Query 006353
Match_columns 649
No_of_seqs 165 out of 210
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 22:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2412 Nuclear-export-signal 100.0 2.4E-96 5E-101 791.2 36.5 563 1-613 1-588 (591)
2 PF07817 GLE1: GLE1-like prote 100.0 1.5E-60 3.2E-65 485.2 17.4 230 348-579 4-256 (256)
3 KOG2412 Nuclear-export-signal 97.8 7.3E-05 1.6E-09 83.7 10.1 135 228-384 229-363 (591)
4 PTZ00121 MAEBL; Provisional 97.4 0.0036 7.9E-08 76.6 16.2 9 183-191 1132-1140(2084)
5 KOG1029 Endocytic adaptor prot 97.0 0.014 3E-07 68.2 15.1 9 99-107 198-206 (1118)
6 PTZ00266 NIMA-related protein 96.8 0.013 2.8E-07 71.3 13.8 10 25-34 227-236 (1021)
7 KOG1029 Endocytic adaptor prot 96.7 0.093 2E-06 61.7 18.7 69 148-226 324-392 (1118)
8 COG3064 TolA Membrane protein 96.7 0.25 5.4E-06 53.3 20.1 16 187-203 122-137 (387)
9 PRK09510 tolA cell envelope in 96.4 0.34 7.4E-06 53.7 19.7 19 164-182 92-110 (387)
10 KOG0163 Myosin class VI heavy 96.3 0.29 6.4E-06 57.7 19.0 13 480-492 1168-1180(1259)
11 PRK09510 tolA cell envelope in 96.2 0.57 1.2E-05 52.0 20.6 14 125-138 47-60 (387)
12 PTZ00266 NIMA-related protein 96.2 0.036 7.7E-07 67.6 12.3 33 612-644 952-984 (1021)
13 PF02854 MIF4G: MIF4G domain; 96.0 0.13 2.9E-06 48.8 13.0 174 372-581 2-184 (209)
14 COG3064 TolA Membrane protein 95.9 1.3 2.8E-05 48.0 20.6 23 241-263 196-218 (387)
15 KOG0163 Myosin class VI heavy 95.5 0.49 1.1E-05 56.0 16.9 11 531-541 1179-1189(1259)
16 PF05262 Borrelia_P83: Borreli 93.8 1.2 2.6E-05 50.8 14.5 53 66-136 47-101 (489)
17 smart00543 MIF4G Middle domain 93.3 2.4 5.2E-05 40.5 13.7 168 372-581 2-175 (200)
18 KOG1144 Translation initiation 93.2 0.38 8.2E-06 57.0 9.3 70 432-513 566-646 (1064)
19 KOG2140 Uncharacterized conser 92.5 0.62 1.3E-05 53.4 9.5 167 349-567 141-312 (739)
20 KOG0742 AAA+-type ATPase [Post 91.9 8.6 0.00019 43.7 17.2 62 137-198 84-146 (630)
21 KOG2002 TPR-containing nuclear 88.0 7.9 0.00017 47.4 13.8 14 148-161 773-786 (1018)
22 PF09726 Macoilin: Transmembra 87.2 24 0.00051 42.4 17.2 42 359-400 616-657 (697)
23 PF12037 DUF3523: Domain of un 86.9 49 0.0011 35.6 19.8 23 126-148 27-51 (276)
24 PF05262 Borrelia_P83: Borreli 86.8 21 0.00046 41.1 15.8 7 71-77 156-162 (489)
25 PRK06568 F0F1 ATP synthase sub 86.4 36 0.00077 33.6 15.7 22 182-204 48-69 (154)
26 KOG4364 Chromatin assembly fac 85.7 18 0.00039 43.0 14.6 10 610-619 769-778 (811)
27 COG4942 Membrane-bound metallo 85.5 72 0.0016 36.3 19.6 21 25-45 38-58 (420)
28 KOG3054 Uncharacterized conser 85.4 5.7 0.00012 41.9 9.6 12 410-421 262-273 (299)
29 KOG4364 Chromatin assembly fac 85.0 18 0.00038 43.0 14.2 9 22-30 50-58 (811)
