DG+ +SG KK+ S Q Q D +K+L QGRRR AFPA+GNRS+TFR
Sbjct: 835 SKGSDGHMEVVEDSGSKKQRSTTGQGQASDLSKQLPQGRRRQAFPASGNRSSTFR 889
>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 935
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 356/680 (52%), Positives = 441/680 (64%), Gaps = 68/680 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED+VVDTLKLR+ VGPYLREVFKDP+KKKV+HGADRD+VWLQRDFGIY+CN+FDT
Sbjct: 293 ISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGIYICNLFDT 352
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLEYLLHHFCGV ANKEYQNADWR+RPLP+EM+RYAREDTHYLLYIYD
Sbjct: 353 GQASRVLKLERNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMVRYAREDTHYLLYIYD 412
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M++KL+SMP+ESE SD PL EVYKRS+DVC LYEKELL+E+SYL++YGLQG+G +AQQ
Sbjct: 413 LMRMKLASMPRESEESDLPLVEVYKRSHDVCMHLYEKELLTESSYLYVYGLQGSGFDAQQ 472
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAV AGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T KLRRLLKSKH YIER +
Sbjct: 473 LAVAAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTVNKLRRLLKSKHPYIERNL 532
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVG 293
+++II++SM N+ FE AQ+LKE R E ASEE E + DT N+K V
Sbjct: 533 ASIVTIIRHSMLNSCAFEEAAQRLKEVRAEAASEENASANEHQETNIPDTILNMKNSAVD 592
Query: 294 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASEN--- 350
D V + P S VA L+R G F PG+ + ++
Sbjct: 593 NTPSDRVCS-------------------PSSQSKVAPLER-GYRPFV-PGKCVKVDHSLH 631
Query: 351 ---KEATHISTL--SSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRK 403
+ HIS + ++S S+ N K P VT + KK NRG G+LLGN PKRK
Sbjct: 632 PVLNGSRHISPVGPTTSEPSKHSNGDKYPVAHVTGVNISLQKKTNRGLGSLLGNSAPKRK 691
Query: 404 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLK----PVDVMKSEPNKPDLPFPSSFG 459
D +KKDKE KL++I+SSV LPFHS EQLK P V + +LP S
Sbjct: 692 LDIDKKDKEESKLDKIRSSVTLPFHSFLGTSEQLKSVAEPTTVTALKTQNSELPAAESAK 751
Query: 460 SGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNL-------- 511
S P + P P P T++II LEDD D+ ++
Sbjct: 752 SSNVEPPAV--------------PVPKPFP-TDEIIMLEDDSDDNVEDEDEDEDEELRAV 796
Query: 512 -ETASAPGEDG-SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSG 569
E P G SA S LE+ DE MSLS+LS+SFQ+C +S G+ + S
Sbjct: 797 DEATGEPKLKGLSASSPLEIDDDDEPMSLSELSSSFQKCLNSNEKAMNVGETDNPGNQSD 856
Query: 570 FLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKEL 629
FLQ+KPFD+EAARK + + ++ D + + N+G K + +D+ QK+ GT EL
Sbjct: 857 FLQIKPFDYEAARKVVFGEDLEEDLEPENDKDPKASKNAGAKLDL-GLDRVQKNSGTVEL 915
Query: 630 SQGRRRSAFPATGNRSATFR 649
QG+RR AFPATGNRSATFR
Sbjct: 916 PQGKRRHAFPATGNRSATFR 935
>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
Length = 855
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 348/660 (52%), Positives = 421/660 (63%), Gaps = 90/660 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ VGPYLREVFKDP K+KVMHGADRDIVWLQRDFGIY+CN+FDT
Sbjct: 275 ISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLEYLLHHFCGV A KEYQNA+WR+RPLPDEM+RYAREDTHYLL+IYD
Sbjct: 335 GQASRVLKLERNSLEYLLHHFCGVTAKKEYQNAEWRLRPLPDEMIRYAREDTHYLLHIYD 394
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ L + +++N D PL EVYKRSYDVC QLYEKEL +ENSYL++YGL AG NAQQ
Sbjct: 395 LMRALLLTKHSDNDNGDPPLVEVYKRSYDVCMQLYEKELFTENSYLNMYGLPNAGFNAQQ 454
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGL EWRD IARA+DESTGY+LPN+TL+EIAK++P T +KLRRLLKSKHSYIER++
Sbjct: 455 LAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTPSKLRRLLKSKHSYIERHL 514
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 300
V+SII++SMQ +A FE Q LKE ME AS++ DT N +SV G
Sbjct: 515 SSVVSIIRHSMQTSAAFEAAVQHLKERLMETASQK------DTEVN---DGCEEKSVHGG 565
Query: 301 DALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLS 360
+ + G+ QLK+ K GSS+ EL + G S A H
Sbjct: 566 NGMNGSVAAE--TSMQLKRGLLKQGSSIVELGKGGHES-------------SAKH----- 605
Query: 361 SSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALL--GNPKRKFDGEKKDKEAMKLEQ 418
A VQ LKKP FGALL KRK +KK E +KLE+
Sbjct: 606 -------------------HATVQILKKPTGAFGALLRGAAAKRKLGTDKKVGEEVKLEK 646
Query: 419 IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS 478
I+SSVNLPFHS R+E KPV +PI+ E +S
Sbjct: 647 IRSSVNLPFHSFMPRNEPPKPV----------------------VEEPIVSE------IS 678
Query: 479 QSEE--PAPAARPDTEDIITLEDDID-EEEQNLGNLET-----ASAPGEDGSAGSALEMG 530
EE PA +DII L+DD D E++ +G E + +D S+G+ALE
Sbjct: 679 HPEESLAVPATGSSLQDIIMLDDDSDMEQDTRIGEPERDDSKPTNVNRDDISSGTALETD 738
Query: 531 KQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGED 590
K +E +SLSDLSTS Q+ F S+N NR+ + ++S E S L+LKPFD+ AA + FGE
Sbjct: 739 KVEEPVSLSDLSTSSQKRFQSSNQNRRTAEGKKSGESSSVLKLKPFDYTAA---LRFGEG 795
Query: 591 AKEK-SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 649
EK G D N+R S K K S QKDD T E +GRRR AFPA+GNRSATFR
Sbjct: 796 PTEKLKVGNDKNQRDVRVSVGKIKSSPGAPVQKDDETGEFREGRRRQAFPASGNRSATFR 855
>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 877
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 325/656 (49%), Positives = 421/656 (64%), Gaps = 80/656 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFVVDTLKLR+ +GPYLRE+FKDP K+KVMHGADRDIVWLQRDFGIY+CN+FDT
Sbjct: 295 ISTRTEDFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDT 354
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QAS++L LERNSLE++LHHFC V ANKEYQNADWR+RPLP+EMLRYAREDTHYLLYIYD
Sbjct: 355 HQASKLLNLERNSLEHILHHFCEVTANKEYQNADWRLRPLPNEMLRYAREDTHYLLYIYD 414
Query: 121 IMKIKLSSM---PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
+M+I+L ++ + SE+SDTP EVYKRSYDVC QLYEKE L+ENSYLHIYGLQGAG N
Sbjct: 415 LMRIRLFALSKESESSESSDTPPVEVYKRSYDVCMQLYEKEFLTENSYLHIYGLQGAGFN 474
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 237
AQQLA+V+GLCEWRD++ARA+DESTGYVLPN++++EIAKQ+P T +KLRRL+KSKH Y+E
Sbjct: 475 AQQLAIVSGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQMPLTTSKLRRLVKSKHPYVE 534
Query: 238 RYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESV 297
+ V+SII++S+QN+A FE AQ+LKE + AS+ V+ + + P +
Sbjct: 535 HNLDTVVSIIRHSIQNSAAFEEAAQQLKEAQAGTASD-----VVPFTDGTEDPQSHTQDS 589
Query: 298 DGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIS 357
T +P L+ EPPK ++A+
Sbjct: 590 KESSNHQDTNVPINLKSNSLRSEPPKDSLTIAD--------------------------- 622
Query: 358 TLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRKFDGEKKDKEAMK 415
Q+RD N + + A VQ LKKP FGALLGN KRK G K KE K
Sbjct: 623 ------QNRDANVGALSTTKGNGATVQVLKKPTGAFGALLGNSASKRKL-GPDKGKEDSK 675
Query: 416 LEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVT 475
LEQI+SSV+LPFHS GS E+++P +E +
Sbjct: 676 LEQIRSSVSLPFHSF---------------------------LGSSEKSEPTVETHTVAS 708
Query: 476 VVSQSEEPAP--AARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQD 533
+ +S+ P + ++II LE E NLE++S E S S +D
Sbjct: 709 EMLESQRPVSDVVSVSPLDEIIMLESGTGAENMEQNNLESSSEHREKDSVVSISGKEDED 768
Query: 534 ETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKE 593
E++SL +LS++F++CFHS + N K P+++E+PSG + +KPFD+EAARK ++FGE K
Sbjct: 769 ESVSLLELSSNFKKCFHSNDQNYKTRWPKKTEQPSGLVPMKPFDYEAARKHVKFGEHTKH 828
Query: 594 KSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 649
S+ + + +SG KK+ S + Q Q L QGRRR AFPA+GNRS+TFR
Sbjct: 829 ASSKGSDSHMEVEDSGSKKQRSTIGQGQ-------LPQGRRRQAFPASGNRSSTFR 877
>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
Length = 867
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/661 (46%), Positives = 401/661 (60%), Gaps = 105/661 (15%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VDT KLR+ +GPYLRE+FKDP KKK+MHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 299 ISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKIMHGADRDIIWLQRDFGIYVCNLFDT 358
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL L RNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYIYD
Sbjct: 359 GQASRVLNLGRNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYD 418
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L M K+ E++D+PL +VYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA Q
Sbjct: 419 VMRLELERMAKDDEHTDSPLLQVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQ 478
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER +
Sbjct: 479 LAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPVSVGKLRRMLKSKHPYIERNV 538
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 300
V+S+I+ SMQN+A FE A LK
Sbjct: 539 DSVVSVIRQSMQNSAAFESAALSLK----------------------------------- 563
Query: 301 DALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLS 360
D GT M + K++ V + L N + E+ N +A + + S
Sbjct: 564 DVSPGTVMDKNIEHISEKKDMHAVDVASPSLKEN-----SSQLESTRDLNMDAANTNEGS 618
Query: 361 SSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEKKDKEAMKLEQ 418
G +A S + R++ KKP+ G GALLG+ K+K ++K KE +KLEQ
Sbjct: 619 GLGTGLFGSAKVSAAVRIS-------KKPSSGLGALLGSAASKKKSRTDEKVKEDVKLEQ 671
Query: 419 IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS 478
I+SSVNL FHS + P S + E T + + +
Sbjct: 672 IRSSVNLSFHSFTEK--------------------VPDSKSTTETTPKVYGKPEEMFTTM 711
Query: 479 QSEEPAPAARPDTEDIIT-LEDDIDEEEQNLGNLETASAPGEDGSA---------GSALE 528
Q A ED +T L+DD +E + +G S GS G E
Sbjct: 712 Q-------ASVSKEDGVTELKDDSEEASEIVGTSGRVSESKVFGSKTGDIILLENGDEKE 764
Query: 529 MGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFG 588
+ +DE MSLS+LST+FQ+CF S K ++++ + FL ++PFD+EAARK+++FG
Sbjct: 765 VEAEDEPMSLSELSTNFQKCFKSMK------KSNKAQKQTEFLNIEPFDYEAARKEVKFG 818
Query: 589 EDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATF 648
E K + +K V +G KKK S +Q+ E QG+RR AFPA+GNRSATF
Sbjct: 819 EGHKGRQG------KKEVAAGQKKKGSGPEQS-------EFGQGKRRQAFPASGNRSATF 865
Query: 649 R 649
+
Sbjct: 866 K 866
>gi|334188034|ref|NP_198440.2| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
Length = 870
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 305/666 (45%), Positives = 400/666 (60%), Gaps = 116/666 (17%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 303 ISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDT 362
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYIYD
Sbjct: 363 GQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYD 422
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA Q
Sbjct: 423 LIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER +
Sbjct: 483 LAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERNV 542
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLK--------EERMEVASEETEVLVLDTSSNLKIPNV 292
V+S+I+ SMQ+ A FE A LK ++ +E SE+ ++ D +S P++
Sbjct: 543 DSVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGDVAS----PSL 598
Query: 293 GRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKE 352
S +QL+ + + + GLGS
Sbjct: 599 KENS------------------SQLESTRDLIMGAANTNEGRGLGS-------------- 626
Query: 353 ATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEKKD 410
S+ S + K PS G GALLGN K+K ++K
Sbjct: 627 ----GLFGSAKVSAAVRISKKPSS---------------GLGALLGNAASKKKSRTDEKV 667
Query: 411 KEAMKLEQIKSSVNLPFHSIFAR------DEQLKPVDVMKSEPNKPDLPFPSSFGSG-EQ 463
KE +KLEQI+SSVNL FHS + + P K E +P S G ++
Sbjct: 668 KEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPASVSKEDGVKE 727
Query: 464 TKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSA 523
K EE++ + S + + + DII LE+
Sbjct: 728 LKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLEN------------------------ 763
Query: 524 GSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARK 583
G ++ +DE MSLS+LST+FQ+CF S N ++K +++ + FL ++PFD+EAARK
Sbjct: 764 GDEKKVDAEDEPMSLSELSTNFQKCFKSMNKSKK------AQKQTEFLNIEPFDYEAARK 817
Query: 584 QIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGN 643
+++FGE G G + K + +KK S +Q+ E QG+RR AFPA+GN
Sbjct: 818 EVKFGE-------GHKGRQGKREAAAGQKKGSTQEQS-------EFGQGKRRQAFPASGN 863
Query: 644 RSATFR 649
RS +F+
Sbjct: 864 RSMSFK 869
>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
Length = 834
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 305/667 (45%), Positives = 400/667 (59%), Gaps = 117/667 (17%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 266 ISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYIYD
Sbjct: 326 GQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA Q
Sbjct: 386 LIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQ 445
Query: 181 LAVVA-GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
LA+VA GLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER
Sbjct: 446 LAIVAVGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERN 505
Query: 240 MGPVLSIIKNSMQNAANFEVIAQKLK--------EERMEVASEETEVLVLDTSSNLKIPN 291
+ V+S+I+ SMQ+ A FE A LK ++ +E SE+ ++ D +S P+
Sbjct: 506 VDSVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGDVAS----PS 561
Query: 292 VGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENK 351
+ S +QL+ + + + GLGS
Sbjct: 562 LKENS------------------SQLESTRDLIMGAANTNEGRGLGS------------- 590
Query: 352 EATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNP--KRKFDGEKK 409
S+ S + K PS G GALLGN K+K ++K
Sbjct: 591 -----GLFGSAKVSAAVRISKKPSS---------------GLGALLGNAASKKKSRTDEK 630
Query: 410 DKEAMKLEQIKSSVNLPFHSIFAR------DEQLKPVDVMKSEPNKPDLPFPSSFGSG-E 462
KE +KLEQI+SSVNL FHS + + P K E +P S G +
Sbjct: 631 VKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPASVSKEDGVK 690
Query: 463 QTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGS 522
+ K EE++ + S + + + DII LE+
Sbjct: 691 ELKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLEN----------------------- 727
Query: 523 AGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAAR 582
G ++ +DE MSLS+LST+FQ+CF S N ++K +++ + FL ++PFD+EAAR
Sbjct: 728 -GDEKKVDAEDEPMSLSELSTNFQKCFKSMNKSKK------AQKQTEFLNIEPFDYEAAR 780
Query: 583 KQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATG 642
K+++FGE G G + K + +KK S +Q+ E QG+RR AFPA+G
Sbjct: 781 KEVKFGE-------GHKGRQGKREAAAGQKKGSTQEQS-------EFGQGKRRQAFPASG 826
Query: 643 NRSATFR 649
NRS +F+
Sbjct: 827 NRSMSFK 833
>gi|357146328|ref|XP_003573952.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 906
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/660 (41%), Positives = 391/660 (59%), Gaps = 74/660 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G LREVF+DPTKKKVMHGA RDI+WLQRDFGIY+CN+FDT
Sbjct: 308 ISTRTEDFIVDTLKLRKYLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYVCNLFDT 367
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM +YAREDTHYLLYIYD
Sbjct: 368 GQASRILQMDRNSLEHLLHHFCGVVANKEYQSADWRLRPLPDEMTKYAREDTHYLLYIYD 427
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L + ES + + L EV KRS ++C QLYEKELL+++SYL+I+GL+ L+A+Q
Sbjct: 428 LMRLRLVN---ESSDENDLLLEVCKRSNEICLQLYEKELLTDSSYLYIHGLKENELSARQ 484
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAV++GL +WRD +ARA+DESTGY+LPN+ L+EIAKQ+P T+ +L+R +KSK+ ++ER++
Sbjct: 485 LAVLSGLYQWRDSVARAEDESTGYILPNKALLEIAKQMPLTSGRLKRTVKSKNPFLERHL 544
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLK----IPNVGRES 296
G V++II+N+++N+ FE IA++LK+ R+E E+LV D ++ + IP V ++
Sbjct: 545 GHVITIIRNAIENSVAFESIAEQLKKGRLE------ELLVADAKNSTEDTEMIPAVNADN 598
Query: 297 VDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHI 356
++ L + P T + +S A L LG+ I E K +
Sbjct: 599 IESNFVLSDGSALVPTVITNVVTASSGNVTSGASLGNLQLGN-------ITPETKSLVTL 651
Query: 357 STLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-----FDGEKKDK 411
S + + L S +V +A VQ K+P FGALLG F G ++
Sbjct: 652 SGPTGLADTEVLT--NSSQQQVAKAKVQVSKRPT-AFGALLGKSSSGRRPNLFPGFSSEQ 708
Query: 412 EAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEES 471
K+++IKSSV LPFH F S + P+ E
Sbjct: 709 SKSKVDKIKSSVVLPFHH------------------------FSGGVKSPATSLPVAE-- 742
Query: 472 NRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGK 531
S+ E E++I L+ E + G++ EM
Sbjct: 743 ---LAYSEPESICNDPASQMEEVIQLDTGTHNHLP-----ENCNVDGQNHCEPEDTEM-- 792
Query: 532 QDETMSLSDLSTSFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFEAARKQIEFGED 590
+ S +LS+ ++ F S N +R + ++ EEP QLKPFD+ ARK I FGE
Sbjct: 793 ---SSSPRELSSGNEQRFRSINESRNVQQNHKALEEPEFHDQLKPFDYAEARKNISFGEV 849
Query: 591 AKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATF 648
E+ D + +N SGDK++ S ++D+G + RRR AFP +GNRSAT+
Sbjct: 850 KSERRK--DNAVARAINKDSGDKRRTSKQPGGEEDEG--DFQNPRRRQAFPPSGNRSATY 905
>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
Length = 877
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 281/671 (41%), Positives = 399/671 (59%), Gaps = 96/671 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 279 ISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDT 338
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 339 GQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYD 398
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+Q
Sbjct: 399 LMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQ 455
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L+V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+SY+ER++
Sbjct: 456 LSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHL 515
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 300
G V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 516 GHVISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGD 558
Query: 301 DALVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS-------- 348
+V PA + P +VA ++ +G+ +H + S
Sbjct: 559 TEMV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQ 609
Query: 349 -ENKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP-----K 401
EN T + S +D+ + + V +A VQ K+P FGALLG P +
Sbjct: 610 LENPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQ 668
Query: 402 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 461
F G + +++IKSSV LPFH+ F + + E +P+ P S
Sbjct: 669 NLFSGFSSGQNM--VDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI--- 719
Query: 462 EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDG 521
+ + P + + + + ++++ P P + + L D ++E + +P E
Sbjct: 720 QYSDPACQTEDVIQLGTETDGPQPPENHNKDGQGHLVPD---------DMEMSRSPPEHS 770
Query: 522 SAGSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFE 579
SAG+ KQ FQ S N N KP +EP QLKPFD+
Sbjct: 771 SAGA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYA 809
Query: 580 AARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSA 637
ARK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ A
Sbjct: 810 EARKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--A 865
Query: 638 FPATGNRSATF 648
FP +GNRSAT+
Sbjct: 866 FPPSGNRSATY 876
>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
Group]
Length = 902
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 281/671 (41%), Positives = 399/671 (59%), Gaps = 96/671 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 304 ISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDT 363
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 364 GQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYD 423
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+Q
Sbjct: 424 LMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQ 480
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L+V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+SY+ER++
Sbjct: 481 LSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHL 540
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 300
G V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 541 GHVISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGD 583
Query: 301 DALVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS-------- 348
+V PA + P +VA ++ +G+ +H + S
Sbjct: 584 TEMV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQ 634
Query: 349 -ENKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP-----K 401
EN T + S +D+ + + V +A VQ K+P FGALLG P +
Sbjct: 635 LENPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQ 693
Query: 402 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 461
F G + +++IKSSV LPFH+ F + + E +P+ P S
Sbjct: 694 NLFSGFSSGQNM--VDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI--- 744
Query: 462 EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDG 521
+ + P + + + + ++++ P P + + L D ++E + +P E
Sbjct: 745 QYSDPACQTEDVIQLGTETDGPQPPENHNKDGQGHLVPD---------DMEMSRSPPEHS 795
Query: 522 SAGSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFE 579
SAG+ KQ FQ S N N KP +EP QLKPFD+
Sbjct: 796 SAGA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYA 834
Query: 580 AARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSA 637
ARK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ A
Sbjct: 835 EARKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--A 890
Query: 638 FPATGNRSATF 648
FP +GNRSAT+
Sbjct: 891 FPPSGNRSATY 901
>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
Length = 854
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 281/671 (41%), Positives = 399/671 (59%), Gaps = 96/671 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G YLRE+FKDPTKKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 256 ISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDT 315
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+++RNSLE+LLHHFCGV ANKEYQ+ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 316 GQASRILQMDRNSLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYD 375
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L KES + + L EVYKRS ++C QLYEKELL+ +SYL+I+GL+ +A+Q
Sbjct: 376 LMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQ 432
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L+V+A + +WRD +AR +DESTGY+LPN+TL+EIAKQ+P T +L+R++KSK+ Y+ER++
Sbjct: 433 LSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNLYLERHL 492
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGV 300
G V+S I++++ N FE IA++LK+ R+E E+ V + SN DG
Sbjct: 493 GHVISTIRSAIANCDAFESIAEQLKKGRLE------ELAVANMKSN-----------DGD 535
Query: 301 DALVGTTMPHPPAYTQLKQE----PPKVGSSVAELDRNGLGSFAHPGEAIAS-------- 348
+V PA + P +VA ++ +G+ +H + S
Sbjct: 536 TEMV-------PADDGNNDDDNVGPSDEHGAVASVE--NVGAASHCTGNVTSGASSVNVQ 586
Query: 349 -ENKEATHISTLSSSGQSRDLNACKSPSPR-VTEAAVQALKKPNRGFGALLGNP-----K 401
EN T + S +D+ + + V +A VQ K+P FGALLG P +
Sbjct: 587 LENPAETKSLGILSGVSGQDMEVLSNGDRKQVAKATVQVSKRPT-AFGALLGKPTSGRRQ 645
Query: 402 RKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSG 461
F G + K+++IKSSV LPFH+ F + + E +P+ P S
Sbjct: 646 NLFSGFSSGQN--KVDKIKSSVALPFHN-FCGGAKSPATSIPLEESVRPE---PESI--- 696
Query: 462 EQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDG 521
+ + P + + + + ++++ P P + + L D ++E + +P E
Sbjct: 697 QYSDPACQTEDVIQLGTETDGPQPPENHNEDGQGHLVPD---------DMEMSRSPPEHS 747
Query: 522 SAGSALEMGKQDETMSLSDLSTSFQECFHSAN--NNRKPGKPERSEEPSGFLQLKPFDFE 579
SAG+ KQ FQ S N N KP +EP QLKPFD+
Sbjct: 748 SAGA-----KQ-----------RFQSLIESRNQQQNHKP-----HQEPEFNHQLKPFDYA 786
Query: 580 AARKQIEFGEDAKEKSAGVDGNKRKPVN--SGDKKKVSAVDQAQKDDGTKELSQGRRRSA 637
ARK I FGE E+ D + +N SGDK + S A +++G ++ +GR+ A
Sbjct: 787 EARKNITFGERKAERIK--DNAVARAINKDSGDKGRTSNQFGAGENEGNRQNPRGRQ--A 842
Query: 638 FPATGNRSATF 648
FP +GNRSAT+
Sbjct: 843 FPPSGNRSATY 853
>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/665 (41%), Positives = 389/665 (58%), Gaps = 85/665 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G LREVF+DPTKKKVMHGA RDI+WLQRDFGIY+CN+FDT
Sbjct: 309 ISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYVCNLFDT 368
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+++RNSLE+LL +FCGV ANKEYQ+ADWR+RPLPDEM +YAREDTHYLLYIYD
Sbjct: 369 GQASRILQMDRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYAREDTHYLLYIYD 428
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L + ES D L EV KRS ++C QLYEKELL+++SYL+I+GL+ L+A+Q
Sbjct: 429 LMRLRLVN---ESSGDDL-LLEVCKRSNEICLQLYEKELLTDSSYLYIHGLKENDLSARQ 484
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAV+AGL +WRD +ARA+DESTGY+LPN+TL+EIAKQ+P T +L+R +KSK+ ++E Y+
Sbjct: 485 LAVLAGLYQWRDGVARAEDESTGYILPNKTLLEIAKQMPVTTGRLKRTVKSKNKFLEHYL 544
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERME---VA-----SEETEVL-VLDTSSNLKIPN 291
G V++ I+N++ NA FE IA++LK+ R+E VA +E+TE++ +D SN
Sbjct: 545 GHVITTIRNAVANADAFESIAEQLKKGRLEELMVAEVKDGAEDTEMISAVDADSN----- 599
Query: 292 VGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENK 351
++ ++ +V T+ +T G+S+ L + + E K
Sbjct: 600 --ESNLQLIEPVVAPTV-ITNIHTSFCTGNVTSGASLGNLQLDN----------VTPETK 646
Query: 352 EATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-----FDG 406
+ ++GQ+ + S +V +A VQ K+P FGALLG P F G
Sbjct: 647 SFGALP--GATGQADTVIPSNSGQQQVIKATVQVSKRPT-AFGALLGKPSSARRSNLFPG 703
Query: 407 EKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKP 466
D+ K+E+IKSSV LPFH + P LP
Sbjct: 704 FSSDQSKSKVEKIKSSVVLPFHHFSG-----------GANPAATSLP------------- 739
Query: 467 IIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSA 526
V++S EP E I +D + E+ + L+T + E+G+A
Sbjct: 740 ----------VAKSVEP--------EAEIMCDDPASQMEEVI-QLDTGTDDPENGNADGQ 780
Query: 527 LEM--GKQDETMSLSDLSTSFQECFHSANNNRK-PGKPERSEEPSGFLQLKPFDFEAARK 583
E G D + S +LS+ ++ F N +R K + EEP QLK FD+ ARK
Sbjct: 781 SECKPGDTDVSSSPPELSSGIEQRFRPLNESRDLQQKHQAPEEPEFNDQLKAFDYAEARK 840
Query: 584 QIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGN 643
FGE E+ + +SGDK++ S ++ RRR AFP +GN
Sbjct: 841 NTSFGEVRSERRKDNAVARAINADSGDKRRSSKQIPGGGEEDEGNFQNPRRRQAFPPSGN 900
Query: 644 RSATF 648
RSAT+
Sbjct: 901 RSATY 905
>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
Length = 578
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 196/266 (73%), Positives = 232/266 (87%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VDT KLR+ +GPYLRE+FKDP KKKVMHGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 303 ISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDT 362
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL LERNSLE+LL HFCGV ANKEYQNADWR+RPLP+EM RYAREDTHYLLYIYD
Sbjct: 363 GQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYD 422
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++K++L M K+ ++D+PL EVYKRSYDVC QLYEKELL+ENSYLH+YGLQ AG NA Q
Sbjct: 423 LIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGLCEWRD IARA+DESTGYVLPN+ L+EIAK++P + KLRR+LKSKH YIER +
Sbjct: 483 LAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERNV 542
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKE 266
V+S+I+ SMQ+ A FE A LK+
Sbjct: 543 DSVVSVIRQSMQHYAAFESAALSLKD 568
>gi|334183304|ref|NP_001185222.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 639
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/274 (70%), Positives = 229/274 (83%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 158 ISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDT 217
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYIYD
Sbjct: 218 GQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYD 277
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA Q
Sbjct: 278 VMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQ 337
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 338 LSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNF 397
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 398 DAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 431
>gi|145336746|ref|NP_175846.3| RRP6-like protein 1 [Arabidopsis thaliana]
gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 637
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/274 (70%), Positives = 229/274 (83%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 158 ISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDT 217
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYIYD
Sbjct: 218 GQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYD 277
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA Q
Sbjct: 278 VMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQ 337
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 338 LSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLERNF 397
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 398 DAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 431
>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
Length = 681
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 194/275 (70%), Positives = 228/275 (82%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VDT KL +GP+LRE+FKDP KKKVMHGAD DI+WLQRDFGIY+CN+FDT
Sbjct: 251 ISTRTEDYIVDTFKLWDHIGPHLRELFKDPKKKKVMHGADHDIIWLQRDFGIYVCNLFDT 310
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLER SLE+LL H+CGV A+K+YQNADWR+RPLPD M RYAREDTHYLLYIYD
Sbjct: 311 GQASRVLKLERKSLEFLLKHYCGVAADKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYD 370
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+I L +M KE E SD+PL E YK SYDVC QLYEKELL+ +SYLH YG++ LNA Q
Sbjct: 371 VMRIDLHTMAKEDEQSDSPLVEAYKGSYDVCMQLYEKELLTGDSYLHTYGVRSGNLNAVQ 430
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L++VAGLCEWRD IARADDESTGYVLPN+TL +IAK +P T A+LRRLLKSKH YIER
Sbjct: 431 LSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKDMPITTAQLRRLLKSKHPYIERNF 490
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 275
V+S+I+ SMQNAA FE + Q LK+ R E E+
Sbjct: 491 DAVISVIRRSMQNAAAFEPVVQSLKDWRPETVVEK 525
>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
Length = 882
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 385/664 (57%), Gaps = 85/664 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF IY+CN+FDT
Sbjct: 287 ISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDT 346
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 347 GQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYD 406
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L + ES + L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA+Q
Sbjct: 407 LMRLRLVN---ESSGENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNARQ 463
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L+V++ L WRD IARA+DESTGY+LPN+TL+EIAK++P T+ KL+R++KS++ ++ER++
Sbjct: 464 LSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRIVKSRNLFLERHL 523
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEV--------ASEETEVLVLDTSSNLKIPNV 292
G V++ I++++ + FE +A++LK+ ++E +SE+ E++ N++ PN
Sbjct: 524 GHVINNIRDAIAASGAFESVAEQLKKGKLEELTVADVKNSSEDIEMIPAVDVGNIEDPND 583
Query: 293 GRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKE 352
V V VG P +G+ +E LG+ E + E K+
Sbjct: 584 ESAVVSAVITNVGAA--------------PCMGTITSEA---SLGNMHL--EDVVPETKD 624
Query: 353 ATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPK--RK---FDGE 407
+ S + + L+ + + +A VQ K+P FGAL G P RK F G
Sbjct: 625 SGTSSGFTGLADTEKLSNDQQ---QAAKATVQVSKRPT-AFGALFGKPAAGRKPDLFLGF 680
Query: 408 KKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPI 467
+ K+++I SSV LPFH ++P+ P LP S S +
Sbjct: 681 PNVQGKTKVDKITSSVVLPFHHFSG-----------GAKPSSPILPAKESLHSEPEN--- 726
Query: 468 IEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSAL 527
I+ + PA R E++I L+ + DE + P E+G+
Sbjct: 727 IQHGD------------PACR--LEEVIQLDMETDEPQ-----------PPENGNEDGHC 761
Query: 528 EMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGF---LQLKPFDFEAARKQ 584
E + + S SD + ++ F + N R + +++ P F + + PFD+ ARK
Sbjct: 762 ETEDTEMSKSPSDDPSGTEQRFRTLNEERNIQQNQKT--PREFELSVPVVPFDYAEARKN 819
Query: 585 IEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNR 644
+ + E+ + +SGDK+ S +D+G RRR AFP +GNR
Sbjct: 820 LVSSQPKAERRKDDAVARAINTDSGDKRIASKKPGGGEDEGN--FQHPRRRQAFPPSGNR 877
Query: 645 SATF 648
SAT+
Sbjct: 878 SATY 881
>gi|356571755|ref|XP_003554038.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 643
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/269 (73%), Positives = 232/269 (86%), Gaps = 1/269 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFV+DTLK+R VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIY+CNMFDT
Sbjct: 226 ISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDT 285
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQ+SRVLKL+R SL+YLL FCGV ANKEYQ+ADWR+RPLPD MLRY REDTHYLLYIYD
Sbjct: 286 GQSSRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYD 345
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+IKL ++ KESE SD PL EVYKRSYDVC QLYEKELL E+SYLHI+GL+GAG NAQQ
Sbjct: 346 LMRIKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAGFNAQQ 405
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL-KSKHSYIERY 239
LAVV+GL EWRD +ARADDE GYVLPNR ++EIA Q+P + LRR++ ++KH Y+ER
Sbjct: 406 LAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPYVERS 465
Query: 240 MGPVLSIIKNSMQNAANFEVIAQKLKEER 268
+ +++I+++SMQNAA FE A +LKEE
Sbjct: 466 LDVIVNIVRHSMQNAAAFEEAALRLKEEH 494
>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
Length = 642
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 194/276 (70%), Positives = 229/276 (82%), Gaps = 2/276 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VD KL +GPYLRE+FKDP KKKV+HGADRDI+WLQRDFGIY+CN+FDT
Sbjct: 158 ISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDT 217
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLKLERNSLE+LL H+CGV ANKEYQ ADWR+RPLPD M RYAREDTHYLLYIYD
Sbjct: 218 GQASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYD 277
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +SYLH+YG+Q LNA Q
Sbjct: 278 VMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQ 337
Query: 181 LAVVA--GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
L++VA GLCEWRD IARADDESTGYVLPN+TL +IAK++P A+LRRLLKSK Y+ER
Sbjct: 338 LSIVALQGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLLKSKLPYLER 397
Query: 239 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 398 NFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 433
>gi|356514082|ref|XP_003525736.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 506
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/265 (70%), Positives = 223/265 (84%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKL +GPYLREVFKDP+K+KVMHGAD D+VWLQRDFGIY+CN+FDT
Sbjct: 123 ISTRTEDFIVDTLKLHSSIGPYLREVFKDPSKRKVMHGADNDVVWLQRDFGIYICNLFDT 182
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QAS+VLKLER SLEYLL HFC + ANKEYQ+ADWR+RPLP EMLRYAREDTHYLLYIYD
Sbjct: 183 HQASKVLKLERKSLEYLLCHFCDITANKEYQSADWRLRPLPYEMLRYAREDTHYLLYIYD 242
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+I+L SM KE E+ D PL EVYK SY VC +LYEKELL+E S+L IYGLQGAG NAQQ
Sbjct: 243 FMRIELFSMLKEPESVDAPLVEVYKCSYKVCMRLYEKELLTEKSFLRIYGLQGAGFNAQQ 302
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVV+GL +WRD +AR D+STGYVLPN++++EIAKQ+P TA LR L+ S+H Y+E +
Sbjct: 303 LAVVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYVEHNL 362
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLK 265
+++II++S+QN A FE IAQ LK
Sbjct: 363 DSLVNIIRHSIQNTAAFEEIAQLLK 387
>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 341
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/307 (63%), Positives = 241/307 (78%), Gaps = 5/307 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR VG +LR+VF DPTKKKV+HGADRDIVWLQRDFGIY+CNMFDT
Sbjct: 35 ISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDT 94
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLK+ER SL++LL HFCGV ANKEYQNADWR RPLPD M++Y REDTHYLLYIYD
Sbjct: 95 GQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYD 154
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+IKL + KESE+ D PL EVY+RSY+VC QLYEK+LL+ENS+L+I GL+GAG N QQ
Sbjct: 155 LMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQ 214
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL--KSKHSYIER 238
LAVV+GL EWRDV+ARA+DESTGY+LPN+ ++ IAK +P TA+ LRRL+ +S+ Y+ER
Sbjct: 215 LAVVSGLYEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIAERSRLPYVER 274
Query: 239 YMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVD 298
V++I+++SM AA FE A +LKEE A E L L + N+ S
Sbjct: 275 NHDIVVNIVRHSMGKAAAFEEAALRLKEE--HAAFVEAAALRLKEEHAASVSNIS-NSCQ 331
Query: 299 GVDALVG 305
++ L+G
Sbjct: 332 FLELLLG 338
>gi|357508795|ref|XP_003624686.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
gi|355499701|gb|AES80904.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
Length = 832
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 239/496 (48%), Positives = 297/496 (59%), Gaps = 87/496 (17%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR VG +LR+VF DPTKKKV+HGADRDIVWLQRDFGIY+CNMFDT
Sbjct: 333 ISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFDT 392
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVLK+ER SL++LL HFCGV ANKEYQNADWR RPLPD M++Y REDTHYLLYIYD
Sbjct: 393 GQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYD 452
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+IKL + KESE+ D PL EVY+RSY+VC QLYEK+LL+ENS+L+I GL+GAG N QQ
Sbjct: 453 LMRIKLFELSKESESPDDPLLEVYQRSYNVCMQLYEKDLLTENSFLNIKGLRGAGFNGQQ 512
Query: 181 LAVVA-----------------------------------------------------GL 187
LAVV+ GL
Sbjct: 513 LAVVSGKTMVGSLQPQNTLLRRGKETQANGVPKVLIMVVSDQKNKIVACIASALGFCTGL 572
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL--KSKHSYIERYMGPVLS 245
EWRDV+ARA+DESTGY+LPN+ ++ IAK +P TA+ LRRL+ +S+ Y+ER V++
Sbjct: 573 YEWRDVLARAEDESTGYILPNKVILLIAKHMPVTASNLRRLIAERSRLPYVERNHDIVVN 632
Query: 246 IIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVG 305
I+++SM AA FE A +LKEE A E L L + NV SV+ G
Sbjct: 633 IVRHSMGKAAAFEEAALRLKEEH--AAFVEAAALRLKEEHAASVSNVA--SVED-----G 683
Query: 306 TTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQS 365
T P P+ + LK E GS I EN +IS S
Sbjct: 684 TEAPQSPSLS-LKDECAANGS-------------------IGIENATCVNISEKSLFSSD 723
Query: 366 RDLNACKSPSPRVTEAAVQALKKPNRGFGA-LLGNPKRKFDG--EKKDKEAMKLEQIKSS 422
+ +A K + VQALK P A LLGN + +G +KK K+ +K+EQ SS
Sbjct: 724 PNSSAVKLIGRQENGTNVQALKMPTVACDATLLGNSTSEGNGYPDKKGKKKIKVEQNVSS 783
Query: 423 VNLPFHSIFARDEQLK 438
+NLP HS +E+ K
Sbjct: 784 INLPSHSFLGNNEKSK 799
>gi|414871320|tpg|DAA49877.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 901
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 267/677 (39%), Positives = 376/677 (55%), Gaps = 112/677 (16%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF IY+CN+FDT
Sbjct: 306 ISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDT 365
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 366 GQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYD 425
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L + S + L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA Q
Sbjct: 426 LMRLRLVN---GSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNATQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L+V++ L WRD IARA+DESTGY+LPN+TL+EIAK++P T+ KL+R++KS++S +ER +
Sbjct: 483 LSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILERNL 542
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEV--------ASEETEVLVLDTSSNLKIPNV 292
V++ I++++ + FE I ++LK+ ++E +SE+TE++ N++ P+
Sbjct: 543 NHVINNIRDAIAASGAFESIVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDPSD 602
Query: 293 GRESVDGVDALVGTTMPHPPAYT--------QLKQEPPKVGSSVAELDRNGLGSFAHPGE 344
V V VG P T L+ PK S A GL
Sbjct: 603 ESAVVPAVITNVGAA----PCITSEASLGNMHLEDPVPKTKDSGASSGFTGL-------- 650
Query: 345 AIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK- 403
++NK+ LS+ Q + +A VQ K+P FGAL G
Sbjct: 651 ---TDNKK------LSNDQQ------------QAAKATVQVSKRPT-AFGALFGKAAAGR 688
Query: 404 ----FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFG 459
F G + K+++I SSV LPFH F+ +L + LP S
Sbjct: 689 RPDLFLGFSNVQGKTKVDKITSSVVLPFHH-FSGGAKL----------SSAALPAKESLH 737
Query: 460 SGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGE 519
S + I+ S+ PA + E++I L+ DE++ P E
Sbjct: 738 SEPDS---IQHSD------------PACQ--LEEVIQLDMGTDEQQ-----------PPE 769
Query: 520 DGSAGSALEMGKQDETMSLS---DLSTSFQECFHSANNNRKPGKPERSEEPSGF-LQLKP 575
+G+ +D MS S D S + Q F S N R + +++ F + + P
Sbjct: 770 NGNEDDG-HCETEDTEMSKSPSGDPSVTEQR-FRSLNEERNVKQNQKTPREFEFSVPVVP 827
Query: 576 FDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKE----LSQ 631
FD+ ARK + E+ + ++GDK++ S +K G E
Sbjct: 828 FDYAEARKNLVSSLPKAERRKDDAVARAINTDAGDKQRGS-----KKPPGGGENEGNFQH 882
Query: 632 GRRRSAFPATGNRSATF 648
RRR AFP +GNR+AT+
Sbjct: 883 PRRRQAFPPSGNRNATY 899
>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/434 (49%), Positives = 284/434 (65%), Gaps = 27/434 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDF++DTLKLR+ +G YL+E+FKDPTK+KVMHGADRDI+WLQRDF +Y+CN+FDT
Sbjct: 8 ISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLFDT 67
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTHYLLYIYD
Sbjct: 68 GQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYD 127
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L +ES + + L EV KRS D+C QLYEKELL++ SYLHIYGLQ L A Q
Sbjct: 128 LMRLRLQ---RESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQ 184
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVV+ L +WRD IAR DESTGYVLPN+ LIEIAK++PTT A LRR++KSK+ ++
Sbjct: 185 LAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKSKYPCVDDNF 244
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP-----NVGRE 295
+L + N+ +N+ FE IA++LK+ R+ E +LDT +++ NVG
Sbjct: 245 DLILDTVWNATENSGAFEAIAEQLKKVRL---GELDLKSILDTGEVIEMAPSDADNVGI- 300
Query: 296 SVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI-ASENKEAT 354
S D D P + ++ S + + G I +SENK +
Sbjct: 301 SFDPADQYSLA----PSSTANIRVTSNSRDSFMTDGTLTGSIWLHDKTSTIPSSENKTSW 356
Query: 355 HISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR-----KFDGEKK 409
+S L+ + S + + T AAV+ LK+P FGAL+GN F G
Sbjct: 357 SLSGLTGPSNKEVM----SNNKQETHAAVEELKRP-MPFGALVGNSTYGRQTDYFGGFPN 411
Query: 410 DKEAMKLEQIKSSV 423
++ L+QI+SS
Sbjct: 412 EQAQSGLDQIQSSA 425
>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/433 (49%), Positives = 283/433 (65%), Gaps = 27/433 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDF++DTLKLR+ +G YL+E+FKDPTK+KVMHGADRDI+WLQRDF +Y+CN+FDT
Sbjct: 76 ISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLFDT 135
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTHYLLYIYD
Sbjct: 136 GQASRVLQMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYD 195
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L +ES + + L EV KRS D+C QLYEKELL++ SYLHIYGLQ L A Q
Sbjct: 196 LMRLRLQ---RESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQ 252
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVV+ L +WRD IAR DESTGYVLPN+ LIEIAK++PTT A LRR++KSK+ ++
Sbjct: 253 LAVVSALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKSKYPCVDDNF 312
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIP-----NVGRE 295
+L + N+ +N+ FE IA++LK+ R+ E +LDT +++ NVG
Sbjct: 313 DLILDTVWNATENSGAFEAIAEQLKKVRL---GELDLKSILDTGEVIEMAPSDADNVGI- 368
Query: 296 SVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAI-ASENKEAT 354
S D D P + ++ S + + G I +SENK +
Sbjct: 369 SFDPADQYSLA----PSSTANIRVTSNSRDSFMTDGTLTGSIWLHDKTSTIPSSENKTSW 424
Query: 355 HISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKR-----KFDGEKK 409
+S L+ S + + T AAV+ LK+P FGAL+GN F G
Sbjct: 425 SLSGLTGPSNKE----VMSNNKQETHAAVEELKRP-MPFGALVGNSTYGRQTDYFGGFPN 479
Query: 410 DKEAMKLEQIKSS 422
++ L+QI+SS
Sbjct: 480 EQAQSGLDQIQSS 492
>gi|356514085|ref|XP_003525737.1| PREDICTED: LOW QUALITY PROTEIN: exosome component 10-like [Glycine
max]
Length = 429
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/265 (66%), Positives = 217/265 (81%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKL +GPYLREVFKD + +KVMHGAD D++WLQRDFGIY+CN+FDT
Sbjct: 117 ISTRTEDFIVDTLKLHSSIGPYLREVFKDLSNRKVMHGADNDVMWLQRDFGIYICNLFDT 176
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QAS+VLKLER SL+YLL HFC + ANKEYQ+ADWR+RPLP EM+RYAREDTHYLLYIYD
Sbjct: 177 HQASKVLKLERRSLKYLLCHFCDITANKEYQSADWRLRPLPYEMVRYAREDTHYLLYIYD 236
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+I+L SM E E+ D PL EVYK SY VC +LYEK LL+E S+L IYGLQGAG AQQ
Sbjct: 237 LMRIELFSMLNEPESVDAPLVEVYKCSYKVCMRLYEKXLLTEKSFLRIYGLQGAGFTAQQ 296
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L +V+GL +WRD +AR D+STGYVLPN++++EIAKQ+P TA LR L+ S+H Y+E +
Sbjct: 297 LVIVSGLFKWRDFVARVKDDSTGYVLPNKSILEIAKQMPVTANNLRLLVNSRHPYVEHNL 356
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLK 265
++ II++S+QN + FE IAQ LK
Sbjct: 357 DSLVDIIRHSIQNTSAFEEIAQLLK 381
>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
Group]
gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
Length = 600
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/354 (54%), Positives = 261/354 (73%), Gaps = 16/354 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFVVDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 188 ISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 247
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LL HFCGV ANKEYQNADWR RPL DEM++YAREDTHYLLY+YD
Sbjct: 248 GQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYD 307
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L KES + + L EV KRS ++C QLYEKELL++ SYLHIYGLQ L+A+Q
Sbjct: 308 LMRLRLQ---KESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQ 364
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVV L +WRD IAR DESTGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ +
Sbjct: 365 LAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENL 424
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRE 295
V+ II N+ +++ FE A++LK+ER+E ++ + + + TS NL +I ++ +E
Sbjct: 425 DQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKE 484
Query: 296 SV-DGVDALVGTTMPHPPAYTQLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 346
+ D + V + +LK+ VG+S + R+ G F++ E +
Sbjct: 485 ILSDNIHQQVAQA-----TFQELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKM 533
>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
Length = 599
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/354 (54%), Positives = 261/354 (73%), Gaps = 16/354 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFVVDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 187 ISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 246
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LL HFCGV ANKEYQNADWR RPL DEM++YAREDTHYLLY+YD
Sbjct: 247 GQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYD 306
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L KES + + L EV KRS ++C QLYEKELL++ SYLHIYGLQ L+A+Q
Sbjct: 307 LMRLRLQ---KESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQ 363
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVV L +WRD IAR DESTGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ +
Sbjct: 364 LAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENL 423
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRE 295
V+ II N+ +++ FE A++LK+ER+E ++ + + + TS NL +I ++ +E
Sbjct: 424 DQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKE 483
Query: 296 SV-DGVDALVGTTMPHPPAYTQLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 346
+ D + V + +LK+ +G+S + R+ G F++ E +
Sbjct: 484 ILSDNIHQQVAQA-----TFQELKRPMALGAIGNSTSGGQRDFFGGFSNKSEKM 532
>gi|293334443|ref|NP_001170525.1| uncharacterized protein LOC100384536 [Zea mays]
gi|238005848|gb|ACR33959.1| unknown [Zea mays]
gi|414864884|tpg|DAA43441.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 666
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/431 (49%), Positives = 278/431 (64%), Gaps = 44/431 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 194 ISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 253
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYIYD
Sbjct: 254 GQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYD 313
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ +L +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+Q
Sbjct: 314 LMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDARQ 370
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E +
Sbjct: 371 LAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNL 430
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-----EVLVLDTSSNLKIPNVGRE 295
+ + N+++ + FE IA++LK+ER+E + ++ EV LD ++ R
Sbjct: 431 ELIAYTVWNALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPLDA-------DIDRS 483
Query: 296 SVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATH 355
+ D D +VA R G S A +I E+K T
Sbjct: 484 NFDSSDQ--------------------SANVNVASGSRAGFMSEAALISSIHLEDKTQTM 523
Query: 356 ISTLSSS---GQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKE 412
S +S GQ R +N S + + A+Q L + AL GN GE ++
Sbjct: 524 SSVKTSQTLLGQIRPVNK-DVLSNNIHQQAIQDL---SLTLKALKGNLAS--GGESNEQA 577
Query: 413 AMKLEQIKSSV 423
+ +E +SSV
Sbjct: 578 GINVENFRSSV 588
>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
Length = 702
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/306 (59%), Positives = 235/306 (76%), Gaps = 15/306 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 194 ISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 253
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYIYD
Sbjct: 254 GQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYD 313
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ +L KES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+Q
Sbjct: 314 LMRQRLQ---KESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDAKQ 370
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E +
Sbjct: 371 LAVVAALHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNL 430
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-----EVLVLDTSSNLKIPNVGRE 295
+ + N+++ + +E IA++LK+ER+E + ++ EV LD ++GR
Sbjct: 431 ELIAYTVWNALKYSYAYEGIAEQLKKERLEQLALKSGQASDEVTPLDA-------DIGRS 483
Query: 296 SVDGVD 301
+ D D
Sbjct: 484 NFDSSD 489
>gi|357120688|ref|XP_003562057.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 690
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/269 (64%), Positives = 221/269 (82%), Gaps = 3/269 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ +GPYL++ FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 194 ISTRTEDFIVDTLKLRIYLGPYLQKHFKDPTKRKVMHGADRDIIWLQRDFRIYVCNLFDT 253
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LLHHFCGV ANK YQNADWR RPL DEM++YAREDTHYLLYIYD
Sbjct: 254 GQASRVLQMERNSLEHLLHHFCGVTANKVYQNADWRSRPLSDEMIKYAREDTHYLLYIYD 313
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L KES + L EV RS ++C QLYEKELL++ SYLHIYGLQ L A Q
Sbjct: 314 LMRLRLQ---KESTCENDLLLEVQNRSNEICLQLYEKELLTDTSYLHIYGLQEHELEAAQ 370
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVV+ L +WRD AR +DESTGYVLPN+ LIEIAK++PT+ A+L+R++KSK+ ++E
Sbjct: 371 LAVVSALHQWRDYTARQEDESTGYVLPNKALIEIAKKMPTSTAELQRIVKSKYPFVEANF 430
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERM 269
+L I+ N+ +N+ FE IA++LK+ R+
Sbjct: 431 DVILDIVWNATENSEAFEAIAEQLKKARL 459
>gi|414864885|tpg|DAA43442.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 577
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/270 (64%), Positives = 221/270 (81%), Gaps = 3/270 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 194 ISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 253
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL++ERNSLE+LL HFCGV A KEYQNADWR RPLPDEM++YAREDTHYLLYIYD
Sbjct: 254 GQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYD 313
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ +L +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+Q
Sbjct: 314 LMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDARQ 370
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAVVA L EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E +
Sbjct: 371 LAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNL 430
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+ + N+++ + FE IA++LK+ER+E
Sbjct: 431 ELIAYTVWNALEYSYAFEGIAEQLKKERLE 460
>gi|414871321|tpg|DAA49878.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 532
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/210 (68%), Positives = 177/210 (84%), Gaps = 3/210 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTLKLR +G YLRE F+DPTKKKVMHGA RDI+WLQRDF IY+CN+FDT
Sbjct: 306 ISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDT 365
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQAS+VL+++RNSLE+LLHHFCGV ANKEYQ ADWR+RPLPDEM++YAREDTHYLLYIYD
Sbjct: 366 GQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYD 425
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+++L + S + L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA Q
Sbjct: 426 LMRLRLVN---GSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNATQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRT 210
L+V++ L WRD IARA+DESTGY+LPN+T
Sbjct: 483 LSVLSSLYRWRDGIARAEDESTGYILPNKT 512
>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
Length = 512
Score = 298 bits (762), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 134/250 (53%), Positives = 184/250 (73%), Gaps = 4/250 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R++DF+VDTL LR +GP LR VF +P+ +KV+HG+DRDI+WLQRDFGIY+CN+FDT
Sbjct: 267 VSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDT 326
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL++ER L +LL FCGV +K YQ ADWR+RPL EML+YAREDTHYLLY+YD
Sbjct: 327 GQAARVLRMERFGLAFLLQTFCGVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYD 386
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK M +++E ++ EV +RS D+C QLYEKEL +E+S+LHIYGL L ++
Sbjct: 387 KMK----GMLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTPEK 442
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGL WRD + R++DESTGY+LPN L +A+ P A +L+ +L+ H +
Sbjct: 443 LAIVAGLYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDAKRLQGILRRGHPVAAFHS 502
Query: 241 GPVLSIIKNS 250
+L +I+++
Sbjct: 503 AALLKVIRDA 512
>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
Length = 512
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 182/250 (72%), Gaps = 4/250 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R++DF+VDTL LR +GP LR VF +P+ +KV+HG+DRDI+WLQRDFGIY+CN+FDT
Sbjct: 267 VSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDT 326
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL++ER L +LL FC V +K YQ ADWR+RPL EML+YAREDTHYLLY+YD
Sbjct: 327 GQAARVLRMERFGLAFLLQTFCEVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYD 386
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK + +++E ++ EV +RS D+C QLYEKEL +E+S+LHIYGL L ++
Sbjct: 387 KMK----GLLRDAETTEDLYLEVCQRSRDLCLQLYEKELFTESSFLHIYGLAEKNLTPEK 442
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+VAGL WRD + R++DESTGY+LPN L +A+ P +L+ +L+ H +
Sbjct: 443 LAIVAGLYAWRDKLCRSEDESTGYILPNSLLFRLAEDAPQDVKRLQGILRRGHPVAAFHS 502
Query: 241 GPVLSIIKNS 250
+L +I+++
Sbjct: 503 AALLKVIRDA 512
>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 135/250 (54%), Positives = 189/250 (75%), Gaps = 2/250 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDF+VD L LR +GP L+++F D KKVMHGADRDI WLQRDFGIY+CNMFDT
Sbjct: 265 VSTRSEDFIVDALALRSHMGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDT 324
Query: 61 GQ-ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
GQ A+RVL+LE L +L+ F +N +K YQ ADWR+RPLP EM++YAREDTHYLLY+Y
Sbjct: 325 GQQAARVLQLEGFGLAFLMQRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLYLY 384
Query: 120 DIMKIKLSSMPKESEN-SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
D++++ L SM + N +D P+ +VYKRS D+C ++Y+K++L+E SYL +YGLQ N+
Sbjct: 385 DLLRVVLVSMRSTAGNDADDPVLQVYKRSRDICLKMYKKDILTETSYLSLYGLQDKNFNS 444
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
+Q++V+AGL WRD +AR DESTG+VLPN+ L ++A+++P TA L+ ++ HS + +
Sbjct: 445 EQMSVLAGLYAWRDNLARKLDESTGFVLPNQLLYKLAEEMPDTARTLQIAIRGPHSVVGQ 504
Query: 239 YMGPVLSIIK 248
Y VL +I+
Sbjct: 505 YTAEVLEVIR 514
>gi|449268441|gb|EMC79305.1| Exosome component 10, partial [Columba livia]
Length = 829
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 158/219 (72%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMFDT
Sbjct: 296 ISTRTEDFIIDTLELRSDMN-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDT 354
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C ++A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD
Sbjct: 355 HQAARLLNLGRHSLDHLLKLYCNIDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYD 414
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN QQ
Sbjct: 415 KVR---EALWERGNEQPTQLQVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQ 471
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LA L WRD +AR +DESTGYVLPN L++IA++LP
Sbjct: 472 LAAFRLLFAWRDKMARQEDESTGYVLPNHMLLKIAEELP 510
>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
Length = 945
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 153/226 (67%), Gaps = 5/226 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED V+DTL +R + +LREVF +P KV HGAD D+VWLQ DFGIY NMFDT
Sbjct: 336 VSTRTEDVVIDTLAVRSSMH-HLREVFANPNILKVFHGADMDVVWLQHDFGIYTINMFDT 394
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL+L SL +LL +FC V A+K+YQ ADWR+RP+P EML+YAREDTHYLLYIYD
Sbjct: 395 GQAARVLELGSYSLAHLLRYFCNVTADKKYQLADWRIRPIPAEMLQYAREDTHYLLYIYD 454
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSYLHIYGLQGAGLNAQ 179
++ +L S ES N L Y +S DVC + YEK L ENS++ ++ Q
Sbjct: 455 RLRNELVSRSNESSNL---LRVAYAKSRDVCLKTYEKPLFDPENSHMQLFLKHSRTFGPQ 511
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
Q+ V L WRD + R +DESTGYVLPN L IA+ LPT +A +
Sbjct: 512 QMQVFKALFAWRDRMGREEDESTGYVLPNHMLFHIAEALPTESAGI 557
>gi|110739343|dbj|BAF01584.1| hypothetical protein [Arabidopsis thaliana]
Length = 377
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 137/171 (80%)
Query: 104 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 163
M RYAREDTHYLLYIYD+M+++L +M KE E SD+PL EVYKRSYDVC QLYEKEL + +
Sbjct: 1 MKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYDVCMQLYEKELWTRD 60
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
SYLH+YG+Q LNA QL++VAGLCEWRD IARADDESTGYVLPN+TL +IAK++P A
Sbjct: 61 SYLHVYGVQTGNLNAVQLSIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVA 120
Query: 224 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
+LRRLLKSK Y+ER V+S+I+ SMQNAA FE + Q LK+ R E E
Sbjct: 121 QLRRLLKSKLPYLERNFDAVISVIRRSMQNAAAFEPVVQSLKDRRPETVVE 171
>gi|147776669|emb|CAN74351.1| hypothetical protein VITISV_038575 [Vitis vinifera]
Length = 452
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 258/480 (53%), Gaps = 76/480 (15%)
Query: 218 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET- 276
+P T +KLRRLLKSKH Y+ER +GPV+SII++S+ NAA FE AQ LKE + ASE+
Sbjct: 1 MPVTTSKLRRLLKSKHPYVERNLGPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNT 60
Query: 277 ------EVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAE 330
E L ++ ++++ + ES D + + G + K+ + GS++
Sbjct: 61 VDTTGFEALPSESPTSIRAADARAESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDG 120
Query: 331 LDRNGLGSFAHP-GEAIASENKEATHI-----STLSSSGQSRDLNA--CKSPSPRVTEAA 382
G G + P GE+ ++++ + I T +SSGQSRD + S S +VTE
Sbjct: 121 PGSKGQGGSSEPPGESKEVKDEKDSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVT 180
Query: 383 VQALKKPNRGFGALLGNP--KRKFDGEKK-------------------------DKEAMK 415
VQ LKKPNR FG+LLGN KRK + + K KE +K
Sbjct: 181 VQLLKKPNRAFGSLLGNSASKRKLNSDPKVCNSDWVSLAQPVKMQDWVEECPLBGKEDIK 240
Query: 416 LEQIKSSVNLPFHSIFARD-EQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRV 474
LEQIKSSVNLPFHS + E+L +D EE +V
Sbjct: 241 LEQIKSSVNLPFHSFSGGNREELSKLDT--------------------------EEHTKV 274
Query: 475 TVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---GEDGSAGSALEM 529
SEEP PA+R D E+II E++ +E GN A+ ED GS LEM
Sbjct: 275 LETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGKEDNPKGSGLEM 334
Query: 530 GKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGE 589
+ +E MSL+DLS+ FQ+C S N RK + E+S+E +G LQ+KPFD+EAARKQ+ FGE
Sbjct: 335 DEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDYEAARKQVRFGE 394
Query: 590 DAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 649
D E+S G +G + V+S KK+ + Q +D T + +QGRRR AFPATGNRS TFR
Sbjct: 395 DP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAFPATGNRSVTFR 452
>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 162/250 (64%), Gaps = 4/250 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R DF+VDTL+LR + L E F +P KV HGAD D+ WLQRDFGIY+ NMFDT
Sbjct: 293 ISTRDHDFLVDTLELRNDLH-LLNESFTNPNILKVFHGADMDVGWLQRDFGIYVVNMFDT 351
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL LER SL +LL FCGV A+K+YQ ADWR+RPLP+EM+RYAREDTHYLLYI+D
Sbjct: 352 GQASRVLALERFSLAFLLKKFCGVTADKQYQLADWRIRPLPEEMIRYAREDTHYLLYIHD 411
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L E+ N L VY RS +VC++ YEK L + SY+++Y Q LN Q
Sbjct: 412 RLRNELIRTGNENNNL---LLSVYSRSTEVCQKHYEKPLFTSESYMNLYTKQRRPLNPVQ 468
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L L WRD IAR +DES GYVLPN L IA+ LP + + +++Y+
Sbjct: 469 LRAFRALYAWRDTIARREDESYGYVLPNHMLFTIAETLPREPQGVLACCNPVPTLVKQYV 528
Query: 241 GPVLSIIKNS 250
V +I S
Sbjct: 529 NEVHQLILQS 538
>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
Length = 910
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 156/219 (71%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMFDT
Sbjct: 349 ISTRTEDFIIDTLELRSDMS-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDT 407
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L ++SL++LL +C V+A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD
Sbjct: 408 HQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYD 467
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN QQ
Sbjct: 468 KMR---EALWERGNEQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQ 524
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LA L WRD AR +DES GYVLPN L++IA++LP
Sbjct: 525 LAAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELP 563
>gi|344283517|ref|XP_003413518.1| PREDICTED: exosome component 10 isoform 1 [Loxodonta africana]
Length = 887
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL H+CGV +NK+YQ ADWR+RPLPDEML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---VQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|344283519|ref|XP_003413519.1| PREDICTED: exosome component 10 isoform 2 [Loxodonta africana]
Length = 862
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL H+CGV +NK+YQ ADWR+RPLPDEML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKHYCGVESNKQYQLADWRIRPLPDEMLHYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---VQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFSWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
Length = 888
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 155/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP KV+HGAD D+ WLQ+DFG+YL NMFDT
Sbjct: 327 ISTRTEDFIIDTLELRSDMS-ILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDT 385
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L ++SL++LL +C V+A+K+YQ ADWR+RPLP+EM++YAR+DTHYLLYIYD
Sbjct: 386 HQAARLLNLGKHSLDHLLKLYCSVDADKQYQLADWRIRPLPEEMIQYARDDTHYLLYIYD 445
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ ++ + T L V++RS D+C + Y K L S+ SYL +Y Q LN QQ
Sbjct: 446 KMR---EALWEGGNKQPTQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKRHLNTQQ 502
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN L++IA++LP
Sbjct: 503 LTAFRLLFSWRDKTARQEDESIGYVLPNHMLLKIAEELP 541
>gi|345327688|ref|XP_003431189.1| PREDICTED: exosome component 10 [Ornithorhynchus anatinus]
Length = 864
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR ++ L E F DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 304 ISTRTEDFIIDTLELRSELY-ILNESFTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDT 362
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL+YLL H+C V A+K+YQ ADWR+RPLP EML YAR+DTHYLL++YD
Sbjct: 363 HQAARLLNLGRHSLDYLLKHYCNVEADKQYQLADWRIRPLPREMLNYARDDTHYLLFVYD 422
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M++ L E L V++RS D+C + + K + +E SYL +Y LN QQ
Sbjct: 423 KMRLDLWERGNE---QPVQLQVVWQRSKDICLKRFIKPIFTEESYLELYKKHKKHLNTQQ 479
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 480 LTAFQLLFSWRDKTARKEDESFGYVLPNHMMLKIAEELP 518
>gi|351713711|gb|EHB16630.1| Exosome component 10 [Heterocephalus glaber]
Length = 882
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL+YLL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDYLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 KMRLELWERGNEQP---TQLQAVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFSWRDKTARREDESFGYVLPNHMMLKIAEELP 545
>gi|354502290|ref|XP_003513220.1| PREDICTED: exosome component 10 isoform 1 [Cricetulus griseus]
Length = 885
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 156/221 (70%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 450 RMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQLA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|354502292|ref|XP_003513221.1| PREDICTED: exosome component 10 isoform 2 [Cricetulus griseus]
Length = 860
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 156/221 (70%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 450 RMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQLA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|432098121|gb|ELK28008.1| Exosome component 10 [Myotis davidii]
Length = 876
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 320 ISTRTEDFIVDTLELRSDLY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 378
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL H+C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 379 HQAARLLNLGRHSLDHLLKHYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 438
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 439 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 495
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 496 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 534
>gi|392340770|ref|XP_003754164.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|392348528|ref|XP_003750136.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
Length = 885
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 450 RMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|392340772|ref|XP_003754165.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
gi|392348530|ref|XP_003750137.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
Length = 860
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 155/221 (70%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+++L +D P L V++RS D+C + + K + ++ SYL +Y Q LN+
Sbjct: 450 RMRLELW-----ERGNDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNS 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
Length = 916
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 334 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 392
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 393 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 452
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 453 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 509
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 510 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 548
>gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
Length = 887
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
gi|341940669|sp|P56960.2|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
autoantigen 2 homolog
Length = 887
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
Length = 887
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
Length = 864
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 333 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 391
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 392 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 451
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 452 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 508
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 509 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 547
>gi|359319087|ref|XP_535408.4| PREDICTED: exosome component 10 isoform 2 [Canis lupus familiaris]
Length = 886
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L V++RS D+C + + K L ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
Length = 862
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|359319089|ref|XP_003638993.1| PREDICTED: exosome component 10 isoform 1 [Canis lupus familiaris]
Length = 861
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DPT KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L V++RS D+C + + K L ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|355686789|gb|AER98187.1| exosome component 10 [Mustela putorius furo]
Length = 732
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 207 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 265
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 266 HQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLHYARDDTHYLLYIYD 325
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 326 KMRLELWERGNEQP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNTQQ 382
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 383 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 421
>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
Length = 831
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 883
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED+++D L+LR + L E F +P+ KV+HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 327 ISTRTEDYIIDVLELRSNMY-ILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIVNMFDT 385
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V ++K YQ ADWR+RPLP+EM+ YAR DTHYLL+IYD
Sbjct: 386 HQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYLLFIYD 445
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ L E +N L V+++S D+C + + K + +E+SYL +Y Q LN QQ
Sbjct: 446 KMRTALLGAANEQQNL---LQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNTQQ 502
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD IAR +DESTGYVLPN L++I ++LP
Sbjct: 503 LTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELP 541
>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
melanoleuca]
Length = 887
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L ++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|348041370|ref|NP_998833.2| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 890
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED+++D L+LR + L E F +P+ KV+HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 334 ISTRTEDYIIDVLELRSNMY-ILNESFTNPSIIKVLHGADSDIEWLQKDFGLYIVNMFDT 392
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V ++K YQ ADWR+RPLP+EM+ YAR DTHYLL+IYD
Sbjct: 393 HQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMIEYARADTHYLLFIYD 452
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ L E +N L V+++S D+C + + K + +E+SYL +Y Q LN QQ
Sbjct: 453 KMRTALLGAANEQQNL---LQLVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHLNTQQ 509
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD IAR +DESTGYVLPN L++I ++LP
Sbjct: 510 LTAFRLLFAWRDKIARQEDESTGYVLPNHMLLKITEELP 548
>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
melanoleuca]
Length = 885
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 354 ISTRTEDFIIDTLELRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDT 412
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 413 HQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 472
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L ++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 473 KMRLELWERGNEQP---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNTQQ 529
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 530 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 568
>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 isoform 1 [Equus caballus]
Length = 886
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 153/221 (69%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VDTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRREDFIVDTLELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+++L +D P L V++RS DVC + + K + ++ SYL +Y Q LN
Sbjct: 450 KMRLELW-----ERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|338722160|ref|XP_003364495.1| PREDICTED: exosome component 10 isoform 2 [Equus caballus]
Length = 861
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 153/221 (69%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VDTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRREDFIVDTLELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKRYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+++L +D P L V++RS DVC + + K + ++ SYL +Y Q LN
Sbjct: 450 KMRLELW-----ERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHLNT 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 QQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|395521908|ref|XP_003765056.1| PREDICTED: exosome component 10 [Sarcophilus harrisii]
Length = 992
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 438 ISTRTEDFIIDTLELRCDLY-ILNESFTDPAIVKVFHGADMDIEWLQKDFGLYVVNMFDT 496
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V NK+YQ ADWR+RPLP+EM YAR DTHYLLYIYD
Sbjct: 497 HQAARILNLGRHSLDHLLKLYCNVETNKQYQLADWRIRPLPEEMFNYARHDTHYLLYIYD 556
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ S + + + L V++RS D+C + + K + +E+SYL +Y Q LN QQ
Sbjct: 557 KMR---SDLWERANGQPAQLQVVWQRSKDICLKKFIKPIFTEDSYLELYRKQKKHLNTQQ 613
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 614 LTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 652
>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
Length = 834
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR ++ L E DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSEMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E L ++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---VQLQVAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
Length = 883
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED+++D L+LR + L E F +P+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 327 ISTRTEDYIIDVLELRSNLY-ILNESFTNPSIIKVFHGADSDIEWLQKDFGLYIVNMFDT 385
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V ++K YQ ADWR+RPLP+EML YAR DTHYLLYIYD
Sbjct: 386 HQAARILNLGRHSLDHLLRLYCNVESDKRYQLADWRIRPLPEEMLEYARVDTHYLLYIYD 445
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+I L N L V++RS D+C + + K + +E SYL +Y Q LN QQ
Sbjct: 446 KMRIALLDAANGQPNL---LQLVWQRSKDICLKRFTKLIFTEESYLDLYQKQKKHLNTQQ 502
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD IAR +DESTGYVLPN L++IA++LP
Sbjct: 503 LTAFRLLFAWRDKIARREDESTGYVLPNHMLMKIAEELP 541
>gi|426239734|ref|XP_004013774.1| PREDICTED: exosome component 10 isoform 1 [Ovis aries]
Length = 887
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-VLNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|426239736|ref|XP_004013775.1| PREDICTED: exosome component 10 isoform 2 [Ovis aries]
Length = 862
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-VLNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
Length = 705
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 308 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 366
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 367 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 426
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 427 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 483
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 484 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 522
>gi|348571393|ref|XP_003471480.1| PREDICTED: exosome component 10-like isoform 1 [Cavia porcellus]
Length = 885
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR ++ L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFLVDTLELRSEMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWRVRPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 KMRLDLWERGNEQP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|126328718|ref|XP_001364197.1| PREDICTED: exosome component 10 isoform 1 [Monodelphis domestica]
Length = 861
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 307 ISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGADMDIEWLQKDFGLYVVNMFDT 365
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EM YAR DTHYLLYIYD
Sbjct: 366 HQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMFNYARHDTHYLLYIYD 425
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ S + + L V++RS D+C + + K + E+SYL +Y Q LN QQ
Sbjct: 426 KMR---SDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQKKHLNTQQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 483 LTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 521
>gi|126328720|ref|XP_001364275.1| PREDICTED: exosome component 10 isoform 2 [Monodelphis domestica]
Length = 836
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP+ KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 307 ISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGADMDIEWLQKDFGLYVVNMFDT 365
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EM YAR DTHYLLYIYD
Sbjct: 366 HQAARILNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMFNYARHDTHYLLYIYD 425
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ S + + L V++RS D+C + + K + E+SYL +Y Q LN QQ
Sbjct: 426 KMR---SDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQKKHLNTQQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 483 LTAFQLLYSWRDRTARREDESYGYVLPNHMMLKIAEELP 521
>gi|426327783|ref|XP_004024690.1| PREDICTED: exosome component 10 [Gorilla gorilla gorilla]
Length = 909
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K L ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPLFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|348571395|ref|XP_003471481.1| PREDICTED: exosome component 10-like isoform 2 [Cavia porcellus]
Length = 860
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR ++ L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFLVDTLELRSEMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWRVRPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLRLYCGVESNKQYQLADWRVRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 KMRLDLWERGNEQP---VQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|444728183|gb|ELW68647.1| Serine/threonine-protein kinase mTOR [Tupaia chinensis]
Length = 3780
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 3020 ISTRTEDFIIDTLELRSDMY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 3078
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 3079 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 3138
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + N L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 3139 KMRLELW---ERGGNQPVQLQVVWQRSRDICLKKFLKPIFTDESYLELYRKQKKHLNTQQ 3195
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 3196 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 3234
>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
Length = 886
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 155/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR ++ L E +PT KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 328 VSTRTEDFIIDTLELRSEMY-LLNESLTNPTIVKVFHGADSDIEWLQKDFGLYVVNMFDT 386
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V+++K+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 387 HQAARLLNLGRHSLDHLLKLYCSVDSDKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 446
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 447 RMRLELWERGNEQP---TQLQVVWQRSRDLCLKKFIKPIFTDESYLELYRKQKKHLNTQQ 503
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 504 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 542
>gi|431906334|gb|ELK10531.1| Exosome component 10 [Pteropus alecto]
Length = 883
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 325 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 383
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 384 HQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 443
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 444 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 500
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 501 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 539
>gi|403289992|ref|XP_003936119.1| PREDICTED: exosome component 10 [Saimiri boliviensis boliviensis]
Length = 884
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 329 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 388 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 447
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + S L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 448 KMRLELW---ERSNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 504
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 505 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 543
>gi|402852919|ref|XP_003891154.1| PREDICTED: exosome component 10 [Papio anubis]
Length = 844
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 291 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 349
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 350 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 409
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 410 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 466
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 467 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 505
>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
Length = 899
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|395841111|ref|XP_003793392.1| PREDICTED: exosome component 10 [Otolemur garnettii]
Length = 881
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 154/223 (69%), Gaps = 12/223 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFV+DTL+LR + L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 326 ISTRTEDFVIDTLELRSDLY-ILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 384
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 385 HQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 444
Query: 121 IMKIKL----SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
M+++L P +S+ V++RS D+C + + K + ++ SYL +Y Q L
Sbjct: 445 KMRLELWERGGGRPVQSQ-------VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 497
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
N QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 498 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 540
>gi|397503016|ref|XP_003822132.1| PREDICTED: exosome component 10 [Pan paniscus]
Length = 909
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
Length = 909
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|355744909|gb|EHH49534.1| hypothetical protein EGM_00210 [Macaca fascicularis]
Length = 887
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|410215482|gb|JAA04960.1| exosome component 10 [Pan troglodytes]
gi|410256428|gb|JAA16181.1| exosome component 10 [Pan troglodytes]
gi|410289248|gb|JAA23224.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
Length = 912
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
gi|8928564|sp|Q01780.2|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 100 kDa;
Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
autoantigen 2
gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
Length = 885
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
gi|355557539|gb|EHH14319.1| hypothetical protein EGK_00224 [Macaca mulatta]
Length = 884
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410215484|gb|JAA04961.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
Length = 884
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|410350403|gb|JAA41805.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|343962561|dbj|BAK62868.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410256430|gb|JAA16182.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
Length = 884
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 355 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 413
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 414 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 473
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 474 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 530
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 569
>gi|380813852|gb|AFE78800.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419271|gb|AFH32849.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947746|gb|AFI37478.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 884
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
Length = 860
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410966020|ref|XP_003989536.1| PREDICTED: exosome component 10 isoform 1 [Felis catus]
Length = 887
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK++Q ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNQQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|380813854|gb|AFE78801.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419273|gb|AFH32850.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947748|gb|AFI37479.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 882
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|335290492|ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa]
Length = 886
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLALWERGNEQPAQ---LQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|410966022|ref|XP_003989537.1| PREDICTED: exosome component 10 isoform 2 [Felis catus]
Length = 862
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK++Q ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVESNKQFQLADWRIRPLPEEMLNYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNQQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|335290494|ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa]
Length = 861
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M++ L E L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLALWERGNEQPAQ---LQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|432864718|ref|XP_004070425.1| PREDICTED: exosome component 10-like [Oryzias latipes]
Length = 890
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 148/221 (66%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DPT KV HGAD DI WLQRDFG+Y+ N+FDT
Sbjct: 331 ISTRDEDFIIDTLELRSEMY-ILNEAFTDPTIVKVFHGADSDIEWLQRDFGLYVVNLFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
Q SR L L RNSL++LL HFC V+++K YQ ADWR+RPLPDEM++YAR DTHYLLYIYD
Sbjct: 390 HQGSRALHLARNSLDHLLRHFCNVDSDKRYQLADWRIRPLPDEMVQYARTDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
++ +L N P L V+ +S D+ Y K + +E+SYL + Q N
Sbjct: 450 CVRAQLL-----DSNHGQPGLLQSVWNKSKDISLTKYMKPVFTEDSYLEVLRKQKRSFNT 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD +AR +DESTGY LP +I+I+++LP
Sbjct: 505 QQLTAFRLLFAWRDKLARQEDESTGYTLPIHMMIKISEELP 545
>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
gi|296479174|tpg|DAA21289.1| TPA: exosome component 10 [Bos taurus]
Length = 702
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L E T L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWERGNEQP---TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
Length = 832
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 144/219 (65%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL LR + L + F DP KV HGAD DI WLQRDFG+Y+ NMFDT
Sbjct: 316 VSTRDHDYIVDTLALRADLH-VLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDT 374
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQAS VL L R+SL YLL +C V +K+YQ ADWR+RPLP EM +YAREDTHYLL+IYD
Sbjct: 375 GQASHVLGLPRHSLAYLLKTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYD 434
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ S + N L +RS VC Q Y+K L +E+SYL++ N+QQ
Sbjct: 435 CMR---SELLDRGNNEANLLHNTLERSRQVCLQRYQKLLYTEDSYLNLLNKHKKTFNSQQ 491
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L V + WRD IAR +DESTGYVLPN L+ +A+ LP
Sbjct: 492 LHAVRLVYRWRDTIARQEDESTGYVLPNHMLLVLAETLP 530
>gi|348514838|ref|XP_003444947.1| PREDICTED: exosome component 10 [Oreochromis niloticus]
Length = 892
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 150/221 (67%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DP+ KV HGAD DI WLQRDFG+Y+ N+FDT
Sbjct: 331 ISTRGEDFIIDTLELRSEMY-ILNEAFTDPSIVKVFHGADSDIEWLQRDFGLYVVNLFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QASR L L R+SL++LL HFC V+++K YQ ADWRVRPLPDEM++YAR DTHYLLYIYD
Sbjct: 390 HQASRALNLARHSLDHLLKHFCSVDSDKRYQLADWRVRPLPDEMVQYARTDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
++++L N P L V+ +S + + Y K + +E SYL + Q N
Sbjct: 450 CVRVQLLDF-----NHGQPGLLQSVWNKSRSISLKKYVKPIYTEESYLELQRKQKKSFNT 504
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQL L WRD +AR +DESTGYVLP +I+I+++LP
Sbjct: 505 QQLTAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELP 545
>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
Length = 329
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++D L+LR + L E F DP KV+HGAD D+ WLQRDFG+YL N+FDT
Sbjct: 115 ISTRTEDFILDALELRGDLY-VLNETFTDPAIIKVLHGADSDVEWLQRDFGLYLVNVFDT 173
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R L L R+SL++LL +C V+ANK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 174 HQAARQLSLGRHSLDHLLKLYCNVDANKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYD 233
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L E L V++RS D+C + Y K + +ENSYL +Y Q LN QQ
Sbjct: 234 RVRTELWERGNELP---AQLQVVWQRSRDICLKKYLKPIFTENSYLELYRKQKKHLNTQQ 290
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ L WRD +AR +DESTGYVLPN L++I+++LP
Sbjct: 291 MTAFKLLFAWRDKMARQEDESTGYVLPNHMLLKISEELP 329
>gi|405972152|gb|EKC36938.1| Exosome component 10 [Crassostrea gigas]
Length = 826
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 164/258 (63%), Gaps = 16/258 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S T+DF++DTL LR + P L E+F P KV HGAD DI WLQRD G+Y+ NMFDT
Sbjct: 296 ISTATDDFLIDTLALRNDLSP-LNEIFTHPAVVKVFHGADSDIDWLQRDLGLYVVNMFDT 354
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL R SL +L+ H+C V +K+YQ ADWR+RPLP E+++YAREDTHYL YIY
Sbjct: 355 GQAARVLNHSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYAREDTHYLTYIYQ 414
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK +L + + +N L V +RS ++C ++Y+K++ E+SYL +Y N++Q
Sbjct: 415 RMKQELLARGNDQKNL---LLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSKKVFNSRQ 471
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL-----------RRLL 229
L + L +WRD +AR +DESTGYVLPN +++IA LP + R+ L
Sbjct: 472 LQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILPREQQGIFACCNPIPPLVRQFL 531
Query: 230 KSKHSYI-ERYMGPVLSI 246
HS+I E P+L +
Sbjct: 532 PEIHSFILEAREAPLLKV 549
>gi|440797552|gb|ELR18636.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 929
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 147/225 (65%), Gaps = 4/225 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL LR + L F D KV HG+D DI+WLQRDFG+Y+ NMFDT
Sbjct: 301 ISTRTEDFIVDTLALREHMH-LLSSSFHDANIVKVFHGSDSDIMWLQRDFGLYVINMFDT 359
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA RVL+ SL YLL H CGV A+K+YQ ADWR+RPLP+EML+YAREDTHYLL+IYD
Sbjct: 360 GQACRVLEYPSFSLAYLLRHHCGVLADKKYQLADWRIRPLPEEMLKYAREDTHYLLFIYD 419
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L S N + V RS ++C YEK L + S+L +Y N QQ
Sbjct: 420 KLRNELIGRANMSNNL---ILAVLNRSRELCLLQYEKPLWTPTSHLSLYNRFNYVFNEQQ 476
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ V A + +WRD +AR +DES YVLPN L IA+ +PT+ L
Sbjct: 477 MRVFAAVYKWRDTVAREEDESYRYVLPNHMLFHIAELVPTSVPAL 521
>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
Length = 885
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRMEDFIIDTLELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWD---RGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
Length = 673
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
Length = 860
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR + L E +P KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRMEDFIIDTLELRSDMY-ILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELWD---RGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LA L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LAAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
Length = 679
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
Length = 1092
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ED V+DTL LR VGP L +F DP KV+HGAD D+ WLQRDFG++L N+FDT
Sbjct: 291 LSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGADSDVAWLQRDFGLFLANLFDT 350
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL + + L +LL +CG A+K +Q ADWRVRPL EML YAR DTH+LLY YD
Sbjct: 351 GQAARVLGMRGHGLAHLLDFYCGFKADKRFQLADWRVRPLTPEMLHYARSDTHHLLYCYD 410
Query: 121 IMKIKLS----SMPKE--------------SENSDTPLTEVYKRSYDVCRQLYEKELLSE 162
+K L+ S+P+ + + L V +RS +C Y+KE S
Sbjct: 411 KLKAALAEAGDSVPEHLAVELPPAASTAAAAAGAGAALATVLERSRRLCLLQYDKERYSP 470
Query: 163 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
++L + A L +QL+V L EWRD +AR DESTGY+LP L+++A+ +P T
Sbjct: 471 LAFLDLASKLNASLTDEQLSVFGALYEWRDSVARQLDESTGYLLPRAQLLKLAQAMPRTV 530
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+L + L I R + VL+ I+ + Q EV+A + E+R +
Sbjct: 531 LELHKALGRSSPVISRQVAEVLAAIQAARQP----EVVA-AVGEQRQQ 573
>gi|339717671|pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717672|pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717673|pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717674|pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 153 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 211
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 212 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 271
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 272 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 328
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 329 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
Length = 956
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 161/255 (63%), Gaps = 3/255 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDF++DTL+LR + L F P KVMHG+D DI+WLQRDF IY N+FDT
Sbjct: 385 ISTRSEDFLIDTLELRQHMH-ILNSSFTHPKIVKVMHGSDCDILWLQRDFAIYCVNLFDT 443
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA R L L SL YLL H+CG++A+K+YQ ADWRVRPLP EM++YAREDTHYLLYIYD
Sbjct: 444 GQACRTLALPGCSLAYLLKHYCGIDADKKYQLADWRVRPLPSEMVKYAREDTHYLLYIYD 503
Query: 121 IMKIKL-SSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
++ + ++ P S S + EV RS ++C + YEKEL SE SYL + +
Sbjct: 504 RLRQDIFNTKPNTSTVSGFERMEEVLVRSKELCMRRYEKELFSETSYLSLIKFSRGCTAS 563
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
V+ L +WRD +AR DDES YVLP+ ++ IA++ PT ++L + R
Sbjct: 564 ISENVIRVLFKWRDTVARKDDESIRYVLPDHMILSIAQEAPTEVSQLLSCCNPVPKLVRR 623
Query: 239 YMGPVLSIIKNSMQN 253
++ +I ++Q+
Sbjct: 624 DAKIIVDLITKALQS 638
>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
Length = 518
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 155/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ D+VVDTL LR ++ L EVF +P KV+HGAD D++WLQRDFG+YL +FDT
Sbjct: 55 ISTRSSDYVVDTLALRHELH-LLNEVFANPKIIKVLHGADMDVLWLQRDFGLYLVGLFDT 113
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL + SL +LL H+C ++ +K++Q ADWR+RPLP EM++YAREDTHYLL++YD
Sbjct: 114 GQAARVLGMAHLSLAFLLRHYCHLDTDKKFQLADWRIRPLPLEMIKYAREDTHYLLHVYD 173
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ L + + N L V++RS VC + YEK L +E+SYL +Y N++Q
Sbjct: 174 LMRRDLLAKGNQLNNL---LHSVFQRSKQVCLKRYEKPLYTEDSYLELYRKSKKAFNSKQ 230
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + L WRD I+R +DESTGYVLPN +++I++ LP
Sbjct: 231 LYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILP 269
>gi|384247138|gb|EIE20625.1| hypothetical protein COCSUDRAFT_18228, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 150/231 (64%), Gaps = 2/231 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D++VD + LR +GP+L +F D KV+HG+D DIVWLQRDFGIY+ ++FDT
Sbjct: 108 VSTRTADYLVDVIALRSHIGPHLAPMFADTKIVKVLHGSDSDIVWLQRDFGIYVASLFDT 167
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL L YLL HFC V A+K +Q ADWRVRPL E L YAR DTHYLLYIYD
Sbjct: 168 GQAARVLAYPSAGLAYLLSHFCSVKADKRWQLADWRVRPLSAEALHYARLDTHYLLYIYD 227
Query: 121 IMKIKLSSMPKE--SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
+K+ + +E T + V +RS +C Q YEKEL SE SYL Y L
Sbjct: 228 CLKVLPDHLQEEVPERGPATCMGVVLERSRLLCLQRYEKELFSETSYLDAYRRCQEPLTR 287
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+QLAV AGL WRD AR DESTG+VL L+++AK+ P+ A LR +L
Sbjct: 288 EQLAVFAGLYAWRDRTARERDESTGFVLSRALLVKLAKRAPSNARDLRAVL 338
>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
Length = 1011
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 163/254 (64%), Gaps = 5/254 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL LR + L F +P KV+HG++ D+ WLQRDFGIY+ NMFDT
Sbjct: 317 VSTRTEDFIVDTLVLRSHMK-MLNVPFTNPKIVKVLHGSESDVKWLQRDFGIYIVNMFDT 375
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+ SL +LL +CGV+ANK++Q ADWR+RP+P+EM++YAREDTHYLLYIYD
Sbjct: 376 GQASRILEYPSASLAFLLRFYCGVDANKKFQLADWRIRPVPEEMIKYAREDTHYLLYIYD 435
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L K + N L EV +RS ++C YEK++L ENS+ G N Q
Sbjct: 436 RLRNELVLKGKSTNNY---LMEVLRRSKEICLIKYEKDILDENSHAEYLKKNGITYNPAQ 492
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L + L WR+ +AR DDES Y+LPN + I ++ PTT L YI++Y
Sbjct: 493 LKIFRLLYNWREKVARDDDESVRYILPNSMMQLIVEKQPTTITDLLACCTPIPPYIKQYG 552
Query: 241 GPVLS-IIKNSMQN 253
+L I+++ + N
Sbjct: 553 HELLQDILRSRISN 566
>gi|221121078|ref|XP_002157951.1| PREDICTED: exosome component 10-like [Hydra magnipapillata]
Length = 758
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 147/219 (67%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL LR ++ + E+F DP KVMHGAD DI WLQRDFG+Y+ NMFDT
Sbjct: 284 ISTRFEDFIIDTLALREEMYK-INEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMFDT 342
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R L +R SL YLL +C V+A K+YQ ADWR+RP+P EM+ YA+EDTHYLLY+YD
Sbjct: 343 GQAARTLHEDRFSLAYLLSKYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYVYD 402
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
I++ +L + ++N L VY +S +C +Y+K L + +SY+ Y LN QQ
Sbjct: 403 ILRNQLLNKGNANKNL---LKSVYSKSTSICATMYQKPLFNNDSYIATYEKYRGRLNPQQ 459
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L EWRD AR +DES Y LPN L +IA+ LP
Sbjct: 460 LECFRLLFEWRDKTAREEDESIVYTLPNHMLFQIAENLP 498
>gi|417405124|gb|JAA49287.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6 [Desmodus rotundus]
Length = 888
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 149/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFV+DTL+LR + L E P KV HGAD D+ WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFVIDTLELRSDMY-ILNESLTHPAIVKVFHGADSDVEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+ +L L R+SL++LL +C V +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAACLLNLGRHSLDHLLKLYCDVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLELW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFKLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
Length = 899
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 166/266 (62%), Gaps = 5/266 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 329 ISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+YD
Sbjct: 388 HHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYD 447
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ L T + +V+ +S D+ + Y K + +E+SY+ +Y Q N QQ
Sbjct: 448 RVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQ 504
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA + WRD +AR +DESTGY+LPN +++IA +LP + + + +
Sbjct: 505 LAAFRLMYAWRDKLAREEDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQI 564
Query: 241 GPVLSIIKNSMQN-AANFEVIAQKLK 265
+ +IK + + EV+AQK K
Sbjct: 565 NELHQLIKQARETPLLKAEVVAQKRK 590
>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020, partial [Trichoplax
adhaerens]
Length = 535
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 160/256 (62%), Gaps = 5/256 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL LR ++ L EVF DP K++HGAD DI+WLQRDF IY+ NMFDT
Sbjct: 282 ISTRDADYIVDTLALRSELWT-LNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDT 340
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R+L+ R SL YLL +C V ANK Q ADWR+RPLP EM++YAREDTHYLLYI+D
Sbjct: 341 GQAARLLQFPRFSLSYLLLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFD 400
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L + + S L + RS +C + YEK + ++ SYL++ N QQ
Sbjct: 401 VLTNELMN----ASTSVDLLKSNFDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNHQQ 456
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
A L WRD +AR +DES +VLPN L++IA+ LP + + + +Y+
Sbjct: 457 NYAFAKLYSWRDSVARDNDESANFVLPNHMLLQIAENLPREPQGILACCNPIPTLVRQYI 516
Query: 241 GPVLSIIKNSMQNAAN 256
G + IIK + + + N
Sbjct: 517 GDIHQIIKKARERSIN 532
>gi|339717675|pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
gi|339717676|pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 153 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 211
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML AR+DTHYLLYIYD
Sbjct: 212 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSAARDDTHYLLYIYD 271
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 272 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 328
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 329 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>gi|403344491|gb|EJY71591.1| hypothetical protein OXYTRI_07421 [Oxytricha trifallax]
Length = 967
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D+VVDTLKLR +GP L +F DP KV+HGAD D+ WLQ+DF +Y+ NMFDT
Sbjct: 327 ISNRTHDYVVDTLKLRQSLGPKLLPLFTDPQITKVLHGADYDVEWLQKDFSLYVVNMFDT 386
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R+L+ L +LL +CGV +K+YQ ADWR RP+P+EML+YAREDTHYLLY+YD
Sbjct: 387 GQAARILQKPGFGLAFLLQSYCGVLTDKKYQLADWRQRPIPEEMLKYAREDTHYLLYVYD 446
Query: 121 IMKIKLSSMPKESENSDTPLT---EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
+M+ +L + +N+ PL+ +V +S +C++ YEK ++ + +Y I G +
Sbjct: 447 LMRKELIQNAVK-QNASNPLSMYRQVLIKSNQLCQKQYEKPIVKDYNYYMIVGRNKTIQS 505
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 231
+Q++V+ L + RD IAR +DES+ Y +PN + ++ K LPTT +++ +S
Sbjct: 506 MKQISVLKMLVKLRDYIARLEDESSQYAIPNHIMFQMGKDLPTTRNQIKDCCRS 559
>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 550
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 148/221 (66%), Gaps = 8/221 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DP KV HGAD DI WLQRDFG+Y+ +FDT
Sbjct: 298 ISTREEDFIIDTLELRSEMY-ILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDT 356
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QASR L L R+SL++LL HFC V ++K YQ ADWR+RPLP+EM++YAR DTHYLLYIYD
Sbjct: 357 HQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLLYIYD 416
Query: 121 IMKIKLSSMPKESENSDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
++ +L N P L V+ RS D+ + Y K + +E SYL + Q N
Sbjct: 417 CVRAQLLDF-----NHGQPGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSFNT 471
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QQLA L WRD +AR +DESTGYVLP +I+I+++LP
Sbjct: 472 QQLAAFRLLFAWRDKLARQEDESTGYVLPTHMMIKISEELP 512
>gi|405969148|gb|EKC34144.1| Exosome component 10, partial [Crassostrea gigas]
Length = 309
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S T+DF++DTL LR + P L E+F P KV HGAD DI WLQRD G+Y+ NMFDT
Sbjct: 54 ISTATDDFLIDTLALRNDLSP-LNEIFTHPAVVKVFHGADSDIDWLQRDLGLYVVNMFDT 112
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL R SL +L+ H+C V +K+YQ ADWR+RPLP E+++YAREDTHYL YIY
Sbjct: 113 GQAARVLNHSRFSLAHLMEHYCDVITDKQYQLADWRIRPLPAELMKYAREDTHYLTYIYQ 172
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK +L + + +N L V +RS ++C ++Y+K++ E+SYL +Y N++Q
Sbjct: 173 RMKQELLARGNDQKNL---LLSVLQRSTEICAKVYKKQVFKEDSYLELYRKSKKVFNSRQ 229
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + L +WRD +AR +DESTGYVLPN +++IA LP
Sbjct: 230 LQALQKLYQWRDKLARQEDESTGYVLPNHMILQIADILP 268
>gi|410899603|ref|XP_003963286.1| PREDICTED: exosome component 10-like [Takifugu rubripes]
Length = 885
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 146/219 (66%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL++R ++ L E F DP KV HGAD DI WLQRDFG+Y+ +FDT
Sbjct: 328 ISTREEDFIIDTLEVRSEMY-ILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDT 386
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QASR L L R+SL++LL HFC V ++K YQ ADWR+RPLP+EM++YAR DTHYLLYIYD
Sbjct: 387 HQASRALNLARHSLDHLLTHFCNVASDKRYQLADWRIRPLPEEMVQYARSDTHYLLYIYD 446
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L + L V+ RS D+ + Y K + +E SYL + Q N QQ
Sbjct: 447 RVRAQLLDF---NHGQAGLLKSVWDRSRDISLKKYMKPIFTEESYLELQRKQKKSFNTQQ 503
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LA L WRD +AR +DESTGY LP +I+I+++LP
Sbjct: 504 LAAFRLLFAWRDKLARQEDESTGYALPTHMMIKISEELP 542
>gi|427793373|gb|JAA62138.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6, partial [Rhipicephalus pulchellus]
Length = 911
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 147/219 (67%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VDTL LR ++ L EVF DP KV HGAD D++WLQRDFG+YL +FDT
Sbjct: 316 ISSRTQDYIVDTLALRHELQ-MLNEVFADPKILKVFHGADMDVLWLQRDFGLYLVGLFDT 374
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA++VL L SL +LL H+C + A+K++Q ADWR+RPLP EM+ YA+ DTHYLLYI D
Sbjct: 375 GQAAKVLGLAHFSLAFLLKHYCQIEADKQFQLADWRIRPLPPEMVSYAQSDTHYLLYIMD 434
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK L+ E++N L V+ RS V + YEK E SY+ +Y N++Q
Sbjct: 435 CMKRDLADRSNENDNL---LRSVFDRSKQVALRCYEKPSYHEQSYMELYRKSRKTFNSRQ 491
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + L WRD AR +DESTGYVLPN ++EI++ LP
Sbjct: 492 LHALRHLYSWRDRTARNEDESTGYVLPNHMILEISEILP 530
>gi|346467363|gb|AEO33526.1| hypothetical protein [Amblyomma maculatum]
Length = 656
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 146/219 (66%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ D+VVDTLKLR ++ L EVF +P KV+HGAD D++WLQRDFG+YL +FDT
Sbjct: 80 ISTRSHDYVVDTLKLRHELQ-VLNEVFANPKIIKVLHGADMDVLWLQRDFGLYLVGLFDT 138
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL L SL +LL H+C V A+K++Q ADWR+RPLP M+ YAR DTHYLLYI D
Sbjct: 139 GQAARVLGLAHFSLAFLLRHYCRVEADKQFQLADWRIRPLPAVMIHYARSDTHYLLYIMD 198
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+K S + S +D L V+ RS V + YEK +E SYL +Y N +Q
Sbjct: 199 CLK---SDLADRSNKNDNLLRSVFDRSKQVALKRYEKPSYNEQSYLELYRKSRKTFNTRQ 255
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + L WRD IAR +DESTGYVLP ++EI++ LP
Sbjct: 256 LHALRHLYAWRDHIARVEDESTGYVLPKHMILEISEILP 294
>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
Length = 885
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 147/220 (66%), Gaps = 6/220 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+D G+Y+ NMFDT
