Query 006352
Match_columns 649
No_of_seqs 275 out of 1834
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 2.1E-43 7.3E-48 382.8 23.2 259 1-263 153-411 (428)
2 2hbj_A Exosome complex exonucl 100.0 5.8E-41 2E-45 361.6 19.7 243 1-254 130-386 (410)
3 1yt3_A Ribonuclease D, RNAse D 100.0 7.1E-39 2.4E-43 340.2 25.9 240 1-254 46-286 (375)
4 3cym_A Uncharacterized protein 100.0 3E-36 1E-40 327.6 15.8 241 1-255 62-327 (440)
5 1vk0_A Hypothetical protein; h 99.8 3.5E-21 1.2E-25 190.5 9.8 122 1-124 78-205 (206)
6 2e6m_A Werner syndrome ATP-dep 99.8 8.8E-21 3E-25 184.6 10.6 129 1-130 66-199 (208)
7 1wud_A ATP-dependent DNA helic 99.6 3.5E-15 1.2E-19 129.5 7.8 75 178-252 10-84 (89)
8 2rhf_A DNA helicase RECQ; HRDC 99.6 7.4E-15 2.5E-19 123.8 8.2 72 180-251 4-75 (77)
9 2kv2_A Bloom syndrome protein; 99.5 3.6E-14 1.2E-18 122.0 9.0 74 178-251 4-77 (85)
10 2rrd_A BLM HRDC domain, HRDC d 99.5 4.6E-14 1.6E-18 125.5 9.3 73 178-250 19-91 (101)
11 3pv8_A DNA polymerase I; DNA p 99.4 7E-13 2.4E-17 149.3 15.3 126 2-130 54-185 (592)
12 2e1f_A Werner syndrome ATP-dep 99.4 2E-13 6.9E-18 121.8 8.4 72 179-251 13-84 (103)
13 2dgz_A Werner syndrome protein 99.4 2.4E-13 8.2E-18 123.3 8.3 72 179-251 20-91 (113)
14 2kfn_A Klenow fragment of DNA 99.2 1.7E-11 5.9E-16 138.0 11.6 106 21-128 80-195 (605)
15 1x9m_A DNA polymerase; DNA plo 99.0 1.4E-10 4.7E-15 132.8 3.3 122 5-130 29-187 (698)
16 4dfk_A DNA polymerase I, therm 98.5 1.9E-07 6.7E-12 104.2 10.2 94 2-126 35-128 (540)
17 1bgx_T TAQ DNA polymerase; DNA 97.4 0.00021 7.3E-09 83.6 8.5 82 21-127 340-421 (832)
18 3v9w_A Ribonuclease T; DEDD nu 96.7 0.0021 7.1E-08 63.3 6.4 94 21-130 117-225 (235)
19 1d8b_A SGS1 RECQ helicase; fiv 96.0 0.013 4.5E-07 50.2 6.6 67 182-248 7-75 (81)
20 2f96_A Ribonuclease T; RNAse, 93.6 0.18 6.3E-06 49.1 8.4 85 31-131 126-218 (224)
21 3mxm_B Three prime repair exon 93.3 0.16 5.6E-06 50.5 7.5 91 21-127 106-216 (242)
22 1y97_A Three prime repair exon 93.2 0.27 9.3E-06 48.0 8.8 91 21-127 101-211 (238)
23 1wlj_A Interferon stimulated g 92.4 0.36 1.2E-05 45.9 8.2 93 21-130 75-173 (189)
24 2p1j_A POLIII, DNA polymerase 91.8 0.36 1.2E-05 45.7 7.5 86 21-125 84-175 (186)
25 3u3y_B Three prime repair exon 91.0 0.64 2.2E-05 48.7 8.9 91 21-127 106-216 (314)
26 2gui_A DNA polymerase III epsi 89.7 1.3 4.5E-05 41.8 9.2 87 21-124 87-183 (194)
27 1zbh_A 3'-5' exonuclease ERI1; 80.6 6.7 0.00023 40.0 9.8 90 21-126 158-263 (299)
28 1w0h_A 3'-5' exonuclease ERI1; 75.6 10 0.00035 35.7 8.8 89 22-126 91-195 (204)
29 1zbu_A ERI-1 homolog, 3'-5' ex 75.5 11 0.00036 39.8 9.7 90 21-126 208-313 (349)
30 3cym_A Uncharacterized protein 75.4 6.8 0.00023 42.5 8.4 71 178-248 360-433 (440)
31 2qxf_A Exodeoxyribonuclease I; 67.8 14 0.00047 40.7 8.8 86 22-124 87-199 (482)
32 1yt3_A Ribonuclease D, RNAse D 52.8 5.7 0.0002 41.7 2.3 68 178-248 301-371 (375)
33 3cg7_A CRN-4, cell death-relat 36.4 27 0.00092 35.8 4.2 88 22-125 101-208 (308)
34 2xri_A ERI1 exoribonuclease 3; 36.0 74 0.0025 30.6 7.1 85 21-124 109-212 (224)
35 1go3_F DNA-directed RNA polyme 35.5 22 0.00074 31.5 2.9 42 206-249 64-105 (107)
36 3ikm_A DNA polymerase subunit 33.9 41 0.0014 40.8 5.6 97 32-129 195-350 (1172)
37 3ayh_A DNA-directed RNA polyme 27.0 90 0.0031 28.5 5.6 48 203-250 86-134 (136)
38 4gmj_B CCR4-NOT transcription 26.8 1.2E+02 0.004 31.2 7.0 84 28-128 147-247 (285)
39 2c35_A Human RPB4, DNA-directe 25.8 87 0.003 29.3 5.3 48 204-251 100-148 (152)
40 3d45_A Poly(A)-specific ribonu 22.2 98 0.0034 34.1 5.8 102 23-127 268-393 (507)
41 1noy_A Protein (DNA polymerase 21.4 78 0.0027 33.3 4.6 63 57-121 267-334 (388)
42 1qht_A Protein (DNA polymerase 21.1 1.5E+02 0.0051 34.3 7.2 102 21-123 192-327 (775)
43 2a1r_A Poly(A)-specific ribonu 20.6 1.2E+02 0.0043 32.6 6.0 106 23-128 273-399 (430)
44 1y14_A B32, RPB4, DNA-directed 20.2 1.3E+02 0.0043 29.4 5.4 48 204-251 136-184 (187)
45 2igi_A Oligoribonuclease; RNAs 20.1 2.1E+02 0.0074 26.0 6.8 81 21-126 86-177 (180)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=2.1e-43 Score=382.77 Aligned_cols=259 Identities=44% Similarity=0.758 Sum_probs=231.4
Q ss_pred CCCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHH
Q 006352 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 80 (649)
Q Consensus 1 IST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~ 80 (649)
|||.+.+|+||++.+...+ ..|+++|+|++|.||+|++++|+.+|++++|+.+.++|||++|+|+|+++.+||+.|+++
T Consensus 153 La~~~~~~lidpl~l~~~l-~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~ 231 (428)
T 3saf_A 153 ISTRTEDFIIDTLELRSDM-YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKL 231 (428)
T ss_dssp EECSSCEEEEETTTTGGGG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHH
T ss_pred EEeCCcEEEEEeccchhhH-HHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHH
Confidence 5788899999999986455 469999999999999999999999998899999999999999999999988999999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 006352 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL 160 (649)
Q Consensus 81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~ke~~ 160 (649)
|||++++|+.+++||..|||+++|+.|||.||+||+.||+.|..+|.+.|+. ...|+..++..+...|.+.|.++..
T Consensus 232 ~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (428)
T 3saf_A 232 YCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG---QPVQLQVVWQRSRDICLKKFIKPIF 308 (428)
T ss_dssp HHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred HcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999987731 2358888888877777766655445
Q ss_pred ChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhH
Q 006352 161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240 (649)
Q Consensus 161 ~e~~y~~i~g~~~~~L~~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryG 240 (649)
....|..+++...+.++++|+++|++|+.||+++||++|+|+++||+|.+|++||+++|+|..+|.+|.|++...+++||
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g 388 (428)
T 3saf_A 309 TDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQI 388 (428)
T ss_dssp CTTGGGHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTH
T ss_pred CcccHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHH
Confidence 55667776543346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHH
Q 006352 241 GPVLSIIKNSMQNAANFEVIAQK 263 (649)
Q Consensus 241 deIL~iI~~ale~~~~~e~~~~~ 263 (649)
++||++|+++.+.|-........
