BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006352
(649 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF+VDTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++L + + L V++RS D+C + + K + ++ SYL +Y Q LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 238 bits (608), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S RTEDF++DTL+LR + L E DP KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
QA+R+L L R+SL++LL +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
M+++ M + L V++RS D+C + + K + ++ SYL +Y Q LN QQ
Sbjct: 450 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 506
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
L L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 152/261 (58%), Gaps = 21/261 (8%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R +D++VDTL+LR ++ L VF +P KV HGA DI+WLQRDFG+Y+ N+FDT
Sbjct: 261 ISNREKDWIVDTLELREELEA-LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDT 319
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
A++VL E + L +LL +C +A+K YQ ADWR+RPLP EML+YA+ DTHYLLYI+D
Sbjct: 320 YYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWD 379
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG----- 175
++ +L S K +E + + V+ S + + YE E Y IYGL G
Sbjct: 380 HLRNELIS--KSAERKENLMQSVFNSSKQISLRKYELE-----PYDPIYGLGTDGWRNVL 432
Query: 176 --------LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
+ + L + L +WRD +AR +DES YVLPNR LI IA P AA +
Sbjct: 433 TKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFS 492
Query: 228 LLKSKHSYIERYMGPVLSIIK 248
+ K Y+ ++ +++
Sbjct: 493 ISKQLTPIARMYVEDIVKVVQ 513
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 164/307 (53%), Gaps = 32/307 (10%)
Query: 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
+S R D++VDTLKLR + L EVF +P+ KV HGA DI+WLQRD G+Y+ +FDT
Sbjct: 256 ISTRERDYLVDTLKLRENLH-ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDT 314
Query: 61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
AS+ + L R+SL YLL +F +K+YQ ADWR+RPL M YAR DTH+LL IYD
Sbjct: 315 YHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE----------KELLS---ENSYLH 167
++ KL K L V S +V ++ +E E+ S + S
Sbjct: 375 QLRNKLIESNK--------LAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWK 426
Query: 168 IYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRR 227
I Q + ++ +V L +WRD+IAR DDES +V+PN+ L + PT +
Sbjct: 427 ILMYQ-YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVS 485
Query: 228 LLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSS 285
L ++ + + ++I+++++N N EE + S ET+ ++L+T S
Sbjct: 486 LTNGVTEHVRQNAKLLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETIS 538
Query: 286 NLKIPNV 292
+I +V
Sbjct: 539 VPQIRDV 545
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 7 DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV 66
++++D L +R GP+ E+ +DP KV+H D+ R G +FDT A+
Sbjct: 57 EWLIDPLLVR-DWGPF-AELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAY 114
Query: 67 LKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
L + +S+ Y L+ ++ K+ +DW RPL + +RYA +D +L +Y +
Sbjct: 115 LGMA-HSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDA 173
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 184
+LS E L + + ++CR+ +E E G L QQLAV+
Sbjct: 174 RLSE-----EKRAWLLEDGAELVANLCRESDPREAYREVKL-------GWRLRPQQLAVL 221
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
LC WR+ AR + +VL RTL +A+ LP
Sbjct: 222 RELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 26 VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNS-LEYLLHHFCGV 84
+ +P K++H D++ ++F M DT +R L L ++ L L + V
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNV 155
Query: 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKES---ENSDTPLT 141
+K +W RPL D L+YA D YLL +Y I++ +L+ P E ++ + L
Sbjct: 156 EIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLA 215
Query: 142 EVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDES 201