Sbjct: 330 ISTRDEDFIIDTLELRSELY-ILNEAFTDPAIVKVFHGADSDIEWLQKDLGLYIVNMFDT 388
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QASR L L R+SL++LL FC V+++K YQ ADWR+RPLPDEM +YAR DTHYLLY+YD
Sbjct: 389 HQASRTLNLGRHSLDHLLKLFCNVDSDKRYQLADWRIRPLPDEMFQYARADTHYLLYVYD 448
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+++ L E N L + V+ +S D+ + Y K L +++SY+ + Q N Q
Sbjct: 449 RLRVDLW----EVGNGQPALLQMVWHKSKDISLKKYMKPLFTDDSYMDLLRKQKKVFNTQ 504
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QL L WRD +AR +DESTGYVLPN +I+I+ LP
Sbjct: 505 QLTAFRLLYGWRDKLARQEDESTGYVLPNHMMIKISDILP 544
>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
Length = 1045
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 150/228 (65%), Gaps = 4/228 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL LR + L V +P KV+HG+D DI WLQRDFGIY+ NMFDT
Sbjct: 294 ISTRGEDFIIDTLALRSHIH-MLNNVTTNPAIVKVLHGSDSDIKWLQRDFGIYIVNMFDT 352
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL+ SL +LL +FC V+ANK+YQ ADWR+R +P+EM++YAREDTHYLLYIYD
Sbjct: 353 GQASRVLEYPSASLAFLLKYFCAVDANKKYQLADWRIRKIPEEMIKYAREDTHYLLYIYD 412
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L + K S N L EV +RS ++ YEKE+L +N+++ N Q
Sbjct: 413 RLRNELINKGKGSNNL---LLEVLRRSRELALLKYEKEILDDNTHIQFAKKLNLQYNPVQ 469
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
L V+ + WR+ +AR +DES YVLPN+ + I + P T +L L
Sbjct: 470 LNVLKVIYHWREGLAREEDESVRYVLPNQMMFSIIENQPVTVQELIAL 517
>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
intestinalis]
Length = 647
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 153/227 (67%), Gaps = 11/227 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VDT+ LR ++ L +VF +P KV HGAD DI+WLQRDFGIY+ N+FDT
Sbjct: 107 LSTRTKDYIVDTIALRAELN-ILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDT 165
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R L L+R+SL+YLL H+C V A+K+YQ ADWR+RPLP EML YA+ DTHYLLY+YD
Sbjct: 166 GQAARALGLQRHSLDYLLTHYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYD 225
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---YGLQGA--G 175
+M++ L L +V +S D+C YEK + ++ S+L + + +G
Sbjct: 226 MMRLDLVKT-----GDPGLLHKVIDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGKKD 280
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
QQ+ + + WRD +AR +DES GYVLPN L++IA+ LP A
Sbjct: 281 FRPQQIEALRLIFAWRDGLARQEDESCGYVLPNHMLLQIAEILPREA 327
>gi|345478840|ref|XP_001599044.2| PREDICTED: exosome component 10 [Nasonia vitripennis]
Length = 1163
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 145/219 (66%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD G+Y+ NMFDT
Sbjct: 679 ISTKDTDYLIDTLTLRSELH-VLNEIFTKPSILKVFHGADSDILWLQRDLGLYIVNMFDT 737
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA++ L L SL YLL C ++ANK +Q ADWR+RPLP+E+++YAREDTHYLLYI D
Sbjct: 738 YQAAKQLGLPFLSLSYLLKTHCEISANKHFQLADWRIRPLPEELMKYAREDTHYLLYIKD 797
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
I+ +++ + L VY RS D+C+Q Y K + +ENSY +Y N +Q
Sbjct: 798 ILS---NALIDSANGQSNILKAVYTRSTDICKQTYTKPVWTENSYKAMYRKSQKMFNNRQ 854
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + L +WRD ARA+D+ST YVLPN L+ IA+ LP
Sbjct: 855 LFALQELHKWRDETARAEDDSTNYVLPNHMLLNIAETLP 893
>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
laibachii Nc14]
Length = 770
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 174/284 (61%), Gaps = 25/284 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S DF+VDTL LR + L +VF DP K KV+HGAD DI+WLQRD G+Y+ NMFDT
Sbjct: 265 ISTHNHDFLVDTLALRSSLQ-LLNQVFCDPQKLKVLHGADMDILWLQRDLGLYVVNMFDT 323
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A+RVL+L R SL YLL C + A+K+YQ ADWR RPL +EM RYAREDT YLL+IY
Sbjct: 324 GRAARVLQLPRFSLAYLLKKCCDIEADKQYQLADWRQRPLTEEMTRYAREDTRYLLFIYR 383
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--SYLHIYGLQGAGLNA 178
MK +L + K N+ + EV+K S +C Q+Y K +SE+ + L AG+ A
Sbjct: 384 KMKEEL--LLKSDSNAANLVREVHKHSNQLCLQVYSKPQVSEDDCTALVTKLTASAGVTA 441
Query: 179 ---QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 235
Q V L WRD +AR DES+ YVLPN+ L++IA+ LP+ + +L RL
Sbjct: 442 FSELQQRVFRRLYFWRDAVARETDESSMYVLPNQLLLQIARHLPSKSEQLLRL------- 494
Query: 236 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVL 279
R + P L +Q A FE++ L E+ ME SEET+ +
Sbjct: 495 --RNVIPPL------VQKHA-FEIVQLILTEKEME-QSEETKAV 528
>gi|347967581|ref|XP_003436085.1| AGAP002300-PB [Anopheles gambiae str. PEST]
gi|333468394|gb|EGK96928.1| AGAP002300-PB [Anopheles gambiae str. PEST]
Length = 988
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 147/219 (67%), Gaps = 7/219 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VD L LR ++ L EVF DP K KV+HG+ DI WLQRD G+YL NMFDT
Sbjct: 309 LSTRTKDYIVDALALRDELH-VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDT 367
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A+RVL+ R L++LL H+C ++ +K +Q ADWR+RP+P+ + YAR+DTHYLLYIYD
Sbjct: 368 GEAARVLQFSRIGLQFLLKHYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYD 427
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ +L E ++ L VY +S +C+Q Y+K ++E++ ++IY + +Q
Sbjct: 428 RMRNEL------LEKGESLLQTVYDKSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQ 481
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + WRD IAR +DES GYVLP ++IA +LP
Sbjct: 482 MYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLP 520
>gi|347967577|ref|XP_312669.5| AGAP002300-PA [Anopheles gambiae str. PEST]
gi|333468393|gb|EAA07463.5| AGAP002300-PA [Anopheles gambiae str. PEST]
Length = 992
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 147/219 (67%), Gaps = 7/219 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VD L LR ++ L EVF DP K KV+HG+ DI WLQRD G+YL NMFDT
Sbjct: 313 LSTRTKDYIVDALALRDELH-VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDT 371
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A+RVL+ R L++LL H+C ++ +K +Q ADWR+RP+P+ + YAR+DTHYLLYIYD
Sbjct: 372 GEAARVLQFSRIGLQFLLKHYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYD 431
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ +L E ++ L VY +S +C+Q Y+K ++E++ ++IY + +Q
Sbjct: 432 RMRNEL------LEKGESLLQTVYDKSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQ 485
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + WRD IAR +DES GYVLP ++IA +LP
Sbjct: 486 MYAFREVLYWRDQIARLEDESPGYVLPQHMALDIASKLP 524
>gi|340380967|ref|XP_003388993.1| PREDICTED: exosome component 10-like [Amphimedon queenslandica]
Length = 724
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 148/220 (67%), Gaps = 5/220 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D+++DTL LR + L EVF +P KVMHGAD DI WLQRDFG+Y+ N+FDT
Sbjct: 274 VSTRTTDYIIDTLSLRPHLH-LLNEVFTNPNIIKVMHGADWDIPWLQRDFGVYIVNLFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA R L L R SL +LL + CGV ANK+YQ ADWR+RPLP++M++YAREDTHYLLY+YD
Sbjct: 333 GQACRTLGLPRYSLAFLLSYCCGVTANKQYQLADWRIRPLPEDMIKYAREDTHYLLYVYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY-GLQGAGLNAQ 179
++ + + + S + + V K S ++ ++Y+K +++ SYL + L+ +
Sbjct: 393 RLR---NELIRRSNSQSNLINAVLKNSKEISLKVYKKPAINDESYLKLCKKFNKRNLSHK 449
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QL + L +WR +AR +DES GYVLPN L ++ + LP
Sbjct: 450 QLYALKCLYQWRFNVARREDESPGYVLPNHMLFQLCEILP 489
>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
Length = 1195
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 159/244 (65%), Gaps = 17/244 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDF++DTL LR + L +VF +P+ KV+HG+D DI WLQRDFG+Y+ NMFDT
Sbjct: 289 ISTRSEDFLIDTLLLRSHIH-MLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDT 347
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASR+L+ SL +LL +C ++ANK+YQ ADWR+R LP+EM++YAREDTHYLLYIYD
Sbjct: 348 GQASRILEYPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYD 407
Query: 121 IMKIKLSSMPKES----------------ENSDTPLTEVYKRSYDVCRQLYEKELLSENS 164
++ +L S ++ + ++ L EV +RS ++ YEK++L +NS
Sbjct: 408 RLRNELISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDNS 467
Query: 165 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 224
+++ + QL V+ L WR+ +AR +DES Y+LPN+ ++ I ++ PT+ +
Sbjct: 468 HINFAKKLNLQYSPTQLNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQE 527
Query: 225 LRRL 228
L L
Sbjct: 528 LLTL 531
>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
Length = 739
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/268 (41%), Positives = 164/268 (61%), Gaps = 7/268 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+++DTL LR ++ L E+F +P KV HGAD DI WLQRD G+Y+ NMFDT
Sbjct: 252 ISTRNADYIIDTLYLRDKLH-VLNEIFTNPAVVKVFHGADSDIPWLQRDLGLYVVNMFDT 310
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+++L R LE+LL H+C V+A+K +Q DWR RPL E + YAR DTHYLLY+YD
Sbjct: 311 YQAAKILNFSRKGLEFLLKHYCNVDADKTFQLYDWRTRPLSTEAIFYARCDTHYLLYVYD 370
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++K L +M S N + V++RS DVC+ YE +L ++S+L +Y + QQ
Sbjct: 371 MIKKDLMAM---STNQCNYIELVFQRSADVCKSRYEVNILRDDSHLSMYKRSKKMFDIQQ 427
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ + L WRD +AR DES GY+LPN L++I++ LP + + + + +
Sbjct: 428 MYALKHLYAWRDKLARELDESPGYILPNHMLLKISEMLPKESFGILACCSPVPPLVRQCL 487
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEER 268
+ I+KN+ + FE A+KL E++
Sbjct: 488 HEIHYIVKNAKEQT--FEN-AEKLNEDK 512
>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
Length = 701
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 149/252 (59%), Gaps = 8/252 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +DFVVD L LR V L + F DP KVMHGAD D+ WLQ+DFGI++ +FDT
Sbjct: 162 VSTREKDFVVDVLALRSLVRDALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLFDT 221
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL+L +L YLL H+CG+ ANK++Q ADWRVRPL EML YAR DTHYLLY+YD
Sbjct: 222 GQAARVLELPSKALAYLLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYVYD 281
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH--IYGLQGAGLNA 178
+K L++ ENS + +S DVC + Y E SY + LN
Sbjct: 282 ELKKALAA---RGENS---IAATLTQSRDVCLKKYLPPTFDEGSYYEDLLKTNNLTNLND 335
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
QLAV A L +WRD AR DES GYV+P ++ +A P+T L + + I +
Sbjct: 336 PQLAVYAALFKWRDAAAREADESLGYVMPRELMLRLAIAAPSTKRALMEECRGQVPLIAK 395
Query: 239 YMGPVLSIIKNS 250
+ V +I +
Sbjct: 396 HAETVADLISRA 407
>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
Length = 1189
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 144/219 (65%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+++DTL LR ++ L E+F PT K+ HGAD DI+WLQRD +Y+ NMFDT
Sbjct: 276 ISTVNTDYLIDTLALRSELHQ-LNEIFTKPTILKIFHGADMDILWLQRDLSLYVVNMFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA++ L L SL YLL+ +CG+N NK +Q ADWR+RPLP+E+++YAREDTHYLL+I D
Sbjct: 335 HQAAKQLNLPYLSLAYLLNKYCGINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHIKD 394
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++K +L N L VY R D+C++ Y K + +E S +++Y N +Q
Sbjct: 395 MLKNELIETANGKSNI---LKAVYDRCTDLCKRTYVKSIWTEESCMNMYRKSQKSFNNKQ 451
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + L +WRD+ AR +D+S GYVLPN L+ IA+ LP
Sbjct: 452 MYALLELHKWRDITAREEDDSIGYVLPNHMLLNIAETLP 490
>gi|383849711|ref|XP_003700481.1| PREDICTED: exosome component 10-like [Megachile rotundata]
Length = 1271
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 140/213 (65%), Gaps = 4/213 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMFDT QA++
Sbjct: 311 DYLIDTLSLRSELHE-LNEIFTKPTILKVFHGADLDIQWLQRDLSLYIVNMFDTHQAAKQ 369
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L L SL YLL H+C ++ NK +Q ADWR+RPLP+E+ +YAREDTHYLLYI DI++
Sbjct: 370 LNLPYLSLAYLLKHYCNIDPNKHFQLADWRIRPLPEELQKYAREDTHYLLYIKDILR--- 426
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+++ + L VY RS D+C++ Y K + +E S + IY N +QL +
Sbjct: 427 NALIDAANGQINILKSVYDRSTDICKKTYVKPIWTEESCMSIYRKSQKMFNNKQLYALIE 486
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L +WRDV AR +D+ST YVLPN L+ IA+ LP
Sbjct: 487 LHKWRDVTAREEDDSTAYVLPNHMLLNIAETLP 519
>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
Length = 526
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 146/219 (66%), Gaps = 6/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL LR ++ L EVF DP K KV+HGA DI WLQRD G+YL NMFDT
Sbjct: 252 LSTRKKDYIVDTLALRDELH-VLNEVFTDPRKLKVLHGAISDIEWLQRDLGLYLVNMFDT 310
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A+RVL+ R L++LL H+C + +K YQ ADWR+RPLP + YAR+DTHYLLYIYD
Sbjct: 311 GEAARVLQFSRIGLQFLLKHYCNIETDKAYQLADWRMRPLPPAFIEYARKDTHYLLYIYD 370
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ L + D+ L VY +S +C+Q Y+K +++E+S ++IY + +Q
Sbjct: 371 RIRNDLL-----EKGGDSLLQTVYDKSTFLCKQRYQKPIVNEDSIMNIYRRSRYVFDHRQ 425
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + + WRD IAR +DES GYVLP ++IA +LP
Sbjct: 426 MYALREILYWRDKIARQEDESPGYVLPQHMALDIASKLP 464
>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
Length = 669
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 151/230 (65%), Gaps = 11/230 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL LR + L +VF +P KV HGAD+DI WLQRDFG+Y+ N+FDT
Sbjct: 160 LSTRKTDYIVDTLALRANLN-ILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDT 218
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL+L S EYLL H+C V ++K+YQ ADWR RPL +ML+YA+EDTHYLLYIYD
Sbjct: 219 GQAARVLELGL-SREYLLKHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYD 277
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----L 176
+MK+ L E + +V S D+C YEK ++ + S+L + +GAG
Sbjct: 278 MMKLDLL----EKAGGVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLR-KGAGKIEDW 332
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
Q+L + + WRD +AR DES GY++PN+ L++IAK LP T +R
Sbjct: 333 EPQELEALRLIYMWRDELARQKDESCGYIMPNKMLVQIAKTLPQTVQDVR 382
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 10/174 (5%)
Query: 57 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 116
+FDTGQA+R LKL SLEYLL H+C V ++K++Q ADWR RPL +ML+YA++DTHYLL
Sbjct: 430 LFDTGQAARELKLG-CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYLL 488
Query: 117 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG- 175
YIYD+MK+ L E + +V S D+C YEK ++ + S+ + +GAG
Sbjct: 489 YIYDMMKLDLL----EKAGDAKLMRKVIGNSRDICLLKYEKLIIDDTSHRKLLR-KGAGK 543
Query: 176 ---LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
Q+L + + WRD +AR DES GYVLPN+ L++IAK +P T LR
Sbjct: 544 IEDWEPQELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDLR 597
>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
Length = 834
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 143/219 (65%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + D+++DTL+L Q+ P L EVF +P K+ HGAD DI WLQRDFGIY+ N+FDT
Sbjct: 276 ISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHGADMDIQWLQRDFGIYVVNLFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+++L + SL +LL H+C V A+K+YQ ADWR+RPLP++M+ YAREDTHYL YIY+
Sbjct: 335 YHAAKLLGFAQLSLSFLLRHYCQVIADKQYQLADWRIRPLPEQMVNYAREDTHYLGYIYE 394
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK L K D LT V++ S VC + Y ++ S+L +Y L N +Q
Sbjct: 395 KMKKDL----KMKGTGDNLLTAVWQNSRLVCLKRYRIPPITAESHLELYRLSKKIFNERQ 450
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + L WRD IAR +DESTG+VLP L++IA LP
Sbjct: 451 LFALKELFAWRDRIAREEDESTGFVLPKHMLLQIADVLP 489
>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 138/203 (67%), Gaps = 4/203 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTG 203
L L WRD AR +DES G
Sbjct: 507 LTAFQLLFAWRDKTARREDESYG 529
>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
Length = 837
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ED+++DTL LR + L +F DP KV+HGAD DI+WLQRD +Y+ NMFDT
Sbjct: 309 LSTRSEDYLIDTLALRDDL-KLLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNMFDT 367
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL R+SL +LL H+C A+K+YQ ADWRVRPL +EML YAR DTH+LLYIYD
Sbjct: 368 GQATRVLNFPRHSLAWLLQHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYD 427
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ +L + E N L VY+RS ++C Q YEK S+ + L
Sbjct: 428 RLHSELLAQGNEQANL---LRAVYQRSKELCLQRYEKPFYSQATAEDALNRMSRSLVPSA 484
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ + L WRD +AR +DES YVLP+ L+E+A + PT ++
Sbjct: 485 VELFMALHAWRDQVARDEDESPRYVLPDHMLLELASRAPTETGQI 529
>gi|443695610|gb|ELT96477.1| hypothetical protein CAPTEDRAFT_99256, partial [Capitella teleta]
Length = 627
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 141/223 (63%), Gaps = 4/223 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT DF+VD L LR + L VF DP KV HGA++DI WLQRD G+Y+ NMFDT
Sbjct: 275 ISTRTHDFLVDALALREHLH-LLNNVFTDPGIVKVFHGAEQDIHWLQRDLGVYVVNMFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L L R SL +LL +C V +K++Q ADWR+RPLP++++ YAREDTHYLLY++D
Sbjct: 334 FHAAKALGLPRLSLAHLLTTYCSVKPDKKFQMADWRIRPLPEQLVHYAREDTHYLLYVHD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++K +L E+ N L V S VC+ Y K +LS +S+L I N+QQ
Sbjct: 394 LLKNQLLDAGNEAANL---LCSVLDSSTGVCKARYVKPILSSDSHLVIMKKARKWFNSQQ 450
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+ + + WRD R DDESTGYVLPN ++ IA+ LP A
Sbjct: 451 MQALKEMYAWRDGCGRVDDESTGYVLPNHMMLNIAENLPKEPA 493
>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
gi|108873835|gb|EAT38060.1| AAEL010007-PA [Aedes aegypti]
Length = 949
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 159/261 (60%), Gaps = 7/261 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R++D+++DTL LR ++ L EVF +P KV+HGA DI WLQRD +Y+ NMFDT
Sbjct: 314 ISTRSKDYIIDTLALREELH-ILNEVFTNPKVVKVLHGAISDIEWLQRDLSLYIVNMFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A++VL+ R L++LL H+C ++ +K YQ ADWR+RP+P + YAR+DTHYLLYIYD
Sbjct: 373 GEAAKVLEFSRIGLQFLLKHYCNIDTDKAYQLADWRIRPIPHNFIEYARKDTHYLLYIYD 432
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ +L + + L VY +S +C+Q Y K +++E++ ++IY + +Q
Sbjct: 433 RMRNELIA------KGASFLPTVYNKSTYMCKQRYVKPVINEDAVMNIYRRSKHVFDQRQ 486
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ + WRD +AR +DES GYVLP ++IA +LP + S + +++
Sbjct: 487 MYAFREILYWRDKLARQEDESPGYVLPQHMALDIASKLPREMQGIIACCTPVPSLVRQHL 546
Query: 241 GPVLSIIKNSMQNAANFEVIA 261
+ II + + + N V A
Sbjct: 547 HTIHQIILKAREISLNKSVAA 567
>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
Length = 885
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 141/213 (66%), Gaps = 4/213 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD +Y+ NMFDT QA++
Sbjct: 313 DYLIDTLSLRSELYQ-LNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAAKQ 371
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L L SL YLL+ +CG++ NK +Q ADWR+RPLP E+++YAREDTHYLLY+ D++K +L
Sbjct: 372 LNLPYLSLAYLLNKYCGIDPNKHFQLADWRIRPLPLELMKYAREDTHYLLYVKDMLKNEL 431
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
N L VY +S ++C++ Y K + +E S +++Y N +Q+ +
Sbjct: 432 IDAANGKSNI---LKAVYDQSTEICKRTYVKPIWTEESCMNMYRKSQKSFNNKQIYALLE 488
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L WRD+ AR +D+S GY+LPN L+ IA+ LP
Sbjct: 489 LHRWRDLTARQEDDSIGYILPNHMLLNIAETLP 521
>gi|384501951|gb|EIE92442.1| hypothetical protein RO3G_16964 [Rhizopus delemar RA 99-880]
Length = 599
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 145/229 (63%), Gaps = 10/229 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +DF++DTL+LR ++ L E F DPT KV+HGAD D++WLQRDFG+YL N+FDT
Sbjct: 273 LSTRNQDFIIDTLELRDKLWR-LNEYFADPTIVKVLHGADSDVIWLQRDFGLYLVNLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
++VL+ + L YLL +C +A+K+YQ ADWR+RPLP EML YAR DTH+LLYIYD
Sbjct: 332 YFPTKVLEFPHHGLAYLLKRYCNYDADKKYQLADWRIRPLPQEMLMYARADTHFLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA------ 174
++ +L S N + +RS +V Q Y+K++ L +G +
Sbjct: 392 CLRNELLSASSHGANL---MQNCLQRSNEVALQKYDKDIYDAQGGLGPFGWKNMLSKWKY 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+NAQQLAV + WRD AR +DES YVLPN L + +++PT ++
Sbjct: 449 SMNAQQLAVFKAIHAWRDHTARDEDESVRYVLPNHMLFALVERMPTESS 497
>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
Length = 796
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 141/219 (64%), Gaps = 7/219 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D+++DTL LR ++ L EVF D KV+HG+ DI WLQRD +Y+ NMFDT
Sbjct: 304 ISTRTKDYIIDTLALREELH-VLNEVFTDTKVVKVLHGSISDIEWLQRDLALYVVNMFDT 362
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A++VL+ R L++LL H+C + +K YQ ADWR+RP+P + YAR+DTHYLLYIYD
Sbjct: 363 GEAAKVLEFSRIGLQFLLKHYCNIETDKAYQLADWRIRPIPKNFIEYARKDTHYLLYIYD 422
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+ +L E + L VY +S +C+ YEK +++E+S ++IY + +Q
Sbjct: 423 RMRNEL------IEKGASFLQTVYNKSTFLCKHRYEKPVINEDSIMNIYHRSKHVFDQRQ 476
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + WRD AR +DES GYVLP ++IA +LP
Sbjct: 477 MYAFREILYWRDKTARLEDESAGYVLPQHMALDIASKLP 515
>gi|390345989|ref|XP_001198503.2| PREDICTED: exosome component 10 [Strongylocentrotus purpuratus]
Length = 752
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+VVDTL+LR ++ L + F DP KV HGA+ DI WLQRD G+Y+ NMFDT
Sbjct: 307 ISTAEHDYVVDTLELRSELQ-MLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDT 365
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QASR L +SL LL +C V A+K+YQ ADWR+RPLP+EML YAREDTHYLLYIY
Sbjct: 366 HQASRSLGFPHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYH 425
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK +L + N L V +S +C Q Y K + + +S++ + N +Q
Sbjct: 426 TMKNELIKRGNDRRNL---LRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ L WRD +AR +DESTGY+LP L +IA+ LP
Sbjct: 483 MHAFKKLFAWRDSLARQEDESTGYILPMHMLFQIAEILP 521
>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
Length = 332
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 8/257 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R DFVVD L+LR + L V DP KV HGAD D+ WLQRDFGIY+ MFDT
Sbjct: 78 VSTRRMDFVVDALELRGLIRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDT 137
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL+L L YLL H+C V A+K +Q ADWRVRPL +EM+ YAR DTH+LLY+YD
Sbjct: 138 GQAARVLELPSKGLAYLLDHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYD 197
Query: 121 IMKIKLSSMPKESENSDTPLTEVYK----RSYDVCRQLYEKELLSENSYLHIY--GLQGA 174
++ +L ++ + + P ++ + RS DVC LYEK + +Y Y
Sbjct: 198 RLRQQLDAVGR--GDGSKPFRDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAG 255
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+ +LAV A L WRD RA+DES GYV+P ++ +A++ PT L + +
Sbjct: 256 DLDLPRLAVYAALHGWRDERCRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGDSP 315
Query: 235 YIERYMGPVLSIIKNSM 251
+ ++ G ++ II ++
Sbjct: 316 LVAKHSGELVDIISRAL 332
>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
Length = 1465
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 174/284 (61%), Gaps = 27/284 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDTL LR ++ L +VF DP K KV+HG+D DI+WLQRD G+Y+ N+FDT
Sbjct: 289 ISTAQEDFLVDTLALRGKLQT-LNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDT 347
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A+R+L+ R SL Y+L C ++A+K+YQ ADWR RPL M++YAREDT YLL+IYD
Sbjct: 348 GRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYD 407
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI-YGLQGA----G 175
+K +L + +++ ++ L + + S +C Q+YEK +E L + L+G
Sbjct: 408 RLKKEL--LQAGAKSRESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYLRD 465
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 235
L+A Q V+ L WRD +AR +DES YV+PN L+++ K LP + L R+
Sbjct: 466 LSALQKRVIVALYLWRDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCH----- 520
Query: 236 IERYMGPV-LSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV 278
PV L I K+++Q I + + E+ ++A+EET+
Sbjct: 521 ------PVPLLIRKHALQ-------ITKMIVAEKTKLAAEETKT 551
>gi|357607504|gb|EHJ65543.1| PM-Scl autoantigen-like protein [Danaus plexippus]
Length = 787
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 138/213 (64%), Gaps = 5/213 (2%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
DF++DTL +R V L F DP K KV HGA+RDIVWLQRDFG+Y+ M DT QA+R
Sbjct: 273 DFIIDTLAVREHVHK-LNLAFTDPKKLKVFHGAERDIVWLQRDFGVYVVGMIDTHQAARA 331
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L L SL+ LL +C V+A+K YQ ADWR+RPLPDE+ +YAR DTHYLLY++ MK L
Sbjct: 332 LALPGLSLKSLLMRYCRVDADKRYQLADWRIRPLPDELRQYARVDTHYLLYMWRRMKADL 391
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
++ + + L V++ S +C Y KE+++E+S+L +Y N +Q+A +
Sbjct: 392 LAISSDG----SLLRSVFENSRHICSLTYNKEVINESSHLKLYVRSKKSFNTRQMAALRL 447
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L WRD AR DEST Y+LPN L+ +A+ LP
Sbjct: 448 LYRWRDANARELDESTTYLLPNHMLLALAETLP 480
>gi|390368374|ref|XP_003731440.1| PREDICTED: exosome component 10-like, partial [Strongylocentrotus
purpuratus]
Length = 776
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+VVDTL+LR ++ L + F DP KV HGA+ D WLQRD G+Y+ NMFDT
Sbjct: 161 ISTAEHDYVVDTLELRSELQ-MLNDAFTDPKIVKVFHGANMDFDWLQRDLGLYVVNMFDT 219
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QASR L +SL LL +C V A+K+YQ ADWR+RPLP+EML YAREDTHYLLYIY
Sbjct: 220 HQASRSLGFPHHSLASLLSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYH 279
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
MK +L + N L V +S +C Q Y K + + +S++ + N +Q
Sbjct: 280 TMKNELIKRGNDRRNL---LRAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQ 336
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ L WRD +AR +DESTGY+LP L +IA+ LP
Sbjct: 337 MHAFKKLFAWRDSLARQEDESTGYILPMHMLFQIAEILP 375
>gi|452823689|gb|EME30697.1| exosome complex exonuclease RRP6 [Galdieria sulphuraria]
Length = 736
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 182/320 (56%), Gaps = 25/320 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
S R EDFVVD ++LR + L ++ ++ KV+HGAD D+ WLQRDFG+Y+ +MFDT
Sbjct: 264 FSTRQEDFVVDAIELRGHLK-MLSKILENGNILKVLHGADSDVQWLQRDFGLYIVHMFDT 322
Query: 61 GQASRVLKLERNSLEYLLHHFCGVN---ANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
GQASR LK SL YLL +C ++ K YQ ADWR+RPLP++M YAR+DTHYLLY
Sbjct: 323 GQASRQLKFPFLSLSYLLKRYCNIDNSKTKKYYQLADWRIRPLPEDMFSYARQDTHYLLY 382
Query: 118 IYDIMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
IYD +L ++S N + LT Y+ S V +YEK ++ Y I +
Sbjct: 383 IYD----RLCEELRQSSNCNNNLLTCAYRASIQVSMLIYEKPQMNPLEYQSILSRRKLHF 438
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR--------L 228
+ +Q + LC WRD IAR +DES YVLP + +IEIAK++P + ++LR L
Sbjct: 439 DEKQTLALRTLCRWRDEIARIEDESLVYVLPEKCMIEIAKRIPQSESELRGCCPYSIPPL 498
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLK 288
LK+ + + + + SI++ S N + E+ + E AS + ++ SNL
Sbjct: 499 LKTYENEVLKLLQE--SIMEESEWNKSEQEITMCCTNGQMEEYASTPSHIVGF--QSNL- 553
Query: 289 IPNVGRESVDGVDALVGTTM 308
+P + SV +L G+T+
Sbjct: 554 VPPI---SVSSNSSLFGSTL 570
>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
Length = 804
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 136/213 (63%), Gaps = 4/213 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMFDT QA++
Sbjct: 223 DYLIDTLILRSELHQ-LNEIFTKPTILKVFHGADFDIQWLQRDLSLYVVNMFDTHQAAKQ 281
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L SL +LL +C +N NK +Q ADWR+RPLP+E+++YAREDTHYLL+I D++K +L
Sbjct: 282 LNFPYLSLAFLLKKYCNINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNEL 341
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+ N L VY S D+C++ Y K + +E S ++ Y N +QL
Sbjct: 342 IELANGQSNI---LKAVYDMSTDICKRTYVKPIWTEESCMNTYRKSQKMFNNKQLYAFKE 398
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L +WRD+ AR +D+S YVLPN L+ IA+ LP
Sbjct: 399 LHKWRDLTAREEDDSINYVLPNHMLLNIAETLP 431
>gi|424513045|emb|CCO66629.1| exosome component 10 [Bathycoccus prasinos]
Length = 911
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 161/281 (57%), Gaps = 31/281 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +DFVVD L+LR +GP L F++ K KV HGA+ D++WLQRDFGIY+ NMFDT
Sbjct: 278 ISTREQDFVVDALRLRHLIGPALGRHFENEEKLKVFHGANSDMIWLQRDFGIYVVNMFDT 337
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R+L+L L YLL +CG+ A K+YQ ADWR+RPL EM+ YAR DTH LLY++D
Sbjct: 338 GQAARILELPSFGLAYLLKQYCGIKAEKKYQLADWRLRPLSREMINYARSDTHSLLYVHD 397
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY----------- 169
+K +L + + + V+ +S DVC YE +++++ SY
Sbjct: 398 RLKQELYA-----KGGVECIQSVFLKSRDVCLLTYEPQVITDLSYHEDLMKSANASSGGG 452
Query: 170 ---------GLQGAGLNAQQL------AVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
Q A L+ + L A + L +WRD ARA+DES G+V+P ++ +
Sbjct: 453 SGHGNTLSRSAQQAQLSQEILKSPVAQAAMEALFKWRDDCARANDESLGFVMPRHLMLRL 512
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
A + P A + + + S + ++ + IIK++++ +
Sbjct: 513 ASEQPKVARDVVSTARGESSLVAKFSHVIADIIKSAVERGS 553
>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
Length = 1271
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 142/221 (64%), Gaps = 6/221 (2%)
Query: 1 MSLRTED--FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
M + TED +++DTL LR ++ L E+F PT KV HGAD DI WLQRD +Y+ NMF
Sbjct: 300 MQISTEDKDYLIDTLSLRSELHE-LNEIFTKPTILKVFHGADLDIQWLQRDLSLYVVNMF 358
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
DT QA++ L L SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI
Sbjct: 359 DTHQAAKQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYI 418
Query: 119 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
D++K L + N L VY RS ++C++ Y K + +E + + +Y N
Sbjct: 419 KDMLKNALIDVANGQINI---LKVVYDRSTEICKKTYVKPIWTEENCMTMYRKSQKMFNN 475
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+QL + L +WRD AR +D+S YVLPN L+ IA+ LP
Sbjct: 476 KQLYALRELHKWRDDTARIEDDSIAYVLPNHMLLNIAETLP 516
>gi|348690893|gb|EGZ30707.1| hypothetical protein PHYSODRAFT_553621 [Phytophthora sojae]
Length = 1507
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 155/245 (63%), Gaps = 14/245 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDTL LR ++ L +VF DP K KV+HG+D DI+WLQRD G+Y+ N+FDT
Sbjct: 292 ISTAREDFLVDTLALRGKLQT-LNQVFCDPAKVKVLHGSDMDILWLQRDLGLYIVNLFDT 350
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G+A+R+L+ R SL Y+L C ++A+K+YQ ADWR RPL M++YAREDT YLL+IYD
Sbjct: 351 GRAARLLQYPRFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYD 410
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+K +L + +++ ++ L + + S +C Q+YEK +E L + +N Q+
Sbjct: 411 RLKKEL--LQAGAKSRESFLFQTLQNSSKLCLQVYEKPQPTEEDALALGEKLKGTVNTQE 468
Query: 181 LA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR------LL 229
L+ V+ L WRD +AR +DES YV+ N L+++ K LP + +L R LL
Sbjct: 469 LSELQKRVIVALYLWRDRVARQEDESVAYVMANHVLMKLTKHLPVRSDELFRACHPVPLL 528
Query: 230 KSKHS 234
KH+
Sbjct: 529 IRKHA 533
>gi|340723182|ref|XP_003399974.1| PREDICTED: exosome component 10-like [Bombus terrestris]
Length = 1295
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 137/213 (64%), Gaps = 4/213 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL LR ++ L E+F T KV HGAD DI WLQRD +Y+ NMFDT QA++
Sbjct: 304 DYLIDTLSLRSELHE-LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQ 362
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L L SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI D+++ L
Sbjct: 363 LNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDLLRNAL 422
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+ N L VY RS ++C+ Y K + +E S + +Y N +QL +
Sbjct: 423 IDVANGQINI---LKAVYDRSTEICKNTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKE 479
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L +WRD AR +D+S GYVLPN L+ IA+ LP
Sbjct: 480 LHKWRDQTARGEDDSIGYVLPNHMLLNIAETLP 512
>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
Length = 900
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 143/220 (65%), Gaps = 7/220 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR ++ L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 314 MSTRSKDYIFDTLILRDEMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L L R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y+
Sbjct: 373 HRAAKALNLARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYE 432
Query: 121 IMKIKLSSMPKESENSDTPLT-EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
M L +++D L VY++S DVC++ Y K + S+L + + +
Sbjct: 433 RMTNDLL-----QQHADPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNR 487
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 488 QLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
Length = 901
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 142/219 (64%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS RT+D++ DTLKLR ++ L V DP K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 320 MSTRTKDYIFDTLKLREEMH-ILNLVLTDPKVLKILHGADLDIEWLQRDLSLYIVNMFDT 378
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+YIY+
Sbjct: 379 HRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYIYE 438
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+L++ +SE L VY+ S DVC++ Y K + +S+L + + +Q
Sbjct: 439 ----RLTNDLLQSEQGLQGLRMVYQMSTDVCKKRYTKPHIGPDSHLDLVRKTKRSFDNRQ 494
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 495 LHALRGIFVWRDSTARQEDESYGYVLPNHMMLQIAESLP 533
>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 737
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 134/222 (60%), Gaps = 4/222 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+V+DT+ LR ++ L ++F +P KV HGAD DI+WLQRD +Y+ NMFDT
Sbjct: 293 ISTRDTDYVIDTIALRSKLEG-LNKIFTNPNIVKVFHGADLDILWLQRDLSLYVVNMFDT 351
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA ++L SL YL+ HFC + A K +Q ADWR+RPLPDE+L YAREDTHYLLYIYD
Sbjct: 352 HQAGKLLNYSSLSLAYLMFHFCKIVAQKHFQMADWRIRPLPDELLAYAREDTHYLLYIYD 411
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ L E +N L V S +C + Y+K E+ Y+ IY + +Q
Sbjct: 412 NLRNILIEKSNEQKNL---LRTVINESTRICLKTYKKPNFDESGYMSIYTRSKKIFDNRQ 468
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
+ L WRD AR DES YVLPN ++ I++ LP A
Sbjct: 469 KYALQRLYAWRDSTARELDESLAYVLPNHMMLNISEVLPREA 510
>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
Length = 903
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 141/219 (64%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS RT+D++ D+L LR ++ L V DP K K++HGAD+DI WLQRD +Y+ NMFDT
Sbjct: 320 MSTRTKDYIFDSLALREEMH-VLNLVLTDPKKVKILHGADQDIEWLQRDLSLYVVNMFDT 378
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+Y+Y+
Sbjct: 379 HRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQDTHYLIYVYE 438
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M + + + + L VY+ S +VC++ Y K + S+L + + +Q
Sbjct: 439 RMT---NDILQAEQGQSQALRTVYQLSMEVCKKRYTKPHIGPESHLDLVRKTKRSFDNRQ 495
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + GL +WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 496 LHALRGLFQWRDATARQEDESYGYVLPNHMMLQIAESLP 534
>gi|389640871|ref|XP_003718068.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
gi|351640621|gb|EHA48484.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
Length = 828
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 166/309 (53%), Gaps = 8/309 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP+ KV HGA DIVWLQRD G+Y+ +FDT
Sbjct: 274 ISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L SL YLL F A+K YQ ADWR+RPLP+EML YAR DTHYLLY+YD
Sbjct: 334 FHAAEALMYPSKSLAYLLKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGA 174
+M+ +L + L +RS D Q YE + + ++
Sbjct: 394 MMRNELLRQSVSGDPHRDLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPN 453
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q +V L +WRD +AR +DES +++ N+ L++IA+ +P TA LRRL +
Sbjct: 454 TFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGP 513
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGR 294
+ + ++ +I++S Q A + + +K + A + + + D + K N G+
Sbjct: 514 PVRNAVDELVDLIQDSRQKGATGPSLLEVIKADSANAAF--SNMTLTDAYRSAKTTNAGQ 571
Query: 295 ESVDGVDAL 303
D DA+
Sbjct: 572 GDDDIPDAV 580
>gi|350418690|ref|XP_003491936.1| PREDICTED: hypothetical protein LOC100746784 [Bombus impatiens]
Length = 1271
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 137/213 (64%), Gaps = 4/213 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL LR ++ L E+F T KV HGAD DI WLQRD +Y+ NMFDT QA++
Sbjct: 304 DYLIDTLSLRSELHE-LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQ 362
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L + SL YLL H+C V+ +K +Q ADWR+RPLP+++++YAREDTHYLLYI D+++ L
Sbjct: 363 LNMPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLMKYAREDTHYLLYIKDLLRNAL 422
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+ N L VY RS ++C++ Y K + +E S + +Y N +QL +
Sbjct: 423 IDVANGQINI---LKAVYDRSTEICKKTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKE 479
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L +WRD AR +D+S YVLPN L+ IA+ LP
Sbjct: 480 LHKWRDQTARGEDDSIAYVLPNHMLLNIAETLP 512
>gi|440475179|gb|ELQ43880.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae Y34]
gi|440487108|gb|ELQ66914.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae P131]
Length = 854
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 166/309 (53%), Gaps = 8/309 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP+ KV HGA DIVWLQRD G+Y+ +FDT
Sbjct: 300 ISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDT 359
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L SL YLL F A+K YQ ADWR+RPLP+EML YAR DTHYLLY+YD
Sbjct: 360 FHAAEALMYPSKSLAYLLKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYD 419
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGA 174
+M+ +L + L +RS D Q YE + + ++
Sbjct: 420 MMRNELLRQSVSGDPHRDLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPN 479
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q +V L +WRD +AR +DES +++ N+ L++IA+ +P TA LRRL +
Sbjct: 480 TFSREQFSVYRALHKWRDDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGP 539
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGR 294
+ + ++ +I++S Q A + + +K + A + + + D + K N G+
Sbjct: 540 PVRNAVDELVDLIQDSRQKGATGPSLLEVIKADSANAAF--SNMTLTDAYRSAKTTNAGQ 597
Query: 295 ESVDGVDAL 303
D DA+
Sbjct: 598 GDDDIPDAV 606
>gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
Length = 905
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 141/219 (64%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS RT+D++ D+L LR ++ L V DP K K++HGAD+DI WLQRD +Y+ NMFDT
Sbjct: 320 MSTRTKDYIFDSLALREEMH-VLNLVLTDPKKVKILHGADQDIEWLQRDLSLYVVNMFDT 378
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+Y+Y+
Sbjct: 379 HRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQQLIDYARQDTHYLIYVYE 438
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M + + + + L VY+ S +VC++ Y K + S+L + + +Q
Sbjct: 439 RMT---NDLLQAEQGQSQALRTVYQLSTEVCKKRYTKPHVGPESHLDLVRKTKRSFDNRQ 495
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ +WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 496 LHALRGIFQWRDATARQEDESYGYVLPNHMMLQIAESLP 534
>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
Length = 900
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 7/220 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 314 MSTRSKDYIFDTLILREDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L L R SL YLL ++ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y+
Sbjct: 373 HRAAKALNLARLSLAYLLKYYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYE 432
Query: 121 IMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
M L + +DT L VY++S DVC++ Y K + S+L + + +
Sbjct: 433 RMTNDLL-----QQQTDTGLLASVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNR 487
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QL + G+ EWRD AR +DES GYVLPN +++IA+ LP
Sbjct: 488 QLYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLP 527
>gi|13278238|gb|AAH03952.1| Exosc10 protein, partial [Mus musculus]
Length = 517
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Query: 44 VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDE 103
V LQ+DFG+Y+ NMFDT QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+E
Sbjct: 3 VGLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEE 62
Query: 104 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 163
ML YAR+DTHYLLYIYD M+++L + + L V++RS D+C + + K + ++
Sbjct: 63 MLSYARDDTHYLLYIYDRMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDE 119
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
SYL +Y Q LN+QQL L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 120 SYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 175
>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
Length = 900
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 138/219 (63%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 314 MSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y
Sbjct: 373 HRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYG 432
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M L E L VY++S DVC++ Y K + S+L + + +Q
Sbjct: 433 RMTNDLLQQHAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 488
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 489 LYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
Length = 930
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 138/219 (63%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 344 MSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 402
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y
Sbjct: 403 HRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYG 462
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M L E L VY++S DVC++ Y K + S+L + + +Q
Sbjct: 463 RMTNDLLQQHAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 518
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 519 LYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 557
>gi|383792210|gb|AFH41845.1| FI19715p1 [Drosophila melanogaster]
Length = 930
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 138/219 (63%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 344 MSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 402
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y
Sbjct: 403 HRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYG 462
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M L E L VY++S DVC++ Y K + S+L + + +Q
Sbjct: 463 RMTNDLLQQHAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 518
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 519 LYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 557
>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
Length = 813
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 138/219 (63%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S T D+++DTL LR ++ L E+F P+ KV HGAD DI+WLQRD +Y+ NMFDT
Sbjct: 305 ISTITTDYLIDTLTLRSELH-RLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDT 363
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R L L SL +L+ +C ++ NK++Q ADWR+RPLP E+ RYAREDT YLLYI D
Sbjct: 364 HQAARQLNLPYLSLAHLIKKYCDIDLNKQFQLADWRIRPLPLELTRYAREDTRYLLYIKD 423
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L N L VY +S ++C++ Y K + +E S + +Y N +Q
Sbjct: 424 MLNNELIDAANGKSNI---LKAVYDQSTEICKRTYVKPIWTEESCIDLYRKSRKSFNNKQ 480
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + L WRD+IAR +D+S YVLP ++ IA+ LP
Sbjct: 481 MYALVELHRWRDLIAREEDDSIDYVLPKHMMLNIAETLP 519
>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
Length = 896
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 155/247 (62%), Gaps = 9/247 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 314 MSTRSKDYIFDTLILRDDMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y+
Sbjct: 373 HRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYE 432
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M L E L VY++S DVC++ Y K + S+L + + +Q
Sbjct: 433 RMTNDLLQQQAEP----GLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 488
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L + G+ EWRD AR++DES GYVLPN +++IA+ +++ ++ +L ++++ I + +
Sbjct: 489 LYALRGIFEWRDATARSEDESYGYVLPNHKMVQIAE---SSSREMHGIL-ARYNLIPQLL 544
Query: 241 GPVLSII 247
+L I+
Sbjct: 545 HTLLPIV 551
>gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis]
gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis]
Length = 904
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 140/219 (63%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS RT+D++ DTL LR + L V DP K++HG D DI WLQRD +Y+ NMFDT
Sbjct: 317 MSTRTKDYIFDTLTLREDMH-ILNLVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMFDT 375
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTHYL+Y+Y+
Sbjct: 376 HRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYVYE 435
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+L++ ++E L VY+ S +VC++ Y K + +S+L + + +Q
Sbjct: 436 ----RLTNDLLQAEQGPQALRMVYQMSTEVCKKRYTKPHIGPDSHLDLVRKTKRSFDNRQ 491
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L+ + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 492 LSALRGIFVWRDATARQEDESYGYVLPNHMMLQIAESLP 530
>gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni]
gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni]
Length = 913
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 137/219 (62%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS ++D++ DTL LR + L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 327 MSTCSKDYIFDTLVLREDMQ-LLNLVMTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 385
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L + R SL +LL H+ ++ +K Q ADWR+RPLP E++ YAR+DTHYL+Y+Y
Sbjct: 386 HRAAKALNMARLSLAFLLKHYVDLDVDKSLQLADWRMRPLPQELINYARQDTHYLIYVYQ 445
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ + + K L VY+ S +VCR+ Y K + +S+L + + +Q
Sbjct: 446 CLT---NDLLKLDNGHQQILRSVYQMSTEVCRKRYTKPHIGPDSHLDLVRKTKQIFDNRQ 502
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + GL EWRD AR +DES GYV+PN +++IA+ LP
Sbjct: 503 LHALRGLFEWRDTTARQEDESYGYVMPNHMMLQIAESLP 541
>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
Length = 909
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 138/219 (63%), Gaps = 5/219 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS R++D++ DTL LR ++ L V DP K K++HGAD DI WLQRD +Y+ NMFDT
Sbjct: 326 MSTRSKDYIFDTLILRDEMH-ILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDT 384
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L L R SL +LL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+Y+Y+
Sbjct: 385 HRAAKALNLARLSLAFLLKHYIDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYE 444
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M L E + L VY S +VC++ Y K + S+L + + +Q
Sbjct: 445 RMTNDLL----EQQVETGLLNNVYMMSTEVCKKRYNKPHVGPESHLDLVRKTKRNFDNRQ 500
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ EWRD AR +DES GYVLPN +++IA+ LP
Sbjct: 501 LYALRGIFEWRDATARLEDESYGYVLPNHMMLQIAESLP 539
>gi|341889055|gb|EGT44990.1| hypothetical protein CAEBREN_17638 [Caenorhabditis brenneri]
Length = 864
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 164/275 (59%), Gaps = 19/275 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++D + ++G L + F +PT KV+HG+D D++WLQRDFG+++ N+FDT
Sbjct: 314 ISTRDEDFIIDPFPIWDEIG-ILNDPFANPTILKVLHGSDNDVLWLQRDFGVHIVNLFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + LK + +L YL+ F V +K+YQ ADWR RPL M+ YAREDTHYLLY YD
Sbjct: 373 YVAMKKLKFPKFNLAYLVSRFADVILDKQYQLADWRARPLSKAMINYAREDTHYLLYCYD 432
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ +L K++E L +Y DVC ++Y+K + + Y+ L+ A LN++Q
Sbjct: 433 MLREQLL---KQNEQD---LASMYSECTDVCVRVYKKPVFNPKGYMTEIKLRFA-LNSRQ 485
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
V+ L WRD +ARA+DES +VLPN L+ I++ LP + ++++ +
Sbjct: 486 DYVLTNLYRWRDTVARAEDESPQFVLPNTMLLNISESLPRDIGSIYGCCNPLPLFVKKRV 545
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 275
G +L I+ V A+ +K E++E ++E
Sbjct: 546 GDILKIV-----------VQARDVKLEKIERTTKE 569
>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10-like, partial [Taeniopygia guttata]
Length = 504
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 125/172 (72%), Gaps = 4/172 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL LR + L E F DP KV+HGAD D+ WLQRDFG+YL N+FDT
Sbjct: 335 ISTRTEDFIIDTLALRSDMN-ILNETFTDPAIVKVLHGADSDVEWLQRDFGLYLVNVFDT 393
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV+A+K+YQ ADWR+RPLP+EM+RYAR+DTHYLLYIYD
Sbjct: 394 HQAARLLNLGRHSLDHLLKLYCGVDADKKYQLADWRIRPLPEEMIRYARDDTHYLLYIYD 453
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ 172
++ L KE T L V++RS D+C + Y K L ++ SYL +Y Q
Sbjct: 454 KVRELLWERGKEQP---TQLQVVWQRSRDICLKKYIKPLFTDESYLDLYRRQ 502
>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
gi|353232486|emb|CCD79841.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
Length = 830
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 148/248 (59%), Gaps = 10/248 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS D+++D L LR + L EVF DP KV HG+D D++WLQRDFG+Y+ N+FDT
Sbjct: 257 MSTLGSDYIIDALALRDHLS-ILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDT 315
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A+R+L+ R SL YLL F G+ ANK+YQ ADWR+RPLP+E++ YAR DTHYLL+I
Sbjct: 316 GIAARLLQYGRFSLSYLLQRFVGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHI-- 373
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQ 179
S M +E ++ D L+ +R+ +C + Y K + + YL +Y G + + +
Sbjct: 374 -----ASRMCRELQDRDL-LSVAIERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHR 427
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
QL + L RD IAR +DES YVLPN L IA+ LP ++ + + +Y
Sbjct: 428 QLYALENLYALRDSIARREDESLHYVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKY 487
Query: 240 MGPVLSII 247
+ + II
Sbjct: 488 VHDLHKII 495
>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
Length = 741
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 150/252 (59%), Gaps = 4/252 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ED++VD L+LR + L VF D KV HGA D+ WLQ+DFG+Y+ NMFDT
Sbjct: 262 LSTRSEDYIVDVLRLRSHMH-RLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDT 320
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + +SL + + HFCGV +K+YQ ADWR+RP+P EM+ YAR+DTHYLLY++D
Sbjct: 321 GIALQTLHMP-HSLAFAVDHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHD 379
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSYLHIYGLQGAGLNAQ 179
+K L + + L VY+ S +C YEK +L + +Y G GL+A
Sbjct: 380 RLKALLLHAEGRASVGNL-LVHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGGLSAT 438
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
QL V+ + WRD AR DES ++ +++IA +LPT+A ++ + R
Sbjct: 439 QLEVLRVVFNWRDQAARDADESPPAIMHASAILQIASKLPTSAKEILACCAPVSLVVRRD 498
Query: 240 MGPVLSIIKNSM 251
+G + ++K ++
Sbjct: 499 IGHLCDLVKKTL 510
>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
Length = 860
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 158/275 (57%), Gaps = 19/275 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++D + +G L E F +P KV HGAD D++WLQRDFGI++ N+FDT
Sbjct: 311 ISTRDEDFIIDPFPMWDCIG-ILNEPFTNPKILKVFHGADNDVLWLQRDFGIHIVNLFDT 369
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD
Sbjct: 370 YVAMKKLKYPKFSLAYLAFRFADVILDKQYQLADWRARPLRNAMINYAREDTHYLLYSYD 429
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ +L K+ L VY D+C ++Y+K + YL L+ N++Q
Sbjct: 430 MLREQLLKQDKKD------LNVVYSECNDLCVRVYKKPVFKPKGYLTDLKLRFT-FNSRQ 482
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ L +WRDV+AR +DES +VLPN L+ +A+QLP + ++++
Sbjct: 483 DHALTSLYKWRDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLA 542
Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEE 275
G +L II V A+++K E+++V ++E
Sbjct: 543 GQILKII-----------VEAREVKLEKVKVTAKE 566
>gi|391347098|ref|XP_003747802.1| PREDICTED: exosome component 10-like [Metaseiulus occidentalis]
Length = 867
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 140/219 (63%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S +D+++D L+LR + L EV DP KV+HG+ D+ WLQRDFG+Y+ N+FDT
Sbjct: 294 VSTWDKDYIIDPLELRGHLH-VLNEVTTDPKIVKVLHGSHSDVQWLQRDFGVYIVNLFDT 352
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A+++L ER SL YLL F V ++K +Q DWR+RPLP EM+ YAR DTHYLL I +
Sbjct: 353 GIAAKLLNYERLSLSYLLKKFEQVESDKRFQLVDWRIRPLPKEMIEYARTDTHYLLSICE 412
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+K +L++ E+ N + V++RS +C + YEK +L+E S+ ++ N +Q
Sbjct: 413 KLKEELNNASNEAGNL---MKAVWQRSSLLCLKRYEKPILTEESHRNLLKTANKRFNDKQ 469
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + + WRD +AR DESTGYVLPN L+ I + LP
Sbjct: 470 LYALKHIFAWRDRLARELDESTGYVLPNHMLLNICELLP 508
>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
Length = 911
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 138/219 (63%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS RT+D++ DTL LR + L V DP K++HG D DI WLQRD +Y+ NMFDT
Sbjct: 325 MSTRTKDYIFDTLILRDDMH-ILNLVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMFDT 383
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++ L L R SL +LL + ++ +K Q ADWR+RPLP +++ YAR+DTHYL+YIY+
Sbjct: 384 HRAAKALNLARLSLAFLLKFYLDMDVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYIYE 443
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ ++ + + + L VY++S D+C++ Y K + +S+L + + +Q
Sbjct: 444 RL---VNDLLQSEQGQSHSLRMVYQQSTDICKKRYTKPYIGPDSHLDLVRKTKRSFDNRQ 500
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L + G+ WRD AR +DES GYVLPN +++IA+ LP
Sbjct: 501 LYALRGIFTWRDATARQEDESYGYVLPNHMMLQIAESLP 539
>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
Length = 451
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 137/213 (64%), Gaps = 4/213 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
DF++D L +R + L VF DP K KV HGAD D++WLQRDFG+YL +FDT A++
Sbjct: 175 DFIIDALAVREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKS 233
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L L SL++LL +CGV+ +K Y+ ADWR+RPLPD +++YAR DTHYLLY++ +MK
Sbjct: 234 LGLPALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMK--- 290
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+ + +++ L V++ S C Y KE++ + S++ +Y + QQ+A +
Sbjct: 291 NQIIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKM 350
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L +WRD AR DEST Y+LPN L+ +++ LP
Sbjct: 351 LYKWRDSQARQLDESTTYLLPNHMLLSLSENLP 383
>gi|392566464|gb|EIW59640.1| hypothetical protein TRAVEDRAFT_147720 [Trametes versicolor
FP-101664 SS1]
Length = 850
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 170/330 (51%), Gaps = 43/330 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R DFVVDT+ LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 287 ISTREADFVVDTIALRDEM-EELNEVFTDPDVVKVFHGAESDIVWLQQDFNLYVVNLFDT 345
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL R+ L LL +C A+K YQ ADWR+RPLP+EML+YAR DTH+LL+IYD
Sbjct: 346 YHASKVLDFPRHGLATLLEMYCDFTADKRYQLADWRIRPLPEEMLQYARSDTHFLLFIYD 405
Query: 121 IMKIKL-----------SSMPKESENSDTP----------LTEVYKRSYDVCRQLYEKEL 159
++ L + P S + TP + EV RS + + YEKEL
Sbjct: 406 NLRNALLDRAQSRAQSRAQSPSSSAATPTPESSYPPAHALVREVLSRSEETALREYEKEL 465
Query: 160 LSENSYLHIYGL-------------------QGAGLNAQQLAVVAGLCEWRDVIARADDE 200
++ G +GA Q AV + WRD IAR +DE
Sbjct: 466 YDTDTGAGPGGWDTLARKWNKASLMAVSSDREGATAVNVQRAVYRTVHGWRDRIAREEDE 525
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVI 260
ST YVLPN L +A++ P A L + I R +L I+++++ A
Sbjct: 526 STRYVLPNHYLFSLAERTPADMAALLSVFHPVPPVIRRRAKELLDAIRDTVKGA--LGPT 583
Query: 261 AQKLKEERMEVASEETEVLVLDTSSNLKIP 290
A+ + A++E +L+ + +S ++P
Sbjct: 584 AETPRAPAGPSAAQEVAMLIDEEASAAEMP 613
>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
Length = 827
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 155/272 (56%), Gaps = 6/272 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 270 ISTREKDWIIDTLVPWRHKLEVLNEVFADPKIVKVLHGAFMDIIWLQRDLGLYVVGLFDT 329
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L+ SL +LL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYIYD
Sbjct: 330 FYASTALQYAGKSLAFLLKKFVDFDADKKYQLADWRLRPLPEEMFYYARSDTHFLLYIYD 389
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQGAG 175
+++ +L+ + ++ + P V ++S +V Q YE + N H + +
Sbjct: 390 MLRNELAQLATQNGSDGHPTDRVIQKSKEVALQRYENSFCDPETGAGNRGWHATLTKSST 449
Query: 176 L-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L +++Q AV + +WRD IAR +DES +++ + L IA+ +PT L LL+S
Sbjct: 450 LYDSEQFAVYKAVHKWRDDIARQEDESPFFIMTQQVLSNIARIMPTDMKALWSLLESNTG 509
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 266
++ +G + II + AN + Q ++
Sbjct: 510 ALKSRLGELFKIITEAKAQGANGPTMLQFFRQ 541
>gi|403418903|emb|CCM05603.1| predicted protein [Fibroporia radiculosa]
Length = 751
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 165/325 (50%), Gaps = 48/325 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R ED+VVD L +R ++ L EV DP KV+HGA+ DI+WLQ+DF +Y+ N+FDT
Sbjct: 183 ISTRDEDWVVDALAVRDEMEA-LNEVLTDPAIVKVLHGAESDIIWLQQDFNLYIVNLFDT 241
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS++L+ R+SL LL +C A+K YQ ADWR+RPLP+EML YAR DTH+LL+IYD
Sbjct: 242 YHASKILEFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLFIYD 301
Query: 121 IMKIKL----SSMPKESENSDTPLT----------------EVYKRSYDVCRQLYEKELL 160
++ L S P S + + EV RS D ++YEKE+
Sbjct: 302 NLRNALIDRAQSRPHSRSQSPSAVVTSPSSHPTNQAHALVREVLSRSEDTALRVYEKEIY 361
Query: 161 SE----------------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
N + + G G A Q + G+ WRD IAR +DEST Y
Sbjct: 362 DADSGAGPGGWDTLARKWNKGVLMAGAPEGGPYAVQRTIYRGVHAWRDRIAREEDESTRY 421
Query: 205 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 264
VLPN L +A++ P A L LL I R +L I+ ++ + A
Sbjct: 422 VLPNHYLFVLAERPPADMAALLSLLHPVPPVIRRRSKELLDAIRAAIASVAPVS------ 475
Query: 265 KEERMEVASEETEVLVLDTSSNLKI 289
M VA EE + VL + L I
Sbjct: 476 ----MTVA-EEAKTNVLAAADGLTI 495
>gi|452978276|gb|EME78040.1| hypothetical protein MYCFIDRAFT_107101, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 799
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 136/237 (57%), Gaps = 10/237 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+YL +FDT
Sbjct: 272 ISTRDKDWIVDTLKPWRRKLQCLNEVFADPNILKVLHGAYMDIIWLQRDLGLYLVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL YLL F GV+A K+YQ ADWRVRPLP + YAR DTHYLLYI+D
Sbjct: 332 HHAARALGYPAGSLAYLLKRFAGVDAQKKYQTADWRVRPLPQALFDYARSDTHYLLYIFD 391
Query: 121 IMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-EN-----SYLHIYGL 171
++ I+ S + D L +V +S + Q YE + EN + +
Sbjct: 392 NLRNELIQRSDFGLPNHEGDK-LWDVLTKSSETALQRYEHPIYDVENGQGSFGWYKLLAK 450
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
A L +Q +V + +WRD +AR D+ST +V+PN L IAK +PTT L L
Sbjct: 451 TSAMLTKEQFSVFRAVHQWRDEVAREQDDSTNFVMPNWQLFNIAKSMPTTRQALFSL 507
>gi|367047893|ref|XP_003654326.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
gi|347001589|gb|AEO67990.1| hypothetical protein THITE_2117244 [Thielavia terrestris NRRL 8126]
Length = 882
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 150/272 (55%), Gaps = 6/272 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 271 ISTREKDWIVDTLVPWRHKLEVLNEVFADPRIVKVLHGAFMDIIWLQRDLGLYVVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L SL +LL F +A+K+YQ ADWR+RPLPDEM YAR DTHYLLYIYD
Sbjct: 331 YYACDALGYAGRSLAFLLKKFADFDADKKYQLADWRIRPLPDEMFYYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL---- 176
+++ +L+ + +S + P+ V ++S +V Q Y L + G +
Sbjct: 391 MLRNELAELSAQSPPGEKPIDRVIQKSKEVSLQRYVHPLCDRETGAGSRGWYNTLIKSPT 450
Query: 177 --NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
N +Q AV + +WRD +AR +DES Y++ + L +IA+ LPT L LL S
Sbjct: 451 LYNGEQFAVYKAVHKWRDDVARREDESPYYIMTQQVLADIARILPTDPKALWSLLDSNAR 510
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 266
++ + + +I+ + AN + + K+
Sbjct: 511 ALKPRLTELFGVIERARAAGANGPTMMEFFKQ 542
>gi|315054289|ref|XP_003176519.1| exosome component 3'-5' exonuclease [Arthroderma gypseum CBS
118893]
gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
Length = 827
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 150/266 (56%), Gaps = 10/266 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 294 ISTREQDWIVDTLKPWRDQLQILNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDT 353
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ VL+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 354 FHAASVLQLPKKSLKFLLHEYVGFDADKKYQTADWRIRPLLTGMLDYARSDTHFLLYIFD 413
Query: 121 IMKIKLSSMPKESENSDTPLTE----VYKRSYDVCRQLYEKELL------SENSYLHIYG 170
++ +L ++ + ++ E V +RS + Q YE+ + +
Sbjct: 414 RLRNELLALDSDLSSAGVGGREAIECVLERSKESALQRYERPTYDAARGRGSGGWHDMLS 473
Query: 171 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 230
L +Q AV L EWRD +AR DDEST VL R+L IA+++P + R+
Sbjct: 474 TSPVALTREQFAVFRALHEWRDKVARTDDESTQTVLSKRSLFRIAQEMPEDKFAVLRMAS 533
Query: 231 SKHSYIERYMGPVLSIIKNSMQNAAN 256
+ + V ++I+ + Q A
Sbjct: 534 PVSASLRSRTDEVAALIRQARQGGAT 559
>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
gi|134073021|emb|CAM71740.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
Length = 743
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 153/255 (60%), Gaps = 6/255 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N FDT
Sbjct: 276 ISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + +SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+YD
Sbjct: 335 GVALQTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVYD 393
Query: 121 IMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNA 178
+K + L+S + S S L VY S + Q+YEK ++ E +Y G +GLN
Sbjct: 394 RLKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGLNK 451
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
Q V + WRD AR D+S VL +++ IA +LPTTA L R + +
Sbjct: 452 VQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRD 511
Query: 239 YMGPVLSIIKNSMQN 253
+ ++ ++K+++ +
Sbjct: 512 NVALLVDLVKDAVAS 526
>gi|398022862|ref|XP_003864593.1| unnamed protein product [Leishmania donovani]
gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani]
Length = 743
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 153/255 (60%), Gaps = 6/255 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N FDT
Sbjct: 276 ISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + +SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY+YD
Sbjct: 335 GVALQTLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVYD 393
Query: 121 IMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNA 178
+K + L+S + S S L VY S + Q+YEK ++ E +Y G +GLN
Sbjct: 394 RLKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGLNK 451
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
Q V + WRD AR D+S VL +++ IA +LPTTA L R + +
Sbjct: 452 VQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRD 511
Query: 239 YMGPVLSIIKNSMQN 253
+ ++ ++K+++ +
Sbjct: 512 NVALLVDLVKDAVAS 526
>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
yFS275]
Length = 782
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 161/283 (56%), Gaps = 25/283 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+LR ++ L VF DP KV+HGA D++WLQRDFG+YL +FDT
Sbjct: 260 ISTRNQDWIVDTLELREELE-CLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVGLFDT 318
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L E + L +LL +C A+K YQ ADWR+RPLP EML+YA+ DTH+LLY++D
Sbjct: 319 YYATKALGFEGHGLAFLLKKYCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYVFD 378
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++++L + + S + + V K S DV + YE+E +Y IYGL G
Sbjct: 379 CLRVEL--LEQSSRRKEDLMQYVVKSSDDVALRRYERE-----AYDEIYGLGTDGWRHVL 431
Query: 176 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + LAV L WRD +AR +DES YV+PN L+++A +P+ + L
Sbjct: 432 TKWGSSKIIGREALAVFKSLHRWRDQVARNEDESVRYVMPNHLLVKLAASMPSDPSDLYT 491
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+ + Y ++ +I QNA EV E+R E
Sbjct: 492 SARQLPPLVRMYANEIIEVI----QNAREDEVKRATTDEQRTE 530
>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
dendrobatidis JAM81]
Length = 826
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 154/283 (54%), Gaps = 8/283 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL LR + L F +P KV HGA+ DI WLQRDFG+Y+ ++FDT
Sbjct: 291 ISTRTEDFLVDTLILRNSLHA-LNTSFANPQIVKVFHGAEMDIQWLQRDFGVYVVDLFDT 349
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L+LE +SL +LL ++C V +K YQ ADWR+RPLP EM+ YAR DTHYLLYI+D
Sbjct: 350 YHASHALELEGHSLAFLLKYYCDVVTDKRYQLADWRIRPLPKEMVHYARMDTHYLLYIFD 409
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYGLQGAG 175
M+ +L + K + + + +RS Y+ K+ LS N + +
Sbjct: 410 RMRNEL--LNKSNPETHNLMHVTLERSGLTSLNTYQKAPYCKDGLSPNGWRSLLNRLKIS 467
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 235
N + LAV + EWRD IAR +DES +VLPN L +++ +PT + S
Sbjct: 468 FNEENLAVFKAIHEWRDRIARKEDESLRFVLPNHMLQTLSRVMPTDGPAVVACCSPTPSL 527
Query: 236 IERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV 278
+ Y + +I ++ + + + A+ E++
Sbjct: 528 VRLYSKELAHLIFQTVNTVRQLTTMKNNAAKNILSQATSESDT 570
>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
Length = 790
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+FDT
Sbjct: 299 ISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDT 357
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L L + SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+YD
Sbjct: 358 FFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYD 417
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQ 179
++ L + E T E+++ S + YEK + E+ Y +Y + N Q
Sbjct: 418 RLRADLEKL----EFGAT--REIFRLSREFSLSKYEKPIFGESDYKKLYESKNRKKFNNQ 471
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QL + L WRD IAR +DEST YV+PN L+++++ LP
Sbjct: 472 QLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEILP 511
>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
Length = 497
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 122/169 (72%), Gaps = 4/169 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIY 169
M+++L + + L V++RS D+C + + K + ++ SYL +Y
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELY 495
>gi|334184634|ref|NP_001189656.1| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 872
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 137/239 (57%), Gaps = 17/239 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 162 ISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDT 220
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 221 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD 280
Query: 121 IMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIY 169
+ +L + +S + D L E +RS C QLY KE S Y H+
Sbjct: 281 SLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLN 340
Query: 170 GL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 341 GHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397
>gi|240254568|ref|NP_850189.5| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 891
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 137/239 (57%), Gaps = 17/239 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 162 ISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDT 220
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 221 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD 280
Query: 121 IMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL--------LSENSYLHIY 169
+ +L + +S + D L E +RS C QLY KE S Y H+
Sbjct: 281 SLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLN 340
Query: 170 GL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 341 GHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397
>gi|440640360|gb|ELR10279.1| hypothetical protein GMDG_04665 [Geomyces destructans 20631-21]
Length = 782
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 150/271 (55%), Gaps = 6/271 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 264 ISTREKDWIVDTLKPWRQDLQVLNEVFTDPKILKVLHGAFMDILWLQRDLGLYIVGLFDT 323
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + L SL +LL F +A+K+YQ ADWR+RPLP+ M YAR DTH+LLYIYD
Sbjct: 324 NHACKALGYAGGSLAFLLKKFIDFDADKKYQMADWRIRPLPEGMFFYARADTHFLLYIYD 383
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
M+ +L K + L V ++S + Y+ + + + +
Sbjct: 384 NMRNELVERSKPVPAEENRLEIVLRKSKETSLFRYDSPRYNATTGKGPGGWFQALVKVPS 443
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
LN +Q AV + WRD IAR DD+ST +V+ N TL+ +AK +PT A L +
Sbjct: 444 LLNNEQFAVFRAVHAWRDKIARQDDDSTNFVMANHTLLSVAKVMPTDMASLLGTVHPISY 503
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLK 265
++ G +L +IK + NA + +A+ LK
Sbjct: 504 NVKARTGELLELIKAAKTNAKDGPSMAEVLK 534
>gi|157876102|ref|XP_001686412.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
Length = 742
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 153/255 (60%), Gaps = 6/255 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD LKLR +G L VF +P+ KV+HGA DI WLQ+DF +Y+ N+FDT
Sbjct: 275 ISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY++D
Sbjct: 334 GVALQTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVHD 392
Query: 121 IMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNA 178
+K + L+S + S S L VY S + Q+YEK ++ E +Y G +GLN
Sbjct: 393 RLKALLLNSEGRASIGS--VLVHVYNESKQLSLQIYEKPNVVPEETYKMALGRSLSGLNK 450
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
Q V + WRD AR D+S VL +++ IA +LPTTA L R + +
Sbjct: 451 VQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRD 510
Query: 239 YMGPVLSIIKNSMQN 253
+ ++ ++K+++ +
Sbjct: 511 NVTLLVDLVKDAVAS 525
>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
Length = 689
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+FDT
Sbjct: 299 ISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDT 357
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L L + SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+YD
Sbjct: 358 FFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYD 417
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQ 179
++ L + E T E+++ S + YEK + E+ Y +Y + N Q
Sbjct: 418 RLRADLEKL----EFGAT--REIFRLSREFSLSKYEKPIFGESDYKKLYESKNRKKFNNQ 471
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
QL + L WRD IAR +DEST YV+PN L+++++ LP
Sbjct: 472 QLKALELLYAWRDQIARFEDESTDYVIPNHILLQVSEILP 511
>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 892
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 139/242 (57%), Gaps = 22/242 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 162 ISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDT 220
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 221 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD 280
Query: 121 IMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYL 166
+ +L + +E+S +P L E +RS C QLY KE S Y
Sbjct: 281 SLTTELKQLA--TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYR 338
Query: 167 HIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
H+ G LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT
Sbjct: 339 HLNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTE 396
Query: 224 KL 225
++
Sbjct: 397 EI 398
>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 1631
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 163/294 (55%), Gaps = 34/294 (11%)
Query: 1 MSLRTEDFVVDTL---KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+S R +D+VVDTL + R+++ L EVF DPTK KV HGA DIVWLQRD G+Y+ +
Sbjct: 271 ISTREKDWVVDTLTPWRHRLEI---LNEVFADPTKIKVFHGATSDIVWLQRDLGLYIVGL 327
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT A L+ SL YLL F +A+K+YQ ADWR+RPLP+EML YAR DTH+LLY
Sbjct: 328 FDTYFACDCLEYPARSLAYLLKKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFLLY 387
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE--------------- 162
+YD+++ +L +E S+ L E Y V R+ E +L
Sbjct: 388 VYDMVRNEL------AEKSEKLLPEASLTGY-VLRRSKETSMLRHEVALCDPETGLGSRG 440
Query: 163 --NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
NS + Y + LN+ Q AV + WRD +AR DES GYV+P R++ +IA+ LP+
Sbjct: 441 WLNSLMRTYSM----LNSSQFAVFKAIFRWRDDLARRLDESPGYVMPIRSVGDIARILPS 496
Query: 221 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
+ LL + + M + +I+ + A+ ++ L+ E + AS+
Sbjct: 497 DRKAMWSLLNNAARETKSSMEEIFLLIQQAKLRGADGPSSSEFLRSEAVGAASK 550
>gi|452835556|gb|AGG14045.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 149/254 (58%), Gaps = 4/254 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N FDT
Sbjct: 276 ISTREEDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+YD
Sbjct: 335 GVALQTLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L VYK S + QLYEK +++ E +Y G +GLN
Sbjct: 394 RLKALLLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLNKV 452
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
Q V + WRD AR D+S VL +++ IA +LP TA +L R + +
Sbjct: 453 QEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDN 512
Query: 240 MGPVLSIIKNSMQN 253
+ ++ +K+++ N
Sbjct: 513 VALLVDFVKDAVAN 526
>gi|347827584|emb|CCD43281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 823
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +FDT
Sbjct: 266 VSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A R L SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI+D
Sbjct: 326 HYACRRLGFAGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFD 385
Query: 121 IMKIKLSSMPK-ESENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLHIY 169
++ +L P E+ +++TP + V ++S + YE++L + S + +
Sbjct: 386 NLRNELLDAPDVETPDAETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFSLI 445
Query: 170 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
A L+++Q +V + WRD IAR DD+S +V+ N ++ +AK +P L ++
Sbjct: 446 YKTPALLSSEQFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSII 505
Query: 230 KSKHSYIERYMGPVLSIIKNSMQNAAN 256
+ ++ G +L +IK + +N +
Sbjct: 506 RPISHSVKSRTGELLEVIKAAKENGKD 532
>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
Length = 860
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 135/214 (63%), Gaps = 10/214 (4%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++D L L + L EVF DP KV HG+D D++WLQRDFG+Y+ N+FDTG A+R+
Sbjct: 307 DYIIDALALHDHLS-ILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGVAARL 365
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L+ R SL YLL + +N NK+YQ ADWR+RPLP+E++ YAR DTHYLL+I
Sbjct: 366 LQHGRFSLSYLLQRYVNINPNKKYQLADWRIRPLPNELIEYARTDTHYLLHI-------A 418
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLNAQQLAVVA 185
S M +E ++ + L+ ++R+ +C + Y K + + YL +Y G + + +QL +
Sbjct: 419 SRMCRELQDRNL-LSVTFERARQLCLKCYTKPVFNRLGYLDLYKQTGCSSFSHRQLYALE 477
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L RD IAR +DES YVLPN L IA+ LP
Sbjct: 478 NLHALRDSIARREDESLHYVLPNHMLKVIAEVLP 511
>gi|401428763|ref|XP_003878864.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 743
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 151/253 (59%), Gaps = 6/253 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD LKLR +G L VF +P+ KV HGA DI WLQ+DF +Y+ N FDT
Sbjct: 276 ISTREEDFIVDCLKLRSSMGA-LAPVFLNPSILKVFHGAREDIRWLQKDFSLYVVNFFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + SL + + HFC V NK+YQ ADWRVRPL EM+ YAR+DTH+LLY++D
Sbjct: 335 GVALQTLHMP-YSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVHD 393
Query: 121 IMK-IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNA 178
+K + L+S + S S L VY S + Q+YEK ++ E +Y G +GLN
Sbjct: 394 RLKALLLNSEGRASIGS--LLVHVYNESKQLSLQIYEKPNVVPEETYKIALGRSLSGLNK 451
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
Q V + WRD AR D+S VL +++ IA +LPTTA +L R + +
Sbjct: 452 VQEKVACDVFNWRDSAAREVDDSPMAVLHLSSVLSIASKLPTTAKELLRCCAPATAVVRD 511
Query: 239 YMGPVLSIIKNSM 251
+ ++ ++K+++
Sbjct: 512 NVALLVDLVKDAV 524
>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
Length = 823
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +FDT
Sbjct: 266 VSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A R L SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI+D
Sbjct: 326 HYACRRLGFAGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFD 385
Query: 121 IMKIKLSSMPK-ESENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLHIY 169
++ +L P E+ +++TP + V ++S + YE++L + S + +
Sbjct: 386 NLRNELLDAPDVETPDAETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFSLI 445
Query: 170 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
A L+++Q +V + WRD IAR DD+S +V+ N ++ +AK +P L ++
Sbjct: 446 YKTPALLSSEQFSVFKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSII 505
Query: 230 KSKHSYIERYMGPVLSIIKNSMQNAAN 256
+ ++ G +L +IK + +N +
Sbjct: 506 RPISHSVKSRTGELLEVIKAAKENGKD 532
>gi|336467546|gb|EGO55710.1| hypothetical protein NEUTE1DRAFT_86290 [Neurospora tetrasperma FGSC
2508]
gi|350287803|gb|EGZ69039.1| hypothetical protein NEUTE2DRAFT_115146 [Neurospora tetrasperma
FGSC 2509]
Length = 825
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 13/316 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+V+DTL+ L EVF DP KV+HGA D++WLQRD G+Y+ +FDT
Sbjct: 271 ISTREKDWVIDTLQPWRHKLEVLNEVFADPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A VL SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+D
Sbjct: 331 YHACAVLGYPGRSLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------SYLHIYGLQ 172
++ +L + L +V +RS DV Q YE LS N + ++
Sbjct: 391 MIINELVERSTPGKPKPDLLEQVLERSKDVALQRYEN--LSYNVETGQGPRGWYNVLLKS 448
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
N +Q AV + +WRD +AR +DES + + + L +IA+ LPT L +L S
Sbjct: 449 PTLYNGEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSN 508
Query: 233 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV 292
++ ++ + +I+ + + N + K E +A + ++ D S IP+V
Sbjct: 509 AKGLKSHLDDLFDVIQKAKEEGVNGPKMMDIFKSESFVLAPAKIAAVIADDSD---IPDV 565
Query: 293 GRESVDGVDALVGTTM 308
D G T+
Sbjct: 566 KELKADRSQFWGGVTL 581
>gi|449310638|gb|AGE92546.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 149/254 (58%), Gaps = 4/254 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N FDT
Sbjct: 276 ISTREEDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+YD
Sbjct: 335 GVALQTLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L VYK S + QLYEK +++ E +Y G +GLN
Sbjct: 394 RLKALLLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPQVVPEETYKIALGRSLSGLNKV 452
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
Q V + WRD AR D+S VL +++ IA +LP TA +L R + +
Sbjct: 453 QEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDN 512
Query: 240 MGPVLSIIKNSMQN 253
+ ++ +K+++ N
Sbjct: 513 VALLVDFVKDAVAN 526
>gi|388579133|gb|EIM19461.1| hypothetical protein WALSEDRAFT_61456 [Wallemia sebi CBS 633.66]
Length = 789
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 11/263 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S+R EDF++DTL+LR Q+ L + F +P KV HGAD DIVWLQRDFG+Y+ NMFDT
Sbjct: 246 ISIRGEDFIIDTLELRDQLIK-LNDTFTNPAIVKVFHGADSDIVWLQRDFGVYIVNMFDT 304
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++VL ++SL LL FCG +K YQ ADWR RPL ++ML YAR DTHYLLYIYD
Sbjct: 305 YHATKVLGFSQHSLASLLIKFCGYTPDKRYQRADWRKRPLTNKMLEYARSDTHYLLYIYD 364
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ L + K S+ +D L +V +RS V + + ++ ++ G +
Sbjct: 365 MLRNTL--IEKSSKKNDM-LKDVLQRSEQVSLKTHHRDPYDYDTGKGFGGWYNLATKWNK 421
Query: 181 ------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-H 233
L V L +WRD IAR +DES + N L ++A + P T ++ + + K
Sbjct: 422 VVEPPLLEVFRRLHQWRDQIARKEDESVHVIFSNHQLYDLALKQPKTPQEITNVFQKKVP 481
Query: 234 SYIERYMGPVLSIIKNSMQNAAN 256
++ ++ V I + ++ A N
Sbjct: 482 QFVRIHLKDVAQCINSGVEFAKN 504
>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 808
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 147/262 (56%), Gaps = 6/262 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +FDT
Sbjct: 266 ISTREKDWIVDTLKPWRQQLQVLNEVFADPCIIKVFHGAYMDIVWLQRDLGLYVVGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A R L L SL +LL + +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYI+D
Sbjct: 326 HYACRRLGLAGGSLAFLLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
++ +L P+ V ++S + YE+++ + S + + A
Sbjct: 386 NLRNELIDASNTETPETNPMETVLEKSKETSLLRYERQVYNAESGKGPGGWFSLIYKTPA 445
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+++Q AV + WRD IAR DD+S +V+ N +I +AK +P L +++
Sbjct: 446 LLSSEQFAVFKAVHAWRDQIARKDDDSINFVMSNSVVINLAKFMPMDMIALLSIIRPISY 505
Query: 235 YIERYMGPVLSIIKNSMQNAAN 256
++ +L IIK + +N +
Sbjct: 506 SVKSRTQELLEIIKAAKENGKD 527
>gi|340966615|gb|EGS22122.1| exosome complex exonuclease rrp6-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 859
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 143/256 (55%), Gaps = 6/256 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 272 ISTREKDWIVDTLVPWRHKLEILNEVFADPKIVKVLHGAFMDIIWLQRDLGLYIVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS VL SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYIYD
Sbjct: 332 YYASDVLGYPGKSLAYLLKRFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE------KELLSENSYLHIYGLQGA 174
++ +L+ + + P+ V KRS + Q YE + + + + A
Sbjct: 392 HLRNELAELSAANHPDGKPIDRVIKRSKEESLQRYEHLTCDPETGIGARGWFNTLCKSPA 451
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
N +Q AV + +WRD +AR +DES Y + + L +IA+ LP+ L LL
Sbjct: 452 AYNREQFAVYKAVHKWRDDLARREDESPQYFMTQQILADIARILPSDKKALWSLLNHNAG 511
Query: 235 YIERYMGPVLSIIKNS 250
++ Y+ + +I+ +
Sbjct: 512 VLKPYLDELFDLIQEA 527
>gi|449304144|gb|EMD00152.1| hypothetical protein BAUCODRAFT_366269 [Baudoinia compniacensis
UAMH 10762]
Length = 774
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 10/234 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF +P+ KV+HGA D++WLQRD G+YL +FDT
Sbjct: 250 ISTRNKDWIVDTLKPWRRKLSCLNEVFANPSILKVLHGAYMDVIWLQRDLGLYLVGLFDT 309
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A R L SL +LL F V+A K+YQ ADWR+RPLP E+L YAR DTHYLLYI+D
Sbjct: 310 HYACRALGYAGASLAFLLKKFANVDAQKQYQTADWRIRPLPQELLDYARSDTHYLLYIFD 369
Query: 121 IMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN------SYLHIYGL 171
M+ ++ S+ K D L +V ++S + Q YE + + + +
Sbjct: 370 NMRNELVQRSTFGKMDHEGDK-LWDVLQKSSETALQRYEHPVYDFDLGQGTVGWYKLLAR 428
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
A L+ +Q +V + WRD +AR D+S Y++ N + IAK +PTT A+L
Sbjct: 429 TSATLSKEQFSVFRAVHRWRDNVAREQDDSAHYIMSNHHIFSIAKSMPTTKAEL 482
>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
Length = 1069
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 136/233 (58%), Gaps = 14/233 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 473 ISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDT 532
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 533 FHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFD 592
Query: 121 IMKIKLSSMPKESENSDT--------PLTEVYKRSYDVCRQLYEKELL------SENSYL 166
++ +L +P SE ++ + V +RS + Q YE+ +
Sbjct: 593 RLRNQLLELPPSSEEKESGPGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGWH 652
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ L +Q AV L EWRD IARADDES VL R L +A+++P
Sbjct: 653 DMLSNSPVALTREQFAVFRALHEWRDRIARADDESPQTVLSKRALFRLAQEMP 705
>gi|154336623|ref|XP_001564547.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 735
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 148/254 (58%), Gaps = 4/254 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VD L+LR +G L VF +P KV+HGA DI WLQ+DF +YL N FDT
Sbjct: 276 ISTREEDFIVDCLQLRSLMGT-LAPVFLNPLILKVLHGAREDIRWLQKDFSLYLVNFFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + SL + + HFC V NK++Q ADWRVRPL EM+ YAR+DTH+LLY+YD
Sbjct: 335 GVALQTLHMP-YSLAFAVDHFCQVKLNKKFQTADWRVRPLSAEMVHYARQDTHFLLYVYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L VYK S + QLYEK ++ E +Y G +GLN
Sbjct: 394 RLKALLLNSEGRAIVGNL-LVHVYKESKQLSLQLYEKPHVVPEETYKIALGRSLSGLNKV 452
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
Q V + WRD AR D+S VL +++ IA +LP TA +L R + +
Sbjct: 453 QEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLAIASKLPATAKELLRCCAPPTAVVRDN 512
Query: 240 MGPVLSIIKNSMQN 253
+ ++ +K+++ N
Sbjct: 513 VALLVDFVKDAVAN 526
>gi|346973710|gb|EGY17162.1| hypothetical protein VDAG_00844 [Verticillium dahliae VdLs.17]
Length = 804
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 140/254 (55%), Gaps = 6/254 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP KV HGA D+ WLQRD G+Y+ +FDT
Sbjct: 260 ISTRDQDWIVDTLKPWRHQLEVLNEVFTDPKIVKVFHGAHMDMQWLQRDLGLYINGLFDT 319
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ +L + SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+D
Sbjct: 320 FFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFD 379
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA------ 174
++ +L S+ + +V ++S ++ YE + G G
Sbjct: 380 RIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNPM 439
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+ +Q A + +WRD AR DESTGYVLPN + EIA+ +P A L L+
Sbjct: 440 PLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHGNSI 499
Query: 235 YIERYMGPVLSIIK 248
+R +G + + K
Sbjct: 500 IAKRNVGEIWAAFK 513
>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
Length = 868
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 8/247 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++D + ++G L E F +P KV HG+D D++WLQRDFG+++ N+FDT
Sbjct: 314 ISTRDEDFIIDPFPMWDRIG-ILNEPFTNPNILKVFHGSDNDVLWLQRDFGVHVVNLFDT 372
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD
Sbjct: 373 YVAMKKLKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYD 432
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ +L + L VY S D+C ++Y+K + + Y+ + LN +Q
Sbjct: 433 MLREQL------LQQGHKDLENVYAESNDLCIRVYKKPVFNPKGYMTEIKFRFT-LNNRQ 485
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ L WRD++ARA+DES +VLPN L+ +A+ LP + ++++
Sbjct: 486 DFALTSLYRWRDIVARAEDESPQFVLPNHMLLSLAETLPRDVGGIYVCCNPLPYFVKQRT 545
Query: 241 GPVLSII 247
G +L I+
Sbjct: 546 GDILKIM 552
>gi|17531757|ref|NP_496283.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|3874231|emb|CAA90108.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
Length = 876
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N+FDT
Sbjct: 321 ISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLFDT 379
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD
Sbjct: 380 YVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYD 439
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ +L + +++++ L VY S D+C ++Y+K + + YL + LN +Q
Sbjct: 440 MLREQL--LKQDTKD----LANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQ 492
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ L +WRDV+ARA+DES +VLPN ++ +++ LP + ++++
Sbjct: 493 DYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRT 552
Query: 241 GPVLSII 247
G +L II
Sbjct: 553 GDILKII 559
>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
Length = 824
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 144/264 (54%), Gaps = 9/264 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 286 ISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDT 345
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 346 FHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFD 405
Query: 121 IMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 171
++ +L +P ES + V +RS + Q YE+ + +
Sbjct: 406 RLRNQLLDLPSESGFGAGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGWHDMLSN 465
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 231
L +Q AV L EWRD ARADDES VL R L +A+++P + R+
Sbjct: 466 SPVALTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSP 525
Query: 232 KHSYIERYMGPVLSIIKNSMQNAA 255
+ + V +I+ + Q
Sbjct: 526 VSASLRSRTDEVAGLIREARQQGG 549
>gi|336369802|gb|EGN98143.1| hypothetical protein SERLA73DRAFT_91376 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382569|gb|EGO23719.1| hypothetical protein SERLADRAFT_450051 [Serpula lacrymans var.
lacrymans S7.9]
Length = 879
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 35/327 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VDTL LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 287 ISTRDEDFIVDTLALREELSE-LNEVFTDPRIVKVFHGAESDIVWLQQDFNLYIVNLFDT 345
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + ++ L LL +C +K+YQ ADWR+RPLPDEML YAR DTHYLL+IYD
Sbjct: 346 FHASKAIGFPKHGLASLLEMYCDFTPDKQYQLADWRMRPLPDEMLAYARSDTHYLLFIYD 405
Query: 121 IMKIKLSSMPK------ESENSDTP--------LTEVYKRSYDVCRQLYEKELLSENSYL 166
++ L + + ++E+S P + +V RS + ++YE+EL
Sbjct: 406 NLRNALIDLAQSRAQSSQNESSSGPAADPAHALIRQVLFRSEETALRVYERELYDAEDGS 465
Query: 167 HIYGLQGAGLNAQQLAVVA------------GLCEWRDVIARADDESTGYVLPNRTLIEI 214
G G + ++A + WRD ++R +DEST YVLPN L ++
Sbjct: 466 GPGGWDGLARKWNKGTLMASARGSVRQEVYRSVHAWRDRVSREEDESTRYVLPNHYLFQL 525
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ--NAANFEVIAQKLKEERMEVA 272
A+Q P+ L + I R +L +++++ +N +I E+ E
Sbjct: 526 AEQPPSDMPALLAFFQHVPPVIRRRAKELLDSVRDAVARYGGSNATLI------EKTESI 579
Query: 273 SEETEVLVLDTSSNLKIPNVGRESVDG 299
+ + ++ D S + +G+ +V+
Sbjct: 580 TISEDTVITDLPSPNIVDQIGKPAVEA 606
>gi|449548764|gb|EMD39730.1| hypothetical protein CERSUDRAFT_112032 [Ceriporiopsis subvermispora
B]
Length = 850
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 169/325 (52%), Gaps = 48/325 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R DF+VD L++R ++ L EV DP KV+HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 283 ISTRERDFIVDVLQVREEM-EELNEVLTDPRIVKVLHGAESDIVWLQQDFNLYVVNLFDT 341
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL+ R++L LL +C +K YQ ADWR+RPLP+EML+YAR DTH+LLYIYD
Sbjct: 342 YHASKVLEFPRHNLGTLLEMYCDFTPDKRYQLADWRIRPLPEEMLQYARSDTHFLLYIYD 401
Query: 121 IMKIKL--------------SSMPKESENSDTP-----LTEVYKRSYDVCRQLYEKELLS 161
++ L +S P +DT + EV RS ++YEKE
Sbjct: 402 NLRNALLDRAQSRAQSPSASASTPPSPAGADTDPAHALVREVLARSATTALRVYEKERYD 461
Query: 162 ENSYLHIYG-----------------LQGA--GLNAQQLAVVAGLCEWRDVIARADDEST 202
+ L G + GA + Q AV + WRD ++RA+DEST
Sbjct: 462 PDQGLGPGGWDTLARKWNKGALVAPPVHGADSAVARTQRAVYRAVHAWRDRVSRAEDEST 521
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN--FEVI 260
YVLPN L +A++ P A L L + + R +L ++ +++ A EV
Sbjct: 522 RYVLPNHALFALAERTPADMAALLALFRPVPPVVRRRAQELLDTVRAAVKEALGGPVEVP 581
Query: 261 AQKLKEE-------RMEVASEETEV 278
A ++ E R EV +E EV
Sbjct: 582 ATEVVETEKVDSDVREEVDTEAVEV 606
>gi|63054485|ref|NP_593004.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|6226742|sp|Q10146.2|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|159883898|emb|CAA93168.2| exosome 3'-5' exoribonuclease subunit Rrp6 (predicted)
[Schizosaccharomyces pombe]
Length = 777
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 152/261 (58%), Gaps = 21/261 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+FDT
Sbjct: 261 ISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDT 319
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++VL E + L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI+D
Sbjct: 320 YYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWD 379
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ +L S K +E + + V+ S + + YE E Y IYGL G
Sbjct: 380 HLRNELIS--KSAERKENLMQSVFNSSKQISLRKYELE-----PYDPIYGLGTDGWRNVL 432
Query: 176 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + L + L +WRD +AR +DES YVLPNR LI IA P AA +
Sbjct: 433 TKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFS 492
Query: 228 LLKSKHSYIERYMGPVLSIIK 248
+ K Y+ ++ +++
Sbjct: 493 ISKQLTPIARMYVEDIVKVVQ 513
>gi|367031894|ref|XP_003665230.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
gi|347012501|gb|AEO59985.1| hypothetical protein MYCTH_2308740 [Myceliophthora thermophila ATCC
42464]
Length = 860
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 151/272 (55%), Gaps = 6/272 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL L EVF DP KV+HGA D++WLQRD G+Y+ +FDT
Sbjct: 270 ISTREKDWIVDTLVPWRHKLEVLNEVFADPKIVKVLHGAFMDVIWLQRDLGLYIVGLFDT 329
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L SL +LL F +A+K+YQ ADWR+RPLP+EM YAR DTH+LLYIYD
Sbjct: 330 FYASDTLGYAGKSLAFLLKKFADFDADKKYQLADWRIRPLPEEMFYYARSDTHFLLYIYD 389
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL---- 176
+++ +L+ + ++ P+ V ++S +V Q YE + + G +
Sbjct: 390 MLRNELAELASQNNPDGNPIDRVIQKSKEVSLQRYEHPVCDPETGAGNRGWYNTLIKSPT 449
Query: 177 --NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
N +Q AV + +WRD +AR +DES +++ + L +IA+ +PT L LL+S
Sbjct: 450 LYNGEQFAVYKAVHKWRDDVARQEDESPFFIMTQQVLSDIARIIPTDMKALWSLLESNAR 509
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKE 266
++ + + +I+ + N + Q +E
Sbjct: 510 GLKGRLEELFQVIQEARARGVNGPTMLQFFRE 541
>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
Length = 894
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 141/254 (55%), Gaps = 6/254 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF +P KV HGA D+ WLQRD G+Y+ +FDT
Sbjct: 311 ISTRDQDWIVDTLKPWRHQLEVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLFDT 370
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ +L + SL YLL F +A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+D
Sbjct: 371 FFAAEILGYPQRSLAYLLKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFD 430
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA------ 174
++ +L S+ + +V ++S ++ YE + G G
Sbjct: 431 RIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNPM 490
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+ +Q A + +WRD AR DESTGYVLPN + EIA+ +P A L L+ S
Sbjct: 491 PLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHSNSI 550
Query: 235 YIERYMGPVLSIIK 248
+R +G + + K
Sbjct: 551 IAKRNVGEIWAAFK 564
>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
Length = 882
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 141/245 (57%), Gaps = 9/245 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP+ KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 264 ISTREKDWIVDTLKPWREQLQVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVNGLFDT 323
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A VL + SL +LL F +A+K+YQ ADWRVRPL +EML YAR DTHYLLYIYD
Sbjct: 324 GMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYD 383
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGLQG 173
M+ +L M + N T E ++S + Y E + + +
Sbjct: 384 KMRNELV-MKSDRGNPSTDYIEATLQKSKTLSLSRYGGETFDPKTGKGNKGWYNTLLRHP 442
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ QQ AV + WRD +AR +DEST +V+PN + +IAK +P A L L+ + H
Sbjct: 443 MPFSGQQFAVYRAIWAWRDEVARREDESTPFVMPNAIIGDIAKHMPPDAKALHALIPN-H 501
Query: 234 SYIER 238
++I R
Sbjct: 502 AFIAR 506
>gi|393243266|gb|EJD50781.1| hypothetical protein AURDEDRAFT_159928 [Auricularia delicata
TFB-10046 SS5]
Length = 837
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 10/259 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R ED+VVD L +R +V P L EVF D KV HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 297 ISTREEDWVVDLLAVREEV-PKLAEVFADENIVKVFHGAESDIVWLQQDFSLYIVNLFDT 355
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL+ ++SL LL + +K YQ ADWR+RP+P EML YAR DTH+LL+IYD
Sbjct: 356 YHASKVLEFPKHSLASLLEAYTDFTPDKRYQLADWRIRPIPAEMLLYARSDTHFLLHIYD 415
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGA 174
K++ + + S +D + EV +RS + + Y E N + +
Sbjct: 416 --KLRELLLQRSSGTADL-IREVLRRSEETALRTYVLETYDTQRGSGANGWEILAKKWNK 472
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
GL+ LAV + EWRD +AR DEST YV+ N +L ++A PT A+L L +
Sbjct: 473 GLHGLPLAVYKAVHEWRDTVARTTDESTRYVMGNSSLFKLADAQPTDMAQLTAALHPMSA 532
Query: 235 YIERYMGPVLSIIKNSMQN 253
+ + +L++I ++++
Sbjct: 533 IVRKRGKDLLNVISRAVKD 551
>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
Length = 669
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 150/255 (58%), Gaps = 8/255 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D+++D L Q+G L VF +P KV HGAD D+ WLQRDFG+Y+ N+FDT
Sbjct: 241 LSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKVFHGADNDVQWLQRDFGLYIVNLFDT 300
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QAS+ L L +NS ++LL +C + +K YQ ADW RPL DEM++YA+ DTHYLLYIYD
Sbjct: 301 FQASKELLLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLSDEMIKYAQIDTHYLLYIYD 360
Query: 121 IMKIKLSSMPKESEN-SDTP---LTEVYKRSYDVCRQLYEKELLSENSYLH-IYGLQGAG 175
M+ L + K +EN ++ P + V KRS D ++Y+K L ++ L I Q
Sbjct: 361 RMRQDLKKLNKPNENLNNVPNYYIESVLKRSKDTALKIYKKPLQDQDQSLQTILNKQDRR 420
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL---KSK 232
+ A+ ++ L E R+ + D++ Y LPN L ++ + PT+ +L+ L K
Sbjct: 421 MEAKNFDLMVKLLELREELGIQYDQNPRYFLPNPFLFKLVESKPTSIQELKSQLGGDKYI 480
Query: 233 HSYIERYMGPVLSII 247
H I+ + L I+
Sbjct: 481 HEIIKENLWQFLKIL 495
>gi|336273270|ref|XP_003351390.1| hypothetical protein SMAC_03697 [Sordaria macrospora k-hell]
gi|380092911|emb|CCC09664.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 821
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 162/314 (51%), Gaps = 9/314 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+V+DTL+ L EVF DP KV+HGA D +WLQRD G+YL +FDT
Sbjct: 271 ISTREKDWVIDTLQPWRHKLEVLNEVFADPKIVKVLHGAFMDAIWLQRDLGLYLVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A VL SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYIYD
Sbjct: 331 YHACAVLGYPGRSLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL---- 176
++ +L + L +V +RS DV Q YE + + + G L
Sbjct: 391 MLVNELIERSTPGKPKPDLLEQVLERSKDVALQRYENPSYNVETGMGPRGWYNVLLKSPT 450
Query: 177 --NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
N++Q AV + +WRD +AR +DES + + + L +IA+ LPT L +L S
Sbjct: 451 LYNSEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAK 510
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGR 294
++ ++ + +I+ + + + + K + +A + ++ D S IP+V
Sbjct: 511 GLKSHLDHLFDVIQKAREEGVDGPKMMDIFKSDSSIIAPSKRAAVISDDSD---IPDVKE 567
Query: 295 ESVDGVDALVGTTM 308
D G T+
Sbjct: 568 LKADRSQFWGGVTL 581
>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 881
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VD + + L V D KV+HGAD DI WLQRDFGIY+ N+FDT
Sbjct: 287 ISSRTKDYIVDVFSVWKSLHK-LNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDT 345
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R L + +L YLL V +K+YQ ADWR+RPLP EM+ YAR DTHYLL IYD
Sbjct: 346 GQAARTLSMPSYALAYLLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYD 405
Query: 121 IMKIKLSSMP-KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++I+L S ++ +N+ + V +S +C + Y K +L + Y I Q L+ +
Sbjct: 406 NLRIQLVSKALQQGQNASHFIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILSDR 465
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
+ ++ L EWR +A DE+ +VL N L I +LP T + K SY+ +Y
Sbjct: 466 KFRILKRLLEWRYKMAAKYDENPTFVLANDILFNIVNRLPQTQKEFAS-SNLKLSYVCQY 524
Query: 240 MG-PVLSIIKNSMQ 252
+LSIIK ++
Sbjct: 525 HANEILSIIKEEIE 538
>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
Length = 676
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 152/255 (59%), Gaps = 8/255 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R++D+++D L Q+G L +F +P KV HGA+ D+ WLQRDFG+Y+ N+FDT
Sbjct: 241 LSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDT 300
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L+L +NS ++LL +C + +K YQ ADW RPLPDEM++YA+ DTHYLLYIYD
Sbjct: 301 FHASKELQLMQNSFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYD 360
Query: 121 IMKIKLSSMPKESEN-SDTP---LTEVYKRSYDVCRQLYEKELLSENSYLH-IYGLQGAG 175
M+ L + K ++N S+ P L V KRS + ++Y+K L ++ L I Q
Sbjct: 361 RMRQDLKKLNKPNDNISNIPNYYLEAVLKRSKETALKIYKKPLQDQDQSLQTILNKQDRR 420
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL---KSK 232
+ A+ ++ L E R+ + D++ Y LPN L +I + PTT +L+ L K+
Sbjct: 421 MEAKSFELMVRLLELREELGIKHDQNPRYFLPNPFLFKIVESKPTTIQELKSQLGGDKNI 480
Query: 233 HSYIERYMGPVLSII 247
H ++ + L ++
Sbjct: 481 HEVVKDNLWQFLKVL 495
>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
[Neurospora crassa]
Length = 822
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 163/316 (51%), Gaps = 13/316 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+V+DTL+ L EVF +P KV+HGA D++WLQRD G+Y+ +FDT
Sbjct: 271 ISTREKDWVIDTLQPWRHKLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A VL SL YLL F A+K+YQ ADWR+RPLP+EM YAR DTHYLLYI+D
Sbjct: 331 YHACAVLGYPGRSLGYLLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN--------SYLHIYGLQ 172
++ +L + L +V +RS DV Q YE LS N + ++
Sbjct: 391 MIINELVERSTPGKPKPDLLEQVLERSKDVALQRYEN--LSYNVETGQGPRGWYNVLLKS 448
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
N +Q AV + +WRD +AR +DES + + + L +IA+ LPT L +L S
Sbjct: 449 PTLYNGEQFAVYKAVHQWRDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSN 508
Query: 233 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV 292
++ ++ + +I+ + + N + K E +A + ++ D S IP+V
Sbjct: 509 AKGLKSHLDDLFDVIQKAREEGVNGPKMMDIFKSESSILAPAKIAAVIADDSD---IPDV 565
Query: 293 GRESVDGVDALVGTTM 308
D G T+
Sbjct: 566 KELKADRSQFWGGVTL 581
>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
Length = 882
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 153/302 (50%), Gaps = 58/302 (19%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R ED+VVDTL +R ++ L EVF D KV+HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 290 LSTREEDWVVDTLAVRDEMEA-LNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLFDT 348
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL R+SL LL +C A+K YQ ADWR+RPLP+EML YAR DTH+LLYIYD
Sbjct: 349 YHASKVLDFPRHSLATLLEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYIYD 408
Query: 121 IMKIKL-------------------------SSMPKESENSDTPLTEVYKRSYDVCRQLY 155
++ L S +P + + + V RS + ++Y
Sbjct: 409 NLRNALLDRAQSRTQSRAQSPSASAPASKPGSPLPTSGNPAHSLVRLVLSRSEETALRVY 468
Query: 156 EKELLSE---------------NSYLHIYGLQ--GAGLNAQQLAVVAGLCEWRDVIARAD 198
EKE N I Q +G A Q AV + WRD IAR +
Sbjct: 469 EKETYDAEGSGPGGWDTLARKWNKGALIASAQEPTSGPLAMQRAVYRCVHAWRDRIAREE 528
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKL---------------RRLLKSKHSYIERYMGPV 243
DEST Y+LPN L +A++ P A L R LL + ++R +GP
Sbjct: 529 DESTRYILPNHYLFILAERPPADMAALLSTFQPVPPVVRRRGRELLDAIRDAVKRTLGPE 588
Query: 244 LS 245
LS
Sbjct: 589 LS 590
>gi|327308500|ref|XP_003238941.1| exosome component 3'-5' exonuclease [Trichophyton rubrum CBS
118892]
gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
Length = 867
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 147/271 (54%), Gaps = 16/271 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 286 ISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDT 345
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 346 FHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFD 405
Query: 121 IMKIKL----SSMPKESENSDT------PLTEVYKRSYDVCRQLYEKELL------SENS 164
++ +L SS P+E + S + V +RS + Q YE+
Sbjct: 406 RLRNQLLESPSSSPEEKQESGLGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGG 465
Query: 165 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAK 224
+ + L +Q AV L EWRD ARADDES VL R L +A+++P
Sbjct: 466 WHDMLSNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFA 525
Query: 225 LRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
+ R+ + + V +I+ + Q
Sbjct: 526 VLRMGSPVSASLRSRTDEVAGLIREARQQGG 556
>gi|405119146|gb|AFR93919.1| PM-scl autoantigen [Cryptococcus neoformans var. grubii H99]
Length = 954
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 148/272 (54%), Gaps = 27/272 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+FD
Sbjct: 290 ISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFD 349
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IY
Sbjct: 350 TYSACVVLEMPQRSLSALLQHYCSFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIY 409
Query: 120 DIMKIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSENS 164
D ++ L SS P T + EV +RS D ++YE++ +
Sbjct: 410 DNLRNALLHKSSRPSSPATCGTIVLDSARPNPQEAMREVLERSADTALKMYERDSYDIET 469
Query: 165 YLHIYGLQGAG--------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
G AG + + V L +WRD +AR DES YV+PN L +++
Sbjct: 470 GRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDVST 529
Query: 217 QLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 247
A L R+++ + I +Y+ + SII
Sbjct: 530 A--DNTANLSRIIRRDRAPIAAQYIPEITSII 559
>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
Length = 544
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 36/296 (12%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL+L + P L +VF DP K+ GAD D++WLQRDFGIY+ N+FDT QA+ +
Sbjct: 146 DYIIDTLQLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDTLQAASL 204
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L ++ L +LL H+C V+ NK+YQ ADWR+RPLP EM++YAREDTHYL+YIY+ MK L
Sbjct: 205 LGFQKKGLYFLLQHYCQVHVNKKYQLADWRIRPLPQEMVKYAREDTHYLIYIYERMKQDL 264
Query: 127 SS----------------MPKESENSD--------TPLTE--------VYKRSYDVCRQL 154
S P+E ++ TP+ E V+ S VC +
Sbjct: 265 YSRHCLGDVKITPEMKKGTPEEPKDRKSKSKSSQITPVNEKGVNQVLQVWNNSRSVCLKQ 324
Query: 155 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
Y + L E + + +G N QQ + + WRD +AR DES YV+ ++
Sbjct: 325 YRIQTLEEMYSKFYSSLNKEGKKFNNQQSYALQEIFSWRDRVARELDESPHYVMTKFNML 384
Query: 213 EIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEER 268
I QL + + + S+H ++ +++ + +I + A I++K ++R
Sbjct: 385 NIISQLHNQPENILQPI-SRHRFVHQHLPQLHEVIVKAKAIAIQSSPISKKQTKKR 439
>gi|407923871|gb|EKG16934.1| hypothetical protein MPH_05915 [Macrophomina phaseolina MS6]
Length = 817
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 143/272 (52%), Gaps = 10/272 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HGA D +WLQRD G+YL +FDT
Sbjct: 262 ISTRNKDWIVDTLKPWRRRLQALNEVFTDPHILKVLHGAYMDAIWLQRDLGLYLVGLFDT 321
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL +LL F NA K+YQ ADWR+RPLP E+ YAR DTH+LLYIYD
Sbjct: 322 HHAARALGYSGGSLAFLLQKFIHFNAQKQYQTADWRMRPLPQELFDYARSDTHFLLYIYD 381
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA------ 174
M+ +L + + V ++S + Q YE + G A
Sbjct: 382 NMRNELVDKSSFDDPEQDRVLRVLEKSKETALQTYENPIYDAKEGSGPMGWYKALYRNPN 441
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
N +Q +V + +WRD +AR +DEST YV+ N L +A+ +P A L + +
Sbjct: 442 AFNKEQFSVFKAVHQWRDTVARQEDESTHYVMANHALFSVARSIPLDKAALFNVAQPISP 501
Query: 235 YIERYMGPVLSIIKNSMQNAAN----FEVIAQ 262
+ ++ II + + A+ +EV A+
Sbjct: 502 IVRLRADELVGIITRAKEAGADGPEMWEVFAK 533
>gi|406862035|gb|EKD15087.1| putative exosome complex exonuclease Rrp6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 804
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 149/266 (56%), Gaps = 14/266 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK Q L EVF DP KV HGA DIVWLQRD G+Y+ +FDT
Sbjct: 286 ISTREKDWIVDTLKPWRQNLQVLNEVFADPKIIKVFHGAFMDIVWLQRDLGLYVVGLFDT 345
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L SL +LL F +A+K+YQ ADWR+RPLP EM YAR DTH+LLYI+D
Sbjct: 346 HHASRALGYSGASLAFLLKKFIDFDADKQYQMADWRIRPLPAEMFFYARADTHFLLYIFD 405
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL----YEKELLSENS------YLHIYG 170
+++ +L + NS+ P + + C++ +E+++ + +S +
Sbjct: 406 MVRNELI----DRSNSEVPDENRLEITLQKCKETSLLRFERQVYNTDSGKGPGGWFSQLN 461
Query: 171 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 230
+ L+ +Q AV + WRD IAR DD+S +VLP ++ +AK +P + L+K
Sbjct: 462 KTPSLLSNEQFAVFRAVHGWRDKIARIDDDSPTFVLPQHAVLTLAKLMPMDMVGVLGLIK 521
Query: 231 SKHSYIERYMGPVLSIIKNSMQNAAN 256
S ++ +L +IK++ N
Sbjct: 522 SGSHSVKSRAAELLDVIKSAKAQGKN 547
>gi|426195548|gb|EKV45477.1| hypothetical protein AGABI2DRAFT_186278 [Agaricus bisporus var.