T Consensus 389 ~~~l~~I~~a~~~p~~~~~~~~~ 411 (428)
T 3saf_A 389 NEMHLLIQQAREMPLLKSEVAAG 411 (428)
T ss_dssp HHHHHHHHHHHTSCCCHHHHCC-
T ss_pred HHHHHHHHHHHhCCCcCcchhhh
Confidence 99999999999988766665444
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=5.8e-41 Score=361.56 Aligned_cols=243 Identities=37% Similarity=0.619 Sum_probs=214.6
Q ss_pred CCCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHH
Q 006352 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH 80 (649)
Q Consensus 1 IST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~ 80 (649)
|||.+.+||||++.+...+ ..|+++|+|+.|.||+|++++|+.+|++++|+.+.++|||++|+|+|+++.+||+.|+++
T Consensus 130 la~~~~~ylid~l~l~~~l-~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~~~ 208 (410)
T 2hbj_A 130 ISTRERDYLVDTLKLRENL-HILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN 208 (410)
T ss_dssp EECSSCEEEEETTTTTTTG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHH
T ss_pred EEECCcEEEEechhhhhhH-HHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCCccCHHHHHHH
Confidence 5677889999987764334 469999999999999999999999998889999999999999999999988999999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhh---
Q 006352 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK--- 157 (649)
Q Consensus 81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~k--- 157 (649)
|||+.++|+.+++||..|||+++|+.|||.||+||+.||+.|..+|.+.| ...|+.+.|+ .+|.+.|+.
T Consensus 209 ~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g-----~~~~~~~e~~---~l~~~~~~~~~~ 280 (410)
T 2hbj_A 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESN-----KLAGVLYESR---NVAKRRFEYSKY 280 (410)
T ss_dssp HSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----CHHHHHHHHH---HHHHCEECCGGG
T ss_pred HcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----chHhHHHHHH---HHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999876 3467766664 345443321
Q ss_pred -----------hccChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHH
Q 006352 158 -----------ELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLR 226 (649)
Q Consensus 158 -----------e~~~e~~y~~i~g~~~~~L~~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~ 226 (649)
...++..|+++.+. +.|+++++++|++|++||+++||++|+|+++||+|.+|++||+++|+|.++|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~ 358 (410)
T 2hbj_A 281 RPLTPSSEVYSPIEKESPWKILMYQ--YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVV 358 (410)
T ss_dssp CCSSCCSSEECCCCSSSSSSSCSSC--SCCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHH
T ss_pred cccccccccccCCchhHHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHH
Confidence 11234568887764 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhcCChhHHHHhHHHHHHHHHHHHhcc
Q 006352 227 RLLKSKHSYIERYMGPVLSIIKNSMQNA 254 (649)
Q Consensus 227 ~i~g~~~~~vrryGdeIL~iI~~ale~~ 254 (649)
+|.|++...+++||++|+++|+++++.+
T Consensus 359 ~i~g~~~~~~~~~g~~~l~~I~~~~~~~ 386 (410)
T 2hbj_A 359 SLTNGVTEHVRQNAKLLANLIRDALRNI 386 (410)
T ss_dssp TCTTCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987754
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=7.1e-39 Score=340.17 Aligned_cols=240 Identities=20% Similarity=0.290 Sum_probs=211.8
Q ss_pred CCCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCC-CCcHHHHHH
Q 006352 1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLE-RNSLEYLLH 79 (649)
Q Consensus 1 IST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~-~~sLa~LVe 79 (649)
|+|.+.+||||+..+. ++ ..|+++|+|++|.||+|++++|+.+|++++|+.+.++|||++|+|+|++. .+||+.|++
T Consensus 46 la~~~~~~lid~~~l~-~~-~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~ 123 (375)
T 1yt3_A 46 LFDGEHLALIDPLGIT-DW-SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 (375)
T ss_dssp EECSSCEEEECGGGCS-CC-HHHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHH
T ss_pred EecCCcEEEEeCCCCC-Ch-HHHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHH
Confidence 4677789999987663 34 56999999999999999999999999888999999999999999999997 699999999
Q ss_pred HHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhhc
Q 006352 80 HFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKEL 159 (649)
Q Consensus 80 ~~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~ke~ 159 (649)
+|||+.++|+.+++||..|||+++|+.||+.||+|++.||+.|..+|.+.| ...|+.+.++. .+...+. ..
T Consensus 124 ~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g-----~~~l~~~e~E~---pl~~~~~-~~ 194 (375)
T 1yt3_A 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----WLPAALDECRL---MQMRRQE-VV 194 (375)
T ss_dssp HHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-----CHHHHHHHHHH---HHHHHHC-CC
T ss_pred HHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHH---HHhhccc-CC
Confidence 999999999999999999999999999999999999999999999999876 34564444432 2222222 23
Q ss_pred cChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHh
Q 006352 160 LSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERY 239 (649)
Q Consensus 160 ~~e~~y~~i~g~~~~~L~~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrry 239 (649)
.++..|+++++. +.|+++++++|++|+.||+++|+++|+||++||+|.+|++||+++|+|.++|.++ |++...+++|
T Consensus 195 ~~~~~~~~~~~~--~~l~~~~~~~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~ 271 (375)
T 1yt3_A 195 APEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFH 271 (375)
T ss_dssp CGGGGGGGSTTG--GGSCHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHH
T ss_pred CchHHHHhccCc--ccCCHHHHHHHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHH
Confidence 456779888774 6889999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 006352 240 MGPVLSIIKNSMQNA 254 (649)
Q Consensus 240 GdeIL~iI~~ale~~ 254 (649)
|+.|+++|+.+.+.+
T Consensus 272 g~~~l~~i~~~~~~~ 286 (375)
T 1yt3_A 272 GKTLLALVEKAQTLP 286 (375)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998765
No 4
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=100.00 E-value=3e-36 Score=327.61 Aligned_cols=241 Identities=23% Similarity=0.319 Sum_probs=204.3
Q ss_pred CCCCC-ceEEEeCCCcc---hhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHH
Q 006352 1 MSLRT-EDFVVDTLKLR---VQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEY 76 (649)
Q Consensus 1 IST~~-~~yLID~Lal~---~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~ 76 (649)
|||.+ .+|+||++.+. .++ ..|+++|+|+ .||+|++++|+.+|+ ++|+.+.++|||++|+|+|++..+||+.
T Consensus 62 la~~~~~~~lid~l~~~~~~~~l-~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL~~ 137 (440)
T 3cym_A 62 FKRDGAGIGLLDPQALAAAGADW-NDFNRAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGLAA 137 (440)
T ss_dssp EEEETTEEEEECHHHHHHTTCCH-HHHHHHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSHHH
T ss_pred EEECCCcEEEEEcCCccccccCH-HHHHHHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCCCCCHHH
Confidence 45544 48999996532 234 4699999997 699999999999995 9999999999999999999987899999
Q ss_pred HHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 006352 77 LLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYE 156 (649)
Q Consensus 77 LVe~~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~ 156 (649)
|+++|||+.++|+.+++||..|||+++|+.||+.||+||+.||+.|..+|.+.| ...|+.++|.. +|...+.
T Consensus 138 L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g-----~~~l~~~e~~~---l~~~~~~ 209 (440)
T 3cym_A 138 VTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQG-----KMEWAQEEFDY---ALKEGLG 209 (440)
T ss_dssp HHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----CHHHHHHHHHH---HHHHHSS
T ss_pred HHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----cHHHHHHHHHH---Hhccccc
Confidence 999999999999999999999999999999999999999999999999999876 34676666643 3433322
Q ss_pred hhccChhHHHHHhcccCCCC--CHHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChh
Q 006352 157 KELLSENSYLHIYGLQGAGL--NAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHS 234 (649)
Q Consensus 157 ke~~~e~~y~~i~g~~~~~L--~~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~ 234 (649)
++......|+++++. +.+ +++|+++|++|+.||+++|+++|+|+++||+|++|++||+++|+|.++|.++.|++..