+ +K L E++ SE +YL I LN +L+ + L +WR +A D +
Sbjct: 216 KTHK--------LQERD--SEKAYLDIPN--AWKLNPLELSRLRVLAQWRQNVAIERDLA 263
Query: 202 TGYVLPNRTLIEIAKQLPTTAAKL 225
Y++ + L ++AK P +++
Sbjct: 264 LSYIVKSEHLWKVAKNNPRNTSEM 287
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
+++ +VD L + + P+ + K+ KV H A +DI + +FDT A+
Sbjct: 48 SDELIVDPLAPDLDLAPFY-ALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAA 106
Query: 65 RVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
V + E L+ G + +K + DW RPL D+ L+YA D YL IY+++
Sbjct: 107 MVCGFGDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLA 166
Query: 124 IKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKE------LLSENSYLHIYGLQGAGLN 177
+L+ KR++ V ++ + + EN++ + A
Sbjct: 167 KRLTHT---------------KRAHWVAEEMAVLQDPETYAMRPENAWKRV----KARFR 207
Query: 178 AQQ-LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
Q+ LAV+ + WR+ A+ D V+ + L EIA Q+P T + L
Sbjct: 208 GQRGLAVLVEVAAWRERQAQERDLPRSRVMKDDALAEIATQIPRTISDL 256
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 14/221 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
++D + + + P+ ++ + KV H A +DI + G+ +FDT A +
Sbjct: 75 LIDPISQDIDLKPFF-DLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSICG 133
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ S + ++ G +K + DW RPL ++ L YA D YL +Y ++K +L
Sbjct: 134 FGDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLE 193
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ D + ++YD + EN ++G ++LAV+ +
Sbjct: 194 KNKRTHWMDDEIAVLLEPKTYD----------MPENEAWK--KVKGKIKKPRELAVLQKI 241
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
WR+ AR + +++ + LIEIA Q P A L+RL
Sbjct: 242 AAWRERKARQYNIPRRHIIKDECLIEIAIQQPKDEADLKRL 282
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 14/218 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
V+DTL + + P + E+ DP KV H +DI FG MFDT A+ V
Sbjct: 63 VIDTLAPELDLAP-VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAG 121
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
++ + L+ G + +K ++ +DW RPL + YA D +L +Y+ ++ +L
Sbjct: 122 FGDQVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRL- 180
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
E E ++E D + + E L+ N + L ++ +
Sbjct: 181 ----EKEGRLAWVSEEMAVLNDPATYRTDPVTMWER-------LRPRTNNRRYLGLLRAI 229
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
C WR+V A+ + ++ + +L+EIA P A L
Sbjct: 230 CAWREVEAQRLNIPRQRLIKDESLLEIAATSPADAESL 267
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 96/227 (42%), Gaps = 20/227 (8%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA--DRDIVW-LQRDFGIYLCNMFDTGQ 62
E VD L + + P L E+ DP KV H A D +IVW L + I +FDT
Sbjct: 49 EAVAVDALASGLDLAP-LFELMADPAVVKVFHAARQDLEIVWNLAK---IIPAPLFDTQV 104
Query: 63 ASRVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 121
A+ V ++ S L+ C V+ +K + DW RPL + YA D YL IY I
Sbjct: 105 AAMVCGFGDQVSYGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAI 164
Query: 122 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
++ KL + SD +Y E +N++ + + L
Sbjct: 165 LQDKLKETGRLGWLSDEMALLTSPATY---------EQHPDNAWER---FRNRVRKPRDL 212
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
V+ + WR+ A+A D +L + LIE+A P +A L L
Sbjct: 213 GVLMEVAGWREAEAQARDVPRSRILKDDVLIELALAAPRSADALGNL 259
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 35 VMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNAD 94
V H D+ +L R +GI+ FDT AS +L ER+SL +++ + G + +K YQ +D
Sbjct: 71 VGHNLKFDLKYLYR-YGIFPSATFDTMIASYLLGYERHSLNHIVSNLLGYSMDKSYQTSD 129
Query: 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKE 132
W L D L+YA D L ++ M+ L+ + E
Sbjct: 130 WGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAE 167
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 20/221 (9%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVL- 67
++D L + V P+ ++ DP K +H D+ FG+ DT L