bisporus H97]
Length = 870
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 153/285 (53%), Gaps = 34/285 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDFVVD + LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 305 ISTREEDFVVDVIALRDEM-EVLNEVFTDPKIVKVFHGAESDIVWLQQDFNLYVVNLFDT 363
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS++L+ R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH+LL+IYD
Sbjct: 364 YHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDTHFLLFIYD 423
Query: 121 IMKIKL-------SSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL- 171
++ L S P S+N + V RS + C ++Y KE+ +S G
Sbjct: 424 NLRNALLDRGGPASRSPHASKNPLHASINHVLTRSSETCLRVYVKEVYDRSSGTGSNGWD 483
Query: 172 -----------------------QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+G + Q AV + WR+ ++R +DEST YVLPN
Sbjct: 484 TLARKWNKPLFTALSFSYQSSSDEGHSVPEMQKAVYRAVHWWRESVSREEDESTRYVLPN 543
Query: 209 RTLIEIAKQLPTTAAKLRRLLKSK-HSYIERYMGPVLSIIKNSMQ 252
+ L IA+ P L RL S ++R +L +++++++
Sbjct: 544 QYLFRIAEAPPGDLGNLLRLFGSSVPVVVKRRAKELLDVVRDAVK 588
>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
Length = 891
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 136/238 (57%), Gaps = 22/238 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S +DF+VDT+ L LR VF +P KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 161 ISTHEKDFLVDTIVLH-DAMSILRPVFSEPNICKVFHGADNDVLWLQRDFHIYVVNMFDT 219
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 220 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD 279
Query: 121 IMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYL 166
+ +L + +E+S +P L E +RS C QLY KE S Y
Sbjct: 280 SLTAELKQLA--TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAAASSIIYR 337
Query: 167 HIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
H+ G LNA++L V LC WRD++ R DEST YVL ++ ++ +A + PTT
Sbjct: 338 HLNGHGDKSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLACKQPTT 393
>gi|395329712|gb|EJF62098.1| hypothetical protein DICSQDRAFT_59413 [Dichomitus squalens LYAD-421
SS1]
Length = 861
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 166/328 (50%), Gaps = 51/328 (15%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDFVVDTL LR ++ L EVF DP KV+HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 279 ISTRDEDFVVDTLALREELE-ELNEVFTDPNIVKVLHGAESDIVWLQQDFNLYIVNLFDT 337
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL R+ L LL +C A+K YQ ADWR+RPLP EML+YAR DTH+LL+IYD
Sbjct: 338 YHASKVLDFPRHGLASLLEMYCDFTADKRYQLADWRIRPLPKEMLQYARSDTHFLLFIYD 397
Query: 121 IMKIKLSSMPKESENS---------------------DTPLTEVYKRSYDVCRQLYEKEL 159
++ L + S + EV RS + ++YEKE+
Sbjct: 398 NLRNALLDRAQSRAQSRAQSPSSPTSTPPPDPSIPPAHVLVREVLSRSEETALRVYEKEI 457
Query: 160 LSE----------------NSYLHIYGL----QGAGLNAQQLAVVAGLCEWRDVIARADD 199
N L I + GA +N Q+ AV + WRD IAR +D
Sbjct: 458 YDAEFGLGPGGWDTMARKWNKTLLIGSMAETNTGAAVNVQR-AVYRAVHAWRDKIAREED 516
Query: 200 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA---- 255
EST YVLPN + +A++ P A L + S I R +L I+++++ A
Sbjct: 517 ESTRYVLPNHYIFSLAERTPADMAALLSVFHPVPSVIRRRAKELLDAIRDAVKGALGSGS 576
Query: 256 ----NFEVIAQKLKEERMEVASEETEVL 279
EV A EE M V T V+
Sbjct: 577 TTERGAEVTASVEGEEIMSVDDPLTTVV 604
>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Komagataella pastoris
GS115]
gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Komagataella pastoris CBS 7435]
Length = 717
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 152/273 (55%), Gaps = 32/273 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLKLR ++ P L +VF DP+ KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 255 ISTRNQDYIVDTLKLRFKLQP-LNKVFTDPSIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 313
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS++L ++SL YLL + +K+YQ ADWRVRPL +L YAR DTH+LLYI+D
Sbjct: 314 FHASKLLGFPKHSLAYLLETYAKFKTSKKYQLADWRVRPLTKPLLAYARSDTHFLLYIFD 373
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN----------------- 163
+L++M ES L++V S V + +E N
Sbjct: 374 ----QLNNMLIESGK----LSQVLYDSRQVALRRFEYTKFRPNFPTPLVVSPLNDRKEPW 425
Query: 164 -SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
L++Y + + + V L WRD IAR DDEST YVLPN+ L I PT
Sbjct: 426 KQLLYLYNIPRS-----RQPVFIALYNWRDEIAREDDESTRYVLPNQLLATITSISPTDV 480
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
+ L + Y+++Y ++ IIK++++ A
Sbjct: 481 SSLMSCSNIRTPYLKKYATELVEIIKSTLKEGA 513
>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1016
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 150/277 (54%), Gaps = 37/277 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+FD
Sbjct: 352 ISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFD 411
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IY
Sbjct: 412 TYSACVVLEMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIY 471
Query: 120 DIMKIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSENS 164
D ++ L SS P N T + EV +S D ++YE+ +S
Sbjct: 472 DNLRNALLHKSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYER-----DS 526
Query: 165 YLHIYGLQGAGLNA-------------QQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
Y + G G A + V L +WRD +AR DES Y++PN L
Sbjct: 527 YDIVTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNML 586
Query: 212 IEIAKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 247
+++ T A L R+++ + I +Y+ + SII
Sbjct: 587 RDVSTADNT--ANLSRIIRRDRAPIAAQYIPEITSII 621
>gi|296815198|ref|XP_002847936.1| exosome component 3'-5' exonuclease [Arthroderma otae CBS 113480]
gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
113480]
Length = 810
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 150/267 (56%), Gaps = 21/267 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 289 ISTREQDWIVDTLKPWRDQLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDT 348
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ +L+L + SL++LL + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 349 FHAASMLQLPKKSLKFLLQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFD 408
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ +L E+ D + V +RS + Q YE+ +Y + G G
Sbjct: 409 RLRNELI----EASGRDA-IEYVLERSKECALQRYERP-----TYDSLRGRGNGGWHDML 458
Query: 176 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
L +Q AV L EWRD AR DDEST VL R+L IA+++P + +L
Sbjct: 459 SNSPVLLTREQFAVFRALHEWRDKTARTDDESTQTVLSKRSLFRIAQEMPVDKFAVLQLA 518
Query: 230 KSKHSYIERYMGPVLSIIKNSMQNAAN 256
+ + V ++I + +N++
Sbjct: 519 SPVSASLRSRTEEVAALIAKAKKNSST 545
>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 854
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 167/315 (53%), Gaps = 31/315 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VD L LR ++ L E+F DP KV+HGA+ D+VWLQ+DF +Y+ N+FDT
Sbjct: 285 ISDRENDWIVDLLALRDEIE-QLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDT 343
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS++L R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH+LL+IYD
Sbjct: 344 FHASKLLDFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYD 403
Query: 121 IMKIKL---------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE--------- 162
++ L S + LT+V RS + ++Y KE
Sbjct: 404 NLRNALLDRSRSRSSSPSSSSQKPQHALLTQVLTRSAETSLRVYVKEPYDAADGSGPGGW 463
Query: 163 -------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
N + G G G+ A Q V + WR+ +AR +DEST Y +PN+ L ++A
Sbjct: 464 DTLAKKWNKGALMAGGPGVGIGAMQREVYVRVHGWRERVAREEDESTRYTMPNQYLFQLA 523
Query: 216 KQLPTTAAKLRRLLKSK-HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
+Q P A L + KS + + R +L +I+ ++ + +A K++EE + S
Sbjct: 524 EQPPADMAALLGVFKSSVPALVRRRAKELLEVIREGVKRGLEGKQVA-KVEEEPSKTGS- 581
Query: 275 ETEVLVLDTSSNLKI 289
EV+ D +S K+
Sbjct: 582 --EVVAPDAASKEKM 594
>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
Length = 628
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 131/238 (55%), Gaps = 12/238 (5%)
Query: 1 MSLRTEDFVVDTL---KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+S R +D++VDTL + R++V L EVF DP KV HGA D+VWLQRD G+Y+ +
Sbjct: 51 ISTREKDWIVDTLVPWRHRLEV---LNEVFADPGIVKVFHGAFMDVVWLQRDLGVYVVGL 107
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT AS VL SL +LL F G A+K +Q ADWR+RPLP EML YAR DTHYLLY
Sbjct: 108 FDTHHASTVLGYGGGSLAFLLKKFVGFEADKRWQLADWRIRPLPAEMLYYARADTHYLLY 167
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGL------ 171
+YD+++ L++ P+ V +S YE E + L G
Sbjct: 168 VYDMIRNDLAAAAHTVHPDGKPIERVIAKSKKTALSRYENPAFDEETGLGDRGWYNYLAR 227
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
N ++ AV L WRD AR +DESTG+V+ + EI + +P+ L LL
Sbjct: 228 SSYVYNKEEFAVFRALWNWRDKTAREEDESTGFVMKEHVMAEIVRVMPSDKKALWSLL 285
>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1016
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 150/277 (54%), Gaps = 37/277 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+VVDTL LR ++ +VF DPT KV HGAD DI+WLQRDF I++ N+FD
Sbjct: 352 ISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFD 411
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A VL++ + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IY
Sbjct: 412 TYSACVVLEMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIY 471
Query: 120 DIMKIKL---SSMPKESENSDT------------PLTEVYKRSYDVCRQLYEKELLSENS 164
D ++ L SS P N T + EV +S D ++YE+ +S
Sbjct: 472 DNLRNALLHKSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYER-----DS 526
Query: 165 YLHIYGLQGAGLNA-------------QQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
Y + G G A + V L +WRD +AR DES Y++PN L
Sbjct: 527 YDIVTGRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNML 586
Query: 212 IEIAKQLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 247
+++ T A L R+++ + I +Y+ + SI+
Sbjct: 587 RDVSTADNT--ANLSRIIRRDRAPIAAQYIPEITSIV 621
>gi|393212538|gb|EJC98038.1| hypothetical protein FOMMEDRAFT_149467 [Fomitiporia mediterranea
MF3/22]
Length = 845
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 150/258 (58%), Gaps = 10/258 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL LR ++ L E+F DP KV+HGAD D+VWLQ+DF IY+ N+FDT
Sbjct: 294 ISTREEDFIIDTLALREELE-ELNEIFTDPKIVKVLHGADSDVVWLQQDFNIYIVNLFDT 352
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS++L ++ L LL +C +K YQ ADWR+RPLPDEM++YAR DTH+LLYIYD
Sbjct: 353 YHASKLLDFPKHGLGALLEMYCDFVPDKRYQLADWRIRPLPDEMMKYARSDTHFLLYIYD 412
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-ENSY----LHIYGLQ-GA 174
++ +++ + + RS D ++YE E EN + L+ G
Sbjct: 413 NLR---NALLDRARGQPDLVRSALSRSEDTALRIYEPEFYDLENGTGPGGWNTLSLKWGR 469
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+ Q V WRD +AR +DEST YV+PN L ++A++ PT A L + +
Sbjct: 470 ALSGTQHTVFRAAHAWRDALARKEDESTRYVMPNHYLFQLAERPPTDMANLLSIFRPVPP 529
Query: 235 YIERYMGPVLSIIKNSMQ 252
+ +L +I+ +++
Sbjct: 530 LVRTQAASLLEVIRTAVK 547
>gi|398390487|ref|XP_003848704.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
gi|339468579|gb|EGP83680.1| hypothetical protein MYCGRDRAFT_76687 [Zymoseptoria tritici IPO323]
Length = 796
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 141/265 (53%), Gaps = 10/265 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF +PT KV+HGA D +WLQRD G+YL +FDT
Sbjct: 264 ISTRDKDWIVDTLKPWRRKLQCLNEVFANPTIVKVLHGAFMDAIWLQRDLGLYLVGLFDT 323
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A R L SL +LL F V+A K++Q ADWRVRPLP E+ YAR DTHYLLYI+D
Sbjct: 324 HYACRALGYAGGSLAFLLKKFADVDAQKQHQMADWRVRPLPKELFDYARSDTHYLLYIFD 383
Query: 121 IMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN------SYLHIYGL 171
M+ I+ S K D L +V ++S +V Q YE + +
Sbjct: 384 CMRNELIERSDFSKPDHEGDK-LWDVLQKSTEVALQRYEHPQYDAELGQGAMGWYKLLSR 442
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 231
A + +Q AV + WRD +AR D+S +V+PN + +AK +P T L + +
Sbjct: 443 TPALFSPEQFAVFKAVHHWRDRVAREQDDSIHFVMPNHQIFSLAKAMPPTRLALMGIAQP 502
Query: 232 KHSYIERYMGPVLSIIKNSMQNAAN 256
+ +LS+I + + N
Sbjct: 503 TTQTVRLRADELLSVIVRAQEAGKN 527
>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
Length = 1449
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 161/280 (57%), Gaps = 25/280 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+++D + L ++ LR VF + + KV HGAD DI+WLQRDF IY+ N+FDT
Sbjct: 803 ISTYKRDYLIDAIALHDEME-TLRPVFANASICKVFHGADSDILWLQRDFHIYVVNLFDT 861
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +C ++ NK +Q +DWR RPLP+++L YAR D H+LLYI
Sbjct: 862 ARACDVLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYARSDAHFLLYIAR 921
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG-LQGAGLNAQ 179
+ +L + E++ ++ PL +RS+ +C QLYEK+ S ++ ++ Q + L+
Sbjct: 922 KLYSEL--LQGETDLANAPLQMATRRSHLICLQLYEKDASSASAAASLFSKFQESNLDKP 979
Query: 180 QLAVVAG----LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR-------- 227
+ A + LCEWRD +AR +DES +VL + ++ IA+ LP T ++ R
Sbjct: 980 REASMRRRLRLLCEWRDAVARIEDESLRFVLSDAAIVAIARTLPRTGKEVYRSIHAADMA 1039
Query: 228 ---------LLKSKHSYIERYMGPVLSIIKNSMQNAANFE 258
LL S ++R++ ++ IK+S NA + E
Sbjct: 1040 TSTDSSKTSLLPSPSPLVKRHISSLILAIKDSAANATSGE 1079
>gi|358339908|dbj|GAA47879.1| exosome complex exonuclease RRP6, partial [Clonorchis sinensis]
Length = 1125
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 142/252 (56%), Gaps = 12/252 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D+++D L LR + L +F DP KV HG+D D++WLQRDF IY+ N+FDT
Sbjct: 639 LSTRTTDYILDALALRDHLHK-LNVIFTDPDVVKVFHGSDLDLMWLQRDFSIYVVNLFDT 697
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A+R L+L R SL +LL + V ANK+YQ ADWR+RPLPDE++ YAR DTHYLL++
Sbjct: 698 GLAARALQLGRFSLSFLLLRYANVRANKKYQLADWRIRPLPDELIEYARTDTHYLLHVSA 757
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIY-GLQGAGLNA 178
+M E D L + V + +C + Y K YL +Y G N
Sbjct: 758 VMC---------QELQDRGLLDVVLEGGRQLCLKRYTKPAFDPLGYLSLYRQAAGTSFNH 808
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
+QL + L RD IAR +DES YVLPN L IA+ LP ++ L + +
Sbjct: 809 RQLYALEQLYALRDSIARREDESVHYVLPNHMLKTIAEVLPRESSGLFACCNPIPPLVRK 868
Query: 239 YMGPVLSIIKNS 250
Y+ + II ++
Sbjct: 869 YVHDLHKIIVDA 880
>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 1297
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 144/263 (54%), Gaps = 11/263 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP K+ HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 ISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL+YLLH F A+K+YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 333 YHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
++ +L + S D + V ++S Q YE+ + + + + A
Sbjct: 393 NLRNELLT---NSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPA 449
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+++Q AV+ + EWRD +AR +DE V P L +A+ +P L R + S +
Sbjct: 450 ILSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGTLFRTM-SPMT 508
Query: 235 YIERYMGP-VLSIIKNSMQNAAN 256
I + P +L +IK + A
Sbjct: 509 PIAKDRAPDLLQVIKTAKAEGAT 531
>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
Length = 881
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 146/270 (54%), Gaps = 15/270 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 289 ISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDT 348
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 349 FHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFD 408
Query: 121 IMKIK-LSSMPKESENSDT--------PLTEVYKRSYDVCRQLYEKELL------SENSY 165
++ + L +P SE ++ + V +RS + Q YE+ +
Sbjct: 409 RLRNQLLELLPSSSEEKESGPGGGGREAIEYVLERSKECALQRYERPTYDAATGRGSGGW 468
Query: 166 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ L +Q AV L EWRD ARADDES VL R L +A+++P +
Sbjct: 469 HDMLSNSPVALTREQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAV 528
Query: 226 RRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
R+ + + V +I+ + Q
Sbjct: 529 LRMGSPVSASLRSRTDEVAGLIREARQQGG 558
>gi|453081050|gb|EMF09100.1| 3_5_exonuc-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 782
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 260 ISTRDKDWIVDTLKPWRRKLQCLNEVFADPGIIKVLHGAFMDIMWLQRDLGLYIVGLFDT 319
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ VL SL +LL F V+A K+YQ ADWRVRPLP E+ YAR DTH+LLYI+D
Sbjct: 320 FHAASVLGYTGRSLAFLLKKFANVDAQKQYQTADWRVRPLPTELFDYARSDTHFLLYIFD 379
Query: 121 IMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQ-----LYEKELLSENSYLHIYGLQ 172
M+ I S++ + D + +V +RS + Q +Y+ EL + +
Sbjct: 380 NMRNELIHRSNLELPNHEGDK-IYDVLQRSSEEALQRYEYPVYDAELGQGAGWYRLLSRT 438
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
A L +Q +V + +WRD +AR D+S Y++PN + IA+ +P
Sbjct: 439 SAMLTKEQFSVFRAVHQWRDEVAREQDDSVNYIMPNHQIFSIARAMP 485
>gi|380485396|emb|CCF39387.1| 3'-5' exonuclease [Colletotrichum higginsianum]
Length = 732
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 140/245 (57%), Gaps = 9/245 (3%)
Query: 1 MSLRTEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R +D++VDTLK R Q+ L EVF DP+ KV HGA D+VWLQRD G+Y+ +FD
Sbjct: 115 ISTREKDWIVDTLKPWRGQL-EVLNEVFADPSIVKVFHGAFMDMVWLQRDLGLYVNGLFD 173
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
TG A VL + SL +LL F +A+K+YQ ADWRVRPL +EML YAR DTHYLLYIY
Sbjct: 174 TGMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIY 233
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--- 176
D M+ +L + ++S + Y E + + G L
Sbjct: 234 DKMRNELVMKSDRGNPGSDYIEAALQKSKTLSLSRYGGETFNPKTGKGSKGWYNTLLKHP 293
Query: 177 ---NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ QQ AV + WRD +AR +DEST +VLPN + +IAK +P A L L+ + H
Sbjct: 294 MPFSGQQFAVYRAIWAWRDEVARREDESTPFVLPNGIIGDIAKHMPPDAKALHALIPN-H 352
Query: 234 SYIER 238
+++ +
Sbjct: 353 AFLAK 357
>gi|429849634|gb|ELA24996.1| exosome complex exonuclease [Colletotrichum gloeosporioides Nara
gc5]
Length = 908
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 135/236 (57%), Gaps = 8/236 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK Q L +VF DP KV HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 307 ISTREKDWVVDTLKPWRQQLQVLNQVFADPNIVKVFHGSYMDIIWLQRDLGLYVNGLFDT 366
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L + SL +LL F +A+K YQ ADWR+RPL EML YAR DTHYLLY+YD
Sbjct: 367 FYACEALHYPQKSLAFLLSKFANFDADKRYQMADWRMRPLSPEMLYYARSDTHYLLYVYD 426
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKEL---LSENSYLHIYGL---QG 173
++ +L M + N T E V ++S YE E +S YGL
Sbjct: 427 KVRNEL-VMKSDRGNPGTNYIETVLQKSKSQSLSRYEGEHFDPVSGKGPKGWYGLLLKHP 485
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
A + QQ AV + WRD +AR +DEST YVLPN + +IAK++P A L L+
Sbjct: 486 APFSGQQFAVYRAVWAWRDEVARREDESTAYVLPNAIIGDIAKRMPPDAKALHALI 541
>gi|356515280|ref|XP_003526329.1| PREDICTED: uncharacterized protein LOC100791485 [Glycine max]
Length = 873
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 138/230 (60%), Gaps = 16/230 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDT+ L +G LR +F +P+ KV HGAD DIVWLQRDF IY+ N+FDT
Sbjct: 162 ISTREKDYLVDTIALHDFMG-ILRPIFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDT 220
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV NK Q DWR RPL EM+ YAR D HYLLYI +
Sbjct: 221 SKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIAN 280
Query: 121 IMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKELLS---ENSYLHIY----- 169
+ +L + E+ +SD + E +RS +C QL++KE+ + E+S L ++
Sbjct: 281 CLINELKQLDNENSSSDDKFHFVLEASRRSNMICLQLFKKEIEASPGESSALSLFSRRVS 340
Query: 170 --GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 217
G AQ +V LC WRD++AR DES YVL ++ ++ +A Q
Sbjct: 341 SHGFPSISNEAQN--IVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQ 388
>gi|388857402|emb|CCF49076.1| related to RRP6-Exonuclease component of the nuclear exosome
[Ustilago hordei]
Length = 1006
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 157/288 (54%), Gaps = 26/288 (9%)
Query: 1 MSLRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+++DTL V Q L F DP+K KV+HGA+ D++WLQRD G+YL N+FD
Sbjct: 391 LSTRWGDWIIDTLSDEVRQHAELLNSSFTDPSKVKVLHGANHDVLWLQRDLGLYLVNLFD 450
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLYIY
Sbjct: 451 TYHATNVLMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIY 510
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG- 173
D ++ +L ES D + EV+ RS DV Y KE + + ++ G
Sbjct: 511 DNLRHEL----MESGGLDA-IREVFNRSKDVAMSTYAKEEWDSQGETREGWRSVWRKWGG 565
Query: 174 -AGLNAQ----------QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
A L + + +V L +WRD +AR +DES Y+L L+ +A + P
Sbjct: 566 EAALGTEDRRELSQMKKEERLVRALHKWRDGVAREEDESPRYILGANNLMMLAARAPVKP 625
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+ + S +++ +G + +IK+ ++ +E +KL EE+ +
Sbjct: 626 EGVLACVPPNASGLKKRIGELAKLIKDEVE---AWEKHQEKLSEEKRQ 670
>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
Length = 898
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 139/258 (53%), Gaps = 9/258 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DP+ KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 276 ISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLFDT 335
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L+L + SL++LLH + G +A+K+YQ ADWR+RPL ML YAR DTH+LLYI+D
Sbjct: 336 FHAASALQLPKKSLKFLLHEYVGFDADKQYQTADWRIRPLLAGMLDYARSDTHFLLYIFD 395
Query: 121 IMKIKLSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
++ +L +P ES + + +YD + + L
Sbjct: 396 RLRNQLLDLPSESGFGAGGREAIDCTERPTYDAATGR------GSGGWHDMLSNSPVALT 449
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 237
+Q AV L EWRD ARADDES VL R L +A+++P + R+ + +
Sbjct: 450 REQFAVFRALHEWRDKTARADDESPQTVLSKRALFRLAQEMPEDKFAVLRMGSPVSASLR 509
Query: 238 RYMGPVLSIIKNSMQNAA 255
V +I+ + Q
Sbjct: 510 SRTDEVAGLIREARQQGG 527
>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
Length = 935
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 141/246 (57%), Gaps = 20/246 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF IY+ N+FDT
Sbjct: 156 ISTQNEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDT 214
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI +
Sbjct: 215 AKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIAN 274
Query: 121 IMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYL 166
+ +L +SENS P + E +RS VC QLY KE+ S
Sbjct: 275 CLIAELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISR 332
Query: 167 HIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
H+ G G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT
Sbjct: 333 HLNGQGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQK 392
Query: 224 KLRRLL 229
++ L+
Sbjct: 393 EICTLI 398
>gi|452837795|gb|EME39736.1| hypothetical protein DOTSEDRAFT_138360 [Dothistroma septosporum
NZE10]
Length = 784
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 133/228 (58%), Gaps = 10/228 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTL+ + L EVF DP+ KV+HGA DIVWLQRD G+Y+ +FDT
Sbjct: 264 ISTRDKDWVVDTLQPWRRKMQCLNEVFVDPSIVKVLHGAYMDIVWLQRDLGLYIVGLFDT 323
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL +LL F +A K+YQ ADWR+RPLP E+ YAR DTH+LLYI+D
Sbjct: 324 HYAARALGYTGGSLAFLLKKFIDFDAQKQYQMADWRIRPLPQELFDYARSDTHFLLYIFD 383
Query: 121 IMK---IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 171
M+ ++ S K D + +V ++S +V Q YE + + +
Sbjct: 384 NMRNELVQRSDFSKPDHEGDK-VWDVLQKSNEVALQKYEHPIYDAELGQGAGGWYKMLAR 442
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
A + +Q +V + +WRD +AR D+ST YV+PN ++ IAK +P
Sbjct: 443 TPALFSKEQFSVFRAVHKWRDDVAREQDDSTHYVMPNHQVLSIAKAMP 490
>gi|357471299|ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
gi|355506989|gb|AES88131.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
Length = 974
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 144/243 (59%), Gaps = 19/243 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED+++DT+ L + LR VF DP+ KV HGAD D++WLQRDF IY+ N+FDT
Sbjct: 196 ISTQQEDYLIDTIALHDSM-EILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDT 254
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQ-----NADWRVRPLPDEMLRYAREDTHYL 115
+A VL + SL YLL +CGVN NK Q DWR RPL EM+ YAR D HYL
Sbjct: 255 SKACEVLSKPQKSLAYLLETYCGVNTNKLLQVWPNYREDWRQRPLSAEMVHYARTDAHYL 314
Query: 116 LYIYDIMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKELLS---ENSYLHIY 169
LYI + + +L + E+ SD + E +RS +C QL+ KE+ + E++ L +Y
Sbjct: 315 LYIANCLIDELKQLDNENSCSDDKFHFVLEASRRSNMICLQLFTKEIEASPGESAALSLY 374
Query: 170 GLQGAGLNA-------QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
+ + Q L++V LC WRD++AR DES YVL ++ ++ +A +LP +
Sbjct: 375 SRHQSNRASPSISNETQFLSIVRQLCTWRDLMARIHDESLKYVLSDQAIVALASRLPASN 434
Query: 223 AKL 225
+++
Sbjct: 435 SEI 437
>gi|225447009|ref|XP_002268685.1| PREDICTED: uncharacterized protein LOC100261955 [Vitis vinifera]
Length = 936
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 141/244 (57%), Gaps = 18/244 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF IY+ N+FDT
Sbjct: 156 ISTQNEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDT 214
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI +
Sbjct: 215 AKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIAN 274
Query: 121 IMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYL 166
+ +L +SENS P + E +RS VC QLY KE+ S
Sbjct: 275 CLIAELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISR 332
Query: 167 HIYGLQGAGLNAQQLA-VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
H+ G G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT ++
Sbjct: 333 HLNGQGGISSKACDLQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQKEI 392
Query: 226 RRLL 229
L+
Sbjct: 393 CTLI 396
>gi|340518928|gb|EGR49168.1| predicted protein [Trichoderma reesei QM6a]
Length = 818
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 132/236 (55%), Gaps = 7/236 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DPT KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 266 ISTREKDWIVDTLKPWRHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L SL +LL F +A+K YQ ADWR+RP+P+EML YAR DTH+LLYIYD
Sbjct: 326 FFASDALHYSSRSLAFLLSKFVNFDADKRYQLADWRIRPIPEEMLFYARSDTHFLLYIYD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ L + S + V ++S ++ +E +E + Y +
Sbjct: 386 KIRNDLVQVSDRSNPDKDLIGRVLEKSRELSLSRHEHPEFNEETGEGSRGWYNFVLKNSH 445
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
G ++Q AV L +WRDV AR +DE+ +VL L++IA+ P A L LL
Sbjct: 446 LGYKSEQFAVFRALWKWRDVTARTEDENPNFVLGTNNLVDIARANPPDAKALHSLL 501
>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
6), putative [Cryptococcus gattii WM276]
Length = 851
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 144/272 (52%), Gaps = 27/272 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+VVDTL LR ++ +VF DPT KV HGAD DIVWLQRDF I++ N+FD
Sbjct: 195 ISTRENDWVVDTLSLRKEIQQDKFGDVFTDPTVVKVFHGADSDIVWLQRDFEIFVVNLFD 254
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A VL + + SL LL H+C A+K YQ ADWR+RPLPD ML YAR DTH+LL+IY
Sbjct: 255 TYNACVVLGMPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLNYARSDTHFLLFIY 314
Query: 120 DIMKIKLSS---------------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS 164
D ++ L + N + EV +S + ++YE++ +
Sbjct: 315 DNLRNALLHKSSRPSSPAASGTIVLDSAKPNPQEAMREVLDKSAETALKMYERDSYDIET 374
Query: 165 YLHIYGLQGAG--------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
G AG + + V L +WRD +AR DES YV+PN L +++
Sbjct: 375 GRGSGGWLAAGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYVMPNNMLRDVST 434
Query: 217 QLPTTAAKLRRLLKSKHSYI-ERYMGPVLSII 247
A L R+++ + I +Y+ + SII
Sbjct: 435 A--DNTANLSRIIRRDRAPIAAQYIPEITSII 464
>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 824
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 133/234 (56%), Gaps = 14/234 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + D++VD + L + L +F +P K+ HGAD D +WLQRDF IY+ N+FDT
Sbjct: 109 ISTYSTDYLVDAIALHDDMH-LLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDT 167
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV+ K YQ +DWRVRPLP EM YAR D HYLLYI
Sbjct: 168 ARACDVLGKPQRSLAYLLQLYCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQ 227
Query: 121 IMKIKLSSMPKESE--NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
M+ L N + L EV +RS VC+QLYEKE + ++S + + G N
Sbjct: 228 CMRANLVQACNTPSLLNDNQLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLYNN 287
Query: 179 QQLA-----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
A +V L EWRD +ARA+DES +V+ + L+ +AK+ P T
Sbjct: 288 SNSAMRGEEDAYLRRLVQKLVEWRDALARAEDESLRFVMSDAALLAVAKERPLT 341
>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
Af293]
Length = 764
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 142/258 (55%), Gaps = 13/258 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 268 ISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDT 327
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LLH F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 328 YHAACALNYPKRSLKFLLHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYD 387
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQ 172
++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 388 HLRNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR-N 442
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 443 PAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPV 502
Query: 233 HSYIERYMGPVLSIIKNS 250
+ +L +IK +
Sbjct: 503 TPIAKDRAADLLEVIKKA 520
>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
A1163]
Length = 764
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 142/258 (55%), Gaps = 13/258 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 268 ISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDT 327
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LLH F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 328 YHAACALNYPKRSLKFLLHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYD 387
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQ 172
++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 388 HLRNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR-N 442
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 443 PAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPV 502
Query: 233 HSYIERYMGPVLSIIKNS 250
+ +L +IK +
Sbjct: 503 TPIAKDRAADLLEVIKKA 520
>gi|212528170|ref|XP_002144242.1| exosome component 3'-5' exonuclease [Talaromyces marneffei ATCC
18224]
gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Talaromyces marneffei
ATCC 18224]
Length = 795
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 146/264 (55%), Gaps = 25/264 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTL+ + L EVF DP KV HG+ DIVWLQRD G+Y+ +FDT
Sbjct: 271 ISTRDKDWVVDTLQPWREDLQQLNEVFADPNILKVFHGSTMDIVWLQRDLGLYVVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL + A+K+YQ ADWR+RPL +EMLRYAR DTHYLLYIYD
Sbjct: 331 YHAAVALGFPKRSLKFLLEKYARYEADKKYQMADWRLRPLTEEMLRYARADTHYLLYIYD 390
Query: 121 IMKIKL--SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 175
++ +L S PK ++ + V +RS Q YE+ + + G QGAG
Sbjct: 391 CLRNELLEKSTPKRNQ-----IDYVLERSKTEALQRYERPVYD------MAGGQGAGGWH 439
Query: 176 ---------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
L+ +Q AV + EWRD +AR +DE V P L ++A +P L
Sbjct: 440 DLLSRNPALLSKEQFAVFRAVHEWRDRVAREEDEGLQCVFPRHMLFKVAIAMPVDKHTLF 499
Query: 227 RLLKSKHSYIERYMGPVLSIIKNS 250
+ L ++ + +L++IK +
Sbjct: 500 KTLSPVTLIVKYRINELLALIKKA 523
>gi|358385873|gb|EHK23469.1| hypothetical protein TRIVIDRAFT_123406, partial [Trichoderma virens
Gv29-8]
Length = 821
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 128/236 (54%), Gaps = 7/236 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK L EVF DPT KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 266 ISTREKDWIVDTLKPWRHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L SL +LL F A+K YQ ADWR+RPLP+EM+ YAR DTHYLLYIYD
Sbjct: 326 FFASEALHYSSRSLAFLLSKFVNFEADKRYQLADWRIRPLPEEMMYYARSDTHYLLYIYD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ L + S ++ V ++S + +E +E + Y +
Sbjct: 386 KIRNDLVQLSDRSNPDKDLISIVLEKSRGLSLSRHENLEFNEETGEGSRGWYNFVLKNSH 445
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
G + Q A+ L +WRDV AR +DE+ +VL L EIA+ P A LL
Sbjct: 446 FGYKSDQFAIFRALWKWRDVTARTEDENPNFVLGTSNLTEIARANPPDAKAFHSLL 501
>gi|121705450|ref|XP_001270988.1| exosome component 3'-5' exonuclease [Aspergillus clavatus NRRL 1]
gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
NRRL 1]
Length = 778
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 13/264 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L +VF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 273 ISTRDKDWVVDTLKPWREDLQILNDVFADPAILKVLHGSSMDIIWLQRDLGLYVVGMFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 333 YHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQ 172
++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 393 HLRNEL----LENSTPDHSLIDYVSEQSKNEALQRYERPVYDAGTGQGQGGWYDYLYR-T 447
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 448 PAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFKIAQSMPLDQGTLFRTLSPM 507
Query: 233 HSYIERYMGPVLSIIKNSMQNAAN 256
+ +L +IK + A
Sbjct: 508 TPIVRDRAATLLEVIKQAKIEGAT 531
>gi|390603116|gb|EIN12508.1| hypothetical protein PUNSTDRAFT_97267 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 870
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 132/250 (52%), Gaps = 32/250 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTED++VDTL LR ++ L EVF DP KV HGA+ DI WLQ+DF +++ +FDT
Sbjct: 298 ISTRTEDWIVDTLVLRDELEE-LNEVFTDPRIVKVFHGAESDIQWLQQDFNVFVVGLFDT 356
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL R+ L LL +C A+K YQ ADWR+RPLP EML YAR DTHYLLYIYD
Sbjct: 357 FHASKVLHFPRHGLASLLEMYCDFIADKRYQLADWRIRPLPQEMLDYARSDTHYLLYIYD 416
Query: 121 IMKIKL----------------------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKE 158
++ L S S+ + L EV RS + +E+E
Sbjct: 417 HLRHALLERGTSPAFAAYTPVDITLETPISHLTPSDGATWLLREVLARSAQTTLRTFERE 476
Query: 159 LLSE---------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 209
L ++ + + Q AV + WRD +AR +DES YVLPN
Sbjct: 477 LYDADNGTGPAGWDTLARKWNKSAGAMPPVQRAVYRAVHAWRDRVAREEDESARYVLPNH 536
Query: 210 TLIEIAKQLP 219
L +IA+ P
Sbjct: 537 YLFQIAESPP 546
>gi|396483292|ref|XP_003841672.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans
JN3]
Length = 783
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 141/267 (52%), Gaps = 16/267 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF +P KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 258 ISTRNQDWIVDTLKPWRRKLECLNEVFANPDIIKVLHGAYMDIMWLQRDLGLYVVGLFDT 317
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL YLL F G A K+YQ ADWR+RPL E+ YAR DTH+LLYI+D
Sbjct: 318 YHAARSLGYPGASLAYLLDRFIGFKAQKQYQIADWRIRPLGKELFEYARADTHFLLYIFD 377
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
M+ +L S + +V ++S + Q YE + E +GL G
Sbjct: 378 NMRNELVEKSDLSNVEKNKVRDVLEKSKETALQRYEHPVYDEK-----FGLGTGGWYKLI 432
Query: 176 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
QQ AV + +WRD ++R +DES +++PN + +A+ +P+ + L +
Sbjct: 433 SRTPVQFTPQQFAVFRAVHQWRDELSRQEDESPLFIMPNHAVFSVARAMPSDKSALYNAV 492
Query: 230 KSKHSYIERYMGPVLSIIKNSMQNAAN 256
+ I ++ +I + Q N
Sbjct: 493 QHVSHIIRARADDLVRVITKAKQEGVN 519
>gi|342180559|emb|CCC90035.1| putative ribosomal RNA processing protein 6 [Trypanosoma congolense
IL3000]
Length = 745
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 147/250 (58%), Gaps = 4/250 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++D LKLR + L VF +P+ KV+HGA DI WLQ+DFG+Y+ N+FDT
Sbjct: 286 ISSRTEDFIIDCLKLRSHMH-LLAPVFLEPSIVKVLHGAREDIRWLQKDFGLYVVNLFDT 344
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD
Sbjct: 345 SVALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMISYAQQDTHFLLYVYD 403
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L V++ S + + YEK +L + +Y G GL+
Sbjct: 404 RLKQLLLNCESRATVGNM-LVHVFQESRALSLERYEKPQLDPDATYKLALGRSLGGLSLS 462
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
QL V + WRD AR D+S V+ ++ IA +LP +A ++ + +
Sbjct: 463 QLQVAREIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTN 522
Query: 240 MGPVLSIIKN 249
+ +L I+K+
Sbjct: 523 VMKLLQIVKS 532
>gi|407850984|gb|EKG05126.1| hypothetical protein TCSYLVIO_003804 [Trypanosoma cruzi]
Length = 713
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 149/256 (58%), Gaps = 4/256 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ED ++D LKLR + L VF +P KV+HGA DI WLQ+DFG+YL N FDT
Sbjct: 256 ISTRSEDILIDCLKLR-SLMHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + + L + + HFC V +K+YQ ADWR+RP+P EM+ YAR+DTH+LLY+YD
Sbjct: 315 GIALQTLHMP-HGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMVTYARQDTHFLLYVYD 373
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L V S + ++YEK +L + SY G GL++
Sbjct: 374 RLKTLLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSV 432
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
Q+ V + WRD IAR D+S VL ++ IA +LPT+A + + +
Sbjct: 433 QMQVAREIFNWRDAIAREVDDSPPAVLRLSAVLAIATKLPTSANDVLKCCTPVSMVVRTN 492
Query: 240 MGPVLSIIKNSMQNAA 255
+ ++ I+K+S+ + A
Sbjct: 493 VTRLVQIVKDSVGDDA 508
>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
Silveira]
Length = 772
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 140/257 (54%), Gaps = 11/257 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL + L EVF DP KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 271 ISTREKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L + SL++LL F + A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHASVALNYPKKSLKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGLQG 173
++ +L E DT L + V +S + Q YE+ + + + +
Sbjct: 391 NLRNELI----EKSTPDTNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSRSP 446
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ LN +QLAV + WRD AR DDE VL R L IA +P+ A L +L
Sbjct: 447 SLLNREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIPVS 506
Query: 234 SYIERYMGPVLSIIKNS 250
+ + + +L +IK++
Sbjct: 507 PSLRKRLSELLKVIKDA 523
>gi|303310683|ref|XP_003065353.1| exosome component 3'-5' exonuclease [Coccidioides posadasii C735
delta SOWgp]
gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 766
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 140/257 (54%), Gaps = 11/257 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL + L EVF DP KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 271 ISTREKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L + SL++LL F + A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHASVALNYPKKSLKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGLQG 173
++ +L E DT L + V +S + Q YE+ + + + +
Sbjct: 391 NLRNELI----EKSTPDTNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSRSP 446
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ LN +QLAV + WRD AR DDE VL R L IA +P+ A L +L
Sbjct: 447 SLLNREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAGLLKLAIPVS 506
Query: 234 SYIERYMGPVLSIIKNS 250
+ + + +L +IK++
Sbjct: 507 PSLRKRLSELLKVIKDA 523
>gi|342880534|gb|EGU81622.1| hypothetical protein FOXB_07858 [Fusarium oxysporum Fo5176]
Length = 860
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 131/236 (55%), Gaps = 7/236 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L +VF DP KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 289 ISTREKDWIVDTLQPWRHKLEVLNQVFTDPNVVKVFHGAYMDMVWLQRDLGLYVNGLFDT 348
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L SL YLL F +A+K+YQ ADWR+RPLP+EM+ YAR DTHYLLYIYD
Sbjct: 349 FFACEQLHYPAKSLAYLLSKFVDFDADKQYQLADWRIRPLPEEMMYYARSDTHYLLYIYD 408
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ +L + + + ++S + YE E + Y +I+
Sbjct: 409 RVRNELVAASDRGDVDKDYIGRAVEKSKEQSLSRYEHPGYDEETGEGSRGWYGYIFKNSH 468
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+++Q AV L +WRD AR +DEST YVL R + EIA+ P A L LL
Sbjct: 469 LAFDSEQFAVFRALWKWRDNTARKEDESTNYVLSTRDITEIARINPPDAKALHSLL 524
>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
Brener]
gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
Length = 768
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 148/256 (57%), Gaps = 4/256 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ED ++D LKLR + L VF +P KV+HGA DI WLQ+DFG+YL N FDT
Sbjct: 311 ISTRSEDILIDCLKLRSSMH-LLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDT 369
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + + L + + HFC V +K+YQ ADWR+RP+P EM YAR+DTH+LLY+YD
Sbjct: 370 GIALQTLHMP-HGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYD 428
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L V S + ++YEK +L + SY G GL++
Sbjct: 429 RLKTLLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSM 487
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
Q+ V + WRD IAR D+S VL ++ IA +LPT+A + + +
Sbjct: 488 QMKVAREIFNWRDAIAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVRTN 547
Query: 240 MGPVLSIIKNSMQNAA 255
+ ++ I+K+S+ + A
Sbjct: 548 VTRLVQIVKDSLGDDA 563
>gi|414886886|tpg|DAA62900.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 960
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 132/228 (57%), Gaps = 10/228 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED+++DT+ L +G LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT
Sbjct: 181 ISTQNEDYLIDTIALHDVMG-ILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDT 239
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A +L + SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI +
Sbjct: 240 AKACEILLKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIAN 299
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAG 175
+ +L + S + E RS VC QLY KE+ S + + LQ G
Sbjct: 300 CLASELHAKAYTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHG 359
Query: 176 LNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
++++ + +V C WRD++AR DES YVLP++ + +A LP
Sbjct: 360 FDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica CLIB122]
Length = 738
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 147/260 (56%), Gaps = 22/260 (8%)
Query: 1 MSLRTEDFVVDTLKLR-VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R +D+++DT+ LR +++ EV DP KV+HGA DI WLQRDFG+Y+ ++FD
Sbjct: 264 VSSREQDYIIDTIALRNLEI---FNEVLTDPKIVKVLHGATMDIQWLQRDFGLYIVSLFD 320
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A++ L L+ +SL +LL H+ +K+YQ +DWR+RP+ E L YAR DTH+LL IY
Sbjct: 321 TFHAAQALGLKGHSLAFLLQHYANFVTSKKYQLSDWRIRPMSPEQLLYARADTHFLLNIY 380
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN-- 177
D +K L K + V ++S Q YE YL + +G G+N
Sbjct: 381 DQLKNALVQKDK--------IEGVLEKSRQTASQRYEYTGYDPRYYLKSFDYEG-GINRL 431
Query: 178 -------AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 230
++V L WRD +AR +DESTGYV+PN L+ +A ++P T + + K
Sbjct: 432 ISQFHITGPSVSVAKALFLWRDSMARKEDESTGYVMPNYLLVSLANRMPQTPEAVFSVSK 491
Query: 231 SKHSYIERYMGPVLSIIKNS 250
S + + + +L +IK+S
Sbjct: 492 SLPLLVRKNVEEILDVIKDS 511
>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 738
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S RT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FD
Sbjct: 289 ISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFD 346
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+Y
Sbjct: 347 TSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVY 405
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNA 178
D +K L + + + L V++ S + + YEK L + +Y G GL++
Sbjct: 406 DRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSS 464
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 465 SQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRT 524
Query: 239 YMGPVLSIIKNSMQNA 254
+ +L I+K+++ +A
Sbjct: 525 NVMKLLQIVKDAIGSA 540
>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 736
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S RT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FD
Sbjct: 289 ISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFD 346
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+Y
Sbjct: 347 TSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVY 405
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNA 178
D +K L + + + L V++ S + + YEK L + +Y G GL++
Sbjct: 406 DRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSS 464
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 465 SQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRT 524
Query: 239 YMGPVLSIIKNSMQNA 254
+ +L I+K+++ +A
Sbjct: 525 NVMKLLQIVKDAIGSA 540
>gi|345564419|gb|EGX47382.1| hypothetical protein AOL_s00083g475 [Arthrobotrys oligospora ATCC
24927]
Length = 806
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 146/270 (54%), Gaps = 11/270 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTLKLR ++ L EVF +P KV HGA DI+WLQRD IY+ +FDT
Sbjct: 271 VSTREQDWIIDTLKLRDEL-EVLNEVFANPGIVKVFHGAFMDIIWLQRDLNIYVVGLFDT 329
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L +SL +LL + +A+K YQ ADWRVRP+P EML YAR DTH+LL+IYD
Sbjct: 330 YDAARSLGFTGHSLAFLLKKYINFDADKSYQLADWRVRPIPQEMLDYARSDTHFLLFIYD 389
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGLQGA 174
M+ +L + K + + + V S + C + Y+ E +L I
Sbjct: 390 NMRNEL--IGKSNAAEEDKIETVQNNSKETCLKTYDTEPYDPVNGGGSRGWLSILKHNAV 447
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+Q +V + WRD +AR +D++ +V+ L+ A+Q+P AA L S +
Sbjct: 448 NFTDEQFSVFRAVHAWRDRVAREEDDNPHFVMSKNHLLSFARQMPVDAAA--ALSVSSNP 505
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKL 264
+ + ++S IK + N F + L
Sbjct: 506 LLRSKLSDLVSTIKEAKANPVPFSSVQHLL 535
>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
Length = 703
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 151/256 (58%), Gaps = 6/256 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLRE-VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S RT+DF+VD LK+R + YL VF P KV HGA D+ WLQ+DFG+Y+ N+FD
Sbjct: 256 ISTRTQDFIVDCLKVRANM--YLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFD 313
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+Y
Sbjct: 314 TSIALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVY 372
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNA 178
D +K L + + + L V++ S + + YEK L + +Y G GL++
Sbjct: 373 DRLKQLLLNCEARASVGNM-LLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSS 431
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
QL V + WRD+ AR D+S V+ ++ IA +LPT+A ++ + +
Sbjct: 432 PQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRT 491
Query: 239 YMGPVLSIIKNSMQNA 254
+ +L I+K+++ +A
Sbjct: 492 NVMKLLQIVKDAIGSA 507
>gi|145252306|ref|XP_001397666.1| exosome component 3'-5' exonuclease [Aspergillus niger CBS 513.88]
gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
gi|350633598|gb|EHA21963.1| hypothetical protein ASPNIDRAFT_49025 [Aspergillus niger ATCC 1015]
Length = 782
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 144/270 (53%), Gaps = 25/270 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 271 ISTRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+IYD
Sbjct: 331 YHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYD 390
Query: 121 IMKIKL--SSMPKES------ENSDTPLTEVYKRS-YDVCR-----QLYEKELLSENSYL 166
++ +L +S+P + E S +VY+R YD Y +LLS NS +
Sbjct: 391 HIRNELVENSLPDNNLIDYVLEQSKKEALQVYERPVYDAATGQGPGGWY--DLLSRNSVV 448
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+N +Q AV + +WRD +AR +DE V P L +A +P L
Sbjct: 449 ---------VNREQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGTLF 499
Query: 227 RLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
R L ++ +L +IK + A+
Sbjct: 500 RTLSPVTPIVQNRAVDLLEVIKKAKDEGAD 529
>gi|358368335|dbj|GAA84952.1| exosome complex exonuclease Rrp6 [Aspergillus kawachii IFO 4308]
Length = 784
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 143/269 (53%), Gaps = 25/269 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 271 ISTRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+IYD
Sbjct: 331 YHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYD 390
Query: 121 IMKIKL--SSMPKES------ENSDTPLTEVYKRS-YDVCR-----QLYEKELLSENSYL 166
++ +L +S+P + E S +VY+R YD Y +LLS NS +
Sbjct: 391 HIRNELVENSLPDNNLVDYVLEQSKKEALQVYERPVYDAATGQGPGGWY--DLLSRNSVV 448
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+N +Q AV + +WRD +AR +DE V P L +A +P L
Sbjct: 449 ---------VNREQFAVFKAVHQWRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGTLF 499
Query: 227 RLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
R L ++ +L +IK + A
Sbjct: 500 RTLSPVTPIVQNRAVDLLEVIKKAKDEGA 528
>gi|393910372|gb|EFO27811.2| 3'-5' exonuclease [Loa loa]
Length = 844
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 130/220 (59%), Gaps = 7/220 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 306 ISTRQTDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDT 364
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 365 YKAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYD 424
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 179
++IKL + + + L VY S C +Y+K + + Y + L G LN++
Sbjct: 425 QLRIKLLD---QGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKL--LVGRKPLNSR 479
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
Q +A L +WRD ARADDES YVLP L++IA+ LP
Sbjct: 480 QQFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLP 519
>gi|242767043|ref|XP_002341292.1| exosome component 3'-5' exonuclease [Talaromyces stipitatus ATCC
10500]
gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 771
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 142/264 (53%), Gaps = 25/264 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTL+ + L EVF DP KV HG+ DIVWLQRD G+Y+ ++FDT
Sbjct: 271 ISTRDKDWVVDTLQPWREDLQRLNEVFTDPNILKVFHGSTMDIVWLQRDLGLYVVSLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL + A+K+YQ ADWR+RPL DEML+YAR DTHYLLYIYD
Sbjct: 331 YHAAVALGFPKRSLKFLLEKYAHYEADKKYQMADWRLRPLTDEMLKYARADTHYLLYIYD 390
Query: 121 IMKIKL--SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG--- 175
++ +L S PK ++ + V +RS Q YE+ + G QGAG
Sbjct: 391 CLRNELLEKSTPKRNQ-----IDYVLERSKTEALQRYERPVYD------TLGGQGAGGWY 439
Query: 176 ---------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+Q AV + EWRD +AR +DE V P L +A +P L
Sbjct: 440 DLLSRNSGQFTKEQFAVFKAVHEWRDRVAREEDEGLQCVFPRHVLFRVAVAMPVDKHTLF 499
Query: 227 RLLKSKHSYIERYMGPVLSIIKNS 250
+ L ++ + +L IIK +
Sbjct: 500 KTLSPVTLIVKDRVTELLDIIKKA 523
>gi|115396098|ref|XP_001213688.1| exosome component 3'-5' exonuclease [Aspergillus terreus NIH2624]
gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 761
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 136/254 (53%), Gaps = 9/254 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP+ KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 268 ISTREKDWVVDTLKPWREELQMLNEVFTDPSILKVLHGSSMDIIWLQRDLGLYIVGMFDT 327
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL+YLL F A+K YQ ADWR+RPLP M YAR DTHYLL+IYD
Sbjct: 328 YHAACALNYPKRSLKYLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLHIYD 387
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGA 174
++ +L + S +++ + V +RS Q YE+ + +
Sbjct: 388 HLRNELI---RNSTSNNNLIDYVLERSKTEALQRYERPVYDAALGQGPGGWYDYLSRSSV 444
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
++ +Q AV + +WRD +AR +DE V P L +A+ +P L R L +
Sbjct: 445 VVSKEQFAVFKAVHQWRDQVAREEDEGVQCVFPKHVLFRVAQVMPLDLGTLFRTLSPVTT 504
Query: 235 YIERYMGPVLSIIK 248
+ +L +IK
Sbjct: 505 IAKERASELLEVIK 518
>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
Length = 845
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 130/220 (59%), Gaps = 7/220 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 306 ISTRQTDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDT 364
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 365 YKAMRVLNYSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYD 424
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 179
++IKL + + + L VY S C +Y+K + + Y + L G LN++
Sbjct: 425 QLRIKLLD---QGDAAGNLLEYVYNESAQTCLTVYKKPVFESDGYEKL--LVGRKPLNSR 479
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
Q +A L +WRD ARADDES YVLP L++IA+ LP
Sbjct: 480 QQFALAALWKWRDERARADDESPQYVLPCHMLLQIAEVLP 519
>gi|414886885|tpg|DAA62899.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 951
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 132/228 (57%), Gaps = 10/228 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED+++DT+ L +G LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT
Sbjct: 181 ISTQNEDYLIDTIALHDVMG-ILRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDT 239
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A +L + SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI +
Sbjct: 240 AKACEILLKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIAN 299
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAG 175
+ +L + S + E RS VC QLY KE+ S + + LQ G
Sbjct: 300 CLASELHAKAYTSSDKINFFFEASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHG 359
Query: 176 LNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
++++ + +V C WRD++AR DES YVLP++ + +A LP
Sbjct: 360 FDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLPDQAIAALAVSLP 407
>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
Length = 892
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 131/225 (58%), Gaps = 11/225 (4%)
Query: 1 MSLRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
+S +D+++D + +Q+ L E F +P KV HG++ D+ WLQRDFGIY+ MF
Sbjct: 314 ISTDEKDYIIDPFPIWNDMQI---LNEPFTNPNILKVFHGSEYDVQWLQRDFGIYVVGMF 370
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
DT A VL + SL +L+ C V +KE Q ADWRVRPL + YAR DTHYLLY
Sbjct: 371 DTFCAMHVLNFAKYSLAHLVQSICNVTLDKELQKADWRVRPLTTAHIEYARSDTHYLLYC 430
Query: 119 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG-AGLN 177
YD ++ +L + ES N L Y S +CR +Y+K Y + L+G LN
Sbjct: 431 YDTLRQRLINEGNESNNL---LRSTYNESALICRTVYKKPKFESEGYETL--LRGRKSLN 485
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
++QL + L +WRD ARA+DES YVLPN L++IA+ LP A
Sbjct: 486 SRQLYALKALWKWRDDRARAEDESLEYVLPNHMLLQIAEVLPREA 530
>gi|402080291|gb|EJT75436.1| exosome complex exonuclease Rrp [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 834
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 6/276 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L +VF DP KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 275 VSTRDKDWVVDTLKPWRRRLEVLNQVFADPKILKVFHGAFMDIIWLQRDLGLYVVGLFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L SL YLL F A+K +Q ADWR+RPL EML YAR DTHYLLY+YD
Sbjct: 335 FHAAEALLYPSKSLAYLLKKFADFEADKRFQMADWRIRPLSKEMLYYARSDTHYLLYVYD 394
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSENSYLHIYGLQG--A 174
+M+ +L + + + + ++S + Q +E + + + G+ +
Sbjct: 395 MMRNELVKQSRRGDPDGDLVEKALQKSKETSLQRHEPYTSDPVTGKGTRGWFNGISRIPS 454
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
++Q AV L WRD AR +DES Y++ + L+E ++ +P++ +LR+L +
Sbjct: 455 NFTSEQFAVFRELHRWRDETARREDESPMYIMSQQVLVEASRAMPSSPNELRKLFFHPSN 514
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
++ + ++ +IK + + A + LK +R++
Sbjct: 515 PLKDGVNQLVRLIKRAREKGAEGPTLMDVLKADRVD 550
>gi|119491955|ref|XP_001263472.1| exosome component 3'-5' exonuclease [Neosartorya fischeri NRRL 181]
gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
NRRL 181]
Length = 765
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 147/275 (53%), Gaps = 27/275 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 268 ISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDT 327
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR+RPLP M YAR DTHYLLYIYD
Sbjct: 328 YHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYD 387
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS-------YLHIYGLQ 172
++ +L E+ D L + V ++S + Q YE+ + + Y ++Y
Sbjct: 388 HLRNEL----LENSTPDHNLVDYVLEQSKNEALQRYERPVYDAATGQGQGGWYDYLYR-N 442
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK 232
A L+ +Q AV + +WRD +AR +DE V P L +IA+ +P L R L
Sbjct: 443 PAVLSKEQFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTL--- 499
Query: 233 HSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE 267
PV I K+ AA+ + QK K E
Sbjct: 500 --------SPVTPIAKD---RAADLLEVIQKAKIE 523
>gi|409075144|gb|EKM75528.1| hypothetical protein AGABI1DRAFT_79866 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 882
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 153/311 (49%), Gaps = 60/311 (19%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDFVVD + LR ++ L EVF DP KV HGA+ DIVWLQ+DF +Y+ N+FDT
Sbjct: 285 ISTREEDFVVDVIALRDEME-VLNEVFTDPKIVKVFHGAESDIVWLQQDFNLYVVNLFDT 343
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS++L+ R+ L LL +C +K YQ ADWR+RPLP EML YAR DTH+LL+IYD
Sbjct: 344 YHASKLLEFPRHGLANLLEMYCDYIPDKRYQLADWRIRPLPKEMLEYARSDTHFLLFIYD 403
Query: 121 IMKIK------------------------------LSSMPKESENSDTPL----TEVYKR 146
++ L + P + S PL V R
Sbjct: 404 NLRNALLDRGGPASRSRSSSPPNASTSLSTPPANILRTPPPTAHASKNPLHASINHVLTR 463
Query: 147 SYDVCRQLYEKELLSENSYLHIYGL------------------------QGAGLNAQQLA 182
S + C ++Y KE+ +S G +G + Q A
Sbjct: 464 SSETCLRVYVKEVYDRSSGTGSNGWDTLARKWNKPLFTALSFSYQSSSDEGHNVPEMQKA 523
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-HSYIERYMG 241
V + WR+ ++R +DEST YVLPN+ L IA+ P L RL S ++R
Sbjct: 524 VYRAVHWWRESVSREEDESTRYVLPNQYLFRIAEAPPGDLGNLLRLFGSSVPVVVKRRAK 583
Query: 242 PVLSIIKNSMQ 252
+L +++N+++
Sbjct: 584 ELLDVVRNAVK 594
>gi|169767462|ref|XP_001818202.1| exosome component 3'-5' exonuclease [Aspergillus oryzae RIB40]
gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871959|gb|EIT81108.1| exosome 3'-5' exoribonuclease [Aspergillus oryzae 3.042]
Length = 760
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 166/333 (49%), Gaps = 23/333 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP+ KV HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 263 ISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDT 322
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I+D
Sbjct: 323 YHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFD 382
Query: 121 IMKIKLSSMPKESENSDTP----LTEVYKRSYDVCRQLYEKELLSENS------YLHIYG 170
++ +L ENS TP + V ++S D Q +E+ + +
Sbjct: 383 HLRNEL------IENS-TPENNLIDYVLEKSKDEALQRFERSPYDAATGQGPGGWYDYLS 435
Query: 171 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLK 230
A L+ +Q AV + +WRD +AR +DE V P L ++A +P L R L
Sbjct: 436 RNPAVLSKEQFAVFKAVHQWRDAVAREEDEGVQCVFPKHVLFKVAHAMPLDLGTLFRTLS 495
Query: 231 SKHSYIERYMGPVLSIIKNSMQNAAN----FEVIAQKLKEERMEVASEETEVLVLDTSSN 286
+ +L++IKN+ A+ +V + + R A+E + LV
Sbjct: 496 PVTPIAKDRAADLLAVIKNAKIEGADGPEWRDVYVKPTRAGRSVPATETEQGLVTPPIGE 555
Query: 287 LKIPNVGRESVDGV-DALVGTTMP-HPPAYTQL 317
P R V A++ T P PP Y+ +
Sbjct: 556 ENFPTAARCEVSQFWGAVLDTREPLTPPEYSAV 588
>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
77-13-4]
Length = 833
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 140/240 (58%), Gaps = 15/240 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L EVF +P KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 266 ISTREKDWIVDTLQPWRHKLEVLNEVFTNPKIIKVFHGAYMDMVWLQRDLGLYVNGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L SL +LL F +A+K+YQ ADWR+RP+P+EM+ YAR DTHYLLYIYD
Sbjct: 326 FFACDQLHYPAKSLAFLLSKFVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYIYD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL---------YEKEL--LSENSYLHIY 169
++ +L + +S+ P T + +R+ + R+L Y++E S Y +++
Sbjct: 386 KVRNELVATSDKSK----PETNLIERALEKSRELSLSRYENPGYDEETGEGSRGWYGYVF 441
Query: 170 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
L+++Q AV + +WRD ARA+DE+ YVL R + EIA+ P A L LL
Sbjct: 442 KNSHMALDSEQFAVFKAVWKWRDDTARAEDENPNYVLSTRDITEIARLNPPDAKALHSLL 501
>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 947
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 7/222 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S +D+++D L LR ++ L EVF T K+ HGAD+DI WLQRD +Y+ NMFDT
Sbjct: 299 ISTEDKDYLIDALALRDKLS-ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDT 357
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA++ L+ SL +L+ FC V NK++Q ADWR+RPLPDE+ YAREDTHYL+YIY
Sbjct: 358 HQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYK 417
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+MK +L ++ D L V +RS +VC++ Y K +L E+S+L +Y + +Q
Sbjct: 418 MMKRELLH---KTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDNRQ 474
Query: 181 LAVV---AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + S YVLPN L++I++ LP
Sbjct: 475 MYALKEXXXXXXXXXXXXXXXXXSCSYVLPNHMLLQISELLP 516
>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
nagariensis]
Length = 191
Score = 175 bits (444), Expect = 6e-41, Method: Composition-based stats.
Identities = 81/136 (59%), Positives = 98/136 (72%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D+VVDTL LR Q+GP L VF DP KV HGAD D+ WLQRDF ++L NMFDT
Sbjct: 43 ISTRTTDYVVDTLALRNQLGPALARVFADPRVVKVFHGADSDVDWLQRDFSLFLVNMFDT 102
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL L L YLL CGV A+K YQ ADWRVRPL ML YAR DTHYLLY+YD
Sbjct: 103 GQAARVLGLPSFGLAYLLESICGVQADKRYQMADWRVRPLSPPMLHYARCDTHYLLYVYD 162
Query: 121 IMKIKLSSMPKESENS 136
++ +L+++P + +S
Sbjct: 163 KLREQLAALPDQRVSS 178
>gi|449493231|ref|XP_004159228.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101225221 [Cucumis sativus]
Length = 877
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S ED++VDT+ L + LR VF + KV HGAD DI+WLQRDF IY+ N+FDT
Sbjct: 156 ISTHKEDYLVDTIALHDSLN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDT 214
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV NK Q DWR RPLP +M++YAR D HYLLYI +
Sbjct: 215 AKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHYLLYIAN 274
Query: 121 IMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYG 170
+ ++L + + S D L E +RS C QLY KE S H+
Sbjct: 275 CLLVELKQVNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIWSRHLNS 334
Query: 171 LQGAGL-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
G+ L + + V LC WRD++AR DES YVL ++ ++ IA Q+P +L
Sbjct: 335 QGGSALISCKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTGEL 390
>gi|407404412|gb|EKF29876.1| hypothetical protein MOQ_006321 [Trypanosoma cruzi marinkellei]
Length = 713
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 153/268 (57%), Gaps = 9/268 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ED ++D LKLR + L VF + KV+HGA DI WLQ+DFG+YL N FDT
Sbjct: 256 ISTRSEDILIDCLKLRSSMH-LLAPVFLNSNILKVLHGAREDIRWLQKDFGLYLVNFFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G A + L + + L + + HFC V NK+YQ ADWR+RP+P EM+ YAR+DTH+LLY+YD
Sbjct: 315 GIALQTLHMP-HGLAFAVDHFCQVKLNKKYQTADWRIRPIPAEMVAYARQDTHFLLYVYD 373
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L V S + ++YEK +L + SY G GL++
Sbjct: 374 RLKTLLLNSEGRASIGNL-LVHVLNESRRLSLEIYEKPQLDPDASYKVALGRSLGGLSSM 432
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
QL V + WRD AR D+S VL ++ IA +LPT+A + + +
Sbjct: 433 QLQVAREIFNWRDATAREVDDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVRTN 492
Query: 240 MGPVLSIIKNSMQNAA-----NFEVIAQ 262
+ ++ I+K+++ + A +F+V A+
Sbjct: 493 VTRLVQIVKDAVGDDAIAKNSDFDVKAE 520
>gi|449453692|ref|XP_004144590.1| PREDICTED: uncharacterized protein LOC101204374 [Cucumis sativus]
Length = 877
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S ED++VDT+ L + LR VF + KV HGAD DI+WLQRDF IY+ N+FDT
Sbjct: 156 ISTHKEDYLVDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDT 214
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV NK Q DWR RPLP +M++YAR D HYLLYI +
Sbjct: 215 AKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLPADMVQYARTDAHYLLYIAN 274
Query: 121 IMKIKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKEL--------LSENSYLHIYG 170
+ ++L + + S D L E +RS C QLY KE S H+
Sbjct: 275 CLLVELKQVNENSSTDDKFNFLLEASRRSNMTCLQLYSKETEGSPGESAASSIWSRHLNS 334
Query: 171 LQGAGL-NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
G+ L + + V LC WRD++AR DES YVL ++ ++ IA Q+P +L
Sbjct: 335 QGGSALISCKTQDRVRRLCAWRDLMARVHDESLRYVLSDQAIVAIAIQVPKNTGEL 390
>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 756
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 133/256 (51%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTL+ + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 265 ISTRDKDWVVDTLQPWREDLQMLNEVFADPKILKVLHGSTMDIIWLQRDLGLYVVGMFDT 324
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR RPLP M YAR DTHYLLYIYD
Sbjct: 325 FHAASALGFPKRSLKFLLSKFVNFEADKRYQTADWRARPLPPAMFDYARSDTHYLLYIYD 384
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGA 174
++ L E + + V +RS Q YE+ + + + A
Sbjct: 385 RLRNDLIDNSTEDASH---IDYVNERSKHEALQRYERPVYDAVNGYGPGGWYDLLWRHSA 441
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L+ +Q AV + +WRD +ARA+DE V P L ++A +P L R L
Sbjct: 442 NLSKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATVMPLDMGSLFRTLSPMTP 501
Query: 235 YIERYMGPVLSIIKNS 250
+ +L +IK +
Sbjct: 502 ITKERSHDLLEVIKKA 517
>gi|119195137|ref|XP_001248172.1| exosome component 3'-5' exonuclease [Coccidioides immitis RS]
gi|392862584|gb|EAS36760.2| exosome complex exonuclease Rrp6 [Coccidioides immitis RS]
Length = 766
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 139/257 (54%), Gaps = 11/257 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL + L EVF DP KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 271 ISTREKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L + SL++LL F + A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHASVALNYPKKSLKFLLDKFVNLEAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENS------YLHIYGLQG 173
++ +L E DT L + V +S + Q YE+ + + + +
Sbjct: 391 NLRNELI----EKSTPDTNLIDYVQDKSKEEALQRYERPVYDAETGQGSGGWYDVLSRSP 446
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ L +QLAV + WRD AR DDE VL R L IA +P+ A L +L
Sbjct: 447 SLLKREQLAVFKAVHRWRDQTARTDDEGVQSVLSKRALFAIAHGMPSDQAALLKLAIPVS 506
Query: 234 SYIERYMGPVLSIIKNS 250
+ + + +L +IK++
Sbjct: 507 PSLRKRLSELLKVIKDA 523
>gi|339252698|ref|XP_003371572.1| exosome component 10 [Trichinella spiralis]
gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
Length = 827
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VD + ++ L E F DP KVMHG+ +DI WLQRDFGIY+ N+FDT
Sbjct: 296 ISTRDTDYIVDPFPIWHEMY-ILNEPFVDPNIVKVMHGSSQDIQWLQRDFGIYVVNLFDT 354
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A VL++ + SL++L+ GVN +K YQ ADWR+RPL +ML YAR D+HYLLY +D
Sbjct: 355 YHAMEVLEMPQRSLKFLVKELVGVNLDKSYQTADWRIRPLGSKMLAYARSDSHYLLYCWD 414
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+++ +L + + +E +D + V KRS D C Q+Y+K+ +E + L+ +Q
Sbjct: 415 VLRNQL--LNRGNEYNDLMMI-VLKRSSDTCLQVYKKKFPNEFELRKLESKFPFNLDNRQ 471
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ L WRD +AR DES Y++ N TL +A +LP
Sbjct: 472 KYALRMLYYWRDGVARITDESVYYIMRNETLRNLAAKLP 510
>gi|452004410|gb|EMD96866.1| hypothetical protein COCHEDRAFT_1085740 [Cochliobolus
heterostrophus C5]
Length = 792
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 148/289 (51%), Gaps = 15/289 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 258 ISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYIVGLFDT 317
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYIYD
Sbjct: 318 YHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHFLLYIYD 377
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGA 174
M+ +L S+ + +V ++S + Q YE + L + + +
Sbjct: 378 NMRNELIEKSDFSDPDKNKVQDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKLISRTPV 437
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-- 232
+Q AV + WRD + R +DES +++PN + +A+ +P A L ++
Sbjct: 438 QFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHVSH 497
Query: 233 --HSYIERYMGPVLSIIKNSMQNA---ANFEVIAQKLKEERM--EVASE 274
S+ E +G V+ K + + I LK ER E A+E
Sbjct: 498 IIRSHAEELVGVVVEAKKEGLHGPELHTTLQTIEDMLKAERAGSETAAE 546
>gi|343471692|emb|CCD15945.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 604
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 147/250 (58%), Gaps = 4/250 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++D LKLR + L VF +P+ KV+HGA DI WLQ+DFG+Y+ N+FDT
Sbjct: 286 ISSRTEDFIIDCLKLRSHMH-LLAPVFLEPSIVKVLHGAREDIRWLQKDFGLYVVNLFDT 344
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + L + +SL + + HFC V NK+YQ ADWRVRP+P EM+ YA++DTH+LLY+YD
Sbjct: 345 SVALQNLHMP-HSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMISYAQQDTHFLLYVYD 403
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-ELLSENSYLHIYGLQGAGLNAQ 179
+K L + + + L V++ S + + YEK +L + +Y G GL+
Sbjct: 404 RLKQLLLNCESRATVGNM-LVHVFQESRALSLERYEKPQLDPDATYKLALGRSLGGLSLS 462
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
QL V + WRD AR D+S V+ ++ IA +LP +A ++ + +
Sbjct: 463 QLQVAREIFNWRDAAAREADDSPSAVMHISCVLSIATRLPLSANEVLKCCSPVSVIVRTN 522
Query: 240 MGPVLSIIKN 249
+ +L I+K+
Sbjct: 523 VMKLLQIVKS 532
>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
18188]
Length = 814
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 141/256 (55%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 272 ISTREKDWIVDTLKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 332 YHAAVALNYPKRSLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ------GA 174
++ +S+ + S + + V +RS Q YE+ + + + G Q +
Sbjct: 392 QIR---NSLVEHSTPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRNSS 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P A L R +
Sbjct: 449 LFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSP 508
Query: 235 YIERYMGPVLSIIKNS 250
+ ++ +IK +
Sbjct: 509 LVRARASELVQVIKQA 524
>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
ARSEF 23]
Length = 830
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 134/236 (56%), Gaps = 7/236 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL+ L +VF DP+ KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 266 VSTRDRDWIVDTLQPWRHKLEVLNDVFADPSVVKVFHGAYMDMVWLQRDLGLYVNGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A +L SL +LL F G +A+K+YQ ADWR+RP+P++ML YAR DTHYLLYIYD
Sbjct: 326 YFACNLLNYPGRSLAFLLSKFVGFDADKQYQLADWRIRPIPEDMLYYARSDTHYLLYIYD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ +L +S+ + + +RS ++ +E +E + Y +++
Sbjct: 386 NVRNELIEASDKSDPEKDYINQALERSRELALSRHENPDYNETTGEGARGWYNYVFKHSH 445
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
LN +Q ++ L +WRD AR +DES +VL + EIA+ P L LL
Sbjct: 446 LALNGEQFSIFKALWKWRDETARQEDESPNFVLGPTNVTEIARVNPPDVKALHSLL 501
>gi|261206146|ref|XP_002627810.1| exosome component 3'-5' exonuclease [Ajellomyces dermatitidis
SLH14081]
gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
SLH14081]
Length = 814
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 141/256 (55%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 272 ISTREKDWIVDTLKPWREELQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 332 YHAAVALNYPKRSLKFLLEKFVNFQAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ------GA 174
++ +S+ + S + + V +RS Q YE+ + + + G Q +
Sbjct: 392 QIR---NSLVEHSTPDNNLIAYVLERSKQEALQRYERPVYNAETGQGSGGWQDMLIRNSS 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P A L R +
Sbjct: 449 LFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPASLLRTISPVSP 508
Query: 235 YIERYMGPVLSIIKNS 250
+ ++ +IK +
Sbjct: 509 LVRARASELVQVIKQA 524
>gi|451855365|gb|EMD68657.1| hypothetical protein COCSADRAFT_157073 [Cochliobolus sativus
ND90Pr]
Length = 791
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 147/291 (50%), Gaps = 16/291 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 258 ISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDIMWLQRDLGLYIVGLFDT 317
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYIYD
Sbjct: 318 YHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPELFEYARADTHFLLYIYD 377
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGA 174
M+ +L S + +V ++S + Q YE + L + + +
Sbjct: 378 NMRNELVEKSDFSNPDKNKVHDVLEKSKETSLQRYEHPIYDSETGLGSSGWYKLISRTPV 437
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSK-- 232
+Q AV + WRD + R +DES +++PN + +A+ +P A L ++
Sbjct: 438 QFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARAMPADKAALFNAIQHVSH 497
Query: 233 --HSYIERYMGPVLSIIKNSMQNA---ANFEVIAQKLKEERMEVASEETEV 278
S+ E +G V+ K + + I LK ER A ET V
Sbjct: 498 IIRSHAEELVGVVVEAKKEGLHGPELHTTLQTIEDMLKAER---AGPETAV 545
>gi|357116782|ref|XP_003560156.1| PREDICTED: uncharacterized protein LOC100837522 [Brachypodium
distachyon]
Length = 909
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 135/229 (58%), Gaps = 11/229 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED+++DT+ L +G LR VF P+ K+ HGAD D++WLQRDF IY+ N+FDT
Sbjct: 187 ISTQKEDYLIDTIALHDAMG-ILRPVFSSPSICKIFHGADNDVLWLQRDFHIYVVNIFDT 245
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV +K Q DWRVRPL EM+ YAR D HYLL I +
Sbjct: 246 AKACEVLSKPQKSLAYLLEIYCGVTTDKTMQREDWRVRPLTPEMVEYARSDAHYLLKIAN 305
Query: 121 IMKIKLSSMPKESENSDTP-LTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGA 174
+ +L + +S + T E +RS VC QLY KE+ S + + LQ
Sbjct: 306 CLASELHAKACDSPDGKTNFFLEASRRSNMVCMQLYAKEIECPPGASSAASILSRNLQTH 365
Query: 175 GLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
GL++++ + +V C WRD++AR DES Y+L ++ + +A +P
Sbjct: 366 GLDSKKSSEVKDLVRKFCAWRDLMARMHDESLRYILSDQAIASLAVSVP 414
>gi|406606562|emb|CCH42061.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 744
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 146/265 (55%), Gaps = 20/265 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L VF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 260 ISTRDQDWLIDTLALREDLK-ILNSVFTDPKITKVFHGAFMDIIWLQRDLGLYIVSLFDT 318
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L ++SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I+D
Sbjct: 319 YHASRQLGFPKHSLAYLLERFAHFKTSKKYQLADWRIRPLTGPMKLYARSDTHFLLNIFD 378
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSENSYLHIYG------ 170
+L +M ES LT V S +V R+ +E + L S N I
Sbjct: 379 ----QLRNMLIES----NKLTNVLFESRNVARRRFEYSSFRPLASTNVVSPIEKPEPWKS 430
Query: 171 -LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
L L+A + AVV L +WRD IA+ DDES YV+PN+ L+ +A +PT A +
Sbjct: 431 LLYQYNLSASREAVVRSLYQWRDQIAKQDDESPRYVMPNQLLVSLASLVPTDPAGVLSSS 490
Query: 230 KSKHSYIERYMGPVLSIIKNSMQNA 254
++ + + +IK SM+ A
Sbjct: 491 NLISDHVRKNAKEISELIKRSMKEA 515
>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 142/259 (54%), Gaps = 11/259 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLKLR Q+ P L E+F +P KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 280 LSTRDDDYIVDTLKLRGQLEP-LNEIFTNPRVIKVLHGAFMDIIWLQRDLGLYIVGLFDT 338
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L+ R L ++L + +A+K+YQ ADWR+RPLP EML YAR DTHYLLY +D
Sbjct: 339 FYAAQALEFARFGLAHILKKYVNFDADKQYQMADWRLRPLPKEMLDYARSDTHYLLYCFD 398
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA----GL 176
M+ L E S + V ++S + + Y ++ + +G
Sbjct: 399 CMRNSL------VEKSRGDVEHVLQKSKETALRRYIRDTYDAATGEGTFGWASQIIKFKF 452
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 236
N Q V + WRD AR +DES +V TL ++ +PT + + + +
Sbjct: 453 NRTQEFVFKAVHAWRDQAAREEDESPTFVCSRSTLGALSTAMPTDYDGVAKCIHDTNHLA 512
Query: 237 ERYMGPVLSIIKNSMQNAA 255
+ +G ++ IK +++ A
Sbjct: 513 KSRIGEIVEAIKGALEQAG 531
>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
Length = 831
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 135/236 (57%), Gaps = 7/236 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L +VF +P+ KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 266 VSTRDQDWIVDTLQPWRHKLEVLNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A +L SL +LL F G +A+K+YQ ADWR+RP+P+EML YAR DTHYLLYI+D
Sbjct: 326 YFACDLLNYPGKSLAFLLSKFVGFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLYIFD 385
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ +L +S+ + + +RS ++ +E +E + Y +++
Sbjct: 386 NVRNELIEASDKSDPEKDYINQALERSRELALSRHENPDYNETTGEGARGWYNYVFKHSH 445
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
LN +Q ++ L +WRD AR +DES +VL + EIA+ P L LL
Sbjct: 446 LALNGEQFSIFKALWKWRDETARQEDESPNFVLGATNVTEIARVNPPDVKALHSLL 501
>gi|358394505|gb|EHK43898.1| hypothetical protein TRIATDRAFT_172602, partial [Trichoderma
atroviride IMI 206040]
Length = 816
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 132/237 (55%), Gaps = 12/237 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK L EVF DPT KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 266 ISTREKDWVVDTLKPWRHKLQVLNEVFADPTIVKVFHGAYMDMVWLQRDLGLYVNGLFDT 325
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS L SL +LL F +A+K YQ ADWR+RPL +EM+ YAR DTHYLLYIYD
Sbjct: 326 FFASDALHYSSRSLAFLLSKFVNFDADKRYQLADWRIRPLSEEMMFYARSDTHYLLYIYD 385
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELL-------SENSYLHIYGLQ 172
++ +L +S +SD L + V +RS ++ +E S + +
Sbjct: 386 KIRNELV----QSSDSDKHLVKRVLERSRELSLSRHENPECNAETGEGSRGWFNFVLKNS 441
Query: 173 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
G ++Q A+ L WRD+ AR +DE+ +VL N L EI + P A L LL
Sbjct: 442 QLGYKSEQFAIFRALWNWRDLTARKEDENPNFVLGNNNLTEIVRVNPPDAKALHSLL 498
>gi|340053178|emb|CCC47466.1| putative ribosomal RNA processing protein 6 [Trypanosoma vivax
Y486]
Length = 709
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+DF++D LKLR + L VF P KV+HGA DI WLQ+DFGIY+ N+FDT
Sbjct: 253 ISTRTQDFIIDCLKLRASMH-LLSPVFLSPRIIKVLHGAREDIRWLQKDFGIYVVNLFDT 311
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + L + SL + + HFC V +K+YQ ADWRVRP+P EM+ YA++DTH+LLYIYD
Sbjct: 312 SIALQQLHMP-YSLAFAVDHFCQVKLDKKYQTADWRVRPIPIEMVSYAQQDTHFLLYIYD 370
Query: 121 -IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN-SYLHIYGLQGAGLNA 178
+ + L+ + S + L V++ S + + YEK +L + +Y G GL+
Sbjct: 371 RLCALLLNCEARPSVGN--LLLHVFQESRLLSLERYEKPVLEPDVTYKVALGRSLGGLSK 428
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
QL V + WRD AR D+S V+ +++ IA +LP++A + R +
Sbjct: 429 AQLQVAQEIFNWRDGAAREADDSPSAVMHLSSVLSIATRLPSSANDVLRCCSPVSVIVRT 488
Query: 239 YMGPVLSIIKNSMQNA 254
+ +L I+K+++ A
Sbjct: 489 NVMKLLQIVKDAVGGA 504
>gi|410081706|ref|XP_003958432.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
gi|372465020|emb|CCF59297.1| hypothetical protein KAFR_0G02660 [Kazachstania africana CBS 2517]
Length = 735
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 145/266 (54%), Gaps = 21/266 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT+ LR + L EVF DP+ KV+HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 256 ISTRETDYLVDTIALRNDLK-VLNEVFTDPSVVKVLHGAFMDIIWLQRDLGLYIVSLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R+SL YLL F +K+YQ ADWRVRPL M YAR DTH+LL IYD
Sbjct: 315 FHASRALGFPRHSLAYLLEEFANFKTSKKYQLADWRVRPLSKAMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYG----- 170
++ +L K L V S +V ++ +E S N Y +
Sbjct: 375 QLRNRLVETNK--------LVGVLNESRNVAKRRFEYSKFRPRVPSPNVYSALEKEDPWR 426
Query: 171 --LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + +++ ++ GL EWRD+IAR DDES Y++PN+ ++ + PT A +
Sbjct: 427 TLMFQYNIPSEREDLLKGLFEWRDMIARRDDESPRYIMPNQLMVTLVAYTPTDPAGVISA 486
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQNA 254
+ Y+ + ++IKN++ A
Sbjct: 487 SQVVTDYVRSNSKIIANLIKNALTRA 512
>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
Length = 805
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 137/258 (53%), Gaps = 16/258 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 275 ISTRDKDWIVDTLKPWRRKLECLNEVFADPNILKVLHGAYMDIMWLQRDLGLYIVGLFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L SL YLL A K+YQ ADWR+RPL E+ YAR DTH+LLYI+D
Sbjct: 335 HHAARSLGYPGGSLAYLLERHVQFKAQKQYQLADWRIRPLGKELFEYARADTHFLLYIFD 394
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
M+ +L S+ + +V +S +V Q YE + Y GL AG
Sbjct: 395 NMRNELVERSDFSDPEKNKVQDVLIKSKEVALQRYEHPV-----YDAKLGLGSAGWHKLI 449
Query: 176 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
QQ +V + +WRD ++R +DES +++PN + +A+ +P A L +
Sbjct: 450 MRTPVQFTPQQFSVFRAVHQWRDSLSRKEDESPLFIMPNHAVFSVARAMPVDKAALFNAI 509
Query: 230 KSKHSYIERYMGPVLSII 247
+ I ++S+I
Sbjct: 510 QHVSHIIRGKADELVSVI 527
>gi|343427876|emb|CBQ71402.1| related to RRP6-Exonuclease component of the nuclear exosome
[Sporisorium reilianum SRZ2]
Length = 921
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 199/429 (46%), Gaps = 53/429 (12%)
Query: 1 MSLRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D++VDTL V + L F P K KV+HGA+ D++WLQRD G+YL N+FD
Sbjct: 368 LSTRWGDWIVDTLADEVREHAALLNTSFTHPEKVKVLHGANHDVLWLQRDLGLYLVNLFD 427
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLYIY
Sbjct: 428 TYHATNVLLFPSHGLNYLMARYCRFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIY 487
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG- 173
D ++ +L + +V++RS DV Y KE S + ++ G
Sbjct: 488 DNLRWELMEA-----GGVAAIRDVFERSKDVAMATYAKEEWDSDGESREGWRSVWRKWGG 542
Query: 174 -AGLNAQQLA----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
A L ++ +V L WRD +AR +DES YVL L+ +A + PT
Sbjct: 543 EAALGTEERKDVRDMKREERLVRVLHRWRDGVAREEDESPRYVLGASHLMMLATRAPTGR 602
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSM------QNAANFEVIAQKLKEERMEVASEET 276
+ + + +++ + + ++I + Q A + A LK + +
Sbjct: 603 EGVLACIPPNATGLKKRVDEIGALIAAEVQAWEQDQAAKKHTLSAALLKHSNDDDEDDVG 662
Query: 277 EVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPA--YTQLKQEPPKVGSSVAELDRN 334
+ + DT P+ ++ V A PH A ++ P V +V L +
Sbjct: 663 QAITRDTPQPTHTPSPAISAISTVAA------PHVDASIWSTTTDTRPSVRGAVRSLASS 716
Query: 335 GLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGF- 393
G + P A ++ + +T S L A PS R + A + A+K GF
Sbjct: 717 LFGRASTPTSAAVAKPQLSTTTSKL--------FGALSGPSTRAS-AQIDAVKA---GFV 764
Query: 394 ---GALLGN 399
GAL+GN
Sbjct: 765 DAVGALVGN 773
>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 847
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 9/221 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 309 ISTRQMDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDT 367
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 368 YKAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYLLHCYD 427
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNA 178
++ +L S EN+ L E VY S C +Y+K + Y + L G LN+
Sbjct: 428 QLRKRLLS----QENAANNLLEFVYNESAQTCLTVYKKPKFESDGYEKL--LVGRKPLNS 481
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+Q +A L +WRD AR DDES YVLP +++IA+ LP
Sbjct: 482 RQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLP 522
>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
Length = 796
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 15/295 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP+ KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 258 ISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIIWLQRDLGLYIVGLFDT 317
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L + SL YLL A K+YQ ADWR RPL E+ YAR DTH+LLYI+D
Sbjct: 318 FHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFD 377
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGA 174
M+ +L + S + +V + S + + YE + L + + A
Sbjct: 378 NMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRTPA 437
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+Q +V + EWRD + R +DES +++PN + +A+ +P+ L ++
Sbjct: 438 QFTREQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHVGH 497
Query: 235 YIERYMGPVLSIIKNSMQNAAN-------FEVIAQKLKEERM--EVASEETEVLV 280
+ ++ ++ + + A+ + IA + ER+ E A + EV+V
Sbjct: 498 ITRAHADELVGVVVEAKERGASGPELHEVLQAIADMQRAERVESETAPKTAEVVV 552
>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
Length = 807
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 137/257 (53%), Gaps = 7/257 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L +VF +P KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 265 ISTREKDWIVDTLQPWRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDT 324
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L SL YLL F +A+K+YQ ADWR+RPLP EML YAR DTHYLLYIYD
Sbjct: 325 FFACGQLNYPAKSLAYLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYD 384
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ +L + +++ + ++S + YE E + +I+
Sbjct: 385 RVRNELVAASDKTDADKDLIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKNSH 444
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+++Q +V L +WRD AR +DEST +VL NR + EIA+ P A L LL
Sbjct: 445 MAFDSEQFSVFRALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPLNA 504
Query: 234 SYIERYMGPVLSIIKNS 250
S + IK S
Sbjct: 505 SLARSRFNEIWGYIKES 521
>gi|295659299|ref|XP_002790208.1| exosome component 3'-5' exonuclease [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 827
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 140/259 (54%), Gaps = 19/259 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 271 ISTREQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
S L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHGSVALNYPKRSLKFLLEKFVNFKAEKKYQMADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 391 HIR---NSLVENSTPAHNLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHDML 442
Query: 176 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R +
Sbjct: 443 IRNSTLFSREQFAVFKAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLLRTI 502
Query: 230 KSKHSYIERYMGPVLSIIK 248
+ M ++ +IK
Sbjct: 503 SPVSPPVRARMSELVQVIK 521
>gi|401623674|gb|EJS41765.1| rrp6p [Saccharomyces arboricola H-6]
Length = 733
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 147/267 (55%), Gaps = 25/267 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDT++LR + L EVF DP+ KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 256 VSTRKKDYLVDTIELRENLH-ILNEVFTDPSIIKVFHGAFMDIIWLQRDLGLYIVSLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE--------------LLSENSYL 166
++ KL K L V S +V ++ +E + EN +
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSKVYSPIEKENPWR 426
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+ + + ++ +V L +WRDVIAR DDES +V+PN+ L + PT +
Sbjct: 427 VL--MYQYNIAPEREVLVKNLYQWRDVIARRDDESPRFVMPNQLLAALVAYTPTDVIGVV 484
Query: 227 RLLKSKHSYIERYMGPVLSIIKNSMQN 253
L ++ + + ++IKNS++N
Sbjct: 485 SLTNGVTEHVRQNANVLANLIKNSLRN 511
>gi|293332135|ref|NP_001169203.1| uncharacterized protein LOC100383056 [Zea mays]
gi|223975495|gb|ACN31935.1| unknown [Zea mays]
Length = 475
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 256/538 (47%), Gaps = 109/538 (20%)
Query: 140 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 199
L EV KRS ++C QLYEKE L++ SYLHI+GL+ LNA QL+V++ L WRD IARA+D
Sbjct: 16 LLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNATQLSVLSSLYRWRDGIARAED 75
Query: 200 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 259
ESTGY+LPN+TL+EIAK++P T+ KL+R++KS++S +ER + V++ I++++ + FE
Sbjct: 76 ESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILERNLNHVINNIRDAIAASGAFES 135
Query: 260 IAQKLKEERMEV--------ASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHP 311
I ++LK+ ++E +SE+TE++ N++ P+ V V VG
Sbjct: 136 IVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDPSDESAVVPAVITNVGAA---- 191
Query: 312 PAYT--------QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSG 363
P T L+ PK S A GL ++NK+ LS+
Sbjct: 192 PCITSEASLGNMHLEDPVPKTKDSGASSGFTGL-----------TDNKK------LSNDQ 234
Query: 364 QSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRK-----FDGEKKDKEAMKLEQ 418
Q + +A VQ K+P FGAL G F G + K+++
Sbjct: 235 Q------------QAAKATVQVSKRPT-AFGALFGKAAAGRRPDLFLGFSNVQGKTKVDK 281
Query: 419 IKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVS 478
I SSV LPFH F+ +L + LP S S + I+ S+
Sbjct: 282 ITSSVVLPFHH-FSGGAKL----------SSAALPAKESLHSEPDS---IQHSD------ 321
Query: 479 QSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSL 538
PA + E++I L+ DE++ P E+G+ +D MS
Sbjct: 322 ------PACQ--LEEVIQLDMGTDEQQ-----------PPENGNEDDG-HCETEDTEMSK 361
Query: 539 S---DLSTSFQECFHSANNNRKPGKPERSEEPSGF-LQLKPFDFEAARKQIEFGEDAKEK 594
S D S + Q F S N R + +++ F + + PFD+ ARK + E+
Sbjct: 362 SPSGDPSVTEQR-FRSLNEERNVKQNQKTPREFEFSVPVVPFDYAEARKNLVSSLPKAER 420
Query: 595 SAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKE----LSQGRRRSAFPATGNRSATF 648
+ ++GDK++ S +K G E RRR AFP +GNR+AT+
Sbjct: 421 RKDDAVARAINTDAGDKQRGS-----KKPPGGGENEGNFQHPRRRQAFPPSGNRNATY 473
>gi|392579689|gb|EIW72816.1| hypothetical protein TREMEDRAFT_70822 [Tremella mesenterica DSM
1558]
Length = 955
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 151/282 (53%), Gaps = 32/282 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D++VD +KLR ++ L V DP+ KV HG+ DI WLQ+DF I++ +FD
Sbjct: 334 ISTRERDYIVDAIKLRSELRRDKLGGVMVDPSIVKVFHGSQSDIPWLQQDFSIFVVGLFD 393
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL +SL LL +C +A+K YQ ADWR+RPLP+EM YAR DTH+LLYIY
Sbjct: 394 TFHATLVLNFPAHSLASLLKLYCNFDADKRYQLADWRIRPLPEEMEMYARADTHFLLYIY 453
Query: 120 DIMKIKL-----SSMP-----KESENSDT--------------PLTEVYKRSYDVCRQLY 155
D ++ L S +P KES+ SDT + E +RS +Y
Sbjct: 454 DKLRNALLDKSVSLLPTPVGDKESKTSDTAENGTVEEGHLAHSAMKETLERSAQTSLIMY 513
Query: 156 EKELLSENSYLHIYGLQGA-------GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+ E + G + A + + AV L WRD +AR +DES +VLPN
Sbjct: 514 QPNYYDEKTGRGSGGWREACSRWLPSSKDTEAGAVFKALHSWRDSLARNEDESPVWVLPN 573
Query: 209 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L+ ++KQ P+T +++++ + R+ +LS+I ++
Sbjct: 574 DKLVALSKQRPSTLFVVQKIIGNYSPLALRHAADILSVIAST 615
>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
Length = 738
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 160/290 (55%), Gaps = 23/290 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL L + L E+F +P KV+HGA+ DI+WLQRD G+Y+ ++FDT
Sbjct: 262 ISNREQDWIVDTLALHDDLRD-LNEIFANPAILKVLHGANMDIIWLQRDLGLYIVSLFDT 320
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L + SL YLL +F +K+YQ ADWR+RPL D M++YAR DTH+LL IYD
Sbjct: 321 YHASKKLGFPKFSLAYLLENFAHFKTSKKYQLADWRIRPLTDAMMQYARADTHFLLNIYD 380
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE---NSYLHIYGLQGA--- 174
++ KL + + + EV S V + +E + ++++H YG G
Sbjct: 381 QLRNKLLNAGQ------GKVQEVLYESRKVASRRFEFNSFKQDQTDNWMHSYGGMGQERW 434
Query: 175 -----GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL-PTTAAKLRRL 228
+ +++ +V L WRD +AR DEST Y++ N+ L ++ + P A+K+
Sbjct: 435 VMNQYNIEPERIEIVQALINWRDKVAREKDESTRYIMSNQVLANLSSLVAPVDASKVHNA 494
Query: 229 LKSKHSYIERYMGPVLSIIKNSM----QNAANFEVIAQKLKEERMEVASE 274
S++S + + + +I+ + +A N V + L E + ASE
Sbjct: 495 AGSQYSIVRQNSKELAELIEKYLATVGHSANNENVTSFDLTEVNYDKASE 544
>gi|402589191|gb|EJW83123.1| 3'-5' exonuclease [Wuchereria bancrofti]
Length = 822
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 128/221 (57%), Gaps = 9/221 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+++D L + L E F DP KV HGAD DIVWLQRDFGIY+ NMFDT
Sbjct: 309 ISTRQMDYIIDPFPLWNDMH-ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDT 367
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A RVL + S ++L+ C +K++Q ADWR+RPL YAR DTHYLL+ YD
Sbjct: 368 YKAMRVLNFSKFSYQHLVQTCCNHTLDKKFQKADWRLRPLTVAHKTYARSDTHYLLHCYD 427
Query: 121 IMKIKLSSMPKESENSDTPLTE-VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNA 178
++ +L EN+ L E VY S C +Y+K + Y + L G LN+
Sbjct: 428 QLRKRLLG----QENAANNLLEFVYNESAQTCLNVYKKPTFESDGYEKL--LVGRKPLNS 481
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+Q +A L +WRD AR DDES YVLP +++IA+ LP
Sbjct: 482 RQQFALAALWKWRDERARTDDESPQYVLPCHMMLQIAEVLP 522
>gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818]
Length = 848
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 141/250 (56%), Gaps = 10/250 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT DF++DTL LR + EV + V+HGAD DI+WLQRD G+Y+ +F
Sbjct: 306 VSTRTRDFLIDTLALRGHL-----EVLNECLC--VLHGADSDILWLQRDHGLYIVCLFVC 358
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A RVL + SL YLL H ++ +K +Q +DWR+RPLP +M YA+ DTHYLL +D
Sbjct: 359 LFAMRVLGYPKYSLAYLLKHLFHLSLDKRHQLSDWRIRPLPADMCVYAQADTHYLLDAHD 418
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+K +L + + +EN++ L V+ RS D+C Q YE E + +Y Q L +
Sbjct: 419 ALKAEL--LERGNENANL-LRSVFTRSTDICLQRYEVPKYDEEQAMRLYNRQSLALTPKG 475
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LA+ L WRD +AR +DES YV+ + L +A+ PT +++ + + + +
Sbjct: 476 LAIFRALHAWRDAVARREDESPRYVMEDHMLFSLARNAPTQPSQVFAICQPTPTLVRMNA 535
Query: 241 GPVLSIIKNS 250
++ I N+
Sbjct: 536 HTIIETITNA 545
>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 786
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 6/231 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP+ KV+HGA DIVWLQRD G+Y+ +FDT
Sbjct: 248 ISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLFDT 307
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L + SL YLL A K+YQ ADWR RPL E+ YAR DTH+LLYI+D
Sbjct: 308 FHAARALGYQAASLAYLLELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFD 367
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGA 174
M+ +L + S + +V + S + + YE + L + +
Sbjct: 368 NMRNELVNKSDFSNPEKNKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRTPV 427
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
QQ +V + EWRD + R +DES +++PN + +A+ +P+ L
Sbjct: 428 QFTRQQFSVFRAVHEWRDTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGL 478
>gi|425768291|gb|EKV06818.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
Pd1]
gi|425770373|gb|EKV08846.1| Exosome complex exonuclease Rrp6, putative [Penicillium digitatum
PHI26]
Length = 754
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 132/256 (51%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+V+DTL+ + L EVF DP KV+HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 265 ISTRGKDWVIDTLQPWREDLQILNEVFADPKILKVLHGSTMDIIWLQRDLGLYVVGMFDT 324
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR RPLP M YAR DTHYLLYIYD
Sbjct: 325 FHAASALGFPKRSLKFLLSKFVNFEADKRYQTADWRARPLPPAMFDYARSDTHYLLYIYD 384
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGA 174
++ + + S + + V +RS Q YE+ + + +
Sbjct: 385 RLR---NDLIDNSTEEASHIDYVNERSKHEALQRYERPVYDAVNGHGPGGWYDLLWRNSG 441
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
L +Q AV + +WRD +ARA+DE V P L ++A +P L R L
Sbjct: 442 NLPKEQFAVFKAVHQWRDEVARAEDEGWQCVFPKHMLFKLATIMPLDMGSLFRTLSPMTP 501
Query: 235 YIERYMGPVLSIIKNS 250
+ +L +IK +
Sbjct: 502 IAKERSHDLLEVIKQA 517
>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans CBS 6340]