30 KOG4661 Hsp27-ERE-TATA-binding 83.7 14 0.0003 43.2 12.5 10 212-221 632-641 (940)
31 KOG3054 Uncharacterized conser 83.1 7.8 0.00017 41.0 9.5 7 232-238 137-143 (299)
32 KOG1144 Translation initiation 81.2 9.7 0.00021 45.9 10.3 53 206-263 214-266 (1064)
33 PTZ00491 major vault protein; 79.2 24 0.00053 43.0 13.0 25 214-238 676-700 (850)
34 PF05672 MAP7: MAP7 (E-MAP-115 78.7 78 0.0017 31.9 15.2 15 243-257 102-116 (171)
35 PRK14475 F0F1 ATP synthase sub 77.9 72 0.0016 31.1 14.6 31 183-214 55-85 (167)
36 COG5269 ZUO1 Ribosome-associat 77.7 21 0.00047 38.4 10.7 13 410-422 357-369 (379)
37 PRK12704 phosphodiesterase; Pr 76.9 1.5E+02 0.0033 34.5 18.1 7 288-294 197-203 (520)
38 TIGR03319 YmdA_YtgF conserved 76.6 1.5E+02 0.0032 34.5 18.0 11 440-450 307-317 (514)
39 PRK14471 F0F1 ATP synthase sub 75.4 81 0.0018 30.5 14.7 27 183-210 53-79 (164)
40 KOG2002 TPR-containing nuclear 73.4 87 0.0019 39.0 15.4 23 188-210 775-797 (1018)
41 PF04747 DUF612: Protein of un 72.7 27 0.00058 39.1 10.2 40 213-252 84-124 (510)
42 PRK13428 F0F1 ATP synthase sub 72.2 1.2E+02 0.0026 34.4 15.6 23 184-207 47-69 (445)
43 PRK12472 hypothetical protein; 71.8 88 0.0019 36.2 14.2 13 251-263 280-292 (508)
44 PF12037 DUF3523: Domain of un 71.3 1.6E+02 0.0034 31.9 19.5 25 137-161 52-76 (276)
45 PRK06231 F0F1 ATP synthase sub 69.4 1.4E+02 0.003 30.5 14.7 22 183-205 93-114 (205)
46 PF07046 CRA_rpt: Cytoplasmic 62.4 26 0.00055 27.6 5.4 8 259-266 18-25 (42)
47 PLN03086 PRLI-interacting fact 58.9 45 0.00097 39.2 9.1 10 332-341 94-103 (567)
48 PRK14474 F0F1 ATP synthase sub 57.4 2.5E+02 0.0055 29.5 14.7 12 192-203 58-69 (250)
49 KOG3540 Beta amyloid precursor 55.9 29 0.00064 39.9 6.8 21 107-127 219-239 (615)
50 KOG0612 Rho-associated, coiled 55.6 3.1E+02 0.0067 35.3 15.6 15 68-82 353-367 (1317)
51 KOG2891 Surface glycoprotein [ 55.2 3.2E+02 0.0069 30.0 15.8 7 128-134 230-236 (445)
52 PRK00106 hypothetical protein; 53.5 4.4E+02 0.0095 31.1 18.1 6 370-375 276-281 (535)
53 KOG2891 Surface glycoprotein [ 53.2 3.4E+02 0.0074 29.7 14.4 22 215-236 334-355 (445)
54 PF12128 DUF3584: Protein of u 52.7 6.1E+02 0.013 32.5 34.3 14 30-43 523-536 (1201)
55 COG2268 Uncharacterized protei 52.5 4.6E+02 0.01 31.0 17.0 10 136-145 269-278 (548)
56 PRK14472 F0F1 ATP synthase sub 51.5 2.5E+02 0.0053 27.6 14.8 14 191-204 70-83 (175)
57 PF06637 PV-1: PV-1 protein (P 51.2 1.8E+02 0.0039 32.9 11.7 12 335-346 414-425 (442)
58 KOG2072 Translation initiation 51.0 5.9E+02 0.013 31.8 19.5 47 147-193 676-723 (988)
59 CHL00019 atpF ATP synthase CF0 50.4 2.6E+02 0.0057 27.6 14.8 14 191-204 76-89 (184)
60 PF15236 CCDC66: Coiled-coil d 50.0 2.8E+02 0.006 27.7 13.8 25 190-214 53-77 (157)
