BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006353
(649 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAS2|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1
Length = 698
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 16/187 (8%)
Query: 433 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 488
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVK 556
Query: 489 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 544
D K+E +N+L R+ +RLYAA+IQ P + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSD 616
Query: 545 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 604
TA L FL++ G AL K+Y+ QF K+L I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 605 DKKFLEE 611
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2
Length = 698
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 16/187 (8%)
Query: 433 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 488
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVK 556
Query: 489 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 544
D K+E +N+L R+ +RLYAA+IQ P + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSD 616
Query: 545 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 604
TA L FL++ G AL K+Y+ QF K+L I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 605 DKKFLEE 611
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q8R322|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2
Length = 699
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 16/187 (8%)
Query: 433 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 488
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+
Sbjct: 500 AFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFYPAFKEGM--ALEDYQRMLGYQVT 557
Query: 489 DGKIESLENYLSRLKSYMRLYAALIQTEIP--GVQNAH--GLKEGWAWLARFLNALPANI 544
D K+E +N+L R+ +RLYAA+IQ + P Q AH GL GW WLA+ LN P +
Sbjct: 558 DSKVEQQDNFLKRMSGMIRLYAAIIQLQWPYGNRQEAHPHGLNHGWRWLAQVLNMEPLSD 617
Query: 545 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 604
TA L FL++ G AL K+Y+ QF K++ I +++ ++A S ++ +I
Sbjct: 618 VTATLLFDFLEVCGNALMKQYQVQFWKMILLIKEDYFPRIEAITSS------GQMGSFIR 671
Query: 605 DKKFLEE 611
K+FLE+
Sbjct: 672 LKQFLEK 678
>sp|Q4KLN4|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1
Length = 698
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 16/187 (8%)
Query: 433 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 488
+ I +VAS + P+V D++L H+ C Y+VP + F E E Y + +GY+
Sbjct: 499 AFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFYPAFKEGM--PLEDYQRMLGYQVT 556
Query: 489 DGKIESLENYLSRLKSYMRLYAALIQTEIP-GVQ---NAHGLKEGWAWLARFLNALPANI 544
D K+E +N+L R+ +RLYAA+IQ + P G + + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLQWPYGSRQEAHPHGLNHGWRWLAQILNMEPLSD 616
Query: 545 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 604
TA L FL++ G AL K+Y+ QF K++ I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMILLIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 605 DKKFLEE 611
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q3ZBK7|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1
Length = 698
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 16/187 (8%)
Query: 433 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 488
+ I +VAS + P+V ++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGALILAHLHKKCPYSVPFYPAFKEGM--ALEDYQRMLGYQVK 556
Query: 489 DGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLARFLNALPANI 544
D K+E +N+L R+ +RLYAA+IQ P + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQETHPHGLNHGWRWLAQILNMEPLSD 616
Query: 545 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 604
TA L FL++ G AL K+Y+ QF K++ I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMILLIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 605 DKKFLEE 611
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q6DRB1|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2
Length = 695
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 405 PQSISLATF--SKKVVSRCE---TPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACI 459
PQ + A++ ++K V + E + + A G V + P++ D++L H+ C
Sbjct: 490 PQGLEFASYRLAEKFVKQGEEEVASNHSAAFPIGAVASGIWELHPKIGDLILAHLHKKCP 549
Query: 460 YTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIP- 518
Y VP + S E Y K +GYR ++GK+E +++L R+ +RLYAA+IQ P
Sbjct: 550 YAVPHYPPMESGT--SVEDYQKILGYRVDEGKVEGQDSFLKRMSGMIRLYAAIIQMRWPY 607
Query: 519 ----GVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILD 574
G+ + HG+ GW W+A+ LN P TA L FL++ G AL K+Y+ QF K++
Sbjct: 608 SSKQGL-HLHGMNHGWRWMAQILNMEPLADITATILFDFLEVCGNALMKQYRVQFWKLIL 666
Query: 575 NIYDNFL 581
I + +
Sbjct: 667 IINEEYF 673
>sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1
Length = 677