Length = 735
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 148/268 (55%), Gaps = 21/268 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DT+ LR + L EVF DP KV+HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 258 ISTREKDWLIDTIALRDDLW-ILNEVFTDPKITKVLHGAFMDIIWLQRDLGLYIVSLFDT 316
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR+L ++SL YLL + +K+YQ +DWRVRPLP + YAR DTH+LL IYD
Sbjct: 317 YHASRLLGSPKHSLAYLLERYAHFKTSKKYQLSDWRVRPLPKALKAYARADTHFLLNIYD 376
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL-HIYG--------- 170
M+ L K L++V S +V ++ +E H++
Sbjct: 377 NMRNSLIEQNK--------LSQVLHDSRNVAKRRFEFTTFRPKIVTSHVFSPIEREDPWR 428
Query: 171 --LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + +V L EWRD++AR DDES YV+PN+ L+ +A PTT A +
Sbjct: 429 TLMFQYNIPQSKSLLVRRLYEWRDMVARRDDESPRYVIPNQLLVSLAVNAPTTPALIMAT 488
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQNAAN 256
+I + + +IK S+++++N
Sbjct: 489 STFVTEHIRQNAKSLALLIKKSLESSSN 516
>gi|408396401|gb|EKJ75559.1| hypothetical protein FPSE_04202 [Fusarium pseudograminearum CS3096]
Length = 1034
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 137/257 (53%), Gaps = 7/257 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L +VF +P KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 492 ISTREKDWIVDTLQPWRHKLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDT 551
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L SL YLL F +A+K+YQ ADWR+RPLP EML YAR DTHYLLYIYD
Sbjct: 552 FFACGQLNYPAKSLAYLLSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYD 611
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS-------YLHIYGLQG 173
++ +L + +++ + ++S + YE + + +I+
Sbjct: 612 RVRNELVAASDKTDADKDLIGRALEKSREQSLSRYEHPDYDQETGEGSRGWSSYIFKNSH 671
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+++Q +V L +WRD AR +DEST +VL NR + EIA+ P A L LL
Sbjct: 672 MAFDSEQFSVFRALWKWRDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPLNA 731
Query: 234 SYIERYMGPVLSIIKNS 250
S + IK S
Sbjct: 732 SLARSRFNEIWGYIKES 748
>gi|440292006|gb|ELP85248.1| exosome complex exonuclease RRP6, putative [Entamoeba invadens IP1]
Length = 517
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 146/252 (57%), Gaps = 12/252 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+EDFVVD + LR + L E F +P +KV HG D D+VWL +FG+Y+ N FD+
Sbjct: 229 ISTRSEDFVVDVITLRDSIH-LLNEPFTNPKIEKVFHGCDFDMVWLSYNFGLYVVNNFDS 287
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R LKL+ SL++LL + GV A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D
Sbjct: 288 GQAARCLKLQHFSLKFLLEKYVGVEADKKYQLADWRIRPLTQEMINYARGDTHYLLYICD 347
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+M+ E + L EV +S ++C +L++ + ++ + I + + + Q
Sbjct: 348 LMR-------NECLEQNV-LYEVQAKSNELCLRLFKPTIYNDAAVERI--AKKSWIKKSQ 397
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IERY 239
L RD IAR +DES ++ L I ++PT KL+ K Y +E +
Sbjct: 398 FKAFKKLFLLRDKIAREEDESPHSIMSQSVLNSILSEVPTDFEKLKMACLPKIPYFVEMH 457
Query: 240 MGPVLSIIKNSM 251
+++++K M
Sbjct: 458 SMEIINLMKEEM 469
>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 826
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 139/259 (53%), Gaps = 19/259 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 271 ISTRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
S L + SL++LL F A K YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHGSVALNYPKRSLKFLLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 391 HIR---NSLVENSTPAHKLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHDVL 442
Query: 176 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R +
Sbjct: 443 IRNSTLFSREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTI 502
Query: 230 KSKHSYIERYMGPVLSIIK 248
+ M ++ +IK
Sbjct: 503 SPVSPPVRARMSELVQVIK 521
>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
Length = 807
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT
Sbjct: 272 ISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 332 YHAAVALNYPKKSLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 392 QIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNST 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P L R +
Sbjct: 449 LFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSP 508
Query: 235 YIERYMGPVLSIIKNS 250
+ ++ +IK +
Sbjct: 509 LVRARASELVQVIKQA 524
>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
Length = 827
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 139/259 (53%), Gaps = 19/259 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ DI+WLQRD G+Y+ +FDT
Sbjct: 271 ISTRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
S L + SL++LL F A K YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 331 YHGSVALNYPKRSLKFLLEKFVNFKAEKIYQMADWRLRPLLPGMFDYARSDTHYLLYIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ +S+ + S + + V ++S Q YE+ + + + G G G
Sbjct: 391 HIR---NSLVENSTPAHKLVDYVLEKSRQEALQRYERPVYNAET-----GEGGGGWHDVL 442
Query: 176 ------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+ +Q AV + +WRD +AR++DE Y+L ++L +IA +P A L R +
Sbjct: 443 IRNSTLFSREQFAVFRAVHQWRDKLARSEDEGVQYILSKQSLFKIAHAMPLDPASLFRTI 502
Query: 230 KSKHSYIERYMGPVLSIIK 248
+ M ++ +IK
Sbjct: 503 SPVSPPVRARMSELVQVIK 521
>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
Length = 1027
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 151/285 (52%), Gaps = 26/285 (9%)
Query: 1 MSLRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+++DTL V Q L F +P K KV+HGA+ D++WLQRD G+YL N+FD
Sbjct: 384 LSTRWGDWIIDTLSDDVRQHAELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLFD 443
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LL+IY
Sbjct: 444 TYHATNVLMFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFIY 503
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQG- 173
D ++ +L E+ D + +V+ RS V Y KE + + ++ G
Sbjct: 504 DNLRHEL----MEAGGIDA-IRQVFIRSKQVATATYAKEQWDTDGETREGWRTVWRKWGG 558
Query: 174 -AGLNAQQLA----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
A L + +V L WRD +AR +DES Y+L L+ +A + PTT
Sbjct: 559 EAALGTEHRKEVSQMKKEERLVRALHRWRDTVAREEDESPRYILGANNLMMLAARAPTTK 618
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE 267
+ + + +++ + + S+I M A+++ Q ++E
Sbjct: 619 QGVLACIPPNATGLKKRIDELASLI---MAEVADWQKDQQARRDE 660
>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
Length = 807
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT
Sbjct: 272 ISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 332 YHAAVALNYPKKSLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 392 QIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNST 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P L R +
Sbjct: 449 LFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSP 508
Query: 235 YIERYMGPVLSIIKNS 250
+ ++ +IK +
Sbjct: 509 LVRARASELVQVIKQA 524
>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 977
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 140/244 (57%), Gaps = 26/244 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED+++DT+ L +G L VF +P KV HG D DI+WLQRDF IY+ N+FDT
Sbjct: 166 ISTQKEDYLLDTIALHDAMG-ILGAVFANPKICKVFHGGDNDILWLQRDFHIYVVNLFDT 224
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV+ NK Q DWR RPLP EML+YA D HYLLYI
Sbjct: 225 AKACEVLSKPQKSLAYLLETYCGVSTNKLLQREDWRQRPLPAEMLQYALTDAHYLLYIAS 284
Query: 121 IMKIKLSSMPKESENS----DTPL---TEVYKRSYDVCRQLYEKE------------LLS 161
+ +L K+++NS D L E +RS +C QLY KE L S
Sbjct: 285 CLIAELKQ--KDNDNSYSYPDVKLKFILEASRRSNMICMQLYTKEVEEFPGDAAASSLFS 342
Query: 162 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
YL+ G G+ ++ + +V LC WR+++AR DE +VL ++ ++ +A ++ T
Sbjct: 343 R--YLNDQG--GSSVSCEIQDLVRRLCTWRELMARVHDEGLRFVLSDQAIVSLANKVSTN 398
Query: 222 AAKL 225
A ++
Sbjct: 399 AMEI 402
>gi|378728924|gb|EHY55383.1| exosome complex exonuclease Rrp6 [Exophiala dermatitidis
NIH/UT8656]
Length = 820
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 127/224 (56%), Gaps = 3/224 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTLK + L EVF D KV HG++ DI+WLQRD G+Y+ +FDT
Sbjct: 262 ISTRDKDWIIDTLKPWRENLQILNEVFADTKILKVFHGSNMDIIWLQRDLGLYVVGLFDT 321
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L+ L++LLH F A K+YQ ADWRVRPLP E++ YAR DTH+LL IYD
Sbjct: 322 YHACCALQFPGKGLKHLLHQFANFEAQKQYQTADWRVRPLPRELIDYARSDTHFLLNIYD 381
Query: 121 IMKIKLSSMPKESEN-SDTPLTEVYKRSYDVC-RQLYEKELLSENSYLHIYGLQ-GAGLN 177
++ L ++N +D LT+ K + R +Y+ E LQ +
Sbjct: 382 NLRNMLIERSTPNDNLTDFVLTQSKKEALQTYERSVYDMESGRGPLGWLGLLLQRTVRFD 441
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
+Q V + EWRD AR DE YVLPNR L +IA+ +PT+
Sbjct: 442 NEQFGVFRAVHEWRDRKARELDEGLQYVLPNRVLWQIAETMPTS 485
>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
Length = 890
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 126/200 (63%), Gaps = 7/200 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S +D+++D L LR ++ L EVF T K+ HGAD+DI WLQRD +Y+ NMFDT
Sbjct: 299 ISTEDKDYLIDALALRDKLS-ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDT 357
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA++ L+ SL +L+ FC V NK++Q ADWR+RPLPDE+ YAREDTHYL+YIY
Sbjct: 358 HQAAKALQYPALSLAFLMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYK 417
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+MK +L ++ D L V +RS +VC++ Y K +L E+S+L +Y + +Q
Sbjct: 418 MMKRELLH---KTNKCDKLLRSVIERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDNRQ 474
Query: 181 LAVVAGLCEWRDVIARADDE 200
+ + L E +I +A ++
Sbjct: 475 M---SHLLELHQIILKAREQ 491
>gi|365985620|ref|XP_003669642.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
gi|343768411|emb|CCD24399.1| hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
Length = 790
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 23/264 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VDTLKLR + P L E F +P KV+HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 277 ISTRTQDYIVDTLKLRSHLQP-LNEPFTNPQITKVLHGAFMDIIWLQRDLGLYIVSLFDT 335
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L +NSL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I+D
Sbjct: 336 FHASRALGFPKNSLAYLLEKFSNFKTSKKYQMADWRIRPLSKAMNSYARSDTHFLLNIFD 395
Query: 121 IMKIKL------SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 174
M+ KL + + KES N V KR ++ + Y + S Y I +
Sbjct: 396 QMRNKLVQDGKLAGVLKESRN-------VAKRRFEYVK--YRPLITSSAVYSPIEKIDPW 446
Query: 175 GLNAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
Q + + L +WRD IAR DDES Y++PN+ L+ + P A +
Sbjct: 447 KTLMYQYNIPLAKELLLKELYQWRDKIARRDDESPRYIMPNQLLVSLVAYAPVEPAGVVS 506
Query: 228 LLKSKHSYIERYMGPVLSIIKNSM 251
+ ++ + ++IKN +
Sbjct: 507 VSNMVTDHVRSNSKILANLIKNCL 530
>gi|389740502|gb|EIM81693.1| hypothetical protein STEHIDRAFT_171972 [Stereum hirsutum FP-91666
SS1]
Length = 910
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 148/301 (49%), Gaps = 56/301 (18%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R ED++VD +LR ++ L EVF DP K+ HGA+ D+ WLQ+DF +Y+ N+FDT
Sbjct: 283 ISSREEDWIVDPFELRDEMED-LNEVFTDPKIVKIFHGAESDVAWLQQDFNLYIVNLFDT 341
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+VL R+ L LL +C A+K YQ ADWRVRPLP EML YAR DTH+LLYIYD
Sbjct: 342 FHASKVLDFPRHGLASLLEMYCDFTADKRYQLADWRVRPLPQEMLEYARSDTHFLLYIYD 401
Query: 121 IMKIKLSSM-------------------------PKESENSDTP------LTEVYKRSYD 149
++ L P + + P + EV RS +
Sbjct: 402 NLRNALLDRFLSRSQSRAQSPQSSSTPPPPSTINPSSTVTALIPPGPDGYVREVLSRSAE 461
Query: 150 VCRQLYEKELLSENSYLHIYGLQGAG------LNAQQLAVVA------------GLCEWR 191
++YE+E Y + G G G ++A+VA + WR
Sbjct: 462 TSLRVYERE------YYDVEGGSGPGGWDTMAKKWNKVALVADGPGGVQREVYRAVHAWR 515
Query: 192 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 251
D AR +DES YVL N + ++A++ P A L + S I R +L I+ ++
Sbjct: 516 DRTAREEDESVRYVLANHFVFQLAERPPNDMAALLHMFHSVPPVIRRRAKELLDCIRVAL 575
Query: 252 Q 252
+
Sbjct: 576 K 576
>gi|154278361|ref|XP_001539994.1| exosome component 3'-5' exonuclease [Ajellomyces capsulatus NAm1]
gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 807
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 138/256 (53%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT
Sbjct: 272 LSTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 332 YHAAVALNYPKKSLKFLLEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 392 HIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRNST 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q AV + +WRD IAR +DE YVL ++L +IA +P L R +
Sbjct: 449 LFSREQFAVFRAVHQWRDKIARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSP 508
Query: 235 YIERYMGPVLSIIKNS 250
+ ++ +IK +
Sbjct: 509 LVRARASELVQVIKKA 524
>gi|367005124|ref|XP_003687294.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
gi|357525598|emb|CCE64860.1| hypothetical protein TPHA_0J00370 [Tetrapisispora phaffii CBS 4417]
Length = 743
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 150/274 (54%), Gaps = 33/274 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT+ LR ++ L VF DP K++HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 253 ISTRNTDYLVDTIALRDKLQ-VLNVVFTDPKITKILHGAFMDIIWLQRDLGLYIVSLFDT 311
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R+SL YLL F +K+YQ ADWR RPL M YAR DTH+LL I+D
Sbjct: 312 YHASRALGFPRHSLAYLLERFAHFKTSKQYQLADWRTRPLSKAMNAYARADTHFLLNIFD 371
Query: 121 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------------ 162
I + KL+SM ES +V KR ++ + Y+ L S
Sbjct: 372 QLRNMLIQEDKLASMLHESR-------KVAKRRFEYSK--YKPTLPSSAVFSPTESDMPW 422
Query: 163 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
S ++ Y + +Q++ +V L EWRD IAR DDES Y++PN+ + + + +PT
Sbjct: 423 RSMIYQYNIP-----SQKVELVKRLWEWRDTIARRDDESPRYIMPNQLIASLVEYVPTNP 477
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
A + + + + + ++IK+++++ N
Sbjct: 478 AGVISVNRMMTDPVRSNAKAIANLIKSTLEDMKN 511
>gi|444314737|ref|XP_004178026.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
gi|387511065|emb|CCH58507.1| hypothetical protein TBLA_0A07170 [Tetrapisispora blattae CBS 6284]
Length = 771
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 31/240 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDT+ LR + L E+F +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 281 ISTREQDYIVDTISLRDDLI-VLNEIFTNPNITKVFHGASMDIIWLQRDLGLYIVSLFDT 339
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L L R+SL YLL ++ +K+YQ ADWR RPL + ML YAR DTH+LL I+D
Sbjct: 340 FHASKALGLARHSLAYLLENYASFKTSKKYQLADWRRRPLTNNMLAYARSDTHFLLNIFD 399
Query: 121 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCR-----------QLYEKELLSEN 163
I + KL+ + ES N V KR ++ + L EKE
Sbjct: 400 QLRNTLIKQNKLAGVLHESRN-------VAKRRFEYLKFRPTVPLPNLYTLIEKE-APWK 451
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
S L Y +Q ++ +V L EWRD+IAR DDES Y++P + LI + PT ++
Sbjct: 452 SLLIQYNIQD-----EKEILVQKLWEWRDMIARRDDESPRYIMPTQVLISLISYTPTDSS 506
>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 746
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 148/266 (55%), Gaps = 23/266 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF+VDTL LR ++ L EVF DP KV+HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 255 ISTRKEDFLVDTLALRDELH-ILNEVFADPNILKVLHGAFMDIIWLQRDLGLYVVSLFDT 313
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R+SL YLL + +K+YQ ADWRVRPL M YAR DTH+LL IYD
Sbjct: 314 YHASRALGFPRHSLAYLLEKYANFKTSKKYQLADWRVRPLSKPMHAYARADTHFLLNIYD 373
Query: 121 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG---- 170
I + KL+ + ES N V KR ++ R + ++ S + I
Sbjct: 374 QIRNQLIRENKLAEVLFESRN-------VAKRRFEYSR--FRPKVPSPAVFTPIEKEEPW 424
Query: 171 ---LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + + ++ ++ + EWRD+IAR DDES Y++PN+ +I + + P A +
Sbjct: 425 RTLVYQYNVPSTKIELLKRIWEWRDMIARRDDESPRYIMPNQLMISLVEYTPIDPAGVIS 484
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQN 253
+ ++ + ++IK S+++
Sbjct: 485 VSNVMTDHVRSNSKVIANLIKKSLED 510
>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
Length = 671
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 9/256 (3%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTLK + L EVF DP KV+HG+ D++WLQRD G+Y+ +FDT
Sbjct: 272 ISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDT 331
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWR+RPL M YAR DTHYLLYIYD
Sbjct: 332 YHAAVALNYPKKSLKFLLEKFANFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYD 391
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS------YLHIYGLQGA 174
++ + + + S S+ + V +RS Q YE+ + + + + +
Sbjct: 392 QIR---NDLIEHSTPSNNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLIRNST 448
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
+ +Q AV + +WRD IAR++DE YVL ++L +IA +P L R +
Sbjct: 449 LFSREQFAVFRAVHQWRDKIARSEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSP 508
Query: 235 YIERYMGPVLSIIKNS 250
+ ++ +IK +
Sbjct: 509 LVRARASELVQVIKQA 524
>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
Length = 760
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 11/229 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +D+++DT+ L +G LR VF + + K+ HGAD D++WLQRDF IY+ NMFDT
Sbjct: 56 ISTQNDDYLIDTIALHDVMG-ILRPVFANSSICKIFHGADNDVLWLQRDFHIYVVNMFDT 114
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A L + SL YLL +C V +K Q DWR+RPL EM+ YAR D HYLLYI +
Sbjct: 115 AKACETLSKPQKSLAYLLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIAN 174
Query: 121 IMKIKLSSMPKE-SENSDTPLTEVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGA 174
+ +L + + S + E RS VC QLY KE+ S + + LQ
Sbjct: 175 CLASELHAKACDTSSDKINFFFEASHRSNMVCMQLYAKEIECPPGASSAASILSRNLQTH 234
Query: 175 GLNAQQLA----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
GL++++ + +V C WRD++AR DES YVL ++ + +A LP
Sbjct: 235 GLDSKKSSEVKDLVWKFCAWRDLMARMHDESLRYVLSDQAIAALAVSLP 283
>gi|448519311|ref|XP_003868060.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis
Co 90-125]
gi|380352399|emb|CCG22625.1| Rrp6 nuclear exosome exonuclease component [Candida orthopsilosis]
Length = 814
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 186/366 (50%), Gaps = 66/366 (18%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L ++F DP KV+HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 315 ISNREKDWIIDTLVLRGDLSA-LNKIFTDPKIIKVLHGAFMDIIWLQRDLGLYIVSLFDT 373
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYI+D
Sbjct: 374 YHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTHFLLYIFD 433
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL---LSEN-------------- 163
++ KL K L V S V ++ +E LS N
Sbjct: 434 QLRNKLIDSDK--------LARVLFDSRQVAKRRFEYTKFRPLSSNLGSKVSCPVMAANP 485
Query: 164 -----SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-Q 217
S ++ Y + A + VV L +WRD+IAR +DES Y++PN+ L+ +A +
Sbjct: 486 NEPWGSLMYQYNVP-----AFKRPVVEQLYKWRDLIARQEDESVRYIMPNQLLVSLATLE 540
Query: 218 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
P A K+ + SY+ + + N+ + A E+I Q LKE SE+ +
Sbjct: 541 SPVDAGKVLNV----PSYVSEH------VRLNARELA---ELIDQTLKE------SEQND 581
Query: 278 VLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLG 337
++D +N V + VD ++A+ G QL Q K+ + + L+ N
Sbjct: 582 WAIVDKWNNQSTVQVEEQKVD-IEAVNGLL-------DQLLQNSAKLFTEDSLLNNN--S 631
Query: 338 SFAHPG 343
S A PG
Sbjct: 632 SVAIPG 637
>gi|443898900|dbj|GAC76233.1| exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100
[Pseudozyma antarctica T-34]
Length = 917
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 153/295 (51%), Gaps = 25/295 (8%)
Query: 1 MSLRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+++DTL V Q L F P K KV+HGA+ D++WLQRD G+YL N+FD
Sbjct: 385 LSTRWGDWIIDTLSDEVRQHAELLNSAFTHPDKVKVLHGANHDVLWLQRDLGLYLVNLFD 444
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL + L YL+ +C +A+K YQ ADWR+RPLP EML YAR DTH LLYIY
Sbjct: 445 TYHATNVLLFPSHGLNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLYIY 504
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE--------NSYLHIYGL 171
D ++ +L E+ D + +V+ RS +V Y KE S +G
Sbjct: 505 DNLRHEL----MEAGGVDA-IRDVFVRSKEVAMATYAKEEWDAEGETREGWRSVWRKWGG 559
Query: 172 QGA---------GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
+ A G ++ +V L WRD +AR DES Y+L L+ +A + PT
Sbjct: 560 EAALGTEERREVGQMKREERLVRALHRWRDGVAREQDESPRYILGANNLMMLAARAPTKV 619
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
+ + + +++ + +I +Q A + +K +E R+ +A+ T+
Sbjct: 620 EGVLACIPPNAAQLKKRAAELAQLIAKEVQ--AWQKDHDEKSEERRIRIAASLTK 672
>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
Length = 500
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 110/161 (68%), Gaps = 4/161 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++DTL+LR ++ L E F DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 329 ISTREEDFIIDTLELRSEMY-ILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L L RNSL++LL +C V+++K YQ ADWR+RPLPDEML+YA+ DTHYLLY+YD
Sbjct: 388 HHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYD 447
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 161
++ L T + +V+ +S D+ + Y K + +
Sbjct: 448 RVRADLFD---GGNGQATLIQQVWTKSRDLSLKKYVKPIFT 485
>gi|365763245|gb|EHN04775.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 733
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 162/307 (52%), Gaps = 32/307 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI------ 168
I KL+ + ES N V KR ++ + Y S Y I
Sbjct: 375 QLRNKLIESNKLAGVLYESRN-------VAKRRFEYSK--YRPLTXSSEVYSPIEKESPW 425
Query: 169 -YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 426 KILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
Query: 286 NLKIPNV 292
+I +V
Sbjct: 539 VPQIRDV 545
>gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
Length = 849
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 129/237 (54%), Gaps = 23/237 (9%)
Query: 1 MSLRTEDFVVDTLKLRV-QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D++VDTL V + L F P K V+HGAD DI+WLQRD G+Y+ N+FD
Sbjct: 292 ISTRWGDWIVDTLVDEVRESAELLNTAFTHPDKVLVLHGADHDILWLQRDLGLYVTNLFD 351
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T QA+R L+ SL +LL + A+K +Q ADWR+RPLP EML YAR DTH LLY+Y
Sbjct: 352 TFQAARALQFGALSLAFLLLRYTNFEADKRFQTADWRIRPLPREMLFYARSDTHALLYVY 411
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE-----NSYLHIYGLQGA 174
D ++ +L + EV+ RS ++Y KE E + ++ G
Sbjct: 412 DCLRNELL-----QRGGPLAVKEVFDRSKPTASKVYAKEPWDERGNSRGGWKSLWIRMGG 466
Query: 175 GL-NAQQLA-----------VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L A Q A +V L WRD +AR +DES +V+P R LI++A + P
Sbjct: 467 DLARASQDAPPDAPLGREERIVRRLHHWRDQVARKEDESPAFVMPPRVLIQLALRPP 523
>gi|367017047|ref|XP_003683022.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
gi|359750685|emb|CCE93811.1| hypothetical protein TDEL_0G04440 [Torulaspora delbrueckii]
Length = 735
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 134/235 (57%), Gaps = 27/235 (11%)
Query: 1 MSLRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
+S R D+++DT+ LR +Q+ L EVF +P KV HGA DI+WLQRD G+Y+ ++F
Sbjct: 254 ISTRERDYLIDTIALRDDLQI---LNEVFANPKILKVFHGAFMDIIWLQRDLGLYVVSLF 310
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
DT ASR + L R+SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 311 DTFHASRAIGLPRHSLAYLLEKFANFKTSKKYQLADWRLRPLSKAMNAYARADTHFLLNI 370
Query: 119 YD------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---- 168
YD I + KL+ + ES N V KR ++ + + S Y I
Sbjct: 371 YDQLRNTLIEQNKLAGVLAESRN-------VAKRRFEYSK--FRPIAPSPTVYCPIDKPD 421
Query: 169 ---YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+ ++ + +V L +WRD IAR DDES YV+PN+ L+E+A+Q PT
Sbjct: 422 PWKVLMFQYSISPNREELVKKLYDWRDTIARRDDESPRYVMPNQLLVELARQAPT 476
>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1278
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 137/261 (52%), Gaps = 28/261 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VD LKLR ++G L VF DP KV HG+D D++WLQRD G+YL NMFDT
Sbjct: 357 LSTREQDYIVDPLKLRGEMG-RLLPVFSDPNIVKVFHGSDSDVLWLQRDLGLYLVNMFDT 415
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+R L L L +LL FC +K++Q +DWR+RPLP +ML + D
Sbjct: 416 GQAARQLGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLPADML------------LID 463
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ E D + V S ++C + +EK E + + QG
Sbjct: 464 L----------ERSGGDVAVKAVLDASREICLRRFEKPAFQEKGWSEVLKRQGGNGVLDD 513
Query: 181 LA-----VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 235
V++ L WRD+IARA+DES GYV+ +I +A++ P++ L
Sbjct: 514 FGDVPRRVLSALWSWRDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPRL 573
Query: 236 IERYMGPVLSIIKNSMQNAAN 256
++++ +L I++N+ +A
Sbjct: 574 VQQHAEDILEIVENAKDESAG 594
>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
Length = 733
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 164/307 (53%), Gaps = 32/307 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSYLH 167
++ KL K L V S +V ++ +E E+ S + S
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWK 426
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 427 ILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
Query: 286 NLKIPNV 292
+I +V
Sbjct: 539 VPQIRDV 545
>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
gi|14195186|sp|Q12149.1|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
Full=Ribosomal RNA-processing protein 6
gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
Length = 733
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 164/307 (53%), Gaps = 32/307 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSYLH 167
++ KL K L V S +V ++ +E E+ S + S
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWK 426
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 427 ILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
Query: 286 NLKIPNV 292
+I +V
Sbjct: 539 VPQIRDV 545
>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
Length = 733
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 164/307 (53%), Gaps = 32/307 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSYLH 167
++ KL K L V S +V ++ +E E+ S + S
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWK 426
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 427 ILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVXGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
Query: 286 NLKIPNV 292
+I +V
Sbjct: 539 VPQIRDV 545
>gi|353243741|emb|CCA75245.1| related to nucleolar 100K polymyositis-scleroderma protein
[Piriformospora indica DSM 11827]
Length = 847
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 182/374 (48%), Gaps = 56/374 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R +D+VVD L ++ L EVF DP KV+HGA+ DIVWLQ +F +Y+ N+FD
Sbjct: 281 VSNRQQDWVVDCLVPEIRANLEILNEVFTDPNIVKVLHGAESDIVWLQENFHLYIVNLFD 340
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T ASR L+L R+SL +LL +C A+K YQ ADWR+RPLP EML YAR DTH+LL+IY
Sbjct: 341 TFHASRALELPRHSLAFLLSAYCDFTADKRYQLADWRIRPLPAEMLHYARSDTHFLLFIY 400
Query: 120 DIMKIKLSSMPKESENSDTPLTE-----------VYKRSYDVCRQLYEKELLSEN-SYLH 167
D ++ ++ ++ +N TP E +R Q +E + E +
Sbjct: 401 DQLR---EALLEKGKNPSTPPAEDAPPLSDPQLRYIRRVLSNSAQTSLREFVRERYDAVE 457
Query: 168 IYGLQG-AGL----NAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
G++G AGL N + L V + WRD +AR +DES +V+ N+ L+ +
Sbjct: 458 GTGMRGWAGLLKKWNRRSLLVPGVERNIFLAVHAWRDRVAREEDESPVFVISNQLLLSLM 517
Query: 216 -KQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS-------MQNAANFEVIAQKLKEE 267
K +P L + G V S+I+ MQ+AA + A K
Sbjct: 518 EKPVPVNLTAL----------FASFPGSVPSLIRKRGAELLKVMQDAAVAPIDAAK---- 563
Query: 268 RMEVASEETEVLVLDTSSN---LKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKV 324
ME E + ++ D ++N +P+ + +VG P P + +
Sbjct: 564 -MEPMLLEEDAIIFDATANAITTDLPSHTLPPSQSIVPVVGLWEPTKPPI--IAKRSTLF 620
Query: 325 GSSVAELDRNGLGS 338
G + + D G G+
Sbjct: 621 GGKLGDTDSQGAGA 634
>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
Length = 733
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 163/312 (52%), Gaps = 42/312 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 ------IMKIKLSSMPKESENSD------------TPLTEVYKRSYDVCRQLYEKELLSE 162
I KL+ + ES N TP +EVY EKE
Sbjct: 375 QLRNKLIESNKLAGVLYESRNVAKRRFGYSKYRPLTPSSEVYSP--------IEKE---- 422
Query: 163 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
S I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT
Sbjct: 423 -SPWKILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDV 480
Query: 223 AKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LV 280
+ L ++ + + ++I+++++N N EE + S ET+ ++
Sbjct: 481 IGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGIL 533
Query: 281 LDTSSNLKIPNV 292
L+T S +I +V
Sbjct: 534 LETISVPQIRDV 545
>gi|349581166|dbj|GAA26324.1| K7_Rrp6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 733
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 160/300 (53%), Gaps = 32/300 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSYLH 167
++ KL K L V S +V ++ +E E+ S + S
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWK 426
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 427 ILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
>gi|242039749|ref|XP_002467269.1| hypothetical protein SORBIDRAFT_01g022350 [Sorghum bicolor]
gi|241921123|gb|EER94267.1| hypothetical protein SORBIDRAFT_01g022350 [Sorghum bicolor]
Length = 284
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 25/194 (12%)
Query: 99 PLPDEMLRYAREDTHYLLYIY--DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE 156
P ++ YAREDTHYLLYIY D+M+ +L +ES + L EV+KRS ++C Q YE
Sbjct: 2 PFLVDIKMYAREDTHYLLYIYSYDLMRQRLQ---RESTFENDLLLEVHKRSNEICLQFYE 58
Query: 157 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI-- 214
KELL++ SYLHIYGLQ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ + +
Sbjct: 59 KELLTDTSYLHIYGLQEHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKAFLLLWC 118
Query: 215 ------------------AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
AKQ+PT L+R++KSK Y+E + + + N+++ +
Sbjct: 119 KIRYATSLTPPPLFFNSKAKQMPTDVGHLKRIVKSKCPYVESNLELIAYTVWNALKYSYA 178
Query: 257 FEVIAQKLKEERME 270
FE IA++LK+ER+E
Sbjct: 179 FEGIAEQLKKERLE 192
>gi|392296333|gb|EIW07435.1| Rrp6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 733
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 160/300 (53%), Gaps = 32/300 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSYLH 167
++ KL K L V S +V ++ +E E+ S + S
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWK 426
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I Q + ++ +V L +WRD++AR DDES +V+PN+ L + PT +
Sbjct: 427 ILMYQ-YNIPPEREVLVRELYQWRDLVARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
Length = 745
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 21/264 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R++D++VDT+ LR + L +F DPT KV HGA D++WLQRD G+Y+ ++FDT
Sbjct: 256 ISSRSKDWLVDTIALRDDLH-VLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L ++SL YLL F +K+YQ ADWRVRPLP + YAR DTH+LL IYD
Sbjct: 315 YHASRALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYG----- 170
++ L K L EV S +V ++ +E + N Y I
Sbjct: 375 DLRNALVKAGK--------LAEVLNASRNVAKRRFEYTSFRPRIPDSNVYSPIESTEPWR 426
Query: 171 --LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ L + ++ L EWRD +AR DDES YV+PN+ L+ + P+ A + +
Sbjct: 427 KLMYQYNLPPSKEPLLKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSV 486
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQ 252
Y+ + ++IK +++
Sbjct: 487 STYVTDYVRSNARTLANLIKRTLE 510
>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
Length = 741
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 142/269 (52%), Gaps = 23/269 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL LR + L EVF +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 255 VSTRQTDYLVDTLALRDDLV-VLNEVFANPLIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 313
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R+SL YLL F +K+YQ ADWRVRPL M YAR DTH+LL IYD
Sbjct: 314 YHASRALGFPRHSLAYLLETFASFKTSKKYQLADWRVRPLSKAMSAYARADTHFLLNIYD 373
Query: 121 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA 174
I++ KL+ + ES N V KRS+ + Y ++ + + Y + G
Sbjct: 374 QLRNKLIIENKLAGVLAESRN-------VAKRSFQYSK--YRPKVPNSSVYSPVDRADGW 424
Query: 175 GLNAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ Q + V L EWRD IAR DDES YV+PN+ L + P +
Sbjct: 425 KVLMNQYNIPLEKEILVKNLYEWRDTIARRDDESPRYVMPNQLLAYLVDYTPLDPTGVIS 484
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
+ + ++ + ++I S+Q A+
Sbjct: 485 VSPTVTDHVRTNAKALANLIVKSLQQIAD 513
>gi|374106609|gb|AEY95518.1| FACL001Cp [Ashbya gossypii FDAG1]
Length = 745
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 21/264 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R++D++VDT+ LR + L +F DPT KV HGA D++WLQRD G+Y+ ++FDT
Sbjct: 256 ISSRSKDWLVDTIALRDDLH-VLNVIFTDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L ++SL YLL F +K+YQ ADWRVRPLP + YAR DTH+LL IYD
Sbjct: 315 YHASRALGFPKHSLAYLLETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSENSYLHIYG----- 170
++ L K L EV S +V ++ +E + N Y I
Sbjct: 375 DLRNALVKAGK--------LAEVLNASRNVAKRRFEYTSFRPRIPDSNVYSPIESTEPWR 426
Query: 171 --LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ L + ++ L EWRD +AR DDES YV+PN+ L+ + P+ A + +
Sbjct: 427 KLMYQYNLPPSKEPLLKKLYEWRDTVARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSV 486
Query: 229 LKSKHSYIERYMGPVLSIIKNSMQ 252
Y+ + ++IK +++
Sbjct: 487 STYVTDYVRSNARTLANLIKRTLE 510
>gi|346326755|gb|EGX96351.1| exosome complex exonuclease Rrp [Cordyceps militaris CM01]
Length = 852
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 15/240 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L EVF DP+ KV HGA D++WLQRD G+Y+ +FDT
Sbjct: 265 ISTRQQDWIVDTLQPWRHKLEVLNEVFADPSIVKVFHGAYMDMIWLQRDLGLYVNGLFDT 324
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A + L SL +LL F +A+K+YQ ADWR+RP+P+EML YAR DTHYLL+IYD
Sbjct: 325 YFACQQLGYSGRSLAFLLSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHIYD 384
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL---------YEKELLSENSYLHIYGL 171
++ L S S N P ++ R+ + R+L Y +E + + Y L
Sbjct: 385 QVRNDLVS----SSNRSVPEQDLISRALEKSRELSLSRHVHSGYNEETGEGSRGWYNYVL 440
Query: 172 QGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+ + L +A Q + + +WRD AR +DES +VL L ++ + P A L L+
Sbjct: 441 KHSHLAYDAAQFTLFKTIWKWRDDTARKEDESPNFVLGTNHLADVCRASPPDAKALHSLM 500
>gi|402223082|gb|EJU03147.1| hypothetical protein DACRYDRAFT_50127, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 555
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 9/224 (4%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+VVDTL LR ++ L EVF D KV HGA DI WLQRDF +Y+ N+FDT
Sbjct: 307 LSTREADWVVDTLALREELE-VLNEVFADSNIVKVFHGATMDINWLQRDFNLYIVNLFDT 365
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L SL +LL +C A+K +Q ADWR+RPLP EM+ YAR DTH+LLY+YD
Sbjct: 366 YYASKALNFPAFSLAFLLDLYCEFKADKRFQLADWRIRPLPQEMMDYARSDTHFLLYVYD 425
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-----SENSYLHIYGLQGAG 175
++ + + K E + +V+ S D Q++E E + ++
Sbjct: 426 QVR---NDLLKRVEGGPDLVEKVFDLSKDTALQVWEPERYDPAGNGPGGWQNLTRKWNKH 482
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+LAV + WRD +AR +DE YVL N + +A+ P
Sbjct: 483 FMGSKLAVFKAVYAWRDRVAREEDEGLRYVLTNPQMFALAENCP 526
>gi|428169598|gb|EKX38530.1| hypothetical protein GUITHDRAFT_59898, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 163 bits (412), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/123 (60%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +DF+VDT++LR + L F DP KV HGAD D+ WLQRDFG+Y+ NMFDT
Sbjct: 32 ISTREQDFIVDTIELRSCIH-LLLPAFTDPKITKVFHGADSDVRWLQRDFGLYIVNMFDT 90
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQASRVL+ L YLLH FC A+K+YQ ADWRVRPL EML+YAR DTHYLLYIYD
Sbjct: 91 GQASRVLEFPSYGLAYLLHRFCEEEADKQYQLADWRVRPLTPEMLKYARMDTHYLLYIYD 150
Query: 121 IMK 123
++
Sbjct: 151 QLR 153
>gi|354544046|emb|CCE40768.1| hypothetical protein CPAR2_108030 [Candida parapsilosis]
Length = 771
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 172/328 (52%), Gaps = 61/328 (18%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L +VF DP KV+HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 271 ISNREKDWIIDTLVLRDDLS-VLNKVFTDPKIIKVLHGAFMDIIWLQRDLGLYIVSLFDT 329
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYI+D
Sbjct: 330 YHASRQLGFSKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPKPMLAYARSDTHFLLYIFD 389
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL---LSEN-------------- 163
++ KL K L +V S V ++ +E LS N
Sbjct: 390 QLRNKLIDSDK--------LAQVLFDSRQVAKRRFEYTKFRPLSNNLGSKVSCPVMAANP 441
Query: 164 -----SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-Q 217
S ++ Y + A + VV L +WRD+IAR +DES Y++PN+ L+ +A +
Sbjct: 442 KEPWGSLMYQYNVP-----AFKRPVVEQLYKWRDLIARKEDESVRYIMPNQLLVSLATLE 496
Query: 218 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
P K+ + SY+ + + N+ + A ++I LKE SE+ +
Sbjct: 497 SPVDVGKVLNV----PSYVSEH------VRLNARELA---KLIDDTLKE------SEQND 537
Query: 278 VLVLDTSSN-LKI----PNVGRESVDGV 300
++D SN L + P V ESV+G+
Sbjct: 538 WAIVDKWSNQLTVEAEEPKVDIESVNGL 565
>gi|366995964|ref|XP_003677745.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
gi|342303615|emb|CCC71396.1| hypothetical protein NCAS_0H00860 [Naumovozyma castellii CBS 4309]
Length = 755
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 152/291 (52%), Gaps = 29/291 (9%)
Query: 1 MSLRTEDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
+S R D+++DTL LR +Q+ L VF +P KV HGA DI+WLQRD G+Y+ +F
Sbjct: 259 ISTRKNDYLIDTLALREDLQI---LNNVFANPMITKVFHGAFMDIIWLQRDLGLYVVGLF 315
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
DT ASR + L ++SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL I
Sbjct: 316 DTFHASRAMGLPKHSLAYLLEKFAQFKTSKKYQLADWRIRPLSKAMHAYARADTHFLLNI 375
Query: 119 YDIMK------IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI---- 168
+D M+ KL+ + KES N V KR ++ + ++L N ++
Sbjct: 376 FDQMRNSLIEQNKLAGVLKESRN-------VAKRRFEYSS--FRPKVLQTNGLVYSPIEK 426
Query: 169 -----YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+ + Q+ ++ L +WRD IAR DDES +V+PN+ L+ + P A
Sbjct: 427 DDPWKTIMFQYNIPPQKEPLLKELYQWRDKIARRDDESPRFVMPNQLLVSLVAYTPIDAP 486
Query: 224 KLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
+ + S Y+ + ++IKN + + + + + EE + V E
Sbjct: 487 GVVSVSNSVTDYVRSNSKILANLIKNCLAKMKDNKFLDNNVAEEGISVVPE 537
>gi|414864886|tpg|DAA43443.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 352
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 164/303 (54%), Gaps = 41/303 (13%)
Query: 129 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 188
+ +ES + L EV+KRS ++C Q YEKELL++ SYLHIYGLQ L+A+QLAVVA L
Sbjct: 5 LQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDARQLAVVAALH 64
Query: 189 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 248
EWRD IAR +DESTGY+LPN+ LIEIAKQ+PT L+R++KSK+ Y+E + + +
Sbjct: 65 EWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLELIAYTVW 124
Query: 249 NSMQNAANFEVIAQKLKEERME---VASEET--EVLVLDTSSNLKIPNVGRESVDGVDAL 303
N+++ + FE IA++LK+ER+E + S +T EV LD ++ R + D D
Sbjct: 125 NALEYSYAFEGIAEQLKKERLEQVALKSGQTSDEVTPLDA-------DIDRSNFDSSDQ- 176
Query: 304 VGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSS- 362
+VA R G S A +I E+K T S +S
Sbjct: 177 -------------------SANVNVASGSRAGFMSEAALISSIHLEDKTQTMSSVKTSQT 217
Query: 363 --GQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIK 420
GQ R +N S + + A+Q L + AL GN GE ++ + +E +
Sbjct: 218 LLGQIRPVNK-DVLSNNIHQQAIQDL---SLTLKALKGNLAS--GGESNEQAGINVENFR 271
Query: 421 SSV 423
SSV
Sbjct: 272 SSV 274
>gi|428671950|gb|EKX72865.1| 3'-5' exonuclease domain containing protein [Babesia equi]
Length = 742
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 139/247 (56%), Gaps = 13/247 (5%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
ED++VD K+ + L EV DP KV HG+D DI+WLQRDFG+Y+ NMFDT A+
Sbjct: 369 EDWIVDPFKIFGSMN-LLNEVMTDPEILKVFHGSDNDIIWLQRDFGVYVVNMFDTKAAAE 427
Query: 66 VLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
VLK+ + SL+YLL + CGV +K YQ ADWR RPLP EML+YA DTHYL+ +Y I+K
Sbjct: 428 VLKVPGKRSLDYLLMNLCGVRIDKSYQTADWRKRPLPPEMLKYACGDTHYLIKLYTILK- 486
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----KELLSENSYLHIYGLQGAGLNAQQ 180
++ E+ + ++ K +C++ Y K + S + YG+ LN
Sbjct: 487 ---NLALGMEDGREKIIQIMKNGKHICQRQYSEKNPKLIAMARSIGNKYGIPVDKLNRIS 543
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
++ L +R++ AR DES +L +R + I ++ + +R K+ + + +
Sbjct: 544 YNLLFNLLVFRNIAARTLDESESLLLSDRNIATIVRR--ANSGSFQRFAKAAYPCLVN-L 600
Query: 241 GPVLSII 247
GP ++ I
Sbjct: 601 GPEIAYI 607
>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704625|gb|EMD44835.1| exosome complex exonuclease RRP6, putative [Entamoeba histolytica
KU27]
Length = 517
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 142/258 (55%), Gaps = 14/258 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ D+++DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N D+
Sbjct: 230 ISTRSSDYIIDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDS 288
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQ +R LKL+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D
Sbjct: 289 GQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIID 348
Query: 121 IMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++ +E D L EV +S ++C +L+ + S++ + + + +
Sbjct: 349 QLR---------NECIDAGVLEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIKKT 397
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IER 238
Q L RD IAR +DES V+ L I +LPT KLR K Y +E
Sbjct: 398 QFDTFKKLYLLRDKIARIEDESPEAVINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEM 457
Query: 239 YMGPVLSIIKNSMQNAAN 256
+ + + K Q N
Sbjct: 458 HASEFILLTKQEHQIKLN 475
>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
SAW760]
Length = 517
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 142/258 (55%), Gaps = 14/258 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ D+++DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N D+
Sbjct: 230 ISTRSSDYIIDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDS 288
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQ +R LKL+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D
Sbjct: 289 GQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIID 348
Query: 121 IMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++ +E D L EV +S ++C +L+ + S++ + + + +
Sbjct: 349 QLR---------NECIDVGILEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIKKT 397
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IER 238
Q L RD IAR +DES ++ L I +LPT KLR K Y +E
Sbjct: 398 QFDTFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEM 457
Query: 239 YMGPVLSIIKNSMQNAAN 256
+ + + K Q N
Sbjct: 458 HASEFILLTKQEHQIKLN 475
>gi|407036010|gb|EKE37956.1| exosome component 10, putative [Entamoeba nuttalli P19]
Length = 517
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 142/258 (55%), Gaps = 14/258 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R+ D+++DT+ LR + L + F +P +KV HG D D++WL +FG+Y+ N D+
Sbjct: 230 ISTRSSDYIIDTITLRDSIT-LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDS 288
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQ +R LKL+ SL+YLL +C V+A+K+YQ ADWR+RPL EM+ YAR DTHYLLYI D
Sbjct: 289 GQCARALKLQHFSLKYLLQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIID 348
Query: 121 IMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++ +E D L EV +S ++C +L+ + S++ + + + +
Sbjct: 349 QLR---------NECIDAGVLEEVLNKSNELCLRLFRPTVCSDDVIERV--ARRSWIKKT 397
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IER 238
Q L RD IAR +DES ++ L I +LPT KLR K Y +E
Sbjct: 398 QFDTFKKLYLLRDKIARIEDESPESIINMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEM 457
Query: 239 YMGPVLSIIKNSMQNAAN 256
+ + + K Q N
Sbjct: 458 HASEFILLTKQEHQIKLN 475
>gi|365758455|gb|EHN00296.1| Rrp6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 734
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 143/268 (53%), Gaps = 25/268 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT++LR + L EVF DP KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 VSTRERDYLVDTIELRDALH-ILNEVFTDPLIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRARPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS----ENSYL 166
++ KL K L V S +V ++ +E E+ S EN +
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKHRPRTPSSEVYSPIEKENPWR 426
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+ + + +++ +V L WRD IAR DDES +V+PN+ L + P +
Sbjct: 427 VL--MYQYNITSEKEELVKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIGVV 484
Query: 227 RLLKSKHSYIERYMGPVLSIIKNSMQNA 254
L ++ + + ++I+N+++N
Sbjct: 485 SLTNGVTEHVRQNAKVLANLIENALRNV 512
>gi|406699611|gb|EKD02812.1| hypothetical protein A1Q2_02887 [Trichosporon asahii var. asahii
CBS 8904]
Length = 906
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 137/262 (52%), Gaps = 34/262 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+++DTL LR ++ + L VF DP+ KV HGAD DIVWLQ DF IY+ N+FD
Sbjct: 359 ISTREGDWIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDIVWLQEDFDIYIVNLFD 418
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A++VL+ + SL LL +C +K YQ ADWR+RP+PDEM++YAR DTH+LL+IY
Sbjct: 419 TYHATKVLEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDEMMKYARSDTHFLLFIY 478
Query: 120 DIMKIKL----SSMPKESENSDTP-------LTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D ++ L S P S TP + +V S + +LY+++
Sbjct: 479 DNLRNALIARASRTPSPSVEGQTPKPNPQRAMRKVLDLSSETALKLYQRDGYDP------ 532
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
++G G+N G + + D V+ LI+++ P A+ L R
Sbjct: 533 --VKGQGMN--------GWANLSKKLGKKD------VMKEEVLIQLSHLRPNNASVLART 576
Query: 229 LKSKHSYIERYMGPVLSIIKNS 250
L + + + +IKN+
Sbjct: 577 LVHQSAEAYARADEIAEVIKNA 598
>gi|401887667|gb|EJT51646.1| hypothetical protein A1Q1_07058 [Trichosporon asahii var. asahii
CBS 2479]
Length = 906
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 137/262 (52%), Gaps = 34/262 (12%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R D+++DTL LR ++ + L VF DP+ KV HGAD DIVWLQ DF IY+ N+FD
Sbjct: 359 ISTREGDWIIDTLALRAELREHKLGHVFADPSVVKVFHGADSDIVWLQEDFDIYIVNLFD 418
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A++VL+ + SL LL +C +K YQ ADWR+RP+PDEM++YAR DTH+LL+IY
Sbjct: 419 TYHATKVLEFPKFSLASLLQLYCDFEPDKRYQMADWRIRPIPDEMMKYARSDTHFLLFIY 478
Query: 120 DIMKIKL----SSMPKESENSDTP-------LTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D ++ L S P S TP + +V S + +LY+++
Sbjct: 479 DNLRNALIARASRTPSPSVEGQTPKPNPQRAMRKVLDLSSETALKLYQRDGYDP------ 532
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
++G G+N G + + D V+ LI+++ P A+ L R
Sbjct: 533 --VKGQGMN--------GWANLSKKLGKKD------VMKEEVLIQLSHLRPNNASVLART 576
Query: 229 LKSKHSYIERYMGPVLSIIKNS 250
L + + + +IKN+
Sbjct: 577 LVHQSAEAYARADEIAEVIKNA 598
>gi|401413034|ref|XP_003885964.1| Ribonuclease D, related [Neospora caninum Liverpool]
gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
Length = 1387
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 147/291 (50%), Gaps = 27/291 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT
Sbjct: 503 LSTREKDYLIDPFPLFEHLH-VLNAITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDT 561
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+R L + SL LLH +CGV ANK+YQ ADWR RPL EM YAR DTHYL +I+
Sbjct: 562 CVAARALAVPGGASLANLLHTYCGVEANKQYQLADWRRRPLTPEMEAYARSDTHYLPFIF 621
Query: 120 DIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELL 160
D+MK +L S P + +E + RS DVC +L+ E
Sbjct: 622 DVMKNQLLSKPELGGALSPPAVTGLEEGLEVTEAGQQAMQFTLDRSRDVCLKLHVEAPFD 681
Query: 161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+ + AGL+ V L +WRD +AR D S + L+ +A++ PT
Sbjct: 682 APAEAEALLKRNRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPT 741
Query: 221 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSM------QNAANFEVIAQKLK 265
+ + ++ + ++ ++ +I+ S+ Q AA+ ++ L+
Sbjct: 742 STIEFNAAMRPAPPTLRQHTQELIQLIQRSLLGSEAAQRAASGAFLSPALR 792
>gi|342319925|gb|EGU11870.1| Hypothetical Protein RTG_02115 [Rhodotorula glutinis ATCC 204091]
Length = 966
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 26/240 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R +D+++D + V+ L E F +P KV+HGA DIVWLQRDFG+Y+ +FD
Sbjct: 321 LSTRKKDYIIDAIDPGVRENLESLNEFFTNPEWIKVLHGAKSDIVWLQRDFGLYIVGLFD 380
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL ++SL LL + +K YQ ADWR+RPLP EML+YAR DTHYLL IY
Sbjct: 381 TYHATHVLGYAQHSLASLLDMYTDFEPDKRYQLADWRIRPLPKEMLQYARSDTHYLLSIY 440
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY----------------------EK 157
D +++ L + S+ + +P+ +V+ RS V +
Sbjct: 441 DHLRLALHAKGAASKETPSPIEDVFNRSIPVSAITFSLPPFDHETGHFESGFLVPLARHG 500
Query: 158 ELLSENSYLHIYGL---QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+L + ++ L + L G G +L V+ + WR+ +AR +DEST YVL + +++I
Sbjct: 501 QLKAYSTALAVPTLPIKTGWGPGEAKLEVLREVTRWREKVAREEDESTRYVLSLQGVLQI 560
>gi|403218486|emb|CCK72976.1| hypothetical protein KNAG_0M01230 [Kazachstania naganishii CBS
8797]
Length = 738
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 128/237 (54%), Gaps = 21/237 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT+ LR ++ L +VF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 257 ISTRDTDYLVDTIALRDELH-ILNQVFTDPMVTKVFHGAFMDIIWLQRDLGLYIVSLFDT 315
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L ++SL YLL +K+YQ ADWR+RPL M YAR DTH+LL I+D
Sbjct: 316 FHASKALGFPKHSLAYLLETLANFKTSKKYQLADWRIRPLSKPMSVYARADTHFLLNIFD 375
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-----ELLSENSYLHIYG----- 170
M+ +L D L V S V ++ +E +L + + I
Sbjct: 376 QMRNQLIK--------DNKLAGVLGESRKVAKRRFEYSKFRPKLAQPDVFTPIEKESPWR 427
Query: 171 --LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ + ++ +V L EWRD IAR DDES Y++PN+ LI ++ PT L
Sbjct: 428 TLMFQYNVTPEKEELVKALYEWRDTIARRDDESPRYIMPNQLLISLSAYTPTDPVSL 484
>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
Length = 744
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 130/234 (55%), Gaps = 25/234 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT+ LR ++ L ++F DP KV+HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISDREHDWIVDTIALREELY-ILNDIFTDPNVTKVLHGAFMDIIWLQRDLGLYIVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR+L ++SL YLL F +K+YQ ADWR+RPL ML YAR DTH+LL I+D
Sbjct: 315 YHASRMLGFPKHSLAYLLERFANFKTSKKYQLADWRIRPLTKPMLAYARADTHFLLNIFD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE--------------LLSENSYL 166
++ L K +++V S V ++ +E + + +
Sbjct: 375 KLRNSLLEQNK--------MSDVLHESRKVAKRRFEYSSFRPKVPSSAVFSPIEKDEPWK 426
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+I + + A + ++ L EWRD IAR DDES YV+PN+ L+ + PT
Sbjct: 427 NI--MFQYNIPASKELLLRRLYEWRDTIARRDDESPRYVMPNQLLVSLVAGAPT 478
>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 785
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 26/232 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 275 ISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+IYD
Sbjct: 334 FHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGLNA 178
+K KL K L++V S V ++ +E K N++ + N
Sbjct: 394 QLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNP 445
Query: 179 QQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 446 KEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 786
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 26/232 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 275 ISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+IYD
Sbjct: 334 FHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGLNA 178
+K KL K L++V S V ++ +E K N++ + N
Sbjct: 394 QLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNP 445
Query: 179 QQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 446 KEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
Length = 786
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 26/232 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 275 ISNREQDWIIDTLALRDDLT-VLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+IYD
Sbjct: 334 FHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGLNA 178
+K KL K L++V S V ++ +E K N++ + N
Sbjct: 394 QLKNKLIDAEK--------LSQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNP 445
Query: 179 QQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
++ VV L +WRD++A+ DES Y++PN+ L+ +A
Sbjct: 446 KEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVRYIMPNQLLVSLA 497
>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 159 bits (402), Expect = 5e-36, Method: Composition-based stats.
Identities = 71/123 (57%), Positives = 90/123 (73%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R DFVVD L LR V L + F D K KVMHGAD D+ WLQ+DFG+++ +FDT
Sbjct: 50 ISTRERDFVVDVLALRSHVRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDT 109
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
GQA+RVL+L L YLLHH+CG+ ANK +Q ADWR+RPL EM+ YAR DTH+LLY++D
Sbjct: 110 GQAARVLELPSKGLAYLLHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHD 169
Query: 121 IMK 123
+K
Sbjct: 170 RLK 172
>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 786
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 124/226 (54%), Gaps = 26/226 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR ++ L EVF +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 275 ISNRDQDWIIDTLALRDELTE-LNEVFTNPNIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 333
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L L R SL YLL H+ +K+YQ ADWR+RPL ML YAR DTH+LLYIYD
Sbjct: 334 YHASRALGLSRFSLAYLLEHYAQFKTSKKYQLADWRIRPLSSPMLAYARSDTHFLLYIYD 393
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-------KELLSENSYLHIYGL-- 171
+K KL K L V S V ++ +E L S+ +
Sbjct: 394 QLKNKLIDSDK--------LRGVLHDSRQVAKRRFEYTKFRPLANLFSKQVTCPVMAFNP 445
Query: 172 -QGAGLNAQQLAV-------VAGLCEWRDVIARADDESTGYVLPNR 209
+ G Q V V L +WRD +AR +DES +++PN+
Sbjct: 446 KEPWGSIVSQYNVPPFKKPLVEVLYKWRDAMARKEDESVRFIMPNQ 491
>gi|400601943|gb|EJP69568.1| 3'-5' exonuclease [Beauveria bassiana ARSEF 2860]
Length = 802
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 130/240 (54%), Gaps = 15/240 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+ L E F DP+ KV HGA D+VWLQRD G+Y+ +FDT
Sbjct: 265 ISTRQQDWIVDTLQPWRHKLEILNEAFADPSIIKVFHGAYMDMVWLQRDLGLYVNGLFDT 324
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A L SL +LL F +A+K+YQ ADWR+RP+P+EML YAR DTHYLL+IYD
Sbjct: 325 FFACEQLGYSGRSLAFLLSKFADFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLHIYD 384
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL---------YEKELLSENSYLHIYGL 171
++ L S S N P ++ R+ + L Y++E + Y L
Sbjct: 385 QVRNDLVS----SSNRSAPEQDLIGRALQKSKDLSLSRHVHAGYQEENGEGPRGWYNYLL 440
Query: 172 QGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL 229
+ + L +A Q + + +WRD AR +DES +VL L +I + P A L L+
Sbjct: 441 KHSHLSYDAAQFTMFKTIWKWRDDTARKEDESPNFVLGTNHLADICRANPPDAKALHSLM 500
>gi|401837803|gb|EJT41675.1| RRP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 734
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 142/267 (53%), Gaps = 25/267 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT++LR + L EVF DP KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 VSTRERDYLVDTIELRDALH-ILNEVFTDPLIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRARPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS----ENSYL 166
++ KL K L V S +V ++ +E E+ S EN +
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKHRPRTPSSEVYSPIEKENPWR 426
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+ + + +++ +V L WRD IAR DDES +V+PN+ L + P +
Sbjct: 427 VL--MYQYNITSEKEELVKDLYLWRDFIARRDDESPRFVMPNQLLAALVAYAPIDVIGVV 484
Query: 227 RLLKSKHSYIERYMGPVLSIIKNSMQN 253
L ++ + + ++I+N++ N
Sbjct: 485 SLTNGVTEHVRQNAKVLANLIENALGN 511
>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
Length = 737
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 144/265 (54%), Gaps = 23/265 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D++VDT+ LR + L EVF +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 256 ISTRTQDYIVDTIALRDDLK-MLNEVFTNPLITKVFHGAFMDIIWLQRDLGLYIVSLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L L ++SL YLL + +K+YQ ADWR RPL M+ YAR DTH+LL I+D
Sbjct: 315 FHASKALGLPKHSLAYLLEKYANFKTSKKYQLADWRRRPLSKAMMAYARADTHFLLNIFD 374
Query: 121 IMKI------KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG---- 170
M+ KL+ + +ES N V R ++ + Y+ ++ N + +
Sbjct: 375 QMRNGLISSGKLAGVLRESRN-------VALRRFEYSK--YKPKIPVANIFTPVEKESPW 425
Query: 171 ---LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + + ++ L EWRD++AR DDES YV+PN+ L+ + P +
Sbjct: 426 RTLMYQYNIPVDKEPLIRELYEWRDMMARRDDESPRYVMPNQLLVSLVAYGPVDPISVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQ 252
+ ++ R + ++IK ++
Sbjct: 486 VSSVVTDHVRRNSKTLANLIKKKLE 510
>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
Length = 327
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 162 ISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDT 220
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 221 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARXDAHYLLYIAD 280
Query: 121 IMKIKLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKE 158
+ +L + +S + D L E +RS C QLY KE
Sbjct: 281 SLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKE 321
>gi|363750290|ref|XP_003645362.1| hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888996|gb|AET38545.1| Hypothetical protein Ecym_3030 [Eremothecium cymbalariae
DBVPG#7215]
Length = 747
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 21/237 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDT+ LR Q L E+F DP+ KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 258 ISTRESDWLVDTIALR-QDLQVLNEIFTDPSILKVFHGAFMDIIWLQRDLGLYVVSLFDT 316
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L ++SL YLL F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 317 YHASRALGFPKHSLAYLLETFANFKTSKKYQLADWRIRPLSKPMKTYARADTHFLLNIYD 376
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK-----ELLSENSYLHI-----YG 170
++ +S+ KE + L+ V S +V ++ +E ++LS + I +
Sbjct: 377 KLR---NSLIKEDK-----LSGVLHASRNVAKRRFEYTSFRPKVLSPTVFSPIEKDDPWR 428
Query: 171 LQGAGLNAQQLA--VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ N + ++ L +WRD++AR DDES YV+PN+ L+ + P+ + L
Sbjct: 429 TLMSQYNVPDIKEPLMRKLYKWRDMVARKDDESVRYVMPNQLLVSLVTLAPSDPSGL 485
>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 1353
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 142/274 (51%), Gaps = 21/274 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT
Sbjct: 506 LSTREKDYIIDPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDT 564
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+R L + SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +I+
Sbjct: 565 CVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIF 624
Query: 120 DIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELL 160
D+MK +L S P + +E + +RS DVC +L+ E
Sbjct: 625 DVMKNQLLSKPELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFD 684
Query: 161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+ + AGL+ V L +WRD +AR D S + L+ +A++ PT
Sbjct: 685 APAEAEALLKRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPT 744
Query: 221 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 254
+A + ++ + ++M ++ +I+ S+ ++
Sbjct: 745 SAVEFAAAMRPAPPTLRQHMPELIQLIQRSLSDS 778
>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
Length = 1353
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 142/274 (51%), Gaps = 21/274 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT
Sbjct: 506 LSTREKDYIIDPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDT 564
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+R L + SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +I+
Sbjct: 565 CVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIF 624
Query: 120 DIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELL 160
D+MK +L S P + +E + +RS DVC +L+ E
Sbjct: 625 DVMKNQLLSKPELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFD 684
Query: 161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+ + AGL+ V L +WRD +AR D S + L+ +A++ PT
Sbjct: 685 APAEAEALLKRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPT 744
Query: 221 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 254
+A + ++ + ++M ++ +I+ S+ ++
Sbjct: 745 SAVEFAAAMRPAPPTLRQHMPELIQLIQRSLSDS 778
>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 144/269 (53%), Gaps = 23/269 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 130 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 188
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M AR DTH+LL IYD
Sbjct: 189 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYD 248
Query: 121 ------IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI------ 168
I KL+ + ES N V KR ++ + Y S Y I
Sbjct: 249 QLRNKLIESNKLAGVLYESRN-------VAKRRFEYSK--YRPLTPSSEVYSPIEKESPW 299
Query: 169 -YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 300 KILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 359
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
L ++ + + ++I+++++N N
Sbjct: 360 LTNGVTEHVRQNAKLLANLIRDALRNIKN 388
>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 1353
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 142/274 (51%), Gaps = 21/274 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + L + +P K+ HGAD DI+WLQRDF +Y+ NMFDT
Sbjct: 506 LSTREKDYIIDPFALFDHLH-VLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDT 564
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+R L + SL LL +C V ANK+YQ ADWR RPL EM YAR DTHYL +I+
Sbjct: 565 CVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIF 624
Query: 120 DIMKIKLSSMP------------------KESENSDTPLTEVYKRSYDVCRQLY-EKELL 160
D+MK +L S P + +E + +RS DVC +L+ E
Sbjct: 625 DVMKNQLLSKPELGAALSPSAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFD 684
Query: 161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+ + AGL+ V L +WRD +AR D S + L+ +A++ PT
Sbjct: 685 APAEAEALLKRTRAGLSPLSYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPT 744
Query: 221 TAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 254
+A + ++ + ++M ++ +I+ S+ ++
Sbjct: 745 SAVEFAAAMRPAPPTLRQHMPELIQLIQRSLSDS 778
>gi|358058978|dbj|GAA95376.1| hypothetical protein E5Q_02030 [Mixia osmundae IAM 14324]
Length = 768
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 138/286 (48%), Gaps = 27/286 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVG-PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S R+ D++VDTL V+ L EVF DP K KVMHGA D++WLQRDFG+Y+ N+FD
Sbjct: 264 ISTRSHDWIVDTLVSEVRDRLESLNEVFADPAKVKVMHGAQSDVIWLQRDFGLYIVNLFD 323
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+ VL + SL LL + +K YQ ADWR+RPLP EM+ YAR DTHYLL IY
Sbjct: 324 TYHATVVLSYGQRSLASLLTKYTHFVPDKRYQLADWRLRPLPQEMIDYARSDTHYLLNIY 383
Query: 120 D-----IMKIKLSSMPKES-ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 173
D ++ KL P+ + + S+T L V +RS V Q Y S L G +G
Sbjct: 384 DHLRRALIATKLDPTPEHALDGSETLLQRVDRRSRIVASQAYHGSDYDYESGLGANGWRG 443
Query: 174 --------------------AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
+ + A WRD +AR DES Y++ + +
Sbjct: 444 LVRVMNKGAEYRVNLAKGETSSGRGPEFAAFRAAHSWRDQLARELDESPRYIMSHHLVCR 503
Query: 214 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEV 259
+ PT A + + R + +IK ++ EV
Sbjct: 504 LGTVRPTRPADVLACCSVASQTVLRRASELAQVIKAALDTPQATEV 549
>gi|241948847|ref|XP_002417146.1| exosome component 3'-5' exonuclease [Candida dubliniensis CD36]
gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
CD36]
Length = 776
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 126/232 (54%), Gaps = 26/232 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL LR + L EVF DP KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 272 ISSREQDWIVDTLVLRDDLT-VLNEVFADPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 330
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L R SL YLL + +K+YQ ADWR+RPL ML YAR DTH+LL+IYD
Sbjct: 331 YHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYD 390
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE--KELLSENSYLHIYGLQGAGLNA 178
+K KL K L +V S V ++ +E K N++ + N
Sbjct: 391 QLKNKLIDANK--------LAQVLYDSRQVAKRRFEYTKYRPMANTFSNKVTCPVMAFNP 442
Query: 179 QQ---------------LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
++ VV L +WRD++A+ DES Y++PN+ L+ +
Sbjct: 443 KEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKQQDESVRYIMPNQLLVSLV 494
>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
Length = 949
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 121/219 (55%), Gaps = 29/219 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + D+++DT+ L V LR VF +P+ K+ HGAD D++WLQRDF IY+ NMFDT
Sbjct: 188 ISTQKADYLIDTIALH-DVMSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDT 246
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV +K Q DWR+RPL EM++YAR D HYLLYI +
Sbjct: 247 AKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIAN 306
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ +L + K + SD+P ++ E S+
Sbjct: 307 CLASELHA--KTYDASDSPNDKI--------------NFFFEASH------------RSN 338
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ +V +C WRD++AR DES YVL ++ + +A +P
Sbjct: 339 MDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVP 377
>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
Length = 949
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 121/219 (55%), Gaps = 29/219 (13%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + D+++DT+ L V LR VF +P+ K+ HGAD D++WLQRDF IY+ NMFDT
Sbjct: 188 ISTQKADYLIDTIALH-DVMSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDT 246
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL +CGV +K Q DWR+RPL EM++YAR D HYLLYI +
Sbjct: 247 AKACEVLSKPQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIAN 306
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ +L + K + SD+P ++ E S+
Sbjct: 307 CLASELHA--KTYDASDSPNDKI--------------NFFFEASH------------RSN 338
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ +V +C WRD++AR DES YVL ++ + +A +P
Sbjct: 339 MDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAVSVP 377
>gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group]
gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group]
Length = 523
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 138/213 (64%), Gaps = 13/213 (6%)
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+V KRS ++C QLYEKELL++ SYLHIYGLQ L+A+QLAVV L +WRD IAR DES
Sbjct: 249 QVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVYALHQWRDYIAREVDES 308
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIA 261
TGYVLPN+ LIEIAK++PT A+L+R++KSK+ +++ + V+ II N+ +++ FE A
Sbjct: 309 TGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAFESRA 368
Query: 262 QKLKEERMEVASEETEVLV---LDTSSNL--KIPNVGRESV-DGVDALVGTTMPHPPAYT 315
++LK+ER+E ++ + + + TS NL +I ++ +E + D + V +
Sbjct: 369 EQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRSMDKEILSDNIHQQVAQA-----TFQ 423
Query: 316 QLKQEPP--KVGSSVAELDRNGLGSFAHPGEAI 346
+LK+ VG+S + R+ G F++ E +
Sbjct: 424 ELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKM 456
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDFVVDTLKLR+ +G YL+E FKDPTK+KVMHGADRDI+WLQRDF IY+CN+FDT
Sbjct: 188 ISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 247
Query: 61 GQASR 65
GQ +
Sbjct: 248 GQVQK 252
>gi|448119348|ref|XP_004203709.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359384577|emb|CCE78112.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 756
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 25/232 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL LR + L E+F +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 270 ISNRQNDWLVDTLALRDDLE-VLNEIFTNPQILKVFHGAFMDIIWLQRDLGLYIVSLFDT 328
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L L + SL YLL F +K+YQ ADWR+RPL M YAR DTH+LLYIYD
Sbjct: 329 YHAAKKLGLSKFSLAYLLESFAKFKTSKKYQLADWRLRPLSPAMKAYARSDTHFLLYIYD 388
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL---LSENSYLHIYG------- 170
M+ KL EN D L EV S V ++ +E +S + +Y
Sbjct: 389 QMRNKL------LEN-DGKLQEVLYESRQVAKRRFEYTKFRPISSTTTALVYSPLMVSNP 441
Query: 171 -------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
+ + A + ++ L EWRD +A+ DES Y++PN+ L+ +A
Sbjct: 442 REPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKRQDESVRYIMPNQLLVTLA 493
>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 128/233 (54%), Gaps = 27/233 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTLKLR + L E+F +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 268 ISSREKDWIIDTLKLRDSLV-VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 326
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L L R SL YLL ++ +K+YQ ADWR+RPL ML YAR DTH+LLY+YD
Sbjct: 327 YHASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYVYD 386
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE---------------LLSENS- 164
++ +L S + + EV S V ++ +E +++ N+
Sbjct: 387 QLRNQLLS------SGSQKMKEVLHESRQVAKRRFEFTRFRPTSVSGSKVSCPIMAPNAK 440
Query: 165 --YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Y I + L +V L WRD A+ DES YV+PN+ L+ +
Sbjct: 441 EPYSSI--MNQFNLPNHTRPIVEALYLWRDAKAKECDESVRYVMPNQLLVNFS 491
>gi|448116900|ref|XP_004203126.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
gi|359383994|emb|CCE78698.1| Piso0_000726 [Millerozyma farinosa CBS 7064]
Length = 757
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 127/232 (54%), Gaps = 25/232 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTL LR + + E+F +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 270 ISNRQNDWLVDTLALRDDLE-VMNEIFTNPQILKVFHGAFMDIIWLQRDLGLYIVSLFDT 328
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L L + SL YLL F +K+YQ ADWR+RPL M YAR DTH+LLYIYD
Sbjct: 329 YHAAKKLGLSKFSLAYLLETFAKFKTSKKYQLADWRLRPLSPAMKAYARSDTHFLLYIYD 388
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL---SENSYLHIYG------- 170
M+ KL EN D L EV S V ++ +E S + +Y
Sbjct: 389 QMRNKLL------EN-DGRLQEVLYESRQVAKRRFEYTKFRPTSGTTTALVYSPLMVSNP 441
Query: 171 -------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
+ + A + ++ L EWRD +A+ DES Y++PN+ L+ +A
Sbjct: 442 REPYSSIMSQYNVPAFKKPLIEILFEWRDRVAKQQDESVRYIMPNQLLVTLA 493
>gi|344304844|gb|EGW35076.1| hypothetical protein SPAPADRAFT_53425 [Spathaspora passalidarum
NRRL Y-27907]
Length = 756
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 129/235 (54%), Gaps = 34/235 (14%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L VF DP+ KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 269 ISNRDQDWIIDTLALRDDLT-VLNTVFTDPSIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 327
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L ++SL YLL F +K+YQ ADWR+RPL M+ YAR DTH+LL IYD
Sbjct: 328 YCASKNLGFPKHSLAYLLETFAHFKTSKKYQLADWRIRPLSHPMMAYARSDTHFLLNIYD 387
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE--------------LLSEN--- 163
++ KL K L +V S V ++ +E ++S N
Sbjct: 388 QLRNKLIHENK--------LQQVLYDSRQVAKRRFEYTKYRPLAPNGKVSCPVMSSNPRE 439
Query: 164 ---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
S ++ Y + + VV L WRD++A+ +DES Y++PN+ L+ +A
Sbjct: 440 PFASIMYQYNVPSF-----KKGVVEVLYNWRDLVAKQEDESVRYIMPNQLLVTLA 489
>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 826
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 131/231 (56%), Gaps = 23/231 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+V+DTL LR ++ L +F + KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 274 ISNREKDWVIDTLALRDELSK-LNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR L + SL+YLL F +K+YQ ADWR+RPLP ML YAR DTH+LLYIYD
Sbjct: 333 YHASRQLGFAKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ----------LYEKELLSEN------S 164
++ KL K S+ L +V KR ++ + +++ N S
Sbjct: 393 QLRNKLIDQDKLSK-VLFELRQVAKRRFEYTKYRPLSNTPGNGQVSCPIMASNPKEPWGS 451
Query: 165 YLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
++ Y + + +V L ++RD +AR +DES Y++PN+ L+ ++
Sbjct: 452 IMYQYNVPSFKKH-----IVEVLYKYRDAVAREEDESVRYIMPNQLLVSLS 497
>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
6260]
Length = 755
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 128/229 (55%), Gaps = 19/229 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTLKLR + L E+F +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 268 ISSREKDWIIDTLKLRDSLV-VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDT 326
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L L R SL YLL ++ +K+YQ ADWR+RPL ML YAR DTH+LLY+YD
Sbjct: 327 YHASKKLGLPRFSLAYLLENYANFKTSKKYQLADWRMRPLLGPMLSYARSDTHFLLYVYD 386
Query: 121 IMKIKL-SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS-------------ENSYL 166
++ +L SS ++ + +V KR ++ R + L+S + Y
Sbjct: 387 QLRNQLLSSGSQKMKEVLHESRQVAKRRFEFTR--FRPTLVSGSKVSCPIMAPNAKEPYS 444
Query: 167 HIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
I + L +V L WRD A+ DE YV+PN+ L+ +
Sbjct: 445 SI--MNQFNLPNHTRPIVEALYLWRDAKAKECDELVRYVMPNQLLVNFS 491
>gi|449016126|dbj|BAM79528.1| similar to polymyositis-scleroderma overlap syndrome associated
autoantigen [Cyanidioschyzon merolae strain 10D]
Length = 492
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 133/249 (53%), Gaps = 26/249 (10%)
Query: 7 DFVVDTLKLRVQV----GPYLREVFKDPTKKKVMHGADRDIVWLQRDF--GIYLCNMFDT 60
D V+D L LR + G ++R + + P KVMHGAD D++WLQRDF + N+FDT
Sbjct: 161 DAVIDALALRSALADPSGAFIR-LLRHPRVVKVMHGADSDVLWLQRDFTPAARIVNLFDT 219
Query: 61 GQASRVLKLERNSLEYLLHHFCG-------------------VNANKEYQNADWRVRPLP 101
+A+++L SL +L+ + + + +Q ADWR+RPLP
Sbjct: 220 ARAAQLLGEPSVSLAHLISCYARDEDRTADPASLRNGSRDALASEKRVFQVADWRIRPLP 279
Query: 102 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 161
ML YAR+DTHYLLY+Y ++ +L + L +++ +S DV + Y + ++
Sbjct: 280 SSMLHYARQDTHYLLYLYRVLSTRLVQETDPNSPETNRLQQLWLKSADVALRRYALQEVA 339
Query: 162 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
+++L + A L+ L ++ L WRD IAR DES YV PN LI + ++ P +
Sbjct: 340 ADAHLKVARQYKAMLSDTMLPLLRDLIHWRDQIAREADESPPYVFPNHFLIALVRETPRS 399
Query: 222 AAKLRRLLK 230
+L +LL+
Sbjct: 400 PFQLDKLLR 408
>gi|150951537|ref|XP_001387875.2| exosome component 3'-5' exonuclease [Scheffersomyces stipitis CBS
6054]
gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
stipitis CBS 6054]
Length = 792
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 128/243 (52%), Gaps = 25/243 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L VF +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 276 ISNRDQDWIIDTLALRDDLE-CLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 334
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L + SL YLL F +K+YQ ADWR+RPL M+ YAR DTH+LL I+D
Sbjct: 335 YHASKSLGFPKFSLAYLLETFAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFD 394
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK---ELLSENSYLHIYG------- 170
+K KL E L V S V ++ +E L+ N +
Sbjct: 395 QLKNKLIDAGNEK------LQRVLFDSRQVAKRRFEYTPFRPLTNNINSRVSCPVMASNP 448
Query: 171 -------LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK-QLPTTA 222
+ + + + +VV L WRD IA+ +DES +V+PN+ L+ +A P
Sbjct: 449 REPFSSIMVQYNVPSHKKSVVEALYNWRDRIAKIEDESVRFVMPNQLLVNLANLNQPVDV 508
Query: 223 AKL 225
AK+
Sbjct: 509 AKV 511
>gi|294654453|ref|XP_456510.2| exosome component 3'-5' exonuclease [Debaryomyces hansenii CBS767]
gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
Length = 776
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 156/313 (49%), Gaps = 48/313 (15%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTLKLR + L +VF +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 274 ISSRDQDWIIDTLKLRDDLES-LNKVFTNPDIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 332
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L + SL YLL F +K+YQ ADWR+RPL ML YAR DTH+LL IYD
Sbjct: 333 YHASKKLGFPKFSLAYLLETFANFKTSKKYQLADWRIRPLSPPMLAYARSDTHFLLNIYD 392
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ KL + L EV S V ++ +E Y L +G
Sbjct: 393 QLRNKL------IDAGANRLQEVLYESRQVAKRRFE--------YTKFRPLSTSGGKVSC 438
Query: 176 -------------------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
+ + ++ L WRD +A+ DDES Y++ N+ L+ ++
Sbjct: 439 PVMANNPKEPFSSILLQYNVPYHKKPLIEALYNWRDALAKRDDESVRYIMSNQLLVSLSS 498
Query: 217 QL-PTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN--------FEVIAQKLKEE 267
P K+ + Y+ + + ++I+N++++ A+ + I++ +
Sbjct: 499 LSQPVDVQKVLGVSNYISDYVRQNAKDLANLIENTLKSMADSDWELVDKWNDISKAADND 558
Query: 268 RMEVASEETEVLV 280
+M ++ ++ + ++
Sbjct: 559 KMNISDDDLDKII 571
>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
Length = 350
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 134/252 (53%), Gaps = 19/252 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPY-LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
++ R +D++VD L + + + + DP KV+HGAD D+ WLQRD YLCNMFD
Sbjct: 13 IATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQRDLSAYLCNMFD 72
Query: 60 TGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
TGQA+RVL+L SL+ LL +CG A+K Q ADWR RPL + M +YAR+D HYLLYI
Sbjct: 73 TGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYARDDVHYLLYI 132
Query: 119 YDIMKIKLSSMPKESENSDTPLT----EVYK----RSYDVCRQLYEKELLSENSYL-HIY 169
YD M+ +L + D +T ++YK RS DV + Y+ +++ ++ H
Sbjct: 133 YDRMRAQL--LCSGGGVDDGKVTAYGRKMYKSTINRSCDVALKTYKD---ADSDFMEHAI 187
Query: 170 GLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
L L ++A L WRD + R D +L +R + IA P T +L
Sbjct: 188 TLSCKTNTPLSLVGRPMLAALMHWRDKLGRQRDVFPNSILTDRLALRIAMDEPVTREQLL 247
Query: 227 RLLKSKHSYIER 238
R L + R
Sbjct: 248 RALGGGSGGVAR 259
>gi|195328901|ref|XP_002031150.1| GM25821 [Drosophila sechellia]
gi|194120093|gb|EDW42136.1| GM25821 [Drosophila sechellia]
Length = 532
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 4/163 (2%)
Query: 57 MFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 116
MFDT +A++ L + R SL YLL H+ ++ +K Q ADWR+RPLP +++ YAR+DTH+L+
Sbjct: 1 MFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLI 60
Query: 117 YIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
Y+Y+ M L + + L VY++S DVC++ Y K + S+L +
Sbjct: 61 YVYERMTNDLL----QQQAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSF 116
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ +QL + G+ EWRD AR++DES GYVLPN +++IA+ LP
Sbjct: 117 DNRQLYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 159
>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S EDF+VDT+ L V LR VF DP KV HGAD D++WLQRDF IY+ NMFDT
Sbjct: 98 ISTHEEDFLVDTIALH-DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDT 156
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A VL + SL YLL CGV NK Q DWR RPL +EM+RYAR D HYLLYI D
Sbjct: 157 AKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD 216
Query: 121 IMKIKLSSM 129
+ +L +
Sbjct: 217 SLTTELKQL 225
>gi|344234698|gb|EGV66566.1| hypothetical protein CANTEDRAFT_128954 [Candida tenuis ATCC 10573]
Length = 737
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 122/226 (53%), Gaps = 14/226 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++DTL LR + L VF +P KV HGA DI+WLQRD G+Y+ ++FDT
Sbjct: 254 ISTRKKDWIIDTLALRDDLQK-LNVVFTNPQIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 312
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ L + SL YLL F +K+YQ ADWR+RPL ML YAR DTH+LL I+D
Sbjct: 313 YHASKKLGFPKFSLAYLLETFAKFKTSKKYQLADWRIRPLSTSMLAYARSDTHFLLNIFD 372
Query: 121 IMKIKL---SSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----LSEN---SYLHIY 169
+K KL + +S D+ L + Y R L L +S N +L I
Sbjct: 373 HLKNKLIDQGNGKMQSVLHDSRLVAKRRFEYTKFRPLKGTSLVTCPVMSSNPLEPFLPIV 432
Query: 170 GLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
+ + VV L WRD +AR DES Y++ N+ L +A
Sbjct: 433 VQYNIPYHIK--PVVEVLYNWRDNLARQFDESVRYIMSNQALALLA 476
>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+++D L + + L EVF +P K+ HG+ D++WLQRDFG+Y+ N+FDT
Sbjct: 299 ISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDT 357
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L L + SL+YLL H+C + +K +Q ADWR+RP+P MLRYAR+DTHYLLY+YD
Sbjct: 358 FFAAKKLDLAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYD 417
Query: 121 IMK 123
++
Sbjct: 418 RLR 420
>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
domain and an HRDc domain [Cryptosporidium parvum Iowa
II]
Length = 957
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D+++D L ++ L E+ +P KV+HG+D DI+WLQRDF +Y+ NMFDT
Sbjct: 325 LSTRTHDYIIDPFNLFNEIQ-MLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMFDT 383
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
GQA+R+L SL+ LL +C ++ +K +Q ADWR RPL +E++ YAR DTHYLLYIY
Sbjct: 384 GQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIY 443
Query: 120 DIMK 123
DIMK
Sbjct: 444 DIMK 447
>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
Length = 1029
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
MS RT D+++D L ++ L E+ +P K+ HG+D DI+WLQRDF +Y+ NMFDT
Sbjct: 422 MSTRTCDYIIDPFPLFEELSR-LNELTTNPRILKLFHGSDYDIIWLQRDFSVYVVNMFDT 480
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
GQA+RVL SL LL+ +C V ANK+YQ +DWR RPLP ++ YAR DTHYL YIY
Sbjct: 481 GQAARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRERPLPQHLIEYARSDTHYLPYIY 540
Query: 120 DIMKIKL 126
DIMK +L
Sbjct: 541 DIMKNQL 547
>gi|430811289|emb|CCJ31212.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 767
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 140/268 (52%), Gaps = 50/268 (18%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D+++DTL+LR ++ L EVF DP KV+HGA DI+WLQRDFG+Y+ +FDT
Sbjct: 253 ISTRNIDWIIDTLELREELEI-LNEVFTDPNIMKVLHGASMDIIWLQRDFGLYIVGLFDT 311
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R+L E + + RPLP+EM YAR DTH+LLYIYD
Sbjct: 312 YHATRILGFEGHVI----------------------FRPLPEEMFSYARSDTHFLLYIYD 349
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ- 179
+K + + +S S L V S +V +++EK+ Y + G G++
Sbjct: 350 QLK---NELLIKSTLSHNLLLSVLSASNNVALRVFEKDK---------YDVDGLGVDGWK 397
Query: 180 --------------QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
Q++V+ L +WRD +AR +DES YVLPN L++IA P A+ +
Sbjct: 398 NILQKWSNCLTSDLQVSVLISLHQWRDKVARQEDESVRYVLPNHILVQIAVNCPEDASSV 457
Query: 226 RRLLKSKHSYIERYMGPVLSIIKNSMQN 253
+ + ++ ++ II+++ Q+
Sbjct: 458 LSICSHIPPLVRVHVDEIVQIIRSTKQD 485
>gi|242079315|ref|XP_002444426.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
gi|241940776|gb|EES13921.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
Length = 112
Score = 140 bits (353), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/114 (60%), Positives = 88/114 (77%), Gaps = 3/114 (2%)
Query: 102 DEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS 161
++ + YAREDTHYLLYIYD+M+ +L +ES + L EV+KRS ++C Q YEKELL+
Sbjct: 1 NDQVLYAREDTHYLLYIYDLMRQRLQ---RESTFENNLLLEVHKRSNEICLQFYEKELLT 57
Query: 162 ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
+ SYLHIYGL+ L+A+QLAVVA L EWRD IAR +DESTGY+LPN+ LIEI
Sbjct: 58 DTSYLHIYGLREHELDAKQLAVVAALHEWRDSIARQEDESTGYILPNKALIEIG 111
>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386, partial [Cryptosporidium hominis]
Length = 875
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT D+++D L ++ L E+ +P KV+HG+D DI+WLQRDF +Y+ NMFDT
Sbjct: 325 LSTRTHDYIIDPFNLFNEIQ-MLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMFDT 383
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
GQA+R+L SL+ LL +C ++ +K +Q ADWR RPL +E++ YAR DTHYLLYIY
Sbjct: 384 GQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIY 443
Query: 120 DIMK 123
DIMK
Sbjct: 444 DIMK 447
>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
Length = 951
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 126/246 (51%), Gaps = 49/246 (19%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ED++VDT+ L + L+ VF +P+ KV HGAD D++WLQRDF I + N+FDT
Sbjct: 156 ISTQNEDYLVDTIALHDTLD-VLQPVFANPSICKVFHGADNDVLWLQRDFHIXVVNLFDT 214
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A +E DWR RPL EML YA+ D HYLLYI +
Sbjct: 215 -------------------------AKRE----DWRQRPLSVEMLEYAQTDAHYLLYIAN 245
Query: 121 IMKIKLSSMPKESENSDTP------LTEVYKRSYDVCRQLYEKEL--------LSENSYL 166
+ +L +SENS P + E +RS VC QLY KE+ S
Sbjct: 246 CLIAELRQ--HDSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISR 303
Query: 167 HIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
H+ G G A L +V LC WRD++AR DES YVL ++ +I +A ++PTT
Sbjct: 304 HLNGQGGISSKACDLQFQDLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQK 363
Query: 224 KLRRLL 229
++ L+
Sbjct: 364 EICTLI 369
>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
NRRL3357]
Length = 434
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D+VVDTLK + L EVF DP+ KV HG+ DI+WLQRD G+Y+ MFDT
Sbjct: 263 ISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDT 322
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A+K YQ ADWR+RP+P+ M YAR DTHYLL+I+D
Sbjct: 323 YHAACALNYPKRSLKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFD 382
Query: 121 IMKIKL 126
++ +L
Sbjct: 383 HLRNEL 388
>gi|50508632|dbj|BAD31028.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
gi|50509503|dbj|BAD31184.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
Group]
Length = 1031
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 101/185 (54%), Gaps = 28/185 (15%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
+ HGAD D++WLQRDF IY+ NMFDT +A VL + SL YLL +CGV +K Q D
Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQRED 362
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
WR+RPL EM++YAR D HYLLYI + + +L + K + SD+P ++
Sbjct: 363 WRLRPLTPEMIQYARCDAHYLLYIANCLASELHA--KTYDASDSPNDKI----------- 409
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E S+ + +V +C WRD++AR DES YVL ++ + +
Sbjct: 410 ---NFFFEASH------------RSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASL 454
Query: 215 AKQLP 219
A +P
Sbjct: 455 AVSVP 459
>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
Length = 228
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R ED++VDT+ L +G L VF DPT KV HGAD D++WLQRDF IY+ N+FDT
Sbjct: 95 ISTRNEDYLVDTIALHDVMGV-LAPVFADPTICKVFHGADNDVLWLQRDFHIYVVNLFDT 153
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
+A VL + SL YLL +CGV NK Q DWR RPL EML YA+ D HYLLYI
Sbjct: 154 AKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYI 211
>gi|414886884|tpg|DAA62898.1| TPA: hypothetical protein ZEAMMB73_296177 [Zea mays]
Length = 194
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
LR VF + + K+ HGAD DI+WLQRDF IY+ NMFDT +A +L + SL YLL +C
Sbjct: 4 LRPVFANSSICKIFHGADNDILWLQRDFHIYVVNMFDTAKACEILLKPQKSLAYLLEVYC 63
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE-SENSDTPLT 141
V +K Q DWR+RPL EM+ YAR D HYLLYI + + +L + + S +
Sbjct: 64 EVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSDKINFFF 123
Query: 142 EVYKRSYDVCRQLYEKEL-----LSENSYLHIYGLQGAGLNAQQLA----VVAGLCEWRD 192
E RS VC QLY KE+ S + + LQ G ++++ + +V C WRD
Sbjct: 124 EASHRSNMVCMQLYSKEIESPPGASSATSILSRNLQTHGFDSKKSSEVKDLVWKFCAWRD 183
Query: 193 VIA 195
++
Sbjct: 184 LMV 186
>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973195|gb|EED91526.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 181
Score = 134 bits (336), Expect = 2e-28, Method: Composition-based stats.
Identities = 61/120 (50%), Positives = 82/120 (68%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
DF++D L LR + L + +P KVMHGAD DI WLQRDFG Y+ N+FDTG+ASR
Sbjct: 61 DFLIDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRA 120
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
LK + L +LL + G++ +K +Q +DWR RPLPD+M YA DT YLL IYD ++++L
Sbjct: 121 LKFQSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLEL 180
>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 635
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 84/135 (62%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL + L EVF +P KV+HG+ D++WLQRD G+YL +FDT
Sbjct: 270 ISTRDKDWIVDTLLPWREELQILNEVFANPQIVKVLHGSSMDVIWLQRDLGLYLVGLFDT 329
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+ L + SL++LL F A K+YQ ADWRVRPL M YAR DTHYLLYIYD
Sbjct: 330 YHAAAALHYPKKSLKFLLDKFVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYIYD 389
Query: 121 IMKIKLSSMPKESEN 135
++ +L EN
Sbjct: 390 HLRNELIERSTPGEN 404
>gi|384247627|gb|EIE21113.1| 3'-5' exonuclease, partial [Coccomyxa subellipsoidea C-169]
Length = 165
Score = 132 bits (333), Expect = 5e-28, Method: Composition-based stats.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 1/126 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S ++++VD L L + L++V +D KV+HG + DI WLQRDF +YL N+FDT
Sbjct: 41 LSTGDKEYLVDALALHDHMH-LLQDVLEDARVVKVLHGGENDISWLQRDFHLYLVNVFDT 99
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A +VL E SL +LL +CGV ANK+YQ ADWRVRPL E++ YAR D H+L+YI D
Sbjct: 100 EKACQVLGYEERSLAHLLQRYCGVTANKQYQRADWRVRPLAKELVDYARTDVHFLVYIAD 159
Query: 121 IMKIKL 126
+++ +L
Sbjct: 160 VLRSEL 165
>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
Length = 879
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 25/264 (9%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+D+V+D + ++ L +V DP KVMHGA+ DI+WLQRDFG+Y+ N+FDT +A+
Sbjct: 364 DDWVIDPFSIFDEMW-RLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLFDTLKAAD 422
Query: 66 VLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK- 123
VL L +SL L+ HF G++ +K YQ ADWR+RP+P +ML YA DTHYLL +Y +K
Sbjct: 423 VLCLSCGHSLSSLVRHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSALKN 482
Query: 124 ------IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
+K ++P D + + S VC + Y + +E Q N
Sbjct: 483 TALEQDLKY-NIPGMVGCFDNHIWRIMLASKKVCLRQYRDPVFNEIP----RAFQALRKN 537
Query: 178 AQ--------QLAVVAGLCEWRDVIARADDESTGYVLPNR--TLIEIAKQLPTTAAKLRR 227
Q L ++ L +R+ AR DES ++ P+ ++ +A TA R
Sbjct: 538 RQCPSKVDSLSLNMMLNLISFRNYAARVLDESDSFLFPDYAAVIVAMAADSKNTAENFYR 597
Query: 228 LLKSKHSYIERYMGPVLSIIKNSM 251
+ + +++ + P L ++N++
Sbjct: 598 AMVRRLPLLDQEI-PYLLKLRNTL 620
>gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei]
gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei]
Length = 488
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
LK + SL YL F V +K+YQ ADWR RPL + M+ YAREDTHYLLY YD+++ +L
Sbjct: 4 LKYPKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQL 63
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
K+ L VY D+C ++Y+K + YL L+ N++Q +
Sbjct: 64 LKQDKKD------LNVVYSECNDLCVRVYKKPVFKPKGYLTDLKLRFT-FNSRQDHALTS 116
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 246
L +WRDV+AR +DES +VLPN L+ +A+QLP + ++++ G +L I
Sbjct: 117 LYKWRDVVARQEDESPQFVLPNHMLLALAEQLPRDVGGIYACCNPLPHFVKKLAGQILKI 176
Query: 247 IKNSMQNAANFEVIAQKLKEERMEVASEE 275
I V A+++K E+++V ++E
Sbjct: 177 I-----------VEAREVKLEKVKVTAKE 194
>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 311
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
+F++DT+ L+ + L V +P KV+HGAD DI WLQRDFG+Y+ N+FDT +A+
Sbjct: 187 VHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTMRAA 246
Query: 65 RVLKLERNSLEYLLHHFC-GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
R LK R S Y+L H+ G++A+K Q ADWRVRPLP+ + +YA +DT YLL IYD M+
Sbjct: 247 RALKFPRASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQDTAYLLDIYDRMR 306
Query: 124 IKLS 127
LS
Sbjct: 307 YDLS 310
>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 149
Score = 127 bits (320), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/108 (57%), Positives = 74/108 (68%), Gaps = 8/108 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R DFVVD L LR ++ +L F+D TK+KVMHGAD D+ WLQRDFGIY+ NMFDT
Sbjct: 42 VSTRERDFVVDALALRSKMRAHLARHFEDATKQKVMHGADMDVQWLQRDFGIYVVNMFDT 101
Query: 61 GQASRVLKLERNSL--------EYLLHHFCGVNANKEYQNADWRVRPL 100
GQA+RVL+L L Y L HFC V+A+K YQ ADWR RPL
Sbjct: 102 GQAARVLELPSKGLGAFYLTDAAYALKHFCDVDADKRYQLADWRRRPL 149
>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
Length = 431
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 330 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 388
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVR 98
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+R
Sbjct: 389 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIR 426
>gi|403223072|dbj|BAM41203.1| uncharacterized protein TOT_030000466 [Theileria orientalis strain
Shintoku]
Length = 820
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 118/217 (54%), Gaps = 9/217 (4%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E+++VD + ++ L V DP KVMHG+D DI WLQRDFG+Y+ NMFDT QA++
Sbjct: 469 ENYIVDPFDIFTKLN-ILNVVTTDPRILKVMHGSDNDIEWLQRDFGVYIVNMFDTRQAAK 527
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
VL L+ SL L+ + V NK+YQ ADW RPL +EML YA D++YL+ +Y MK +
Sbjct: 528 VLNLKEESLMKLIDKYFNVKMNKKYQLADWSKRPLDEEMLNYACSDSNYLIPLYIKMKNE 587
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVC-RQLYEKELLSENSYLHIY---GLQGAGLNAQQL 181
+ S + + + V S ++C Q + + ++ I ++ ++ Q
Sbjct: 588 ILS----TSDGKVKMIRVMNYSKNICLTQYVDNGVEMYRKFIRITKKNKIERKSMSFVQY 643
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 218
+ L E+R+ AR D S V+ + L + K+L
Sbjct: 644 NFMLNLLEFRNYAARKLDVSEQMVIRDYQLGLLVKKL 680
>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
Length = 703
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 81/119 (68%), Gaps = 4/119 (3%)
Query: 1 MSLRTEDFVVDTLK--LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
++ R +D++VD L + +++ + R + DP KV+HGAD D+ WLQRD YLCNMF
Sbjct: 586 IATRKKDYIVDVLAPGIMMKMHDFNR-ITSDPGIVKVLHGADMDVQWLQRDLSAYLCNMF 644
Query: 59 DTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLL 116
DTGQA+RVL+L SL+ LL +CG A+K Q ADWR RPL + M +YAR+D HYLL
Sbjct: 645 DTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQYARDDVHYLL 703
>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
Length = 201
Score = 122 bits (305), Expect = 9e-25, Method: Composition-based stats.
Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+++D + L ++ LR VF + KV HGAD DI+WLQRDF IY+ N+FDT
Sbjct: 75 ISTYKRDYLIDAIALHDEM-EILRPVFANAAICKVFHGADSDILWLQRDFHIYVVNLFDT 133
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
+A VL + SL YLL +C ++ NK +Q +DWR RPLP+++L YAR D H+LLYI
Sbjct: 134 ARACDVLGKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYARTDAHFLLYI 191
>gi|385304629|gb|EIF48639.1| putative nuclear exosome component rrp6p [Dekkera bruxellensis
AWRI1499]
Length = 607
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 62/308 (20%)
Query: 6 EDFVVDTLKLRVQVGPYL---REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQ 62
+D++VD L Q+ P+L VF +P KV HGA D++WLQRD G+Y+ ++FDT
Sbjct: 244 KDYIVDPLS--AQLRPHLSLLNIVFTNPDIIKVFHGAFMDMMWLQRDLGLYVVSLFDTYW 301
Query: 63 ASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
A++ L L + SL +LL + +K++Q ADWR+RPL EM YA+ DTH+L+ ++ +
Sbjct: 302 AAKELTLGKYSLAFLLEKYIHFRTSKKWQLADWRIRPLGPEMRNYAKADTHFLIELFGKI 361
Query: 123 KIKLSSMPKE--------------------------------SENSDTPLTEVYKR---S 147
+ +L P S PLT ++ S
Sbjct: 362 QXELIXKPGAMKRVLYHSRKVSNRRFEYATYKPRNATAFGVVSTGGSVPLTPEFQDALFS 421
Query: 148 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
+D R+L L+ N G+ + VV L +WRD AR +DES Y++
Sbjct: 422 FDTSRELPWLSLMRSN-----------GIPDTKGPVVEALYKWRDNKARKEDESIRYIMS 470
Query: 208 NRTLIEIAKQLP-------TTAAKLRRLLKSKH----SYIERYMGPVLSIIKNSMQNAAN 256
+ L +A T AA L + +S Y+ + + + +I++ M+ +
Sbjct: 471 DFVLTSLANSFSPGAIDQITEAAVLNVINRSARFGSSYYVRKCIKDLTVLIRDVMKQLSR 530
Query: 257 FEVIAQKL 264
++ A +L
Sbjct: 531 IDLKAWQL 538
>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
Length = 181
Score = 117 bits (294), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D++VDTL+L + P L EVF DP K+ GAD D++WLQRDFGIY+ N+FDT
Sbjct: 83 ISTDKTDYIVDTLQLWDHLQP-LNEVFCDPKIVKIFQGADSDVIWLQRDFGIYVVNLFDT 141
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 100
QA+ +L E+ SL +LL H+C V+ NK+YQ DWR+RPL
Sbjct: 142 FQAATLLGFEKKSLSFLLQHYCQVHVNKKYQLEDWRIRPL 181
>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
Length = 181
Score = 117 bits (292), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Query: 1 MSLRTE--DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
M + TE D++VDTL+L + P L EVF DPT K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 81 MQISTEKTDYIVDTLQLWDHLQP-LNEVFCDPTIVKIFQGADSDVIWLQRDFGIYVVNLF 139
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 100
DT QA+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 140 DTFQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Ogataea parapolymorpha DL-1]
Length = 729
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 37/251 (14%)
Query: 1 MSLRTE---DFVVDTL--KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC 55
M L T+ D+++D L +LR + L +F DP KV HGA DI+WLQRD G+Y+
Sbjct: 260 MQLTTDTKKDYLIDPLSPELRPHLV-NLNVIFTDPNIVKVFHGAFMDIIWLQRDLGLYVV 318
Query: 56 NMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL 115
++FDT ASR L L R+SL +LL + +K++Q ADWR+RPL EM YA+ DTH+L
Sbjct: 319 SLFDTYHASRELGLGRHSLAHLLETYVKFKTSKKWQLADWRMRPLNSEMKNYAKADTHFL 378
Query: 116 LYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR----------------------- 152
+ ++ M +L P + + +V R Y+
Sbjct: 379 IEVFYKMHSELVQNPDKLKKVLYESRKVSNRRYEYSTFKPRNVKSANGFSSGAEVVATNQ 438
Query: 153 ---QL--YEKELLSENSYLHIYGLQGAGLNAQQLA---VVAGLCEWRDVIARADDESTGY 204
QL ++ L+S ++ ++ A N+ +A ++ L +WRD AR +DES Y
Sbjct: 439 SVPQLPEFKNGLVSVHNPTNLPWSNLADSNSIPMAKRPLLEVLFKWRDEQARREDESPRY 498
Query: 205 VLPNRTLIEIA 215
++ + L+ +
Sbjct: 499 IMSDFMLVSLV 509
>gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis]
Length = 500
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 7/235 (2%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L ++F +P+ KVM A ++WLQRDFG+++ N+FD A ++L ++ S +L +
Sbjct: 256 LNDLFTNPSIVKVMFNAGDQLLWLQRDFGVFMVNLFDVQMALKLLDEKQTSFSDVLMNRM 315
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN------- 135
N ++ ADWR RPL MLR+AR+ H LY+ ++ +L + ++ N
Sbjct: 316 NEYINMRFRRADWRTRPLTAGMLRFARQTAHSTLYLSSMVIEQLQNESEKHINRVGDGRV 375
Query: 136 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
D + E ++C + Y K + + + G Q + L WRDV+A
Sbjct: 376 GDGQIVETLAACNELCLETYHKPVQTYETGESTIAELGQIFQPVQKMLFLSLYYWRDVVA 435
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
R DES YVLP L+++A +P T +LRRLL + E+ + + SI+++
Sbjct: 436 RELDESVQYVLPLLPLLKVAHAVPKTKEELRRLLSPLSATAEQRLDRLFSIVESC 490
>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
Length = 181
Score = 114 bits (284), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+++DTLKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+FDT
Sbjct: 83 ISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDT 141
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 100
QA+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 142 FQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
Length = 996
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 19/227 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S E++++D K+ ++ L + DP K+MHGA D+VWLQRDF I++ N+FDT
Sbjct: 515 LSTPEENYIIDPFKIFGKMNK-LNRLTTDPKILKIMHGASNDVVWLQRDFNIFVVNLFDT 573
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+A++VL L SL L+ + + NK +Q +DW RPL EML YA D+HYL+ +Y
Sbjct: 574 REAAKVLNLAEQSLAKLIQKYFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPLYS 633
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCR--------QLYEK-ELLSENSYLHIYGL 171
+K ++ S E+ + +V + C ++Y+K + +S+ + I L
Sbjct: 634 ALKDEILS----KEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIRIPEL 689
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 218
N ++ L +R+ +AR D+S ++ + + I K++
Sbjct: 690 DFVSYN-----LLLNLIAFRNFLARKLDKSEKLIIRDYQIALIIKRI 731
>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
Length = 181
Score = 113 bits (283), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S D+++DTLKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+FDT
Sbjct: 83 ISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDT 141
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 100
QA+ +L ++ L +LL H+C V+ +K+YQ DWR+RPL
Sbjct: 142 FQAASLLGFQKKGLSFLLQHYCQVHVDKKYQLEDWRIRPL 181
>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
Length = 421
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 129/242 (53%), Gaps = 15/242 (6%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+D+++D + L+ ++ L EVF +P K+ H A D+ WLQ+D G+++ N+FDT A +
Sbjct: 120 KDYIIDAIALKDELHA-LNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMK 178
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
L ++ L+ LL + V +K Q D+R RPLP + YAR D+HYL+ Y +K +
Sbjct: 179 ALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNE 237
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L L V + C+ LY K + + +YL + ++ +QL V+
Sbjct: 238 LIEA--------NLLRAVLDDCNNCCKILYPK--VEDEAYLSVRR-NVEEIHKRQLLVLE 286
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 245
L WR IA+ D++ G VL + + Q+P+ +A + ++ S+ S+++ ++ V+
Sbjct: 287 KLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADIMQI--SQSSHVKEHLDEVMQ 344
Query: 246 II 247
I+
Sbjct: 345 IL 346
>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
Length = 680
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S ++D+++D+L LR Q L V +P KV+HG D VWLQRDFG++L N+FDT
Sbjct: 159 LSTGSKDYLIDSLALR-QDMHLLAPVLSNPRICKVIHGGGNDAVWLQRDFGLFLVNVFDT 217
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEY-QNADWRVRPLPDEMLRYAREDTHYLLYIY 119
+A +VL + SL LL FCG+ A+K Q ADWR RPL E++ YAR D +LL I
Sbjct: 218 EKACQVLGYHQRSLGALLQRFCGIQADKSLGQRADWRRRPLSAELIDYARRDVQHLLTIA 277
Query: 120 DIMKIKL 126
D + +L
Sbjct: 278 DRLGHEL 284
>gi|406962736|gb|EKD89001.1| hypothetical protein ACD_34C00239G0001 [uncultured bacterium]
Length = 380
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 16/243 (6%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
DFV D + L +F++P ++K+ H ++ D++ L+RD+ N+FDT ASR+
Sbjct: 58 DFVFDPFEFSDL--SLLGSLFQNPKQEKIFHASEYDLICLKRDYHFKFINIFDTMIASRI 115
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L + L LL ++ +N +K+YQ A+W +RPLP EML YAR DT+YL + D +
Sbjct: 116 LGAPQVGLGSLLQNYFDINLDKKYQRANWGLRPLPPEMLDYARLDTYYLFKLRDRL---- 171
Query: 127 SSMPKESENSDTPLTEVYKRSY-DVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVV 184
ESE S+ L ++ + + + C+ N H + L G+G + +Q+ ++
Sbjct: 172 -----ESELSNHGLLDLAQEDFVNACKAAGHSN--GNNQEAH-WKLAGSGHADPRQVTIL 223
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 244
LC +RD AR D VL N L+E++ P T +L + ++R+ +L
Sbjct: 224 KELCTYRDEQARKADLPHFKVLSNDMLVEVSLHRPATLDELSLVPHFSEKLVKRHGSGLL 283
Query: 245 SII 247
+
Sbjct: 284 KAV 286
>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 377
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 129/242 (53%), Gaps = 15/242 (6%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+D+++D + L+ ++ L EVF +P K+ H A D+ WLQ+D G+++ N+FDT A +
Sbjct: 120 KDYIIDAIALKDELHA-LNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMK 178
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
L ++ L+ LL + V +K Q D+R RPLP + YAR D+HYL+ Y +K +
Sbjct: 179 ALGYKKLGLDALLQDY-HVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNE 237
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L L V + C+ LY K + + +YL + ++ +QL V+
Sbjct: 238 LIEA--------NLLRAVLDDCNNCCKILYPK--VEDEAYLSVRR-NVEEIHKRQLLVLE 286
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 245
L WR IA+ D++ G VL + + Q+P+ +A + ++ S+ S+++ ++ V+
Sbjct: 287 KLNSWRHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADIMQI--SQSSHVKEHLDEVMQ 344
Query: 246 II 247
I+
Sbjct: 345 IL 346
>gi|403371484|gb|EJY85623.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 1077
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 9/132 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S ++D+V+D LK + V Y++E+F DP+ K+ HG D DI L D I++ N+FDT
Sbjct: 878 ISTYSKDYVIDVLKTKEFVAQYIQEIFVDPSIVKIFHGCDSDIQILASDLDIFVVNLFDT 937
Query: 61 GQASR-VLKLERN--------SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYARED 111
+A + + KL N SLE L F G+ +K +Q +DWR+RPLP M+ YAR D
Sbjct: 938 ARAYQAIFKLPENAPKHVDLTSLESLCDKFLGIQLDKFFQVSDWRIRPLPQGMMDYARSD 997
Query: 112 THYLLYIYDIMK 123
+H+L+ +Y I +
Sbjct: 998 SHFLIPLYTIFQ 1009
>gi|373433349|emb|CCE67262.1| RRP6 protein, partial [Chironomus tentans]
Length = 133
Score = 108 bits (271), Expect = 7e-21, Method: Composition-based stats.
Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+D+++DT+ LR ++ L E+F + K+ HG+D DI WLQRD +Y+ NMFDT
Sbjct: 24 ISTRTKDYIIDTIALREELH-VLNEIFTRSSIIKIFHGSDCDIEWLQRDLCLYVVNMFDT 82
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRP 99
QA++ L L R SL +LL H+C + A+K +Q ADWR+RP
Sbjct: 83 HQAAKRLGLARLSLAFLLKHYCNIEADKSFQLADWRIRP 121
>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
Length = 380
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 117/234 (50%), Gaps = 14/234 (5%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D++VD L G L E+F +P +KV H A+ DI+ L+RDFG ++FDT A+R+
Sbjct: 58 DYLVDPLASVNLSG--LNEIFSNPGIEKVFHAAEYDILCLKRDFGFTFTHLFDTMIAARI 115
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L L LL GV +K YQ A+W RPLP ML YAR DTHYL+ + + + +L
Sbjct: 116 LGRSEVGLAALLEEHFGVTLDKRYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKEL 175
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVA 185
+E T L E D R +E+ + + G L QQ +++
Sbjct: 176 ------AERGLTALAE-----EDFLRVCETPAAPAESRPPMWWDVAGTTDLPPQQASLLQ 224
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
L E+R+ AR + VL N LI+IA+ P T L + ++++ERY
Sbjct: 225 ALVEFREQQARFANLPPFRVLSNAVLIQIAEANPMTLEDLAEVQGLSYAHLERY 278
>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
Length = 382
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 126/252 (50%), Gaps = 16/252 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTE +++D L L+ + P L + VMHGAD DI L RD GI + N+FDT
Sbjct: 54 ISTRTESWLIDPLALK-DLSP-LAAPLGNRDILIVMHGADYDIRSLHRDHGIEVTNLFDT 111
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
ASR+L + L LL G+ NK+YQ ADW RPL EM YA DT LL +YD
Sbjct: 112 MIASRLLGITEFGLAALLKARFGIELNKKYQKADWSKRPLSPEMRAYAVADTADLLRLYD 171
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 179
+++ +L E E + CR + + +SE +GAG L +
Sbjct: 172 MLRDEL------LEKGRLAWLE------EECRLVCQAR-VSEKEGPLFLACKGAGKLRGR 218
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
LAV+ L + RD AR D V+ TL+EIA++ P + A+L + I+R
Sbjct: 219 ALAVLEELLQLRDSQARELDRPPFKVISGDTLLEIAEKKPRSLAELSFIKGMTPGQIQRL 278
Query: 240 MGPVLSIIKNSM 251
VLS + +++
Sbjct: 279 GERVLSAVADAL 290
>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 964
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 7 DFVVDTLKLRVQVGPYL-REVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
DF++D + LR Q+ L + +F + TK K++HG + DI WL+ DF I + N+FDT A
Sbjct: 804 DFMIDAMALRNQINQLLNKSLFLNKTKIKILHGCENDIKWLKNDFDIDIVNLFDTMFAEM 863
Query: 66 VLKLERNS--LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
++K ++ S L+ L + GV +K YQ +DWR+RPLP M+ YAR D+ LL ++ IMK
Sbjct: 864 IIKNKQQSYSLKNLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARVDSFILLRLFPIMK 923
Query: 124 IKLSS 128
L+S
Sbjct: 924 QMLTS 928
>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
Length = 790
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 28/236 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S E++++D K+ ++ L + DP K+MHGA D++WLQRDF I++ N+FDT
Sbjct: 520 LSTPQENYIIDPFKIFGKMNK-LNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDT 578
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWR---------VRPLPDEMLRYARED 111
+A+ VL L SL L+ + + NK +Q ++W +RPL DEML YA D
Sbjct: 579 REAAIVLNLPEQSLAKLVQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCD 638
Query: 112 THYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR--------QLYEK-ELLSE 162
+HYL+ +Y+ +K ++ S E+ + +V + C ++Y+K + +S+
Sbjct: 639 SHYLIPLYNTLKDEILS----KEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISK 694
Query: 163 NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 218
+ I L N ++ + +R+ +AR D+S ++ + + + K++
Sbjct: 695 RHKIKIPELDFVSYN-----LLLNIIAFRNFLARKLDKSEKLIIRDYQIALLIKRM 745
>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
Length = 382
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 117/241 (48%), Gaps = 15/241 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
FV+DT+KL+ L+ +F D K+ HGAD D+ L RDF I + N+FD+ ASR L
Sbjct: 59 FVIDTIKLKEL--SLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLFDSELASRFL 116
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
++ LE ++ H V K++ DW RPL D+ML YA +D YL+ +Y+I+
Sbjct: 117 GVKETGLEAVIRHRFNVYLEKKFTKRDWSKRPLIDDMLHYAADDVRYLVPLYEIL----- 171
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAG 186
E E +D K D+ + E +L +GAG L + LAV+
Sbjct: 172 ----EKELNDIGRLFWVKEECDILCSVRPDANNGEPLFLK---FKGAGKLKPENLAVLEA 224
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 246
L +R IA D ++ N L+++A+ P + K+ ++ Y +LSI
Sbjct: 225 LLGFRKEIALKKDVPFFKIIGNAALLKLAETRPDSLNKIINTNVLSKRQMDMYGKDLLSI 284
Query: 247 I 247
I
Sbjct: 285 I 285
>gi|403368461|gb|EJY84065.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 547
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRDFGIYLCNMFDTGQA- 63
+ +++D LKLR ++ YL +F+ T K+ HG + DI WLQRDFG N+FDT ++
Sbjct: 131 QTYLIDCLKLREEIKTYLGAIFESHTTLKIFHGCVNSDITWLQRDFGFATVNVFDTQESY 190
Query: 64 SRVLKLERNSLEYLLHHFCG--VNANKE----YQNADWRVRPLPDEMLRYAREDTHYLLY 117
++ K +R SL +L +C V +KE +Q ADW +RPL EML YA D+HYL+Y
Sbjct: 191 KKLFKGQRVSLLHLWTTYCKDRVKISKEQKNMFQKADWSMRPLSSEMLNYAAHDSHYLIY 250
Query: 118 I 118
I
Sbjct: 251 I 251
>gi|383761955|ref|YP_005440937.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382223|dbj|BAL99039.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 395
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 30/315 (9%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
DF+VD L+L+ + P L E+ DP + VMH AD DI+ L R +G +FDT A+R+
Sbjct: 64 DFLVDPLRLK-DLSP-LGELLVDPAIEVVMHAADNDILMLYRSYGFRFGRVFDTQLAARI 121
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L ++ L +L G+ +NK Q DW RPL E + YA+ DTHYLL + D + +L
Sbjct: 122 LGWKQVGLAAILEKHFGIVSNKRMQRTDWGKRPLTPEQIAYAQMDTHYLLPLRDRLAEEL 181
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+ E D T S D ++ + E ++ + ++ + + L V+
Sbjct: 182 RRKGRWEEALDAFATLT---SSDPATRMPD-----ERTFWQMRAVR--TVPQECLGVLEA 231
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 246
L WR+ A++ D V+ + TLIE+AK P T L+ + R+ +L +
Sbjct: 232 LWRWREQKAQSLDRPPFKVVNDATLIELAKTQPLTLDALKETPGLSPLQVRRFGEELLQV 291
Query: 247 IKNSMQNAA----------------NFEVIAQKLKEERMEVASEE--TEVLVLDTSSNLK 288
I Q + L+ R EVA + +VL S+ L
Sbjct: 292 IHAGRQRPTPTPPDDEGRPEPMLDEAVQARYNALRRWRTEVAQQRGVDADIVLPNSALLA 351
Query: 289 IPNVGRESVDGVDAL 303
I + ++D + AL
Sbjct: 352 IATLNPATLDALAAL 366
>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
Length = 388
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 11/196 (5%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 85
+ +DP + V+H AD D+ L++D+G + ++FDT A+++L + L LL F G+
Sbjct: 72 LLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLGIRAFGLAALLEQFFGIK 131
Query: 86 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 145
+K++Q ADW +RPL +ML YA DT +LL + D + +L + S E +
Sbjct: 132 LDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWAQ-----EEFT 186
Query: 146 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 205
R+ +E E + S+L + G + LN ++LA + L WRD IA D +T V
Sbjct: 187 RAEGTR---WEPE-APDTSFLRLKGAR--DLNRRELARLRELVRWRDGIAAELDRATFRV 240
Query: 206 LPNRTLIEIAKQLPTT 221
N L+++A+Q P T
Sbjct: 241 AGNEVLLDLARQAPAT 256
>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
Length = 381
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 15/255 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R ++VD L+L + P LR + P + V+HG D DI L RDFGI + MFDT
Sbjct: 49 LSNRAGTWLVDPLRLS-DLSP-LRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDT 106
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++ L LL G+ +K +Q ADW RPL EM YA DT +LL + D
Sbjct: 107 MVAAQFTGATEFGLAALLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELAD 166
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 179
+ +L + + ++ C L + + + +GAG L +
Sbjct: 167 RLHARLEQLGRREWVAEE------------CALLVGNRVAEKGNGPLFLNCKGAGKLKPR 214
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
LA++ L ++RD AR D V+P L++IA+ +P + + + RY
Sbjct: 215 NLAILEALLQFRDQQAREADRPAFKVIPAEALLKIAELVPAAVRDMNGIAGLTPRLLGRY 274
Query: 240 MGPVLSIIKNSMQNA 254
+L++++ + A
Sbjct: 275 GEQLLTVVRQGLAVA 289
>gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex]
Length = 143
Score = 99.8 bits (247), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Query: 1 MSLRTE--DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
M + TE D+++DTLKL + P L +VF DP K+ GAD D++WLQRDFGIY+ N+F
Sbjct: 51 MQISTEKTDYIIDTLKLWDHLQP-LNKVFGDPNIVKIFQGADSDVIWLQRDFGIYIVNLF 109
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
T QA+ +L E+ L +LL H+C V+ NK+YQ
Sbjct: 110 YTLQAASLLGFEKKGLPFLLQHYCQVHVNKKYQ 142
>gi|404491882|ref|YP_006715988.1| ribonuclease D [Pelobacter carbinolicus DSM 2380]
gi|77544021|gb|ABA87583.1| ribonuclease D, putative [Pelobacter carbinolicus DSM 2380]
Length = 375
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 16/222 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S T +VD L V+ L V DPT +K+ H AD DI L RDF I + +FDT
Sbjct: 47 ISTSTRTVLVDPLA--VEDLAALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFDT 104
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A ++L +R L +L + V +K YQ ADW RPL + M+ YA EDT +L + +
Sbjct: 105 MIACQMLGEKRVGLADVLAKYLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRLTE 164
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQ 179
I++ +L M + S + L +K SEN+ ++GAG L +
Sbjct: 165 ILEGRLRDMGRLSWAEEE-------------FALLQKVRHSENNGPLFMRVKGAGLLERK 211
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
QLAV+ L +WRD A D V+ N+TL+ +A+ +P +
Sbjct: 212 QLAVLEQLLQWRDEEACRRDRPAFKVVGNKTLLGLAQIMPGS 253
>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
Length = 294
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 14/253 (5%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RT+DFVVD + V V P L E+ D ++ V+HGAD D+ L R++G + +FDT
Sbjct: 56 LSTRTQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGADYDVRCLHREYGWRIPRLFDT 111
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L L L+ GV +K +Q +DW RPL + L YA DTH+LL ++D
Sbjct: 112 MIAARRLGRPGLGLSALVESHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPLFD 171
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L+ + L E +K S + + + + + + G + L+A
Sbjct: 172 LLTGELA--------ARGALDEAWKESQRIASVVARERVFDPEGWRRVKGAR--ELDAPG 221
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
AV+ L R+ ARA D VL ++EIA++ P T L + S + R
Sbjct: 222 KAVLRALWIAREERARASDRPPFKVLGEPAMLEIARRRPATREALAAIPGVTPSVLGRMG 281
Query: 241 GPVLSIIKNSMQN 253
+ + +K + Q
Sbjct: 282 ETIAAALKAAGQG 294
>gi|381152499|ref|ZP_09864368.1| ribonuclease D [Methylomicrobium album BG8]
gi|380884471|gb|EIC30348.1| ribonuclease D [Methylomicrobium album BG8]
Length = 387
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 126/260 (48%), Gaps = 36/260 (13%)
Query: 1 MSLRTEDFV--VDTLKLRVQVGPYLREVFK---DPTKKKVMHGADRDIVWLQRDFGIYLC 55
+ + T D+V VD + L P L E+F+ +P KV+H + +D+ + G
Sbjct: 47 LQIATPDWVACVDPIAL-----PRLDELFEALYNPGIVKVLHSSRQDLEIFYQLTGKLPS 101
Query: 56 NMFDTGQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 114
+FDT A+ +L + N L+ H VN NK + ADW RPL +E ++YA +D Y
Sbjct: 102 PIFDTQVAAPLLGYQDNPGYAMLVSHLLNVNLNKAHTRADWSKRPLTEEEIQYAADDVIY 161
Query: 115 LLYIYDIMKIKLSSM-------PKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 167
L IY +M+ KLS++ P +E S+ L EV L E+++
Sbjct: 162 LCRIYQLMRDKLSALGRLDWLQPDFAELSNPALYEV----------------LPEHAWRR 205
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I G L +QL+++ L EWR+ A+ ++ G++L + L +IAK P TAA L +
Sbjct: 206 IKG--KNKLTGKQLSIIQALAEWRESTAQNENRPKGWLLRDELLFDIAKLQPETAADLAK 263
Query: 228 LLKSKHSYIERYMGPVLSII 247
+ + RY + II
Sbjct: 264 IRGINERTVSRYGAALCRII 283
>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
Length = 377
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 85
+F +P KK+ HGAD D+ L RDFGI + N+FDT AS+ L L LL GV
Sbjct: 79 IFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESEFGLAALLKKRFGVE 138
Query: 86 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESE---NS 136
+K YQ ADW RP EML YA +DT L+ +Y + K +L+ + +ESE
Sbjct: 139 LDKRYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGRLAWVEEESELVAGV 198
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIA 195
+P S L +GA + ++LAV+ L ++RD A
Sbjct: 199 RSP---------------------SREGELMCLRFKGANKMKPRELAVLEELLKFRDEKA 237
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 251
R D +L N L E+A++ P + +L + IER +L I N +
Sbjct: 238 RIADVPPFRILSNDLLRELAEKQPRSNFELVGIHTMSSKLIERLGRGLLQAIANGL 293
>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
Length = 377
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 13/223 (5%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+ FVVD L + L+ VF+DP KV HG+D DI L RDF I++ N+FDT A R
Sbjct: 52 DSFVVDPLS--IDDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACR 109
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
L +++ SL LL + +K +Q DW RPL EM+ Y+ D YLL + DI+K +
Sbjct: 110 FLGIQKRSLAALLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKR 169
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L D + +++ ++ +E +L G + + LAV+
Sbjct: 170 L---------EDEGRLAWAEEEFELQTRVRHDNNGNEPLFLKFKG--SGKMGRRSLAVLE 218
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
L ++R +A D+ ++ + + ++A P T L+ L
Sbjct: 219 SLLQFRKTLAVEKDKPLFKIISSEAIAKMAANQPETLHSLKEL 261
>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
Length = 288
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +DFVVD + V V P L E+ D ++ V+HGAD D+ L R++G + +FDT
Sbjct: 52 LSTRAQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGADYDVRCLHREYGWRIPRLFDT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L L L+ GV +K +Q +DW RPL + L YA DTH+LL ++D
Sbjct: 108 MIAARRLGRPGLGLSALVEAHFGVRLSKAFQRSDWGRRPLTPDQLAYASLDTHFLLPLFD 167
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L++ L E +K S + + + + + I G + L+A
Sbjct: 168 LLTGELATR--------GALEEAWKESQRIASVVARERVFDPEGWRRIKGSR--ELDAPG 217
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
AV+ L R+ ARA D VL ++EIA++ P T
Sbjct: 218 KAVLRALWIAREDRARASDRPPFKVLGEPAMLEIARRRPAT 258
>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
Length = 409
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 126/269 (46%), Gaps = 31/269 (11%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L + +P +KV HGAD D+ L RDFG + N+FDT AS+ L + L L
Sbjct: 99 LAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLFDTMIASQFLGEKEVGLAAALKKRF 158
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY----DIMKIK--LSSMPKESENS 136
GV +K+YQ ADW RP +M+ YA +DT L+ +Y D ++ K L+ + +ESE
Sbjct: 159 GVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRLAWVEEESE-- 216
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 196
++ V S D +E +L G A L + LAV+ L +RD AR
Sbjct: 217 --IVSCVRAASRD-----------NEPLFLRFKG--AAKLKPRSLAVLEKLLLFRDERAR 261
Query: 197 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
D +L N L E+A+ LP TAA L + I+ Y +L+++ + A
Sbjct: 262 KRDVPPFRILGNEPLRELAELLPRTAADLTGIPGISQKLIDTYGREILNVVAQGLSIPAE 321
Query: 257 F--------EVIAQKLKEERMEVASEETE 277
VI + +EER++ E E
Sbjct: 322 KLPHYPTVQRVIKDRYQEERLKRLKEWRE 350
>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
Length = 288
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +DFVVD + V V P L E+ D ++ V+HGAD D+ L R++G + +FDT
Sbjct: 52 LSTRAQDFVVDPIS--VDVRP-LGEILCD-GREVVLHGADYDVRCLHREYGWRIPRLFDT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L L L+ GV +K +Q +DW RPL + L YA DTH+LL ++D
Sbjct: 108 MIAARRLGRPGLGLSALVEAHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPLFD 167
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
++ +L++ L E +K S + + + + + I G + L+A
Sbjct: 168 LLTGELATR--------GALEEAWKESQRIASVVARERVFDPEGWRRIKGSR--ELDAPG 217
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTT 221
AV+ L R+ ARA D VL ++EIA++ P T
Sbjct: 218 KAVLRALWIAREDRARASDRPPFKVLGEPAMLEIARRRPAT 258
>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
Length = 377
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 116/249 (46%), Gaps = 17/249 (6%)
Query: 5 TEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
+ED ++D L + V+V L +F +P KK+ HGAD D+ L RDFGI + N+FDT A
Sbjct: 60 SEDRLIDPLAPIDVKV---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIA 116
Query: 64 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
S+ L L LL GV +K YQ ADW RP EML YA +DT L+ +Y ++
Sbjct: 117 SQFLGESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLE 176
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLA 182
+L + + + RS S L +GA + ++LA
Sbjct: 177 AELKQKGRLAWVEEESELVAGVRSP------------SREGELMCLRFKGASKMKPRELA 224
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 242
V+ L +RD AR D +L N L E+A++ P +L + IER
Sbjct: 225 VLEELLRFRDEKARLADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRG 284
Query: 243 VLSIIKNSM 251
+L I N +
Sbjct: 285 LLQAIANGL 293
>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
Length = 382
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L+ F DP KV+HGAD D+ L RDFGI + +FD+ ASR L ++ L +++
Sbjct: 72 LKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLFDSEIASRFLGVQSTGLNDVVNRRF 131
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
GV +K + DW RPLP++ML YA D YL+ +Y ++ +L M + ++
Sbjct: 132 GVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAE----- 186
Query: 143 VYKRSYDVCRQLYEKELLSENSYLH------IYGLQGAG-LNAQQLAVVAGLCEWRDVIA 195
E ELLS Y + +GAG L+ + LAV+ L R +A
Sbjct: 187 -------------ECELLSRVRYANGEDTPLFVRFKGAGRLSRRTLAVLEALLVARQKMA 233
Query: 196 RADDESTGYVLPNRTLIEIAKQLP 219
R D V+ N L+ +A++ P
Sbjct: 234 RKKDRPPFKVMGNDALLRLAQERP 257
>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
Length = 377
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 116/249 (46%), Gaps = 17/249 (6%)
Query: 5 TEDFVVDTLK-LRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
+ED ++D L + V+V L +F +P KK+ HGAD D+ L RDFGI + N+FDT A
Sbjct: 60 SEDRLIDPLAPIDVKV---LAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIA 116
Query: 64 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
S+ L L LL GV +K YQ ADW RP EML YA +DT L+ +Y ++
Sbjct: 117 SQFLGESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLE 176
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLA 182
+L + + + RS S L +GA + ++LA
Sbjct: 177 AELKQKGRLAWVEEESELVAGVRSP------------SREGELMCLRFKGASKMKPRELA 224
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 242
V+ L +RD AR D +L N L E+A++ P +L + IER
Sbjct: 225 VLEELLRFRDEKARLADVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRG 284
Query: 243 VLSIIKNSM 251
+L + N +
Sbjct: 285 LLQAVANGL 293
>gi|406573982|ref|ZP_11049722.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
gi|404556583|gb|EKA62045.1| putative ribonuclease D [Janibacter hoylei PVAS-1]
Length = 555
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + ++H A +D+ L D G+ +FDT A+R+L L R L ++ H+ G++ KE+
Sbjct: 103 TGEWILHAATQDLPCLG-DLGLRPRQIFDTELAARLLGLPRVGLAAVIEHYLGISLAKEH 161
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
DW RPLP+ LRYA D L + ++M I L++ K +E ++ ++
Sbjct: 162 SAVDWSTRPLPEPWLRYAALDVEVLTEVRNLMGIDLAAQDK---------SEWARQEFEA 212
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
L + + E+ + GL + LA V L RD IAR D S G V+P+
Sbjct: 213 L--LSWRPAVKEDPWRRTSGLHKI-RQPRVLATVRELWYERDRIARDRDTSPGRVIPDTA 269
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIER 238
L+EIA+ P+ L R H I+R
Sbjct: 270 LVEIAQANPSGPGDLPR----GHRAIQR 293
>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
Length = 390
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 106/235 (45%), Gaps = 20/235 (8%)
Query: 17 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 76
V + P L V D +KV HGAD D+ L RDFG+ +CNMFDT A + L + L
Sbjct: 78 VDLSP-LAPVLADRGIRKVFHGADYDMRSLYRDFGLEVCNMFDTMIACQFLGEKEVGLAA 136
Query: 77 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----E 132
L GV NK+YQ ADW RP EM+ YA+ DT L+ +Y ++ +L + + E
Sbjct: 137 ALKKRFGVELNKKYQKADWSKRPFSAEMIEYAKMDTALLIRLYLQLEEELRAKGRLEWVE 196
Query: 133 SENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRD 192
E+ R + E ++ G A L + LAV+ L RD
Sbjct: 197 EESELVSCVRAASRDH-------------EPLFIRFKG--AAKLKPRALAVLEELLRMRD 241
Query: 193 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
AR D +L N L E+A+ P T A L + IE + +L ++
Sbjct: 242 EKARKKDVPPFRILGNEPLRELAELQPRTLADLNGIPGLTQKLIETFGREILKVV 296
>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
Length = 354
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 19/201 (9%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 78
+G YL E MHGAD D+ +R FG ++DT +R+L R L L+
Sbjct: 65 LGSYLSEA------TVWMHGADYDMTMFKRQFGDLPKVVYDTQIGARLLGARRFGLGDLV 118
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 138
+ GV +K Q ADW RPL +M+ YA D HYLL + D++ KL + +
Sbjct: 119 SLYFGVELSKSSQKADWGKRPLSPKMIEYALNDVHYLLEMGDLIVTKLKDLGR------- 171
Query: 139 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARA 197
Y+ + C + L ++S + +QG+G L+ + LA + L WRD AR+
Sbjct: 172 -----YEWFLESCTAARRRVLDRDDSKEETWRIQGSGKLDRRGLAFLKELWTWRDSEARS 226
Query: 198 DDESTGYVLPNRTLIEIAKQL 218
D + V+PNR L+E + L
Sbjct: 227 WDRPSFMVVPNRQLLEWSVDL 247
>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
Length = 428
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ +FDT +R+L L R L ++ H+ G+ KE+ D
Sbjct: 120 ILHAATQDLACLA-EVGLRPVQLFDTELGARLLGLPRVGLAAVVEHYLGLALAKEHSAVD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L + ++M + L+ K + RQ
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKS----------------EWARQE 222
Query: 155 YEKELLSENSYLHIYGLQGAGLNA----QQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
+E L E + + +GLN + +AVV L RD IAR D S G +LP+
Sbjct: 223 FEALLTWEPTERVDPWRRTSGLNTIRSRRGVAVVRELWYARDDIARDRDTSPGRILPDAG 282
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
LI IA + PT+ A L S H I RY ++ +K +
Sbjct: 283 LISIATEAPTSPAD----LPSGHRAISRYGRQWVAAVKRA 318
>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
Length = 388
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 33 KKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQN 92
+K+ HGAD D+ L RDFGI L N+FDT A+R L + L LL GV K+YQ
Sbjct: 88 QKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEPQTGLAPLLESRFGVQLEKKYQK 147
Query: 93 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV-- 150
+W +RPLP EM+ YA DT +LL + +I+K KE D R + V
Sbjct: 148 KNWSLRPLPPEMMAYAANDTVHLLELAEILK-------KELVEKD--------RLFWVEE 192
Query: 151 -CRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
C L + N +GAG L+ + L V+ + RD +A+ + VL N
Sbjct: 193 ECEILTHARPMPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRDDLAKKWNRPLFKVLGN 252
Query: 209 RTLIEIAKQLPTTAAKLRRL 228
++E+A++ P L L
Sbjct: 253 TPILEMAQKRPLNTKGLVSL 272
>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
Length = 374
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L+ V D + +K+ H AD DI L RDF I + +FDT AS+ L E+ L +L +
Sbjct: 67 LKPVLADSSIRKIFHAADYDIRCLARDFDIEIRGLFDTMIASQFLGEEKVGLADVLGKYF 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
V +K +Q ADW RPL EM YA EDT +L + I++ P E E
Sbjct: 127 DVTLDKRFQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILE------PALKEKDRLWWVE 180
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDES 201
R L E+ + ++GAG + + LA++ L EWR+ A+ D
Sbjct: 181 EEFR-------LLEQAKFRVHDGPAFLRIKGAGTMPPRALAILECLLEWREKEAQRRDCP 233
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 249
V+ N+ L+ A+ +PTT L+ L + +RY VL I+
Sbjct: 234 AYKVVGNKPLLSAARHMPTTMEALKDLEEFPARLADRYGRAVLKQIET 281
>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
Length = 295
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 14/223 (6%)
Query: 7 DFVVDTLKLR-VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
D+++D L L+ + V L +F++P +KV+H A D++ L+RDF +FDT A +
Sbjct: 53 DYIIDPLSLKDLSV---LGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACK 109
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
+L ++ L +L GV+ NK +Q DW RPL + L YAR DTHYL+ + ++
Sbjct: 110 LLGYKQLGLSKILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAAD 169
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L S +E E ++++ + +Q+ EK +L I G L+A +++
Sbjct: 170 LQSRELWAEA-----CEAFEKASE--QQVPEKT-FHPRGFLQING--ARSLDAAGKSILK 219
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
L +R+ AR D + ++ N L+ +A P + ++ R+
Sbjct: 220 ALYMFREKEARRRDRAPFRIMSNEALLRLADARPDSVDEISRI 262
>gi|297727619|ref|NP_001176173.1| Os10g0437200 [Oryza sativa Japonica Group]
gi|255679435|dbj|BAH94901.1| Os10g0437200 [Oryza sativa Japonica Group]
Length = 89
Score = 90.9 bits (224), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
Query: 104 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 163
+ RYAREDTHYLLYIYD+M+++L KES + + L EVYKRS ++C QLYEKELL+ +
Sbjct: 8 LFRYAREDTHYLLYIYDLMRLRLV---KESSDENDLLLEVYKRSKEICLQLYEKELLTHS 64
Query: 164 SYLHIYGL 171
SYL+I+G
Sbjct: 65 SYLYIHGF 72
>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
Length = 381
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 21/252 (8%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
+++ +VD L ++ + P L +FK K+ HGAD DI L RDF I + +FDT A+
Sbjct: 55 SKNILVDPLAVK-DLSP-LAPIFKSFGICKIFHGADYDIRSLYRDFKIEVNALFDTQIAA 112
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK- 123
R L L L LL + K+YQ DW RPLP ML+YA DT +L+ + ++
Sbjct: 113 RFLGLTDIGLASLLQGKLNITLKKKYQKKDWSQRPLPAPMLQYAVHDTCHLIPLAQNLRE 172
Query: 124 --IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQ 180
+K +P E T D E L N GAG L+ +
Sbjct: 173 ELVKTGRLPFVEEECQLQTTVRSASPGD------EPLFLKFN---------GAGKLDRRS 217
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
LAV+ + ++RD AR D V+ N ++ +AKQ P +L+ + H ++
Sbjct: 218 LAVLEAILQYRDRTARRRDVPLFKVMGNAQVMALAKQKPVRMTELKHIKGLSHKQAKQLG 277
Query: 241 GPVLSIIKNSMQ 252
+L ++++++
Sbjct: 278 EGILKSVRHALK 289
>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
Length = 296
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VD L V P L EV D ++ V+HGAD D+ L+R++G +L +FDT
Sbjct: 53 VSTRAADYIVDPLA--VDPSP-LGEVLCD-GRETVLHGADYDVRCLRREYGWHLPRLFDT 108
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A+R L + L L+ GV +K +Q +DW RPL L YA DTHYLL + D
Sbjct: 109 MAAARRLGRQGLGLSALVEAHFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRD 168
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE-LLSENSYLHIYGLQGAGLNAQ 179
++ +L ++ +E +R ++ + +E + + + G + L+
Sbjct: 169 MLAGELDTLGA---------SEQARREFERIAAVVARERVFDPEGFRRLRGAR--ELDPA 217
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
LAV+ + R+ A D VL +I IA++LP A +L R+ S + R
Sbjct: 218 GLAVLRAIYVAREERASGLDRPPFKVLGEDAMIAIARRLPRDADELGRIPGVTPSVMRR 276
>gi|404498237|ref|YP_006722343.1| ribonuclease D [Geobacter metallireducens GS-15]
gi|418065969|ref|ZP_12703338.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
gi|78195834|gb|ABB33601.1| ribonuclease D, putative [Geobacter metallireducens GS-15]
gi|373561476|gb|EHP87711.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
Length = 382
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 85
VF +P+ +KV HGAD DI L RDFGI + N+FDT A + L L +L GV
Sbjct: 74 VFANPSIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQFLGEREFGLAAVLRKRFGVE 133
Query: 86 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLT 141
+K+YQ ADW RPL M+ YA +DT L+ + ++ +L + E E +
Sbjct: 134 LDKQYQRADWSRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALLARV 193
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
V +RS E +L G + + ++ LAV+ + +RD A+ D
Sbjct: 194 RVAQRSD------------GEPMFLRFKG--ASRMASRSLAVLEEILCFRDRRAQQMDVP 239
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
VL T+ E+A++ P + A+L + +ER
Sbjct: 240 PFKVLGTETVRELAEKKPRSLAELTGITGITERVVER 276
>gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
Length = 420
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ ++FDT A+R+L LER L ++ G+ KE+ D
Sbjct: 111 ILHAASQDLPGLA-EHGLRPASVFDTELAARLLGLERVGLAAVVADTLGLGLAKEHSAVD 169
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + LRYA D L + D++ +L+ K +E + ++ R
Sbjct: 170 WSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGK---------SEWAAQEFEAVRT- 219
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + + G + ++LAVV L E RD ARA D + G VLP+R ++
Sbjct: 220 APPPPPRVDPWRRVSGTHTL-RDRRKLAVVRALWEARDASARARDVAPGRVLPDRAIVAA 278
Query: 215 AKQLPTTAAKL 225
A LP TA +L
Sbjct: 279 ANALPRTAGQL 289
>gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
Length = 408
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A D+ +L++ + +FDT A R L R +L ++ H+ GV K + D
Sbjct: 93 VVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFHRVNLAAMVEHYLGVRLRKNHGGED 151
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RP+P E L YA D YLL + D M+ +L+ +P E D ++
Sbjct: 152 WSRRPIPSEWLDYAALDVEYLLPLADAMRSELT--------QQSPKDEWVAEECDYLTRV 203
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
Y + S+ + G++ ++QL V L + R+ +A+A D + +LP++TL+ +
Sbjct: 204 YRGYSPTPKSWEDLKGVRRLR-TSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVAL 262
Query: 215 AKQLPTTAAKL 225
A +LPTT K+
Sbjct: 263 ATELPTTVPKV 273
>gi|170782038|ref|YP_001710370.1| ribonuclease [Clavibacter michiganensis subsp. sepedonicus]
gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
sepedonicus]
Length = 443
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L EV +D + V+H A +D+ L R+ G+ +FDT ASR+L L R L ++
Sbjct: 114 LDEVIRD--VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLGLPRVGLGTVVEELL 170
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDT 138
G++ KE+ ADW RPLP L YA D L+ + D + +L K E E + T
Sbjct: 171 GIHLAKEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIAEQEFAAT 230
Query: 139 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
E + R+L S LH G++G + LAV L E RD AR
Sbjct: 231 IAKEAKPARVEPWRRL---------SGLH--GVRG----GRGLAVAKELWEARDAYAREV 275
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 243
D S G ++P+ +L+ +A+ LP T L + ++ S I+R+ V
Sbjct: 276 DTSPGRLVPDGSLVAVARILPQTKRDLAAVREFSGRASRSEIDRWWAAV 324
>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 496
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT ASR+L L R L ++ G++ KE+ AD
Sbjct: 177 VLHAASQDLACL-REVGLDPQRIFDTELASRLLGLPRVGLGTVVEELLGIHLAKEHSAAD 235
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 150
W RPLP L YA D L+ + D + +L K E E + T E +
Sbjct: 236 WSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEP 295
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+L S LH G++G + LAV L E RD AR D S G ++P+ +
Sbjct: 296 WRRL---------SGLH--GVRG----GRNLAVAKELWEARDAYAREVDTSPGRLVPDGS 340
Query: 211 LIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 243
L+ +A+ LP T L + ++ S I+R+ V
Sbjct: 341 LVAVARVLPQTKRDLAAVREFSGRASRSEIDRWWAAV 377
>gi|440793720|gb|ELR14896.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 317
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 8 FVVDTLKLRVQVGPY----LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
V DT+ L +Q P LR +D + HGA D+ +RDF I L +FDT +A
Sbjct: 55 LVFDTMAL-MQADPLALEPLRPYLEDGQRLIFAHGAANDVSTFKRDFDISLNGLFDTQRA 113
Query: 64 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
+++ L + ++ V+ +K+Y + +W +RP+ E LRYA ED YL + +++
Sbjct: 114 AQLAGLAHTNYGAVVESLLSVSLSKDYTHYNWGLRPIELEPLRYALEDVVYLPQVGHMLR 173
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLA 182
++ + E E + + S+ R+L + L ++ ++G G L+ QL
Sbjct: 174 ARVQELGVEEELAAVNRMLMAMPSHP--RRLDDLAL--------VHSIRGTGNLDPVQLG 223
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 218
V+ L WRD AR D G V+ N L++IA+ L
Sbjct: 224 VMGALFLWRDAKAREFDRPCGSVISNERLVKIARAL 259
>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
Length = 360
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A DI L+R GI++ N+FDT A R+L + + +L Y+ F V KEY +
Sbjct: 61 VIHAAINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVN 119
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPL + L YA D +LL + +K L +EN E + + V +
Sbjct: 120 WSARPLNKKYLEYAEGDVKHLLDLSQALKTAL-----RAENKLEIAKEEFSHVFMVVK-- 172
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ E+ + + H GL+ + Q AV L + RD IAR+ D T +L N+ + +
Sbjct: 173 HQSEIDKLDKFCH--GLE----DDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRIL 226
Query: 215 AKQLPTTAAKLRRLLK 230
AKQ+P L+ LLK
Sbjct: 227 AKQVPENLEILKTLLK 242
>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
Length = 391
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A DI L+R GI++ N+FDT A R+L + + +L Y+ F V KEY +
Sbjct: 92 VIHAAINDIKSLKR-VGIHITNLFDTEIACRLLNIPKVNLSYVTEKFINVKLRKEYSTVN 150
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPL + L YA D +LL + +K L +EN E + + V +
Sbjct: 151 WSARPLNKKYLEYAEGDVKHLLDLSQALKTAL-----RAENKLEIAKEEFSHVFMVVK-- 203
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ E+ + + H GL+ + Q AV L + RD IAR+ D T +L N+ + +
Sbjct: 204 HQSEIDKLDKFCH--GLE----DDMQRAVAKNLWKARDEIARSKDIFTPRILSNKAIRIL 257
Query: 215 AKQLPTTAAKLRRLLK 230
AKQ+P L+ LLK
Sbjct: 258 AKQVPENLEILKTLLK 273
>gi|408418343|ref|YP_006759757.1| ribonuclease D Rnd [Desulfobacula toluolica Tol2]
gi|405105556|emb|CCK79053.1| Rnd: ribonuclease D [Desulfobacula toluolica Tol2]
Length = 377
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 17/225 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E F+VD +++ ++ +L V ++ KV HG+D DI L RD+ + + N+FDT A R
Sbjct: 51 EAFLVDPFEIK-KISSFL-NVLENNDVMKVFHGSDFDIRSLDRDYHVQVNNLFDTEIACR 108
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
L ++ L LL V+A+K++Q DW RPL M+ Y+ D YL+ + DI+ +
Sbjct: 109 FLGIKERGLAALLKRNFDVDADKKFQKVDWAQRPLKQAMIEYSVGDVAYLVELQDIIHGR 168
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQL-YEKELLSENSYLHIYGLQGAG-LNAQQLAV 183
L + + K +++ Q+ YE + +++ +GAG ++ + LAV
Sbjct: 169 LKEKKRLAWA---------KEEFEIQAQVRYE----NNHTFPLFKKFKGAGKMDNRSLAV 215
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ L + R IA+ D+ V+ N +L+ +A + P T ++ ++
Sbjct: 216 LENLLQMRLSIAQKKDQPLFKVISNPSLMTMACEKPLTIDRILKI 260
>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
Length = 352
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 18/220 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKD-PTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S+ D ++D L G L+ +F+ K+ ++HGAD D+ L+R +FD
Sbjct: 45 ISVPGHDLLIDPL-----AGISLQPLFEAFAGKELIIHGADYDLRLLRRVGFTVTAPVFD 99
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+R+ +E SL L+ + V K Q A+W RPL +M YA +DTHYLL I
Sbjct: 100 TMIAARLCGIEEFSLAALIKRYFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIA 159
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA-GLNA 178
I++ +L+ + + E +++S D + + + E ++ + G+ L
Sbjct: 160 GILEAELTRLDR---------MEWFRQSCD--KAVAASAITKERDPEEVWRITGSKDLRG 208
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 218
+ A++ L WR+ A+A D T ++L + LIE A +L
Sbjct: 209 RASAILRALWHWREAEAQAVDRPTFHILHSEQLIEAAAKL 248
>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1087
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +FV+D L L V +L+ +F+ P KV HG + D+ L++D L N+FDT
Sbjct: 920 LSTLSSNFVIDILNLSKSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNFNLVNIFDT 979
Query: 61 GQASRVLKLERN------SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHY 114
+A L++N SL L + N +K+YQ +DWR+RPLP ML YA D+
Sbjct: 980 AKAY----LKQNKGAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLNYAMYDSFI 1035
Query: 115 LLYIYDIMKIKLS 127
L ++ +MK +S
Sbjct: 1036 TLILFFVMKSTIS 1048
>gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
ATCC 33806]
gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
ATCC 33806]
Length = 408
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A D+ +L++ + +FDT A R L R +L ++ ++ GV K + D
Sbjct: 93 VVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFHRVNLAAMVEYYLGVRLRKNHGGED 151
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RP+P E L YA D YLL + D M+ +L+ +P E D ++
Sbjct: 152 WSRRPIPSEWLDYAALDVEYLLPLADAMRSELT--------QQSPKDEWVAEECDYLTRV 203
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
Y + S+ + G++ ++QL V L + R+ +A+A D + +LP++TL+ +
Sbjct: 204 YRGYSPTPKSWEDLKGVRRLR-TSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVAL 262
Query: 215 AKQLPTTAAKL 225
A +LPTT K+
Sbjct: 263 ATELPTTVPKV 273
>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea blandensis MED297]
gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
Length = 380
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 17/245 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D L++ P +R V DP KV+H D L G+ L N+FDT A+ L
Sbjct: 55 WLIDPLQIN-DWAPLVR-VLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFL 112
Query: 68 -KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
+ S L+ C V KE +DW RPL DE YA D +L +Y +L
Sbjct: 113 GHPVQMSYARLVEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQL 172
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVA 185
+ +N + E D R + + SY L+GA L ++L V+
Sbjct: 173 -----KEQNRYAWVAE------DSQRMVSNNRPVPPQSYYQ--KLRGAWKLKGERLLVLQ 219
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 245
LCEWR+ +ARA + + G +L ++ LI +A+++PT+ + L++ + I Y +++
Sbjct: 220 LLCEWRENLARATNSNRGRILQDKDLITLAEKMPTSRSMLQKQVNIPSRKIRLYGDELIA 279
Query: 246 IIKNS 250
+I+ +
Sbjct: 280 MIERA 284
>gi|403714102|ref|ZP_10940065.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
gi|403211772|dbj|GAB94748.1| ribonuclease D [Kineosphaera limosa NBRC 100340]
Length = 434
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ +FDT R+ L R L +L H+ GV KE+ D
Sbjct: 127 ILHAATQDLPCLA-EVGMRPQQLFDTELGGRLAGLPRVGLSAVLEHYLGVRLAKEHSAVD 185
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L + D + L K ++ RQ
Sbjct: 186 WSTRPLPEPWLRYAALDVELLAELRDAVAADLREQGK----------------WEWARQE 229
Query: 155 YEKELLS-------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
+E LLS + + G+ + + +V L RD IAR D + G VLP
Sbjct: 230 FEA-LLSFTGPPPRVDPWRRTSGIHKVR-GRRNVGIVRDLWLARDQIARTRDIAAGRVLP 287
Query: 208 NRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 253
+ L+++A+ P T+A L + S+H + RY L+ I+ ++
Sbjct: 288 DAVLLQLAQATPRTSADLPSI--SRHKAVGRYGETWLNAIRTGLER 331
>gi|333985394|ref|YP_004514604.1| ribonuclease D [Methylomonas methanica MC09]
gi|333809435|gb|AEG02105.1| ribonuclease D [Methylomonas methanica MC09]
Length = 385
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 81
L +V +P KV+H +D+ + G +FDT A+ +L + N L+ F
Sbjct: 66 LFDVIYNPEIVKVLHSCRQDLEIFFQITGRIPGPIFDTQIAAPLLGFQENPGYAMLVSSF 125
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSD 137
+N +K + DW RPL ++ ++YA +D YL IY M +L + + ES+ +
Sbjct: 126 LNINLSKAHTRTDWTQRPLSEDQIQYAADDVIYLCKIYTTMCEQLEKLGRLDWLESDFAL 185
Query: 138 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
E+Y+ S EN++L I G L +QL+++ L EWR+ A+
Sbjct: 186 LNNAELYQLS-------------PENAWLKIRG--KNKLTGRQLSILQSLSEWREQTAQT 230
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 252
+++ ++ P+ L+E+AK P T A L ++ + RY + +I + Q
Sbjct: 231 ENKPRNWLFPDDMLLELAKLQPVTLADLGKIRNINERSVNRYGKTLCELIDVARQ 285
>gi|359689033|ref|ZP_09259034.1| ribonuclease D [Leptospira licerasiae serovar Varillal str.
MMD0835]
Length = 372
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ++++ D ++L G L +F++P K+ H A DI L+RDFG N+ DT
Sbjct: 33 ISSKGKNYIFDPIRLDDLNG--LGPLFENPNILKIFHSASDDIKALKRDFGFKFINIADT 90
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 91 MFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLESIWT 150
Query: 121 IM 122
M
Sbjct: 151 KM 152
>gi|385792618|ref|YP_005825594.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
Length = 364
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLV----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+TL IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKTLYTIA 243
>gi|418749157|ref|ZP_13305449.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
gi|418757399|ref|ZP_13313587.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384117070|gb|EIE03327.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404276226|gb|EJZ43540.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
Length = 389
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ++++ D ++L G L +F++P K+ H A DI L+RDFG N+ DT
Sbjct: 50 ISSKGKNYIFDPIRLDDLNG--LGPLFENPNILKIFHSASDDIKALKRDFGFKFINIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 108 MFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLESIWT 167
Query: 121 IM 122
M
Sbjct: 168 KM 169
>gi|398334995|ref|ZP_10519700.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 366
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 28 ISAKGKNYIIDPLKLQNLDG--LGTLFEDKKILKIFHSAIDDIKALKKDFGFKFVNIADT 85
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 86 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 145
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 146 KMKEELT 152
>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
Length = 411
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ +FDT A R+L L R L L+ HF G + KE+ AD
Sbjct: 104 ILHAATQDLPCLA-EIGLRPRALFDTEHAGRLLNLPRVGLATLVEHFLGRSLAKEHSAAD 162
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ L YA D L+ + D++ D L E KR + Q
Sbjct: 163 WSTRPLPEPWLVYAALDVEVLVELRDLL--------------DAELREAGKREW--AAQD 206
Query: 155 YEKELLS-------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
+E LLS + G+ + LA+V L RD IA D + G +LP
Sbjct: 207 FEA-LLSFTGPPEKTERWRRTSGMHRVR-GRRTLALVRALWLTRDEIAEHRDTTPGRILP 264
Query: 208 NRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ-NAANFEVIAQK 263
+ L+EIA P A L+ L + RY+ ++N++ A+ + Q+
Sbjct: 265 DAALVEIATAAPQDMATLKGLRGLRGQGPRRYLSQWHDAVENALALPEADLPTVGQR 321
>gi|398348927|ref|ZP_10533630.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 389
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ++++ D ++L G L +F++P K+ H A DI L+RDF N+ DT
Sbjct: 50 ISSKGKNYIFDPIRLADVSG--LGPLFENPAILKIFHSASDDIKALKRDFSFKFVNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 MFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLDKSQLQYAALDTVYLESIWE 167
Query: 121 IMKIKLS 127
M+ +L+
Sbjct: 168 KMREELA 174
>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
Length = 442
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 17/218 (7%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F+VD + + P L+E + + ++H A +D+ L + G+ +FDT A R+L
Sbjct: 95 FLVDPIPFVIL--PQLQEALEG--TEWILHAATQDLPCLA-EVGLLPSRLFDTELAGRLL 149
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
R L L+ G KE+ DW RPLP+ L YA D L + D++ +L
Sbjct: 150 GYPRVGLATLVETLLGSRLAKEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELE 209
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K E ++ +D R + E + +++ GL + LA V L
Sbjct: 210 TAGK---------AEWARQEFDALRSFVQAERV--DAWRRTSGLHRVR-GRRALAAVRAL 257
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
E RD IA D + G +LP+ ++ A+ +PT A L
Sbjct: 258 WETRDEIAENRDVTPGRILPDSAIVAAAQAMPTDRATL 295
>gi|398343905|ref|ZP_10528608.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 389
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + ++++ D ++L G L +F++P K+ H A DI L+RDF N+ DT
Sbjct: 50 ISSKGKNYIFDPIRLADVSG--LGPLFENPAILKIFHSASDDIKALKRDFSFKFVNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
+SR+L LE+NSL YL+ H+ V +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 MFSSRLLDLEQNSLLYLVEHYHKVKLSKKEQKSNWEKRPLDKSQLQYAALDTVYLESIWE 167
Query: 121 IMKIKLS 127
M+ +L+
Sbjct: 168 KMREELA 174
>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|422939063|ref|YP_007012210.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|407294214|gb|AFT93120.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
Length = 364
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
Length = 364
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
Length = 364
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752196|ref|ZP_16189228.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|421754061|ref|ZP_16191044.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|421757785|ref|ZP_16194655.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|421759628|ref|ZP_16196457.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|424674949|ref|ZP_18111861.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085560|gb|EKM85698.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|409085718|gb|EKM85850.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|409090457|gb|EKM90474.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|409091730|gb|EKM91720.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|417434204|gb|EKT89163.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
Length = 364
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|357404370|ref|YP_004916294.1| ribonuclease D [Methylomicrobium alcaliphilum 20Z]
gi|351717035|emb|CCE22700.1| Ribonuclease D [Methylomicrobium alcaliphilum 20Z]
Length = 386
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 81
L EV +P KV H +D+ + G +FDT A+ +L + N L+ F
Sbjct: 67 LFEVIYNPKIIKVFHSCRQDLEIFYQLTGKIPQPIFDTQIAAPLLGYQENPGYAMLVSSF 126
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSD 137
+N +K + DW VRPL L+YA +D YL IY M KL+ + + ES+ +
Sbjct: 127 LNINLSKAHTRTDWTVRPLSQAQLQYAADDVIYLCQIYQTMLKKLAELNRLDWLESDFAM 186
Query: 138 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
E+Y E+ +N++L I G L +QL++V L EWR+ A+
Sbjct: 187 LNDPELY-------------EISPKNAWLKIRG--KNKLTGKQLSIVQTLAEWREQTAQK 231
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRL------LKSKHSYI 236
+D ++L + + E+AKQ P T ++ ++ + SKH I
Sbjct: 232 EDRPRNWLLRDDMMFELAKQQPGTVEEMLKVHNINERMVSKHGKI 276
>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
Length = 364
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
gi|423051113|ref|YP_007009547.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|421951835|gb|AFX71084.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
Length = 363
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|418720286|ref|ZP_13279484.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|418738363|ref|ZP_13294758.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410743264|gb|EKQ92007.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|410745856|gb|EKQ98764.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456888486|gb|EMF99469.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200701203]
Length = 388
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 168 KMKEELT 174
>gi|410941522|ref|ZP_11373317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
gi|410783321|gb|EKR72317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
Length = 372
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D KV H A DI L++DFG N+ DT
Sbjct: 28 ISAKGKNYIIDPLKLQNLEG--LGNLFEDKKILKVFHSAIDDIKALKKDFGFQFQNIADT 85
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 86 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 145
Query: 121 IMK 123
M+
Sbjct: 146 KMR 148
>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|254370381|ref|ZP_04986386.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717133|ref|YP_005305469.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|379725737|ref|YP_005317923.1| ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|385794536|ref|YP_005830942.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|421755410|ref|ZP_16192356.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|377827186|gb|AFB80434.1| Ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|377828810|gb|AFB78889.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|409088212|gb|EKM88289.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
Length = 364
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 388
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 168 KMKEELT 174
>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 445
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
LRE + + ++H A +D+ L + G+Y +FDT A R+L R SL ++
Sbjct: 108 LREAIA--SAEWIIHAATQDLPCLV-EIGLYPSRLFDTELAGRLLGFPRVSLGTMIEQHF 164
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
GV+ KE+ ADW RPLP + + YA D L+ + +++ +L + K+ E +D E
Sbjct: 165 GVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELRNLVADELVAAGKK-EWAD----E 219
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+ DV R ++ + + H G + + LA+V L E RD IAR D++
Sbjct: 220 EFAHLVDVYRHPQQR---PGDPWRHTSGSHHVR-SRRGLALVRALWEQRDEIARELDKAP 275
Query: 203 GYVLPNRTLIEIAKQLPT------TAAKLRRLLKSKHSYIERY 239
G ++P++ + E+A ++ TA + +++ + +Y +RY
Sbjct: 276 GKIVPDKAISELASEVTKDSEKMPTARDMNKIMGFRRTYAKRY 318
>gi|344943543|ref|ZP_08782830.1| ribonuclease D [Methylobacter tundripaludum SV96]
gi|344260830|gb|EGW21102.1| ribonuclease D [Methylobacter tundripaludum SV96]
Length = 389
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 12/226 (5%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 81
L E P+ KV H +D+ + G +FDT A+ +L + N L+
Sbjct: 68 LFEAIYSPSIVKVFHSCRQDLEIFYQLTGKLPEPLFDTQIAAPLLGFQENPGYAMLVSSL 127
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
VN NK + ADW RPL D ++YA +D YL IY +M KL+ + + +E +
Sbjct: 128 LNVNLNKAHTRADWSKRPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGR-AEWLERDFA 186
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
E+ LYE + E ++L I G L +QL++V L EWR+ A+ +D
Sbjct: 187 ELANPD------LYEVK--PEKAWLKIKG--KNKLTGRQLSIVQALAEWREKAAQTEDRP 236
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
++L + L ++AK P T ++L + + RY + +I
Sbjct: 237 KSWLLRDEMLFDLAKLQPETVSELANVRAINERTVNRYGAELCQLI 282
>gi|398332245|ref|ZP_10516950.1| ribonuclease III [Leptospira alexanderi serovar Manhao 3 str. L 60]
gi|456860990|gb|EMF79700.1| 3'-5' exonuclease [Leptospira weilii serovar Topaz str. LT2116]
Length = 388
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 168 KMKEELT 174
>gi|421099052|ref|ZP_15559712.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
gi|410797786|gb|EKR99885.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
Length = 388
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 168 KMKEELT 174
>gi|359729247|ref|ZP_09267943.1| ribonuclease D [Leptospira weilii str. 2006001855]
gi|417777730|ref|ZP_12425544.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
gi|410782027|gb|EKR66592.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
Length = 388
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 168 KMKEELT 174
>gi|389581646|ref|ZP_10171673.1| ribonuclease D [Desulfobacter postgatei 2ac9]
gi|389403281|gb|EIM65503.1| ribonuclease D [Desulfobacter postgatei 2ac9]
Length = 404
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 16/204 (7%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 80
P+ R + ++P KV HG+D D+ L R+ + + N+FDT A R L ++ L LL
Sbjct: 93 PFSR-ILENPEIIKVFHGSDFDVRSLDRELSVEIENLFDTEIACRFLNIKERGLGALLKS 151
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES-ENSDTP 139
F ++ +K+YQ DW RPL +EM+ Y+ D L+ ++D++K +L + + + +
Sbjct: 152 FFDIDVDKKYQKVDWSKRPLKEEMIAYSVGDVATLVDLHDLLKERLEKIGRLAWAEEEFE 211
Query: 140 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARAD 198
L K + R L+ + +GAG L+ + LAV+ L E R A
Sbjct: 212 LQARVKYESNHSRPLFRR-------------FKGAGKLDNRSLAVLEHLLEVRLSEAEKK 258
Query: 199 DESTGYVLPNRTLIEIAKQLPTTA 222
D ++ N++++ + + PT+
Sbjct: 259 DLPPFKIMSNQSILTMVQHRPTSV 282
>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
Length = 381
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 11/225 (4%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVN 85
+F + +KV HGAD DI L RDFGI + N+FDT A ++L L L GV
Sbjct: 74 LFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGEREFGLAAQLRKRFGVE 133
Query: 86 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYK 145
+K+YQ ADW RPL M+ YA +DT L+ +Y + +L + +
Sbjct: 134 LDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEE-------- 185
Query: 146 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 205
++ ++ E E +L G + ++ + LAV+ L +RD AR D V
Sbjct: 186 -ECELLSRVRVAERGDEPFFLRFKG--ASRMDGRTLAVLEELLLFRDGRARQFDVPPFKV 242
Query: 206 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L T+ E+A++ P +L+ + RY +L ++
Sbjct: 243 LGTDTVRELAERRPRLPEELQGITGLTDKVAARYGEGILRAVERG 287
>gi|421095097|ref|ZP_15555810.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
gi|410361807|gb|EKP12847.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
Length = 439
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL+ G L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 101 ISAKGKNYIIDPLKLQNLDG--LGNLFEDKKILKIFHSAIDDIKALKKDFGFKFHNIADT 158
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 159 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 218
Query: 121 IMKIKLS 127
MK +L+
Sbjct: 219 KMKEELT 225
>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 69 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 126
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 127 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 186
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 187 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 232
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 233 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 269
>gi|456877521|gb|EMF92536.1| 3'-5' exonuclease [Leptospira santarosai str. ST188]
Length = 366
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKLR G L +F++ K+ H A DI L++DFG N+ DT
Sbjct: 28 ISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADT 85
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 86 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 145
Query: 121 IMKIKL 126
MK +L
Sbjct: 146 KMKDEL 151
>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
Length = 374
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D L+++ +GP L ++ D KV+H A D+ G+ +FDT A +L
Sbjct: 58 LIDPLEIQ-DLGP-LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLLN 115
Query: 69 LERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L ++ Y L+HH+ G+ +K DW RPL ++ L YA D +YLL +Y +M+ +
Sbjct: 116 LG-GAMGYGKLIHHYLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAI 174
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
M + L +++ CR + + +YL + L +QLAV+
Sbjct: 175 EEMGR--------LDWLWQEGERACRGRLKPD-DPNKAYLKVKN--AWQLKPKQLAVLKA 223
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 246
L WR +A D + +V+ + L+ +A++ P + A L + I+RY +L +
Sbjct: 224 LAAWRLGVAEQKDLALSFVVKDAALLNLARRAPRSMAYLANMDCLHEREIQRYGKTLLRV 283
Query: 247 I 247
I
Sbjct: 284 I 284
>gi|346310745|ref|ZP_08852758.1| ribonuclease D [Collinsella tanakaei YIT 12063]
gi|345897238|gb|EGX67165.1| ribonuclease D [Collinsella tanakaei YIT 12063]
Length = 377
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E V+D + + + P L + +D KV H +D+ L G +FDT A+
Sbjct: 48 ECVVIDVIAID-NLAP-LAILMRDEGTVKVFHACSQDMEVLNYTLGALPAPIFDTQVAAA 105
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L ER Y ++H FCGV K DW RPL E + YA +D YL+ YD++
Sbjct: 106 FLG-ERMQASYNGMVHAFCGVTLPKSESLTDWSRRPLTPEQIEYALDDVRYLIKAYDVIM 164
Query: 124 IKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+L + S D PLT+ + Y V R++ K + NS L +QL
Sbjct: 165 ERLDKSGRASWVLDEIKPLTD--RSHYVVDRRVAFKRVKRVNS-----------LTRRQL 211
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
AV L WR+ A + +++ + LI ++K+ P AA LRR+
Sbjct: 212 AVARELAAWREARAEYSNIPRKWLMSDEVLIALSKRPPHDAASLRRV 258
>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
Length = 437
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 115 VLHAASQDLPGLAEQH-LVPSAVFDTELAARILGMERVGLAAVVAEVLGLGLAKEHSAVD 173
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D L+ + D M +L + K TE ++ ++ R L
Sbjct: 174 WSTRPLPDAWLLYAALDVEVLVELRDRMAERLEAAGK---------TEWARQEFEAVR-L 223
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + G A+QLAVV L RD AR D + G VLP+R ++
Sbjct: 224 TGPAAPRVEPWRRVSGSHTL-RQARQLAVVRELWLTRDENARKRDIAPGRVLPDRAIVAA 282
Query: 215 AKQLPTTAAKLRRL 228
A+ +P T L +L
Sbjct: 283 AQAMPRTVPALTKL 296
>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
Length = 364
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTLK ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLK-DLEFKK-LKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L Y+ +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYSIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|421121879|ref|ZP_15582169.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
gi|410345216|gb|EKO96335.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
Length = 388
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|441508350|ref|ZP_20990274.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
gi|441447378|dbj|GAC48235.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
Length = 432
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + E P + V+H AD+D+ L R+ G + +FDT A R+L
Sbjct: 86 FLLDPISEPEALAPVI-EALDGP--EWVLHAADQDLPCL-RELGFHCETVFDTELAGRLL 141
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ +L ++ G+ K + ADW RPLPD+ L YA D L+ + D ++ L
Sbjct: 142 GEPKVNLAAMVATHLGLGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVQAALI 201
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ E + V R R + + + +H N + LA V L
Sbjct: 202 EAGKD-EWARQEFQHVLDRPAPPPR----IDRWRKTANVHTVK------NGRSLAAVREL 250
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
C R+ +A+ D + G +LP+ ++ A +PT+ A+L RL
Sbjct: 251 CSAREELAQRRDVAPGRILPDSAIVTAANAMPTSVAELTRL 291
>gi|108760811|ref|YP_634116.1| ribonuclease D [Myxococcus xanthus DK 1622]
gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
Length = 389
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 19/269 (7%)
Query: 1 MSLRTED--FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
+ L T+D F++DTL+ V G L + DP + K H A D+ +L + G+ + +F
Sbjct: 49 LQLATDDQVFLLDTLQPGVVPG-MLAPLMADPARTKFFHAAQGDLQFLA-EVGVRVQGLF 106
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
DT +A+ +L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 107 DTHRAATLLGWPKVGLADLARERLGVELPKEHQQSDFSIRPLPPGMREYIANDVRYL--- 163
Query: 119 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
+L +++ L EV +C + + + + L AGLN
Sbjct: 164 -----CELGRQVRDACREADILEEVLLDCVRLCDEAAARPDVGADFK---PKLPRAGLNP 215
Query: 179 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
Q+ A+ L R A D+ G +L N L +IA +LPT +L R+ + S
Sbjct: 216 TQMTLAHAIAHALHRKRLEWAEKDNVPMGRMLSNMALGDIAVKLPTNPKELARMAGVRGS 275
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQK 263
+I + +L++++ ++ + E+ ++
Sbjct: 276 FIRSHGEELLAVVRELLEKSRRGELAPER 304
>gi|456983567|gb|EMG19831.1| 3'-5' exonuclease [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 388
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|429730644|ref|ZP_19265290.1| putative ribonuclease D [Corynebacterium durum F0235]
gi|429147082|gb|EKX90112.1| putative ribonuclease D [Corynebacterium durum F0235]
Length = 397
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 14/213 (6%)
Query: 16 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLE 75
R ++G L+ + T V+H A D+ LQ +FG + +FDT A R+ +R +L
Sbjct: 73 RTELGEILKPLLNSTTW--VLHAAVSDLPSLQ-NFGWFPTRLFDTEVAGRLAGFDRVNLA 129
Query: 76 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 135
++ G++ K +DW RP+P L YA D LL + D M L++ K
Sbjct: 130 AMVEKVLGLHLAKGLAQSDWSRRPIPAAWLTYAALDVEVLLELADSMAAILTADGK---- 185
Query: 136 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
T ++ ++ R L ++ +E+++ + G+ QLAV L R+ IA
Sbjct: 186 -----TAWAEQEFEHIR-LQARQPQAESTWQDMKGI-SVLTRPPQLAVAQALWTTREAIA 238
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D S G VL NR L+++A+ LPT+ +L ++
Sbjct: 239 LRKDLSPGRVLRNRVLLDVARTLPTSPVELAKI 271
>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|386075688|ref|YP_005990008.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|417761741|ref|ZP_12409746.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|417771399|ref|ZP_12419294.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417772941|ref|ZP_12420827.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|417785994|ref|ZP_12433691.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|418667421|ref|ZP_13228833.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671067|ref|ZP_13232422.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|418683302|ref|ZP_13244507.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692063|ref|ZP_13253144.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|418702415|ref|ZP_13263323.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704115|ref|ZP_13264995.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710116|ref|ZP_13270898.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418728912|ref|ZP_13287481.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|421083604|ref|ZP_15544478.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|421101603|ref|ZP_15562215.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115524|ref|ZP_15575929.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421126273|ref|ZP_15586510.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421135637|ref|ZP_15595758.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|353459480|gb|AER04025.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|400324875|gb|EJO77159.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400358126|gb|EJP14242.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|409942474|gb|EKN88086.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|409946596|gb|EKN96605.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409950823|gb|EKO05345.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|410012826|gb|EKO70912.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020301|gb|EKO87105.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410368775|gb|EKP24151.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433965|gb|EKP78302.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|410436223|gb|EKP85342.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410577276|gb|EKQ40272.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|410581930|gb|EKQ49736.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|410757024|gb|EKR18642.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758584|gb|EKR24813.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766337|gb|EKR37024.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769574|gb|EKR44805.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410776315|gb|EKR56294.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|455667095|gb|EMF32456.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455792168|gb|EMF43937.1| 3'-5' exonuclease [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823784|gb|EMF72221.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966971|gb|EMG08438.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 388
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
Length = 379
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L+E+ ++P K++H +D+ L +FDT A+ L + R + Y L+ +
Sbjct: 66 LKELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGM-RQQVSYAGLVEN 124
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES----ENS 136
F V K DW RPL E L YA +D YL IY+ M KL + + S E
Sbjct: 125 FANVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLKPEMD 184
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 196
+ Y+R +YL + + L +QLA+ +C WR+ IA
Sbjct: 185 QHTNIDQYRRD-------------PYQAYLRLK--RSGSLTRRQLAIAREVCAWREEIAA 229
Query: 197 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D +VL + +IEI +++PTT+ +LR++
Sbjct: 230 KRDVPRKWVLSDELIIEICRRVPTTSDRLRKI 261
>gi|359684501|ref|ZP_09254502.1| ribonuclease D [Leptospira santarosai str. 2000030832]
gi|410449393|ref|ZP_11303448.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
gi|410016618|gb|EKO78695.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
Length = 388
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKLR G L +F++ K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
Length = 399
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 31/241 (12%)
Query: 1 MSLRTE---DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+ LRTE ++D L + LR + + ++ V+H A +D+ L + G+ +
Sbjct: 61 VQLRTEAAGTALIDPLAFTMPA--TLRSLLAE--REWVLHAAGQDLPSLA-EIGLEPGGL 115
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT A+R+L +ER L ++ G+ KE+ ADW RPLP+ L YA D L+
Sbjct: 116 FDTELAARLLGMERVGLGAVVEDTLGLRLAKEHSAADWSRRPLPEGWLTYAALDVEVLVE 175
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN------SYLHIYGL 171
+ D+++ +L KE D RQ +E E + E+ S+ ++GL
Sbjct: 176 VRDVLRERLREACKE----------------DWARQEFEHERVREHGPTRSSSWRGLHGL 219
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKS 231
G +QLA + + RD IA +D S V+ +R L+ AK+ P R L +
Sbjct: 220 GGLR-TPRQLAAAREMWQRRDEIAAGEDLSPHRVIKDRDLVAGAKEAPRGREAFDRALPA 278
Query: 232 K 232
K
Sbjct: 279 K 279
>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella novicida U112]
gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella novicida FTE]
gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
Length = 364
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTL+ ++ L+E+F+D K++H A DI ++R F + N+FDT
Sbjct: 43 LATENEIFLIDTLE-DLEFKK-LKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFDT 100
Query: 61 GQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + ++SL+ LL + KE Q +DWR RPL L YA +D YL+ +
Sbjct: 101 QLAATFLGFQTQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 120 DIMKIKLSSMPKESENSD---TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ ++ +L+ +SE D L EV K ++ EN + I +Q
Sbjct: 161 EYLQQQLA----KSEYQDFFEQELIEVQKTQFNSI----------ENIHAKIGNIQKFDE 206
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
Q+ A++ + +WR+ IA+ + ++ N+ L IA
Sbjct: 207 KTQRNAIL--IAQWRETIAQEKNIPVRFIFNNKILYTIA 243
>gi|397603830|gb|EJK58534.1| hypothetical protein THAOC_21330 [Thalassiosira oceanica]
Length = 452
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 104 MLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSEN 163
M YA DT YLL IYD ++++L + + D + V RS VC Y+KE +
Sbjct: 1 MRTYALSDTRYLLDIYDQLRLELDT----HSSPDVSIEVVLDRSKQVCLVRYDKEPFQPS 56
Query: 164 SYLHIY--GLQGAG----LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQ 217
+Y I G +G L +Q A + L +WRD AR +DES +V PN +L+ IA
Sbjct: 57 AYKSIINKGRRGGKVVTQLTQKQDASLKALYDWRDATARKEDESIFFVCPNASLVRIASN 116
Query: 218 LPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 254
P T L+RLL + R +L + + NA
Sbjct: 117 HPKTVNALQRLLNPTPPLVMRRSQEILDALSSLAANA 153
>gi|418715523|ref|ZP_13275644.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
gi|418727334|ref|ZP_13285929.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|409959575|gb|EKO23345.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|410788424|gb|EKR82142.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
Length = 388
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLENLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWE 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|392943949|ref|ZP_10309591.1| ribonuclease D [Frankia sp. QA3]
gi|392287243|gb|EIV93267.1| ribonuclease D [Frankia sp. QA3]
Length = 520
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPSLLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAAD 156
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQDK---------IEFARQEFAAIAAA 207
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E +E + G+ A + +QLA V + RD +ARA D + G VLP+ +++
Sbjct: 208 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWTARDRMARARDVAPGRVLPDSAIMDA 265
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
P A L RL I R L ++++
Sbjct: 266 VLNAPADTAALIRLPIFSGPRIRRTASTWLDALRSA 301
>gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1]
gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1]
Length = 418
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 20/218 (9%)
Query: 32 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++ ++H A +D+ L R+ G+Y +FDT +R+ L R L ++ HF G++ KE+
Sbjct: 96 EEWILHAATQDLTCL-REVGLYPTRLFDTELGARIAGLPRVGLGTVVEHFLGIHLAKEHS 154
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD-- 149
+ADW RPLP L YA D L+ + + + L S K ++ ++ +D
Sbjct: 155 SADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKH---------DIAQQEFDSV 205
Query: 150 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 209
+ R L ++ + + G+ + LAV L RD A+ D + G ++P+
Sbjct: 206 LARDLI---IVRAEPWRRLSGVHSVR-GGKNLAVARELWVARDAYAQEVDTAPGRLVPDS 261
Query: 210 TLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 243
L+ A+ LP T +L L ++ + ++R+ +
Sbjct: 262 ALVAAARVLPETKRQLSALKEFSGRASRTQLDRWWAAI 299
>gi|421110867|ref|ZP_15571356.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
gi|410803772|gb|EKS09901.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
Length = 366
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKLR G L +F++ K+ H A DI L++DFG N+ DT
Sbjct: 28 ISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADT 85
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 86 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWG 145
Query: 121 IMKIKL 126
MK +L
Sbjct: 146 KMKDEL 151
>gi|375101467|ref|ZP_09747730.1| ribonuclease D [Saccharomonospora cyanea NA-134]
gi|374662199|gb|EHR62077.1| ribonuclease D [Saccharomonospora cyanea NA-134]
Length = 413
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR + P L EV KD + V+H A +D+ L + G++ +FDT A R+
Sbjct: 79 FLIDPIPLRDDLAP-LAEVMKD--AEWVLHAASQDLPCLA-ELGLHPPALFDTELAGRLA 134
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R +L L+ G K + ADW RPLP + L YA D L+ + D ++ +L+
Sbjct: 135 GYQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLRDKLEAELA 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K E + ++ R SE + G+ A+ LA V L
Sbjct: 195 ASGK---------LEWALQEFEAVRTAEPPGPRSE-PWRRTSGIHKI-RTARGLAAVRAL 243
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
E RD +AR D + G +LP+ +I P + A L++L
Sbjct: 244 WEARDELARKRDRAPGRILPDSAIINAVLADPRSPADLQKL 284
>gi|358460925|ref|ZP_09171099.1| 3'-5' exonuclease [Frankia sp. CN3]
gi|357074601|gb|EHI84090.1| 3'-5' exonuclease [Frankia sp. CN3]
Length = 438
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPTRLFDTELAGRLLGYERVGLGMMVERVLGFGLEKGHSAAD 156
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D + +L+ K E + +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALTAELTETGK---------LEFALQEFAAIAAA 207
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E +E + G+ A + +QLA V + RD IAR D + G VLP+ +I+
Sbjct: 208 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRSMWTARDKIARVRDIAPGRVLPDSAIIDA 265
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
P AA+L +L + R G ++ + +
Sbjct: 266 VLSAPADAAELVKLPVFSGPRLRRSAGVWMTALTQA 301
>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
Length = 376
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 24/213 (11%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN---MFDTGQASRVLKLERNSLEY--L 77
L ++F D K+ H +D L+ + I+ C +FDT A+ L R + Y L
Sbjct: 63 LCKLFLDKKITKIFHACSQD---LELIYDIFSCLPKPVFDTQVAAAFLG-HRFQIGYGPL 118
Query: 78 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 137
+ C V+ K DW RPL +E L YA +D YL +YD + +L KE E
Sbjct: 119 VDALCHVHLPKAESLTDWTRRPLAEEQLEYAADDVRYLPRMYDTLLHEL----KEKERYA 174
Query: 138 TPLTEVYKRSYDVCRQLYEKELLS--ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
L E++ +VC E ++ + +YLH+ + + L +QLA+ + WRDVIA
Sbjct: 175 WFLEEMH----EVCN---EHHVIKKPQEAYLHMRRI--SSLTRKQLAIAREIGIWRDVIA 225
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D +V+P+ +I++ K +P T +L R+
Sbjct: 226 SHKDIPRKWVIPDEIVIDLCKSVPKTMERLERI 258
>gi|418752957|ref|ZP_13309213.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|422002805|ref|ZP_16350040.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
gi|409966640|gb|EKO34481.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|417258550|gb|EKT87937.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
Length = 388
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKLR G L +F++ K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWG 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
Length = 525
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G++ ++FDT A R+L ER L ++ G K + AD
Sbjct: 133 VLHAASQDLPCLA-ELGLHPTSLFDTELAGRLLGYERVGLGAMVERVLGFALEKGHSAAD 191
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L V + D RQ
Sbjct: 192 WSTRPLPEPWLRYAALDVELLVELRDRLEAEL----------------VERDKIDFARQE 235
Query: 155 YE-------KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
+ +E +E + G+ A +QLA V + + RD +AR D + G VLP
Sbjct: 236 FAAIAAAPPREPRAE-PWRRTSGIHRARTR-RQLAAVRAMWQARDKVARTRDLAPGRVLP 293
Query: 208 NRTLIEIAKQLPTTAAKLRRL 228
+ +++ + P A L RL
Sbjct: 294 DGAIMDAVLKAPADIAALTRL 314
>gi|418746085|ref|ZP_13302416.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
gi|410792916|gb|EKR90840.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
Length = 388
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKLR G L +F++ K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYILDPLKLRNLDG--LGTLFENKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWG 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|405355820|ref|ZP_11024932.1| Ribonuclease D [Chondromyces apiculatus DSM 436]
gi|397091092|gb|EJJ21919.1| Ribonuclease D [Myxococcus sp. (contaminant ex DSM 436)]
Length = 378
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 25/267 (9%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
E F++DTL+ V V L + DP + K H A D+ +L + G+ + +FDT +A+
Sbjct: 44 AEVFLLDTLQPGV-VPDMLAPLMADPARTKFFHAAQGDLQFLA-EVGVRVQGLFDTHRAA 101
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
+L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 102 TLLGWPKVGLADLARERLGVELPKEHQQSDFSIRPLPPGMREYIANDVRYL--------C 153
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 184
+L +++ L EV D R E + + L +GLN QL +
Sbjct: 154 ELGRQVRDACREADILEEVL---LDCVRMCDEAAARPDVGADYKPKLPRSGLNPTQLTLA 210
Query: 185 AGLC--------EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI 236
+ EW A ++ G +L N L +IA +LPTT +L R+ + S++
Sbjct: 211 HAIAQVLHRKRLEW----AEKENVPMGRMLSNMALGDIAAKLPTTQKELARMAGVRGSFV 266
Query: 237 ERYMGPVLSIIKNSMQNAANFEVIAQK 263
+ +L++++ ++ + E+ ++
Sbjct: 267 RTHGDELLALVREQLEKSRRGELAPER 293
>gi|453382611|dbj|GAC82906.1| ribonuclease D [Gordonia paraffinivorans NBRC 108238]
Length = 429
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 112/245 (45%), Gaps = 15/245 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + E + P + V+H AD+D+ L R+ G ++DT A R+L
Sbjct: 77 FLLDPIADPDALAPVI-EALRGP--EWVLHAADQDLPCL-RELGFVCVELYDTELAGRLL 132
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L + +L ++ F G+ K + ADW RPLPD+ L YA D L+ + D M L
Sbjct: 133 GLSKVNLAAMVAQFLGLGLVKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAMDAALV 192
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ + + +Y + R +I+ ++ +A+ LA V L
Sbjct: 193 EAGKDRWARE-------EFAYILSRPPAPPRTDRWRKTSNIHTVK----SARALAAVREL 241
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
R+ +A D + G VLP+ ++ A P T+A+L RL R G L+ +
Sbjct: 242 WTAREQLAERRDIAPGRVLPDAAIVNAATADPKTSAELTRLPVFGGPRQRRQAGIWLNAL 301
Query: 248 KNSMQ 252
K + +
Sbjct: 302 KRARE 306
>gi|417767687|ref|ZP_12415623.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400349705|gb|EJP01993.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
Length = 388
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL +YA DT YL I++
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQFQYAALDTVYLETIWE 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|398340441|ref|ZP_10525144.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
gi|418693755|ref|ZP_13254804.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|421106132|ref|ZP_15566708.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
gi|409958332|gb|EKO17224.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|410008854|gb|EKO62514.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
Length = 388
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWA 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|418679035|ref|ZP_13240300.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418685440|ref|ZP_13246616.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740873|ref|ZP_13297249.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089663|ref|ZP_15550467.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|421131604|ref|ZP_15591784.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|400320450|gb|EJO68319.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410001487|gb|EKO52083.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|410356978|gb|EKP04263.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|410740048|gb|EKQ84770.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410751468|gb|EKR08445.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 388
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S + +++++D LKL Q L +F+D K+ H A DI L++DFG N+ DT
Sbjct: 50 ISAKGKNYIIDPLKL--QNLESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQFQNIADT 107
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
G +SR+L E+ SL YL+ ++ + +K+ Q ++W RPL L+YA DT YL I+
Sbjct: 108 GFSSRLLDHEQYSLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWA 167
Query: 121 IMK 123
MK
Sbjct: 168 KMK 170
>gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c]
gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c]
Length = 440
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGLRPTTLFDTELAGRLLGYERVGLGMMVERVLGFGLEKGHSAAD 156
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D + ++L+ K + + +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALAVELAETGK---------LDFAHQEFAAIVAA 207
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E +E + G+ A + +QLA V + RD IAR D + G VLP+ +I+
Sbjct: 208 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWSARDKIARTRDIAPGRVLPDSAIIDA 265
Query: 215 AKQLPTTAAKLRRL 228
P A +L +L
Sbjct: 266 VLNAPADATELVKL 279
>gi|386775372|ref|ZP_10097750.1| ribonuclease D [Brachybacterium paraconglomeratum LC44]
Length = 452
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 32 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++ V+H A +D+ L + G++ +FDT A+R+L +ER L ++ G+ KE+
Sbjct: 144 REWVLHAAGQDLPSLA-ELGLHPGGLFDTELAARLLGMERVGLGAVVEDTLGLRLAKEHS 202
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
ADW RPLP+ L YA D L+ + D++ +L +E+ +D E +++
Sbjct: 203 AADWSKRPLPESWLVYAALDVEVLVQVRDVLAQRL----EEAGKADWAAREF---AHERT 255
Query: 152 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
R E +S+ ++GL GA +QLA + RD +A D S V+ +R L
Sbjct: 256 R---EHGPTRSSSWRGLHGL-GALRTVRQLAAAREMWTRRDELASEADLSPHRVIKDRDL 311
Query: 212 IEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ AK+ P R L SK + +R+
Sbjct: 312 VAAAKEAPRGREAFDRALPSKMRHKDRWW 340
>gi|111221533|ref|YP_712327.1| ribonuclease D [Frankia alni ACN14a]
gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a]
Length = 545
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 117 VLHAASQDLPCLA-ELGLRPALLFDTELAGRLLGYERVGLGMMVERVLGYGLEKGHSAAD 175
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 176 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQDK---------LEFARQEFAAIVAA 226
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E +E + G+ A + +QLA V + RD +AR D + G VLP+ +++
Sbjct: 227 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRAMWTARDRMARTRDVAPGRVLPDSAIMDA 284
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
P A L RL I R L ++++
Sbjct: 285 VLNAPADTAALIRLPIFSGPRIRRTASTWLDALRSA 320
>gi|407647033|ref|YP_006810792.1| ribonuclease D [Nocardia brasiliensis ATCC 700358]
gi|407309917|gb|AFU03818.1| ribonuclease D [Nocardia brasiliensis ATCC 700358]
Length = 417
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + + P L D + V+H AD+D+ L + G+ +FDT R+
Sbjct: 75 FLIDPIPVTDALAP-LAAAIND--LEWVLHSADQDLPGLA-ELGLRPQRLFDTELGGRLA 130
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER L ++ + G K + ADW RPLPDE L YA D LL + D + +L
Sbjct: 131 GFERVGLAAMVENLLGHALRKGHGAADWSTRPLPDEWLNYAALDVELLLELRDAVAAELD 190
Query: 128 SMPK------ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+ K E E+ T TE D R+ S +H A+QL
Sbjct: 191 AQGKSDWAAQEFEHVRT--TEPPAPKADRWRR---------TSGIHTL------RRARQL 233
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
AVV L RD +ARA D + +LP+ +I P T A+LR L
Sbjct: 234 AVVRELWTTRDGLARARDVAPARILPDAAIIAAVTADPKTIAQLRGL 280
>gi|350552229|ref|ZP_08921434.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
gi|349794882|gb|EGZ48690.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
Length = 391
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 13/235 (5%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYL 77
+ P+L +P KV+H A +D+ G +FDT A +L ++ L
Sbjct: 64 LSPFL-ACLHNPAITKVLHAASQDLELFYCLDGRVPAPIFDTQLAGALLGYGDQAGYAKL 122
Query: 78 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 137
+ GV +K+ DW RPL LRYA +D YL +Y +M +LS +
Sbjct: 123 VSAMLGVELDKDMTRTDWSQRPLSAAQLRYAEDDVRYLAQLYPLMHTQLS---------E 173
Query: 138 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
T E + + E ++ I G Q L QLAV+A L WR+ A
Sbjct: 174 TRRLEWLASDFAALSEARHYESQPAKAWKRIKGHQT--LRGPQLAVLASLASWRESEAMR 231
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 252
+ +++ + L+++A+Q P TA KL R+ + RY G +L+ I Q
Sbjct: 232 ANRPRRWIIADDPLLDMARQQPNTAEKLARIRGVNEGSLRRYEGALLNAIAQGKQ 286
>gi|378549176|ref|ZP_09824392.1| hypothetical protein CCH26_03785 [Citricoccus sp. CH26A]
Length = 385
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A R+L L R L +L GV KE+ AD
Sbjct: 70 ILHAATQDLPCLS-ELGMWPDRLFDTELAGRILGLPRVGLASVLEQLLGVTLAKEHSAAD 128
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDT-----PLTEV 143
W RPLP++ LRYA D L+ + M KL +E E T P T+
Sbjct: 129 WSKRPLPEDWLRYAALDVELLVELRAAMVGMLEASGKLDWAEEEFEAIRTTPLPGPRTDP 188
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++R+ S +H QQLAVV L E R+ +AR D + G
Sbjct: 189 WRRT----------------SGMHKLR------RPQQLAVVRELWEAREALARNRDTAPG 226
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++P+ ++ A P+T L
Sbjct: 227 RLIPDSAIVSAAAAQPSTVPAL 248
>gi|379057275|ref|ZP_09847801.1| 3'-5' exonuclease [Serinicoccus profundi MCCC 1A05965]
Length = 421
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +DI L + G+ +FDT +R+ L R L +L ++ GV KE+ D
Sbjct: 100 VLHAATQDIPCLA-ELGLRPRALFDTELGARLAGLPRVGLSAVLEYYLGVTLAKEHSAVD 158
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK--ESENSDTPLTEVYKRSYDVCR 152
W RPLP+ LRYA D L+ + D M+ L K +E L E +
Sbjct: 159 WSTRPLPEPWLRYAALDVELLVELRDRMERDLREQGKLDWAEQEFAALCEFTGPAGS--- 215
Query: 153 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
E E + +H + LA + L + RD IA+ D G VLP+ TL+
Sbjct: 216 --EEPEAWRRTTGVHRLR------KRRSLAALRELWQTRDTIAQERDVPPGRVLPDGTLL 267
Query: 213 EIAKQLPTTAAKL 225
++A+++P AA L
Sbjct: 268 DLAQRMPRQAAAL 280
>gi|404421224|ref|ZP_11002947.1| ribonuclease D [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403659237|gb|EJZ13893.1| ribonuclease D [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 420
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLS-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGH 166
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYD 149
ADW RPLP E L YA D LL ++ ++++ +E +D E Y R+Y
Sbjct: 167 GAADWSKRPLPPEWLNYAALDVEVLLE----LRHAVAAVLEEQGKTDWAAQEFEYLRTY- 221
Query: 150 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 209
Q ++ S +H N Q LA V L RD IAR D + G +LP+
Sbjct: 222 -VAQPTRRDRWRRTSGIHKV------RNPQALAAVRELWTTRDTIARGRDIAPGRILPDS 274
Query: 210 TLIEIAKQLPTTAAKL 225
+I A P T +L
Sbjct: 275 AIINAATTDPKTVEEL 290
>gi|374585390|ref|ZP_09658482.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
gi|373874251|gb|EHQ06245.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
Length = 377
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 1 MSLRTEDFVVDTL-KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD 59
+S ++ F++DTL KL +Q L +F K+ H A D+ +R +G N+FD
Sbjct: 47 ISTDSQHFIIDTLAKLELQ---RLAHIFAGQNIPKIFHAAASDMGEFRRQYGWSFANVFD 103
Query: 60 TGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
T A+R L+ E SL L+ + GV K+ Q ++W RPL L YA DT +Y+Y
Sbjct: 104 THMAARYLRHEACSLLALVQRYVGVELEKKEQKSNWMKRPLTKSQLDYAHLDT---VYLY 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE-----NSYLHIYGLQGA 174
IM+ M +E E + + E ++ D + + EL E N+++ + G
Sbjct: 161 QIMQ----QMKEELERAG--VMEEFQAEMDWMCEGGDDELEIEKPDNPNAWMRVNG--AI 212
Query: 175 GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
L+A A + R+ A+ ++ + ++ NR L + ++LP T +L
Sbjct: 213 RLSASARGRFAAVYALREERAKKENIAAFRLMTNRNLFRLVEELPETTDEL 263
>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 700
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 8 FVVDTLKLRV--QVGPYLREVFKDPTKKKVMHG-ADRDIVWLQRDFGIYLCNMFDTGQAS 64
+V+D L V +VG L +F DP KV H D+ L RDFGI++ N FDT +A+
Sbjct: 287 YVIDPLAPGVFEEVGG-LAPIFADPDIVKVGHSIGGLDVRSLHRDFGIFVINAFDTYEAA 345
Query: 65 RVLKLERNSLEYLLHHFCGV-------NANKEYQNADWRVRPLPDEMLRYAREDTHYL-- 115
+VL LE + L + H+ G+ + EYQ DWR RPL M++Y R D H+L
Sbjct: 346 KVLCLESHGLAAVCEHY-GMKYTDLYKSLKNEYQTCDWRARPLTGPMIQYGRFDVHFLIE 404
Query: 116 ---LYIYDIMKIKL 126
L I D+ K L
Sbjct: 405 LRMLMIRDLTKTYL 418
>gi|347755007|ref|YP_004862571.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
gi|347587525|gb|AEP12055.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
Length = 405
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 21/232 (9%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+ LR VD RV + P L + P +K++H +DIV L+R+ ++FDT
Sbjct: 43 LGLRDRCVAVD--PFRVNLTP-LAPLLTHPGIRKIVHAGGQDIVLLRRETDAIPVSVFDT 99
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L E L F V+ +K+ Q DW RPL E + YA D YL +Y
Sbjct: 100 QIAAAFLGYGEATGYAALAQRFAKVSLSKKQQFTDWTRRPLLPEQIEYALNDVRYLFPVY 159
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENS---YLHIYGLQGAGL 176
D + +L+ + +D L D C + + + YL I L +
Sbjct: 160 DGLLEQLA----QHGRTDWVL--------DACADAVAQAVRVRETGQEYLKIGKL--GSM 205
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ ++LAV+ L +WR+ AR+ + G +L + L +IA LP T LR++
Sbjct: 206 SRRELAVLRELYQWREATARSRNRPVGTILHDDVLRQIAYTLPRTETALRQM 257
>gi|338532921|ref|YP_004666255.1| putative ribonuclease D [Myxococcus fulvus HW-1]
gi|337259017|gb|AEI65177.1| putative ribonuclease D [Myxococcus fulvus HW-1]
Length = 378
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 19/269 (7%)
Query: 1 MSLRTED--FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
+ L T+D F++DTL+ V G L + DP + K H A D+ +L + G+ + +F
Sbjct: 38 LQLATDDEVFLLDTLQPGVVPG-MLAPLMADPARTKFFHAAQGDLQFLA-EVGVRVQGLF 95
Query: 59 DTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
DT +A+ +L + L + GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 96 DTHRAATLLGWPKVGLADIARERLGVELPKEHQQSDFSIRPLPPGMREYIANDVRYL--- 152
Query: 119 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
+L +++ L EV +C + + + + + L AGLN
Sbjct: 153 -----CELGRQVRDACREADILEEVLLDCARLCDEAAARPDVGAD---YKPKLPRAGLNP 204
Query: 179 QQL----AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234
QL A+ L R A ++ G +L N + +IA +LPT +L R+ + S
Sbjct: 205 VQLTLAHAIAQALHRKRLEWAEKENVPMGRMLSNMAIGDIAVKLPTNPKELARMAGVRGS 264
Query: 235 YIERYMGPVLSIIKNSMQNAANFEVIAQK 263
+I + +L++++ ++ + E+ ++
Sbjct: 265 FIRAHGEDLLAVVRELLEKSRRGELAPER 293
>gi|433647366|ref|YP_007292368.1| ribonuclease D [Mycobacterium smegmatis JS623]
gi|433297143|gb|AGB22963.1| ribonuclease D [Mycobacterium smegmatis JS623]
Length = 422
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + GI ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGIRPPKLYDTELAGRLAGYDRVNLAAMVQRLLGLQLMKGH 166
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLPDE L YA D LL + D + L+ K T+ + ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLLDLRDAIADVLAEQGK---------TDWAAQEFEF 217
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R YE + + G+ N + LA V L + RD IAR D + G +LP+
Sbjct: 218 VRT-YEATPTRRDRWRRTSGIHKVR-NPRALAAVRELWQTRDHIARRRDIAPGRILPDAA 275
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I A P + KL L
Sbjct: 276 IINAATVNPDSIEKLTEL 293
>gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
Length = 499
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 137 VLHAASQDLPCLA-ELGLRPKTLFDTELAGRLLGYERVGLGAMVERVLGFGLEKGHSAAD 195
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L + K + ++ +D
Sbjct: 196 WSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMA---------FARQEFDAIAAA 246
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E +E + G+ A + +QLA V + + RD +AR D + G VLP+ +++
Sbjct: 247 PPREPRAE-PWRRTSGIHRA-RSRRQLAAVRSMWQARDRVARTRDIAPGRVLPDIAIMDA 304
Query: 215 AKQLPTTAAKLRRL 228
+ P AA L RL
Sbjct: 305 VLKAPEDAAALTRL 318
>gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 431
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L ++R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 108 DLGLKPQRLFDTEIAARLLGMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPK---ESENSDTPLTE--VYKRSYDVCRQLYEKELLSEN 163
D L+ + IM+ +L K E D L E ++ + V
Sbjct: 168 ALDVELLIELETIMRAELRRQGKIEWAEEEFDYALREGTAPRKEHPV------------- 214
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+L I + + Q LAV L RD +AR D S +L +RT+IE+A++ P AA
Sbjct: 215 PWLRISHITEIMKDRQALAVAKALWTKRDELARQYDISPTLLLADRTIIEVAERKPHNAA 274
Query: 224 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKL 264
+ R + + ERY P+ IK SM ++I Q L
Sbjct: 275 QFRAVRSINERVRIQADAEQEKMFERY-APIQRKIKPSMWK----KIIQQAL 321
>gi|387824213|ref|YP_005823684.1| Ribonuclease D [Francisella cf. novicida 3523]
gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
Length = 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 18/216 (8%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E F++DTLK + L+++F++ +K++H A DI ++R F + N+FDT A+
Sbjct: 48 EIFLIDTLK-DLDFSK-LKDIFENKDIQKIIHSATNDIPIIKRFFNCEVNNIFDTQLAAA 105
Query: 66 VLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
L + ++SL+ LL + KE Q +DWR RPL + L YA +D YL+ + + ++
Sbjct: 106 FLGFQTQSSLKTLLKEILDIEMEKESQFSDWRNRPLTQKQLNYAIKDVEYLIQLKEYLQQ 165
Query: 125 KLSSMPKESEN-SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+L + E + + L E+ K ++ EN + I +Q Q+ A+
Sbjct: 166 QL--IKSEYQGFFEQELIEIQKTQFNSI----------ENIHTKIGNIQKFDEKTQKNAI 213
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ + +WR++IA+ + ++ N+ L +A + P
Sbjct: 214 L--IAQWREMIAQEKNIPVRFIFNNKVLYALAHKNP 247
>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
Length = 373
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D LK+ P L +FKD K++H A D+ QR G+ +FDT +A+ ++
Sbjct: 58 WMIDPLKIE-DPAP-LANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALV 115
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
L+ L Y ++ C + K +DW RPL + YA +D +LL Y I+ +
Sbjct: 116 GLD-FGLGYRSMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAER 174
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
SM + V + + CR L + S Y I G L ++LA +
Sbjct: 175 CHSMQRYD--------WVLEDGEEACRGL--ASMSSAQYYRRIKG--AWKLEPRELAALI 222
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 245
+ EWR+ AR D+ +++ ++ +++A+ P LR ++ S + RY +L
Sbjct: 223 AISEWRERTAREKDKPRSWIIDDKACLQLAQVGPANMNDLRSKIEMHGSSMRRYGETLLD 282
Query: 246 II 247
++
Sbjct: 283 LV 284
>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
Length = 380
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 40/215 (18%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L+++F+ K++H A D+ +R G+ M DT +A+ +L L L Y L+H
Sbjct: 72 LQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLG-FGLSYRDLVHD 130
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK------LSSMPKESE 134
++ K+ +DW VRPL D YA +D +L + I++ + LS + +ES
Sbjct: 131 LLSIDVAKDETQSDWLVRPLTDAQCHYAMQDVTFLAQCWPILEARAEASGYLSWILEESA 190
Query: 135 NSDT----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEW 190
T PL + +K ++ LN+QQLAV+ L +W
Sbjct: 191 AMVTGGRGPLAK-FKSAWK--------------------------LNSQQLAVLLDLIDW 223
Query: 191 RDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
R+ AR + ++L ++ ++++AK++PT+ +L
Sbjct: 224 RESKARDRNRPRNWILHDKVILDLAKRIPTSMPQL 258
>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
Length = 339
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 22 YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHF 81
+LR F DP KV H D DI L+RD+G N+FDT +A+ +L + +L ++ +
Sbjct: 118 FLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHMLGSQYLALSSIIEQY 177
Query: 82 CGVNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 139
GV K+ Q + W RPL + LRYA +DT YL +Y + KL S+ E +
Sbjct: 178 LGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKL-SLKGMQERARKV 236
Query: 140 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 199
V S + ++ L + I G A L A + L WR AR +
Sbjct: 237 FENVAAVS-------WREKTLDLLGHRRISGY--ASLTADSKGRLKKLYRWRFHKARQTN 287
Query: 200 ESTGYVLPNRTLIEIAKQLPTTAAKLR 226
+ +LP+ L+ +++ + +LR
Sbjct: 288 RAMFLILPDSALLSLSEGNWQSVEELR 314
>gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
Adolescentis
Length = 440
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 42 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 93 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 152
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 148
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 210
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 211 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 261
Query: 209 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 251
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 262 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 319
Query: 252 QNA 254
Q+A
Sbjct: 320 QDA 322
>gi|381162216|ref|ZP_09871446.1| ribonuclease D [Saccharomonospora azurea NA-128]
gi|379254121|gb|EHY88047.1| ribonuclease D [Saccharomonospora azurea NA-128]
Length = 413
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR + P L EV D + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 79 FLIDPIPLRDHLAP-LAEVMND--VEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 134
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R +L L+ G K + ADW RPLP + L YA D L+ + + ++ +L+
Sbjct: 135 GHQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLREKLEAELA 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGAGLNAQQL 181
+ K D RQ +E +E + G+ A+ L
Sbjct: 195 ASGK----------------LDWARQEFEAVRTAEPPRPRSEPWRRTSGIHKIR-TARGL 237
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
A V L E RD +AR D + G +LP+ +I P T +L++L
Sbjct: 238 AAVRALWEARDELARKRDRAPGRILPDSAIINAVLAAPRTVTELQQL 284
>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
Length = 408
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 34/202 (16%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G + +FDT A R+L ER L ++ + G+ K + AD
Sbjct: 93 VLHAASQDLPCLA-ELGFHPRELFDTELAGRLLGYERVGLGMMVENVLGLKLEKGHSAAD 151
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESE-----------NSDTPLTEV 143
W RPLP++ LRYA D L+ + D++ +L + K + S P ++
Sbjct: 152 WSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGKLAWAQEEFASVLAYKSPAPRSDP 211
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++R+ + + + L+G LAVV L RD AR D + G
Sbjct: 212 WRRTSGIHK---------------VRSLRG-------LAVVRELWTLRDEFARESDIAPG 249
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
VLP+ ++ A +LP T L
Sbjct: 250 RVLPDSAIVTAALELPRTTKAL 271
>gi|441517701|ref|ZP_20999435.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441455575|dbj|GAC57396.1| putative ribonuclease D [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 396
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 37/232 (15%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + E + P + ++H AD+D+ L + G +FDT A R+L
Sbjct: 60 FLIDPIANPEALDPVI-EALRGP--EWILHAADQDLPCLT-ELGFECTTLFDTELAGRLL 115
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L + +L ++ F + K + ADW RPLPD+ L YA D L+ + D M L
Sbjct: 116 NLPKVNLAAMVAEFLQLGLAKGHGAADWSHRPLPDDWLNYAALDVEVLVELRDAMHSALD 175
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKEL-----------LSENSYLHIYGLQGAGL 176
K ++ RQ + EL S +H
Sbjct: 176 EAGK----------------FEWARQEFAYELTKPPAPPRPDRWRRTSNIHTLR------ 213
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
N +QLA+V L R+ IA D + G VLP+ +I A PTT ++L L
Sbjct: 214 NQRQLAIVRELWTAREEIAARRDVAPGRVLPDSAIITAAVAAPTTESELTSL 265
>gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
L2-32]
gi|154082849|gb|EDN81894.1| 3'-5' exonuclease [Bifidobacterium adolescentis L2-32]
Length = 431
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 42 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 91 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 150
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 148
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 151 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 208
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 209 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 259
Query: 209 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 251
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 260 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 317
Query: 252 QNA 254
Q+A
Sbjct: 318 QDA 320
>gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
15703]
gi|118765591|dbj|BAF39770.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
15703]
Length = 431
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 43/243 (17%)
Query: 42 DIVWLQRD----------FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
D VW+ D G+ +FDT A+R+L L+R L + HF G+ KE+