Sbjct: 54 LIDPLSITVW-QPFC-DLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLG 111
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
K L+ + V +K DW RPL ++ +YA D +YLL M I+L
Sbjct: 112 KPLSYGFAALVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLL----PMAIRLV 167
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKE---LLSENSYLHIYGLQGAGLNAQQLAVV 184
+T ++ + D CRQL +++ L E +Y I L + LA +
Sbjct: 168 --------EETTSAGWWEAALDECRQLCQRKQDVLAPEQAYREIGN--AWQLKGRHLACL 217
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
L +WR AR D + +++ L ++A+ LP + +L
Sbjct: 218 QKLADWRLRKARERDSAVNFIVREEHLGQVARYLPGSLGEL 258
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 14/233 (6%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E VVDTL + + P L + DP KV H A +D+ FG +FDT A+
Sbjct: 60 EVVVVDTLAPGIDLAP-LGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFDTQVAAM 118
Query: 66 VLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124
V ++ + L+ G + +K ++ +DW RPL + + YA D +L +Y ++
Sbjct: 119 VAGFGDQVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLE 178
Query: 125 KLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVV 184
+L E E + D + E L E ++ N + L V+
Sbjct: 179 RL-----EREGRLDWVASDLAVLSDPATFRPDPETLWER-------MRPRTSNRRMLGVL 226
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIE 237
+ WR+ A+ + +L + +L+EIA P L R+ + E
Sbjct: 227 RAITAWREREAQRVNVPRQRLLKDESLLEIAATAPADVDALARIRGVSRGFAE 279
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 26/227 (11%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLK 68
V+D + + P L +F +P KV H +DI FG +FDT A+ V
Sbjct: 61 VIDAQAEGLDLAP-LGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLFDTQVAAMVAG 119
Query: 69 L-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
++ + L+ G +K ++ +DW RPL + YA D +L +Y+ ++ +L+
Sbjct: 120 FGDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLT 179
Query: 128 S------MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+ +E+ P T Y E E+++ L+ G N +QL
Sbjct: 180 REGRLDWVAEEAAVLADPAT-------------YRTE--PEDAWRR---LKLRGGNRRQL 221
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
A+V + WR+ A + ++ + + E+A P A L R+
Sbjct: 222 ALVKAIAAWREREAMRVNVPRQRIVRDEQIPELAALAPADAEGLTRV 268
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKLERNSLEYLLHHF 81
L+ + +DP+ K +H D+ FG + DT A+ + ++ +
Sbjct: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125
Query: 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLT 141
GV +K DW RPL + YA D YLL I + + E+E S
Sbjct: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV-------ETEASGW--- 175
Query: 142 EVYKRSYDVCR--QLYEKELLS-ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARAD 198
+ D CR Q+ +E+++ E+++ I L +QLA + L +WR AR
Sbjct: 176 --LPAALDECRLMQMRRQEVVAPEDAWRDITN--AWQLRTRQLACLQLLADWRLRKARER 231
Query: 199 DESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
D + +V+ L +A+ +P + +L L
Sbjct: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL 261
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 21/232 (9%)
Query: 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQAS 64
T+ ++D L + + P L E+F++ KV H A +D+ + G+ +FDT A+
Sbjct: 53 TDAVLIDPLAEGLSLEP-LYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAA 111
Query: 65 RVLKL-ERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123
V ++ E L+ N +K + DW RPL D YA D YL IY+ +
Sbjct: 112 MVCGFGDQVGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLS 171
Query: 124 IKLSSMPKES--ENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+L+ + E LT D EN++ + +G + +
Sbjct: 172 AELARTDRTHWLEEELAQLTNADAYVVD-----------PENAWKRLKLRSNSG---RVV 217
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL---RRLLK 230
A+ L +R+ A+ + VL + L+E+A P T A L R LL+
Sbjct: 218 AIAQQLAAFRETYAQEKNVPRNRVLKDDALLELAGTKPKTVADLGKSRLLLR 269
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 20/221 (9%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVL 67
++D L + + P+ + + +D K +H D+ Q FG+ DT AS V