T Consensus 210 ~~~~~~~~~~~~~~~--~~l~~~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~ 287 (440)
T 3cym_A 210 PRKEHLIPWMHVSHI--TEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINER 287 (440)
T ss_dssp SCCCCSSGGGCCTTG--GGGTTCHHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSC
T ss_pred cCCCchHHHHHhccc--cccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCch
Confidence 123334567666553 355 8999999999999999999999999999999999999999999999999999887665
Q ss_pred HH------------------HH-hHHHHHHHHHHHHhccc
Q 006352 235 YI------------------ER-YMGPVLSIIKNSMQNAA 255 (649)
Q Consensus 235 ~v------------------rr-yGdeIL~iI~~ale~~~ 255 (649)
.+ ++ ||+.|+++|+++++.++
T Consensus 288 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~i~~~~~~~~ 327 (440)
T 3cym_A 288 VRIHTDSEQDKMFERYAPIQRKIKPSMWKNIIQDALALPP 327 (440)
T ss_dssp CCCCCSSTHHHHHHTTHHHHTTSCHHHHHHHHHHHHTSCG
T ss_pred heecccchhhhhhcccchhhhhhhHHHHHHHHHHHHhCCH
Confidence 55 87 99999999999988653
No 5
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.84 E-value=3.5e-21 Score=190.54 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=107.5
Q ss_pred CCCCCceEEEeCC-CcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHH-HHHHHhCC---CCCcHH
Q 006352 1 MSLRTEDFVVDTL-KLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTG-QASRVLKL---ERNSLE 75 (649)
Q Consensus 1 IST~~~~yLID~L-al~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTq-IAA~LLg~---~~~sLa 75 (649)
|||.+.++|||+. .+...+ ..|+.+|+||+|.||+|++++|+..|+++||+.+.++|||+ +|+.++|. ..+||+
T Consensus 78 la~~~~~~l~~l~~~~~~~L-~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~ 156 (206)
T 1vk0_A 78 LSTRNLCLFLRLPKPFHDNL-KDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTR 156 (206)
T ss_dssp EECSSEEEEEECCSSCCGGG-HHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHH
T ss_pred EecCCCeEEEeccccCCccH-HHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHH
Confidence 5788899999982 122244 24889999999999999999999999999999999999997 88888886 268999
Q ss_pred HHHHHHcCCCC-CcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006352 76 YLLHHFCGVNA-NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124 (649)
Q Consensus 76 ~LVe~~LGv~L-dK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 124 (649)
.|++++||+.+ +|..++|||.. |||++|+.|||.||+|++.||+.|.+
T Consensus 157 ~Lv~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 157 ELAHRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999 44669999999 99999999999999999999999864
No 6
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.83 E-value=8.8e-21 Score=184.60 Aligned_cols=129 Identities=23% Similarity=0.295 Sum_probs=111.9
Q ss_pred CCCC-CceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccch-HHHHHHHhCCC-CCcHHHH
Q 006352 1 MSLR-TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFD-TGQASRVLKLE-RNSLEYL 77 (649)
Q Consensus 1 IST~-~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFD-TqIAA~LLg~~-~~sLa~L 77 (649)
|||. +.+|+||+..+.. +...|+++|+|+.|.||+|++++|+.+|++++|+.+.++|| |++|+|+|++. .+||+.|
T Consensus 66 la~~~~~~~~i~~~~~~~-~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L 144 (208)
T 2e6m_A 66 LCVSESKCYLFHISSMSV-FPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGL 144 (208)
T ss_dssp EECSSSEEEEECGGGCSS-CCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHH
T ss_pred EecCCCeEEEEECccccc-chHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHH
Confidence 4554 5789999876642 33569999999999999999999999998889999999999 99999999984 6899999
Q ss_pred HHHHcCCCCCc--ccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 006352 78 LHHFCGVNANK--EYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 130 (649)
Q Consensus 78 Ve~~LGv~LdK--~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~g 130 (649)
+++|||..+.| ..+.+||..|||+++|+.|||.||++++.||+.|..+|.+.+
T Consensus 145 ~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~ 199 (208)
T 2e6m_A 145 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQ 199 (208)
T ss_dssp HHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999854 568999999999999999999999999999999999998766
No 7
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.57 E-value=3.5e-15 Score=129.48 Aligned_cols=75 Identities=25% Similarity=0.363 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHHHh
Q 006352 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQ 252 (649)
Q Consensus 178 ~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~ale 252 (649)
+.++++|++|+.||+++|+++|+||++||+|.+|++||+.+|+|.++|..|.|++...+++||+.||++|+.+.+
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~ 84 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVD 84 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999998754
No 8
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.55 E-value=7.4e-15 Score=123.76 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHHH
Q 006352 180 QLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 251 (649)
Q Consensus 180 qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~al 251 (649)
+.++|++|+.||+++|+++|+||++||+|.+|++||+.+|+|.++|..|.|++..++++||+.||++|+.++
T Consensus 4 d~~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 75 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTVL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999999999999999874
No 9
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=121.99 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHHH
Q 006352 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 251 (649)
Q Consensus 178 ~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~al 251 (649)
+....+|++|+.||+++|+++|+|||+||+|.+|.+||+++|+|.++|..|.|++..++++||+.||++|+.+.
T Consensus 4 ~~~~~l~~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 77 (85)
T 2kv2_A 4 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999874
No 10
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.6e-14 Score=125.52 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHH
Q 006352 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNS 250 (649)
Q Consensus 178 ~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~a 250 (649)
..+.++|++|+.||+++|+++|+|+|+||+|.+|++||+++|+|.++|..|.|++..++++||+.||++|+.+
T Consensus 19 e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~ 91 (101)
T 2rrd_A 19 EMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKY 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999987
No 11
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.44 E-value=7e-13 Score=149.26 Aligned_cols=126 Identities=17% Similarity=0.044 Sum_probs=107.0
Q ss_pred CCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCcc-ccchHHHHHHHhCCC--CCcHHHHH
Q 006352 2 SLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLC-NMFDTGQASRVLKLE--RNSLEYLL 78 (649)
Q Consensus 2 ST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~-nvFDTqIAA~LLg~~--~~sLa~LV 78 (649)
++.+..|+|++.... .+ ..|++||+|+++.||+|++++|+.+| ..+|+.+. .+|||++|+|+|++. .++|..|+
T Consensus 54 a~~~~a~yIp~~~~~-~l-~~Lk~lLed~~i~KV~hn~K~Dl~vL-~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La 130 (592)
T 3pv8_A 54 VNEHGRFFLRPETAL-AD-PQFVAWLGDETKKKSMFDSKRAAVAL-KWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 130 (592)
T ss_dssp EETTEEEEECHHHHT-TC-HHHHHHHTCTTSEEEESSHHHHHHHH-HHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHH
T ss_pred EcCCceEEEccchhh-HH-HHHHHHHhCCCCeEEEechHHHHHHH-HHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHH
Confidence 455567888754211 23 56999999999999999999999999 56899875 599999999999985 59999999
Q ss_pred HHHcCCCCCcccccccCCC---CCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 006352 79 HHFCGVNANKEYQNADWRV---RPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 130 (649)
Q Consensus 79 e~~LGv~LdK~~q~SDW~~---RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~g 130 (649)
.+|||+.+.+..+..+|.. +|.++.+..||+.||.+++.||+.|..+|.+.+
T Consensus 131 ~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~ 185 (592)
T 3pv8_A 131 KMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNE 185 (592)
T ss_dssp GGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999988777777763 566688999999999999999999999999765
No 12
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.43 E-value=2e-13 Score=121.82 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHHH
Q 006352 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 251 (649)
Q Consensus 179 ~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~al 251 (649)
.+.++|++|++||.++|+++|+|||+||+|.+|++||+++|+|.++|.+|.|++..++++| +.||++|+.+.
T Consensus 13 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~ 84 (103)
T 2e1f_A 13 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFC 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999 99999998863
No 13
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.42 E-value=2.4e-13 Score=123.27 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHHHH
Q 006352 179 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSM 251 (649)
Q Consensus 179 ~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~al 251 (649)
.+.++|++|++||.++|+++|+|+|+||+|.+|++||+++|+|.++|.+|.|++..++++| +.||++|+.+.