Sbjct: 91 DAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHS 150
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL---SSMPKESENSDTPLTEVYKRSY 148
ADW RPLP + YA D L+ + M+ +L M E D L E
Sbjct: 151 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGP-- 208
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
KE L ++H+ + + Q LA+V L RD +AR D + +L +
Sbjct: 209 -------RKEHLI--PWMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSD 259
Query: 209 RTLIEIAKQLPTTAAKLRRL-----------------LKSKHSYIERYMGPVLSIIKNSM 251
++IE+AK+ P AA+ R + + +++ I+R + P S+ KN +
Sbjct: 260 SSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKP--SMWKNII 317
Query: 252 QNA 254
Q+A
Sbjct: 318 QDA 320
>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
Length = 383
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 24/237 (10%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
+ +V ++P KV+H D+ Q FG+ ++FDT Q + +S+ Y LL
Sbjct: 81 MADVLQNPAIVKVVHACSEDLEVFQYAFGVLPESLFDT-QVAAGFAGYGSSIGYANLLRE 139
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 140
++ K+ +DW RPL D LRYA D YLL IY + KL + L
Sbjct: 140 IKRIDIPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQR--------L 191
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ---GAGLNAQQLAVVAGLCEWRDVIARA 197
V C+++ EK L S+ + Y + L+A+QL V+A +C WR+ A+
Sbjct: 192 LWVEAD----CQRMIEK--LRNTSHENTYYTRVKSAWKLDAEQLTVLAAICRWREGQAKK 245
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYI----ERYMGPVLSIIKNS 250
+D +L + +L +IA +LP +L+R+ + ++ + ++G V+ + ++
Sbjct: 246 NDVPRSRILKDVSLFDIALKLPMDMQQLKRIQEIPSRFLGELGKEFLGVVIETLNDT 302
>gi|409910998|ref|YP_006889463.1| ribonuclease D [Geobacter sulfurreducens KN400]
gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
Length = 381
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 11/197 (5%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L +F + +KV HGAD DI L RDFG+ + N+FDT A ++L L L
Sbjct: 71 LAPLFANAAIRKVFHGADYDIRSLHRDFGMEVNNLFDTMIACQLLGEREFGLAAQLRKRF 130
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
GV +K+YQ ADW RPL M+ YA +DT L+ + + L + + +
Sbjct: 131 GVELDKQYQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEE----- 185
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
++ ++ E E +L G + ++ + LAV+ L +RD AR D
Sbjct: 186 ----ECELLSRVRVAERGDEPFFLRFKG--ASRMDGRTLAVLEELLAFRDGRARQVDVPP 239
Query: 203 GYVLPNRTLIEIAKQLP 219
VL T+ E+A++ P
Sbjct: 240 FKVLGTDTVRELAERRP 256
>gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
Length = 459
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT SR+ L R L + HF GV KE+ D
Sbjct: 131 VLHAATQDLPCL-KALGLRPRKLFDTELGSRLAGLPRVGLAAVTEHFVGVTLAKEHSAVD 189
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D L+ + D + L E++ + ++ D
Sbjct: 190 WSTRPLPHDWLVYAALDVERLVEVRDALAADL-----EAQGKAEWARQEFEALLDFEGPT 244
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+KE S LH A + +QLA V L + R+ IA+ D + G VLP+ +I++
Sbjct: 245 PKKEPWRRTSGLH------ALRDLRQLARVRALWQTREDIAQRRDTTPGRVLPDALIIDL 298
Query: 215 AKQLP 219
A++ P
Sbjct: 299 ARRNP 303
>gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
Length = 386
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 8 FVVDTLKL-------RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
F+VDTL L R + L E P+ + +HG + D+ L+RDFGI L +FDT
Sbjct: 57 FLVDTLALAGDSGEPRAEALAALAEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDT 116
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+ L R ++ C K ++ DW RP+ + LRYA +D +L +
Sbjct: 117 QQAASFLGWSRTGYAAVVEAVCEQKLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGR 176
Query: 121 IMKIKLSSMPKESE----NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGA-G 175
++ ++ + + E N+ ++ ++D R ++ L+GA
Sbjct: 177 ELEARIGAADLDEELAIANASVAAAPAHRSAFDPSR---------------MWKLKGARD 221
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 235
L A++L V+A + WR+ R D G ++ N L+ +A++ P AA L+R ++ + +
Sbjct: 222 LPAERLPVLAAIYRWREDKGRELDHPPGRLIANEPLVHLARRAPRDAAALKR-MRLRRGF 280
Query: 236 IERYMGPVLSIIKNSMQN 253
I+ + +L+ I ++
Sbjct: 281 IQSHGEGLLAAIAAGLEG 298
>gi|54025710|ref|YP_119952.1| RNase D [Nocardia farcinica IFM 10152]
gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152]
Length = 424
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 27/227 (11%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F+VD + + +GP L E D + V+H AD+D+ L + G+ +FDT R+
Sbjct: 80 FLVDPIPVADALGP-LAEAIND--LEWVLHSADQDLPGLA-ELGLRPARLFDTELGGRLA 135
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER L ++ G K + ADW RPLP E L YA D LL + D + +L
Sbjct: 136 GFERVGLAAMVERLLGRTLRKGHGAADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQ 195
Query: 128 SMPK------ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
K E E+ T TE D R+ S +H +QL
Sbjct: 196 RQGKSDWAAQEFEHVRT--TEPPAPKADRWRR---------TSGIHTL------RKPRQL 238
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
A+V L RD +AR+ D + +LP+ ++ A P + A+LR L
Sbjct: 239 AIVRELWTTRDTLARSRDIAPARILPDGAIVAAAAADPRSIAQLRAL 285
>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|399987123|ref|YP_006567472.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
gi|399231684|gb|AFP39177.1| Putative ribonuclease D [Mycobacterium smegmatis str. MC2 155]
Length = 415
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 107 VLHAADQDLPCLA-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGHGAAD 165
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPDE L YA D LL + + L K TE + ++ R
Sbjct: 166 WSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGK---------TEWAAQEFEHLRT- 215
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
Y + + + G+ N + LA V L RD IAR+ D + G +LP+ +I
Sbjct: 216 YVAQPTRRDRWRRTSGIHKV-RNPRALAAVRELWTTRDNIARSRDIAPGRILPDAAIINA 274
Query: 215 AKQLPTTAAKLRRL 228
A P T A+L L
Sbjct: 275 ATVDPKTTAELTAL 288
>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 8 FVVDTLKLRV---QVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
+++D +++ V ++ +++F+D KV + D++WL+RDF I + N FD + +
Sbjct: 88 YIIDVIEIGVDNQKLINVFKQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQNFFDIKEVA 147
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEY----QNADWRVRPLPDEMLRYAREDTHYLLYI 118
KL + SL +L +C +K Y Q +DW RPL E L YA D +YL Y+
Sbjct: 148 DECKLSKISLIFLWKQYCDHQVSKSYKTNMQTSDWAERPLTQEQLIYAAYDCYYLPYL 205
>gi|441207706|ref|ZP_20973646.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440627889|gb|ELQ89694.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 405
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 97 VLHAADQDLPCLA-EIGLRPGKLYDTELAGRLAGFERVNLAAMVQRLLGLQLMKGHGAAD 155
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPDE L YA D LL + + L K TE + ++ R
Sbjct: 156 WSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGK---------TEWAAQEFEHLRT- 205
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
Y + + + G+ N + LA V L RD IAR+ D + G +LP+ +I
Sbjct: 206 YVAQPTRRDRWRRTSGIHKVR-NPRALAAVRELWTTRDNIARSRDIAPGRILPDAAIINA 264
Query: 215 AKQLPTTAAKLRRL 228
A P T A+L L
Sbjct: 265 ATVDPKTTAELTAL 278
>gi|146173426|ref|XP_001018834.2| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|146144882|gb|EAR98589.2| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 634
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+D+++D L LR ++ L+E+F D K+ I WL RDFGI N+ ++ S
Sbjct: 140 QDYIIDCLSLRNEIHR-LKEIFLDKQIVKITLDLQEKINWLYRDFGI--LNIVNSIDLSL 196
Query: 66 VLKLERNSLEYLLHHFCGVNAN----KEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 121
LK E N L ++ + CG N K QN D+R RPL + Y R +++ L I I
Sbjct: 197 YLK-ELN-LPSIISYLCGTLLNYPFQKILQNFDYRKRPLSLNEINYLRAFSYFPLRILSI 254
Query: 122 MKIKLSSMPKESENSDTPLTEVYKRS-YDVCRQLYEKE-LLSEN---SYLHIYGLQGAGL 176
+ + S+ K + L E++ +S C L + E LL EN + ++ +
Sbjct: 255 LTNNILSIEK------SKLEELFNKSQLASCLSLKQLENLLQENLIEKHFEMFCI-DRNY 307
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
N QQ + + +WR A+ +DES Y+ P + + PT++ ++
Sbjct: 308 NEQQQYFLRKILKWRIQRAKLEDESVEYIFPACIIEKFISVYPTSSQQV 356
>gi|342179232|sp|A6V8R6.2|RND_PSEA7 RecName: Full=Ribonuclease D; Short=RNase D
Length = 376
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
++++D L +R GP+ E+ +DP KV+H D+ R G +FDT A+
Sbjct: 57 EWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAY 114
Query: 67 LKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 115 LGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDA 173
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 184
+LS E L + + ++CR+ +E E G L QQLAV+
Sbjct: 174 RLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAVL 221
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LC WR+ AR + +VL RTL +A+ LP
Sbjct: 222 RELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
Length = 393
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
++++D L +R GP+ E+ +DP KV+H D+ R G +FDT A+
Sbjct: 74 EWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAY 131
Query: 67 LKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 132 LGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDA 190
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 184
+LS E L + + ++CR+ +E E G L QQLAV+
Sbjct: 191 RLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAVL 238
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LC WR+ AR + +VL RTL +A+ LP
Sbjct: 239 RELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3]
gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3]
Length = 427
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 98 VLHAASQDLPCLS-ELGLRPSLLFDTELAGRLLGYERVGLGIMVERVLGYGLEKGHSAAD 156
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 157 WSTRPLPEPWLRYAALDVELLVELRDALEAELIEQNK---------IEFARQEFAAIVAA 207
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E +E + G+ A + +QLA V + RD +AR D + G VLP+ +++
Sbjct: 208 PPREPRAE-PWRRTSGIHRAR-SRRQLAAVRAMWTARDRLARTRDVAPGRVLPDSAIMDA 265
Query: 215 AKQLPTTAAKLRRL 228
PT AA L RL
Sbjct: 266 VLNAPTDAAALVRL 279
>gi|377561634|ref|ZP_09791077.1| ribonuclease D [Gordonia otitidis NBRC 100426]
gi|377521196|dbj|GAB36242.1| ribonuclease D [Gordonia otitidis NBRC 100426]
Length = 436
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + E P + V+H AD+D+ L R+ G +FDT A R+L
Sbjct: 90 FLLDPISEPDALAPVI-EALDGP--EWVLHAADQDLPCL-RELGFRCETVFDTELAGRLL 145
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ + +L ++ F G+ K + ADW RPLPD+ L YA D L+ + D ++ L
Sbjct: 146 GVPKVNLAAMVSTFLGLGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVQQALL 205
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K D E ++ D + + +H + + LA V L
Sbjct: 206 EAGK-----DEWAREEFRYVLDRPAPAPRTDRWRRTANVHTVK------SPRSLAAVREL 254
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R+ +A+ D + G VLP+ ++ A +PT+ A L RL
Sbjct: 255 WTAREELAQRRDVAPGRVLPDSAIVTAANAMPTSIADLTRL 295
>gi|379709831|ref|YP_005265036.1| putative RNase D [Nocardia cyriacigeorgica GUH-2]
gi|374847330|emb|CCF64400.1| putative RNase D [Nocardia cyriacigeorgica GUH-2]
Length = 446
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 19/240 (7%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + + P L E D + V+H AD+D+ L + G+ +FDT R+
Sbjct: 95 FLIDPIPVADDLTP-LAEAIND--LEWVLHSADQDLPGLAQ-LGLRPARLFDTELGGRLA 150
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R L ++ G K + ADW RPLP+ L YA D LL + + + I L
Sbjct: 151 GFDRVGLAAMVERLLGRALRKGHGAADWSTRPLPEAWLNYAALDVELLLELRESVAIALH 210
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K TE + ++ R L E + + G+ A+QLA V L
Sbjct: 211 QQGK---------TEWAAQEFEHVR-LTEPAPPKADRWRRTSGIHTL-RRARQLATVREL 259
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 243
RD +AR D + +LP+ +I A P T A+LR L + Y ++G V
Sbjct: 260 WTTRDELARQRDIAPSRILPDSAIIAAANAEPRTIAQLRELPVFGGPRQRRYSREWLGAV 319
>gi|336177812|ref|YP_004583187.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
gi|334858792|gb|AEH09266.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
Length = 474
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ +FDT A R+L ER L ++ G K + AD
Sbjct: 109 VLHAANQDLPCLA-EVGLRPSRLFDTELAGRLLGYERVGLGIMVEKVLGFTLEKGHSAAD 167
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L + K + + +
Sbjct: 168 WSTRPLPEPWLRYAALDVELLVELRDALETELETQGKLA---------FAREEFAAIAAA 218
Query: 155 YEKE----LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
+E L S +H N +QLA V + RD IAR D + G VLP+
Sbjct: 219 PPREPRPGLWRRTSGIHRV------RNRRQLAAVRSMWTTRDRIARERDIAPGRVLPDSA 272
Query: 211 LIEIAKQLPTTAAKLRRL 228
+IE P L RL
Sbjct: 273 IIEAVLAAPADIEALTRL 290
>gi|384566551|ref|ZP_10013655.1| ribonuclease D [Saccharomonospora glauca K62]
gi|384522405|gb|EIE99600.1| ribonuclease D [Saccharomonospora glauca K62]
Length = 413
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 23/239 (9%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR + P L EV KD + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 79 FLIDPIALRNDLAP-LAEVMKD--VEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 134
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R L L+ G K + ADW RPLP + L YA D L+ + D ++ +L+
Sbjct: 135 GHQRVGLGTLVEELLGYRLEKGHSAADWSRRPLPIDWLNYAALDVELLVPLRDKLEAELA 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH--IYGLQGAGLNAQQLAVVA 185
+ K E + ++ R E I+ ++ + LA V
Sbjct: 195 AAGK---------LEWALQEFEAVRTAEPPAPRPEPWRRTSGIHKIR----TPRGLAAVR 241
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYM 240
L E RD +AR D + G +LP+ +I A P + A+L++L + + Y R++
Sbjct: 242 ALWEARDELARKRDRAPGRILPDSAIINAALADPRSPAELQKLPVFGGRVQRRYTTRWL 300
>gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
Length = 417
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 107 VLHAASQDLPGLA-EQGMRPSRVFDTELAARLLGMERVGLAAVVADTLGLGLAKEHSAVD 165
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E LRYA D L+ + ++ +L+ K E ++ ++ R
Sbjct: 166 WSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGK---------AEWARQEFEAVRT- 215
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + GL +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 216 APPPAPRAEPWRRVSGLHNV-RDARRLAVVRELYATRDRNARERDISPGRVLPDAAIVAA 274
Query: 215 AKQLPTTAAKLRRL 228
A+ LP T +L L
Sbjct: 275 AQALPRTVGQLTAL 288
>gi|147772956|emb|CAN67183.1| hypothetical protein VITISV_007528 [Vitis vinifera]
Length = 1587
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
VYKRS+D+C QLYEKELL+++SYL+ YGLQGA NAQQLA+VA
Sbjct: 1504 VYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLAIVA 1546
>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
Length = 549
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 108/266 (40%), Gaps = 52/266 (19%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADR-DIVWLQRDFGIYLCNMFDTGQASR 65
D+VVD L LR ++ L F DP +KV H DI LQRDFGI++ N+FDT +A+R
Sbjct: 256 DYVVDALALRFELRA-LAPAFADPNIRKVFHACQGVDIPRLQRDFGIFVVNVFDTQEAAR 314
Query: 66 VLKLERNSLEYL--LHHFCGV----------NANKEYQNADWRVRPLPDEMLRYAREDTH 113
+ L L+ GV + + YQN DWR RPL L YA D
Sbjct: 315 CAARVLGAPLGLVALYASAGVISTARRDELESLKRAYQNCDWRSRPLSPAQLEYAVCDAR 374
Query: 114 YLLYIYDIMKIKLSSMPKESENSDTP----------------LTEVYKRSYDVCRQLYEK 157
+L+ + + +L + P D+ Y K
Sbjct: 375 HLVDLEAYLNRELRHFDPLRDYGLPPGGAARDAPRPPPPPGPREAAGDEEADMVASAYCK 434
Query: 158 ELLSENSYLHIY------GLQGAGLNAQQLAVVA--------GLCEWRDVIARADDESTG 203
S+ + L ++ LQ A +Q A +A L WRD AR DE
Sbjct: 435 ---SQRATLCLWRAPRSPRLQAA--RDKQFAALARDAAPRFSALVAWRDAEARRLDEGPH 489
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRLL 229
V P+ L AK+ PTT LR LL
Sbjct: 490 AVCPSAALAAFAKRWPTT---LRGLL 512
>gi|418463537|ref|ZP_13034542.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
gi|359732844|gb|EHK81852.1| ribonuclease D [Saccharomonospora azurea SZMC 14600]
Length = 395
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR + P L EV D + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 61 FLIDPIPLRDHLAP-LAEVMND--VEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 116
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R +L L+ G K + ADW RPLP + L YA D L+ + + ++ +L+
Sbjct: 117 GHQRVALGTLVEELLGYRLEKGHSAADWSRRPLPVDWLNYAALDVELLVPLREKLEAELA 176
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSE------NSYLHIYGLQGAGLNAQQL 181
+ K D RQ +E +E + G+ A+ L
Sbjct: 177 ASGK----------------LDWARQEFEAVRTAEPPRPRSEPWRRTSGIHKIR-TARGL 219
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
A V L E RD +AR D + G +LP+ +I P T +L++L
Sbjct: 220 AAVRALWEARDELARKRDRAPGRILPDSAIINAVLADPRTVTELQQL 266
>gi|403512793|ref|YP_006644431.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802886|gb|AFR10296.1| 3'-5' exonuclease family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 444
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 12/220 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + + +FDT A R+L +R L +++ + KE+ D
Sbjct: 132 VLHAAHQDLPCLA-EVNLRPGRLFDTELAGRLLGYQRVGLGFMVERLLDIRLAKEHSAVD 190
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP++ LRYA D L+ + D ++ +L K E + +
Sbjct: 191 WSQRPLPEDWLRYAALDVEILIELRDRLEAELEEAGK---------LEWAREEFAAILAA 241
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
KE + + + G+ + LA V L RD IAR D S G VLP+ ++E
Sbjct: 242 PPKEPRT-DPWRRTSGIHKV-RKQRSLAAVRELWYERDRIARERDTSPGRVLPDAAIVEA 299
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNA 254
A +P A +L R+ + RY L I + A
Sbjct: 300 ATTMPRDANELNRIRQFGIKLARRYPATWLKAIDRARDMA 339
>gi|354617195|ref|ZP_09034673.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
gi|353218454|gb|EHB83215.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
Length = 282
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 37/233 (15%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
T +VD + L ++ P L EV + V+H A +D+ L + G++ +FDT A
Sbjct: 76 TGTLLVDPIPLDGELAP-LAEVLG--AHEWVLHAASQDLPCLA-ELGLHPPALFDTELAG 131
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
R+ ER +L L+ G K + ADW RPLP E L YA D L+ + ++
Sbjct: 132 RLAGYERVALGTLVETLLGYRLEKGHSAADWSRRPLPAEWLNYAALDVELLVPLRGKLEA 191
Query: 125 KLSSMPK------ESENSDT-----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 173
+L+ K E E + T P E ++R+ S +H
Sbjct: 192 ELAGQGKLDWAHQEFEAARTAGPPAPRAEPWRRT----------------SGIHKIK--- 232
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
A+ LA V L E RD +AR D + G VLP+ ++ P T A+LR
Sbjct: 233 ---TARGLAAVRALWEERDALARGRDRAPGRVLPDSAIVNAVLADPRTDAELR 282
>gi|395215204|ref|ZP_10400856.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
gi|394455924|gb|EJF10318.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
Length = 395
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 16/208 (7%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P+ ++ +DPT K++H ++ DI+ L + G + + DT A+++L
Sbjct: 65 FIIDPFYID-DLTPFF-QLMEDPTITKIIHHSNNDILLLDK-MGCSVKGIVDTDVAAKIL 121
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER+SL +L +K Q+++W RPL ++ LRYA D YL KIK +
Sbjct: 122 NYERSSLATVLKEEFDKEIDKSQQSSNWNKRPLTEDQLRYAAIDVIYL------HKIK-A 174
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ +E E D ++ + QL E SEN +L + LN Q ++ GL
Sbjct: 175 KLLQEIEKLDR--MHWFEEENHLLEQLKYTE--SENPHLRLK--HSYRLNYYQQYLLKGL 228
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIA 215
+R+ +AR ++ +V+PN L+E+A
Sbjct: 229 YAFRENMARQFNKPAHFVIPNDALVELA 256
>gi|221059461|ref|XP_002260376.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
gi|193810449|emb|CAQ41643.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
Length = 1124
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL + ++ L ++ DP K+++ + I +Q+DF IY NM D S
Sbjct: 530 DYIIDTLYMFEKIHE-LNDITTDPNILKILYKSKNIIPVMQKDFSIYFVNMIDISVCSDF 588
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L + RNSL YL+H++ VN N + RPL +++ R HYL Y+++ +K L
Sbjct: 589 LSV-RNSLHYLVHNYFHVNVNSAGNGLNALTRPLSPDLVSNLRMPFHYLYYLFEYVKTDL 647
>gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 421
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 46/223 (20%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + + ++FDT A R+L +R L +++ + KE+ D
Sbjct: 109 VLHAAHQDLPCLS-EINLRPRSLFDTELAGRLLGYQRVGLGFMVERLLHLRLAKEHSAVD 167
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIK-----------------LSSMPKESENSD 137
W RPLP++ LRYA D L+ + D ++++ LS+ PKE
Sbjct: 168 WSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWAREEFAAVLSAPPKE----- 222
Query: 138 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
P T+ ++R+ + R N + LA V L RD IA+
Sbjct: 223 -PRTDPWRRTSGIHRV----------------------RNQRALAAVRELWYERDRIAQE 259
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
D S G VLP+ ++E A +P T +L ++ + RY+
Sbjct: 260 RDISPGRVLPDAAIVEAATAMPRTTTELAKIRQFGIKLARRYL 302
>gi|453070952|ref|ZP_21974179.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
gi|452760035|gb|EME18378.1| ribonuclease D [Rhodococcus qingshengii BKS 20-40]
Length = 429
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 102 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 160
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 161 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 211
Query: 155 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 212 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 267
Query: 213 EIAKQLPTTAAKLRRL 228
+ A + P + LR L
Sbjct: 268 DAALKDPRSLDALRSL 283
>gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4]
Length = 429
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 102 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 160
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 161 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 211
Query: 155 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 212 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 267
Query: 213 EIAKQLPTTAAKLRRL 228
+ A + P + LR L
Sbjct: 268 DAALKDPQSLDALRSL 283
>gi|429758726|ref|ZP_19291239.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172940|gb|EKY14477.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 181 str. F0379]
Length = 412
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 20/254 (7%)
Query: 1 MSLRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+ LR ED F++DT L P+L + ++H A +D+ L R+ G+ + +
Sbjct: 70 LQLRREDVGSFLIDTAAL-----PHLECLQASMNSTWILHDASQDLPNL-RELGLEIPAL 123
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT ASR+L + L + G+ K++Q ++W VRPLP + LRYA D L
Sbjct: 124 FDTQVASRLLGMTHFGLSAVCEQVLGLTLVKDHQASNWSVRPLPKDWLRYAVLDVELLTA 183
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLN 177
+ D ++ +L + + S + + + L +K + + I G+ G +
Sbjct: 184 LKDSLEERLDDLGRTSWAQ-----QEFSHIAEAAPPLPKK-----DRWRSISGI-GKLTS 232
Query: 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 237
+ LA+ L RD IAR D + G ++ N +I A++ P T L + + +
Sbjct: 233 KRALAIARELWIERDAIAREIDLAPGRLVRNSGIIHAAQRPPRTRHNLLSIAEFRSPQAR 292
Query: 238 RYMGPVLSIIKNSM 251
RY L + ++
Sbjct: 293 RYAQHFLDAVTRAL 306
>gi|444432003|ref|ZP_21227163.1| putative ribonuclease [Gordonia soli NBRC 108243]
gi|443887177|dbj|GAC68884.1| putative ribonuclease [Gordonia soli NBRC 108243]
Length = 431
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 15/243 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + V + P + +V P + V+H AD+D+ L R+ ++DT A R+L
Sbjct: 92 FLLDPIDEPVALRPVI-DVLDGP--EWVLHAADQDLPCL-RELDFVCAEVYDTELAGRLL 147
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L + +L ++ F G+ K + ADW RPLPD+ L YA D L+ + D + L
Sbjct: 148 GLPKVNLAAMVAEFLGLGLAKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAIDAALV 207
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ + ++ D + + S +H N + LA V L
Sbjct: 208 DAGKDDWAR-----QEFRHILDRPPTPPRTDRWRKTSNIHTVK------NVRALAGVREL 256
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
R+ IA D + G VLP+ ++ A P+T +L RL R G L+ +
Sbjct: 257 WTAREEIAARRDIAPGRVLPDSAMVTAATAAPSTIDELTRLPVFGGPRQRRLAGTWLTAL 316
Query: 248 KNS 250
+ +
Sbjct: 317 QRA 319
>gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
Length = 424
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGH 166
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLPDE L YA D L + + + L K E ++ ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGK---------AEWARQEFEY 217
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R +E + + G+ + + LA V L RD IAR D + G +LP+
Sbjct: 218 LRT-FEGSPTRRDRWRRTSGIHKV-RDPRALAAVRELWTTRDQIARRRDIAPGRILPDSA 275
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I A P T KL L
Sbjct: 276 IISAATANPDTIEKLTAL 293
>gi|383831224|ref|ZP_09986313.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
gi|383463877|gb|EID55967.1| ribonuclease D [Saccharomonospora xinjiangensis XJ-54]
Length = 413
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR Q+ P L EV + + V+H A +D+ L + G+ ++FDT A R+
Sbjct: 79 FLIDPIPLRDQLAP-LAEVMN--SVEWVLHAASQDLPCLA-ELGLRPPSLFDTELAGRLA 134
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R +L L+ G K + ADW RPLP E L YA D L+ + ++ +L+
Sbjct: 135 GYQRVALGTLVESLLGYRLEKGHSAADWSRRPLPVEWLNYAALDVELLVPLRAKLEAELA 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLY----EKELLSENSYLHIYGLQGAGLNAQQLAV 183
+ K L Y+ ++ R E S +H A+ LA
Sbjct: 195 ASGK--------LDWAYQ-EFEAVRTAEPPGPRAEPWRRTSGIHKI------RTARGLAA 239
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
V L E RD +AR D + G +LP+ ++ P T A+L +L
Sbjct: 240 VRALWEERDELARRRDRAPGRILPDSAIVNAVLADPRTPAELSKL 284
>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
Length = 431
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT A R+ ER L ++ V K + AD
Sbjct: 104 VLHSADQDLPGLA-ELGLTPAELFDTELAGRLAGFERVGLAAIVERTLRVELRKGHGAAD 162
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D LL + D M+ +L S K E K ++ R
Sbjct: 163 WSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGK---------LEWAKEEFEYIRLA 213
Query: 155 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + HI L+ +QLA V L + R+ +AR D S VLP+ +I
Sbjct: 214 GPPKPKPDRWRRTSHITSLK----TTRQLAAVRALWQAREDLARKRDVSPSRVLPDSAII 269
Query: 213 EIAKQLPTTAAKLRRL 228
+ A + P + LR L
Sbjct: 270 DAALKDPRSLDALRSL 285
>gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium gilvum Spyr1]
gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium gilvum Spyr1]
Length = 424
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ +R +L ++ G+ K +
Sbjct: 108 TDEWVLHAADQDLPCLA-EIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGH 166
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLPDE L YA D L + + + L K E ++ ++
Sbjct: 167 GAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGK---------AEWARQEFEY 217
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R +E + + G+ + + LA V L RD IAR D + G +LP+
Sbjct: 218 LRT-FEGSPTRRDRWRRTSGIHKVR-DPRALAAVRELWTTRDQIARRRDIAPGRILPDSA 275
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I A P T KL L
Sbjct: 276 IISAATANPDTIEKLTAL 293
>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
Length = 411
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 32 KKKVMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
+K V+H A D+ WL G+Y ++FDT A R+L ++ +L + F G+ +K
Sbjct: 87 EKWVVHAAVTDLTSLAWL----GLYPGSLFDTEVAGRLLGIQNPNLASVTEEFLGIELDK 142
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 148
Y DW PL L YA D LL + D M +L K +E + + K+
Sbjct: 143 GYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELEQEDK-TEWAQEEFAVIVKQFA 201
Query: 149 DVC----RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
++ R YE S IY Q LAV L + R+ A D + G
Sbjct: 202 NISAPAPRHWYES-----RSLRGIY-------EPQSLAVAKALWQEREKEALDSDIAPGQ 249
Query: 205 VLPNRTLIEIAKQLPTTAAKLRRL 228
+L N TL+E+AK++P + +LRR+
Sbjct: 250 ILSNTTLVELAKRIPRSVNQLRRI 273
>gi|406894045|gb|EKD38950.1| hypothetical protein ACD_75C00553G0006 [uncultured bacterium]
Length = 378
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 37/244 (15%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 81
L ++ D K++H A +D+ LQR G N+FDT A+ L SL L+
Sbjct: 69 LGQLLSDRGVVKILHDAPQDLAILQRATGATPQNIFDTRLAAGFSNLPATLSLGNLVKEL 128
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL-----LYIYDIMKIKLSSMPKESEN- 135
+ +KE +W RPL +E +RYA +D YL L + I+ K+ S +E N
Sbjct: 129 LDIELSKEETRTNWLQRPLTEEQVRYALDDVRYLRAVRVLLLSRIIGPKIRSWLQEDLNL 188
Query: 136 -------SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLC 188
TP E Y R ++ L+ LA++ L
Sbjct: 189 LNNPATYCGTPADERYLRIRNI-----------------------GTLDRPGLAILMNLT 225
Query: 189 EWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 248
WRD +A+ D G+++ + L+EIA++ P T +L+ + + + +Y +++II
Sbjct: 226 TWRDGMAKKHDRPRGHIIKDTILLEIARKKPRTLLELKNGSEISDNAMNKYGQNIVAIID 285
Query: 249 NSMQ 252
+++
Sbjct: 286 TTLK 289
>gi|403737804|ref|ZP_10950532.1| ribonuclease D [Austwickia chelonae NBRC 105200]
gi|403191916|dbj|GAB77302.1| ribonuclease D [Austwickia chelonae NBRC 105200]
Length = 479
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G++ +FDT +R+ R L +L H+ GV KE+ D
Sbjct: 173 VLHAATQDLPCLA-ELGLHPTRLFDTELGARLAGQPRVGLAAVLEHYLGVTLAKEHSAVD 231
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ L K +E ++ +
Sbjct: 232 WSTRPLPEPWLRYAVLDVEVLVTLRDAVEKDLHDQGK---------SEWARQEFHALTS- 281
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + + + GL + + +AV L RD +AR+ D S V+P+ L++I
Sbjct: 282 FAGPARRVDPWRRLSGLHKIR-DRRTMAVARELWFARDDVARSRDISPSRVIPDAALLDI 340
Query: 215 AKQLPTTAAKL 225
A LP + +++
Sbjct: 341 AHALPQSLSEV 351
>gi|421738653|ref|ZP_16177001.1| ribonuclease D [Streptomyces sp. SM8]
gi|406692927|gb|EKC96600.1| ribonuclease D [Streptomyces sp. SM8]
Length = 418
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L EV +D + ++H A +D+ L RD G+ +FDT A R+ R L ++ +
Sbjct: 111 LGEVVED--AEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVL 167
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G + K + DW RPLP+ LRYA D L + D ++ +L+ K +
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAH-----Q 222
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+ K+ S +H +QLAVV L RD IA+ D S
Sbjct: 223 EFDAIASAPPAPPRKDPWRRTSGMHKV------RRRRQLAVVRELWNARDKIAQRRDISP 276
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRL 228
G VLP+ ++E A LP L RL
Sbjct: 277 GKVLPDAAIVEAALALPVDVQALGRL 302
>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
Length = 414
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A R+ ER +L L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELGLTPSALFDTELAGRLAGFERVALGTLVELLLGYRLEKGHGAAD 161
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D L+ + D+++ +L K E +D R
Sbjct: 162 WSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQGK---------LEWALEEFDAARTA 212
Query: 155 ----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
E S +H + +QLA V L E RD +AR D + G VLP+
Sbjct: 213 PLPKPRAEPWRRTSGIHRI------RSTRQLAAVRSLWETRDALARERDLAPGRVLPDSA 266
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L++ A + P A L L + R G + ++ +
Sbjct: 267 LVDAATRNPADEAALLALPVFRGRAQRRMAGTWMGALRKA 306
>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
Length = 372
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
+MHG+D D+ L++ +FDT ASR+L + L +L+ H+ GV K Q AD
Sbjct: 88 IMHGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGHTQFGLVHLVAHYLGVTLEKGSQKAD 147
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC-RQ 153
W RPL M YAR DTHYL ++ D +K SD + ++C R
Sbjct: 148 WAKRPLTPRMEAYARNDTHYLKHLADRLK------------SDLEVKGRLGWHQELCARL 195
Query: 154 LYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ E E ++ ++G+ L LAV+ + WR+ A + +VL + TLI
Sbjct: 196 IIECSQNPEPDPDLVWRIKGSNRLYRPALAVLREVWRWREAEAIVANRPPYFVLRHETLI 255
Query: 213 EIA 215
+++
Sbjct: 256 DLS 258
>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
Length = 376
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYL 77
+ P +R +F+D KV+H +D+ L +FDT A+ L + ++ S +
Sbjct: 60 LSPLVR-LFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMRQQASYASV 118
Query: 78 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 137
+ H+ GV+ K DW RPL E L YA +D YL IY M +L M
Sbjct: 119 VEHYMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERL--MKTNRLGWL 176
Query: 138 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
P Y + R + +YLH+ + L +Q+A+ +C WR+ A
Sbjct: 177 MPEMNAYTAPENFKRD-------PKEAYLHLK--RSNSLTRRQMALAREICAWREERAAQ 227
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK 248
+ +++ + TL+EI K+ P T+ +L+R ++ S + + +L+ IK
Sbjct: 228 HNIPRKWIISDETLVEICKRSPATSERLKR-IRGTESLSQESVASILAAIK 277
>gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
Length = 443
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 35 VMHGADRDIVWLQRDFGIY--------LCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA 86
V+H A +D+ L + G++ +FDT +R+ ER L L+ +
Sbjct: 115 VLHAASQDLACLA-EVGMHPPARRPDGTGGLFDTELGARLGGHERVGLGPLVAEVLKLEL 173
Query: 87 NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR 146
K + +DW RPLP+ LRYA D L+ + DI++ +L K + ++
Sbjct: 174 EKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGK---------LDWARQ 224
Query: 147 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 206
+D + +E + GL +QLAVV L E RD +AR D + VL
Sbjct: 225 EFDAVASAPPPKPRAE-PWRRTSGLHKV-RRPRQLAVVRALWESRDELARRRDMTPTRVL 282
Query: 207 PNRTLIEIAKQLPTTAAKLRRL 228
P++ +I+ A LP TAA++R +
Sbjct: 283 PDQAIIDSALSLPGTAAQMRTI 304
>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
Length = 432
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMLPTRLFDTELAGRLAGFPRVGLGAMVENVLGYVLEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + + ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV L + RD IAR D S G VLP+ ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIARRRDLSPGKVLPDAAIVEA 285
Query: 215 AKQLPTTAAKLRRL 228
A LP A L L
Sbjct: 286 ALALPADARALAAL 299
>gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
Length = 428
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ L R +L ++ G+ K +
Sbjct: 113 TDEWVLHAADQDLPCLA-ELGMRPPKLYDTELAGRLAGLARVNLATMVSELLGLQLMKGH 171
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLPD+ L YA D LL + D + L K T+ + ++
Sbjct: 172 GAADWSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGK---------TDWAIQEFEH 222
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R YE + + G+ N + LA V L RD IAR D + G +LP+
Sbjct: 223 LRT-YEAAPTRRDRWRRTSGIHKVR-NPRALAAVRELWTTRDHIARRRDIAPGRILPDAA 280
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I A P + KL L
Sbjct: 281 IINAATADPDSVEKLTAL 298
>gi|389585358|dbj|GAB68089.1| 3'-5' exonuclease domain containing protein [Plasmodium cynomolgi
strain B]
Length = 1136
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++DTL + Q+ L EV DP K+++ + +Q+DF IY N+ D S
Sbjct: 522 DYIIDTLHMFEQMHE-LNEVTTDPNILKILYKSKNITPVMQKDFSIYFVNIIDISICSDF 580
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L + RNSL YL+H++ V+ N + RPL +M+ R HYL Y+++ +K L
Sbjct: 581 LSV-RNSLPYLVHNYFHVSVNSAGHGLNALTRPLSPDMVHNLRTPFHYLYYLFEYVKTDL 639
>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
Length = 416
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLAAVLEELLGVTLAKEHSAAD 158
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLAYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKHPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK 265
A LP T LR+ R ++ I+ +++A + A +++
Sbjct: 268 AAALPRTVPALRQTSGFHGRAASREAPRWIAAIRAGVEDAERGDAPAAQIR 318
>gi|374985846|ref|YP_004961341.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
Length = 424
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 114 VLHAATQDLPCL-RDIGMLPGRLFDTELAGRLAGFARVGLGAMVENILGYALEKGHSAVD 172
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D L+ + D ++ +L+ K + + +
Sbjct: 173 WSTRPLPDPWLHYAALDVELLVDLRDALEEELTRQGKLNWAH-----QEFAAIAAAPPAP 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
K+ S +H +Q+AVV L RD IA+ D S G VL + ++E
Sbjct: 228 PRKDPWRRTSGMHKV------RRRRQMAVVRELWTARDKIAQRRDVSPGKVLGDAAIVEA 281
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A LPTTA L L H R +
Sbjct: 282 ALALPTTARALGALGGFGHRMGRRQL 307
>gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
gi|421735613|ref|ZP_16174522.1| ribonuclease D [Bifidobacterium bifidum IPLA 20015]
gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
gi|407297096|gb|EKF16569.1| ribonuclease D [Bifidobacterium bifidum IPLA 20015]
Length = 428
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + M+ +L S K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKSQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 413
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 97 VLHSADQDLPCLA-ELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 155
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D LL + + M +L++ K TE + ++ R
Sbjct: 156 WSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGK---------TEWAAQEFEHVRLA 206
Query: 155 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + I+ L+ + +QLA V L RD IAR D S +LP+ ++
Sbjct: 207 GPPQPKPDRWRRTSQIHSLK----SPRQLAAVRELWTTRDEIARKRDISPSRILPDSAIV 262
Query: 213 EIAKQLPTTAAKLRRL 228
A P + LR L
Sbjct: 263 TAASADPKSIDTLRAL 278
>gi|390937080|ref|YP_006394639.1| 3'-5' exonuclease [Bifidobacterium bifidum BGN4]
gi|389890693|gb|AFL04760.1| 3'-5' exonuclease [Bifidobacterium bifidum BGN4]
Length = 456
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 136 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 195
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + M+ +L S K+ +D + R+ +L I
Sbjct: 196 ALDVELLIELRRKMQRELKSQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 247
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 248 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 307
>gi|404446630|ref|ZP_11011735.1| ribonuclease D [Mycobacterium vaccae ATCC 25954]
gi|403650123|gb|EJZ05402.1| ribonuclease D [Mycobacterium vaccae ATCC 25954]
Length = 442
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 14/195 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G++ +++DT A R+ +R +L ++ G+ K + AD
Sbjct: 131 VLHAADQDLPCLA-EIGMHPPSLYDTELAGRLANYDRVNLAAMVQRLLGLQLTKGHGAAD 189
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDVCRQ 153
W RPLP E L YA D LL + D + L +E +D E Y R+ +
Sbjct: 190 WSKRPLPAEWLNYAALDVEVLLELRDAVDAVL----QEQGKADWAAQEFEYLRTAEATPT 245
Query: 154 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
++ S +H + + LA V L + RD IAR D + G +LP+ +I
Sbjct: 246 --RRDRWRRTSGIHKV------RDPRTLAAVRELWQTRDQIARRRDIAPGRILPDSAIIS 297
Query: 214 IAKQLPTTAAKLRRL 228
A P T KL L
Sbjct: 298 AATANPDTVEKLTAL 312
>gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
Length = 447
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + AD
Sbjct: 124 VLHAADQDLPCL-RELGFVCAELYDTELAGRLLGLAKVNLAAMVAEFLGLGLRKGHGAAD 182
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD+ L YA D L+ + D M L++ K D E + +
Sbjct: 183 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAAAGK-----DRWAREEFAYVLNRPPAP 237
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ S +H +A+ LA V L R+ IA D + G VLP+ ++
Sbjct: 238 PRPDRWRRTSNIHTIK------SARTLAAVRELWTTRESIAERRDVAPGRVLPDSAIVNA 291
Query: 215 AKQLPTTAAKLRRL 228
A PT+ A+L RL
Sbjct: 292 ATANPTSIAELTRL 305
>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
Length = 372
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 40/223 (17%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D L L GP L E+ + T KV+H A D+ Q G+ +FDT +A+ +L
Sbjct: 53 WLIDPLPL-TDTGP-LAELLQKSTLTKVLHSAGEDLEVFQAWLGVLPSPLFDTQKAAALL 110
Query: 68 KLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM---- 122
S L+ C V+ +K+ N+DW VRPL RYA +D YL+ +Y +
Sbjct: 111 GYGFGLSYAKLVEAVCQVSLDKDETNSDWLVRPLTSAQCRYAAQDVTYLVDVYSRLLGDA 170
Query: 123 --KIKLSSMPKESENSDT----PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL 176
+ +L + +E E PL + ++ ++ L
Sbjct: 171 GTQGRLEWILEEGEGVSVGGRGPLAK-FRNAWK--------------------------L 203
Query: 177 NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ LAV+ GL +WR+ AR D ++L ++ + EI + LP
Sbjct: 204 QPEALAVLYGLLDWREQQARERDRPRNWILHDKVINEIVRALP 246
>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
Length = 422
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L D G++ +FDT A R+L R L L+ G KE+ AD
Sbjct: 106 ILHAATQDLPCLS-DLGLHPAALFDTELAGRLLGYPRVGLGTLVETVLGFTMLKEHSAAD 164
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D L+ + + + +L + K++ ++ +D R
Sbjct: 165 WSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWA---------RQEFDWLRGF 215
Query: 155 ---YEKELLSENSYLH-IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
+ S +H + G +G LA V L RD IA+ D + ++P+
Sbjct: 216 EAPVRTDAWRRTSGMHRVRGRRG-------LAAVRELWTERDRIAQQRDVTPSRIIPDAA 268
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
++ A+ LP A L L ERY+
Sbjct: 269 IVAAAQDLPQDKAALLGLKGFHGRGAERYV 298
>gi|156100329|ref|XP_001615892.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148804766|gb|EDL46165.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 1114
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D+++D L + Q+ L EV DP K+++ + I +QRDF IY N+ D S
Sbjct: 511 DYILDALHIFEQMHA-LNEVTTDPNILKIVYKSKSIIPVMQRDFSIYFVNIIDISVCSDF 569
Query: 67 LKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L + RNSL +L+H++ V+ N Q + RPL + ++ R HYL Y+++ +K L
Sbjct: 570 LNV-RNSLAFLVHNYFHVSVNSAGQGFNALTRPLSTDAVQNLRMPFHYLYYLFEYVKTDL 628
>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
Length = 352
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 36 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 95
MHGAD D+ Q + ++DT A+R+L + L L+ HF G+ +K Q ADW
Sbjct: 75 MHGADYDMSLFQNAWETLPAMIWDTQTAARLLGFRQFGLAALVEHFHGITLSKSSQKADW 134
Query: 96 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 155
RPL M+ YA D +Y+L + D + L + E+ + S + R
Sbjct: 135 ARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGW-----FEEICRHSMERAR--- 186
Query: 156 EKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E+ L + +QG G LN + LA + + WRD A+ D+ V N LI+
Sbjct: 187 ERHLAGHQD---PWRIQGCGKLNRKGLAALREMWTWRDAEAKTWDKPAFMVCSNADLIQW 243
Query: 215 AKQL 218
+ L
Sbjct: 244 SVAL 247
>gi|427390129|ref|ZP_18884535.1| hypothetical protein HMPREF9233_00038 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733144|gb|EKU95950.1| hypothetical protein HMPREF9233_00038 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 409
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 33/298 (11%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F+VD + + ++G L E+ T + ++H AD+D+ L + G+ N+FDT A +L
Sbjct: 73 FLVDPVNIEDRLGG-LTELLA--TDQWILHAADQDLPSLY-ELGLRCTNLFDTEIAGMIL 128
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E SL++ L GV+ KE+ N+DW RPL E+ YA D L+ ++
Sbjct: 129 GFEHLSLQWELEELLGVHLAKEHANSDWSARPLAPELRSYAALDVELLI------PLRDR 182
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL-NAQQLAVVAG 186
+ + T E C + + AG+ + + LA++
Sbjct: 183 LLELLDDAGRTAWCE------QECEHIRTAPPKKPKPDPWRKPAKAAGIRDRRTLAILRE 236
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 246
L RD +AR D +TG V+P++ L +A + P + A + K + +RY P+
Sbjct: 237 LWFARDEVARTMDIATGKVIPDKALGALAARRPRSLADVENTPTLKRAGRKRYARPLWKG 296
Query: 247 IKNSMQNAANFEVIAQKLKE------------ERMEVASEETEVL---VLDTSSNLKI 289
+ + N E+ A +L + EVA+E E++ VL+ ++ L I
Sbjct: 297 VARAW-NLDEAELPAARLPRSSSYPSSTQNWNKHNEVAAERWEIIRPAVLERAAELGI 353
>gi|424852269|ref|ZP_18276666.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666934|gb|EHI47005.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 429
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES----ENSDTPLTEVYKRSYDV 150
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSGWAAQEFEHIRLAGPPKPKADR 226
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSA 271
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I+ A + P + LR L
Sbjct: 272 IIDAATKDPRSIEALRAL 289
>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
Length = 445
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 129 VLHSADQDLPCLA-ELGLEPAALFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 187
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D LL + + M +L++ K TE + ++ R
Sbjct: 188 WSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGK---------TEWAAQEFEHVRLA 238
Query: 155 YEKELLSE--NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + I+ L+ + +QLA V L RD IAR D S +LP+ ++
Sbjct: 239 GPPQPKPDRWRRTSQIHSLK----SPRQLAAVRELWTTRDEIARKRDISPSRILPDSAIV 294
Query: 213 EIAKQLPTTAAKLRRL 228
A P + LR L
Sbjct: 295 TAASADPKSIDTLRAL 310
>gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
Length = 407
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L R+ G +FDT A R+L + + +L ++ F + K + AD
Sbjct: 103 ILHAADQDLPCL-RELGFTPTTLFDTELAGRLLNIPKVNLAAMVAEFLHLGLAKGHGAAD 161
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD+ L YA D L+ + D + LS ++ + + +Y + R
Sbjct: 162 WSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQ-------EFAYVLARPP 214
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ +I+ L+ +A+QLAVV L R+ +A D + G VLP+ +I
Sbjct: 215 SAPKPDRWRRTSNIHDLR----SARQLAVVRELWTAREELAALRDVAPGRVLPDSAIITA 270
Query: 215 AKQLPTTAAKLRRL 228
A P L RL
Sbjct: 271 ATANPVDGKALTRL 284
>gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
27678]
gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1]
gi|171278299|gb|EDT45960.1| 3'-5' exonuclease [Bifidobacterium dentium ATCC 27678]
gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1]
Length = 433
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 111 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 170
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 163
D L+ + M+ +L K + + L+E KE
Sbjct: 171 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFAYALHEGMGPRKE--HPV 217
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 218 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 277
Query: 224 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 278 QFRAIRSINERVRIQSDAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 330
>gi|367467634|ref|ZP_09467558.1| Ribonuclease D [Patulibacter sp. I11]
gi|365817309|gb|EHN12283.1| Ribonuclease D [Patulibacter sp. I11]
Length = 388
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 15/208 (7%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L EV DP + V+H A +D+ L+R + + +FDT A+ L R + Y LL
Sbjct: 68 LAEVLADPEIEIVLHAARQDVALLKRTWKTEVRGVFDTQVAAGFAGL-RAQMGYDALLRE 126
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 140
V K W RPL +E RYA ED +LL + + L + ES + +
Sbjct: 127 MLRVKLQKSASFTRWEQRPLSEEQRRYAAEDVQHLLQ----LAVALQNRLVESGRLEWAV 182
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 200
E CR L E + + L + L+ Q AV L EWR+ A D
Sbjct: 183 EE--------CRALEEVHDSRDPADLFPRLPRIDRLDPAQRAVAYALLEWREETAEQVDR 234
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRL 228
VL ++TL+E+AK+ PT+ +L+++
Sbjct: 235 PPSTVLQDQTLVELAKRRPTSRERLKQI 262
>gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010]
gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010]
Length = 428
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + M+ +L + K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKAQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
Length = 433
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 111 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 170
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 163
D L+ + M+ +L K + + L+E KE
Sbjct: 171 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFTYALHEGMGPRKE--HPV 217
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 218 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 277
Query: 224 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 278 QFRAIRSINERVRIQADAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 330
>gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397737347|ref|ZP_10504019.1| 3'-5' exonuclease family protein [Rhodococcus sp. JVH1]
gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1]
gi|396926786|gb|EJI94023.1| 3'-5' exonuclease family protein [Rhodococcus sp. JVH1]
Length = 429
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDV 150
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADR 226
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDAA 271
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I+ A + P + LR L
Sbjct: 272 IIDAATKDPRSIEALRAL 289
>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
Length = 393
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 12/207 (5%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHF 81
L E+ ++P KV+H D+ R GI +M DT AS + + L+H
Sbjct: 73 LAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALCGYGFSVGFGKLVHAV 132
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
G KE +DW RPL + YA D YL + I+ +KL ++ + LT
Sbjct: 133 LGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGR--------LT 184
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
V + + RQ + + + +NS I Q L+ +QLA++ L +WR+ +A+ D
Sbjct: 185 WVAEDCEAMLRQFADNQAV-DNSDARIK--QAWRLSQRQLAILKKLAQWREEVAQRRDVP 241
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKLRRL 228
V+ +L+++A++ P A+LR+L
Sbjct: 242 RNRVIKEHSLLDLAQRTPDHVAQLRKL 268
>gi|433603682|ref|YP_007036051.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
gi|407881535|emb|CCH29178.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
Length = 428
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 38/234 (16%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + + +FDT A R+ ER +L L+ G K + AD
Sbjct: 103 VLHAASQDLPCLA-ELDLRPSVLFDTELAGRLAGFERVALGTLVERLLGYRLEKGHGAAD 161
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESENSDT-----PLTEV 143
W RPLP + L YA D L+ + D+++ +L K E E + T P E
Sbjct: 162 WSRRPLPADWLNYAALDVELLVELRDVLEAELKKQGKLEWALEEFEAARTAPLPKPRAEP 221
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++R+ + R + +QLA V L E RD +AR D + G
Sbjct: 222 WRRTSGIHRI----------------------RSPRQLAAVRSLWETRDALARERDIAPG 259
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANF 257
VLP+ L+E A + P A L L + R ++++ ++Q AA
Sbjct: 260 RVLPDSALVEAAVRNPPDEAGLLALPVFRGRAQRR----MVAVWLGALQRAAAL 309
>gi|365824673|ref|ZP_09366747.1| hypothetical protein HMPREF0045_00383 [Actinomyces graevenitzii
C83]
gi|365259733|gb|EHM89718.1| hypothetical protein HMPREF0045_00383 [Actinomyces graevenitzii
C83]
Length = 424
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ +FDT A+R+L E+ L +L+ G + KE+ AD
Sbjct: 94 ILHAADQDMPCLAK-LGMRPDALFDTELAARILGREKRGLGHLIEDTLGWHLAKEHSAAD 152
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIM--------KIKLSSMPKESENSDTPLTEVYKR 146
W VRPLP L YA D L+ + + K++ + E E + P E
Sbjct: 153 WSVRPLPTSWLNYAALDVELLIDLRSALLTELELAGKLQWALAEFEFERTAPPRPE---- 208
Query: 147 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 206
+ + H++G G A+ A++ L R+ IA+A D VL
Sbjct: 209 --------------RVDPWRHMHG-AGRVTTARGRAILRNLWLTREEIAKAQDLPPVKVL 253
Query: 207 PNRTLIEIAKQLPTTAAKLR--RLLKSK--HSYIERYMGPVLSIIK 248
P+ ++ +AK++P + +LR R + S+ +Y+E++ V S +K
Sbjct: 254 PHYAIVAVAKRMPNSRKQLRAIREMSSRDARAYMEQWWKAVDSAMK 299
>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
Length = 373
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLH 79
P++ ++ +P KV+H D+ Q F L + DT + L + L++
Sbjct: 69 PFI-DLLANPNIVKVLHACSEDLEIFQHQFNQALTPLIDTQIMAAFSGLGLSIGFAKLVN 127
Query: 80 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESENSDT 138
H+ + +K DW RPL + L+YA D +YLL IY ++ +L+ +E+ N +
Sbjct: 128 HYLNIELDKGASRTDWLARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQEC 187
Query: 139 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
L V KR+ + L + E SY L QQLA++ L +WR AR
Sbjct: 188 QLL-VNKRN----KTLELNDAYKEISY-------AWTLTRQQLAILKLLAKWRIEEARKR 235
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKL 225
D + +V+ ++LIEIAK P ++L
Sbjct: 236 DLALNFVIKEQSLIEIAKSQPKHTSQL 262
>gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
Length = 430
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 34/238 (14%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ ++FDT A+R+L + R L + HF G+ KE+ ADW RPLP + YA
Sbjct: 108 DLGMEPHHLFDTEIAARLLGMHRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE-----KELLSEN 163
D L+ + M+ +L K + + L+E KE
Sbjct: 168 ALDVELLIELEQRMRTELKRQGKRDWAEE-----------EFTYALHEGMGPRKE--HPV 214
Query: 164 SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAA 223
+L I + + Q LAV L E RD +AR D + +L + ++IE AK+ P AA
Sbjct: 215 PWLRISRITEIAKDRQALAVAKALWEKRDELARRFDIAPALLLSDFSIIEAAKRKPHNAA 274
Query: 224 KLRRLLK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERME 270
+ R + ++ ERY P+ +K S+ + VI Q L R E
Sbjct: 275 QFRAIRSINERVRIQADAAQEKMFERY-APIQRKVKPSLWKS----VIQQALDMPRSE 327
>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
Length = 427
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ +FDT SR+ L R L ++ G+ KE+ D
Sbjct: 104 VLHAANQDLPCLA-EVGMRPTRLFDTELGSRIAGLPRVGLGAVVEELLGLRLAKEHSAVD 162
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ L YA D L+ + D + +L++ K E + D +
Sbjct: 163 WSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWA-----LEEFAAVADAPAPV 217
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E S LH A + +QLAVV L + RD AR D S G +LP+ ++
Sbjct: 218 PPAEPWRRVSGLH------AVRSRRQLAVVRALWQARDEEARRRDTSPGRLLPDSAIVAA 271
Query: 215 AKQLPTT 221
A+ P T
Sbjct: 272 ARATPRT 278
>gi|421734277|ref|ZP_16173355.1| ribonuclease D [Bifidobacterium bifidum LMG 13195]
gi|407077784|gb|EKE50612.1| ribonuclease D [Bifidobacterium bifidum LMG 13195]
Length = 428
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + M+ +L + K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKAQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNARAFRMI 279
>gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74]
gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74]
Length = 430
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 36 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 95
+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHTLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 96 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 155
RPLP+ LRYA D L+ + D ++ +L K E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA-----LEEFDAIATAPPPAP 234
Query: 156 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
K+ S +H +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRV------RRRRQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 216 KQLPT 220
+P
Sbjct: 289 LAVPV 293
>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213 = JCM 1192]
Length = 433
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|359148168|ref|ZP_09181389.1| ribonuclease D, partial [Streptomyces sp. S4]
Length = 333
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L EV +D + ++H A +D+ L RD G+ +FDT A R+ R L ++ +
Sbjct: 111 LGEVVED--AEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVL 167
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G + K + DW RPLP+ LRYA D L + D ++ +L+ K +
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAH-----Q 222
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+ K+ S +H +QLAVV L RD IA+ D S
Sbjct: 223 EFDAIASAPPAPPRKDPWRRTSGMHKV------RRRRQLAVVRELWNARDKIAQRRDISP 276
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRL 228
G VLP+ ++E A LP L RL
Sbjct: 277 GKVLPDAAIVEAALALPVDVQALGRL 302
>gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
Length = 413
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR P L EV + V+H A +D+ L + G++ ++FDT A R+
Sbjct: 79 FLIDPIPLRDHFTP-LAEVMNQ--VEWVLHAASQDLPCLA-ELGLHPPSLFDTELAGRLA 134
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+R +L L+ G K + ADW RPLP + L YA D LL + + ++ +L+
Sbjct: 135 GYQRVALGTLVESLLGYQLEKGHSAADWSRRPLPLDWLNYAALDVELLLPLREKLEEELA 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K E ++ ++ R +E + G+ A+ LA V L
Sbjct: 195 ASGK---------LEWARQEFEAVRTAKPPAPRAE-PWRRTSGIHKVR-TARGLAAVRAL 243
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
E RD +AR D + G +LP+ +I T+A L +L
Sbjct: 244 WEARDELARRRDRAPGRILPDSAIINAVLADARTSADLEKL 284
>gi|417943263|ref|ZP_12586515.1| Ribonuclease D [Bifidobacterium breve CECT 7263]
gi|376165800|gb|EHS84740.1| Ribonuclease D [Bifidobacterium breve CECT 7263]
Length = 433
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074]
gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074]
Length = 348
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L EV +D + ++H A +D+ L RD G+ +FDT A R+ R L ++ +
Sbjct: 111 LGEVVED--AEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAGFARVGLGAMVENVL 167
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G + K + DW RPLP+ LRYA D L + D ++ +L+ K +
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAH-----Q 222
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+ K+ S +H +QLAVV L RD IA+ D S
Sbjct: 223 EFDAIASAPPAPPRKDPWRRTSGMHKV------RRRRQLAVVRELWNARDKIAQRRDISP 276
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRL 228
G VLP+ ++E A LP L RL
Sbjct: 277 GKVLPDAAIVEAALALPVDVQALGRL 302
>gi|339479014|gb|ABE95475.1| Ribonuclease D [Bifidobacterium breve UCC2003]
Length = 433
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 172 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 224 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 283
>gi|392416035|ref|YP_006452640.1| ribonuclease D [Mycobacterium chubuense NBB4]
gi|390615811|gb|AFM16961.1| ribonuclease D [Mycobacterium chubuense NBB4]
Length = 435
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +++DT A R+ +R +L ++ G+ K + AD
Sbjct: 126 VLHAADQDLPCLA-EIGMRPTSLYDTELAGRLANYDRVNLAAMVQRLLGLQLTKGHGAAD 184
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D L + D + L+ K TE ++ ++ R
Sbjct: 185 WSKRPLPHDWLNYAALDVEVLAELRDAIDAVLAEQGK---------TEWARQEFEFLRT- 234
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E + + G+ + + LA V L RD IAR D + G +LP+ ++
Sbjct: 235 FEGSPTRRDRWRRTSGIHKV-RDPRALAAVRELWMTRDQIARRRDIAPGRILPDSAIVNA 293
Query: 215 AKQLPTTAAKLRRL 228
A P T KL L
Sbjct: 294 ATTDPDTVEKLTAL 307
>gi|389865548|ref|YP_006367789.1| 3'-5' exonuclease [Modestobacter marinus]
gi|388487752|emb|CCH89314.1| 3'-5' exonuclease [Modestobacter marinus]
Length = 435
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ +FDT A+R+ L R L ++ G++ K + AD
Sbjct: 126 VLHAANQDLPCLA-ELGLVPTRLFDTELAARLAGLPRVGLGAVVESLLGLSLQKGHSAAD 184
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP++ L YA D L+ + D + L K + RQ
Sbjct: 185 WSTRPLPEDWLVYAALDVEVLVELRDALAAILDEQGKT----------------EWARQE 228
Query: 155 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+E L + + + G+ G + +QL ++ L + RD +AR D + G VLP+
Sbjct: 229 FEAILAAGPPAPKVDPWRKTSGMHGLR-SRRQLGMLRALWQARDELARRRDIAPGRVLPD 287
Query: 209 RTLIEIAKQLPTTAAKL 225
++ + PTT A L
Sbjct: 288 TAMVSAVQADPTTEAAL 304
>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
Length = 392
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 16/273 (5%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
V+D L + + +L ++ +D + +KV H A +D+ + + G +FDT A
Sbjct: 52 VIDPLADDIDLSCFL-DILRDESIQKVFHAARQDVE-IFNNLGAMPKPLFDTQVAGMAAG 109
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E+ + + L+ + +K + DW RPL D L YA D +L +Y +++ +L
Sbjct: 110 FGEQIAYDALVRQMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAKLYPLLRQRLE 169
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ + +D +YDV EN++ L+ A+ LAV +
Sbjct: 170 REGRLAWVTDEMNDLTDPANYDVE---------PENAWKR---LRPRRHTAKYLAVYRAV 217
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP-VLSI 246
WR+ A+ D+ G +L + + EIA Q PT A L RL + GP +L+
Sbjct: 218 AAWRERTAQLRDQPRGRILKDDAIDEIATQTPTDADALDRLRSVPKGFSGSRFGPDLLAA 277
Query: 247 IKNSMQNAANFEVIAQKLKEERMEVASEETEVL 279
++ ++++ + + +K ++ A E+L
Sbjct: 278 VREALKDPEGYAPVIEKTRQPASPAAGAVVELL 310
>gi|400974698|ref|ZP_10801929.1| ribonuclease [Salinibacterium sp. PAMC 21357]
Length = 418
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 32 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++ ++H A +D+ L R+ G++ +FDT +R+ L R L ++ H G++ KE+
Sbjct: 96 EEWILHAATQDLTCL-REVGLHPSRLFDTELGARLAGLPRVGLGTVVEHLLGIHLAKEHS 154
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
+ADW RPLP L YA D L+ + + + L S K +D+
Sbjct: 155 SADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADK----------------HDIA 198
Query: 152 RQLYEKELLSENSYLH---------IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+Q ++ L + S + ++ L+G + LA+ L RD A+ D +
Sbjct: 199 QQEFDSVLSRDLSNVRAEPWRRLSGVHSLRG----GKNLAIARELWLARDAYAQEVDTAP 254
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 243
G ++P+ L+ A+ LP + +L + ++ + I+R+ +
Sbjct: 255 GRLVPDSALLAAARFLPESKRQLSAMKEFSGRASRTQIDRWWDAI 299
>gi|384100730|ref|ZP_10001787.1| ribonuclease D [Rhodococcus imtechensis RKJ300]
gi|383841636|gb|EID80913.1| ribonuclease D [Rhodococcus imtechensis RKJ300]
Length = 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDV 150
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADR 226
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSA 271
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I+ A + P LR L
Sbjct: 272 IIDAATKDPRGIEALRAL 289
>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
bacterium]
Length = 386
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 135/328 (41%), Gaps = 61/328 (18%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHF 81
L E+ KDPTK KV H A +D+ L R G + +FDT A+ ++ + S +++
Sbjct: 63 LLELLKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALVGWGTQISFAKIVYKA 122
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK------ESEN 135
G +K DW RPL D + YA +D YL+ +Y+ + +L M + E
Sbjct: 123 LGKKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVNA 182
Query: 136 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
+ P T Y ++ I L+ L + LAV+ + WR+ A
Sbjct: 183 WEDPKTFALPDPY--------------QRFMKIKNLR--SLRPRNLAVLQEIAAWREGEA 226
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
D ++ + TL+EIA++ P A L + + + G +LS I+ +M+
Sbjct: 227 VKRDCLAKAIIRDETLLEIARKAPRDAKTLSGIRGFYQKELNKGGGSILSAIERAME--- 283
Query: 256 NFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNV-GRESVDGVDALVGTTMPHPPAY 314
L S +++P G + GV+ L+ AY
Sbjct: 284 -------------------------LPESDLVELPESNGHATTRGVEELLS-------AY 311
Query: 315 TQLKQEPPKVGSSVAELDRNGLGSF-AH 341
Q++ E K+ SV DR + SF AH
Sbjct: 312 VQIRSEELKIEPSVLA-DRKQIHSFVAH 338
>gi|337755515|ref|YP_004648026.1| ribonuclease D [Francisella sp. TX077308]
gi|336447120|gb|AEI36426.1| Ribonuclease D [Francisella sp. TX077308]
Length = 364
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 16/220 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTL+ + L+++F+D +K++H A DI ++R F + N+FDT
Sbjct: 43 IATENEIFLIDTLE-DLDFSK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDT 100
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + SL+ LL + KE Q +DWR RPL + YA +D +L+ I
Sbjct: 101 QLAASFLGTQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEIK 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++ KL+ + + L E+ K ++ ++ K I +Q Q
Sbjct: 161 YHLESKLNQTDYKQYFHE-ELLEIQKTEFNTIDNIHNK----------IGNIQKFNEKTQ 209
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ A++ +WR+ IA+ + ++ N+ L IA + P
Sbjct: 210 KNAILVA--QWRESIAQQKNIPVRFIFDNKILYAIAHKNP 247
>gi|419967866|ref|ZP_14483740.1| ribonuclease D [Rhodococcus opacus M213]
gi|414566760|gb|EKT77579.1| ribonuclease D [Rhodococcus opacus M213]
Length = 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ +FDT A R+ ER L ++ G+ K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE----SENSDTPLTEVYKRSYDV 150
W RPLPD L YA D L+ + ++M +L K E L K D
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHIRLAGPPKPKADR 226
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ HI L+ +QLA L + R+ +AR D S VLP+
Sbjct: 227 WRRTS-----------HITSLK----TQRQLAAARSLWQAREDLARKRDVSPSRVLPDSA 271
Query: 211 LIEIAKQLPTTAAKLRRL 228
+I+ A + P LR L
Sbjct: 272 IIDAATKDPRGIEALRAL 289
>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
Length = 414
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 35 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++H A D+ WL G++ ++FDT A+R+ ER +L ++ V K Y
Sbjct: 90 IIHAAHSDLPCLGWL----GLFPGSIFDTELAARLAGFERPNLGTMVGELFDVELEKGYG 145
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE----VYKRS 147
+ADW L +E+ YA D LL + D ++ L+ E + D L E V + S
Sbjct: 146 DADWSTPQLSEELKAYAALDVELLLELADALRDILA----EQDKMDWALEEFSAIVQEHS 201
Query: 148 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
D Q + L S L + +QLA L RD IAR D + G VL
Sbjct: 202 GDFAPQPHTWRDLKGISSLR---------SGRQLAAARELWFKRDAIARRTDTAPGRVLA 252
Query: 208 NRTLIEIAKQLPTTAAKLRRL 228
N+TL+EIA+ LPTTA +L R+
Sbjct: 253 NKTLVEIARTLPTTAGELARV 273
>gi|378717672|ref|YP_005282561.1| putative ribonuclease D [Gordonia polyisoprenivorans VH2]
gi|375752375|gb|AFA73195.1| putative ribonuclease D [Gordonia polyisoprenivorans VH2]
Length = 428
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L R+ G + +FDT A R+L L + +L ++ F G K + AD
Sbjct: 107 ILHAADQDLPCL-RELGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAAD 165
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + D M L +++ SD E +Y + R
Sbjct: 166 WSKRPLPAEWLNYAALDVEVLIELRDAMDAAL----RDAGKSDWAAEEF---AYVLRRPP 218
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+I+ ++ A+ LA V L R+ IA+ D + G VLP+
Sbjct: 219 SPPRTDRWRRTANIHTVK----TARGLAAVRELWSAREEIAQRRDVAPGRVLPD 268
>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 743
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 5 TEDFVVDTLKLRVQ--VGPYLREVFKDPTKKKVMHG-ADRDIVWLQRDFGIYLCNMFDTG 61
+D+V+D L V + YL +F DP K+ HG D L RDFGI + N FDT
Sbjct: 333 VKDYVIDPLAPNVWDAIPHYLGPLFSDPRIVKIGHGIGGMDTTSLHRDFGIVIVNAFDTF 392
Query: 62 QASRVLKLERNS---LEYLLHHF---CG---VNANKEYQNADWRVRPLPDEMLRYAREDT 112
+AS VL + L L H+ C N ++Q +DWR RPL D+ L Y R D
Sbjct: 393 EASAVLLHGKKGGLGLAKLCKHYGLPCWQDYANLKSQFQCSDWRKRPLCDDALEYGRYDV 452
Query: 113 HYLLYIYDIM 122
+L+ I ++
Sbjct: 453 RFLITIRQLL 462
>gi|440701120|ref|ZP_20883331.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
gi|440276236|gb|ELP64529.1| putative ribonuclease D [Streptomyces turgidiscabies Car8]
Length = 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMIPTQLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L E RD IA+ D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWETRDRIAQRRDVSPGKVLSDAAIVEA 285
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A +P L L H R +
Sbjct: 286 ALAVPVNVNALAALTGFGHRMGRRQL 311
>gi|345002758|ref|YP_004805612.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
gi|344318384|gb|AEN13072.1| 3'-5' exonuclease [Streptomyces sp. SirexAA-E]
Length = 424
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 114 ILHAATQDLPCL-RDIGMVPTSLFDTELAGRLAGFPRVGLGAIVENLLGYALEKGHSAVD 172
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD LRYA D L+ + D ++ +L E + E +
Sbjct: 173 WSTRPLPDPWLRYAALDVELLVDLRDALEAEL-----ERQGKLEWALEEFDAIASAPPAP 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
K+ S +H +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 228 PRKDPWRRTSGMHKV------RRRRQIAVVRELWTARDQVAQRRDISPGKVLGDAAIIEA 281
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A +P A L L H R +
Sbjct: 282 ALAMPVNAHALTALPGFGHRMGRRQL 307
>gi|384197155|ref|YP_005582899.1| 3'-5' exonuclease [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333110648|gb|AEF27664.1| 3'-5' exonuclease [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 415
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 94 DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 153
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + ++M+ L + K+ E ++ T R+ + +L I
Sbjct: 154 ALDVEVLIELENLMRRDLRAAGKD-EWAEEEFTHALSEGL-APRKPHPV------PWLRI 205
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LA+ L + RD +AR D + +L + ++IE A + P AA+ R L
Sbjct: 206 SRITQLSRDPQGLAIAKSLWQERDKLARQHDIAPSLLLSDSSIIEAATRKPHNAAQFRAL 265
>gi|355575967|ref|ZP_09045340.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
gi|354817183|gb|EHF01693.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
Length = 376
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 18/210 (8%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
LR + +D + KV H +D+ + G +FDT A+ L R + Y L+
Sbjct: 63 LRRLLEDRSVTKVFHACTQDLEVILDGMGCVPAPVFDTQLAAAFLG-HRQQIGYGALVEA 121
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES--ENSDT 138
CGV K DW RPL E LRYA +D YL IY+ M +L+ + + E
Sbjct: 122 CCGVRLPKAESLTDWSRRPLDAEQLRYAEDDVIYLPRIYEQMVSELARRDRLAWLEPEMR 181
Query: 139 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
LT+ + D ++YLH+ + L +QL+V C WR+ A
Sbjct: 182 SLTDPSRVERD-----------PRDAYLHLK--RSNSLTRRQLSVAREACAWREREAARR 228
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ +V+ + L+E+ K+ P +LRR+
Sbjct: 229 NIPRKWVVSDEVLVELCKRAPRGVDRLRRI 258
>gi|359767832|ref|ZP_09271614.1| putative ribonuclease [Gordonia polyisoprenivorans NBRC 16320]
gi|359314748|dbj|GAB24447.1| putative ribonuclease [Gordonia polyisoprenivorans NBRC 16320]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L R+ G + +FDT A R+L L + +L ++ F G K + AD
Sbjct: 107 ILHAADQDLPCL-RELGFHATTLFDTELAGRLLGLTKVNLAAMVEQFLGFGLQKGHGAAD 165
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + D M L +++ SD E +Y + R
Sbjct: 166 WSKRPLPAEWLNYAALDVEVLIELRDAMDAAL----RDAGKSDWAAEEF---AYVLRRPP 218
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+I+ ++ A+ LA V L R+ IA+ D + G VLP+
Sbjct: 219 SPPRTDRWRRTANIHTVK----TARGLAAVRELWSAREEIAQRRDVAPGRVLPD 268
>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
Length = 414
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 35 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++H A D+ WL G++ ++FDT A+R+ ER +L ++ V K Y
Sbjct: 90 IIHAAHSDLPCLGWL----GLFPGSIFDTELAARLAGFERPNLGTMVAELFDVELEKGYG 145
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE----VYKRS 147
+ADW L +E+ YA D LL + D ++ L+ E + D L E V + S
Sbjct: 146 DADWSTPQLSEELKAYAALDVELLLELADALRDILA----EQDKMDWALEEFSAIVQEHS 201
Query: 148 YDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
D Q + L S L + QLA L RD IAR D + G VL
Sbjct: 202 GDFAPQPHTWRDLKGISSLR---------SGSQLAAARELWFKRDAIARRTDTAPGRVLA 252
Query: 208 NRTLIEIAKQLPTTAAKLRRL 228
N+TL+EIA+ LPTTA +L R+
Sbjct: 253 NKTLVEIARTLPTTAGELARV 273
>gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
Length = 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K + ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LDWARQEFDAIASA 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV L E RD IAR D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEA 285
Query: 215 AKQLPT 220
A LP
Sbjct: 286 ALALPA 291
>gi|385652990|ref|ZP_10047543.1| ribonuclease D [Leucobacter chromiiresistens JG 31]
Length = 396
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
+ H A +D+ L G+ +FDT A+R+L ER L ++ G+ K + AD
Sbjct: 87 IFHAASQDLPCLA-SIGLVPSRIFDTELAARLLGFERVGLGAIVEMLLGIALEKAHSAAD 145
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L + ++ +L K TE + ++ R
Sbjct: 146 WSQRPLPAEWLEYAALDVVLLPELRSVIAEQLDEQGK---------TEFAAQEFEAVRLR 196
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
EK E + + G A + LA+ L E RD +AR D + G ++P+ +++
Sbjct: 197 PEKP-RPEEPWRKLSG-SHALKTPRALALARELWEARDALARERDTAPGRLIPDSSIVAA 254
Query: 215 AKQLPTTAAKLRRLL----KSKHSYIERYMGPVL 244
+ P + L RL ++ S ++R+ +L
Sbjct: 255 SIANPRSPGDLARLRDFKGRASRSELKRWWAAIL 288
>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPTRIFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 228 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQARDRIAQRRDVSPGKVLGDAAIVEA 285
Query: 215 AKQLPTTAAKLRRL 228
A LP A L L
Sbjct: 286 ALALPPNAHALAAL 299
>gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus]
Length = 430
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K + ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LDWARQEFDAIASA 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV L E RD IAR D S G VL + ++E
Sbjct: 228 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEA 285
Query: 215 AKQLPT 220
A LP
Sbjct: 286 ALALPA 291
>gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071]
gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071]
Length = 431
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 36 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 95
+H A +D+ L R+ G+ ++FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHSLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 96 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 155
RPLP+ LRYA D L+ + D ++ +L E + E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKEL-----ERQGKLEWALEEFDAIASAPPPAP 234
Query: 156 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
K+ S +H + +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRVRRR------RQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 216 KQLPTTAAKL 225
+P L
Sbjct: 289 LAVPVNVHAL 298
>gi|310287702|ref|YP_003938960.1| ribonuclease D [Bifidobacterium bifidum S17]
gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17]
Length = 428
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+R+L L R L + H+ GV KE+ ADW RPLP + YA
Sbjct: 108 DIGLAPQALFDTEIAARMLGLHRFGLAAVTEHYLGVTFAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + M+ +L K+ +D + R+ +L I
Sbjct: 168 ALDVELLIELRRKMQRELKVQGKDGW-ADEEFRYALQTGMGPRRE-------HPVPWLRI 219
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + Q LAV L E RD +ARA D + G +L + +++E A + P A + R +
Sbjct: 220 SHINTVSQDHQGLAVAKALWEKRDELARAYDIAPGLLLSDDSIVEAASRKPRNAREFRMI 279
>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
Length = 376
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 26/214 (12%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L + D + KV H +D+ + +FDT A+ L R + Y L+
Sbjct: 63 LARLLTDESITKVFHACSQDLEVIYDALHCVPGPIFDTQLAAAFLG-HRQQIGYGALVDA 121
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD------IMKIKLSSMPKESE 134
CGV K DW RPL E L YA +D YL IYD IM+ +L + E
Sbjct: 122 CCGVRLPKAESLTDWSRRPLDAEQLAYAEDDVRYLPGIYDQMMAELIMRDRLPWLAPEMA 181
Query: 135 NSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVI 194
+P + R + E +YLH+ + L +QLA+ +C WR+
Sbjct: 182 ELVSPAH--FMR-------------VPEEAYLHLR--RSGSLTRRQLAIAREVCAWRESA 224
Query: 195 ARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
A D +V+ + ++E K+ P T +LRR+
Sbjct: 225 AARRDVPRKWVVSDELIVEACKRAPRTLDRLRRI 258
>gi|392550649|ref|ZP_10297786.1| RNase D, processing tRNA s [Pseudoalteromonas spongiae
UST010723-006]
Length = 375
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 111/260 (42%), Gaps = 26/260 (10%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
++ ++P KV+H D+ R +FDT A +L ERN + + ++
Sbjct: 68 QLMENPNIIKVLHSPSEDLEVFARHGNCTPAPLFDTQFALSLLG-ERNCVGFANMVEMLL 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
+K +W RPL L YA D YL+ ++I+K KL N D
Sbjct: 127 EEQIDKSESRTNWLQRPLTKAQLDYAAADVFYLMPCFNIIKEKL--------NDDKQGIV 178
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+ + ++ YE L E +YL I LN +QLAV+ L WR AR + +
Sbjct: 179 FGESAVIANKRKYETPL--ELAYLDIKN--AWQLNPKQLAVLQQLAAWRLNRAREKNLAL 234
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIK-----------NSM 251
+++ L EIAK PT L+RL + + RY +L+++K +
Sbjct: 235 NFIVKEHILFEIAKTQPTHFGALKRLCEGDQGLLNRYGKTLLNLVKIGLDKDEAEHPEKI 294
Query: 252 QNAANFEVIAQKLKEERMEV 271
Q +F + LKE R E+
Sbjct: 295 QRLIDFHGYKKTLKELRAEL 314
>gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4]
gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4]
Length = 428
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ +FDT A R+ ER L ++ G K + AD
Sbjct: 108 ILHSADQDLPGLA-EIGLAPATLFDTELAGRLAGFERVGLAAIVERTLGFELRKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDVCRQ 153
W RPLPD L YA D L+ + + M +L E SD E + R R
Sbjct: 167 WSKRPLPDTWLNYAALDVEVLVELRNAMAAELG----EQGKSDWAAQEFEHIRLAGPPRP 222
Query: 154 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
++ + HI L+ +QLA V L + R+ +AR D S VLP+ +I+
Sbjct: 223 KPDRWRRTS----HITSLK----TQRQLAAVRSLWQAREDLARKRDVSPSRVLPDSAIID 274
Query: 214 IAKQLPTTAAKLRRL 228
A + P + LR L
Sbjct: 275 AATKDPRSIEALRAL 289
>gi|336320604|ref|YP_004600572.1| 3'-5' exonuclease [[Cellvibrio] gilvus ATCC 13127]
gi|336104185|gb|AEI12004.1| 3'-5' exonuclease [[Cellvibrio] gilvus ATCC 13127]
Length = 443
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + + +FDT A+R+L +ER L ++ G+ KE+ D
Sbjct: 130 VLHAASQDLPGLV-EQNLRPSRVFDTELAARLLGMERVGLAAVVADTLGLGLAKEHSAVD 188
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E LRYA D L+ + ++ +L+ K + + ++ R
Sbjct: 189 WSTRPLPAEWLRYAALDVEVLVEVRQVLAERLAVAGK---------AQWAAQEFEAVRTA 239
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E + + GL A +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 240 PPAPPRVE-PWRRVSGLH-AIRDARRLAVVRELWATRDTNARQRDISPGRVLPDAAIVAA 297
Query: 215 AKQLPTTAAKLRRL 228
A+ LP +L L
Sbjct: 298 AQALPRAVPQLTAL 311
>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 383
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
++D L + + P+ R + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLAPDIDLKPFFR-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
+L E EN L E + R+ Y+ E+++ L+ Q+LA
Sbjct: 166 SAEL-----ERENRAHWLNE--EMEVLTSRETYDPH--PEDAWKR---LKMRLRKPQELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V G+ WR+ AR D G VL + + E+A+Q P AA L +L
Sbjct: 214 IVQGVAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAALGKL 259
>gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG]
gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF]
Length = 431
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 36 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 95
+H A +D+ L R+ G+ ++FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHSLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 96 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 155
RPLP+ LRYA D L+ + D ++ +L E + E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKEL-----ERQGKLEWALEEFDAIASAPPPAP 234
Query: 156 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
K+ S +H + +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRVRRR------RQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 216 KQLPTTAAKL 225
+P L
Sbjct: 289 LAVPVNVHAL 298
>gi|383458490|ref|YP_005372479.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
gi|380734173|gb|AFE10175.1| putative ribonuclease D [Corallococcus coralloides DSM 2259]
Length = 381
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 19/260 (7%)
Query: 5 TEDFVVDTLKLRVQVGP-YLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
T+ F+ DTL+ V P L + +DP + K H A D+ +L + G+ + +FDT +A
Sbjct: 47 TDIFLFDTLQ--PGVDPRLLSPMMEDPARTKYFHAAQGDLQFLA-EAGVRVRGLFDTHRA 103
Query: 64 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
+L + L L GV KE+Q +D+ +RPLP M Y D YL
Sbjct: 104 VTLLGWPKVGLADLARERLGVELPKEHQQSDFSLRPLPPGMRDYIANDVRYL-------- 155
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ--- 180
+L +++ L EV D R E E E + L GL+ Q
Sbjct: 156 CELGRQVRDACREADILEEVL---LDCERMCAEAEARPEVGAEYKPKLSRTGLSTAQYAL 212
Query: 181 -LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
A+ GL + R A D+ G +L N + ++A + P T L R + + + +
Sbjct: 213 AYAIAQGLHKLRLEWAEKDNVPMGRMLSNMAITDLALKQPDTHKDLARAAGVRGAVVRAH 272
Query: 240 MGPVLSIIKNSMQNAANFEV 259
+L++I++ Q A E+
Sbjct: 273 GDDILALIRDHQQKATRGEL 292
>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|384199780|ref|YP_005585523.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 433
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ L +L I
Sbjct: 172 ALDVEVLIELETLMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-LHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLTDSSIIEAATNKPHNAAQFRAL 283
>gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78]
gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78]
Length = 431
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 36 MHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADW 95
+H A +D+ L R+ G+ ++FDT A R+ R L ++ + G K + DW
Sbjct: 121 LHAATQDLPCL-REIGMVPHSLFDTELAGRLAGFPRVGLGAMVENVLGYTLEKGHSAVDW 179
Query: 96 RVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLY 155
RPLP+ LRYA D L+ + D ++ +L E + E +
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKEL-----ERQGKLEWALEEFDAIASAPPPAP 234
Query: 156 EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
K+ S +H + +QLAVV L RD IAR D S G VLP+ ++E A
Sbjct: 235 RKDPWRRTSGMHRVRRR------RQLAVVRELWTLRDRIARRRDVSPGKVLPDAAIVEAA 288
Query: 216 KQLPTTAAKL 225
+P L
Sbjct: 289 LAVPVNVHAL 298
>gi|442323525|ref|YP_007363546.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
gi|441491167|gb|AGC47862.1| putative ribonuclease D [Myxococcus stipitatus DSM 14675]
Length = 389
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++DTL+ V+ L + +P + K H A D+ +L + G+ + +FDT +A+ +L
Sbjct: 58 FLLDTLQPGVEAR-LLAPLMGEPGRTKYFHAAQGDLQFLA-EAGVRVRGLFDTHRAATLL 115
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ L + GV KE+Q +D+ +RPLP M Y D YL +L
Sbjct: 116 GWPKVGLADIAREKLGVELPKEHQQSDFSLRPLPPGMRDYIANDVRYL--------CELG 167
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL----AV 183
+E+ L EV +C + + + + L +GL+ Q+ A+
Sbjct: 168 RQVREATREAGILEEVELDCERLCDEAVARPDVGADFKPK---LPRSGLSPAQMTLANAI 224
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 243
L + R A ++ G +L N + +IA +LP++ L R + S++ + V
Sbjct: 225 AHALHKKRLEWAEKENVPMGRMLSNMAIADIATRLPSSPRDLARAAGVRGSFVRTHGDEV 284
Query: 244 LSIIKNSMQNAANFEV 259
L+I++ + A N E+
Sbjct: 285 LAILREQQEKARNGEL 300
>gi|90416003|ref|ZP_01223936.1| ribonuclease D [gamma proteobacterium HTCC2207]
gi|90332377|gb|EAS47574.1| ribonuclease D [gamma proteobacterium HTCC2207]
Length = 374
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 16/248 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++DT + Q+ P L + P V H D+ L + + +FD+ A+ ++
Sbjct: 55 WLIDTPAIE-QLQP-LTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIV 112
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
+ S+ Y L+ + + KE +DW RPL D RYA +D YL IY ++
Sbjct: 113 NIG-YSMGYARLVENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLEL 171
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L ++S ++ L D+ R E+ + + YL + G L+A LAV+
Sbjct: 172 LEQQQRQSWFAEEML--------DLQRVAAERRE-ALDYYLRVKG--AWRLDALSLAVLK 220
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS 245
LCEWR+ ARA D+ +++ + L+E+A PT ++L ++ ++R+ VL
Sbjct: 221 RLCEWRERAARALDKPRSHIVKDNVLLELANNKPTHMSQLHQIDDWYSRSVKRFGEQVLQ 280
Query: 246 IIKNSMQN 253
I N N
Sbjct: 281 EIANVDHN 288
>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 722
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 42/231 (18%)
Query: 1 MSLRTEDFVVDTLKLRVQVG--PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMF 58
+S D+++D L + + G L +VF K+ + +DI+WL+RDF + + N F
Sbjct: 68 ISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVNYF 127
Query: 59 DTGQASRVLKL-ERNSLEYLLHHFCGVNAN----KEYQNADWRVRPLPDEMLRYAREDTH 113
D + + LK + NSL L+ +C + KE Q ++W RPL E L YA D+H
Sbjct: 128 DVKECASFLKKSDDNSLIQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALDSH 187
Query: 114 YLLYI-YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL-------YEKELLSENSY 165
YL+ I Y+++ +T + +KR+ +V Q+ YEK+ Y
Sbjct: 188 YLIKIRYELL-------------CETIQSVGFKRTIEVINQMQQQTLKKYEKKKF---DY 231
Query: 166 LHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
+ + L Q+L ++ D +S Y + N IAK
Sbjct: 232 QYFFDLFQKQFKHQELYA-----------SQIDKQSEVYRIINVIYCRIAK 271
>gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
Length = 416
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ ++FDT A R+L ER L ++ G+ KE+ D
Sbjct: 90 VLHAANQDLPCLA-EVGLVPRHVFDTELAGRLLGRERVGLAAIVEQELGLTLAKEHSAVD 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPL ++ LRYA D L+ + D ++ L K E ++
Sbjct: 149 WSTRPLREDWLRYAALDVEVLVELRDALERDLVRAGKAEWAR-----EEFEALRLAPPPA 203
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E S H A + +QLAV+ L RD + + D + G VLP+R ++
Sbjct: 204 PRPEPWRRTSGSH------AVRDPRQLAVMRALWVERDAVGQERDIAPGRVLPDRAIVAA 257
Query: 215 AKQLPTTAAKL 225
A LP T A L
Sbjct: 258 ATALPRTEAAL 268
>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
Length = 433
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L G+Y + DT A R+L LER +L L GV K + D
Sbjct: 98 IIHAAHSDLPCLA-ALGLYPTKVIDTELAGRLLGLERVNLAALTERLLGVGLAKGHGRED 156
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D L+ + +++ L+ + + + Q
Sbjct: 157 WSTRPLPADWLDYAALDVELLIELAEVLCQALTELDR----------------LEWLEQE 200
Query: 155 YEKELLSENSYL------HIY-GLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYV 205
E+EL YL H + GL+G G +QL V L RD IA+ D S +V
Sbjct: 201 CERELAINRKYLDGLHVGHSWQGLKGIGKLRTPEQLHVARALWTERDEIAQQRDVSPTHV 260
Query: 206 LPNRTLIEIAKQLPTTAAKL 225
+ + L IA+QLP T +L
Sbjct: 261 MGHSVLRTIAEQLPGTQREL 280
>gi|357021611|ref|ZP_09083842.1| 3'-5' exonuclease [Mycobacterium thermoresistibile ATCC 19527]
gi|356479359|gb|EHI12496.1| 3'-5' exonuclease [Mycobacterium thermoresistibile ATCC 19527]
Length = 437
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ ++DT A R+ R +L ++ G+ K + AD
Sbjct: 125 VLHAADQDLPCLA-ELGMRPPRLYDTELAGRLAGFARVNLATMVQQLLGLQLMKGHGAAD 183
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D LL + + L K E ++ R
Sbjct: 184 WSKRPLPAEWLNYAALDVEVLLELRAAIAEVLDDQGK---------AEWAAEEFEYLRT- 233
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
YE + + G+ N + LA V L RD IAR D + G +LP+ +I+
Sbjct: 234 YEAPPTRRDRWRRTSGIHKV-RNGRALAAVRELWVTRDQIARRRDIAPGRILPDSAIIDA 292
Query: 215 AKQLPTTAAKLRRL--------LKSKHSYIE 237
A P T ++L L +S H ++E
Sbjct: 293 ATTDPKTISELTALPVFGGAKQRRSAHIWLE 323
>gi|359773330|ref|ZP_09276728.1| putative ribonuclease, partial [Gordonia effusa NBRC 100432]
gi|359309527|dbj|GAB19506.1| putative ribonuclease, partial [Gordonia effusa NBRC 100432]
Length = 427
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D ++ +GP + E P + ++H AD+D+ L R+ + ++DT A R+L
Sbjct: 91 FLIDPIEHPEALGPII-EALDGP--EWILHAADQDLPCL-RELDFHCAALYDTELAGRLL 146
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L R +L ++ HF G+ K + ADW RPLP + L YA D L+ + + + +L+
Sbjct: 147 GLPRVNLAAMIAHFLGLGLAKGHGAADWSRRPLPADWLNYAALDVEVLVELREAIADELA 206
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K S+ + V R R + S +H Q + LA V L
Sbjct: 207 ATGK-SDWAAQEFDYVLHRPPSPPR----TDRWRRTSNIHSIKTQ------RGLATVREL 255
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R+ +A D + G VLP+ ++ A P + ++L L
Sbjct: 256 WTAREDMAARRDIAPGRVLPDSAIVTAATADPKSMSELTGL 296
>gi|417840732|ref|ZP_12486840.1| Ribonuclease D [Haemophilus haemolyticus M19501]
gi|341950543|gb|EGT77130.1| Ribonuclease D [Haemophilus haemolyticus M19501]
Length = 382
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ ++F C M DT +R L L ++ L L + V
Sbjct: 77 LLANPKVLKVLHSCSEDLLVFLQEFDQLPCPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELILA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680]
gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680]
Length = 426
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 114 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVESVLGFVLEKGHSAVD 172
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 173 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWAQQEFDAIASA 223
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV L E RD IA+ D S G VL + ++E
Sbjct: 224 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWETRDRIAQRRDVSPGKVLGDTAIVEA 281
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A LP L L H R +
Sbjct: 282 ALALPANTHALAALNGFGHRMGRRQL 307
>gi|375094980|ref|ZP_09741245.1| ribonuclease D [Saccharomonospora marina XMU15]
gi|374655713|gb|EHR50546.1| ribonuclease D [Saccharomonospora marina XMU15]
Length = 402
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 14/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D + LR + P L V D + V+H A +D+ L D G+ ++FDT A R+
Sbjct: 67 LLIDPIPLRDHLEP-LGAVLAD--TEWVLHAASQDLPCLA-DLGLRPPSLFDTELAGRLA 122
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER +L L+ + G K + ADW RPLP + L YA D L+ + + ++ +L+
Sbjct: 123 GHERVALGTLVENLLGYKLEKGHSAADWSKRPLPTDWLNYAALDVELLVPLREKLEAELA 182
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K E ++ ++ R + + G+ A+ LA V L
Sbjct: 183 AQGK---------LEWARQEFEWVRTSGGQPAPRSEPWRRTSGIHKVR-TARGLAAVRAL 232
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ RD +AR D + +LP+ +I P T A L+ L
Sbjct: 233 WQARDELARKRDRAPSRILPDSAIINAVLADPRTTADLQAL 273
>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
Length = 414
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 99/235 (42%), Gaps = 37/235 (15%)
Query: 16 RVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRD----------FGIYLCNMFDTGQASR 65
R VG +L + P + G D VWL D G+ ++FDT A+R
Sbjct: 74 REDVGTFLIDTHALPDLSALAPGVDD--VWLLHDCLQDLPNLRQVGLVPSSLFDTEIAAR 131
Query: 66 VLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
++ LER L + G+ K++Q +DW +RPLP E LRYA D L +Y + +
Sbjct: 132 LVGLERFGLAAVAEQVLGLGLVKDHQASDWSLRPLPPEWLRYAALDVELLTELYYRLSKR 191
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL---HIYGLQGAG--LNAQQ 180
L M + ++ +Q + L S L GAG + +
Sbjct: 192 LDQMGR----------------WEWAQQEFSHALSVRPSPAKPDRWRSLPGAGKVRSRRG 235
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 235
LAV+ L E R+ IAR D S G ++ N L+ A P RR L S + +
Sbjct: 236 LAVLQALWETREEIARRVDISPGRLVRNAALVRAASAPPRN----RRALMSINEF 286
>gi|377562762|ref|ZP_09792130.1| ribonuclease D [Gordonia sputi NBRC 100414]
gi|377530059|dbj|GAB37295.1| ribonuclease D [Gordonia sputi NBRC 100414]
Length = 426
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + E P + V+H AD+D+ L R+ G +FDT A R+L
Sbjct: 80 FLLDPISEPETLAPVI-EALDGP--EWVLHAADQDLPCL-RELGFRCETVFDTELAGRLL 135
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ +L ++ + + K + ADW RPLPD+ L YA D L+ + D ++ L
Sbjct: 136 GEPKVNLAAMVATYLELGLQKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVQQALV 195
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ E + V R R +K + N +H N++ LA V L
Sbjct: 196 EQGKD-EWARQEFRYVLDRPAPAPR--VDKWRRTAN--VHTVK------NSRSLAAVREL 244
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R+ +A+ D + G +LP+ ++ A +PT+ A+L RL
Sbjct: 245 WAAREELAQRRDVAPGRILPDSAIVTAANAMPTSQAELTRL 285
>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 366
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 16/220 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTL+ + L+++F+D +K++H A DI ++R F + N+FDT
Sbjct: 43 IATENEIFLIDTLE-DLDFSK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDT 100
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + SL+ LL + KE Q +DWR RPL + YA +D +L+ I
Sbjct: 101 QLAASFLGTQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIK 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++ KL+ + + L E+ K ++ ++ K I +Q Q
Sbjct: 161 YHLESKLNQTDYKQYFYE-ELLEIQKTEFNTVENIHNK----------IGNIQKFSEKTQ 209
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ A++ +WR+ +A+ + ++ N+ L IA + P
Sbjct: 210 KNAILVA--QWRESMAQQKNIPVRFIFDNKILYAIAHKNP 247
>gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665]
gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665]
Length = 416
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 12/231 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLVAVLEELLGVTLAKEHSAAD 158
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKDPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLK 265
A P T LR+ R ++ I+ +++A + A +++
Sbjct: 268 AAAQPRTVPALRQTSGFHGRAASREAPRWIAAIRAGVEDAERGDAPAAQIR 318
>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
Length = 392
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 27/227 (11%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
+D L+L +Q L +F+DP KV H A +D+ L R+ G +FDT A+ +L
Sbjct: 55 CIDPLRLDIQ---QLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLG 111
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E+ L+ + +K DW RPL E +RYA +D +L +++ + +L
Sbjct: 112 YGEQVGYANLVKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELD 171
Query: 128 SMPK------ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+ + E E P LYE + E S+ + G++ L ++
Sbjct: 172 THDRMHWLRPEMEALSNP-------------ALYEPD--PEQSWQRVSGVK--RLKPKER 214
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
V+ + WR+ A++ + +VL + L++IA++ P A LR L
Sbjct: 215 GVLKCVAAWRERTAQSSNRPRRWVLSDDLLLDIARRTPADAQGLREL 261
>gi|419839681|ref|ZP_14363087.1| ribonuclease D [Haemophilus haemolyticus HK386]
gi|386909259|gb|EIJ73935.1| ribonuclease D [Haemophilus haemolyticus HK386]
Length = 380
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ ++F +M DT +R L L ++ L L H + V
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQEFDQLPHSMIDTQIMARFLGLGTSAGLAKLAHQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLKYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|381397371|ref|ZP_09922783.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
gi|380775356|gb|EIC08648.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
Length = 398
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L+E D T ++H A +D+ L R+ + +FDT A+R+L ER L ++
Sbjct: 69 LQEAIGDITW--ILHAASQDLPSL-REENLEPPQIFDTELAARLLGHERVGLGAVVEDTL 125
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G+ K + ADW RPLP L YA D +L+ ++++++ +L K T+
Sbjct: 126 GITLAKAHSAADWSTRPLPQPWLEYAALDVLHLVDVFEVLRDELEEQGK---------TD 176
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+ + ++ R K E + + GL + LA+ L R+ AR D S
Sbjct: 177 IAAQEFETVRTRPVKP-PREEPWRRLSGLHTVR-GRRALAIARALWIAREEYAREQDTSP 234
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRLL----KSKHSYIERYMGPV 243
G ++P+R L+ + P T L R+ ++ S ++R+ +
Sbjct: 235 GRLVPDRALVAVVIADPKTKQDLARVKDFTGRASRSQLDRWWAAI 279
>gi|359790885|ref|ZP_09293762.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253146|gb|EHK56314.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
Length = 355
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
+VD L L + + P+ + + KV H A +DI + G+ +FDT A+ V
Sbjct: 52 LVDPLSLDIDLAPFF-ALMANEAVTKVFHAARQDIEIVFHLGGLLPHPVFDTQVAAMVCG 110
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ S + L+ G + +K + DWR RPL D+ L YA D +L+ +Y +K +L
Sbjct: 111 FGDSVSYDQLVQRITGAHLDKSSRFTDWRHRPLSDKQLEYALADVTHLIEVYQHLKTQL- 169
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
E +N L E + R+ Y+ ++++ L+ +LAVV +
Sbjct: 170 ----ERDNRAHWLNE--EMEILTSRETYDPH--PDDAWKR---LKMRLRKPVELAVVQAV 218
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
WR+ AR + G VL + + E+A+Q P AA L RL
Sbjct: 219 AAWREREARDRNVPRGRVLKDDAIYEVAQQQPRDAAALARL 259
>gi|408528598|emb|CCK26772.1| ribonuclease [Streptomyces davawensis JCM 4913]
Length = 382
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 22/222 (9%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
L EV D + V+H A +D+ L R+ G+ +FDT A R+ R L ++ +
Sbjct: 64 LGEVLAD--AEWVLHAATQDLPCL-REIGMIPSRIFDTELAGRLAGFPRVGLGPMVENVL 120
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G K + DW RPLP+ LRYA D L+ + D ++ +L K E
Sbjct: 121 GFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LE 171
Query: 143 VYKRSYDVCRQL----YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
++ +D KE S +H + +QL VV L E RD IA+
Sbjct: 172 WARQEFDAIASAPPPEPRKEPWRRTSGMHKVRRR------RQLGVVRELWETRDRIAQRR 225
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
D S G VL + ++E A LP L L H R +
Sbjct: 226 DVSPGKVLSDAAIVEAALGLPANVHALSALSGFGHRMGRRQL 267
>gi|441513674|ref|ZP_20995502.1| ribonuclease D [Gordonia amicalis NBRC 100051]
gi|441451620|dbj|GAC53463.1| ribonuclease D [Gordonia amicalis NBRC 100051]
Length = 424
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 15/245 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + + + P + V+H AD+D+ L R+ G ++DT A R+L
Sbjct: 80 FLLDPIADPGALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFECVELYDTELAGRLL 135
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L + +L ++ F G+ K + ADW RPLPDE L YA D L+ + D M L+
Sbjct: 136 GLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDEWLNYAALDVEVLVELRDAMDAALA 195
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ + V R R + + S +H +A+ LA V L
Sbjct: 196 ESGKDGWAREE-FAYVLSRPPAPPR----TDRWRKTSNIHTVK------SARALAAVREL 244
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
R+ +A D + G VLP+ ++ A P + ++L RL R G LS +
Sbjct: 245 WMAREELAERRDVAPGRVLPDTAIVNAATADPRSNSELTRLPIFGGPRQRRQAGIWLSAL 304
Query: 248 KNSMQ 252
+ + +
Sbjct: 305 QRARE 309
>gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665]
Length = 415
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ +FDT A+RV L R L +L GV KE+ AD
Sbjct: 100 ILHAASQDLPCLA-EQGLRPDRLFDTELAARVAGLPRVGLVAVLEELLGVTLAKEHSAAD 158
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W VRPLP+ ML YA D L+ + + + +L +D L + V +
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARL--------EADGKLAWAEQEFEHV--RT 208
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + G Q Q+ AV+ L E R+ +AR D + G ++P+R+++
Sbjct: 209 APPPAPKKDPWRGTSGSQTLRRPVQR-AVLKRLWEAREDLARHRDVAPGRLIPDRSIVAA 267
Query: 215 AKQLPTTAAKLR 226
A P T LR
Sbjct: 268 AAAQPRTVPALR 279
>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
Length = 377
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 18/210 (8%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L + D +K+ H +D+ L + +FDT A+ L ER + Y L+
Sbjct: 63 LAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLG-ERVQMSYDGLVKA 121
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--T 138
FCGV+ K DW RPL E + YA +D YL+ Y++M +L + S D
Sbjct: 122 FCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQRGRMSWALDEMR 181
Query: 139 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
PL + +D R+L K + S +QL V L WR+ A +
Sbjct: 182 PLADESHYRHD--RRLAYKRVKRIGS-----------CTRRQLGVARELAAWREGRAESH 228
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D +++ + L+ +AK+ P + A+LR++
Sbjct: 229 DIPRKWIMSDEVLLALAKRAPHSVAELRQV 258
>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
Length = 422
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ WL + G+ +FDT A+++L ER L L G+ KE+ AD
Sbjct: 110 ILHDATTDMPWLA-EIGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLEKEHSAAD 168
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D +L+ + + ++L K+ D Q
Sbjct: 169 WSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKD----------------DWAEQE 212
Query: 155 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+E L E + + H+ G G + + LA + L + R+ I A++ + VL N
Sbjct: 213 FEHLLYFEPPAPKPDPWRHVPG-SGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 271
Query: 209 RTLIEIAKQLP 219
LI +A LP
Sbjct: 272 PALIALAVALP 282
>gi|256832621|ref|YP_003161348.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
gi|256686152|gb|ACV09045.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
Length = 406
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
+ H A +D+ L RD G+ +FDT A+R+L L+R +L + HF GV K++ + D
Sbjct: 96 IFHAAIQDLGPL-RDQGLTPGTIFDTEVAARLLGLDRVNLAAVTAHFLGVTLEKQHSHQD 154
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT-PLTEVYKRSYDVCRQ 153
W RPLP L YA D L + S+T LTE K +
Sbjct: 155 WSTRPLPSSWLTYAALDVELL---------------GDLAISETDALTETRKLRWAHEEF 199
Query: 154 LY---EKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
Y ++ + + + G+Q + ++LAVV L R+ IAR+ D + +L +R
Sbjct: 200 AYIQAQRAIHRPDPWRRTSGIQRVT-DRRRLAVVQHLWNEREKIARSKDLAPSRILSDRG 258
Query: 211 LIEIAKQLPTTAAKL 225
+IE A LP T L
Sbjct: 259 IIEAAITLPRTVGAL 273
>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
Length = 422
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ WL + G+ +FDT A+++L ER L L G+ KE+ AD
Sbjct: 110 ILHDATTDMPWLA-EIGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLEKEHSAAD 168
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D +L+ + + ++L K+ D Q
Sbjct: 169 WSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKD----------------DWAEQE 212
Query: 155 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+E L E + + H+ G G + + LA + L + R+ I A++ + VL N
Sbjct: 213 FEHLLYFEPPAPKPDPWRHVPG-SGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 271
Query: 209 RTLIEIAKQLP 219
LI +A LP
Sbjct: 272 PALIALAVALP 282
>gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)]
gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)]
Length = 394
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 84 VLHAATQDLPCL-REIGMVPTRIFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 142
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 194 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQARDRIAQRRDVSPGKVLGDAAIVEA 251
Query: 215 AKQLPTTAAKLRRL 228
A LP A L L
Sbjct: 252 ALALPPNAHALAAL 265
>gi|385674396|ref|ZP_10048324.1| ribonuclease D [Amycolatopsis sp. ATCC 39116]
Length = 407
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 15/234 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+VD + L ++GP L++V ++ V+H A +D+ L + + ++FDT A R+
Sbjct: 73 VLVDPIALEGRLGP-LQDVLNG--EEWVLHAASQDLPCLA-ELDLVPGSLFDTELAGRLA 128
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER +L L+ G + K + ADW RPLP + L YA D L+ + + ++ +L
Sbjct: 129 GYERVALGTLVEKLLGYHLEKGHSAADWSKRPLPVDWLNYAALDVELLIPLREKLEAELD 188
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K + ++ ++ R + SE + G+ A+ LA V L
Sbjct: 189 AQGK---------LDWARQEFEAVRTAPQPPPRSE-PWRRTSGIHKVR-TARGLAAVRAL 237
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 241
E RD +AR D + VLP+ ++ P + A+L+ L RY G
Sbjct: 238 WEARDELARKRDRAPSRVLPDSAIVNAVLAEPKSVAELQALPVFGGRVQRRYTG 291
>gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064]
gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
Length = 428
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L RD G+ +FDT A R+ R L ++ G K + D
Sbjct: 118 ILHAATQDLPCL-RDIGMAPALLFDTELAGRLAGFPRVGLGAMVESVLGYALEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L+ K + +
Sbjct: 177 WSTRPLPEPWLRYAALDVELLIDLRDALEEELAEQGKLEWAR-----QEFAAIAAAPPPA 231
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
K+ S +H + +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 232 PRKDPWRRTSGMHKVRRR------RQMAVVRELWTARDAVAQRRDVSPGKVLSDSAIIEA 285
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A +P T L L H R +
Sbjct: 286 ALAVPPTVQALTALPGFGHRMGRRQL 311
>gi|348171326|ref|ZP_08878220.1| ribonuclease D [Saccharopolyspora spinosa NRRL 18395]
Length = 415
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 15/218 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+VD + L + P L + + V+H A +D+ L + + +FDT A R+
Sbjct: 79 VLVDPIALDGALDPLLPALAD---AEWVLHAASQDLPCLA-ELDLRPARLFDTELAGRLA 134
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER SL L+ G K + ADW RPLP + L YA D L + D M+ +L
Sbjct: 135 GFERVSLGALVERMLGYRLEKGHSAADWSRRPLPQDWLVYAALDVELLTALRDAMRDELE 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K + ++ R + G+ + +QLA V L
Sbjct: 195 RQGK---------LDWAHEEFEAVRT-AAPAPPRAEPWRRTSGIHRVR-SPRQLAAVRAL 243
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
E RD +AR D + G VLP+ ++++ A+ P T A L
Sbjct: 244 WETRDNVARDRDLAPGRVLPDSSIVQAAQANPKTEADL 281
>gi|419849744|ref|ZP_14372771.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 35B]
gi|419851666|ref|ZP_14374588.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 2-2B]
gi|386411097|gb|EIJ25853.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 35B]
gi|386413096|gb|EIJ27721.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 2-2B]
Length = 433
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 20/252 (7%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 229 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
+ ERY P+ ++K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRVVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 278 VLVLDTSSNLKI 289
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|403727735|ref|ZP_10947771.1| ribonuclease D [Gordonia rhizosphera NBRC 16068]
gi|403203798|dbj|GAB92102.1| ribonuclease D [Gordonia rhizosphera NBRC 16068]
Length = 426
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + E K P + V+H AD+D+ L R+ G +FDT A R+L
Sbjct: 86 FLLDPIAEPEGLAPVI-EALKGP--EWVLHAADQDLPCL-RELGFVCDTLFDTELAGRLL 141
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ +L ++ F G K + ADW RPLPDE L YA D L+ + + L+
Sbjct: 142 GAGKVNLAAMVADFLGFGLVKGHGAADWSRRPLPDEWLNYAALDVEVLVDLRHAVHAALT 201
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ + +Y + R +I+ ++ +++ LA V L
Sbjct: 202 EAGKDEWARQ-------EFAYILDRPPTPPRPDRWRKTSNIHAVK----SSRALAAVREL 250
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R+ +A+ D + G +LP+ ++ A P +A +L RL
Sbjct: 251 WTAREELAQRRDVAPGRILPDSAIVTAATANPKSADELTRL 291
>gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977]
gi|420910597|ref|ZP_15373909.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|420917049|ref|ZP_15380353.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|420922214|ref|ZP_15385511.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|420927876|ref|ZP_15391158.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|420967485|ref|ZP_15430689.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
gi|420978216|ref|ZP_15441394.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|420983601|ref|ZP_15446768.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|421007806|ref|ZP_15470917.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|421013569|ref|ZP_15476650.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|421018518|ref|ZP_15481576.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|421025191|ref|ZP_15488235.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|421029834|ref|ZP_15492866.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|421035103|ref|ZP_15498123.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease)
[Mycobacterium abscessus]
gi|392112591|gb|EIU38360.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|392121189|gb|EIU46955.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|392132050|gb|EIU57796.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|392135109|gb|EIU60850.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|392166490|gb|EIU92175.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|392168597|gb|EIU94275.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|392199259|gb|EIV24869.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|392201917|gb|EIV27515.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|392208393|gb|EIV33967.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|392211988|gb|EIV37554.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|392224586|gb|EIV50106.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|392225835|gb|EIV51350.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|392249992|gb|EIV75466.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
Length = 400
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D + +GP + + D + ++H AD+D+ L + + +++DT A R+
Sbjct: 73 VLLDPTNVPGSLGPIVDALGAD---EWILHAADQDLPCLA-ELAMKPPSLYDTELAGRLA 128
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E+ +L ++H G+ K + ADW RPLPD+ L YA D L+ + D + L+
Sbjct: 129 GFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLA 188
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K +E + + R ++ S +H G QLA V L
Sbjct: 189 EQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG------QLAAVREL 237
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 238 WLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
Length = 409
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
T+ +D L + + P L + +D + KV H ++D+ + G ++DT A
Sbjct: 75 TKAVAIDPLAKNLNLEP-LWSLMRDESIIKVFHAGNQDMEIFLNEMGGLPSPVYDTQIAG 133
Query: 65 RVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
V ++ + L+ G N +K + DW RPL D + YA +D YL IY IM
Sbjct: 134 LVCGHGDQIGYDSLVKSILGKNVDKTSRFTDWSKRPLTDRQISYALDDVIYLAQIYPIML 193
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
K++ SEN L E +K+ D + + EN++ I + L A L
Sbjct: 194 DKIA-----SENRTNWLDEEFKKFSDPATYVTK----PENAWKRI---KIRHLKAPALMR 241
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 243
+ L WR++ A+ + V+ + TLI++A P T + ++ +++ PV
Sbjct: 242 LMRLAAWREIEAQNRNVPRNRVIRDETLIDLAGTAPNTINEFSKIRNFPGGTDGKFVKPV 301
Query: 244 LSIIKN 249
L +I++
Sbjct: 302 LKVIQD 307
>gi|418421090|ref|ZP_12994266.1| hypothetical protein MBOL_28120 [Mycobacterium abscessus subsp.