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 396 VKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLG 452
+ I ++PL + + +KK VS+ ET + A VI+ +P + L
Sbjct: 448 ITINDHPLA-RDYCMLLMAKKFVSQTETAICSNPQAAFPFASVIITFWKLLPDFGKVFLA 506
Query: 453 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED-GKIESLENYLSRLKSYMRLYAA 511
++ + VP V + ++ E Y KTIGYR D ++E + YL R RLYAA
Sbjct: 507 YMYKESPFLVP--YVIPQQQGQTPEQYLKTIGYRLTDKNELEKPDIYLKRQTGLARLYAA 564
Query: 512 LIQTE---IPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQ 568
+I ++ G L EGW WLA ++ P +A + LQ GF L++ Y Q
Sbjct: 565 VIISQGRKAAGPDECFELNEGWLWLAHMVHVKPLPDISATLIMEILQTLGFELWRTYGKQ 624
Query: 569 FRKILDNIYDNFLNALKARED----SKLNLVIAEI 599
F K+L I + ++ L A ++ ++L +++A+
Sbjct: 625 FVKLLVYIQNIYMPQLAAYDEGGPKTRLEMLLAKF 659
>sp|Q5B5B0|PAN1_EMENI Actin cytoskeleton-regulatory complex protein pan1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) GN=pan1 PE=3 SV=1
Length = 1484
Score = 40.0 bits (92), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 223 ERKIRSDAAYEEAKRKE---RALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKE 279
E K R D E + +E RAL EE++RQ K+K + E K R EEAK+AA E E R A++
Sbjct: 1081 EAKQREDEFAREQQEQEARLRAL-EEQVRQGKIKKQ-EEKRRREEAKKAAQEQEARLARQ 1138
Query: 280 AAEREAAENSKR 291
AE EAA+ +R
Sbjct: 1139 RAELEAAKERER 1150
>sp|Q12315|GLE1_YEAST Nucleoporin GLE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE1 PE=1 SV=1
Length = 538
Score = 39.3 bits (90), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 410 LATFSKKVVSRCET-----PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPK 464
L +K VV + ET P+ A+ G + + + Q P++ ++ + + C + +
Sbjct: 328 LNFIAKAVVHQAETEVRVKPES--ALPLGKLTLYLLVQFPELQELFMARLVKKCPFVI-- 383
Query: 465 HIVFSEAAFESE---EAYYKTIGY-REEDGKIESLENYLSRLKSYMRLYAALIQTEIPG- 519
F E E + +G+ R + K E +Y R+ + L+A + + ++P
Sbjct: 384 -------GFTCEIDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQE 436
Query: 520 --VQNAHGLKEGWAW--LARFLNALPANIYTA---VALNAFLQLAGFALFKKYKSQFRKI 572
+H +W LAR N P N+ T V L ++ A + Y +Q K+
Sbjct: 437 FITTTSHPFPIALSWHILARICNT-PLNLITNTHFVILGSWWDAAAVQFLQAYGNQASKL 495
Query: 573 L 573
L
Sbjct: 496 L 496
>sp|A7TL57|ATG11_VANPO Autophagy-related protein 11 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG11 PE=3 SV=1
Length = 1219
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 199 KIAEALDNHLTAVQRDHELKSQIEERKIRSD----AAYEEAKRKERALQEEKIRQE---- 250
KI +D++ T + + +LK IE +++ S A KR+E + E+ ++Q
Sbjct: 719 KIDGLVDSNKTLLNQISDLK--IESKELESSNRDLLAQLNQKREEHKVLEDSLKQRENEG 776
Query: 251 -KVKAEAEAKLR----AEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQ 305
+ K E EAKL+ EA R ALE E +AAKE +E+ E +A S D + +
Sbjct: 777 LRYKDEYEAKLKELTEKFEADRRALEDEIKAAKEQNMKESMEQQTEQSANQSIDQSIEQS 836
Query: 306 PDDSSVIAGAQSRGSRSDGTKKLQSAVRATESAL--NIEQKRLQKLKELDE--ENQSLKL 361
+ S+ + QS + + + QS ++ E ++ ++EQ Q + + D +NQS++
Sbjct: 837 TEQSTEQSTEQSMEQSMEQSME-QSVEQSMEHSMEHSMEQSEKQNMGQNDATIDNQSIET 895
Query: 362 SSNEDF 367
++ED
Sbjct: 896 PTSEDM 901
>sp|Q3IJ53|IF2_PSEHT Translation initiation factor IF-2 OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=infB PE=3 SV=1
Length = 886
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 220 QIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKE 279
Q+E RK R+ K+ A+++E QE+++ AE KLR EE ++AA EA + AK+
Sbjct: 87 QVEVRKTRTYV-------KKSAMEQE---QEELRLAAEEKLRLEEQQKAAQEAAELKAKQ 136
Query: 280 AAEREAAENSKR 291
AER+A E++ R
Sbjct: 137 EAERKAKEDADR 148
>sp|B5FA79|IF2_VIBFM Translation initiation factor IF-2 OS=Vibrio fischeri (strain MJ11)
GN=infB PE=3 SV=1
Length = 893
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 13/72 (18%)
Query: 220 QIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKE 279
Q+E RK R+ Y +A AL+EEK + E++KAEAE E+AKR A EA R ++
Sbjct: 88 QVEVRKKRT---YVKAS----ALEEEK-KAEQLKAEAE-----EQAKRDAEEAAVRELEQ 134
Query: 280 AAEREAAENSKR 291
A+REA E +KR
Sbjct: 135 KAQREAEEQAKR 146
>sp|Q5E7L5|IF2_VIBF1 Translation initiation factor IF-2 OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=infB PE=3 SV=1
Length = 893
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 13/72 (18%)
Query: 220 QIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKE 279
Q+E RK R+ Y +A AL+EEK + E++KAEAE E+AKR A EA R ++
Sbjct: 88 QVEVRKKRT---YVKAS----ALEEEK-KAEQLKAEAE-----EQAKRDAEEAAVRELEQ 134
Query: 280 AAEREAAENSKR 291
A+REA E +KR
Sbjct: 135 KAQREAEEQAKR 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,890,659
Number of Sequences: 539616
Number of extensions: 8765375
Number of successful extensions: 59388
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 2673
Number of HSP's that attempted gapping in prelim test: 41858
Number of HSP's gapped (non-prelim): 9823
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)