T Consensus 20 ~d~~l~~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~ 91 (113)
T 2dgz_A 20 TQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFC 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999 99999998864
No 14
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.25 E-value=1.7e-11 Score=137.95 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=95.1
Q ss_pred HHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccc-cchHHHHHHHhCCC--CCcHHHHHHHHcCCCC-------Cccc
Q 006352 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCN-MFDTGQASRVLKLE--RNSLEYLLHHFCGVNA-------NKEY 90 (649)
Q Consensus 21 ~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~n-vFDTqIAA~LLg~~--~~sLa~LVe~~LGv~L-------dK~~ 90 (649)
+.|+++|+|+.+.||+|++++|+.+| ..+|+.+.+ +|||++|+|+|++. .++|..|+.+|||+.. .|+.
T Consensus 80 ~~L~~~L~d~~i~kV~hnak~D~~~L-~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~ 158 (605)
T 2kfn_A 80 ELLKPLLEDEKALKVGQNLKYDRGIL-ANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGK 158 (605)
T ss_dssp HHHHHHHTCTTSCEEESSHHHHHHHH-HTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSST
T ss_pred HHHHHHHcCCCCeEEEECcHHHHHHH-HHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCc
Confidence 56999999999999999999999999 568998876 89999999999985 6999999999999875 3566
Q ss_pred ccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006352 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 128 (649)
Q Consensus 91 q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e 128 (649)
+.++|..+|| +++..||+.||.+++.||..|..+|.+
T Consensus 159 ~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 159 NQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp TCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679998888 779999999999999999999998875
No 15
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.97 E-value=1.4e-10 Score=132.75 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=98.3
Q ss_pred CceEEEeCCCcchhhhHHHHHhhcCCCceEEEEec-hhhHHHHHHHh------CCCcc--ccchHHHHHHHhCCC--CCc
Q 006352 5 TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGA-DRDIVWLQRDF------GIYLC--NMFDTGQASRVLKLE--RNS 73 (649)
Q Consensus 5 ~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~a-k~DL~~L~rd~------GI~p~--nvFDTqIAA~LLg~~--~~s 73 (649)
+..++||+..+...+ +.|+++|+ +.+.||+|++ ++|+.+|.+.+ |+.+. .+|||++|+|+|++. .++
T Consensus 29 ~~~~~~~p~~i~~~l-~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~ 106 (698)
T 1x9m_A 29 AEYVSYRPSDFGAYL-DALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTD 106 (698)
T ss_dssp TEEEEECGGGHHHHH-HHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCT
T ss_pred CcEEEEChHHHHHHH-HHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCC
Confidence 467889988775345 67999999 9999999999 99999997664 88665 599999999999985 589
Q ss_pred HHHHHHHHc-------CCCC-----C-----------cccc--c-ccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006352 74 LEYLLHHFC-------GVNA-----N-----------KEYQ--N-ADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127 (649)
Q Consensus 74 La~LVe~~L-------Gv~L-----d-----------K~~q--~-SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~ 127 (649)
|..|+.+|| |+.+ + |+.+ . .+|.. +++.+..||+.||.+++.||..|..+|.
T Consensus 107 L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 107 MGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp TTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887 4332 1 2222 1 28865 6688999999999999999999999998
Q ss_pred cCC
Q 006352 128 SMP 130 (649)
Q Consensus 128 e~g 130 (649)
+.+
T Consensus 185 ~~~ 187 (698)
T 1x9m_A 185 YFP 187 (698)
T ss_dssp TSC
T ss_pred hcc
Confidence 765
No 16
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.53 E-value=1.9e-07 Score=104.20 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=79.1
Q ss_pred CCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHHH
Q 006352 2 SLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHF 81 (649)
Q Consensus 2 ST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~~ 81 (649)
++.++.|+|| ..+ +.|+++|+| +.||+|++++|+. .+|+.+..+|||++|+|+|++..++|+.|+++|
T Consensus 35 a~~~~a~~i~-----~~l-~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~fDT~laAyLL~p~~~~L~~La~~y 102 (540)
T 4dfk_A 35 ARGGRVHRAP-----EPY-KALRDLKEA--RGLLAKDLSVLAL----REGLGLPPGDDPMLLAYLLDPSNTTPEGVARRY 102 (540)
T ss_dssp EETTEEEECS-----SHH-HHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBCCCHHHHHHHHCTTCCCHHHHHHHH
T ss_pred EcCCEEEEeh-----hhH-HHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcceeHHHHHHHhCCCCCCHHHHHHHH
Confidence 4456677776 134 568999998 8899999999999 578877789999999999998789999999999
Q ss_pred cCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006352 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126 (649)
Q Consensus 82 LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL 126 (649)
+++ +.| +|+.||.+++.||..|..+|
T Consensus 103 l~~-~gk------------------~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 103 GGE-WTE------------------EAGERAALSERLFANLWGRL 128 (540)
T ss_dssp TSC-CCS------------------CHHHHHHHHHHHHHHHHHHT
T ss_pred hhh-hcc------------------chHHHHHHHHHHHHHHHHHH
Confidence 986 221 36789999999999999999
No 17
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=97.43 E-value=0.00021 Score=83.58 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHHHcCCCCCcccccccCCCCCC
Q 006352 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPL 100 (649)
Q Consensus 21 ~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~~LGv~LdK~~q~SDW~~RPL 100 (649)
+.|++||+|+.+ ++++|+++| ..+|+.+..+|||++|+|+|++..++|..|+.+| | | +|.
T Consensus 340 ~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~~~~Dt~laayLl~p~~~~l~~l~~~~-g----k-----~~~---- 399 (832)
T 1bgx_T 340 KALRDLKEARGL-----LAKDLSVLA-LREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRY-G----G-----EWT---- 399 (832)
T ss_dssp HHHHHCSSBCBT-----THHHHHHHH-HHHTCCCCBCCCHHHHHHHHCTTCCSTTHHHHHH-S----C-----CCC----
T ss_pred HHHHHHHhCCCC-----ChHHHHHHH-HHcCCccCcccCHHHHHHHcCCCCCCHHHHHHHh-C----C-----Cch----
Confidence 359999999987 999999999 5699998878999999999998668999999999 3 2 241
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006352 101 PDEMLRYAREDTHYLLYIYDIMKIKLS 127 (649)
Q Consensus 101 S~eQl~YAA~DV~yLl~Lyd~L~~qL~ 127 (649)
+ + || .||.+++.||..|..+|.
T Consensus 400 -~-~--ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 400 -E-E--AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp -S-S--HH-HHHHHHHHHHHHHHHHHT
T ss_pred -H-H--HH-HHHHHHHHHHHHHHHHHh
Confidence 1 1 88 699999999999999997
No 18
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=96.68 E-value=0.0021 Score=63.32 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=70.8
Q ss_pred HHHHHhhcC-------CCceEEEEechhhHHHHHHH---hCCCc-----cccchHHHHHHHhCCCCCcHHHHHHHHcCCC
Q 006352 21 PYLREVFKD-------PTKKKVMHGADRDIVWLQRD---FGIYL-----CNMFDTGQASRVLKLERNSLEYLLHHFCGVN 85 (649)
Q Consensus 21 ~~Lk~lLeD-------p~I~KV~H~ak~DL~~L~rd---~GI~p-----~nvFDTqIAA~LLg~~~~sLa~LVe~~LGv~ 85 (649)
..|..++.+ .....|+|++++|+.+|.+. +|+.. ..++||+.+++.+.+ .++|..|+++| |+.