Sbjct: 50 LIDPLTI-TEWAPF-QALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVG 107
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
L+ H GV +K DW RPL + YA D YLL I KL
Sbjct: 108 HPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAH----KLM 163
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEK--ELLS-ENSYLHIYGLQGAGLNAQQLAVV 184
+E+ + E CR + ++ E+L + ++ I L +QLA +
Sbjct: 164 EQVREAGWLTAAINE--------CRLMTQRRGEVLDPDEAWREITN--AWQLRPRQLACL 213
Query: 185 AGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
L WR AR D + +V+ L ++A+ +P + +L
Sbjct: 214 KLLAGWRLRKARERDMAVNFVVREENLWKVARHMPGSLGEL 254
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 25/222 (11%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASR 65
E + +D L ++ + P L E+ D K++H A +D++ + + G N+FDT A+
Sbjct: 53 ECYAIDPLSIK-DLSP-LGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAG 110
Query: 66 VL-KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYL-----LYIY 119
+ SL L+ +K +W RPL ++ L Y+ D YL + +
Sbjct: 111 FAGSISTISLLQLVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLS 170
Query: 120 DIMKIKLSSMPKESENS-DTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNA 178
I+ K+ S +E N + P Y D E+ Y + G+ L+
Sbjct: 171 KIIGPKIKSWLQEELNLLNNPAN--YSTIAD------------ESRYKKVKGVNK--LDR 214
Query: 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPT 220
+ + V + WR+ AR + G+V+ + L+EIA PT
Sbjct: 215 KSIGVAQEIATWREQKARELNRPRGHVIKDDILLEIAAIRPT 256
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 20/227 (8%)
Query: 6 EDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDI--VWLQRDFGIYLCNMFDTGQA 63
E VVD L + + P+ ++ + KV H A +DI VW Q GI +FDT A
Sbjct: 49 EAVVVDALAEGIDLKPFF-DLMSNERVLKVFHAARQDIEIVWHQA--GIIPHPIFDTQVA 105
Query: 64 SRVLKLERNSLEY--LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDI 121
+ VL +S+ Y L+ G +K ++ DW RPL + L YA D +L ++
Sbjct: 106 AMVLGYG-DSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAA 164
Query: 122 MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL 181
+ L + S+ ++YD + E E L+ + L
Sbjct: 165 LDADLKKRGRGDWVSEEMEVLTSPKTYD-----FHPERAWER-------LKTRVRKPKDL 212
Query: 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
AV+ + WR+ A++ + VL + + +IA P T +L L
Sbjct: 213 AVMMEVAAWREQEAQSRNIPRSRVLKDDAVGDIAIHAPATPERLATL 259
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 14/221 (6%)
Query: 9 VVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVL 67
++D L ++ Q P++ E+ + K +H D+ F M DT A+
Sbjct: 54 LIDPLPIK-QWQPFI-ELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTG 111
Query: 68 KLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
+ L+ + V +K DW RPL ++ YA D YLL + + +
Sbjct: 112 RPMSCGFATLVAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETE 171
Query: 128 SMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGL 187
+ S+ L +RS + +L +E+ N++ L +QL + L
Sbjct: 172 EAGWTAAASNECLLLCQRRSETLAPELAYREI--TNAW---------QLRPRQLGCLQKL 220
Query: 188 CEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 228
EWR AR D + +V+ L ++A+ +PT+ +L L
Sbjct: 221 AEWRLRQARERDLAVNFVVREENLWQVARHMPTSLGELDSL 261
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHH 80
L+E KVMH A D+V + G+ +FDT Q + L + Y L+
Sbjct: 64 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDT-QIAAALAGVGGGMGYQKLVQE 122
Query: 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127
G K +DW RPL L YA +D YL I+D + +L+
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLT 169
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 94 DWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQ 153
DW RPL + L YA D YL +Y + KL + + L +Y+ +
Sbjct: 158 DWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDR--------LGWLYEEG----ER 205
Query: 154 LYEKELLS---ENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRT 210
+ E L + + +YL + L QLA + L +WR A A D + G+V+ +
Sbjct: 206 MTEGRLATPDMDTAYLRVKN--AFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDHG 263