bolletii BD]
gi|363997557|gb|EHM18768.1| hypothetical protein MBOL_28120 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 400
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D + +GP + + D + ++H AD+D+ L + + +++DT A R+
Sbjct: 73 VLLDPTNVPGSLGPIVDALGAD---EWILHAADQDLPCLA-ELAMKPPSLYDTELAGRLA 128
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E+ +L ++H G+ K + ADW RPLPD+ L YA D L+ + D + L+
Sbjct: 129 GFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLA 188
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K +E + + R ++ S +H G QLA V L
Sbjct: 189 KQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG------QLAAVREL 237
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 238 WLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|365870911|ref|ZP_09410452.1| hypothetical protein MMAS_28540 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679858|ref|YP_006521393.1| ribonuclease D [Mycobacterium massiliense str. GO 06]
gi|414584634|ref|ZP_11441774.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|418247873|ref|ZP_12874259.1| 3'-5' exonuclease [Mycobacterium abscessus 47J26]
gi|420878742|ref|ZP_15342109.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|420885673|ref|ZP_15349033.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|420889577|ref|ZP_15352925.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|420896274|ref|ZP_15359613.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|420899545|ref|ZP_15362877.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|420906083|ref|ZP_15369401.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|420932091|ref|ZP_15395366.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|420938975|ref|ZP_15402244.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|420942348|ref|ZP_15405605.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|420946622|ref|ZP_15409872.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|420952608|ref|ZP_15415852.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|420956777|ref|ZP_15420014.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|420961845|ref|ZP_15425070.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|420972953|ref|ZP_15436146.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|420992736|ref|ZP_15455883.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|420998587|ref|ZP_15461724.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|421003024|ref|ZP_15466148.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|421049988|ref|ZP_15512982.1| ribonuclease III [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|353452366|gb|EHC00760.1| 3'-5' exonuclease [Mycobacterium abscessus 47J26]
gi|363994714|gb|EHM15932.1| hypothetical protein MMAS_28540 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392081436|gb|EIU07262.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|392083651|gb|EIU09476.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|392087325|gb|EIU13147.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|392095586|gb|EIU21381.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|392100892|gb|EIU26683.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|392103987|gb|EIU29773.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|392119786|gb|EIU45554.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|392136850|gb|EIU62587.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|392144490|gb|EIU70215.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|392149775|gb|EIU75489.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|392153652|gb|EIU79358.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|392157920|gb|EIU83617.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|392165845|gb|EIU91531.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|392185520|gb|EIV11169.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|392186399|gb|EIV12046.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|392194482|gb|EIV20102.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|392238591|gb|EIV64084.1| ribonuclease III [Mycobacterium massiliense CCUG 48898]
gi|392249310|gb|EIV74785.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|392253676|gb|EIV79144.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|395458123|gb|AFN63786.1| Ribonuclease D [Mycobacterium massiliense str. GO 06]
Length = 400
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D + +GP + + D + ++H AD+D+ L + + +++DT A R+
Sbjct: 73 VLLDPTNVPGSLGPIVEALGAD---EWILHAADQDLPCLA-ELDMKPPSLYDTELAGRLA 128
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E+ +L ++H G+ K + ADW RPLPD+ L YA D L+ + D + L+
Sbjct: 129 GFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLA 188
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K +E + + R ++ S +H G QLA V L
Sbjct: 189 EQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG------QLAAVREL 237
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 238 WLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|350563555|ref|ZP_08932376.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
gi|349778690|gb|EGZ33041.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
Length = 390
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 16/257 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D L ++ + L ++F + KV H A +D+ L + +FDT AS L
Sbjct: 54 YIIDPLSIKNLIP--LWQLFSNTNITKVFHAARQDLEILYQQAECMPLPIFDTQIASVFL 111
Query: 68 KL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
L ++ S L+ CG N NK+ W RPL DE L YA D +L Y I+ L
Sbjct: 112 GLGDQASYARLIEKLCGENINKDQARTQWLDRPLLDEQLEYAAADVWHLAQAYPILLKSL 171
Query: 127 SSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAG 186
+ +++ +D + D LY E ++L + + L+ +QL ++
Sbjct: 172 TPTQRQAIQAD------FNNLTDPS--LYRTE--PAQAWLRMKP--SSSLSNKQLGLLKH 219
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSI 246
L WR+ A ++ +++ + LI++AK+ L +L + I ++ ++ +
Sbjct: 220 LAAWREEQAVTLNQPRKWIVNDEALIQLAKRPVREVQDLHKLNQFDGETIRQHGESLIRV 279
Query: 247 IKNSMQNAANFEVIAQK 263
+ +MQ+A N+ V AQK
Sbjct: 280 LDKAMQDAENWPV-AQK 295
>gi|410624162|ref|ZP_11334969.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156244|dbj|GAC30343.1| ribonuclease D [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 388
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 20/236 (8%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
E+ +P+ KV+H D+ L + + +FD+ A+ +L + + +L Y L+
Sbjct: 68 EILVNPSIIKVLHSCSEDLDALWFNLKVIPAPLFDSQFAANLLDMGQ-TLGYANLVEQML 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTPLT 141
V+ +K DW RPL E L+YA D YLL +Y + K+ + + E +++
Sbjct: 127 NVHVDKGESRTDWIARPLSVEQLKYAAADVFYLLPVYRQLAAKIQEIGQTEWVFAESDFL 186
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ KR+ E+ S+ +YL I G ++Q + + WR A+ D +
Sbjct: 187 SLKKRA----------EVPSDLAYLSIKNNWKIGAQSRQ--ALKEIASWRLQQAQKRDMA 234
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKLRRL--LKSKHSYIERYMGPVLSIIKNSMQNAA 255
+VL + ++E+A +LP AKL +L + K + I + +L +++N++ AA
Sbjct: 235 INFVLREQGMLEVAMKLPENKAKLFQLESITPKEARI--HTDTLLELVQNALNTAA 288
>gi|419709773|ref|ZP_14237241.1| 3'-5' exonuclease [Mycobacterium abscessus M93]
gi|419716748|ref|ZP_14244143.1| 3'-5' exonuclease [Mycobacterium abscessus M94]
gi|420864384|ref|ZP_15327774.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|420869175|ref|ZP_15332557.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|420873619|ref|ZP_15336996.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|420989830|ref|ZP_15452986.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|421040139|ref|ZP_15503148.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|421043974|ref|ZP_15506975.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
gi|382940309|gb|EIC64633.1| 3'-5' exonuclease [Mycobacterium abscessus M94]
gi|382943654|gb|EIC67968.1| 3'-5' exonuclease [Mycobacterium abscessus M93]
gi|392068645|gb|EIT94492.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|392071359|gb|EIT97205.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|392072647|gb|EIT98488.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|392184109|gb|EIV09760.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|392225231|gb|EIV50750.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|392237826|gb|EIV63320.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
Length = 400
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D + +GP + + D + ++H AD+D+ L + + +++DT A R+
Sbjct: 73 VLLDPTNVPGSLGPIVDALGAD---EWILHAADQDLPCLA-ELAMKPPSLYDTELAGRLA 128
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E+ +L ++H G+ K + ADW RPLPD+ L YA D L+ + D + L+
Sbjct: 129 GFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLA 188
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K +E + + R ++ S +H G QLA V L
Sbjct: 189 EQGK-TEWARQEFEHLAHTPVPATR----RDNWRRTSGIHKVRKPG------QLAAVREL 237
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
RD +ARA D + G LP+ ++E A P T A+L
Sbjct: 238 WLSRDELARARDVAPGRTLPDSAIVEAALADPKTRAEL 275
>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
Length = 403
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G +FDT A+R+L ER L ++ G+ K + AD
Sbjct: 92 VLHAATQDLPCLA-ELGFRPRRLFDTELAARLLGYERVGLATMVEVVLGLRLEKGHSAAD 150
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-----------ESENSDTPLTEV 143
W RPLP++ LRYA D L+ + D + +L K S + P ++
Sbjct: 151 WSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLEWALEEFAAILSAPASPPKSDP 210
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++R+ + R + L+G LA+V L RD IAR D + G
Sbjct: 211 WRRTSGIHR---------------VRSLRG-------LAIVRELWTLRDEIAREADLAPG 248
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
VLP+ +++ A + P T L
Sbjct: 249 RVLPDSAIVQAALEQPRTTKAL 270
>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
Length = 397
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 24/191 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ WL + G+ +FDT A+++L ER L L G+ KE+ AD
Sbjct: 85 ILHDATTDMPWLA-EIGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLEKEHSAAD 143
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D +L+ + + ++L K+ D Q
Sbjct: 144 WSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKD----------------DWAEQE 187
Query: 155 YEKELLSE------NSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+E L E + + H+ G G + + LA + L + R+ I A++ + VL N
Sbjct: 188 FEHLLYFEPPAPKPDPWRHVPG-SGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 246
Query: 209 RTLIEIAKQLP 219
LI +A LP
Sbjct: 247 PALIALAVALP 257
>gi|363420406|ref|ZP_09308498.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
gi|359735648|gb|EHK84605.1| ribonuclease D [Rhodococcus pyridinivorans AK37]
Length = 417
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D + R + P L EV D + V+H AD+D+ L + G+ ++DT A R+
Sbjct: 80 VLLDPIPTRDDLAP-LTEVIND--LEWVLHSADQDLPGLA-ELGLRPAKLYDTELAGRLA 135
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
R L ++ G+ K + ADW RPLPD L YA D L+ + D M +L
Sbjct: 136 GFPRVGLAAIVAETLGLELRKGHGAADWSTRPLPDSWLNYAALDVEPLVELRDAMAREL- 194
Query: 128 SMPKESENSDTPLTEVYKRSYDVCR----QLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
E +N TE + ++ R + + S +H A + ++LA+
Sbjct: 195 ----ERQNK----TEWAAQEFEHIRLAGPPAPKPDRWRRTSKIH------AIKDRRRLAI 240
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
V L RD IA D + G +LP+ +I A+ PT+ +L+ L
Sbjct: 241 VRELWTTRDEIAARRDIAPGRILPDSAIIAAAEANPTSVEQLQEL 285
>gi|332670632|ref|YP_004453640.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
gi|332339670|gb|AEE46253.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
Length = 424
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L G+ +FDT +R+L +ER L ++ G+ KE+ D
Sbjct: 111 VLHAASQDLPGLTEQ-GMRPTRIFDTELGARLLGMERVGLAAVVADALGLGLAKEHSAVD 169
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E LRYA D L+ + +++ +L+ K E + ++ R
Sbjct: 170 WSTRPLPQEWLRYAALDVEVLVPLREVLAERLAVAGK---------AEWAAQEFEAVRTA 220
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + + GL +A++LAVV L RD AR D S G VLP+ ++
Sbjct: 221 PTPP-PRVDPWRRVSGLHQVK-DARRLAVVRELWLTRDQNARQRDISPGRVLPDAAIVAA 278
Query: 215 AKQLPTTAAKLRRL 228
A+ LP + +L L
Sbjct: 279 AQALPRSVPQLTAL 292
>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
Length = 390
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
D ++D L + + P+L ++ D ++ KV H A +D+ + G +FD+ A+
Sbjct: 58 DCLIDPLSPNIDLAPFL-DLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIFDSQVAAMA 116
Query: 67 LKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
L + S E L+ +K Q DW+ RPL ++ L YAR D +L + Y +K K
Sbjct: 117 CGLGDSVSYENLVSQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAK 176
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
L + + + V +YD +N++ ++ LA++A
Sbjct: 177 LEKLGRMGWIEEETEILVNPDTYDTN---------PKNAWKR---MKIRKPRKDYLALIA 224
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL-------LKSKH 233
+ EWR+ +A+ D+ +L + + EIA+Q P + RL KSKH
Sbjct: 225 SVSEWREKLAQELDKPRSRILKDDAVQEIAQQKPIDVNAMERLRAVPKGFAKSKH 279
>gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314]
gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 413
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 32 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
++ ++H A D+ WL ++ +FDT A R+ E +L ++ ++ K
Sbjct: 93 QEWIIHAAATDLPSLAWLD----LHPGTLFDTELAGRLAGFELVNLAAMVEQIFDLHLLK 148
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDTPLTE 142
+ DW RPLP+E L YA D LL + D+M + KL +E E+ T +
Sbjct: 149 GHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRTQFAD 208
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDE 200
V +E L ++G G +QL V + RD IA A D
Sbjct: 209 V-----------------TEAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDL 251
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ G VL N+ ++E A+ LP T L R+
Sbjct: 252 AAGKVLSNKVIVETARTLPRTFGDLARV 279
>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
gi|210159428|gb|EEA90399.1| ribonuclease D [Collinsella stercoris DSM 13279]
Length = 377
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 20/225 (8%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E V+D L + + P L E+ D KV H +D+ L G+ +FDT A+
Sbjct: 48 ECVVIDPLTID-DLSP-LAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAG 105
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L ER Y L+H FCGV+ K DW RPL + + YA +D YL+ Y +++
Sbjct: 106 FLG-ERAQCSYHNLVHSFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIE 164
Query: 124 IKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
KL S+ + + D PL + D +++ + + +QL
Sbjct: 165 SKLHSLGRTAWVRDEIRPLADPAHYRSD-----------PRSAFKRVKRINAC--TRRQL 211
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
AV L WR+ A D +V+ + L+ + +++P T R
Sbjct: 212 AVARELAAWREHRAEDRDIPRKWVMSDEVLVALCRRVPKTIEDFR 256
>gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314]
gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314]
Length = 407
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 32 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
++ ++H A D+ WL ++ +FDT A R+ E +L ++ ++ K
Sbjct: 87 QEWIIHAAATDLPSLAWLD----LHPGTLFDTELAGRLAGFELVNLAAMVEQIFDLHLLK 142
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM------KIKLSSMPKESENSDTPLTE 142
+ DW RPLP+E L YA D LL + D+M + KL +E E+ T +
Sbjct: 143 GHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRTQFAD 202
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDE 200
V +E L ++G G +QL V + RD IA A D
Sbjct: 203 V-----------------TEAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDL 245
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ G VL N+ ++E A+ LP T L R+
Sbjct: 246 AAGKVLSNKVIVETARTLPRTFGDLARV 273
>gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 364
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 16/220 (7%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
++ E F++DTL+ + L+++F+D +K++H A DI ++R F + N+FDT
Sbjct: 43 IATENEIFLIDTLE-DLDFSK-LKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDT 100
Query: 61 GQASRVLKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ L + SL+ LL + KE Q +DWR RPL + YA +D +L+ I
Sbjct: 101 QLAASFLGTQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQFDYALKDVEHLIEIK 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
++ KL+ + + L ++ K ++ ++ K I +Q Q
Sbjct: 161 YHLESKLNQTDYKQYFYE-ELLDIQKTEFNTVENIHNK----------IGNIQKFSEKTQ 209
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ A++ +WR+ +A+ + ++ N+ L IA + P
Sbjct: 210 KNAILVA--QWRESMAQQKNIPVRFIFDNKILYAIAHKNP 247
>gi|377575254|ref|ZP_09804248.1| ribonuclease D [Mobilicoccus pelagius NBRC 104925]
gi|377535831|dbj|GAB49413.1| ribonuclease D [Mobilicoccus pelagius NBRC 104925]
Length = 540
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L R+ G+ +FDT +R+ L R L ++ H+ G + KE+ D
Sbjct: 230 ILHAATQDLGCL-REVGLSPDALFDTELGARLAGLPRVGLAAVVEHYLGFSLAKEHSAVD 288
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP++ L YA D L + + M L++ K E ++ ++
Sbjct: 289 WSTRPLPEDWLIYAALDVECLAEVREAMIEDLTAQGK---------IEWARQEFEALTS- 338
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + + + + G++ + A++ L RD +AR D + G + P+ + +
Sbjct: 339 FTGHPVRTDPWRRVSGMRRL-RTPRAAAILRELWYVRDDLARDRDTAPGRIAPDAVIGAL 397
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERY 239
A PTT+A++ S H + R+
Sbjct: 398 AGAAPTTSAEV--TAASSHRAVRRH 420
>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
gi|421515925|ref|ZP_15962611.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
gi|404349653|gb|EJZ75990.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
Length = 380
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 60 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 117
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 118 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 176
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 177 TRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 224
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 225 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 260
>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
Length = 374
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 54 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 111
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 112 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 170
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 171 TRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 218
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 219 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 260
>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
Length = 384
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 89/203 (43%), Gaps = 20/203 (9%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
LR + DP+ KV H D+ R G+ +DT Q + SL Y L+H
Sbjct: 78 LRNLMVDPSVMKVFHACSEDLDVFDRLLGVLPTPFYDT-QIGEAYASAQWSLSYVKLIHE 136
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 140
+ + K+ +DW RPL D RYA D YL +Y + +L E++N +
Sbjct: 137 YLQIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLAKVYPMQIARL-----EAKNMLGWV 191
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHI---YGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
E D + Y+ E ++ I + L AGL +L + WRD AR
Sbjct: 192 ME----DCDSLKWQYQMNSDPEQNWDGIKTAWRLTPAGLTLLRLLFI-----WRDGQARK 242
Query: 198 DDESTGYVLPNRTLIEIAKQLPT 220
+D G +L +RTL +AK LPT
Sbjct: 243 EDVPKGQILKDRTLWSLAKTLPT 265
>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
gi|416873541|ref|ZP_11917580.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|421175630|ref|ZP_15633306.1| ribonuclease D [Pseudomonas aeruginosa CI27]
gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|334844716|gb|EGM23287.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|404532027|gb|EKA41953.1| ribonuclease D [Pseudomonas aeruginosa CI27]
Length = 374
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 54 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 111
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 112 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 170
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 171 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 218
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 219 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 254
>gi|451336100|ref|ZP_21906661.1| Ribonuclease D [Amycolatopsis azurea DSM 43854]
gi|449421292|gb|EMD26724.1| Ribonuclease D [Amycolatopsis azurea DSM 43854]
Length = 422
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 23/225 (10%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + L Q+ P L EV D + V+H A +D+ L + ++ ++FDT A R+
Sbjct: 86 FLIDPIPLEGQLAP-LAEVLND--AEWVLHAASQDLPCLA-ELDLHPKSLFDTELAGRLA 141
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER +L L+ G K + ADW RPLP + L YA D L+ + + ++ L+
Sbjct: 142 GYERVALGTLVELLLGYQLEKGHSAADWSKRPLPVDWLNYAALDVELLIELREKLEADLA 201
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEK----ELLSENSYLHIYGLQGAGLNAQQLAV 183
+ K E ++ ++ R E S +H +A+ LA
Sbjct: 202 AQGK---------LEWAQQEFEAVRTAPPPAPRVEPWRRTSGVHKIR------SARGLAA 246
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
V L + RD +AR D + +LP+ +I P T +L+ L
Sbjct: 247 VRELWQARDELARKRDRAPSRILPDSAIINAVTADPKTVEQLQAL 291
>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
Length = 374
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHF 81
L ++ K+ + KV+H D+ Q G M DT + L ++ L+ +
Sbjct: 66 LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAKLVSDY 125
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
GV+ +K DW RPL D+ L YA D HYLL +++ ++ +L+ E L
Sbjct: 126 LGVDLDKGESRTDWMARPLSDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAYQESLL 185
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
V KR EK+ E +YL I LN +QLA++ +WR AR D +
Sbjct: 186 AVKKR---------EKQPDPEKAYLDIKN--AWQLNGKQLAILKMAAQWRLEEARKRDLA 234
Query: 202 TGYVLPNRTLIEIAK 216
+V+ L ++A+
Sbjct: 235 VNFVVQELNLWKLAR 249
>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
Length = 383
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 28/228 (12%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
++D L + + P+ R + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLSPDINLAPFFR-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+L+ EN L E DV R+ Y+ E+++ L+ Q+
Sbjct: 166 SAELA-----RENRAHWLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQE 211
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
LA+V + WR+ AR D G VL + + E+A+Q P AA L +L
Sbjct: 212 LAIVQAVAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAALAKL 259
>gi|418051050|ref|ZP_12689135.1| 3'-5' exonuclease [Mycobacterium rhodesiae JS60]
gi|353184707|gb|EHB50231.1| 3'-5' exonuclease [Mycobacterium rhodesiae JS60]
Length = 425
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ ++DT A R+ ER +L ++ G+ K + AD
Sbjct: 113 ILHAADQDLPCLA-EVGMRPPRLYDTELAGRLAGFERVNLAAMVQRLLGLGLAKGHGAAD 171
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD L YA D L+ + + ++ + ++ +D E Y C
Sbjct: 172 WSKRPLPDAWLNYAALDVEVLIALQE----AIADVLRQQHKTDWAAEEF---EYLRC--- 221
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E + + G+ N Q LA V L RD IAR D + G +LP+ +I
Sbjct: 222 AEATPTRRDRWRKTSGIHKVR-NRQALAAVRELWTVRDQIARRRDIAPGRILPDSAIIAA 280
Query: 215 AKQLPTTAAKLRRL 228
A P T L +L
Sbjct: 281 AVADPKTVEDLTKL 294
>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
Length = 374
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 54 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 111
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 112 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 170
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 171 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 218
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 219 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 260
>gi|418583147|ref|ZP_13147217.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
gi|375047367|gb|EHS39913.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
Length = 376
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 56 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 113
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 114 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 172
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 173 TRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 220
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 221 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 262
>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|355645431|ref|ZP_09054144.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|386065119|ref|YP_005980423.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|421155212|ref|ZP_15614693.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|421169151|ref|ZP_15627193.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|348033678|dbj|BAK89038.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|354828894|gb|EHF12994.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|404520842|gb|EKA31492.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|404527609|gb|EKA37756.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
Length = 374
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 54 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 111
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 112 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 170
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 171 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 218
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 219 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 260
>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|386059670|ref|YP_005976192.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|421181719|ref|ZP_15639210.1| ribonuclease D [Pseudomonas aeruginosa E2]
gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|347305976|gb|AEO76090.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|404543287|gb|EKA52574.1| ribonuclease D [Pseudomonas aeruginosa E2]
Length = 374
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 54 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 111
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 112 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 170
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 171 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 218
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 219 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 260
>gi|345850282|ref|ZP_08803281.1| ribonuclease D [Streptomyces zinciresistens K42]
gi|345638219|gb|EGX59727.1| ribonuclease D [Streptomyces zinciresistens K42]
Length = 385
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMAPTRLFDTELAGRLAGFPRVGLGAMVESVLGFVLEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 133 WSTRPLPEPWLRYATLDVELLVDLRDALEKELDRQGK---------LEWAHQEFDAIASA 183
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 184 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVEA 241
Query: 215 AKQLPTTAAKL 225
A LP T L
Sbjct: 242 ALALPATVQAL 252
>gi|374608159|ref|ZP_09680958.1| 3'-5' exonuclease [Mycobacterium tusciae JS617]
gi|373553691|gb|EHP80278.1| 3'-5' exonuclease [Mycobacterium tusciae JS617]
Length = 439
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ ++ +L ++ G+ K +
Sbjct: 106 TDEWVLHAADQDLPCLA-EIGMRPTTLYDTELAGRLAGYDKVNLATMVQKLLGLQLTKGH 164
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLP + L YA D LL + + L E +N TE + ++
Sbjct: 165 GAADWSQRPLPHDWLNYAALDVEVLLDLRHAIAAVL-----EEQNK----TEWAAQEFEH 215
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R YE + + G+ +A+ LA V L RD IA+ D + G +LP+
Sbjct: 216 LRA-YEAMPTRRDRWRRTSGIHKIR-DARALAAVRELWTTRDNIAQRRDIAPGRILPDAA 273
Query: 211 LIEIAKQLPTTAAKLRRL 228
++ A P T KL L
Sbjct: 274 IVNAATVSPDTVEKLTAL 291
>gi|416856557|ref|ZP_11912131.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|420140701|ref|ZP_14648441.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|421161990|ref|ZP_15620882.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|424940506|ref|ZP_18356269.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|451988440|ref|ZP_21936569.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
gi|334841819|gb|EGM20440.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|346056952|dbj|GAA16835.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|403246543|gb|EJY60259.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|404537329|gb|EKA46933.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|451753938|emb|CCQ89092.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
Length = 374
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 54 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 111
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 112 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 170
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 171 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 218
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 219 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 260
>gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
Length = 394
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ ++FDT A R+ L R L ++ G+ K + AD
Sbjct: 87 VLHAASQDLPCLA-EVGLAPTSLFDTELAGRLAGLPRVGLGPMVEQLLGLALEKGHGAAD 145
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP++ L YA D L+ + D++ L+ K +E + ++ R
Sbjct: 146 WSRRPLPEDWLVYAALDVEVLIELRDLLAGMLAEQGK---------SEFAAQEFEAVRTA 196
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ G+ + LAVV L E RD +A D + G VLP+ +++
Sbjct: 197 AAPAP-RAEPWRRTSGIHKV-RKPRALAVVRALWEARDKLAAERDIAPGRVLPDAAIVDA 254
Query: 215 AKQLPTTAAKL-----------RRLLKSKHSYIER 238
A P T L RRL + +ER
Sbjct: 255 AVNAPATPGALAAMPVFRGRSQRRLTSYWFAALER 289
>gi|118379202|ref|XP_001022768.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304535|gb|EAS02523.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 645
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Query: 17 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL-KLERNSLE 75
VQ LRE ++ K+ DIVWLQRD+ I + N FD A+ L K E SL
Sbjct: 31 VQTKEQLRECIQEI--KQFNKIGQTDIVWLQRDYDILISNYFDIQTAAIFLNKDESWSLT 88
Query: 76 YLLHHFCGVNA----NKEYQNADWRVRPLPDEMLRYAREDTHYLLYI-YDIMKIKLSSMP 130
YLL +C K+ Q ++W RPL +E L YA D+H+L+ I Y++ L M
Sbjct: 89 YLLQKYCDYTLEKKEKKQLQLSEWSDRPLSEEQLNYAALDSHFLIKIRYEL----LHEMI 144
Query: 131 KESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQ--------GAGLNA---- 178
K + T L +YK ++ YEK+ E Y + Q GAGL +
Sbjct: 145 KRLDFQRT-LELLYKMQKATSKK-YEKKPFDELFYFQAFEKQSKIQVNSIGAGLKSTTEW 202
Query: 179 QQLAVV-AGLCEWRDVIARADDESTGYVLPNRTLIEIA 215
+ L ++ L E R+ + + VL +L++IA
Sbjct: 203 KILNIIFLELAELRESYSEQQNRYIQSVLTEESLLQIA 240
>gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037]
gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037]
Length = 398
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V H A +D+ L R+ G+ +FDT +R+L ER L ++ G+ K + AD
Sbjct: 79 VFHAASQDLPSL-RERGLEPPRIFDTELGARLLGHERVGLGAVVEQTLGITLAKAHSAAD 137
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D +L+ + D++ +L K TE ++ + +
Sbjct: 138 WSTRPLPASWLEYAALDVEHLIDVRDVLVAELEEQQK---------TEFARQEFQAVLER 188
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
K E+ + + GL + LAV L + R+ AR D + G ++P+R LI
Sbjct: 189 LPKP-PREDPWRRMSGLHTVR-GRRALAVARALWQAREEYAREQDVAPGRLVPDRALI 244
>gi|418594535|ref|ZP_13158323.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
gi|375043331|gb|EHS35959.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
Length = 393
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 73 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 130
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 131 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 189
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 190 TRLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 237
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 238 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|392985222|ref|YP_006483809.1| ribonuclease D [Pseudomonas aeruginosa DK2]
gi|419751377|ref|ZP_14277789.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|384402151|gb|EIE48502.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|392320727|gb|AFM66107.1| ribonuclease D [Pseudomonas aeruginosa DK2]
Length = 376
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 56 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 113
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 114 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 172
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 173 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 220
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ LC WR+ AR + +VL RTL +A+ LP L
Sbjct: 221 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 262
>gi|134098409|ref|YP_001104070.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora
erythraea NRRL 2338]
Length = 419
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + + +FDT A R+ +R SL L+ G K + AD
Sbjct: 105 VLHAASQDLPCLA-ELDLRPARLFDTELAGRLAGFDRVSLGALVERMLGYRLEKGHSAAD 163
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D L+ + + M +L E ++ E ++
Sbjct: 164 WSRRPLPADWLAYAALDVELLVALREAMHAEL-----ERQDKLEWAWEEFEAVRAAPPAP 218
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E S +H + +QLA V L E RD +AR D + G +LP+ ++++
Sbjct: 219 PRAEPWRRTSGIHRVR------SPRQLAAVRALWEARDAVARERDIAPGRILPDSSIVQA 272
Query: 215 AKQLPTTAAKLRRL 228
A+ P T A+L L
Sbjct: 273 AQANPKTEAELTAL 286
>gi|419847060|ref|ZP_14370262.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 1-6B]
gi|419854794|ref|ZP_14377570.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 44B]
gi|386412369|gb|EIJ27041.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 1-6B]
gi|386417071|gb|EIJ31562.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum 44B]
Length = 433
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 20/252 (7%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 229 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
+ ERY P+ +K+ + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKSKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 278 VLVLDTSSNLKI 289
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|72162300|ref|YP_289957.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
gi|71916032|gb|AAZ55934.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
Length = 420
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 14/225 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFC 82
LR+ D + V+H A +D+ L + + +FDT A R+L +R L ++
Sbjct: 99 LRDAVGD--AEMVLHAAHQDLPCLT-EVHLRPRRLFDTELAGRLLGYQRVGLGAMVERVL 155
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
GV KE+ DW RPLP++ LRYA D L+ + D + E+E ++T E
Sbjct: 156 GVRLAKEHAAVDWSTRPLPEDWLRYAALDVEVLIELRDAL---------EAELAETGKLE 206
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
++ + KE + + G+ + + L VV L RD IAR D S
Sbjct: 207 WARQEFAAVLAAPPKEP-RPDPWRRTSGIHRVR-SQRGLGVVRELWLERDRIARERDLSP 264
Query: 203 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
G VL + ++E A +P T +L + RY+ L I
Sbjct: 265 GRVLQDSAIVEAALAMPRTPQELTAIKTFTVRLARRYVPVWLKAI 309
>gi|453046792|gb|EME94507.1| ribonuclease D [Pseudomonas aeruginosa PA21_ST175]
Length = 393
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
+++++D L +Q E+ +D KV+H D+ R G +FDT A+
Sbjct: 73 QEWLIDPLL--IQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAA 130
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 131 YLGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALD 189
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
+LS E L + + ++CR+ +E E G L QQLAV
Sbjct: 190 ARLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAV 237
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 238 LRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 273
>gi|343924647|ref|ZP_08764191.1| ribonuclease D [Gordonia alkanivorans NBRC 16433]
gi|343765447|dbj|GAA11117.1| ribonuclease D [Gordonia alkanivorans NBRC 16433]
Length = 428
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 15/243 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + + + P + V+H AD+D+ L R+ G ++DT A R+L
Sbjct: 85 FLLDPIADPEALAPVI-DALRGP--EWVLHAADQDLPCL-RELGFECVELYDTELAGRLL 140
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L + +L ++ F G+ K + ADW RPLPD+ L YA D L+ + D M L+
Sbjct: 141 GLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAMDAALA 200
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K+ + V R R + + S +H +A+ LA V L
Sbjct: 201 ESGKDGWAREE-FAYVLSRPPAPPR----TDRWRKTSNIHTVK------SARALAAVREL 249
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
R+ +A D + G VLP+ ++ A P + ++L RL R G LS +
Sbjct: 250 WTAREELAERRDVAPGRVLPDTAIVNAATVDPKSNSELTRLPVFGGPRQRRQAGIWLSAL 309
Query: 248 KNS 250
+ +
Sbjct: 310 QRA 312
>gi|455644936|gb|EMF24027.1| ribonuclease D [Streptomyces gancidicus BKS 13-15]
Length = 388
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVENVLGFLLEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K + + +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LDWAWQEFDAIASA 183
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV L + RD IAR D S G VLP+ ++E
Sbjct: 184 PPPE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIARRRDVSPGKVLPDAAIVEA 241
Query: 215 AKQLPT 220
A +P
Sbjct: 242 ALAMPA 247
>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
Length = 373
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHF 81
L ++ K+ + KV+H D+ Q G M DT + L ++ L+ +
Sbjct: 66 LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAKLVSDY 125
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
G+ +K DW RPL D+ L YA D HYLL +++ ++ +LS E
Sbjct: 126 LGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQESAL 185
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
V KR EK+ +E +YL I LN +QLA++ +WR AR D +
Sbjct: 186 AVKKR---------EKQPDAEKAYLDIKN--AWQLNPKQLAILKMAAKWRLEEARKRDLA 234
Query: 202 TGYVLPNRTLIEIAK 216
+V+ +L ++A+
Sbjct: 235 VNFVVKELSLWKLAR 249
>gi|383819190|ref|ZP_09974466.1| 3'-5' exonuclease [Mycobacterium phlei RIVM601174]
gi|383337161|gb|EID15542.1| 3'-5' exonuclease [Mycobacterium phlei RIVM601174]
Length = 420
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 15/210 (7%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLL 78
+GP + EV + T + ++H AD+D+ L + G+ ++DT A R+ E+ +L ++
Sbjct: 97 LGP-VAEVLR--TDEWILHAADQDLPCLA-ELGMRPTRLYDTELAGRLAGYEKVNLAAMV 152
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 138
G+ K + ADW RPLPDE L YA D L+ + + L K + ++
Sbjct: 153 QRLLGLQLMKGHGAADWSKRPLPDEWLNYAALDVEVLIDLRHAVAAVLEEQGKSAWAAE- 211
Query: 139 PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
++ R +E + + G+ N + LA V L RD IA+
Sbjct: 212 --------EFEHLRT-FEPTPTRRDRWRRTSGIHKVR-NQRALAAVRELWITRDQIAQRR 261
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D + G +LP+ +I+ A P T +L L
Sbjct: 262 DIAPGRILPDSAIIQAATADPDTVERLTAL 291
>gi|441169030|ref|ZP_20969102.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440615515|gb|ELQ78703.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 385
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLPCL-RDIGMVPSRLFDTELAGRLAGFARVGLGAMVENVLGYALEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTPLTEVYKRSYDVCRQ 153
W RPLP+ LRYA D L+ + D ++ +LS K E + + +
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEDELSRQGKLEWAHQE------FAAIAAAPPA 186
Query: 154 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
K+ S +H + +Q+AVV L RD +A+ D S G VL + +IE
Sbjct: 187 PPRKDPWRRTSGMHKVRRR------RQMAVVRELWTTRDEVAQRRDISPGKVLGDAAIIE 240
Query: 214 IAKQLPTTAAKLRRLLKSKHSYIERYM 240
A LP L L H R +
Sbjct: 241 AALNLPPNTHALAALAGFGHRMGRRQL 267
>gi|417845412|ref|ZP_12491441.1| Ribonuclease D [Haemophilus haemolyticus M21639]
gi|341955248|gb|EGT81709.1| Ribonuclease D [Haemophilus haemolyticus M21639]
Length = 380
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ + F C M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQKFDQLPCPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVIDDCELALA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR + D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNLLELSRLRILAQWRQNVGIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
gi|423686479|ref|ZP_17661287.1| ribonuclease D [Vibrio fischeri SR5]
gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
gi|371494547|gb|EHN70145.1| ribonuclease D [Vibrio fischeri SR5]
Length = 373
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHF 81
L ++ K+ + KV+H D+ Q G M DT + L ++ L+ +
Sbjct: 66 LWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAKLVSDY 125
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
G+ +K DW RPL D+ L YA D HYLL +++ ++ +LS E
Sbjct: 126 LGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQESTL 185
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
V KR EK+ +E +YL I LN +QLA++ +WR AR D +
Sbjct: 186 AVKKR---------EKQPDAEKAYLDIKN--AWQLNPKQLAILKMAAKWRLEEARKRDLA 234
Query: 202 TGYVLPNRTLIEIAK 216
+V+ +L ++A+
Sbjct: 235 VNFVVKELSLWKLAR 249
>gi|379736670|ref|YP_005330176.1| ribonuclease D (modular protein) [Blastococcus saxobsidens DD2]
gi|378784477|emb|CCG04146.1| Ribonuclease D (modular protein) [Blastococcus saxobsidens DD2]
Length = 443
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ +FDT A+R+ L R L ++ G + K + AD
Sbjct: 134 VLHAANQDLPCLA-EIGLVPARIFDTELAARLAGLPRVGLGAVVESLLGYSLQKGHSAAD 192
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+E L YA D L+ + D + L K + RQ
Sbjct: 193 WSTRPLPEEWLVYAALDVEVLVDLRDALAAILGEQGKT----------------EWARQE 236
Query: 155 YEKELLS------ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+E L + ++ + G+ G + +QL ++ + E RD +AR D + G VLP+
Sbjct: 237 FEAILAAGPPAPKQDPWRRTSGVHGL-RSRRQLGMLRAIWEARDDLARRRDIAPGRVLPD 295
Query: 209 RTLIEIAKQLPTTAAKLRRL 228
++ + P L L
Sbjct: 296 SAMVAAVQADPKNEGALLEL 315
>gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
Length = 385
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|433459110|ref|ZP_20416963.1| ribonuclease D [Arthrobacter crystallopoietes BAB-32]
gi|432192276|gb|ELK49175.1| ribonuclease D [Arthrobacter crystallopoietes BAB-32]
Length = 442
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 116 ILHAATQDLPCLS-ALGMWPDRLFDTELAARLAGLPRVGLAAVIETLLGYTLAKEHSAAD 174
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + M L+ K + ++ R+
Sbjct: 175 WSTRPLPEPWLRYAALDVEVLIELRAAMVELLTKQDK---------LRFAEEEFEALRK- 224
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E + + GL + +QLA V L + R+ +A D + G ++P+ ++
Sbjct: 225 TEPAPPRPDPWRRTSGLHQIR-DRRQLAAVRELWQEREQLAAKRDVAPGRLIPDSAIVAA 283
Query: 215 AKQLPTTAAKL 225
A+ +P T +L
Sbjct: 284 ARAMPATVPQL 294
>gi|383638903|ref|ZP_09951309.1| ribonuclease D [Streptomyces chartreusis NRRL 12338]
Length = 395
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 84 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 142
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 194 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLGDAAIVEA 251
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A +P L L H +R +
Sbjct: 252 ALAIPANVHALAALNGFGHRMSKRQL 277
>gi|336117961|ref|YP_004572729.1| ribonuclease D [Microlunatus phosphovorus NM-1]
gi|334685741|dbj|BAK35326.1| putative ribonuclease D [Microlunatus phosphovorus NM-1]
Length = 413
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G+ ++FDT A+R+L R +L +L GV KE+ AD
Sbjct: 103 IIHAASQDLPCLA-EIGMTPLHLFDTELAARLLNYPRVALGTMLTELLGVRLLKEHSAAD 161
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + D + +L + K++ ++ + R+
Sbjct: 162 WSTRPLPAEWLTYAALDVELLVELRDRLADQLVAAGKDAWAAEEFAALAAGAGAPIERR- 220
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + G+ + LA VA L + RD IAR D + +LP+ + E+
Sbjct: 221 -------TDPWRRTSGIHRVR-TRRGLAYVAELWQIRDEIARDTDRAPSRILPDVAIAEL 272
Query: 215 A 215
A
Sbjct: 273 A 273
>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 229 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
+ ERY P+ +K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 278 VLVLDTSSNLKI 289
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
Length = 373
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 20/210 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 114 ILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVD 172
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC--- 151
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 173 WSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGK---------LEWAREEFDAIAAA 223
Query: 152 -RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
K+ S +H +Q+AVV L RD +A+ D S G VL +
Sbjct: 224 PPAPPRKDPWRRTSGMHKV------RRRRQMAVVRELWTTRDQVAQRRDVSPGKVLGDAA 277
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
++E A LP L L H R +
Sbjct: 278 IVEAALALPVDVQALTALPGFGHRMGRRQL 307
>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 229 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
+ ERY P+ +K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 278 VLVLDTSSNLKI 289
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
Length = 385
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEKIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|409390093|ref|ZP_11241864.1| ribonuclease D [Gordonia rubripertincta NBRC 101908]
gi|403199920|dbj|GAB85098.1| ribonuclease D [Gordonia rubripertincta NBRC 101908]
Length = 427
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + AD
Sbjct: 108 VLHAADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD+ L YA D L+ + D M L+ K+ + V R R
Sbjct: 167 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAESGKDGWAREE-FAYVLSRPPAPPR-- 223
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + S +H +A+ LA V L R+ +A D + G VLP+ ++
Sbjct: 224 --TDRWRKTSNIHTVK------SARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNA 275
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 252
A P + +L RL R G LS ++ + +
Sbjct: 276 ATVDPKSNNELTRLPIFGGPRQRRQAGIWLSALQRARE 313
>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. longum ATCC 55813]
gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
gi|384201762|ref|YP_005587509.1| exonuclease [Bifidobacterium longum subsp. longum KACC 91563]
gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|338754769|gb|AEI97758.1| exonuclease [Bifidobacterium longum subsp. longum KACC 91563]
Length = 433
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 20/252 (7%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
Query: 229 LK-----------SKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETE 277
+ ERY P+ +K + A IA K + A E+ E
Sbjct: 284 RSLNERVRIHTGTEQDKMFERY-APIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDE 342
Query: 278 VLVLDTSSNLKI 289
V++ ++++
Sbjct: 343 NGVVNAPRSMRL 354
>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
Length = 381
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 20/217 (9%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D L L +GP L V + H AD D+ L+R ++ DT A+R+
Sbjct: 71 LIDPLVLS-DLGPLLEVV---DNAEVWFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTG 126
Query: 69 LERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 128
L L+ CGV K Q DW +RPLP +M YA +D YL + DI L +
Sbjct: 127 HRTFGLAALVEQHCGVTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVA 186
Query: 129 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLS--ENSYLHIYGLQGAG-LNAQQLAVVA 185
+ +++S + R +++LS E + + G+G L LA++
Sbjct: 187 KDR---------VTWFEQSCESLR----RDVLSRQEKDRDEAWRISGSGRLRPAGLAILR 233
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA 222
+ WRD IAR D VL N+ ++ +A + T+
Sbjct: 234 EVWNWRDGIAREKDVPPFRVLNNQQMLTMATEFETSG 270
>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|384211128|ref|YP_005600210.1| ribonuclease D [Brucella melitensis M5-90]
gi|384408226|ref|YP_005596847.1| ribonuclease D [Brucella melitensis M28]
gi|384444837|ref|YP_005603556.1| ribonuclease D [Brucella melitensis NI]
gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
gi|349742833|gb|AEQ08376.1| ribonuclease D [Brucella melitensis NI]
Length = 385
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEIAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella inopinata BO1]
gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella inopinata BO1]
gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
Length = 385
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEKIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
Length = 422
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A++D+ L + G+ +FDT A R+L + L L+ G KE+ AD
Sbjct: 106 IIHAANQDLACLA-EVGMVPRQVFDTELAGRLLGYPKVGLASLVSEVLGYRMRKEHSAAD 164
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + D ++ +L K E ++ +
Sbjct: 165 WSTRPLPGPWLVYAALDVEMLIELRDAIEQELRREGK---------WEWAQQEFAAILSA 215
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+E + + G+ N + LAVV L E RD IA A D S G +LP+ ++E
Sbjct: 216 PPRE-PKPDPWRRTSGMHRV-RNRRSLAVVRALWEARDQIAAAADISPGRILPDAAIVEA 273
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A +P L+RL K R+M
Sbjct: 274 AAAMPADRETLQRLTAFKGRGAHRHM 299
>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376274500|ref|YP_005114939.1| ribonuclease D [Brucella canis HSK A52141]
gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363403067|gb|AEW13362.1| ribonuclease D [Brucella canis HSK A52141]
Length = 382
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340790381|ref|YP_004755846.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|376273517|ref|YP_005152095.1| ribonuclease D [Brucella abortus A13334]
gi|423167117|ref|ZP_17153820.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|423170507|ref|ZP_17157182.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|423173412|ref|ZP_17160083.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|423177302|ref|ZP_17163948.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|423179938|ref|ZP_17166579.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|423183070|ref|ZP_17169707.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|423185988|ref|ZP_17172602.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
gi|423189128|ref|ZP_17175738.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340558840|gb|AEK54078.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|363401123|gb|AEW18093.1| ribonuclease D [Brucella abortus A13334]
gi|374540555|gb|EHR12055.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|374542005|gb|EHR13495.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|374542741|gb|EHR14228.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|374549783|gb|EHR21225.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|374550302|gb|EHR21741.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|374550586|gb|EHR22022.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|374558786|gb|EHR30179.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|374559376|gb|EHR30764.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
Length = 385
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|404214776|ref|YP_006668971.1| Ribonuclease D [Gordonia sp. KTR9]
gi|403645575|gb|AFR48815.1| Ribonuclease D [Gordonia sp. KTR9]
Length = 425
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 12/216 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + AD
Sbjct: 105 VLHAADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAEFLGLGLLKGHGAAD 163
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPDE L YA D L+ + D M L+ +E D E + +Y + R
Sbjct: 164 WSRRPLPDEWLNYAALDVEVLVELRDAMDAALA-----AEGKDGWAREEF--AYILTRPP 216
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+I+ ++ + + LA V L R+ +A+ D + G VLP+ ++
Sbjct: 217 APPRTDRWRKTSNIHTVK----STRALAAVRELWTAREELAQRRDVAPGRVLPDTAIVNA 272
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
A P + A L +L R G LS ++ +
Sbjct: 273 ATVNPESIADLTKLPVFGGPRQRRQAGIWLSALQRA 308
>gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
Length = 384
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 433
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 283
>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|376280430|ref|YP_005154436.1| ribonuclease D [Brucella suis VBI22]
gi|384224424|ref|YP_005615588.1| ribonuclease D [Brucella suis 1330]
gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|343382604|gb|AEM18096.1| ribonuclease D [Brucella suis 1330]
gi|358258029|gb|AEU05764.1| ribonuclease D [Brucella suis VBI22]
Length = 385
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|335420266|ref|ZP_08551304.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
gi|334894625|gb|EGM32810.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
Length = 382
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 14/205 (6%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L + D + KV H A++D+ L + FG +FDT A+ ++ L+ + + Y L+
Sbjct: 72 LAALLTDTSVLKVFHSAEQDLEVLYQRFGTMPAPLFDTQVAAPLVGLD-DQMGYARLIKA 130
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 140
+ K + DW RPLP L YA +D YL Y ++ L +E+ D
Sbjct: 131 LLDIELPKAHTRTDWSKRPLPTGALDYAADDVRYLALAYHVIGNTLVEHEREAWLVDDFE 190
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 200
V +DV + + S + LN Q +A + +WR+ A A D
Sbjct: 191 QMVQPERFDVDTSAAWRRIKSWHR-----------LNPAQQQALAEIADWREREAMASDR 239
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKL 225
++L + +IE+AK+ P A L
Sbjct: 240 PRRWILADDIVIELAKRRPQNADAL 264
>gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045]
gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045]
Length = 428
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 23/215 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 118 VLHAATQDLPCL-REIGMRPTRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWALQEFDAIASA 227
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV L + RD IA+ D S G VL + ++E
Sbjct: 228 PPAE-PRKDPWRRTSGMHKV-RRRRQMAVVRELWQTRDRIAQRRDVSPGKVLGDTAIVEA 285
Query: 215 AKQLPTTAAKL-----------RRLLKSKHSYIER 238
A LP L RR L+ S ++R
Sbjct: 286 ALALPPNVHALAGLNGFGHRMGRRQLEQWQSAVDR 320
>gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
Length = 406
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 35 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++H A D+ WL G++ +FDT A+R R +L ++ V K +
Sbjct: 90 IIHAAPSDLPSLGWL----GLFPGTLFDTELAARFTGFPRTNLGAIIAELFDVQLGKGHG 145
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
+ DW + L +EM YA D LL + ++ L+ K + V K ++D
Sbjct: 146 DDDWSIPQLSEEMRAYAALDVELLLELATTLRDILAEQEKLEWMLEECAAIVAKHAHDTS 205
Query: 152 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
Q S+ I G+ N Q A L RD I+R D + G VLPN+ L
Sbjct: 206 PQ--------PGSWRDIKGVSSLK-NGNQRAAAQSLWNLRDDISRRTDTAPGRVLPNKVL 256
Query: 212 IEIAKQLPTTAAKLRRL 228
+EIA+ LP+T +L R+
Sbjct: 257 VEIARVLPSTQPQLTRI 273
>gi|398781584|ref|ZP_10545613.1| ribonuclease D [Streptomyces auratus AGR0001]
gi|396997313|gb|EJJ08278.1| ribonuclease D [Streptomyces auratus AGR0001]
Length = 385
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLP-CMRDIGMVPTRLFDTELAGRLAGFARVGLGAMVENVLGFALEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L E + + +
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEEEL-----ERQGKREWARQEFAAIAAAPPPP 187
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
K+ S +H +Q+AVV L RD +A+ D S G VL + ++E
Sbjct: 188 PRKDPWRRTSGMHKV------RRRRQMAVVRELWTARDQVAQRRDVSPGKVLGDAAIVEA 241
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A LP + L L H R +
Sbjct: 242 ALSLPPNSHALAALPGFGHRMGRRQL 267
>gi|375264824|ref|YP_005022267.1| ribonuclease D [Vibrio sp. EJY3]
gi|369840148|gb|AEX21292.1| ribonuclease D [Vibrio sp. EJY3]
Length = 388
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 14/239 (5%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYL 77
+ P++ E+ KD + KV+H D+ Q FG M DT + L ++ L
Sbjct: 79 MSPFV-ELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATL 137
Query: 78 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 137
+ + GV +K DW RPL + L YA D HYLL +Y+I+ K+ ++
Sbjct: 138 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEILLDKV---------TE 188
Query: 138 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 197
++ D+ +E+ EN+YL I G L +LAV+ L WR A
Sbjct: 189 AGWWHAVQQESDLLVSKRIREVNEENAYLDIKG--AWQLKPAELAVLKPLATWRYRQAIK 246
Query: 198 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
D + +V L+ +A+ L T+ K + R+ + I+K + Q A+
Sbjct: 247 RDLALNFVFKEGDLLTVAR-LGLTSFKKMEAEGIDIRAVNRHGAKIADIVKKAKQTPAD 304
>gi|408681544|ref|YP_006881371.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712]
gi|328885873|emb|CCA59112.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712]
Length = 427
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L RD G+ ++FDT A R+ R L ++ G K + D
Sbjct: 117 ILHAATQDLPCL-RDIGMLPTSLFDTELAGRLAGFPRVGLGAMVESVLGYALEKGHSAVD 175
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC--- 151
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 176 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWAHQEFDAIAAA 226
Query: 152 -RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
K+ S +H +Q+AVV L RD +A+ D S G VL +
Sbjct: 227 PPAPPRKDPWRRTSGMHKV------RRRRQMAVVRELWTARDKVAQRRDVSPGKVLSDAA 280
Query: 211 LIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
++E A +P L L H R +
Sbjct: 281 IVEAALAVPVNVTALMALPGYGHRMGRRQL 310
>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
Length = 433
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 112 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 171
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 172 ALDVEVLIELETLMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 223
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 224 SRITQLSRDPRGLAIAKSLWEERDRLARRYDIAPSLLLTDSSIIEAATNKPHNAAQFRAL 283
>gi|407983300|ref|ZP_11163957.1| 3'-5' exonuclease family protein [Mycobacterium hassiacum DSM
44199]
gi|407375193|gb|EKF24152.1| 3'-5' exonuclease family protein [Mycobacterium hassiacum DSM
44199]
Length = 426
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ ++ +L + G+ K +
Sbjct: 102 TDEWVLHAADQDLPCLA-ELGMRPPKLYDTELAGRLAGHDKVNLAAEVQRLLGLQLTKGH 160
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLP E L YA D LL + + + L+ K TE + ++
Sbjct: 161 GAADWSKRPLPPEWLNYAALDVEVLLELREAIAKVLAEQGK---------TEWAAQEFEY 211
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R L E + + + G+ + + LA V L RD IA+ D + G +LP+
Sbjct: 212 LRTL-EPQPTRRDRWRRTSGIHKVR-DRRALAAVRELWLVRDQIAQRRDIAPGRILPDSA 269
Query: 211 LIEIAKQLPTTAAKLRRL 228
+IE A P T KL L
Sbjct: 270 IIEAALADPDTVEKLTAL 287
>gi|220912416|ref|YP_002487725.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
gi|219859294|gb|ACL39636.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
Length = 443
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAATQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 150
W RPLP+ LRYA D L + + + L + K E E + + D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLSELREELVELLQADGKLEYAEQEFAAILAAGIAPPRLDP 238
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ S LH + +QLA V L RD +AR D + G ++P+
Sbjct: 239 WRK---------TSGLHQIR------DRRQLAAVRELWLERDSLARKRDVAPGRLIPDSA 283
Query: 211 LIEIAKQLPTTAAKL 225
L+ AK +P+T +L
Sbjct: 284 LVSAAKAMPSTVPQL 298
>gi|32564304|ref|NP_871964.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
gi|26985796|emb|CAD59140.1| Protein CRN-3, isoform b [Caenorhabditis elegans]
Length = 594
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R EDF++D + VG L E F +P KV HG+D D++WLQRD+G+++ N+FDT
Sbjct: 321 ISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLFDT 379
>gi|403526765|ref|YP_006661652.1| ribonuclease D [Arthrobacter sp. Rue61a]
gi|403229192|gb|AFR28614.1| putative ribonuclease D [Arthrobacter sp. Rue61a]
Length = 453
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 150
W RPLP+ LRYA D L + + + L + K E E + + D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEYAEQEFAGILAAGLPAPRVDP 238
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ S LH + +QLA V L RD +AR D + G ++P+
Sbjct: 239 WRK---------TSGLHQI------RDRRQLAAVRELWLERDQLARKRDVAPGRLIPDSA 283
Query: 211 LIEIAKQLPTTAAKL 225
L+ AK +PTT +L
Sbjct: 284 LVAAAKAMPTTVPQL 298
>gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1]
gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1]
Length = 453
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLAELREELIELLEADGK-LEYAEQEFAGILAAGLPAPR-- 235
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + S LH + +QLA V L RD +AR D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQI------RDRRQLAAVRELWLERDQLARKRDVAPGRLIPDSALVAA 287
Query: 215 AKQLPTTAAKL 225
AK +PTT +L
Sbjct: 288 AKAMPTTVPQL 298
>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
biovar Abortus 2308]
Length = 385
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDELAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
+VD L + + P+L ++ ++ KV H A +DI + G+ +FDT A+ V
Sbjct: 52 IVDALADGLDLAPFL-DLMRNERVTKVFHAARQDIEIVYHLGGLIPHPLFDTQVAAMVCG 110
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ S + L+ G +K + DW RPL + L YA D YL +Y +K L+
Sbjct: 111 FGDSISYDQLVQRITGARIDKSSRFTDWARRPLTQKQLDYALADVTYLRDVYRFLKANLA 170
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELL-SENSYLH--IYGLQGAGLNAQ---QL 181
+ D E E+L SE +Y + Q + + +L
Sbjct: 171 EQDRSHWVED------------------EMEILTSEGTYRTEPVNAWQRLKMRVRKPVEL 212
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
AV+ + WR++ A++ D VL + + EIA Q P TA L RL
Sbjct: 213 AVLMEVAAWREIEAQSRDVPRSRVLKDDAIYEIAAQQPQTAEALSRL 259
>gi|399524453|ref|ZP_10764999.1| 3'-5' exonuclease [Atopobium sp. ICM58]
gi|398374379|gb|EJN52034.1| 3'-5' exonuclease [Atopobium sp. ICM58]
Length = 414
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 15/174 (8%)
Query: 48 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 107
R G+ ++FDT A+R++ LER L + G+ K++Q +DW VRPLP E LRY
Sbjct: 114 RQVGLRAPSLFDTEVAARLVGLERFGLAAVAEQVLGLGLVKDHQASDWSVRPLPKEWLRY 173
Query: 108 AREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLH 167
A D L +Y + +L M + E ++ + + S+
Sbjct: 174 AALDVELLTELYYRLSRRLDQMGR---------WEWAQQEFAYALTVAPPAAKSD----R 220
Query: 168 IYGLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L GAG + + L V+ L E R+ IAR D S G ++ N L+ A P
Sbjct: 221 WRSLPGAGKIRSRRGLGVLKALWETRESIARRIDMSPGRLVRNAALVRAASNPP 274
>gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8]
Length = 398
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 77 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 136
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 137 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 188
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 189 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 248
>gi|421615623|ref|ZP_16056645.1| ribonuclease D [Pseudomonas stutzeri KOS6]
gi|409782427|gb|EKN61988.1| ribonuclease D [Pseudomonas stutzeri KOS6]
Length = 359
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 17/223 (7%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D L +R V +DP KV+H D+ L R G +FDT A+ L
Sbjct: 55 YLIDPLAVRNWTA--FAGVLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYL 112
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
+ S+ Y L+ G+ K +DW RPL + +RYA ED +L +Y+ +
Sbjct: 113 NIG-FSMGYSRLVQAVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEAL--- 168
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
+PK SE+ L E ++ L ++E E +Y + Q L QQLAV+
Sbjct: 169 ---LPKLSEDKRAWLLE---DGAELVANL-QRESDPEEAYREVK--QAWRLKPQQLAVLK 219
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
L WR+ ARA ++ VL +L +A+ P L R+
Sbjct: 220 ALTAWRERQARARNQPRNRVLREASLWPLARTQPRDLVTLARI 262
>gi|373252634|ref|ZP_09540752.1| ribonuclease D [Nesterenkonia sp. F]
Length = 417
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 21/196 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ V KE+ AD
Sbjct: 103 ILHAASQDLPCLA-ELGMHPHRLFDTELAARMAGLPRVGLGAVVETLLNVRLAKEHSAAD 161
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY-----D 149
W RPLP + LRYA D L+ ++ +L+ M L E KRS+ +
Sbjct: 162 WSRRPLPKDWLRYAALDVELLVE----LRTELTRM----------LDEQGKRSWADEEFE 207
Query: 150 VCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 209
R + + ++ + G+ + ++LAV+ L RD +A D S G++LP+
Sbjct: 208 HLRTHRPQTVPRKDRWRKTSGINKIK-SPRRLAVLRELWRARDHLAERRDVSPGHILPDS 266
Query: 210 TLIEIAKQLPTTAAKL 225
L+ A +P T L
Sbjct: 267 ALVAAAAAMPRTVPDL 282
>gi|302541899|ref|ZP_07294241.1| putative ribonuclease D [Streptomyces hygroscopicus ATCC 53653]
gi|302459517|gb|EFL22610.1| putative ribonuclease D [Streptomyces himastatinicus ATCC 53653]
Length = 425
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L RD G+ +FDT A R+ R L ++ + G K + D
Sbjct: 114 VLHAATQDLPCL-RDIGMVPDRLFDTELAGRLAGFARVGLGAMVENILGYALEKGHSAVD 172
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK-ESENSDTPLTEVYKRSYDVCRQ 153
W RPLP+ L YA D L+ + D ++ +L+ K E + + +
Sbjct: 173 WSTRPLPEPWLHYAALDVELLVDLRDALEEELTRQGKLEWAHQE------FAAIAAAPPA 226
Query: 154 LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
K+ S +H + +Q+AVV L RD IA+ D S G VL + ++E
Sbjct: 227 PPRKDPWRRTSGMHKVRRR------RQMAVVRELWTARDRIAQRRDVSPGKVLGDAAIVE 280
Query: 214 IAKQLPTTAAKLRRLLKSKHSYIERYM 240
A LP A L L H R +
Sbjct: 281 AALALPVNARALSALSGFGHRMSRRQL 307
>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
17982]
gi|153798567|gb|EDN80987.1| putative ribonuclease D [Actinomyces odontolyticus ATCC 17982]
Length = 414
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 1 MSLRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+ +R ED F++DT L P L + ++H +D+ L R G+ +
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSTL 123
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT A+R++ LER L ++ G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEIAARLIGLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 171
+Y + +L M + ++ +Q + L + + I G
Sbjct: 184 LYYRLSKRLDEMGR----------------WEWAQQEFGYALSVTPPGPKPDRWRSIPG- 226
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
G + + LAV+ L E R+ IAR D S G ++ N L+ A P
Sbjct: 227 AGKIRSRRGLAVLKALWETRESIARRIDLSPGRLVRNAALVRAASNPP 274
>gi|374623203|ref|ZP_09695717.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
gi|373942318|gb|EHQ52863.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
Length = 381
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 20/252 (7%)
Query: 5 TEDFV--VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTG 61
T D V +D L L + P L + + P KV+H A +D+ ++ RD G +FDT
Sbjct: 49 TPDLVACIDPLALE-DLAP-LDRLLRRPDLLKVLHAAGQDLEIFYHRD-GTVPAPIFDTQ 105
Query: 62 QASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ +L + + Y L+ GV K + DW RPL E L YA +D YL Y
Sbjct: 106 VAASLLG-HGDQIGYGKLIQAVLGVELEKGHSRTDWARRPLDPEQLTYAADDVRYLAQAY 164
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+++ L E T L E ++R D YE + + + G+ L
Sbjct: 165 PLIRDAL-----ERSGRLTWLEEDFRRLADPTG--YEPA--PDAMWRRLKGINT--LRGI 213
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239
QLA+ L WR+ A D ++L + ++++A++ P+T A L R+ + + R+
Sbjct: 214 QLAIARELARWREQEAMRADRPRRWLLQDEVILDLARRKPSTPADLERIRGLQEQTLRRH 273
Query: 240 MGPVLSIIKNSM 251
+L +++ +
Sbjct: 274 GQTLLDLVRTGL 285
>gi|444911412|ref|ZP_21231587.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
gi|444718170|gb|ELW58986.1| Ribonuclease D [Cystobacter fuscus DSM 2262]
Length = 388
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 17/259 (6%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
T+ F+ DTL+ V L V +DP + K H A D+ +L + G+ + +FDT +A+
Sbjct: 55 TDVFLFDTLQPGVHPS-LLARVMEDPERTKFFHAASGDLPFLA-EAGVRVRGLFDTHRAA 112
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
+L + L L GV KE+Q +D+ +RPLP M Y D YL +
Sbjct: 113 TLLGWPKVGLADLARERLGVELPKEHQQSDFALRPLPPGMRDYIANDVRYL--------V 164
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL--- 181
+L +E L EV D R E + L GL QL
Sbjct: 165 ELGRQVREECRKADVLEEVL---LDCQRMCDEAAARPDVGAEFKPKLPKGGLTPAQLLLA 221
Query: 182 -AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
+ L + R A A++ G L N + +IA + P +L R + +++ +
Sbjct: 222 NTIAQALHKKRLEWAEAENVPMGRTLSNMAITDIAIKPPGNPKELARAAGVRGAFVRAHG 281
Query: 241 GPVLSIIKNSMQNAANFEV 259
V+S+++ ++ + E+
Sbjct: 282 EEVISLVRELLEKSRQGEL 300
>gi|402849302|ref|ZP_10897541.1| Ribonuclease D [Rhodovulum sp. PH10]
gi|402500432|gb|EJW12105.1| Ribonuclease D [Rhodovulum sp. PH10]
Length = 406
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 26/232 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ E VVD L + + P+ + D KV H A +DI + G+ +FDT
Sbjct: 68 MACVGEAVVVDALADGIDLSPFW-ALMADQRVVKVFHAARQDIEIVWHMAGLIPQPLFDT 126
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ VL + S + L+ CG N +K ++ DW RPL + YA D +L +Y
Sbjct: 127 QVAAMVLGYGDAISYDQLVQRVCGTNLDKSHRFTDWSRRPLTPAQIMYATSDVTHLRDVY 186
Query: 120 DIMKIKLSS------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 173
+ L+ + +E E +P T Y E E ++ L+
Sbjct: 187 VALSADLAKRGRANWVDEEMEVLTSPST-------------YRAE--PETAWER---LKS 228
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
++LA++ + WR+ A+A D G VL + + EIA Q PTT +L
Sbjct: 229 RVRKPKELAILIEVAAWREREAQARDVPRGRVLKDDVIGEIALQAPTTPERL 280
>gi|333369485|ref|ZP_08461599.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
Length = 437
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 49 DFGIY--------LCNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRP 99
D GI+ L N+FDT A L + + + L V+ +K +DW RP
Sbjct: 130 DLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELDVHVDKGESQSDWLARP 189
Query: 100 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 159
L E YA +D YLL +YDI++ +L+ K+S + + + C QLY KEL
Sbjct: 190 LTHEQESYAIDDVRYLLNLYDILQQQLT---KQS---------LLDKVIEDC-QLYTKEL 236
Query: 160 L------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
+ +YL + + G +Q+AV+ + WR+ +ARA ++ ++L + + +
Sbjct: 237 YEAANIEDDATYLAMADFRYTG---EQMAVLQAVSSWREALARATNQPKTFILKKQAVRD 293
Query: 214 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
+ + P + +L + S I Y ++ II +
Sbjct: 294 VVVEFPKSVKQLTQKTTMHRSMIHLYGEELIDIINKA 330
>gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C]
gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C]
Length = 428
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L R+ G+ ++FDT A R+ R L ++ G K + D
Sbjct: 118 ILHAATQDLPCL-REIGMVPTSLFDTELAGRLAGFPRVGLGAMVEGVLGYALEKGHSAVD 176
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYD----V 150
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 177 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 227
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
K+ S +H +Q+AVV L E RD IA+ D S G VL +
Sbjct: 228 PPAPPRKDPWRRTSGMHKV------RRRRQMAVVRELWESRDRIAQRRDVSPGKVLGDAA 281
Query: 211 LIEIAKQLPTTAAKLRRL 228
++E A LP L L
Sbjct: 282 IVEAALALPVNVHALSSL 299
>gi|302846316|ref|XP_002954695.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
nagariensis]
gi|300260114|gb|EFJ44336.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
nagariensis]
Length = 1044
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
++VD L LR VG L + DP KV+HG D+VWLQRDF +YL N+FDT +AS+
Sbjct: 280 WLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKASQ 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 50 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY---QNADWRVRPLPDEMLR 106
F ++C +VL E +L LL G++ E Q ADWR RPLP +LR
Sbjct: 384 FEAHMCGPACFWLFLKVLGYENRALASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLR 443
Query: 107 YAREDTHYLLYIYDIMKIKLSSM 129
YA D YL Y+ D+++ +L+++
Sbjct: 444 YAAADVAYLPYLADVLRRELAAL 466
>gi|302846314|ref|XP_002954694.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
nagariensis]
gi|300260113|gb|EFJ44335.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
nagariensis]
Length = 756
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
++VD L LR VG L + DP KV+HG D+VWLQRDF +YL N+FDT +AS+
Sbjct: 280 WLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKASQ 337
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 50 FGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY---QNADWRVRPLPDEMLR 106
F ++C +VL E +L LL G++ E Q ADWR RPLP +LR
Sbjct: 384 FEAHMCGPACFWLFLKVLGYENRALASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLR 443
Query: 107 YAREDTHYLLYIYDIMKIKLSSM 129
YA D YL Y+ D+++ +L+++
Sbjct: 444 YAAADVAYLPYLADVLRRELAAL 466
>gi|359298919|ref|ZP_09184758.1| ribonuclease D [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305636|ref|ZP_10824695.1| ribonuclease D [Haemophilus sputorum HK 2154]
gi|400376749|gb|EJP29636.1| ribonuclease D [Haemophilus sputorum HK 2154]
Length = 370
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 18/204 (8%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 84
+ D KV+H D+ Q F M DT + L L + L+ H+ +
Sbjct: 71 LLADEQVIKVLHACSEDLEVFQHRFQQLPTPMIDTQIMAGFLGLGASIGFAKLVAHYLEI 130
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
+K DW RPL + L YA D YLL IY M+ + EN P
Sbjct: 131 ELDKGASRTDWLARPLSEVQLDYAAADVWYLLPIYQKMQEAM------QENRWMPAVR-- 182
Query: 145 KRSYDVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ C QL +K + N +YL I Q L QQLAV+ L +WR A+ D +
Sbjct: 183 ----EECEQLLQKRQKTVNPNKAYLDIS--QAWQLTPQQLAVLQVLAKWRLEEAQKRDLA 236
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
+V+ ++L EIAK P ++L
Sbjct: 237 LNFVVKEQSLFEIAKTQPKHTSEL 260
>gi|453050614|gb|EME98147.1| ribonuclease D [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 395
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 84 VLHAATQDLPCL-REIGMTPARLFDTELAGRLAGFARVGLGAMVENVLGYALEKGHSAVD 142
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + + ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLIDLRNALEKELDRQGK---------LEWARQEFDAI-AA 192
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + G+ +Q+AVV L RD IA+ D S G VL + +IE
Sbjct: 193 APPAPPRKDPWRRTSGMHKV-RRRRQMAVVRELWTARDQIAQKRDVSPGKVLGDGAIIEA 251
Query: 215 AKQLPTTAAKL 225
A +P A L
Sbjct: 252 ALNMPANAHAL 262
>gi|359421116|ref|ZP_09213046.1| putative ribonuclease [Gordonia araii NBRC 100433]
gi|358242981|dbj|GAB11115.1| putative ribonuclease [Gordonia araii NBRC 100433]
Length = 402
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L R+ G ++DT A R+L LER +L + HF G K + AD
Sbjct: 94 VLHAADQDLPCL-RELGFECGTLYDTELAGRLLGLERVNLAAMTAHFLGRELRKGHGAAD 152
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D L+ + D M L K + + Y R
Sbjct: 153 WSKRPLPADWLNYAALDVELLVELRDAMDSALRGAGKNDWAAQ-------EFEYIRQRPP 205
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+I+ L+ +QLA V L R+ +A+ D + G VLP+ +++
Sbjct: 206 APPRPDRWRRTSNIHSLK----TPRQLAAVRELWLAREDLAQHRDVAPGRVLPDAAIVDA 261
Query: 215 AKQLPTTAAKLRRL 228
A PTT +L L
Sbjct: 262 AAANPTTVDELTAL 275
>gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
Length = 480
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L + L ++ G KE+ AD
Sbjct: 155 ILHAASQDLPCLS-ELGMWPSALFDTELAARIAGLPKVGLAAVVEQLLGFGLAKEHSAAD 213
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKI------KLSSMPKE-----SENSDTPLTEV 143
W RPLP+ LRYA D L + + + KL +E + P +
Sbjct: 214 WSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEWATQEFQAILAAGPPPPRIDP 273
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++R+ V QL ++ +QLA V L RD +A+ D + G
Sbjct: 274 WRRTSGV-HQLRDR---------------------KQLAAVRQLWLERDALAQNRDVAPG 311
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
+LP+ L+ A+ +P T +L
Sbjct: 312 RLLPDSALVAAARAMPDTVPQL 333
>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
Length = 400
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 27/238 (11%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLH 79
P LR + DP V H A +D+ L F I+ N +DT A+ + + E+ L+
Sbjct: 73 PVLR-LIGDPAVVSVAHAAKQDLGILAARFDIFAENFWDTQIAAAFVGMAEQIGYGKLVD 131
Query: 80 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTP 139
GV +K Q W RPL LRYA +D YL ++ + +L + + + +
Sbjct: 132 ALLGVQLDKASQFTKWLERPLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGE-- 189
Query: 140 LTEVYKRSYDVCRQLYEKELLSENSY------LHIYGLQGAG-LNAQQLAVVAGLCEWRD 192
E LL+ ++ L + L+GAG L + L +A L WR
Sbjct: 190 ----------------ESALLARDAMPYGPAELAYHSLKGAGALRGKALGRLAALAAWRQ 233
Query: 193 VIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
A AD+ +VLP++ L+E++++ +R + RY ++S ++ +
Sbjct: 234 ERALADNLPLSWVLPDKALLELSRRGARGPGDVRNAPGVTGTIARRYADAIVSALQGA 291
>gi|227503491|ref|ZP_03933540.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
gi|227075994|gb|EEI13957.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
Length = 406
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 35 VMHGADRDIV---WLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++H A D+ WL G++ +FDT A+R R +L ++ V K +
Sbjct: 90 IIHAAPSDLPSLGWL----GLFPGTLFDTELAARFAGFHRTNLGAIIAELFDVQLEKGHG 145
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
+ DW + L +EM YA D LL + ++ L+ K + V K + D
Sbjct: 146 DDDWSIPRLSEEMRAYAALDVELLLELATTLRDILAEQEKLDWMVEECAAIVAKHANDTA 205
Query: 152 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
Q +S+ I G+ N +Q A L RD I+R D + G VLPN+ L
Sbjct: 206 PQ--------PHSWRDIKGVSSLK-NGKQRAAAQSLWALRDDISRRTDTAPGRVLPNKVL 256
Query: 212 IEIAKQLPTTAAKLRRL 228
+EIA+ LP+T +L R+
Sbjct: 257 VEIARVLPSTQPQLTRI 273
>gi|359776723|ref|ZP_09280026.1| putative ribonuclease D [Arthrobacter globiformis NBRC 12137]
gi|359305860|dbj|GAB13855.1| putative ribonuclease D [Arthrobacter globiformis NBRC 12137]
Length = 443
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELREELIELLEADGK-LEYAEQEFAAILSAGLAAPR-- 235
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + S LH + +QLA V L RD +A+ D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQIR------DRRQLAAVRELWLERDALAQKRDVAPGRLIPDSALVAA 287
Query: 215 AKQLPTTAAKL 225
AK +PTT +L
Sbjct: 288 AKAMPTTVPQL 298
>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
Length = 389
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
T+ F+ DTL V L + DP + K H A D+ +L + GI + +FDT +A+
Sbjct: 55 TDIFLFDTLAPGVDAS-LLAPLMADPERTKYFHAAQGDLQFLA-EAGIRVRGLFDTHRAA 112
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
+L + L + GV KE+Q +D+ +RPLP EM Y D YL
Sbjct: 113 TLLGWPKVGLADIARERLGVELPKEHQQSDFSLRPLPPEMREYIANDVRYL--------C 164
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL--- 181
+L +E+ + L EV +C + + + + L +GL+ QL
Sbjct: 165 ELGRQVREACRTAGILEEVLLDCDRMCEEAVARPDVGADFK---PKLPRSGLSPVQLTLA 221
Query: 182 -AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
AV L R A + G +L N + +IA +LP +L R + ++ +
Sbjct: 222 HAVAHALHTKRLEWAEKANVPMGRMLSNMAIGDIAVKLPANPKELARAAGVRGGFVREHG 281
Query: 241 GPVLSIIKNSMQ 252
L+I++ ++
Sbjct: 282 EETLAIVRELLE 293
>gi|404258462|ref|ZP_10961781.1| ribonuclease D [Gordonia namibiensis NBRC 108229]
gi|403402976|dbj|GAC00191.1| ribonuclease D [Gordonia namibiensis NBRC 108229]
Length = 426
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L R+ G ++DT A R+L L + +L ++ F G+ K + AD
Sbjct: 108 VLHAADQDLPCL-RELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAAD 166
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLPD+ L YA D L+ + D M L+ K+ + V R R
Sbjct: 167 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAESGKDGWAREE-FAYVLARPPAPPR-- 223
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + S +H +A+ LA V L R+ +A D + G VLP+ ++
Sbjct: 224 --TDRWRKTSNIHTVK------SARALAAVRELWTAREELAERRDVAPGRVLPDTAIVNA 275
Query: 215 AKQLPTTAAKLRRL 228
A P + +L RL
Sbjct: 276 ATVDPKSNNELTRL 289
>gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68]
gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68]
Length = 408
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
+ G+ +FDT A+R+L L R L + H+ G+ KE+ ADW RPLP + YA
Sbjct: 87 EIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYA 146
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + +M+ L + K+ ++ + S+ + L ++ +L I
Sbjct: 147 ALDVEVLIELETMMRRDLKAAGKDEWAAE-------EFSHALVAGLAPRK-PHPIPWLRI 198
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + + LA+ L E RD +AR D + +L + ++IE A P AA+ R L
Sbjct: 199 SRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRAL 258
>gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
Length = 398
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L R+ G+ N+FDT A +L +R SL+ ++ G KE+ +AD
Sbjct: 92 ILHAADQDLPCL-RELGLEPSNVFDTELAGLILGYDRVSLQSMIAEELGFVLAKEHSDAD 150
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPL E+ YA D L+ + + + KL KE+ + L+E C ++
Sbjct: 151 WSARPLGPELRAYAALDVDLLIELRESLTGKL----KEAGRYEWFLSE--------CEEV 198
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQ-LAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
+ L + ++ A Q+ LA++ L E R+ +A D + G VLPN L
Sbjct: 199 RRRPLPPAHPQPWRKAVKHAKFPDQRSLAMLKALWEAREKLAEDRDLAPGKVLPNNVLAN 258
Query: 214 IAKQLPTTAAKLRR--LLKSK 232
+A + P + + + + LL+S+
Sbjct: 259 LAARKPRSRSDVAQSSLLRSR 279
>gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 398
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A+R+L + R L ++ G++ KE+ AD
Sbjct: 79 VLHAATQDLTCL-REVGLDPVTIFDTELAARLLGMPRVGLGTVVEELLGIHLTKEHSAAD 137
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L + D + L + K ++ RQ
Sbjct: 138 WSTRPLPGPWLEYAALDVELLPDLRDAVAGLLDAADKT----------------EIARQE 181
Query: 155 YEKELLSENSYLH---------IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 205
+E EL E + + I+ ++G + LA L RD +AR D + G +
Sbjct: 182 FEDELTRELTTVRSDPWRRLSGIHSIRG----VRNLATARELWLSRDALARQLDIAPGRL 237
Query: 206 LPN 208
+P+
Sbjct: 238 VPD 240
>gi|418472457|ref|ZP_13042195.1| ribonuclease, partial [Streptomyces coelicoflavus ZG0656]
gi|371546925|gb|EHN75347.1| ribonuclease, partial [Streptomyces coelicoflavus ZG0656]
Length = 298
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ + G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFHAIASA 183
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 184 PPPE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLGDAAIVEA 241
Query: 215 AKQLPTTAAKLRRL 228
A LP A L L
Sbjct: 242 ALALPPNAHALAAL 255
>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
Length = 379
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
T+ F+ DTL V L + DP + K H A D+ +L + GI + +FDT +A+
Sbjct: 45 TDIFLFDTLAPGVDAS-LLAPLMADPERTKYFHAAQGDLQFLA-EAGIRVRGLFDTHRAA 102
Query: 65 RVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
+L + L + GV KE+Q +D+ +RPLP EM Y D YL
Sbjct: 103 TLLGWPKVGLADIARERLGVELPKEHQQSDFSLRPLPPEMREYIANDVRYL--------C 154
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL--- 181
+L +E+ + L EV +C + + + + L +GL+ QL
Sbjct: 155 ELGRQVREACRTAGILEEVLLDCDRMCEEAVARPDVGADFK---PKLPRSGLSPVQLTLA 211
Query: 182 -AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
AV L R A + G +L N + +IA +LP +L R + ++ +
Sbjct: 212 HAVAHALHTKRLEWAEKANVPMGRMLSNMAIGDIAVKLPANPKELARAAGVRGGFVREHG 271
Query: 241 GPVLSIIKNSMQ 252
L+I++ ++
Sbjct: 272 EETLAIVRELLE 283
>gi|396585245|ref|ZP_10485670.1| 3'-5' exonuclease [Actinomyces sp. ICM47]
gi|395546974|gb|EJG14494.1| 3'-5' exonuclease [Actinomyces sp. ICM47]
Length = 414
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 48 RDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRY 107
R G+ +FDT A+R++ LER L + G+ K++Q +DW VRPLP E LRY
Sbjct: 114 RQVGLRPSALFDTEIAARLVGLERFGLAAVAEQVLGLGLVKDHQASDWSVRPLPKEWLRY 173
Query: 108 AREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYL- 166
A D L +Y + +L M + ++ +Q + L +
Sbjct: 174 AALDVELLTELYYRLSKRLDQMGR----------------WEWAQQEFAHALSVKPPTAK 217
Query: 167 --HIYGLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L GAG + + L V+ L E R+ IAR D S G ++ N L+ A P
Sbjct: 218 PDRWRSLPGAGKIRSRRGLGVLKALWETRESIARRIDMSPGRLVRNAALVRAASNPP 274
>gi|337269427|ref|YP_004613482.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
gi|336029737|gb|AEH89388.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 28/228 (12%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
++D L + + P+ + + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLSSDIDLRPFFK-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+L+ EN L E DV R+ Y+ E+++ L+ Q+
Sbjct: 166 NAELA-----RENRAHWLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQE 211
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
LA+V + WR+ AR D G VL + + E+A+Q P AA L +L
Sbjct: 212 LAIVQAVAAWREREARERDVPRGRVLKDDAIYEVAQQAPRDAAALAKL 259
>gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
Length = 418
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A+R+ L R L ++ G K + AD
Sbjct: 109 VLHAASQDLPSLA-EVGLVPARLFDTELAARLAGLPRVGLGAVVESLLGYRLEKGHSAAD 167
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+E L YA D L+ + D + L K +E + + R
Sbjct: 168 WSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGK-TEWARQEFAAILAAGPPAPRA- 225
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + G+ G + +QL ++ L + RD +AR D + G VLP+ ++
Sbjct: 226 --------DPWRRTSGVHGLR-SRRQLGMLRSLWQARDELARRRDIAPGRVLPDAAMVSA 276
Query: 215 AKQLPTTAAKLRRL 228
+ P T A L L
Sbjct: 277 VQADPRTEAALLEL 290
>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
Length = 437
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ +FDT A R+L + L ++ + G K + D
Sbjct: 122 VLHAANQDLPCLA-EVGLRPRRLFDTELAGRLLGHPKVGLGSMVENVLGFVLEKGHSAVD 180
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP++ LRYA D L+ + D + +L K E + +
Sbjct: 181 WSTRPLPEDWLRYAALDVELLIELRDALHAELERAGKLQWA-----LEEFAAILATPPKP 235
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ S +H + +QLA+V + RD +AR D S G VLP+ ++++
Sbjct: 236 PRPDPWRRTSGMHRVRTR------RQLAIVREVWLARDRLARERDLSPGRVLPDAAIVQL 289
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASE 274
A + P T A+L L ++ R+ L + A+ L E+++ V S+
Sbjct: 290 ALEAPRTPAELLALPAMRNRGARRHQSVWLRAVTR-----------ARNLPEDQLPVPSQ 338
Query: 275 ETE 277
E
Sbjct: 339 PGE 341
>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
Length = 304
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
E+ KDP+ KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 37 EILKDPSVLKVLHSPSEDIEVFQKYAGFVPSPLFDTQFALQLLG-EGNCMGFALMVKELQ 95
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G+ +K +W RPL + L YA DT YLL ++++ ++++ + D + E
Sbjct: 96 GIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIERINA----AGFFDIVINE 151
Query: 143 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
KR++ +L K++ +N++ L +LAV+ L WR A
Sbjct: 152 SELIAKKRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIKK 200
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + +VL + EIAK+ P++ LR++
Sbjct: 201 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 230
>gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
Length = 426
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 14/204 (6%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 84
EV D + V+H AD+D+ L + G+ +++DT A R+ ER +L ++ G+
Sbjct: 106 EVLSD--AEWVLHAADQDLPCLA-EIGMRPPSLYDTELAGRLANYERVNLAAMVQRLLGL 162
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
K + ADW RPLP + L YA D L+ + + L KE ++
Sbjct: 163 QLTKGHGAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVLQEQGKEGWAAE------- 215
Query: 145 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
++ R + E + + G+ + + LA V L RD IAR D + G
Sbjct: 216 --EFEYLRTV-EATPTRRDRWRRTSGIHKVR-DPRALAAVRELWTTRDQIARRRDIAPGR 271
Query: 205 VLPNRTLIEIAKQLPTTAAKLRRL 228
+LP+ ++ A P T KL L
Sbjct: 272 ILPDSAIVNAATANPDTIEKLTAL 295
>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
Length = 401
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
VVD L R+ + P L+E+F D KV H +D+ L + F +FDT AS + +
Sbjct: 58 VVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCE 116
Query: 69 LERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--- 122
NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL +Y+++
Sbjct: 117 YHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGI 176
Query: 123 ---KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
K +L+ +E EN + E + +YD LL + L
Sbjct: 177 LTAKERLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF-------PELGES 217
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
+ + + EWR+ +AR + + V+ +++++ K
Sbjct: 218 EAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 406
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 6 EDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
+++++D LK+ +GP +F+DP K+ H A DI L+RDFG N DT +
Sbjct: 55 KNYLIDPLKITNLSALGP----LFEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMIS 110
Query: 64 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
SR+L LE++SL +++ H+ V +K Q ++W +RPL + L+YA DT YL I+
Sbjct: 111 SRLLSLEQSSLSFVVEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIW 166
>gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
Length = 431
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 31/217 (14%)
Query: 49 DFGIY--------LCNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEYQNADWRVRP 99
D GI+ L N+FDT A L + + + L V+ K +DW RP
Sbjct: 127 DLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELDVHVEKAESQSDWLARP 186
Query: 100 LPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 159
L E YA +D YLL +YDI++ +LS LT+ + + C QLY KEL
Sbjct: 187 LSHEQENYAIDDVRYLLNLYDILQQQLSK---------QGLTD---KVVEDC-QLYAKEL 233
Query: 160 L------SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
+ +YL + +QLAV+ + WR+ +ARA ++ +VL + + +
Sbjct: 234 YESANIEDDATYL---AMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLKKQAVRD 290
Query: 214 IAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
+ ++PT+ +L + S + Y ++ +I +
Sbjct: 291 LVVEMPTSIKQLTQKTTMHRSIVRLYGDELIQVINQA 327
>gi|433775810|ref|YP_007306277.1| ribonuclease D [Mesorhizobium australicum WSM2073]
gi|433667825|gb|AGB46901.1| ribonuclease D [Mesorhizobium australicum WSM2073]
Length = 383
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 28/228 (12%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
++D L + + P+ R + + KV H A +DI + ++L ++ FDT A
Sbjct: 52 LIDPLSPDIDLAPFFR-LMANEAVVKVFHAARQDI-----EIIVHLGDLVPHPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ G +K + DWR RPL D+ L YA D +L+ +Y +
Sbjct: 106 AMVCGFGDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVC--RQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+L+ EN L E DV R+ Y+ E+++ L+ Q+
Sbjct: 166 NAELA-----RENRAHWLNE----EMDVLTSRETYDPH--PEDAWKR---LKMRLRKPQE 211
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
LA+V + WR+ AR D G VL + + EIA+Q P A L +L
Sbjct: 212 LAIVQAVAAWREREARERDVPRGRVLKDDAIYEIAQQGPRDAPALAKL 259
>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
Length = 451
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A+R+ ER L L H G + K + AD
Sbjct: 136 VLHAASQDLPCLA-ELGLRPRRLFDTELAARLAGFERVGLAALTEHLLGFSLEKHHSAAD 194
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ L YA D L+ + D ++ +L+ K ++ + R
Sbjct: 195 WSSRPLPESWLTYAALDVELLVELRDALEAELTRQGKAEWAAEE--------FAALVRNG 246
Query: 155 YEKELLSENSYLHIYGLQGA-GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
+ + G+ G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 ARPPRVRAEPWRRTSGIHRVRGARAQ--ARVRSLWYARDQIAARRDAAPGRVLPDSAIVA 304
Query: 214 IAK 216
A+
Sbjct: 305 AAE 307
>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
Length = 377
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 20/225 (8%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E V+D L + +GP L E+ D KV H +D+ L G +FDT A+
Sbjct: 48 ECVVIDPLAID-DLGP-LAELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAG 105
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L ER Y L+ FCGV+ K DW RPL + + YA +D YL+ Y +++
Sbjct: 106 FLG-ERAQCSYHNLVSTFCGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIE 164
Query: 124 IKLSSMPKESENSD--TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
KL S+ + + D PL + D ++ + + +QL
Sbjct: 165 SKLHSLGRTAWVRDEIRPLADPAHYRSD-----------PRAAFKRVKRVNAC--TRRQL 211
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
AV L WR+ A D +V+ + L+ + K+ P T R
Sbjct: 212 AVARELASWREQRAETRDIPRKWVMSDEVLLALCKRAPQTVEDFR 256
>gi|38233981|ref|NP_939748.1| ribonuclease [Corynebacterium diphtheriae NCTC 13129]
gi|376293406|ref|YP_005165080.1| ribonuclease D [Corynebacterium diphtheriae HC02]
gi|38200243|emb|CAE49927.1| Putative ribonuclease [Corynebacterium diphtheriae]
gi|372110729|gb|AEX76789.1| ribonuclease D [Corynebacterium diphtheriae HC02]
Length = 407
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
L ++ S+ I G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDIKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 212 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 249
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
Length = 396
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 19/241 (7%)
Query: 5 TEDFV-VDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
TED V +DTL + + P L + P KV H A +D+ F ++FDT A
Sbjct: 57 TEDVVLIDTLAPGIDLAP-LGALLAKPDCTKVFHAARQDLEIFLHIFDRLPASVFDTQVA 115
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V ++ + L+ G + +K ++ +DW RPL + YA D +L +YD +
Sbjct: 116 AMVAGFGDQVGYDSLVGAITGRSIDKAHRFSDWSARPLSKAQIAYAATDVTHLRTVYDAL 175
Query: 123 KIKLSSMPK--ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
+ +L+ + +++ LTE D R+L+EK L+ N +
Sbjct: 176 RKQLAEQDRLHWADSEQAILTEEKTFRPD-PRRLWEK-------------LKARTSNRRM 221
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
L ++ + WR+ A+ D V+ + +L+EIA P T L R+ + E M
Sbjct: 222 LGILREVTAWREQEAQNADIPRQRVIRDESLLEIAAVHPDTVEALSRIRGVTRGFAEGKM 281
Query: 241 G 241
G
Sbjct: 282 G 282
>gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
Length = 449
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 150
W RPLP+ LRYA D L + + + L K E E + + D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELREELIELLQGDGKLEYAEQEFAAILAAGLAPPRVDP 238
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ S LH + +QLA V L RD +AR D + G ++P+
Sbjct: 239 WRK---------TSGLHQI------RDRRQLAAVRELWLERDSLARKRDVAPGRLIPDSA 283
Query: 211 LIEIAKQLPTTAAKL 225
L+ AK +P+T +L
Sbjct: 284 LVAAAKAMPSTVPQL 298
>gi|376243001|ref|YP_005133853.1| ribonuclease D [Corynebacterium diphtheriae CDCE 8392]
gi|372106243|gb|AEX72305.1| ribonuclease D [Corynebacterium diphtheriae CDCE 8392]
Length = 407
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 212 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 249
I +A++ P T A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNTQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
Length = 362
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R + L ++ L L + V
Sbjct: 59 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNV 118
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
+K +W RPL D L+YA D YLL +Y I++ +L+ P E SD +
Sbjct: 119 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALA 178
Query: 145 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
K +L E++ SE +YL I LN +L+ + L +WR +A D + Y
Sbjct: 179 K-----THKLQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLALSY 229
Query: 205 VLPNRTLIEIAKQLPTTAAKL 225
++ + L ++AK P +++
Sbjct: 230 IVKSEHLWKVAKNNPRNTSEM 250
>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
Length = 386
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
VVD L R+ + P L+E+F D KV H +D+ L + F +FDT AS + +
Sbjct: 58 VVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCE 116
Query: 69 LERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--- 122
NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL +Y+++
Sbjct: 117 YHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGI 176