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~-gi~ 194 (235)
T 3v9w_A 117 HEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG-QTVLSKACQTA-GMD 194 (235)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHH-TCC
T ss_pred HHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC-CCCHHHHHHHc-CCC
Confidence 345566642 46788999999999998654 47742 258999999987754 47999999876 554
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 006352 86 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 130 (649)
Q Consensus 86 LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~g 130 (649)
++. ....+|..||.++..||..|..+|.+.+
T Consensus 195 ~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 195 FDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp CCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 421 1236789999999999999999999876
No 19
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=96.02 E-value=0.013 Score=50.17 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHH--hHHHHHHHHH
Q 006352 182 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIER--YMGPVLSIIK 248 (649)
Q Consensus 182 aVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrr--yGdeIL~iI~ 248 (649)
..++.|.+-|..++.+.+.|...+++|..|..||...|+|.+++..|.|..+..+++ |-..++-.++
T Consensus 7 ~ay~~Lr~~~i~~s~~~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~fk~FK~~l~~L~ 75 (81)
T 1d8b_A 7 MTYERLRELSLNLGNRMVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFKYFKATIADLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999998877775 4555554443
No 20
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=93.62 E-value=0.18 Score=49.05 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=62.1
Q ss_pred CceEEEEechhhHHHHHH---HhCCC--c---cccchHHHHHHHhCCCCCcHHHHHHHHcCCCCCcccccccCCCCCCCH
Q 006352 31 TKKKVMHGADRDIVWLQR---DFGIY--L---CNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPD 102 (649)
Q Consensus 31 ~I~KV~H~ak~DL~~L~r---d~GI~--p---~nvFDTqIAA~LLg~~~~sLa~LVe~~LGv~LdK~~q~SDW~~RPLS~ 102 (649)
....|+|++.+|+.+|.+ .+|+. + ...+||+..++.+- +.++|..|+++ +|+.++..
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~~~~L~~l~~~-~gi~~~~~------------- 190 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-GQTVLAKACQA-AGMEFDNR------------- 190 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-SCCSHHHHHHH-TTCCCCTT-------------
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-CCCCHHHHHHH-cCCCcCCC-------------
Confidence 456789999999998864 35664 2 35899987766543 34789999876 58765321
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 006352 103 EMLRYAREDTHYLLYIYDIMKIKLSSMPK 131 (649)
Q Consensus 103 eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr 131 (649)
....|..||.++..|+..|..++.+.+.
T Consensus 191 -~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 218 (224)
T 2f96_A 191 -EAHSARYDTEKTAELFCGIVNRWKEMGG 218 (224)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1134788999999999999999988763
No 21
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=93.28 E-value=0.16 Score=50.54 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=64.9
Q ss_pred HHHHHhhcC--CCceEEEEec-hhhHHHHHHH---hCCCc--c--ccchHHHHHHHhC----------CCCCcHHHHHHH
Q 006352 21 PYLREVFKD--PTKKKVMHGA-DRDIVWLQRD---FGIYL--C--NMFDTGQASRVLK----------LERNSLEYLLHH 80 (649)
Q Consensus 21 ~~Lk~lLeD--p~I~KV~H~a-k~DL~~L~rd---~GI~p--~--nvFDTqIAA~LLg----------~~~~sLa~LVe~ 80 (649)
+.|..++.+ +...-|.|++ .+|+.+|.+. +|+.. . .++||+..++.+. ...++|..|+++
T Consensus 106 ~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHH
Confidence 456677766 2246789997 9999888654 46653 2 4789998776332 246899999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006352 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127 (649)
Q Consensus 81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~ 127 (649)
++|+..... .-|..||..+..|+..+..++.
T Consensus 186 ~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 186 LYWQAPTDS----------------HTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHHH
T ss_pred HhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHHH
Confidence 999886421 3378899999999877666554
No 22
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.16 E-value=0.27 Score=48.02 Aligned_cols=91 Identities=26% Similarity=0.244 Sum_probs=64.2
Q ss_pred HHHHHhhcCC--CceEEEEec-hhhHHHHHH---HhCCCcc---ccchHHHHHHHhC---------C--CCCcHHHHHHH
Q 006352 21 PYLREVFKDP--TKKKVMHGA-DRDIVWLQR---DFGIYLC---NMFDTGQASRVLK---------L--ERNSLEYLLHH 80 (649)
Q Consensus 21 ~~Lk~lLeDp--~I~KV~H~a-k~DL~~L~r---d~GI~p~---nvFDTqIAA~LLg---------~--~~~sLa~LVe~ 80 (649)
..|..+|..- ...-|.|++ .+|+.+|.+ .+|+... .++||+..++.+. + ..++|..|+++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 4566777752 156789999 999988864 3566542 4799987665442 2 36899999998
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006352 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127 (649)
Q Consensus 81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~ 127 (649)
++|+.... ...|..||.++..|+..|..++.
T Consensus 181 ~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 181 YFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHH
Confidence 88876431 35688999999999988776654
No 23
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=92.36 E-value=0.36 Score=45.88 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=65.2
Q ss_pred HHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHH---hCC---CCCcHHHHHHHHcCCCCCccccccc
Q 006352 21 PYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRV---LKL---ERNSLEYLLHHFCGVNANKEYQNAD 94 (649)
Q Consensus 21 ~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~L---Lg~---~~~sLa~LVe~~LGv~LdK~~q~SD 94 (649)
+.|..++.+ ...|+|++.+|+.+|...+ ....++||+....+ .+. ..++|..|+++++|+.+.....
T Consensus 75 ~~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~--- 147 (189)
T 1wlj_A 75 LEILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL--- 147 (189)
T ss_dssp HHHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTT---
T ss_pred HHHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCC---
Confidence 456777764 4679999999999994322 22358898753221 122 3689999999999988754210
Q ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 006352 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMP 130 (649)
Q Consensus 95 W~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~g 130 (649)
...|..||.++..|+..|..++...+
T Consensus 148 ----------~H~Al~Da~ata~l~~~l~~~~~~~~ 173 (189)
T 1wlj_A 148 ----------GHSSVEDARATMELYQISQRIRARRG 173 (189)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------CcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 13478899999999999998888765
No 24
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=91.84 E-value=0.36 Score=45.71 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=61.9
Q ss_pred HHHHHhhcCCCceEEEEechhhHHHHHHH---hCCCc--cccchHHHHHHHh-CCCCCcHHHHHHHHcCCCCCccccccc
Q 006352 21 PYLREVFKDPTKKKVMHGADRDIVWLQRD---FGIYL--CNMFDTGQASRVL-KLERNSLEYLLHHFCGVNANKEYQNAD 94 (649)
Q Consensus 21 ~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd---~GI~p--~nvFDTqIAA~LL-g~~~~sLa~LVe~~LGv~LdK~~q~SD 94 (649)
..|..++.+ ...|+|++.+|+.+|.+. +|+.+ ..++||+..++.+ +...++|..|++. +|+....
T Consensus 84 ~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~------ 154 (186)
T 2p1j_A 84 PEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR------ 154 (186)
T ss_dssp HHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT------
T ss_pred HHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC------
Confidence 346667764 367899999999988643 56653 3589998766655 3457899999986 5766431
Q ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHH
Q 006352 95 WRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125 (649)
Q Consensus 95 W~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~q 125 (649)
...|..||.++..|+..|..+
T Consensus 155 ----------~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 155 ----------HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHTTC
T ss_pred ----------CcCHHHHHHHHHHHHHHHHHH
Confidence 256889999999998876544
No 25
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=91.00 E-value=0.64 Score=48.70 Aligned_cols=91 Identities=18% Similarity=0.076 Sum_probs=65.0
Q ss_pred HHHHHhhcC--CCceEEEEe-chhhHHHHHHH---hCCCc--c--ccchHHHHHH-HhC---------CCCCcHHHHHHH
Q 006352 21 PYLREVFKD--PTKKKVMHG-ADRDIVWLQRD---FGIYL--C--NMFDTGQASR-VLK---------LERNSLEYLLHH 80 (649)
Q Consensus 21 ~~Lk~lLeD--p~I~KV~H~-ak~DL~~L~rd---~GI~p--~--nvFDTqIAA~-LLg---------~~~~sLa~LVe~ 80 (649)
..|..++.+ +....|.|+ +.+|+.+|.+. +|+.. . .++||....+ +.. ...++|..|+++
T Consensus 106 ~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (314)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHH
Confidence 446667766 225678999 89999998654 46553 2 3789987655 322 136899999999
Q ss_pred HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006352 81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127 (649)
Q Consensus 81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~ 127 (649)
|+|+..... .-|..||..+..|+..+..++.