Query: 211 LIEIAKQLPTTAAKLRRL 228
LI +AK+ P + L +L
Sbjct: 264 LIALAKKQPKSMGDLLKL 281
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 13/210 (6%)
Query: 17 VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLE 75
+ + P L + + KV H +D+ + G +FDT A+ L L E+
Sbjct: 63 LDLSPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIGYG 122
Query: 76 YLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESEN 135
L+ + GV +K + DW RPL + YA D YL+ I+ M +L + +
Sbjct: 123 NLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEEL----RRTGR 178
Query: 136 SDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 195
D L + +R D YE + E ++ + + A A L + L WR++ A
Sbjct: 179 GDW-LDQEMERISDPSN--YENK--PEEAWQRV---RIASRKADVLGRLKALAAWREMEA 230
Query: 196 RADDESTGYVLPNRTLIEIAKQLPTTAAKL 225
+ + G ++ + TL +IA P T L
Sbjct: 231 QDKNLPRGRIVKDETLADIASHPPRTQEDL 260
>sp|Q2JB35|LIPB_FRASC Octanoyltransferase OS=Frankia sp. (strain CcI3) GN=lipB PE=3 SV=1
Length = 221
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 294 RESVDGVDALVGTTMPHPPAYTQLKQEPPK------VGSSVAELDRNGLGSFAHPGEAIA 347
RE +DGV + HPP YT K+ PP+ +G V E +R GL ++ PG+ +
Sbjct: 9 RERIDGVRPDTLWFLSHPPVYTVGKRTPPEHRPLAGLGIPVHETNRGGLLTYHAPGQLVG 68
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 36.2 bits (82), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 83 GVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSM 129
G +K Q ++W RPL E LRYA D LL IYD ++ +L+ +
Sbjct: 585 GKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTHI 631
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 13/187 (6%)
Query: 34 KVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKL-ERNSLEYLLHHFCGVNANKEYQN 92
KV H +D+ + G +FDT A+ L + E+ L+ + + +K +
Sbjct: 80 KVFHAGGQDLEIILHHTGKMPFPLFDTQIAAMALGVGEQVGYSNLVERYLSIKLDKGARF 139
Query: 93 ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCR 152
DW RPL L YA D +L ++ ++ +L + L + +R D +
Sbjct: 140 TDWSHRPLDRRQLDYAIADVTHLATLFPMLLKEL-----RDKGRGAWLDQEMERLADPSQ 194
Query: 153 QLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLI 212
+ + E S+L I + A L + L WR++ A+ + G + + TL
Sbjct: 195 YIND----PEKSWLRI---RMPNRKADILGRLKALAAWREIEAQNRNIPRGRIAKDETLA 247
Query: 213 EIAKQLP 219
++A P
Sbjct: 248 DLAIHPP 254
>sp|A1SVE6|RND_PSYIN Ribonuclease D OS=Psychromonas ingrahamii (strain 37) GN=rnd PE=3
SV=1
Length = 369
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 32 KKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY--LLHHFCGVNANKE 89
K ++H + D+ ++ G +FDT A L + SL Y ++ V +K
Sbjct: 72 KNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGA-SLGYAKMVETLEAVIVDKG 130
Query: 90 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDT-PLTEVYKRSY 148
DW RPL ++ + YA D YL + L + ++ EN P E
Sbjct: 131 ESRTDWCARPLSEKQINYAGVDVLYL-------QPCLEKLQQQLENKKMFPFFE------ 177
Query: 149 DVCRQLYEKELLSEN---SYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYV 205
C+ + ++++ ++ +Y + L L+ Q LA++ L +WR + A+ + + +V
Sbjct: 178 QECQSVLAQKMVKQDPDKAYKLLNNL--FKLDRQGLAIIKALAKWRLLTAQERNLALNFV 235
Query: 206 LPNRTLIEIAKQLPTT 221
+ L +A PT+
Sbjct: 236 VKADHLWLLAYYQPTS 251
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGIY---LCNMFDTGQASRVLKLERNS--LEYL 77
LR ++ D T VMH D + R G++ CN+FDT A+ +L +R + ++ L
Sbjct: 478 LRRLWNDETLTLVMHNGKFDYHVMHRA-GVFEHCACNIFDTMVAAWLLDPDRGTYGMDVL 536
Query: 78 LHHFCGVNA--NKEYQNADWRVRPLPDEM-LRYAREDTHYLLYIYDIMKIKL--SSMPKE 132
F + +E +P E +RYA ED +Y +K++L + +
Sbjct: 537 AASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSV 596
Query: 133 SENSDTPLTEVYKRSYDV 150
E + PL + R +V
Sbjct: 597 FETIEMPLLPILARMEEV 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,028,431
Number of Sequences: 539616
Number of extensions: 10838211
Number of successful extensions: 27639
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 27441
Number of HSP's gapped (non-prelim): 260
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)