Query: 123 ---KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
K +L+ +E EN + E + +YD LL + L
Sbjct: 177 LTAKGRLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF-------PELGES 217
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
+ + + EWR+ +AR + + V+ +++++ K
Sbjct: 218 EAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032]
Length = 421
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 32 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 105 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 160
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 148
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 161 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 212
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+ Q SE S+ + GL QL V + RD A + D + G VL N
Sbjct: 213 HIVDQFATMTEPSETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 271
Query: 209 RTLIEIAKQLPTTAAKL 225
+ ++E+A+ LP T A+L
Sbjct: 272 KVIVEVARVLPRTPAEL 288
>gi|333892430|ref|YP_004466305.1| ribonuclease D [Alteromonas sp. SN2]
gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
Length = 385
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 34 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 91
KV+H D+ F +FD+ A+ +L L SL Y L+ C V+ +K
Sbjct: 77 KVLHSCSEDLETFLTAFNTVPTPVFDSQFAASILGLG-ASLGYAKLVELLCDVSLDKGES 135
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
DW RPL + L YA D YLL Y+ + K+ N L VY+
Sbjct: 136 RTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKI--------NEAGKLEWVYQE----I 183
Query: 152 RQLYEK---ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
QL +K ++ E +Y+ I L+ +QL V+ L WR AR D + +V
Sbjct: 184 AQLADKKRSQMPEEFAYMQIKN--NWRLSKEQLTVLQALAAWRLATARKKDMALNFVFKE 241
Query: 209 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
L E A+ +P++ + L +L I RY ++++I
Sbjct: 242 IHLYEAARLMPSSKSGLSQLHGVNPQSIRRYGETIITLI 280
>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
Length = 386
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
VVD L R+ + P L+E+F D KV H +D+ L + F +FDT AS + +
Sbjct: 58 VVDVLDERLDLSP-LQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCE 116
Query: 69 LERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--- 122
NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL +Y+++
Sbjct: 117 YHDNSVGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGI 176
Query: 123 ---KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
K +L+ +E EN + E + +YD LL + L
Sbjct: 177 LTAKERLTWFLEEMEN----IAEAFVDNYD--------SLLEGMDFF-------PELGES 217
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
+ + + EWR+ +AR + + V+ +++++ K
Sbjct: 218 EAIIARSIIEWREKVARLFNVNRNIVMHSKSVLLATK 254
>gi|358445415|ref|ZP_09156025.1| putative ribonuclease D [Corynebacterium casei UCMA 3821]
gi|356608861|emb|CCE54274.1| putative ribonuclease D [Corynebacterium casei UCMA 3821]
Length = 411
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 10/197 (5%)
Query: 32 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++ ++H A D+ L G+Y +FDT A R+L + +L Y+ F G+ +K Y
Sbjct: 87 EEWIVHAAATDLTCLAW-LGLYPGKLFDTEVAGRLLGIPNPNLAYVTEEFLGIELDKGYG 145
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
DW PL L YA D L+ + + M L E E+ E + +
Sbjct: 146 ATDWSRFPLSKAQLAYAALDVETLIDLAEEMAYDL-----EQEDKTDWAREEFAAIANHF 200
Query: 152 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
+ E + S++ G++G + LAV + E R+ A D + G ++ N +L
Sbjct: 201 GSITEP---TPRSWIDSRGIRGI-YEPEGLAVAKAVWEEREQQAYDADIAPGQIISNSSL 256
Query: 212 IEIAKQLPTTAAKLRRL 228
++IA+ +P + +LRR+
Sbjct: 257 VDIARHIPRSINQLRRI 273
>gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032]
gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032]
gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC
13032]
gi|385144007|emb|CCH25046.1| ribonuclease D [Corynebacterium glutamicum K051]
Length = 403
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 32 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 87 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 142
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 148
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 143 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 194
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+ Q SE S+ + GL QL V + RD A + D + G VL N
Sbjct: 195 HIVDQFATMTEPSETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 253
Query: 209 RTLIEIAKQLPTTAAKL 225
+ ++E+A+ LP T A+L
Sbjct: 254 KVIVEVARVLPRTPAEL 270
>gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
Length = 418
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 34/185 (18%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+V L + G+ +FDT R+ L R L ++ H+ G+ KE+ D
Sbjct: 103 ILHAATHDLVCLA-EVGLQPRVLFDTELGGRLAGLPRVGLGAMVEHYLGLQLAKEHSAVD 161
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD-----------TPLTEV 143
W +RPLP+ LRYA D L+ + + L K ++ P +
Sbjct: 162 WSIRPLPEPWLRYAALDVEVLVDLRHAVHADLERQGKAGWAAEEFQSLLQFTGPEPRVDP 221
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++R+ + R I +G A+V L WRD +AR D S G
Sbjct: 222 WRRTSGIHR---------------IRARRGT-------AIVRELWVWRDELARQRDVSPG 259
Query: 204 YVLPN 208
++P+
Sbjct: 260 RIVPD 264
>gi|418244284|ref|ZP_12870707.1| ribonuclease D [Corynebacterium glutamicum ATCC 14067]
gi|354511690|gb|EHE84596.1| ribonuclease D [Corynebacterium glutamicum ATCC 14067]
Length = 403
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 20/214 (9%)
Query: 18 QVGPYLREVFKDPT---KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLER 71
QV P L + K P ++ ++H A D+ WL G+ +FDT A R+ +
Sbjct: 71 QVRPELTQALK-PVLNGQEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDH 125
Query: 72 NSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 131
+L ++ ++ K + + DW RPLP+ L YA D LL + D+M L
Sbjct: 126 VNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL----- 180
Query: 132 ESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWR 191
+ P E + + Q +E S+ + GL QL V + R
Sbjct: 181 -DQQGKLPWAE--QEFVHIVDQFATMTEPAETSWQDLKGLSTLK-RPDQLVVAREMWLER 236
Query: 192 DVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
D A + D + G VL N+ ++E+A+ LP T A+L
Sbjct: 237 DSFAASRDLAPGKVLSNKVIVEVARVLPRTPAEL 270
>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
gi|404320174|ref|ZP_10968107.1| ribonuclease D [Ochrobactrum anthropi CTS-325]
gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
Length = 385
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 14/221 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
+VD L + + P+ R + D T KV H A +DI + + +FD+ A+ V
Sbjct: 52 LVDALAPGLDLAPFFR-LMADETIVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVCG 110
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ S + L+ G +K + DWR RPL D+ L YA D YL IY +K +L
Sbjct: 111 FGDAISYDQLVQKVTGKQIDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELE 170
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ ++ + +YD + ++++ + L +LA+V +
Sbjct: 171 KEGRSEWVNEEMAVLTSRETYD---------MHPDDAWRRVKARVRKPL---ELAIVQAV 218
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 219 AAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|407715500|ref|YP_006836780.1| ribonuclease D [Cycloclasticus sp. P1]
gi|407255836|gb|AFT66277.1| Ribonuclease D [Cycloclasticus sp. P1]
Length = 383
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 25/227 (11%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA--DRDIVWLQRDFGIYLCNMF 58
+ + T D V + + P L ++ + KV H A D++I + R G L +F
Sbjct: 45 IQIATADIVAIIDPIACDIKPLL-DILYNQNILKVFHAARQDQEIFYDLR--GKPLAPVF 101
Query: 59 DTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
DT A+ +L E+ L+ GV +K + DW RPL +E + YA +D YL
Sbjct: 102 DTQIAAPILGHPEQAGYARLVDDILGVQLSKAHSRTDWLRRPLSEEQITYAADDVIYLAK 161
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR-QLYEKELLSENSYLHIYG---LQG 173
+Y +++ +L K+ N P D+C+ LY E ++ I L+G
Sbjct: 162 LYPLLENQLKE--KDRLNWLAPAFA------DLCKPSLYSNP--PELAWKRIRAAKRLKG 211
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
L+A Q L EWR+ +A+ D G+++ + LIE+AK PT
Sbjct: 212 GALSALQ-----KLAEWREDLAQQKDIPRGWIIKDDILIEVAKLKPT 253
>gi|453363937|dbj|GAC80252.1| ribonuclease D [Gordonia malaquae NBRC 108250]
Length = 404
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + P + +V P + ++H AD+D+ L R+ G ++FDT A R+L
Sbjct: 75 FLLDPIDHPDALTPVI-DVLTGP--QWILHAADQDLPCL-RELGFVCESVFDTELAGRLL 130
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ + +L ++ F + K + ADW RPLPD+ L YA D L+ + D + L
Sbjct: 131 NVPKVNLAAMVAGFLHLGLAKGHGAADWSQRPLPDDWLNYAALDVEVLVELRDAVSAALR 190
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+E+ + V R + + + N+ ++ AVV L
Sbjct: 191 EAGRETWAAQE-FAAVLARPAPEPKPDRWRRTSNLNTL----------KTTREYAVVREL 239
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R+ +AR D + VLP+ ++ AK P A+L L
Sbjct: 240 WTEREEVARRRDVAPSRVLPDAAIVNAAKSAPRNTAELTSL 280
>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
Length = 372
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 24/248 (9%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D LK+ G LR + D KV+H D+ + G+ + DT +A+ +L
Sbjct: 53 WLIDPLKVTDLDG--LRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALL 110
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK-I 124
+ L Y L+ GV +K +DW RPL D YA D L+ + I+K +
Sbjct: 111 G-KGFGLGYRALIELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDL 169
Query: 125 KLSS--MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
LS M + + + + +R D+ R++ + L+ +QL
Sbjct: 170 ALSQGRMEWILDEGEEAIRLLNERDRDIYRRVK----------------SASRLSPRQLD 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 242
+ LCEWR+ +AR+ D+ G+++ ++ I IA+ +P L L S I +
Sbjct: 214 ALRRLCEWREALARSVDKPRGWIVEDKACIAIAQSMPADIEALTDLDVLPASVIRKQGDT 273
Query: 243 VLSIIKNS 250
+L+ ++ +
Sbjct: 274 LLACVRGA 281
>gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379]
Length = 384
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 74 ILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGK---------LEWAREEFDAIAA- 182
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + G+ +Q+AVV L RD +A+ D S G VL + ++E
Sbjct: 183 APPAPPRKDPWRRTSGMHKV-RRRRQMAVVRELWTTRDQVAQRRDVSPGKVLGDAAIVEA 241
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A LP L L H R +
Sbjct: 242 ALALPVDVQALTALPGFGHRMGRRQL 267
>gi|376248685|ref|YP_005140629.1| ribonuclease D [Corynebacterium diphtheriae HC04]
gi|376251484|ref|YP_005138365.1| ribonuclease D [Corynebacterium diphtheriae HC03]
gi|376257299|ref|YP_005145190.1| ribonuclease D [Corynebacterium diphtheriae VA01]
gi|372112988|gb|AEX79047.1| ribonuclease D [Corynebacterium diphtheriae HC03]
gi|372115253|gb|AEX81311.1| ribonuclease D [Corynebacterium diphtheriae HC04]
gi|372119816|gb|AEX83550.1| ribonuclease D [Corynebacterium diphtheriae VA01]
Length = 407
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 20/221 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
L +++S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQHSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 212 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 249
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|411003023|ref|ZP_11379352.1| ribonuclease D [Streptomyces globisporus C-1027]
Length = 384
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L RD G+ ++FDT A R+ R L ++ + G K + D
Sbjct: 74 ILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAGFPRVGLGAMVENVLGYALEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E + +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLIDLRDALEEELERQGK---------LEWAREEFDAIAA- 182
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + G+ +Q+AVV L RD +A+ D S G VL + ++E
Sbjct: 183 APPAPPRKDPWRRTSGMHKV-RRRRQMAVVRELWTTRDQVAQRRDVSPGKVLGDAAIVEA 241
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
A LP L L H R +
Sbjct: 242 ALALPADVQALTALPGFGHRMGRRQL 267
>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
Length = 385
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 24/226 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM-----FDTGQA 63
+VD L + + P+ R + D KV H A +DI + +L N+ FDT A
Sbjct: 52 LVDALAPGLDLAPFFR-LMADEEIVKVFHAARQDI-----EIVFHLGNLIPSPVFDTQVA 105
Query: 64 SRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM 122
+ V + S + L+ + +K + DWR RPL D+ L YA D YL IY +
Sbjct: 106 AMVCGFGDAISYDQLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYL 165
Query: 123 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
K +L + ++ +++YD L ++++ + L +LA
Sbjct: 166 KEELQKEGRSEWVNEEMAVLTARQTYD---------LHPDDAWRRVKARVRKPL---ELA 213
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+V + WR+ AR + G ++ + T+ EIA+Q P A L RL
Sbjct: 214 IVQAVAAWREREARERNVPRGRIIKDDTIAEIAQQQPRDAEALGRL 259
>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R + L ++ L L + V
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
+K +W RPL D L+YA D YLL +Y I++ +L+ P E SD +
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALA 196
Query: 145 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
K +L E++ SE +YL I LN +L+ + L +WR +A D + Y
Sbjct: 197 K-----THKLQERD--SEKAYLDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLALSY 247
Query: 205 VLPNRTLIEIAKQLPTTAAKL 225
++ + L ++AK P +++
Sbjct: 248 IVKSDNLWKVAKNNPRNTSEM 268
>gi|417842935|ref|ZP_12489013.1| Ribonuclease D [Haemophilus haemolyticus M21127]
gi|341950811|gb|EGT77396.1| Ribonuclease D [Haemophilus haemolyticus M21127]
Length = 399
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ +P K++H D++ ++F M DT +R L L ++ L L +
Sbjct: 95 ELLVNPNVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLN 154
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE---SENSDTPL 140
V +K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 155 VEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWERAVRDDCELAL 214
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 200
++ +K L E++ SE +YL I LN +L+ + L +WR + D
Sbjct: 215 SKTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVGIERDL 262
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKL 225
+ Y++ + L ++AK P +++
Sbjct: 263 ALSYIVKSDNLWKVAKNNPRNTSEM 287
>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R + L ++ L L + +
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGASAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE---SENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E S++ + L+
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALS 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNISEM 268
>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
Length = 382
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ ++F M DT +R L L ++ L L + V
Sbjct: 77 LLANPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
gi|386265214|ref|YP_005828706.1| Ribonuclease D [Haemophilus influenzae R2846]
gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R + L ++ L L + +
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPHPMIDTQIMARFIGLGASAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L+
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALS 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN+ +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNSLELSRLRILSQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G KE+ AD
Sbjct: 120 ILHAASQDLPCLS-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFGLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L + + + L + K E ++ + R
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLTELREELIELLQADGK-LEYAEQEFAAILAAGLPPAR-- 235
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + S LH + +QLA V L RD +A+ D + G ++P+ L+
Sbjct: 236 --VDPWRKTSGLHQIR------DRRQLAAVRELWLERDSLAQKRDVAPGRLIPDSALVAA 287
Query: 215 AKQLPTTAAKL 225
AK +P+T +L
Sbjct: 288 AKAMPSTVPQL 298
>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
Length = 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|392545413|ref|ZP_10292550.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
rubra ATCC 29570]
Length = 377
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 22/231 (9%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L + +D KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 66 LWHLLRDEQIVKVLHSPSEDIEVFQKFAGFVPAPLFDTQFALQLLG-EGNCVGFANMVKM 124
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 140
V +K DW RPL L YA D YLL Y+ + K++ E SD +
Sbjct: 125 MLDVELDKSMSRTDWLKRPLQASQLEYAAADVFYLLPCYESLSKKIA----EKGLSDIVI 180
Query: 141 TE----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 196
+E KR++ + ++YL++ L + LAV+ L WR A
Sbjct: 181 SESQLIAQKRAFR-----------TPDAYLYLSVKNVWQLKPRDLAVLRELASWRQSKAE 229
Query: 197 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSII 247
+ + +VL + ++EIAK+ P++ LR + + + R +L+ I
Sbjct: 230 KKNLALNFVLKEQNMVEIAKRRPSSLNSLRNVPGVEQMEVNRSGKEILACI 280
>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
Length = 414
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 1 MSLRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+ +R ED F++DT L P L + ++H +D+ L R G+ +
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSAL 123
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT A+R++ LER L ++ G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEIAARLIGLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 171
+Y + +L M + ++ +Q + L + + I G
Sbjct: 184 LYYRLSKRLDEMGR----------------WEWAQQEFAYALSVTPPGPKPDRWRSIPG- 226
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
G + + LAV+ L E R+ IA+ D S G ++ N L+ A P
Sbjct: 227 AGKIRSRRGLAVLKALWETRESIAQRIDLSPGRLVRNAALVRAASNPP 274
>gi|408375119|ref|ZP_11172795.1| ribonuclease D [Alcanivorax hongdengensis A-11-3]
gi|407765000|gb|EKF73461.1| ribonuclease D [Alcanivorax hongdengensis A-11-3]
Length = 357
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 83
+F D T VMH D+ + G Y + DT Q + L E L Y ++ G
Sbjct: 68 LFADHTL--VMHACSEDLEAIAAFSGAYPAAIEDT-QIAAALSGEDMQLGYQKIVQMLLG 124
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V K +W RPL DE L YA +D YL + I++ +L ++ + E
Sbjct: 125 VELPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVTAILRERLDTLGRRHW-----WQEE 179
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
+R D R + L E ++ + G A L Q LAV+A L WRD +AR D
Sbjct: 180 CQRLLDQAR----RPSLPEKAWRQVKG--AAYLQGQSLAVLAELAAWRDAMARQRDLPKS 233
Query: 204 YVLPNRTLIEIA 215
+V+ + L+E+A
Sbjct: 234 FVVKDAQLLELA 245
>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
Length = 399
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|380302273|ref|ZP_09851966.1| ribonuclease D [Brachybacterium squillarum M-6-3]
Length = 428
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 32 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQ 91
++ V+H A +D+ L + G++ +FDT A+R+L + + L ++ G++ KE+
Sbjct: 114 REWVLHAAVQDLPSLA-ELGLHPGRLFDTELAARLLGMSKVGLGAVVEETLGLSLAKEHS 172
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV-YKRSYDV 150
ADW RPLP L YA D L+ + D ++ +L +E+ + L E ++R+ +V
Sbjct: 173 AADWSKRPLPAAWLVYAALDVEVLVQVRDELERRL----REAGKHEWALAEFEHERTREV 228
Query: 151 CRQLYEKELLSENSYLHIYGLQGAG--LNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
GL G G + +QLA + RD IA +D S V+ +
Sbjct: 229 ----------GPTRSADWRGLHGIGSLRSTRQLAAARAMWTARDEIAAREDLSPHRVIRD 278
Query: 209 RTLIEIAKQLP 219
R ++ K+ P
Sbjct: 279 REIVAAVKEAP 289
>gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22]
gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 397
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ + +FDT A R+ R L ++ G K + D
Sbjct: 84 VLHAATQDLPCL-REIDMVPTRIFDTELAGRLAGFPRVGLGAMVEGVLGYVLEKGHSAVD 142
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV + E RD IA+ D S G VL + ++E
Sbjct: 194 PPAE-PRKDPWRRTSGMHKV-RRRRQMAVVREMWEARDRIAQRRDVSPGKVLSDAAIVEA 251
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
+ LP A L L H R +
Sbjct: 252 SLALPVNATALAALNGFGHRMGRRQL 277
>gi|444306267|ref|ZP_21142036.1| ribonuclease D [Arthrobacter sp. SJCon]
gi|443481414|gb|ELT44340.1| ribonuclease D [Arthrobacter sp. SJCon]
Length = 444
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L + G++ +FDT A+R+ L R L ++ G + KE+ AD
Sbjct: 120 ILHAATQDLPCLL-ELGMWPDKLFDTELAARLAGLPRVGLAAVIEQLLGFSLAKEHSAAD 178
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 150
W RPLP+ LRYA D L + + + L + K E E + V D
Sbjct: 179 WSTRPLPEPWLRYAALDVEVLSELREELVELLEADGKLGYAEQEFAAILAAGVAPPRVDP 238
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ S LH + +QLA V L RD +A+ D + G ++P+
Sbjct: 239 WRK---------TSGLHQI------RDRRQLAAVRELWLERDSLAQKRDVAPGRLIPDSA 283
Query: 211 LIEIAKQLPTTAAKL 225
L+ AK +P T +L
Sbjct: 284 LVAAAKAMPATVPQL 298
>gi|414071398|ref|ZP_11407368.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
gi|410806239|gb|EKS12235.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
Length = 376
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
++ KDPT KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 QILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELL 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--KIKLSSMPKESENSDTPL 140
G+ +K +W RPL + L YA DT +LL + ++ +IK + + N +
Sbjct: 127 GIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDIVINESELI 186
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 200
KR++ +L K++ +N++ L +LAV+ L WR A +
Sbjct: 187 AN--KRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIRKNL 233
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ +VL + EIAK+ P++ LR++
Sbjct: 234 ALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|359427082|ref|ZP_09218157.1| ribonuclease D [Gordonia amarae NBRC 15530]
gi|358237695|dbj|GAB07739.1| ribonuclease D [Gordonia amarae NBRC 15530]
Length = 409
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L R+ G +FDT A R+L + +L ++ F G+ +K + AD
Sbjct: 92 VLHAADQDLPCL-REAGFTCTALFDTELAGRLLGRPKVNLATMVEEFLGLGLSKGHGAAD 150
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + L YA D LL + D L+ K+ + V R R
Sbjct: 151 WSRRPLPHDWLVYAALDVEVLLELRDATAAALTDAGKDDWAREE-FAAVLARPAPAARV- 208
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + G+ +A+ LA V L R+ +A+ D + G +LP+ ++
Sbjct: 209 --------DRWRRTAGIHTVK-SARGLAAVRELWLTREEVAQRRDIAPGRILPDSAIVTA 259
Query: 215 AKQLPTTAAKLRRL 228
A P T L RL
Sbjct: 260 ASADPATVKDLTRL 273
>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
Length = 396
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHF 81
L V DP + V+H A +D+ ++R + + +FDT A+ + LL
Sbjct: 76 LAAVLADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFAGYGAQTGYGNLLGAA 135
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
G K W RPL +E L YA ED +LL + D + KLS+ +
Sbjct: 136 LGQRVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGR---------- 185
Query: 142 EVYKRSYDVCRQLYEK--ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 199
+ + + CR++ E E E +Y + + L+ + AV + WR+ A+ +D
Sbjct: 186 --LQWAQEECRRMDEATDERDPETAYERLP--RSGQLDPRARAVAREVAAWRERTAQQED 241
Query: 200 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER 238
+ G +LP+ L+EIAK+ P++ +L ++ ++ R
Sbjct: 242 KPVGTILPDPALVEIAKRKPSSPRELEQIRGLHGGHLRR 280
>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
Length = 399
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
gi|1173094|sp|P44442.1|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
Length = 399
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|409040136|gb|EKM49624.1| hypothetical protein PHACADRAFT_214164 [Phanerochaete carnosa
HHB-10118-sp]
Length = 431
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 104 MLRYAREDTHYLLYIYDIMKIKL-------------SSMPKESENS-----DTPLTEVYK 145
ML YAR DTH+LL+IYD ++ L +S P S +S + EV
Sbjct: 1 MLNYARSDTHFLLFIYDHLRNALLDRAQSRAQSPSTASEPAPSTSSAVNPSHALVREVLS 60
Query: 146 RSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCE------------WRDV 193
RS + ++ E+E+ G + A++AG E WRD
Sbjct: 61 RSEETALRVLEREVYDAEGGSGPAGWDTLARKWNKGALMAGERETVRRRIYKAVHAWRDR 120
Query: 194 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQN 253
AR +DEST YVLPN L +A+Q P A L L + + R + I+ +
Sbjct: 121 AAREEDESTRYVLPNHYLFVLAEQPPADIAGLLSLFQHVPPVVRRRAKELFEAIRQAAAV 180
Query: 254 AANFEVI 260
++ V+
Sbjct: 181 SSEESVV 187
>gi|345430292|ref|YP_004823412.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
Length = 383
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 10/205 (4%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ +D K++H + D++ ++F M DT +R L ++ L L+ H+ G
Sbjct: 76 ELLRDQLVTKILHACNEDLLVFLQEFDALPQPMMDTQIMARFLGFANSAGLAKLVLHYLG 135
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
+ +K +W RPL L+YA D YLL +Y M+I+L+ P D +
Sbjct: 136 IEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVIDDCQLAI 195
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
K S +L +++ +YL I + LN +LA + L +WR A A + +
Sbjct: 196 SKTS-----KLDDRD--PNKAYLDIPNVW--KLNPLELARLQLLAKWRQETAIARNLALS 246
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRL 228
YV+ + L ++AK P +++ L
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLAL 271
>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
Length = 396
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V H AD+D+ ++R G +FDT A L SL LL + GV+ +K + +D
Sbjct: 93 VFHAADQDLEIIERAVGARPRRIFDTQVAGGFLGAGHASLGALLDRYLGVSISKAERTSD 152
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPL L YA D YL + D + +L + +E V +R D+
Sbjct: 153 WLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMARLVERRRRDI---- 208
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E EL ++ I +G +++A A + WR+ A+ DD VL + + +
Sbjct: 209 -EPEL----AWTRIRECRGLDPTGRRIA--ASVAAWRERTAQRDDVPVRTVLSDLAVASV 261
Query: 215 AKQLPTTAAKLR 226
AK P++ +LR
Sbjct: 262 AKARPSSLTELR 273
>gi|375293272|ref|YP_005127811.1| ribonuclease D [Corynebacterium diphtheriae INCA 402]
gi|376254487|ref|YP_005142946.1| ribonuclease D [Corynebacterium diphtheriae PW8]
gi|376284905|ref|YP_005158115.1| ribonuclease D [Corynebacterium diphtheriae 31A]
gi|376287914|ref|YP_005160480.1| ribonuclease D [Corynebacterium diphtheriae BH8]
gi|371578420|gb|AEX42088.1| ribonuclease D [Corynebacterium diphtheriae 31A]
gi|371582943|gb|AEX46609.1| ribonuclease D [Corynebacterium diphtheriae INCA 402]
gi|371585248|gb|AEX48913.1| ribonuclease D [Corynebacterium diphtheriae BH8]
gi|372117571|gb|AEX70041.1| ribonuclease D [Corynebacterium diphtheriae PW8]
Length = 407
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 212 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 249
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|375291066|ref|YP_005125606.1| ribonuclease D [Corynebacterium diphtheriae 241]
gi|376245898|ref|YP_005136137.1| ribonuclease D [Corynebacterium diphtheriae HC01]
gi|371580737|gb|AEX44404.1| ribonuclease D [Corynebacterium diphtheriae 241]
gi|372108528|gb|AEX74589.1| ribonuclease D [Corynebacterium diphtheriae HC01]
Length = 407
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + + MK+ L + K E +K+ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHKQE---CAHL 196
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INASSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 212 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 249
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|399527748|ref|ZP_10767435.1| 3'-5' exonuclease [Actinomyces sp. ICM39]
gi|398361684|gb|EJN45426.1| 3'-5' exonuclease [Actinomyces sp. ICM39]
Length = 414
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 1 MSLRTED---FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNM 57
+ +R ED F++DT L P L + ++H +D+ L R G+ ++
Sbjct: 70 VQIRREDVGTFLIDTHAL-----PDLSVLQPGVEDVWLLHDCLQDLPNL-RQVGLRPSSL 123
Query: 58 FDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLY 117
FDT A+R++ LER L + G+ K++Q +DW VRPLP E LRYA D L
Sbjct: 124 FDTEIAARLIGLERFGLAAVAEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTE 183
Query: 118 IYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL------SENSYLHIYGL 171
+Y + +L M + ++ +Q + L + + + G
Sbjct: 184 LYYRLSKRLDQMGR----------------WEWAQQEFAYALSVTPPGPKADRWRSVPG- 226
Query: 172 QGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
G + + LAV+ L E R+ IA+ D S G ++ N L+ A P
Sbjct: 227 AGKIRSRRGLAVLKALWETRESIAQRIDLSPGRLVRNAALVRAASNPP 274
>gi|386390385|ref|ZP_10075174.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
gi|385693110|gb|EIG23765.1| ribonuclease D [Haemophilus paraphrohaemolyticus HK411]
Length = 372
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 14/231 (6%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 84
+ D KV+H D+ + F + DT + L L + L+ H+ +
Sbjct: 73 LLADQNVIKVLHACSEDLEVFECSFNQLPTPLVDTQVMANFLNLGISVGFAKLVLHYLDI 132
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
+K DW RPL + L+YA D YLL IY M+ +L+ ++ ++ +
Sbjct: 133 ELDKGASRTDWLARPLSETQLQYATADVWYLLPIYQKMQTELAQTNWQNAVNEECSAFLT 192
Query: 145 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
KR E+E + +Y+ I L QQLAV+ L +WR AR+ + + +
Sbjct: 193 KR---------EREDDLDKAYIKISN--AWRLEPQQLAVLKLLAKWRVEEARSRNLALNF 241
Query: 205 VLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 255
V+ +L EIA+ LP ++L + + R+ +L +++ M A
Sbjct: 242 VVKEASLYEIARILPKNPSQLLDFMHPNE--VRRHGKKILRLVEQGMNTPA 290
>gi|378696574|ref|YP_005178532.1| ribonuclease D [Haemophilus influenzae 10810]
gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
Length = 382
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ ++F M DT +R L L ++ L L + V
Sbjct: 77 LLSNPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I + LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPNVW--KLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|407700585|ref|YP_006825372.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
gi|407249732|gb|AFT78917.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
Length = 385
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 34 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 91
KV+H DI F +FDT A +L + SL Y L+ C ++ +K
Sbjct: 77 KVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMG-PSLGYAKLVELLCDISLDKGES 135
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY-----KR 146
DW RPL + L YA D YLL Y +L+S +E+ E+ KR
Sbjct: 136 RTDWLARPLREAQLSYAANDVLYLLPCYQ----QLASKVQEAGKVHWIYQEIALLVDKKR 191
Query: 147 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 206
+ ++ + +YL I LN++QL V+ L WR AR D + +V
Sbjct: 192 A----------QMPEDFAYLSIKN--NWRLNSEQLTVLQALAAWRLNTARKKDLALNFVF 239
Query: 207 PNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L E A++L + + L R+ H + RY ++++I+ +
Sbjct: 240 KEGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEA 283
>gi|386843175|ref|YP_006248233.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103476|gb|AEY92360.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796466|gb|AGF66515.1| ribonuclease D [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 384
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 12/185 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 74 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAGFPRVGLGAMVEGVLGFVLEKGHSAVD 132
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E +D
Sbjct: 133 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWALEEFDAIASA 183
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +QLAVV L + RD IA+ D S G VL + ++E
Sbjct: 184 PPAE-PRKDPWRRTSGMHKV-RRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVEA 241
Query: 215 AKQLP 219
A LP
Sbjct: 242 ALALP 246
>gi|418295976|ref|ZP_12907820.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539408|gb|EHH08646.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
Length = 386
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ T + +VD L + + P L E+ +P KV H A +DI + G+ +FDT
Sbjct: 42 MASPTLEVLVDPLAKGIDLTP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDT 100
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ V + S + L+ V +K + DW RPL ++ L YA D +L +Y
Sbjct: 101 QVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVY 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+K +L E E LTE D+ ++ ++++L L+
Sbjct: 161 LALKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPT 208
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 209 ELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
Length = 438
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A++D+ L + G+ +FDT A+R+ ER L L G + K + AD
Sbjct: 128 VLHAANQDLPCLA-ELGLRPRRLFDTELAARLAGFERVGLAALTEQLLGYSLEKHHSAAD 186
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE--SENSDTPLTEVYKRSYDVCR 152
W RPLP+ L YA D L + D + +L+ K +E L + R V
Sbjct: 187 WSSRPLPESWLTYAALDVELLTDLRDALDAELTRQGKSQWAEEEFAALVQAGTRPPRVRA 246
Query: 153 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + + S +H + G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 EPWRR-----TSGIH----RVRGARAQ--ARVRSLWYARDQIAARRDSAPGRVLPDSAIV 295
Query: 213 EIAK 216
A+
Sbjct: 296 AAAE 299
>gi|359452611|ref|ZP_09241954.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
gi|358050322|dbj|GAA78203.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
Length = 376
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
++ KDPT KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 QILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELL 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--KIKLSSMPKESENSDTPL 140
G+ +K +W RPL + L YA DT +LL + ++ +IK + + N +
Sbjct: 127 GIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDIVINESELI 186
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 200
KR++ +L K++ +N++ L +LAV+ L WR A +
Sbjct: 187 AN--KRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIRKNL 233
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ +VL + EIAK+ P++ LR++
Sbjct: 234 ALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
Length = 383
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 10/205 (4%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ +D K++H + D++ ++F M DT +R L ++ L L+ H+ G
Sbjct: 76 ELLRDQQVTKILHACNEDLLVFLQEFDALPQLMMDTQIMARFLGFANSAGLAKLVLHYLG 135
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
+ +K +W RPL L+YA D YLL +Y M+I+L+ P D +
Sbjct: 136 IEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVIDDCQLAI 195
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
K S +L +++ +YL I + LN +LA + L +WR A A + +
Sbjct: 196 SKTS-----KLDDRD--PNKAYLDIPNVW--KLNPLELARLQLLAKWRQETAMARNLALS 246
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRL 228
YV+ + L ++AK P +++ L
Sbjct: 247 YVVKSDNLWKVAKNNPRNTSEMLAL 271
>gi|386852024|ref|YP_006270037.1| ribonuclease D [Actinoplanes sp. SE50/110]
gi|359839528|gb|AEV87969.1| ribonuclease D [Actinoplanes sp. SE50/110]
Length = 411
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A+R+ ER L L H G + K + AD
Sbjct: 98 VLHAASQDLPCLA-ELGMKPRRLFDTELAARLAGFERVGLAALTEHLLGYSLEKHHSAAD 156
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCR 152
W RPLP+ L YA D L + D++ +L K ++ L R V
Sbjct: 157 WSTRPLPESWLTYAALDVELLTDLRDLLATELDKQGKAGWAAEEFASLVASADRPPRVRP 216
Query: 153 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + S +H + G AQ + V L RD IA D + G VLP+ ++
Sbjct: 217 DPWRR-----TSGIH----RVRGARAQ--SRVRALWYARDAIAARKDSAPGRVLPDSAIV 265
Query: 213 EIAKQLP 219
A+ P
Sbjct: 266 AAAEADP 272
>gi|397670259|ref|YP_006511794.1| putative ribonuclease D [Propionibacterium propionicum F0230a]
gi|395143550|gb|AFN47657.1| putative ribonuclease D [Propionibacterium propionicum F0230a]
Length = 403
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 10/184 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ D GI +FDT A R+L L LL G+ K + +
Sbjct: 93 IIHAASQDLP-CMLDVGIRPPALFDTELAGRLLGAPSVGLAALLETKLGIRLRKAHSADN 151
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D YL+ + D+++ +L + + + + R
Sbjct: 152 WATRPLPTSWLIYAALDVDYLIELADLLRTELVAGNR--------IAWAEEEFIHTLRVF 203
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
+ + G+QG + +QLAV L + RD++AR D +L + +IE
Sbjct: 204 STPPAPRREPWRRLSGIQGLK-HPRQLAVARALWQERDLVARRRDRPPSRILADAAIIEF 262
Query: 215 AKQL 218
A +
Sbjct: 263 ASGI 266
>gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R]
gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 403
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 32 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 87 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 142
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 148
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 143 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 194
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+ Q +E S+ + GL QL V + RD A + D + G VL N
Sbjct: 195 HIVDQFATMTEPAETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 253
Query: 209 RTLIEIAKQLPTTAAKL 225
+ ++E+A+ LP T A+L
Sbjct: 254 KVIVEVARVLPRTPAEL 270
>gi|452948511|gb|EME53989.1| ribonuclease D [Amycolatopsis decaplanina DSM 44594]
Length = 421
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + L Q+ P L EV + + V+H A +D+ L + + ++FDT A R+
Sbjct: 86 FLIDPIPLEGQLEP-LAEVLNN--AEWVLHAASQDLPCLA-ELDLRPKSLFDTELAGRLA 141
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER +L L+ G K + ADW RPLP + L YA D L+ + + ++ L+
Sbjct: 142 GYERVALGTLVELLLGYQLEKGHSAADWSKRPLPVDWLNYAALDVELLIELREKLEADLA 201
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ K E ++ ++ R + G+ +A+ LA V L
Sbjct: 202 AQGK---------LEWAQQEFEAVRT-APPPAPRAEPWRRTSGVHKIR-SARGLAAVREL 250
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ RD +AR D + +LP+ +I P T +L+ L
Sbjct: 251 WQARDELARKRDRAPSRILPDSAIINAVTADPKTVEQLQAL 291
>gi|433657124|ref|YP_007274503.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
gi|432507812|gb|AGB09329.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
Length = 388
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|453077526|ref|ZP_21980272.1| ribonuclease D [Rhodococcus triatomae BKS 15-14]
gi|452759201|gb|EME17574.1| ribonuclease D [Rhodococcus triatomae BKS 15-14]
Length = 399
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ + D G+ ++FDT A R+ +R L ++ G+ K + D
Sbjct: 75 VLHSADQDLPGMA-DLGLRPASLFDTELAGRLAGFDRVGLAAVVERLLGLELQKGHGADD 133
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK----ESENSDTPLTEVYKRSYDV 150
W RPLP+ L YA D L+ + D M +L S K E L K D
Sbjct: 134 WSRRPLPESWLNYAALDVEVLVELRDAMAAELDSQGKTDWAAQEFEHIRLAGPPKPKPDR 193
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R+ + I+ L+ + +QLA V L RD IA D + G +LP+
Sbjct: 194 WRRTSQ-----------IHSLK----SPRQLAAVRELWRARDEIAARRDIAPGRILPDSA 238
Query: 211 LIEIAKQLPTTAAKLRRL 228
+ A P + LR L
Sbjct: 239 ITAAAAANPMSVDALRAL 256
>gi|406597337|ref|YP_006748467.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407684351|ref|YP_006799525.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407688279|ref|YP_006803452.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406374658|gb|AFS37913.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407245962|gb|AFT75148.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407291659|gb|AFT95971.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 385
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 34 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 91
KV+H DI F +FDT A +L + SL Y L+ C ++ +K
Sbjct: 77 KVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMG-PSLGYAKLVELLCDISLDKGES 135
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY-----KR 146
DW RPL + L YA D YLL Y +L+S +E+ E+ KR
Sbjct: 136 RTDWLARPLREAQLSYAANDVLYLLPCYQ----QLASKVQEAGKVHWIYQEIALLVDKKR 191
Query: 147 SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL 206
+ ++ + +YL I LN++QL V+ L WR AR D + +V
Sbjct: 192 A----------QMPEDFAYLSIKN--NWRLNSEQLTVLQALAAWRLNTARKKDLALNFVF 239
Query: 207 PNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L E A++L + + L R+ H + RY ++++I+ +
Sbjct: 240 KEGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEA 283
>gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2]
gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2]
Length = 357
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 24/203 (11%)
Query: 20 GPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--L 77
GP L VF++ T VMH D+ + G Y + DT Q + L E Y +
Sbjct: 62 GPTLLPVFQNHTL--VMHACSEDLEAIATFTGQYPAAIEDT-QIAAALSGEDMQWGYQKV 118
Query: 78 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD 137
+ GV+ K +W RPL DE L YA +D YL + I+ +L + + + +
Sbjct: 119 VQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEE 178
Query: 138 TPLTEVYKRSYDVCRQLYEK---ELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDV 193
C +L ++ ++L ++++ ++ +GAG L + LAV+A L WRD
Sbjct: 179 E------------CARLLKQARSQVLPQDAWRNV---KGAGLLQGESLAVLAALAPWRDQ 223
Query: 194 IARADDESTGYVLPNRTLIEIAK 216
+AR D +VL + L+++A+
Sbjct: 224 MARERDLPKSFVLKDAQLLDLAR 246
>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
Length = 372
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
Length = 354
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|417971554|ref|ZP_12612477.1| ribonuclease D [Corynebacterium glutamicum S9114]
gi|344044036|gb|EGV39717.1| ribonuclease D [Corynebacterium glutamicum S9114]
Length = 403
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 32 KKKVMHGADRDI---VWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANK 88
++ ++H A D+ WL G+ +FDT A R+ + +L ++ ++ K
Sbjct: 87 QEWIIHAASTDLPSLAWLDLHPGL----LFDTELAGRLAGFDHVNLAAMVEQIFDLHLLK 142
Query: 89 EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSY 148
+ + DW RPLP+ L YA D LL + D+M L + P E +
Sbjct: 143 GHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL------DQQGKLPWAE--QEFV 194
Query: 149 DVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
+ Q +E S+ + GL QL V + RD A + D + G VL N
Sbjct: 195 HIVDQFATMTEPAETSWQDLKGLSTLK-RPDQLVVAREMWLERDSFAASRDLAPGKVLSN 253
Query: 209 RTLIEIAKQLPTTAAKL 225
+ ++E+A+ LP T A+L
Sbjct: 254 KVIVEVARVLPRTPAEL 270
>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|417320410|ref|ZP_12106956.1| ribonuclease D [Vibrio parahaemolyticus 10329]
gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
Length = 388
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
Length = 377
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 8 FVVDTLKLRVQVGPY--LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
F++D L +G + L E+ ++ KV+H D+ L R G +FDT A+
Sbjct: 55 FLIDPLL----IGNWQPLAELLENSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAG 110
Query: 66 VLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
L L S+ Y L+ G++ K +DW RPL D + YA ED +L ++ +++
Sbjct: 111 YLNLG-FSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFTVLR 169
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
P+ S++ + E R+ E L + L L QQLAV
Sbjct: 170 ------PRLSDDKYAWVLEDGAELVAALRREVEPATLYRDVKL------AWKLAPQQLAV 217
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ LC WR+ AR+ D VL +L IAK P+ + L ++
Sbjct: 218 LRELCAWRERTARSRDVPRNRVLKEHSLWPIAKNQPSNLSALAKV 262
>gi|153840116|ref|ZP_01992783.1| ribonuclease D, partial [Vibrio parahaemolyticus AQ3810]
gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
Length = 341
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|456387927|gb|EMF53417.1| exonuclease [Streptomyces bottropensis ATCC 25435]
Length = 399
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L R+ + +FDT A R+ R L ++ G K + D
Sbjct: 84 VLHAATQDLPCL-REIDMVPTRIFDTELAGRLAGFPRVGLGAMVEGVLGYVLEKGHSAVD 142
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K E ++ +D
Sbjct: 143 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGK---------LEWARQEFDAIASA 193
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E ++ + G+ +Q+AVV + E RD IA+ D S G VL + ++E
Sbjct: 194 PPAE-PRKDPWRRTSGMHKV-RRRRQMAVVREMWEARDRIAQRRDVSPGKVLSDAAIVEA 251
Query: 215 AKQLPTTAAKLRRLLKSKHSYIERYM 240
+ LP A L L H R +
Sbjct: 252 SLALPVNAQALAALNGFGHRMGRRQL 277
>gi|359441689|ref|ZP_09231579.1| ribonuclease D [Pseudoalteromonas sp. BSi20429]
gi|358036517|dbj|GAA67828.1| ribonuclease D [Pseudoalteromonas sp. BSi20429]
Length = 376
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
E+ KDP KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 EILKDPAVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELQ 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G+ +K +W RPL + L YA DT YLL ++++ ++++ + D + E
Sbjct: 127 GIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIDRINA----AGFFDIVINE 182
Query: 143 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
KR++ +L K++ +N++ L +LAV+ L WR A
Sbjct: 183 SELIAKKRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIKK 231
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + +VL + EIAK+ P++ LR++
Sbjct: 232 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|431805515|ref|YP_007232416.1| ribonuclease D [Liberibacter crescens BT-1]
gi|430799490|gb|AGA64161.1| Ribonuclease D [Liberibacter crescens BT-1]
Length = 383
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 41/240 (17%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
++D L + + + + +P+ KV H A +DI + +FDT A+ V
Sbjct: 51 IIIDPLDSEINLSAFFN-LMLNPSIVKVFHAARQDIEIIFHMSRQIPTPIFDTQVAAMVC 109
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
R S+ Y L+ G +K + +W RPL + L YA D YL IY I+K +
Sbjct: 110 GF-RESISYDTLVRKLLGQQIDKSSRFTNWHQRPLSSKQLDYALADVTYLCEIYTILKAE 168
Query: 126 LS------------SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQG 173
L S+ + + + P E++KR + ++
Sbjct: 169 LEQTKRSEWLKEEMSILENPQTYNLPPEEIWKRIKNRLKK-------------------- 208
Query: 174 AGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
Q+LAV+ + WR+ AR+ + ++ + TLIEIA+Q P T+ + + L+S H
Sbjct: 209 ----PQELAVLKYITTWREHEARSQNVPRNRIIKDETLIEIAQQQPRTSKDIEK-LRSIH 263
>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
Length = 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPFELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|385788545|ref|YP_005819654.1| ribonuclease D [Erwinia sp. Ejp617]
gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
Length = 369
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT----GQASRVLKLERNSLEYLL 78
R++ D K +H D+ Q +FG+ M DT + R L ++
Sbjct: 62 FRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS---CGFATIV 118
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 138
F G+ +K DW RPL ++ RYA D YLL I S + E+E +
Sbjct: 119 ESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIA-------SKLVDETEAAGQ 171
Query: 139 PLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
+ D CR L ++ L + +Y I L QQLA + + WR IA
Sbjct: 172 -----MAAALDECRLLCQRRTSVLKPQEAYREITN--AWQLRPQQLAALRLMAAWRLEIA 224
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R D + +V+ L ++A+ +P T +L L
Sbjct: 225 REKDMAVNFVVREENLWKVARFMPGTLGELDHL 257
>gi|392532926|ref|ZP_10280063.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
arctica A 37-1-2]
Length = 376
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
E+ KDP KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 EILKDPAVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLG-EGNCMGFALMVKELQ 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
G+ +K +W RPL + L YA DT YLL ++++ ++++ + D + E
Sbjct: 127 GIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIDRINA----AGFFDIVINE 182
Query: 143 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
KR++ +L K++ +N++ L +LAV+ L WR A
Sbjct: 183 SELIAKKRAFQTPDELLYKDI--KNAW---------QLKPHELAVLKELAVWRRNKAIKK 231
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + +VL + EIAK+ P++ LR++
Sbjct: 232 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
Length = 380
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
Length = 384
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 14/237 (5%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D + + + P+ ++ D KV H A +DI + G+ +FDT A +
Sbjct: 53 LIDPIAPDIDLQPFF-DLMIDKKIVKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSICG 111
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ S + ++ H G + +K + DW RPL ++ L YA D YL +Y ++K +L
Sbjct: 112 FGDSISYDQIVQHCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLE 171
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ D + ++YD + E E + G ++LAV+ +
Sbjct: 172 KNQRTHWMDDEVTILLNPKTYD----MPEDEAWKKVK--------GKVKKPRELAVLQKI 219
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVL 244
WR+ AR + +++ + LIEIA Q P + L+RL ++ +R + P L
Sbjct: 220 AAWREREARKYNMPRRHLMKDECLIEIAIQQPKDESALKRLRSLNKNWDKRSIAPSL 276
>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
gi|387871111|ref|YP_005802484.1| protein rnd [Erwinia pyrifoliae DSM 12163]
gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
Length = 369
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT----GQASRVLKLERNSLEYLL 78
R++ D K +H D+ Q +FG+ M DT + R L ++
Sbjct: 62 FRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLSC---GFATIV 118
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT 138
F G+ +K DW RPL ++ RYA D YLL I S + E+E +
Sbjct: 119 ESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIA-------SKLVDETEAAGQ 171
Query: 139 PLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
+ D CR L ++ L + +Y I L QQLA + + WR IA
Sbjct: 172 -----MAAALDECRLLCQRRTSVLKPQEAYREITN--AWQLRPQQLAALRLMAAWRLEIA 224
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
R D + +V+ L ++A+ +P T +L L
Sbjct: 225 REKDMAVNFVVREENLWKVARFMPGTLGELDHL 257
>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 396
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 112/237 (47%), Gaps = 21/237 (8%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY-- 76
+GP L + DP KV+H A +D+ L + G +FDT A +L + + Y
Sbjct: 74 LGP-LAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLLG-HGDQIGYAR 131
Query: 77 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENS 136
++ + + +K + DW RPL LRYA +D +L +Y ++ L E +
Sbjct: 132 MVQIYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDL-----EEKGR 186
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYG---LQGAGLNAQQLAVVAGLCEWRDV 193
L+E + + R L + +N++ I G L+GA QLAV+ L WR+
Sbjct: 187 LDWLSEDFAAISEESRYLPD----PDNAWRRIKGQKYLKGA-----QLAVLQALAAWRER 237
Query: 194 IARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
A D ++L + L E++++ PT A L ++ + ++R+ +L++++ +
Sbjct: 238 QAMEKDLPKRWILSDDVLTELSQRSPTDLASLAKVRGLEDKTLQRHGETLLALVREA 294
>gi|365538247|ref|ZP_09363422.1| ribonuclease D [Vibrio ordalii ATCC 33509]
Length = 371
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 16/240 (6%)
Query: 19 VGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYL 77
+ P++ E+ +D + KV+H D+ FG M DT + L ++ L
Sbjct: 63 MAPFV-ELLQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFLGHGLSTGFAAL 121
Query: 78 LHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM-PKESENS 136
++ F G+ +K DW RPL + L YA D YLL IY+ + K++ ++
Sbjct: 122 VNEFLGIEVDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQAGWWQAAQQ 181
Query: 137 DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAR 196
++ L V KR K+ + +YL I G L Q+LA++ L WR A
Sbjct: 182 ESELLSV-KRI---------KQTHPDLAYLDIKG--AWQLTPQELAILKPLATWRYEEAV 229
Query: 197 ADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
D + +V+ L+ IA+ T+A+++ S I+R+ +++++K Q A+
Sbjct: 230 RRDLALNFVVKETDLLTIARLGLTSASRMIDAGADPRS-IQRHSAKIIALVKAGQQTPAD 288
>gi|159163846|pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 157 KELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAK 216
K + ++ SYL +Y Q LN QQL L WRD AR +DES GYVLPN +++IA+
Sbjct: 8 KPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAE 67
Query: 217 QLP 219
+LP
Sbjct: 68 ELP 70
>gi|333996298|ref|YP_004528911.1| putative 3'-5' exonuclease [Treponema azotonutricium ZAS-9]
gi|333735924|gb|AEF81873.1| putative 3'-5' exonuclease [Treponema azotonutricium ZAS-9]
Length = 282
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D L + +++ D K+M+GA+ D + +G + N+FD A VL
Sbjct: 56 FIIDPLNIE---NDEIKKFLLDKNTVKIMYGAESDASLVYSQYGTQIQNLFDLQIAVDVL 112
Query: 68 KLERNSLEYLLHHFCGVNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
ERN L++ L HF + K+YQ+ +W RP+ + + YA D +L + DI+ +
Sbjct: 113 DAERNGLDFALDHFLDIEIKNKKKYQSHNWTTRPIRIDAMEYALNDVAHLFKLKDILMEQ 172
Query: 126 LSSMPKESENSDTPLTEVYKRSY 148
+ S K E L E+ ++++
Sbjct: 173 VKSKNKYEE----LLYEILRKNF 191
>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
Length = 402
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+DI L R G+ + +FDT A+R+L +R L + GV +K +Q+ D
Sbjct: 92 ILHDADQDIASL-RMCGLEIPELFDTMLAARLLGFQRFGLAAVCEQILGVTLDKNHQSDD 150
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMK---IKLSSMPKESENSDTPLTEVYKRSYDVC 151
W RPLP LRYA D L +Y+ M K + + LT K+
Sbjct: 151 WSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILTRPTKKP---- 206
Query: 152 RQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
+ ++ G+ G + + LA++ L + R+ IA D ++ NRTL
Sbjct: 207 ---------DSEPWRNLRGM-GKIRSRRHLAILEELWKTRERIAAEIDLEPTRLIKNRTL 256
Query: 212 IEIAKQLPTT 221
+ +A P T
Sbjct: 257 VALAFNPPRT 266
>gi|333919445|ref|YP_004493026.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333481666|gb|AEF40226.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 417
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 15/219 (6%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + LR P + +P + V+H AD+D+ L + G+ +FDT ASR+
Sbjct: 76 FLIDPIPLRGSFEPLAAVI--NPLEW-VLHAADQDLPGLA-ELGLTPTALFDTELASRLA 131
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
LER L + G + K + ADW RPLP L YA D LL + + + +L+
Sbjct: 132 GLERVGLAAISESLLGFSLAKGHGAADWSSRPLPTSWLNYAALDVEILLDLREALDRELT 191
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
K ++ + R+ E+ + N I+ ++ + + LA L
Sbjct: 192 YQGKREWATE---EFEFVRTRPALAPSPERWRRTAN----IHTIR----DKRGLATAREL 240
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226
RD+IA +D + +LP+ ++ A + P TAA LR
Sbjct: 241 WFTRDMIAEQEDIAPKRILPDAAIVAAAVRRPRTAADLR 279
>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
Length = 397
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ KD + KV+H D+ Q FG M DT + L ++ L+ F GV
Sbjct: 94 LLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAALVSEFVGV 153
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESENSDTPLTEV 143
+ +K DW RPL + L YA D HYL+ +Y+ I++ + + E+ ++ L +V
Sbjct: 154 DLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAAQQESDL-QV 212
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
KR ++ +N+YL I G L QQLA++ L WR A D +
Sbjct: 213 AKRI---------RKANPDNAYLDIKG--AWQLKPQQLAILRPLATWRLKEAIKRDLALN 261
Query: 204 YVLPNRTLIEIAK 216
+V + L +A+
Sbjct: 262 FVFKEQDLWAVAR 274
>gi|388599678|ref|ZP_10158074.1| ribonuclease D [Vibrio campbellii DS40M4]
Length = 372
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 13/233 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 68 ELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 127
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYL+ +Y+ + K+ ++ E
Sbjct: 128 VELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKV---------NEAGWWEA 178
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ + + EN+YL I G L A +LA++ L WR A D +
Sbjct: 179 VQQESDLLVSKRIRNVNEENAYLDIKG--AWQLRASELAILKPLATWRYREAIKRDLALN 236
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAAN 256
++ L+ +A+ L T K I R+ + I+K + Q A+
Sbjct: 237 FIFKEGDLLTVAR-LGLTGFKKMEAEGIDIRAINRHGAKIAGIVKQAKQTPAD 288
>gi|425734728|ref|ZP_18853045.1| 3'-5' exonuclease family protein [Brevibacterium casei S18]
gi|425480664|gb|EKU47828.1| 3'-5' exonuclease family protein [Brevibacterium casei S18]
Length = 390
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H +D+ LQ D G+ +FDT A+R+L E+ L + GV KE+ D
Sbjct: 91 VIHSVTQDLPCLQ-DRGMVPTALFDTELAARLLGWEKFGLAAVAERTLGVRLAKEHSAVD 149
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK 131
W RPLP+E L YA D LL I D + +L + K
Sbjct: 150 WSTRPLPEEWLNYAALDVEVLLPIRDALAAELVAAGK 186
>gi|343497084|ref|ZP_08735165.1| ribonuclease D [Vibrio nigripulchritudo ATCC 27043]
gi|342820106|gb|EGU54936.1| ribonuclease D [Vibrio nigripulchritudo ATCC 27043]
Length = 371
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 19/232 (8%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
++ KD + KV+H D+ FG M DT + L ++ L+ + G
Sbjct: 68 DLLKDTSVLKVLHACGEDLEVFAHVFGTIPVPMMDTQIMAAFLGHGLSTGFAALVKEYLG 127
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL D+ L YA D HYLL +Y+ + E+ D E
Sbjct: 128 VELDKSEARTDWLARPLTDKQLEYAAADVHYLLPMYEKL---------EAAVKDAGWWEA 178
Query: 144 YKRSYDVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDE 200
++ D+ + K +++ N +YL I G L QLA++ L +WR A D
Sbjct: 179 AQQESDL---IASKRVVTHNPEKAYLDIKG--AWQLRPNQLAILKILAQWRLEEALKRDL 233
Query: 201 STGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 252
+ +V + L A+ K H I R+ V+S++K Q
Sbjct: 234 ALNFVFREQNLWACAR-FGIKGLKQMEQQGFDHREIRRHGNTVISMVKKGEQ 284
>gi|417860412|ref|ZP_12505468.1| ribonuclease D [Agrobacterium tumefaciens F2]
gi|338823476|gb|EGP57444.1| ribonuclease D [Agrobacterium tumefaciens F2]
Length = 386
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ T + +VD L + + P L E+ +P KV H A +DI + G+ +FDT
Sbjct: 42 MASPTLEVLVDPLAKGLDLTP-LFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDT 100
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ V + S + L+ V +K + DW RPL ++ L YA D +L +Y
Sbjct: 101 QVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVY 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+K +L E E LTE D+ ++ ++++L L+
Sbjct: 161 LALKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPT 208
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 209 ELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
Length = 325
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCG 83
E+ KD + KV+H D+ Q FG M DT + L ++ L+ + G
Sbjct: 84 ELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFATLVEEYLG 143
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
V +K DW RPL + L YA D HYLL +Y+ + K+ ++ E
Sbjct: 144 VALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKV---------TEAGWWEA 194
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ D+ +E EN+YL I G L +LAV+ L WR A D +
Sbjct: 195 VQQESDLLVSKRIRETNEENAYLDIKG--AWQLKPSELAVLKPLATWRYREAIKRDLALN 252
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
++ L+ +A+ T+ K+
Sbjct: 253 FIFKEGDLLTVARLGLTSFKKM 274
>gi|376290603|ref|YP_005162850.1| ribonuclease D [Corynebacterium diphtheriae C7 (beta)]
gi|372103999|gb|AEX67596.1| ribonuclease D [Corynebacterium diphtheriae C7 (beta)]
Length = 407
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A D+ L + G Y +FDT A R+ L R +L +L V K + D
Sbjct: 90 IIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLPRVNLASMLEERLEVTLKKAHGAED 148
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP L YA D L+ + + MK+ L + K E +++ C L
Sbjct: 149 WSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGK---------LEWHRQE---CAHL 196
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
L ++ S+ + G+ +QL V L E RD AR + S +LP++ L
Sbjct: 197 INTSSHGLDTQRSWQDMKGVSRLT-RPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVL 255
Query: 212 IEIAKQLP-TTAAKLR--RLLKSKHSYIERYMGPVLSIIKN 249
I +A++ P + A LR + K I R+M + ++++
Sbjct: 256 ISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLES 296
>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
Length = 381
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 23/216 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
V+D L + + P L+E+F + KV H +D+ L F +FDT A+ + +
Sbjct: 54 VIDALAEGIDLTP-LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIFDTQIAAMLCE 112
Query: 69 LERNSLEY--LLHHFCGVNANKE-YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
NS+ Y L+ F GV NK ++ DW RPL + +RYA +D YL +Y I++
Sbjct: 113 YHENSVGYSKLVEQFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILRDI 172
Query: 126 LSSMPKES---ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 182
L+S + S E D + V Y L S Y A L Q+
Sbjct: 173 LTSKGRLSWYMEEMDCIVDSVSDN--------YTTILESMECY--------ADLTEQEAN 216
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL 218
+ + EWR+ +AR + + ++ R ++ I K
Sbjct: 217 IARSVVEWRERVARLLNINRNIIMNARDVLNITKDF 252
>gi|397565072|gb|EJK44464.1| hypothetical protein THAOC_36991 [Thalassiosira oceanica]
Length = 735
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 6 EDFVVDTLKLRVQ--VGPYLREVFKDPTKKKVMHG-ADRDIVWLQRDFGIYLCNMFDTGQ 62
+DFV+D L V + L +F DP+ K+ H D L +DFGI + N FDT +
Sbjct: 334 KDFVIDPLAPGVWDAIPSILGPIFADPSVVKIGHAIGGMDTKSLHQDFGILVVNAFDTYE 393
Query: 63 ASRVLKLERNS---LEYLLHHFCGVNANK------EYQNADWRVRPLPDEMLRYAREDTH 113
+ RVL R+ L L + + K YQ +DWR+RPL D L Y R D
Sbjct: 394 SCRVLMGARDGGLGLAKLCRRYGLPDWEKYQALKNRYQKSDWRMRPLDDGALTYGRYDVR 453
Query: 114 YLLYIYDIM 122
YL + ++
Sbjct: 454 YLCALRRLL 462
>gi|409397310|ref|ZP_11248230.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409398328|ref|ZP_11249142.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409117258|gb|EKM93693.1| ribonuclease D [Pseudomonas sp. Chol1]
gi|409118194|gb|EKM94598.1| ribonuclease D [Pseudomonas sp. Chol1]
Length = 405
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 121/279 (43%), Gaps = 29/279 (10%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCG 83
+ +D KV+H D+ L R G +FDT A L L S+ Y L+H G
Sbjct: 101 LLQDTAVVKVLHACGEDLEVLSRLTGQLPAPLFDTQLAGGYLNLG-FSMGYSRLVHAVLG 159
Query: 84 VNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV 143
++ K+ +DW RPL + +RYA ED +L +Y + +P+ SE+ + E
Sbjct: 160 LDLPKDETRSDWLQRPLSEMQMRYAAEDVQHLAELYAAL------LPRLSEDKRRWVVE- 212
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
++ L ++E + +Y + Q L QQLAV+ L WR+ ARA ++
Sbjct: 213 --DGAELVANL-QRETDPDEAYREVK--QAWRLRPQQLAVLRVLTAWRERQARARNQPRN 267
Query: 204 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK 263
+L +L +A+ P L R ++ H R G L E+I Q
Sbjct: 268 RILREASLWPLARTQPKDLVALAR-IEDMHPRTVRQDGETL------------LELIRQA 314
Query: 264 LKEERMEVASEETEVLVLDTSSNL-KIPNVGRESVDGVD 301
E + E L L+ +S L K+ VG+ + + +D
Sbjct: 315 AALPAQEWPAALPEPLPLEAASVLKKLRAVGQRTANELD 353
>gi|417839505|ref|ZP_12485683.1| Ribonuclease D [Haemophilus haemolyticus M19107]
gi|341952473|gb|EGT78999.1| Ribonuclease D [Haemophilus haemolyticus M19107]
Length = 380
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L + L L + V
Sbjct: 77 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSVGLAKLAQQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
+K +W RPL D L+YA D YLL +Y I++ +L+ P E D +
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQALRDDCELAIS 196
Query: 145 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
K +L E++ SE +YL I + LN +L+ + L +WR +A D + Y
Sbjct: 197 K-----THKLQERD--SEKAYLDIPNVW--KLNPLELSRLRILAQWRQNVAIERDLALSY 247
Query: 205 VLPNRTLIEIAKQLPTTAAKL 225
++ + L ++AK P +++
Sbjct: 248 IVKSDNLWKVAKNNPRNTSEM 268
>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
Length = 382
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 16/230 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ R E VVDTL + + P+ ++ + KV H A +DI + GI +FDT
Sbjct: 44 MASRDEAVVVDTLAPGIDLKPFF-DLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDT 102
Query: 61 GQASRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYI 118
A+ VL +S+ Y L+ G +K ++ DW RPL DE L YA D +L +
Sbjct: 103 QVAAMVLGYG-DSIAYDQLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDV 161
Query: 119 YDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
+ + L + S+ ++YD + E E L+
Sbjct: 162 FAALDADLKQRGRSDWVSEEMEVLTSPKTYD-----FHPESAWER-------LKTRVRKP 209
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
++LAV+ + WR+ A+ D VL + L +IA PT+ +L L
Sbjct: 210 KELAVLMEVAAWREQEAQTRDVPRSRVLKDDALGDIATHAPTSLERLANL 259
>gi|443289631|ref|ZP_21028725.1| 3'-5' exonuclease [Micromonospora lupini str. Lupac 08]
gi|385887246|emb|CCH16799.1| 3'-5' exonuclease [Micromonospora lupini str. Lupac 08]
Length = 441
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A+R+ ER L L G K + AD
Sbjct: 128 VLHAASQDLACLA-EVGLRPRRLFDTELAARLAGFERVGLAALTEQLLGFTLEKHHSAAD 186
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSD--TPLTEVYKRSYDVCR 152
W RPLP+ L YA D L + D + +L+ K + ++ L R V
Sbjct: 187 WSSRPLPESWLTYAALDVEMLTDLRDALDAELTRQGKSAWAAEEFAALVRTGARPPRVRA 246
Query: 153 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + + S +H + G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 EPWRR-----TSGIH----RVRGARAQ--ARVRSLWYARDQIAARRDAAPGRVLPDSAIV 295
Query: 213 EIAKQLP 219
A+ P
Sbjct: 296 AAAELDP 302
>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
Length = 399
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 96 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLGQWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
Length = 380
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLGQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
Length = 380
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P KV+H D++ ++F M DT +R L L ++ L L + V
Sbjct: 77 LLANPKVLKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL + L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSNIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
Length = 380
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R + L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 137 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAQWRQNVAIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSEHLWKVAKNNPRNTSEM 268
>gi|408791723|ref|ZP_11203333.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463133|gb|EKJ86858.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 406
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 6 EDFVVDTLKLR--VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQA 63
+++++D LK+ +GP +FKD K+ H A DI L+RDFG N DT +
Sbjct: 55 KNYLIDPLKITNLSALGP----LFKDENILKIFHSAQDDIKALKRDFGFEFVNTADTMIS 110
Query: 64 SRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
SR+L LE++SL +++ H+ V +K Q ++W +RPL + L+YA DT YL I+
Sbjct: 111 SRLLSLEQSSLSHVVEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIW 166
>gi|408788884|ref|ZP_11200598.1| ribonuclease D [Rhizobium lupini HPC(L)]
gi|408485322|gb|EKJ93662.1| ribonuclease D [Rhizobium lupini HPC(L)]
Length = 386
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ T + +VD L + + P L E+ +P KV H A +DI + G+ +FDT
Sbjct: 42 MASPTLEVLVDPLAKGLDLTP-LFELMANPGVVKVFHAARQDIEIIYHLGGLIPHPIFDT 100
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ V + S + L+ V +K + DW RPL ++ L YA D +L +Y
Sbjct: 101 QVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVY 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+K +L E E LTE D+ ++ ++++L L+
Sbjct: 161 LSLKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPT 208
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 209 ELAILKFIAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131]
gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131]
Length = 373
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 14/221 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D L L P+ + + +P + K +H D+ DF M DT + L
Sbjct: 54 LIDPL-LMTDFSPF-KALLTNPEQLKFLHAGSEDLEVFMHDFDCVPEPMIDTQVVAAFLG 111
Query: 69 LERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ L+ G+ +K DW RPL ++ YA D YLL + +I+ K++
Sbjct: 112 YPISCGFASLVAEHLGIELDKSESRTDWLARPLSEKQCDYAAADVLYLLPLAEILMEKVT 171
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ D V +R +K L E +Y++I+ L +QLA + L
Sbjct: 172 EAGYLEDAKDECQRVVARR---------QKALKPEKAYMNIHN--AWQLRDEQLACLQLL 220
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
EWR A+A D + +V+ L ++A+ LP++ +L L
Sbjct: 221 AEWRLNQAKARDMAVNFVVKEEHLWKVARYLPSSLGELDAL 261
>gi|381404322|ref|ZP_09929006.1| ribonuclease D [Pantoea sp. Sc1]
gi|380737521|gb|EIB98584.1| ribonuclease D [Pantoea sp. Sc1]
Length = 373
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 24/231 (10%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI-VWLQRDFGIYLCNMFDTGQASRVL 67
++D L +R P++ + D K +H D+ V+L R FG+ M DT Q
Sbjct: 54 LIDPLNIR-DWSPFV-ALLTDTAVTKFLHAGGEDLEVFLHR-FGVLPTPMIDT-QILAAF 109
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
+ S + ++ HF V +K DW RPL + YA D HYLL I + +
Sbjct: 110 SGQPLSWGFAAMVAHFTQVELDKSESRTDWLARPLTERQCVYAAADVHYLLPIARQLMVN 169
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLS---ENSYLHIYGLQGAGLNAQQLA 182
+E+ N L+E C L ++ L S E ++ I L +QLA
Sbjct: 170 ----TEEAGNMAAALSE--------CDNLCQRRLDSLAPEEAWRDITN--AWQLRPRQLA 215
Query: 183 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKH 233
+ L WR +AR D + +V+ L ++A+ +P + +L L S H
Sbjct: 216 ALQRLAAWRLTLAREKDMAVNFVVREENLWKVARFMPGSLGELDHLGLSGH 266
>gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104]
gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104]
Length = 428
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ ++DT A R+ ER +L ++ G K + AD
Sbjct: 107 ILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAAD 165
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + + L+ K T+ + +D R+
Sbjct: 166 WSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGK---------TDWAAQEFDYLREA 216
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
KE + + G+ + + LA V L RD IA+ D + +LP+ +
Sbjct: 217 GSKEPGPAARRDRWRRTSGIHRV-RDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAI 275
Query: 212 IEIAKQLPTTAAKL 225
IE A PTT +L
Sbjct: 276 IEAALANPTTIEEL 289
>gi|417749597|ref|ZP_12397989.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397]
gi|336458819|gb|EGO37776.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397]
Length = 428
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ ++DT A R+ ER +L ++ G K + AD
Sbjct: 107 ILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAAD 165
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + + L+ K T+ + +D R+
Sbjct: 166 WSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGK---------TDWAAQEFDYLREA 216
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
KE + + G+ + + LA V L RD IA+ D + +LP+ +
Sbjct: 217 GSKEPGPAARRDRWRRTSGIHRV-RDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAI 275
Query: 212 IEIAKQLPTTAAKL 225
IE A PTT +L
Sbjct: 276 IEAALANPTTIEEL 289
>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|384041701|ref|YP_005480445.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
gi|384050216|ref|YP_005477279.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|384053326|ref|YP_005486420.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|384056558|ref|YP_005489225.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|384059199|ref|YP_005498327.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|384062493|ref|YP_005483135.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|384118569|ref|YP_005501193.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
Length = 217
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK--LERNSLEYLL 78
P L+ V DP+ K+MH A D+ LQ GI + + T A+R+++ +R+ L L
Sbjct: 73 PNLKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHGLAALC 132
Query: 79 HHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126
GV +K+ Q +DW + L E L YA D YL ++D M L
Sbjct: 133 RDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHALWDKMSALL 180
>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
Length = 401
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELILA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|317508452|ref|ZP_07966122.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
gi|316253299|gb|EFV12699.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
Length = 470
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT R+ ER L L+ GV K + AD
Sbjct: 128 VLHAADQDLPCLA-ELGLRPAKLFDTELGGRIAGFERVGLAALVETLLGVGLAKGHGAAD 186
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D LL + + + L+ K TE ++ R +
Sbjct: 187 WSQRPLPPEWLNYAALDVELLLPMREALLEALAEQGK---------TEWALEEFEYVR-M 236
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
S + + + A + LAVV L R+ +AR D + G VLP+
Sbjct: 237 RPPNAQSPDRWRRTGRIHEAK-GRRALAVVRELWLAREDLARGRDIAPGRVLPD 289
>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
Length = 399
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + +
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRILAKWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>gi|408827128|ref|ZP_11212018.1| ribonuclease D [Streptomyces somaliensis DSM 40738]
Length = 384
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 12/194 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L R+ G+ +FDT A R+ R L ++ G K + D
Sbjct: 73 ILHAATQDLPCL-REIGMVPSELFDTELAGRLAGFPRVGLGAMVESVLGYVLEKGHSAVD 131
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ LRYA D L+ + D ++ +L K + +
Sbjct: 132 WSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWAR-----QEFAAIAAAPPPP 186
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
K+ S +H +QLAVV L RD IA+ D S G VL + ++E
Sbjct: 187 PRKDPWRRTSGMHKV------RRRRQLAVVRELWTVRDRIAQRRDVSPGKVLSDAAIVEA 240
Query: 215 AKQLPTTAAKLRRL 228
A LP L L
Sbjct: 241 ALALPADVQALTAL 254
>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
Length = 398
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 25/262 (9%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYL-CNMFDTGQASRV 66
++VD LK+ G + +F+ KV+H D+ L G+ C + DT A+ +
Sbjct: 67 YLVDMLKITDWSG--VSRLFESRDILKVVHACSEDLE-LFNCVGLSQPCGLIDTQVANAL 123
Query: 67 LKLERN-SLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM--K 123
L E N L+ L+ G+ K +DW RPL D+ ++YA+ED L +Y +
Sbjct: 124 LDGELNEGLQSLVRQNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLWPLYQKLAEA 183
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAV 183
++LS + + + D+ R YL + G AQQL
Sbjct: 184 LRLSGKYEIALEEGEAMRLAAAGVQDMGR-----------YYLKLRGGWRLRKGAQQL-- 230
Query: 184 VAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPV 243
+A L WR+ AR D + P+ LI IA++ P T +L + + + + RY +
Sbjct: 231 LAKLAAWREQEARGRDIPRKKICPDDELIAIAQRRPRTLGQLTEITSIQGAGLRRYGAEL 290
Query: 244 LSIIKNSMQNAAN-----FEVI 260
+ +++ M+ + FE+I
Sbjct: 291 VGMVREHMKADGDEPETGFEMI 312
>gi|410862214|ref|YP_006977448.1| ribonuclease D [Alteromonas macleodii AltDE1]
gi|410819476|gb|AFV86093.1| ribonuclease D [Alteromonas macleodii AltDE1]
Length = 323
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 20/222 (9%)
Query: 34 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 91
KV+H D+ F +FDT A +L + SL Y L+ C ++ +K
Sbjct: 15 KVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMG-PSLGYAKLVELLCEISLDKGES 73
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
DW RPL + L YA D YLL Y + + ++ K Y+
Sbjct: 74 RTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGK------------VHWIYEEV 121
Query: 152 RQLYEK---ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
L EK ++ + +YL I LN++QL V+ L WR AR D + +V
Sbjct: 122 ALLVEKKRAQMPEDFAYLSIKN--SWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFKE 179
Query: 209 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L E A++L + L R+ H + RY ++++I+ +
Sbjct: 180 GHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEA 221
>gi|372269240|ref|ZP_09505288.1| ribonuclease D [Alteromonas sp. S89]
Length = 386
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 16/206 (7%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L+E+ +D K+MH D+ L+R G+ +FDT A+ + + L Y +
Sbjct: 85 LKELLQDTRVVKIMHSCSEDLETLERLLGVIPDPIFDTQIAAAISGMG-AGLGYAATVSQ 143
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPL 140
++ K +DW RPL D YA D +L +Y I+ +L +E + D
Sbjct: 144 LLQIDLPKSETRSDWLQRPLSDSQKNYAALDVVWLPLVYGILVKRL----REQDRLDW-- 197
Query: 141 TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG-LNAQQLAVVAGLCEWRDVIARADD 199
++ C + E L+ ++GA L QLAV+ LC WR+ ARA D
Sbjct: 198 ------LWEDCTAMVAAARQPEPPALYYRKVKGAWRLRQNQLAVLQDLCAWREREARARD 251
Query: 200 ESTGYVLPNRTLIEIAKQLPTTAAKL 225
+++ + +A+ +P A L
Sbjct: 252 MPRNHLIKENVCMALAQHMPKYLATL 277
>gi|296394326|ref|YP_003659210.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
gi|296181473|gb|ADG98379.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
Length = 470
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ +FDT R+ ER L L+ GV K + AD
Sbjct: 117 VLHAADQDLPCLA-ELGLRPAKLFDTELGGRIAGFERVGLAALVEALLGVGLAKGHGAAD 175
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + + + L+ K ++ + V R +
Sbjct: 176 WSQRPLPPEWLNYAALDVELLIPMREALLAVLAEQGK-TQWALEEFEHVRTRPPNPA--- 231
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
E +H + G A LAVV L R+ +A+ D + G VLP+ ++
Sbjct: 232 -NPERWRRTGRIH----EAKGRRA--LAVVRELWLAREELAKKRDIAPGRVLPDTAVVAA 284
Query: 215 AKQLP 219
A P
Sbjct: 285 ANNTP 289
>gi|424910030|ref|ZP_18333407.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846061|gb|EJA98583.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 386
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ T + +VD L + + P L E+ +P KV H A +DI + G+ +FDT
Sbjct: 42 MASPTLEVLVDPLAKGLDLTP-LFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDT 100
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ V + S + L+ V +K + DW RPL ++ L YA D +L +Y
Sbjct: 101 QVAAMVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVY 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+K +L E E LTE D+ ++ ++++L L+
Sbjct: 161 LSLKAQL-----EREGRSLWLTE----EMDILESRDTYDMHPDDAWLR---LKSRLRKPT 208
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+LA++ + WR+ AR+ + VL + + EIA+Q P A L RL
Sbjct: 209 ELAILKFVAAWREREARSRNVPRSRVLKDDAIFEIAQQQPKDAEALSRL 257
>gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 428
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
+ + ++H AD+D+ L + G+ ++DT A R+ ER +L ++ G K +
Sbjct: 103 SDEWILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGH 161
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLP E L YA D L+ + + L+ K T+ + +D
Sbjct: 162 GAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGK---------TDWAAQEFDY 212
Query: 151 CRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLP 207
R+ KE + + G+ + + LA V L RD IA+ D + +LP
Sbjct: 213 LREAGSKEPGPAARRDRWRRTSGIHRV-RDQRGLAAVRELWLTRDRIAQRRDIAPRRILP 271
Query: 208 NRTLIEIAKQLPTTAAKL 225
+ +IE A PTT +L
Sbjct: 272 DSAIIEAALANPTTIEEL 289
>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
SM9913]
gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
SM9913]
Length = 376
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFC 82
++ KDP KV+H DI Q+ G +FDT A ++L E N + + ++
Sbjct: 68 QILKDPKVLKVLHSPSEDIEVFQKYAGFVPYPLFDTQFALQLLG-EGNCMGFALMVKTLL 126
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTE 142
+ +K +W RPL + L YA DT++LL ++++ + S+ K ++ D + E
Sbjct: 127 NIEIDKSESRTNWLQRPLTQKQLEYAAADTYHLLPCFELI---IDSI-KAADLFDIVINE 182
Query: 143 ----VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
KR++ + +L KE+ +N++ L +LAV+ L WR A
Sbjct: 183 SELVANKRAFQIPDELLYKEI--KNAW---------QLKPHELAVLKELAVWRRNKAIRK 231
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + +VL + EIAK+ P++ LR++
Sbjct: 232 NLALNFVLKEHNMTEIAKRGPSSLNALRQI 261
>gi|392420519|ref|YP_006457123.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
gi|390982707|gb|AFM32700.1| ribonuclease D [Pseudomonas stutzeri CCUG 29243]
Length = 374
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 17/223 (7%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
+++D L +R + +DP KV+H D+ L R G +FDT A+ L
Sbjct: 55 YLIDPLSVRDWSA--FAALLQDPAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYL 112
Query: 68 KLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125
+ S+ Y L+ G+ K +DW RPL D +RYA ED +L +Y+ +
Sbjct: 113 NIG-FSMGYSRLVQAVLGIELPKGETRSDWLQRPLSDMQVRYAAEDAQHLAELYEAL--- 168
Query: 126 LSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVA 185
+PK SE+ V + ++ L ++E + +Y + Q L QQLAV+
Sbjct: 169 ---LPKLSEDKR---AWVLEDGAELVANL-QRESDPDEAYRDVK--QAWRLKPQQLAVLK 219
Query: 186 GLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
L WR+ ARA ++ VL +L +A+ P L R+
Sbjct: 220 VLAAWRERQARARNQPRNRVLREASLWPLARTQPRDLVTLARI 262
>gi|315655438|ref|ZP_07908338.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
gi|315490378|gb|EFU80003.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
Length = 406
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ +L + G+ +FDT A+++L + L +L G++ KE+ AD
Sbjct: 93 ILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQGFGLAAVLEQVLGISLAKEHSAAD 151
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP + YA D YL+ + + + ++L K+ + ++ +D
Sbjct: 152 WSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKD---------DWAEQEFDFLLD- 201
Query: 155 YEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEI 214
++ + + H+ G G + + LA + L RD +A+ +D + VL N +I +
Sbjct: 202 FQPPAPKPDPWRHVPG-SGKVHSPRNLAALRELWYSRDDLAQQEDLAPTKVLTNAAMIAL 260
Query: 215 AKQLPTTAAKLRRLLKSKHSYIER 238
A LP + L +H I R
Sbjct: 261 AVGLPKGKRYMAALEDFRHDRIGR 284
>gi|395786188|ref|ZP_10465915.1| ribonuclease D [Bartonella tamiae Th239]
gi|423716919|ref|ZP_17691109.1| ribonuclease D [Bartonella tamiae Th307]
gi|395422486|gb|EJF88682.1| ribonuclease D [Bartonella tamiae Th239]
gi|395428993|gb|EJF95068.1| ribonuclease D [Bartonella tamiae Th307]
Length = 386
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 47/251 (18%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D L + + + + D KV H A +DI + + G+ +FDT A+ +
Sbjct: 52 LIDPLSENIDLSSFF-TLISDTQVVKVFHSARQDIEIIYKMAGLIPTPLFDTQIAAAICG 110
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
E S + +++ G +K + DW RPL + L YA D YL +Y ++ +L
Sbjct: 111 YGETISYDQIVNRITGDTIDKTSRFTDWSARPLSENQLSYALADVTYLRQVYRVLNEELE 170
Query: 128 ------------SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG 175
S+ K + D P E +K+ ++G
Sbjct: 171 KKGRSDWLNEEMSVLKTPKTYDLPEDEAWKK------------------------VKGRL 206
Query: 176 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP---TTAAKLRRLLK-- 230
+++LAV+ + WR+ A+ + G VL + LIEIA Q P + AKLR + K
Sbjct: 207 RKSRELAVLQKIAAWREREAKMRNIPRGRVLKDEALIEIATQQPKDEASLAKLRTITKGW 266
Query: 231 ----SKHSYIE 237
S HS +E
Sbjct: 267 ERSSSAHSLLE 277
>gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
Length = 411
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 19/228 (8%)
Query: 8 FVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL 67
F++D + + ++GP L E+ T ++H AD+D+ L R+ G +FDT A +L
Sbjct: 68 FLIDPIGIEDRLGP-LAELLA--TDVWILHAADQDLPCL-RELGFNPPEIFDTEVAGILL 123
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
ER SL+ + G KE+ ADW RPL E+ YA D L+ + + +L+
Sbjct: 124 GFERISLQAEVAEVLGYGLAKEHSMADWSERPLAPELRAYAALDVELLIELRE----RLT 179
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ-LAVVAG 186
+M + + + ++ C ++ +E + + + G+ ++ L ++
Sbjct: 180 AMLRAAGR--------LEWLHEECEEIRLREPKTPSPQPWRKSARRNGMTDRRALGILES 231
Query: 187 LCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR--LLKSK 232
L R+ +A+ D + VLP++ L E+A + P + A + R LL+S+
Sbjct: 232 LWRSREKLAKERDLAPEKVLPSKVLAELASRKPRSHADVARSPLLQSR 279
>gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1]
gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1]
Length = 476
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 49 DFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYA 108
D G+ +FDT A+++L +R L + ++ G+ KE+ ADW RPLP + YA
Sbjct: 108 DIGLRPRALFDTEIAAKLLGRKRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYA 167
Query: 109 REDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHI 168
D L+ + ++M+++L K S E +K + + +K+ +L I
Sbjct: 168 ALDVELLIELEEVMRVELKKQGKLSWAE-----EEFKH---LLSKGAQKKAPHPRPWLKI 219
Query: 169 YGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+ + L + L + RD +AR D + +L + +IE K+ P+ A R +
Sbjct: 220 SHISVLMHDRVGLVIAKALWQKRDALAREYDIAPTLLLSDAAIIEAGKRKPSNARAFRAI 279
Query: 229 -----------------LKSKHSYIERYMGPVLSIIKNSMQNA 254
+ +++ I+R + P SI KN ++NA
Sbjct: 280 RSLNERVRMHTGSEQDKMFERYAPIQRKVKP--SIWKNVIENA 320
>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
Length = 385
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 20/222 (9%)
Query: 34 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKEYQ 91
KV+H D+ F +FDT A +L + SL Y L+ C ++ +K
Sbjct: 77 KVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMG-PSLGYAKLVELLCEISLDKGES 135
Query: 92 NADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVC 151
DW RPL + L YA D YLL Y + + ++ K Y+
Sbjct: 136 RTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGK------------VHWIYEEV 183
Query: 152 RQLYEK---ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPN 208
L EK ++ + +YL I LN++QL V+ L WR AR D + +V
Sbjct: 184 ALLVEKKRAQMPEDFAYLSIKN--SWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFKE 241
Query: 209 RTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250
L E A++L + L R+ H + RY ++++I+ +
Sbjct: 242 GHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEA 283
>gi|399043184|ref|ZP_10737609.1| ribonuclease D [Rhizobium sp. CF122]
gi|398058431|gb|EJL50329.1| ribonuclease D [Rhizobium sp. CF122]
Length = 381
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 14/229 (6%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
M+ T + +VD L + + P+ E+ +P KV H A +DI + G+ +FDT
Sbjct: 42 MASPTTEVLVDPLAKGLDLKPFF-ELMANPAVLKVFHAARQDIEIIYNRGGLIPHPIFDT 100
Query: 61 GQASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIY 119
A+ V + S + L++ GV +K + DW RPL ++ L YA D +L +Y
Sbjct: 101 QVAAMVCGFGDSVSYDQLVNRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVY 160
Query: 120 DIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQ 179
+K +L E E + L E D+ ++ ++++ L+ Q
Sbjct: 161 LYLKAEL-----EREGRSSWLRE----EMDILEARETYDMHPDDAWQR---LKMRLRKPQ 208
Query: 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
+LA++ + WR+ AR+ + VL + + E+A+Q P A L RL
Sbjct: 209 ELAILKYVAAWREREARSRNVPRSRVLKDDAIYEVAQQQPKDAEALGRL 257
>gi|295394778|ref|ZP_06804993.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
gi|294972374|gb|EFG48234.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
Length = 385
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 23/188 (12%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H A +D+ L G+ +FDT A+R+L ER L L GV KE+ D
Sbjct: 85 ILHAATQDLGCLAEK-GMRPDALFDTELAARLLNFERFGLASLTEEIMGVTLAKEHSAVD 143
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L ++ + +L + K ++ RQ
Sbjct: 144 WSTRPLPHEWLAYAALDVEVLNHLRTELADRLHAQGK----------------WEYARQE 187
Query: 155 YEKEL-----LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNR 209
++ L + + + +GL G A+ L V + RD + D + +LP+R
Sbjct: 188 FDHLLSFAPPVHDEPWRRTHGL-GRVKTARGLGRVRAMWALRDDLGEDRDVAPSRILPDR 246
Query: 210 TLIEIAKQ 217
+I +A +
Sbjct: 247 AMIALATE 254
>gi|422018217|ref|ZP_16364774.1| ribonuclease D [Providencia alcalifaciens Dmel2]
gi|414104509|gb|EKT66074.1| ribonuclease D [Providencia alcalifaciens Dmel2]
Length = 373
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 14/221 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D L L P+ + + +P + K +H D+ DFG M DT + L
Sbjct: 54 LIDPL-LMTDFSPF-KALLTNPNQLKFLHAGSEDLEVFMHDFGCVPEPMIDTQVLAAFLG 111
Query: 69 LERNS-LEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ L+ GV +K DW RPL ++ YA D YLL + I+ K+S
Sbjct: 112 YPISCGFATLVAEHLGVELDKSESRTDWLARPLSEKQCDYATADVLYLLPLAKILMEKVS 171
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
++ D V +R +K + E +YL I L +QLA + L
Sbjct: 172 EEGLLADAQDECQRIVARR---------QKTVKPEKAYLSITN--AWQLRDEQLACLQLL 220
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
WR A+A D + +V+ L ++A+ LP++ +L L
Sbjct: 221 AAWRLDQAKARDMAINFVIKEENLWKVARYLPSSLGELDAL 261
>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
Length = 416
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + ++H A +D+ L + G+ +FDT A+R+ R L ++ G NK++
Sbjct: 92 TAEWIVHAAAQDLPCLA-ELGLRPARLFDTELAARLAGYPRVGLAAMVEELLGFRLNKDH 150
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPK--------ESENSDTPLTE 142
DW RPLP+ LRYA D L+ + +I+ +L K E + P +
Sbjct: 151 ARVDWSRRPLPESWLRYAALDVEVLVELREILHTELQRQGKLRWAVEEFEHVRTAPPPSS 210
Query: 143 VYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDEST 202
+R V I+ ++G +QLAVV L RD AR D S
Sbjct: 211 PVERWRRVS---------------GIHQVRG----RRQLAVVRELWHARDRRARELDMSP 251
Query: 203 GYVLPNRTLIEIA 215
G VL + +I A
Sbjct: 252 GKVLSDSAIIRAA 264
>gi|387771659|ref|ZP_10127817.1| ribonuclease D [Haemophilus parahaemolyticus HK385]
gi|386908519|gb|EIJ73212.1| ribonuclease D [Haemophilus parahaemolyticus HK385]
Length = 372
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 12/201 (5%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERN-SLEYLLHHFCGV 84
+ D KV+H D+ + F + DT + L L + L+ H+ V
Sbjct: 73 LLADQDVAKVLHACSEDLEVFECAFNQLPTPLVDTQVMATFLNLGTSVGFAKLVLHYLDV 132
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVY 144
+K DW VRPL + L+YA D YLL IY M+ +L+ ++ ++ +
Sbjct: 133 ELDKGASRTDWLVRPLSETQLQYAAADVWYLLPIYQKMQAELAQTNWQNAVNEECSAFLT 192
Query: 145 KRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGY 204
KR C + +K +Y+ I L QQLAV+ L +WR A++ + + +
Sbjct: 193 KRE---CEEDLDK------AYIKISN--AWRLEPQQLAVLKLLAKWRAEEAQSRNLALNF 241
Query: 205 VLPNRTLIEIAKQLPTTAAKL 225
V+ L EIA+ LP ++L
Sbjct: 242 VVKESNLYEIARILPKNPSQL 262
>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
Length = 394
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 26/226 (11%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
V+D + + P L E+ DP KV H A +D+ FG +FDT A+ V
Sbjct: 63 VIDAQAEGLDLAP-LGELLADPKVTKVFHAARQDVEICILRFGAPPRPLFDTQIAAMVAG 121
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIM----- 122
++ S + L+ G +K ++ +DW RPL + YA D +L +Y +
Sbjct: 122 FGDQASYDSLVRALAGAQIDKAHRFSDWAARPLSPAQINYAAADVTHLRRVYTALVERLT 181
Query: 123 -KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+ +LS + +E P T Y++ + +E+ L+ N + L
Sbjct: 182 QEGRLSWVAEEMAELTDPAT--YRQDPETA---WER-------------LKPRSSNRRFL 223
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
A V L WR+ A+ + ++ + TL+EIA P+TAA+L R
Sbjct: 224 AAVQALAAWREREAQRVNIPRQRLVRDETLMEIAATSPSTAAELSR 269
>gi|333991066|ref|YP_004523680.1| hypothetical protein JDM601_2426 [Mycobacterium sp. JDM601]
gi|333487034|gb|AEF36426.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length = 420
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 15/202 (7%)
Query: 25 EVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGV 84
EV D + ++H AD+D+ L + G++ ++DT A R+ +R +L ++ G+
Sbjct: 98 EVLDD--DEWILHAADQDLACLA-EVGMWPKALYDTELAGRLAGFDRVNLAAMVQRLLGL 154
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEV- 143
K + ADW RPLP E L YA D L+ + + + LS K SD E
Sbjct: 155 GLAKGHGAADWSKRPLPAEWLNYAALDVEVLIELREAIAEVLSGQGK----SDWAAQEFS 210
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
+ RS D ++ S +H + + LA V L RD IA D + G
Sbjct: 211 HLRSTDFITS-TRRDRWRRTSGIHKV------RDRRGLAAVRELWTVRDRIAERRDIAPG 263
Query: 204 YVLPNRTLIEIAKQLPTTAAKL 225
+LP+ +I A PTT +L
Sbjct: 264 RILPDAAIIAAAVADPTTVDEL 285
>gi|375142577|ref|YP_005003226.1| ribonuclease D [Mycobacterium rhodesiae NBB3]
gi|359823198|gb|AEV76011.1| ribonuclease D [Mycobacterium rhodesiae NBB3]
Length = 428
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 31 TKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEY 90
T + V+H AD+D+ L + G+ ++DT A R+ ++ +L ++ G+ K +
Sbjct: 106 TGEWVLHAADQDLPCLA-EVGLRPTTLYDTELAGRLAGYDKVNLAAMVQRLLGLQLMKGH 164
Query: 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDV 150
ADW RPLP + L YA D LL + + L + K ++ + ++
Sbjct: 165 GAADWSKRPLPHDWLNYAALDVEVLLDLRHAIAAVLDAQNK---------SDWAAQEFEH 215
Query: 151 CRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
R ++E + + G+ + + LA V L RD IA+ D + G +LP+
Sbjct: 216 LR-MFEGAPTRRDRWRRTSGIHKI-RDPRALAAVRELWITRDRIAQRRDIAPGRILPDAA 273
Query: 211 LIEIAKQLPTTAAKLRRL 228
++ A P T KL L
Sbjct: 274 IVNAATADPDTVEKLTTL 291
>gi|407275534|ref|ZP_11104004.1| ribonuclease D [Rhodococcus sp. P14]
Length = 412
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H AD+D+ L + G+ ++DT A R+ +R L ++ G K + AD
Sbjct: 100 VLHSADQDLPGLD-ELGLRPAVLYDTELAGRLAGFDRVGLAAIVERTLGFELRKGHGAAD 158
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ- 153
W RPLPD L YA D L+ + D M +L K +E + ++ R+
Sbjct: 159 WSTRPLPDAWLNYAALDVEILVELRDAMADELERQGK---------SEWAAQEFEHIRRA 209
Query: 154 ---LYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
+ + S +H ++++LA+V L RD +A D + G VLP+
Sbjct: 210 GPPAPKPDRWRRTSRIHTLK------DSRRLAIVRELWTARDELAARRDIAPGRVLPDSA 263
Query: 211 LIEIAKQLPTTAAKLRRL 228
++ A+ P T +LR L
Sbjct: 264 IVAAAEAAPRTVEELRAL 281
>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
Length = 397
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ KD + KV+H D+ Q FG M DT + L ++ L+ F GV
Sbjct: 94 LLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAALVSEFVGV 153
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD-IMKIKLSSMPKESENSDTPLTEV 143
+ +K DW RPL + L YA D HYL+ +Y+ +++ + + E+ ++ L +V
Sbjct: 154 DLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQESDL-QV 212
Query: 144 YKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTG 203
KR ++ +N+YL I G L QQLA++ L WR A D +
Sbjct: 213 AKRI---------RKANPDNAYLDIKG--AWQLKPQQLAILRPLATWRLKEAIKRDLALN 261
Query: 204 YVLPNRTLIEIAK 216
+V + L +A+
Sbjct: 262 FVFKEQDLWAVAR 274
>gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
Length = 451
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 12/183 (6%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V+H A +D+ L + G+ +FDT A+R+ ER L L + G + K + AD
Sbjct: 136 VLHAASQDLYCLA-ELGLRPRRLFDTELAARLAGFERVGLAALTENLLGFSLEKHHSAAD 194
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP+ L YA D L+ + D + +L+ K ++ + R
Sbjct: 195 WSSRPLPESWLTYAALDVELLVELRDALDAELTRQGKAEWAAEE--------FAALVRNG 246
Query: 155 YEKELLSENSYLHIYGLQGA-GLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIE 213
+ + G+ G AQ A V L RD IA D + G VLP+ ++
Sbjct: 247 ARPPRVRAEPWRRTSGIHRVRGARAQ--ARVRSLWYARDQIAARRDAAPGRVLPDSAIVA 304
Query: 214 IAK 216
A+
Sbjct: 305 AAE 307
>gi|342905159|ref|ZP_08726949.1| Ribonuclease D [Haemophilus haemolyticus M21621]
gi|341951719|gb|EGT78275.1| Ribonuclease D [Haemophilus haemolyticus M21621]
Length = 380
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ + F M DT +R L L ++ L L + +
Sbjct: 77 LLSNPKVLKILHSCSEDLLVFLQKFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNI 136
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L+
Sbjct: 137 EIDKAATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALS 196
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I + LN +L+ + L +WR + D +
Sbjct: 197 KTHK--------LQERD--SEKAYLDIPNVW--KLNPLELSRLRILAQWRQNVGIERDLA 244
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 245 LSYIVKSDNLWKVAKNNPRNTSEM 268
>gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291]
Length = 416
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
++H AD+D+ L + G+ ++DT A R+ ER +L ++ G K + AD
Sbjct: 95 ILHSADQDLPCLA-EVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAAD 153
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQL 154
W RPLP E L YA D L+ + + L+ K T+ + +D R+
Sbjct: 154 WSKRPLPAEWLNYAALDVELLIELRAAIADVLAGQGK---------TDWAAQEFDYLREA 204
Query: 155 YEKE---LLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTL 211
KE + + G+ + + LA V L RD IA+ D + +LP+ +
Sbjct: 205 GSKEPGPAARRDRWRRTSGIHRV-RDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAI 263
Query: 212 IEIAKQLPTTAAKL 225
IE A PTT +L
Sbjct: 264 IEAALANPTTIEEL 277
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,214,617,044
Number of Sequences: 23463169
Number of extensions: 447449392
Number of successful extensions: 1098495
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 2078
Number of HSP's that attempted gapping in prelim test: 1092689
Number of HSP's gapped (non-prelim): 4934
length of query: 649
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 500
effective length of database: 8,863,183,186
effective search space: 4431591593000
effective search space used: 4431591593000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 80 (35.4 bits)