T Consensus 186 l~gi~~~~a----------------HrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 186 LYWQAPTDS----------------HTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHSSCCSCS----------------SSHHHHHHHHHHHHHSSHHHHH
T ss_pred hcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 999886432 2277899999999888776665
No 26
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=89.70 E-value=1.3 Score=41.76 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=59.6
Q ss_pred HHHHHhhcCCCceEEEEechhhHHHHHHH---hCCC-c-----cccchHHHHHHHhCCC-CCcHHHHHHHHcCCCCCccc
Q 006352 21 PYLREVFKDPTKKKVMHGADRDIVWLQRD---FGIY-L-----CNMFDTGQASRVLKLE-RNSLEYLLHHFCGVNANKEY 90 (649)
Q Consensus 21 ~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd---~GI~-p-----~nvFDTqIAA~LLg~~-~~sLa~LVe~~LGv~LdK~~ 90 (649)
..|..++.+ ...|+|++.+|+.+|.+. +|+. | ..++||+..++.+-+. .++|..|+++ +|+......
T Consensus 87 ~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~-~gi~~~~~~ 163 (194)
T 2gui_A 87 DEFMDYIRG--AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR-YEIDNSKRT 163 (194)
T ss_dssp HHHHHHHTT--SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH-TTCCCTTCS
T ss_pred HHHHHHHCC--CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH-cCcCCCCCC
Confidence 346677765 356899999999988653 4665 2 3689998666655443 5799999876 577653210
Q ss_pred ccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006352 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124 (649)
Q Consensus 91 q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 124 (649)
..-|..||.++..||..|..
T Consensus 164 --------------~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 164 --------------LHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTC
T ss_pred --------------CCChHHHHHHHHHHHHHHHh
Confidence 12377899999999877543
No 27
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=80.64 E-value=6.7 Score=40.02 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=60.7
Q ss_pred HHHHHhhcCC-----CceEEEEechhhHH-HHHHH---hCCCcc----ccchHHHHH-HHhCCCC--CcHHHHHHHHcCC
Q 006352 21 PYLREVFKDP-----TKKKVMHGADRDIV-WLQRD---FGIYLC----NMFDTGQAS-RVLKLER--NSLEYLLHHFCGV 84 (649)
Q Consensus 21 ~~Lk~lLeDp-----~I~KV~H~ak~DL~-~L~rd---~GI~p~----nvFDTqIAA-~LLg~~~--~sLa~LVe~~LGv 84 (649)
..|..++.+. ...-|+|++.+|+. +|.+. +|+... .++||+... .+++... ++|..|+++ +|+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi 236 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGM 236 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTC
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCC
Confidence 3456677653 14679999999998 88653 465532 588997543 3455443 899999876 676
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006352 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126 (649)
Q Consensus 85 ~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL 126 (649)
...... .-|..||.++..|+..|..+.
T Consensus 237 ~~~g~~---------------H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 237 DYDGRP---------------NCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCSCT---------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC---------------CChHHHHHHHHHHHHHHHHhC
Confidence 653111 237789999999988876544
No 28
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=75.58 E-value=10 Score=35.71 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=59.1
Q ss_pred HHHHhhcCCC-----ceEEEEechhhHH-HHHH---HhCCCcc----ccchHHHHHH-HhCCC--CCcHHHHHHHHcCCC
Q 006352 22 YLREVFKDPT-----KKKVMHGADRDIV-WLQR---DFGIYLC----NMFDTGQASR-VLKLE--RNSLEYLLHHFCGVN 85 (649)
Q Consensus 22 ~Lk~lLeDp~-----I~KV~H~ak~DL~-~L~r---d~GI~p~----nvFDTqIAA~-LLg~~--~~sLa~LVe~~LGv~ 85 (649)
.|..++.+.. ..-|+|++.+|+. +|.+ .+|+... .++||+..+. +++.. .++|..|+++ +|+.
T Consensus 91 ~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~gi~ 169 (204)
T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMD 169 (204)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCC
T ss_pred HHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-cCCC
Confidence 4556666432 3468999999996 8854 3566532 5899976554 44432 4789999876 5776
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006352 86 ANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126 (649)
Q Consensus 86 LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL 126 (649)
..... .-|..||.++..|+..|..+.
T Consensus 170 ~~~~~---------------H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 170 YDGRP---------------HCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp CCSCT---------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCc---------------cCcHHHHHHHHHHHHHHHHCC
Confidence 53111 237789999999988766543
No 29
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=75.51 E-value=11 Score=39.81 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHhhcCC-----CceEEEEechhhHH-HHHHH---hCCCc----cccchHHHHH-HHhCCCC--CcHHHHHHHHcCC
Q 006352 21 PYLREVFKDP-----TKKKVMHGADRDIV-WLQRD---FGIYL----CNMFDTGQAS-RVLKLER--NSLEYLLHHFCGV 84 (649)
Q Consensus 21 ~~Lk~lLeDp-----~I~KV~H~ak~DL~-~L~rd---~GI~p----~nvFDTqIAA-~LLg~~~--~sLa~LVe~~LGv 84 (649)
..|..|+.+. ...-|+|++.+|+. +|.+. +|+.. ..++||+... .+++... ++|..|+++ +|+
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi 286 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGM 286 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TTC
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cCC
Confidence 3455677653 14679999999998 88653 46543 2578997544 3445443 899999876 677
Q ss_pred CCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006352 85 NANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126 (649)
Q Consensus 85 ~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL 126 (649)
...... .-|..||.++..|+..|..+.
T Consensus 287 ~~~g~~---------------HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 287 DYDGRP---------------HCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCSCT---------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCC---------------CCHHHHHHHHHHHHHHHHHhc
Confidence 653211 337789999999988866544
No 30
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=75.41 E-value=6.8 Score=42.50 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhC---CCCHHHHHhhhcCChhHHHHhHHHHHHHHH
Q 006352 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQL---PTTAAKLRRLLKSKHSYIERYMGPVLSIIK 248 (649)
Q Consensus 178 ~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~---P~S~~eL~~i~g~~~~~vrryGdeIL~iI~ 248 (649)
+...++++.|..++..+|.+.++|+..|++.+.|..|+-.. +.+..++.+..|...=..+-.|+.++.+|+
T Consensus 360 ~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~l~~~g~~~Wr~~~~~~~~~~~~~ 433 (440)
T 3cym_A 360 PERLQVLNRVRKAVSQIAEDTRTPVEIVIKPQYLRNLCWTDEPRKRDVARFLSEQGARDWQVSLVAESVSRAIE 433 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHSCHHHHHHHHCSSCGGGCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHcCCHHHHHHHhCcCCCChhhHhHHHhhccCCCchHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999432 344666666666655455667888877765
No 31
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=67.84 E-value=14 Score=40.71 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=55.1
Q ss_pred HHHHhhcCCCceEEEEe-chhhHHHHHHH---hCCCc--------cccchHHHHHHHh---------------CCCCCcH
Q 006352 22 YLREVFKDPTKKKVMHG-ADRDIVWLQRD---FGIYL--------CNMFDTGQASRVL---------------KLERNSL 74 (649)
Q Consensus 22 ~Lk~lLeDp~I~KV~H~-ak~DL~~L~rd---~GI~p--------~nvFDTqIAA~LL---------------g~~~~sL 74 (649)
.|..++..+..+.|+|+ +.+|+.+|.+. +|+.+ ...+||.-.++.+ +...++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 45567764566789998 89999887543 34432 3467887555432 2225789
Q ss_pred HHHHHHHcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006352 75 EYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124 (649)
Q Consensus 75 a~LVe~~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 124 (649)
..|++. +|+..... .-|..||.++..|+..|..
T Consensus 167 ~~L~~~-~Gi~~~~a----------------HrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 167 EHLTKA-NGIEHSNA----------------HDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp HHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCC----------------CCHHHHHHHHHHHHHHHHH
Confidence 999765 57664321 2356788888888877654
No 32
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=52.78 E-value=5.7 Score=41.73 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCH--HHHHhhhcCChhH-HHHhHHHHHHHHH
Q 006352 178 AQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTA--AKLRRLLKSKHSY-IERYMGPVLSIIK 248 (649)
Q Consensus 178 ~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~--~eL~~i~g~~~~~-vrryGdeIL~iI~ 248 (649)
+...++++.|..|+..+|.+.++|+..|++.+.|..|+...|.+. .++..+ ..+. .+-.|+.+++++.
T Consensus 301 ~~~~~~~~~l~~~~~~~a~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~---l~~Wr~~~~~~~l~~~l~ 371 (375)
T 1yt3_A 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL---ISGWRGELMAEALHNLLQ 371 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHHTTCSCCSSCCGG---GSHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcCCHHHHHHHHhhcccCCCcchhhhh---hcchHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999997533211 111111 1233 3346777777664
No 33
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=36.44 E-value=27 Score=35.84 Aligned_cols=88 Identities=8% Similarity=-0.025 Sum_probs=52.4
Q ss_pred HHHHhhcCCCc----eEEEEechhhH-HHHHH---HhCCCcc----ccchHHHHHH-HhCC-------CCCcHHHHHHHH
Q 006352 22 YLREVFKDPTK----KKVMHGADRDI-VWLQR---DFGIYLC----NMFDTGQASR-VLKL-------ERNSLEYLLHHF 81 (649)
Q Consensus 22 ~Lk~lLeDp~I----~KV~H~ak~DL-~~L~r---d~GI~p~----nvFDTqIAA~-LLg~-------~~~sLa~LVe~~ 81 (649)
.|..++.+..+ ..+.+....|+ .+|.+ .+|+... ..+||+..++ +++. +.++|..+++ +
T Consensus 101 ~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~-~ 179 (308)
T 3cg7_A 101 QFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE-Y 179 (308)
T ss_dssp HHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH-H
T ss_pred HHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH-H
Confidence 35556664322 12233338998 56653 4566543 4689985443 3321 1478999984 5
Q ss_pred cCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHH
Q 006352 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIK 125 (649)
Q Consensus 82 LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~q 125 (649)
+|+...... .-|..||.++..|+..|..+
T Consensus 180 ~gi~~~~~~---------------HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 180 YDLPTIGRA---------------HDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp TTCCCCSCT---------------TCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCC---------------cCHHHHHHHHHHHHHHHHHc
Confidence 677653211 23778999999998877653
No 34
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=36.05 E-value=74 Score=30.60 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=51.7
Q ss_pred HHHHHhhcCCCceEEEEec--------hhhHHH-HHH---HhCCCcc----ccchHHH---HHHHhCCCCCcHHHHHHHH
Q 006352 21 PYLREVFKDPTKKKVMHGA--------DRDIVW-LQR---DFGIYLC----NMFDTGQ---ASRVLKLERNSLEYLLHHF 81 (649)
Q Consensus 21 ~~Lk~lLeDp~I~KV~H~a--------k~DL~~-L~r---d~GI~p~----nvFDTqI---AA~LLg~~~~sLa~LVe~~ 81 (649)
+.|..++.+.- .|.|++ .+|+.. |.+ .+|+... ..+|++- .++-+ ...++|..|++ +
T Consensus 109 ~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~-~p~~~L~~l~~-~ 184 (224)
T 2xri_A 109 ERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC-WPKNGLLDMNK-G 184 (224)
T ss_dssp HHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS-CCTTTHHHHHH-H
T ss_pred HHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc-CCCCCHHHHHH-H
Confidence 34556676532 256776 899984 632 4566542 5778542 22222 23489999987 5
Q ss_pred cCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q 006352 82 CGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKI 124 (649)
Q Consensus 82 LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~ 124 (649)
+|+..... ..-|..||.++..|+..|..
T Consensus 185 ~gi~~~~~---------------~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 185 LSLQHIGR---------------PHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp TTCCCCSC---------------TTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCC---------------CcChHHHHHHHHHHHHHHHH
Confidence 67654211 13377899999999877653
No 35
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=35.54 E-value=22 Score=31.55 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=35.4
Q ss_pred cChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhHHHHHHHHHH
Q 006352 206 LPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKN 249 (649)
Q Consensus 206 LsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryGdeIL~iI~~ 249 (649)
|+...++.||--+|.|.++++.+...-. + ....++||++|..
T Consensus 64 l~e~~a~~I~nl~P~t~dElraii~~~~-~-~eel~~ILd~l~k 105 (107)
T 1go3_F 64 IDEKTAVKIADILPEDLDDLRAIYYKRE-L-PENAEEILEIVRK 105 (107)
T ss_dssp CCHHHHHHHHHHCCCSHHHHHHHSTTSC-C-CTTHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHhccc-C-cHHHHHHHHHHHH
Confidence 8889999999999999999999975543 3 7788888888864
No 36
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=33.93 E-value=41 Score=40.79 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=67.7
Q ss_pred ceEEEEechhhHHHHHHHhCCCcc--ccchHHHHHH-Hh------------------------------------CC---
Q 006352 32 KKKVMHGADRDIVWLQRDFGIYLC--NMFDTGQASR-VL------------------------------------KL--- 69 (649)
Q Consensus 32 I~KV~H~ak~DL~~L~rd~GI~p~--nvFDTqIAA~-LL------------------------------------g~--- 69 (649)
.+.|+|+..+|...+...|.+... ..+|||-... +- ++
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 456899999999877688888765 3778874211 00 01
Q ss_pred --C------CC--cHHHHHHHHcCC-CCCcccccccCCCCCCC------HHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 006352 70 --E------RN--SLEYLLHHFCGV-NANKEYQNADWRVRPLP------DEMLRYAREDTHYLLYIYDIMKIKLSSM 129 (649)
Q Consensus 70 --~------~~--sLa~LVe~~LGv-~LdK~~q~SDW~~RPLS------~eQl~YAA~DV~yLl~Lyd~L~~qL~e~ 129 (649)
. -. ||.++...|||+ .++|.. +..|..-.+. .+.+.|+|.||.....+|..|.....+.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~-Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~er 350 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEP-RELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLER 350 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCS-SSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhh-HhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 0 14 789999999997 888764 3344433333 5678999999999999999999877654
No 37
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=26.96 E-value=90 Score=28.50 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=38.5
Q ss_pred ccccChHHHHHHHHhCCCCHHHHHhhhcCChhH-HHHhHHHHHHHHHHH
Q 006352 203 GYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY-IERYMGPVLSIIKNS 250 (649)
Q Consensus 203 ~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~-vrryGdeIL~iI~~a 250 (649)
.|-|....++.|+..+|++..+|..|....... -....++||++|++.
T Consensus 86 ~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~IL~~i~~~ 134 (136)
T 3ayh_A 86 EFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKINTT 134 (136)
T ss_dssp TTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Confidence 378999999999999999999999886543333 345788899999875
No 38
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=26.80 E-value=1.2e+02 Score=31.23 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=57.3
Q ss_pred cCCCceEEEEechhhHHHHHHHh-CCC-c--------------cccchHHHHHHHhCCCCCcHHHHHHHHcCCC-CCccc
Q 006352 28 KDPTKKKVMHGADRDIVWLQRDF-GIY-L--------------CNMFDTGQASRVLKLERNSLEYLLHHFCGVN-ANKEY 90 (649)
Q Consensus 28 eDp~I~KV~H~ak~DL~~L~rd~-GI~-p--------------~nvFDTqIAA~LLg~~~~sLa~LVe~~LGv~-LdK~~ 90 (649)
-++.+.+|.|....|+.-|.+.+ |-. | ..++||...+..+..-.-||+.|++. |++. +.+.
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~-L~v~r~g~~- 224 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQ-LELERIGPQ- 224 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHH-TTCCCCSCT-
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHh-CCCCCCCCC-
Confidence 46789999888889986554432 221 1 35888887777665445689998876 4543 2111
Q ss_pred ccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006352 91 QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 128 (649)
Q Consensus 91 q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e 128 (649)
.=|..|+.....+|-+|++.+-+
T Consensus 225 ---------------HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 225 ---------------HQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp ---------------TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------CcchhHHHHHHHHHHHHHHHHhc
Confidence 22778999999999999887764
No 39
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=25.80 E-value=87 Score=29.26 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=38.1
Q ss_pred cccChHHHHHHHHhCCCCHHHHHhhhcCCh-hHHHHhHHHHHHHHHHHH
Q 006352 204 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKH-SYIERYMGPVLSIIKNSM 251 (649)
Q Consensus 204 ~VLsD~~LleIA~~~P~S~~eL~~i~g~~~-~~vrryGdeIL~iI~~al 251 (649)
+-|+...++.|+.-+|.|.+++..|..... ++-....++||++|..+.
T Consensus 100 ~~L~~~E~a~L~NL~P~t~dEar~lipsl~~r~sdEeLe~ILd~l~k~r 148 (152)
T 2c35_A 100 KKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKR 148 (152)
T ss_dssp SSCCHHHHHHHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHhccCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 349999999999999999999998865443 223567888999988754
No 40
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=22.24 E-value=98 Score=34.07 Aligned_cols=102 Identities=17% Similarity=0.066 Sum_probs=62.0
Q ss_pred HHHhhcCCCceEEEEechhhHHHHHHHhCC-Cc--------------cccchHHHHHHHhC----CCCCcHHHHHHHHcC
Q 006352 23 LREVFKDPTKKKVMHGADRDIVWLQRDFGI-YL--------------CNMFDTGQASRVLK----LERNSLEYLLHHFCG 83 (649)
Q Consensus 23 Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI-~p--------------~nvFDTqIAA~LLg----~~~~sLa~LVe~~LG 83 (649)
+.+.|...+++.|+|++-.|+..|++.|-- .| ..++||-..+.... ...-+|..|.+.+-.
T Consensus 268 v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~ 347 (507)
T 3d45_A 268 VIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKE 347 (507)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTS
T ss_pred HHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhc
Confidence 344555567889999999999777665532 22 34889987655321 124689998887642
Q ss_pred CC--CCccc---ccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 006352 84 VN--ANKEY---QNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLS 127 (649)
Q Consensus 84 v~--LdK~~---q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~ 127 (649)
.. +.... ....|. .......=|+-|++..-.++-.|...|.
T Consensus 348 ~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 348 TPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp TTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 21 11110 111111 1112234488899999999999988875
No 41
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=21.39 E-value=78 Score=33.31 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=43.1
Q ss_pred cchHHHHHHHh--C-CCCCcHHHHHHHHcCCCC-Cccccccc-CCCCCCCHHHHHHHHHhHHHHHHHHHH
Q 006352 57 MFDTGQASRVL--K-LERNSLEYLLHHFCGVNA-NKEYQNAD-WRVRPLPDEMLRYAREDTHYLLYIYDI 121 (649)
Q Consensus 57 vFDTqIAA~LL--g-~~~~sLa~LVe~~LGv~L-dK~~q~SD-W~~RPLS~eQl~YAA~DV~yLl~Lyd~ 121 (649)
++|+...++.+ . ...++|..+++++||..- +-...... |. .. ....+.|+..||...+.|+..
T Consensus 267 ~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~-~~-~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 267 ILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRE-TN-HQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp ECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHH-HH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHH-hC-HHHHHHHHHHHHHHHHHHHHH
Confidence 78998877764 3 447999999999999642 21112222 32 11 145789999999999998876
No 42
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=21.10 E-value=1.5e+02 Score=34.32 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=65.8
Q ss_pred HHHHHhh--cCCCceEEEEec-hhhHHHHHHH---hCCCc------------------------cccchHHHHHH-HhCC
Q 006352 21 PYLREVF--KDPTKKKVMHGA-DRDIVWLQRD---FGIYL------------------------CNMFDTGQASR-VLKL 69 (649)
Q Consensus 21 ~~Lk~lL--eDp~I~KV~H~a-k~DL~~L~rd---~GI~p------------------------~nvFDTqIAA~-LLg~ 69 (649)
..|..++ .||+| -|+|+. .+|+..|..+ +|+.. ..++|+...+. .+..
T Consensus 192 ~~f~~~i~~~dPDi-ivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l 270 (775)
T 1qht_A 192 KRFLRVVREKDPDV-LITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINL 270 (775)
T ss_dssp HHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCE-EEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCc
Confidence 3455555 36775 478876 6799776543 44432 13679976554 4455
Q ss_pred CCCcHHHHHHHHcCCCCCc--cccc-ccCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 006352 70 ERNSLEYLLHHFCGVNANK--EYQN-ADWRVRPLPDEMLRYAREDTHYLLYIYDIMK 123 (649)
Q Consensus 70 ~~~sLa~LVe~~LGv~LdK--~~q~-SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~ 123 (649)
..++|..+++++||..... .... .-|...+--...+.|...||..++.|+..+.
T Consensus 271 ~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 271 PTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp SCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6799999999999975321 0111 1244433116689999999999999887654
No 43
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=20.57 E-value=1.2e+02 Score=32.56 Aligned_cols=106 Identities=16% Similarity=0.057 Sum_probs=60.6
Q ss_pred HHHhhcCCCceEEEEechhhHHHHHHHh-CCCc--------------cccchHHHHHHHhCC----CCCcHHHHHHHHcC
Q 006352 23 LREVFKDPTKKKVMHGADRDIVWLQRDF-GIYL--------------CNMFDTGQASRVLKL----ERNSLEYLLHHFCG 83 (649)
Q Consensus 23 Lk~lLeDp~I~KV~H~ak~DL~~L~rd~-GI~p--------------~nvFDTqIAA~LLg~----~~~sLa~LVe~~LG 83 (649)
+.+.|...+.+-|+|++-.|+..+++.| |-.| ..++||.+.+..... ...+|..|.+.+..
T Consensus 273 V~~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~ 352 (430)
T 2a1r_A 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKE 352 (430)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTS
T ss_pred HHHHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHh
Confidence 4444555566779999999998665544 3332 358999876644322 13689988776543
Q ss_pred CCC--CcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 006352 84 VNA--NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS 128 (649)
Q Consensus 84 v~L--dK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e 128 (649)
... .....-.....-....++..-|+-|++..-.++-.|...|..
T Consensus 353 ~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 353 TPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp TTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 211 111100000000001223345788999998898888887754
No 44
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=20.22 E-value=1.3e+02 Score=29.41 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=38.4
Q ss_pred cccChHHHHHHHHhCCCCHHHHHhhhcCCh-hHHHHhHHHHHHHHHHHH
Q 006352 204 YVLPNRTLIEIAKQLPTTAAKLRRLLKSKH-SYIERYMGPVLSIIKNSM 251 (649)
Q Consensus 204 ~VLsD~~LleIA~~~P~S~~eL~~i~g~~~-~~vrryGdeIL~iI~~al 251 (649)
+-|+...++.||--+|.|.++++.|..... ..-..-.++||++|..+.
T Consensus 136 ~kL~efE~aqLaNL~PeTadEaraLIpSle~rlsdEeLeeILd~L~k~r 184 (187)
T 1y14_A 136 TGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLE 184 (187)
T ss_dssp TTCCHHHHHHHHHSCCSSHHHHHHHSGGGTTTSCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHcCcCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHhh
Confidence 559999999999999999999998865433 233567888999888754
No 45
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=20.09 E-value=2.1e+02 Score=25.95 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=46.3
Q ss_pred HHHHHhhcCC----CceEEEEechhhHHHHHHHhC---CCc-cccch--HHH-HHHHhCCCCCcHHHHHHHHcCCCCCcc
Q 006352 21 PYLREVFKDP----TKKKVMHGADRDIVWLQRDFG---IYL-CNMFD--TGQ-ASRVLKLERNSLEYLLHHFCGVNANKE 89 (649)
Q Consensus 21 ~~Lk~lLeDp----~I~KV~H~ak~DL~~L~rd~G---I~p-~nvFD--TqI-AA~LLg~~~~sLa~LVe~~LGv~LdK~ 89 (649)
..|..++.+- ....|+|++.+|+.+|.+.+. ..+ ...+| |.. .++.+.+. +. .|+..
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~---~~------~~i~~--- 153 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE---IL------DGFTK--- 153 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG---GG------GGSCC---
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH---hh------hCCCC---
Confidence 3466677651 346799999999999965431 111 23566 542 23332221 00 01111
Q ss_pred cccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006352 90 YQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL 126 (649)
Q Consensus 90 ~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL 126 (649)
....-|..||.++..|+..+.+.+
T Consensus 154 -------------~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 154 -------------QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp -------------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 012347889999999998887765
Done!