61 TIGR03321 alt_F1F0_F0_B altern 49.9 3.2E+02 0.0069 28.4 15.3 14 191-204 57-70 (246)
62 CHL00118 atpG ATP synthase CF0 49.2 2.5E+02 0.0055 27.1 14.5 19 185-204 69-87 (156)
63 KOG2404 Fumarate reductase, fl 48.8 1.4E+02 0.0029 33.7 10.2 100 519-625 258-394 (477)
64 PF07946 DUF1682: Protein of u 48.7 53 0.0011 35.5 7.2 28 175-202 285-312 (321)
65 PRK13460 F0F1 ATP synthase sub 47.4 2.9E+02 0.0062 27.1 14.7 14 191-204 68-81 (173)
66 KOG2072 Translation initiation 47.0 6.7E+02 0.015 31.3 19.8 7 245-251 820-826 (988)
67 KOG4715 SWI/SNF-related matrix 46.2 1.9E+02 0.004 32.1 10.6 36 244-279 281-316 (410)
68 KOG4661 Hsp27-ERE-TATA-binding 45.0 2.5E+02 0.0053 33.5 11.9 7 220-226 628-634 (940)
69 cd03404 Band_7_HflK Band_7_Hfl 44.0 1.5E+02 0.0032 30.6 9.4 6 26-31 28-33 (266)
70 PRK13454 F0F1 ATP synthase sub 43.8 3.4E+02 0.0074 27.0 13.2 21 183-204 76-96 (181)
71 PRK07352 F0F1 ATP synthase sub 41.2 3.5E+02 0.0077 26.4 14.7 21 183-204 64-84 (174)
72 PF06936 Selenoprotein_S: Sele 41.1 1.8E+02 0.0038 29.8 9.1 7 232-238 85-91 (190)
73 PF07349 DUF1478: Protein of u 40.4 25 0.00055 34.6 2.9 39 520-558 35-74 (162)
74 KOG1363 Predicted regulator of 40.2 1.1E+02 0.0024 35.1 8.4 14 47-60 91-104 (460)
75 PRK09173 F0F1 ATP synthase sub 39.4 3.6E+02 0.0077 25.9 14.6 19 185-204 49-67 (159)
76 TIGR01069 mutS2 MutS2 family p 39.3 3.9E+02 0.0085 32.7 13.1 7 31-37 267-273 (771)
77 KOG4722 Zn-finger protein [Gen 38.9 6.8E+02 0.015 29.0 16.5 40 175-214 314-354 (672)
78 PF15346 ARGLU: Arginine and g 38.5 4.1E+02 0.0089 26.4 16.0 20 183-202 43-62 (149)
79 PF15437 PGBA_C: Plasminogen-b 38.3 1.3E+02 0.0027 27.2 6.6 37 235-271 46-82 (86)
80 COG4942 Membrane-bound metallo 37.4 6.9E+02 0.015 28.7 15.5 22 236-257 225-246 (420)
81 PF07946 DUF1682: Protein of u 37.0 1.4E+02 0.0031 32.2 8.3 15 97-113 187-201 (321)
82 PRK12705 hypothetical protein; 36.0 7.8E+02 0.017 28.9 17.6 8 288-295 185-192 (508)
83 PRK08475 F0F1 ATP synthase sub 35.7 4.4E+02 0.0095 25.9 13.7 10 193-202 76-85 (167)
84 PF00769 ERM: Ezrin/radixin/mo 35.6 5.5E+02 0.012 27.0 17.8 21 341-361 182-203 (246)
85 PRK11029 FtsH protease regulat 35.1 3.8E+02 0.0083 29.5 11.2 17 242-258 230-246 (334)
86 PTZ00491 major vault protein; 34.7 1E+03 0.022 29.8 16.3 8 183-190 678-685 (850)
87 KOG0336 ATP-dependent RNA heli 34.5 37 0.0008 38.8 3.4 33 21-53 215-249 (629)
88 PF15346 ARGLU: Arginine and g 34.1 4.8E+02 0.01 25.9 13.1 36 229-266 61-96 (149)
89 PF15236 CCDC66: Coiled-coil d 33.8 5E+02 0.011 26.0 14.6 9 153-161 50-58 (157)
90 KOG3654 Uncharacterized CH dom 33.7 2.4E+02 0.0052 33.1 9.5 33 448-486 615-648 (708)
91 KOG0742 AAA+-type ATPase [Post 33.5 8.5E+02 0.018 28.6 17.3 62 554-615 468-540 (630)
92 KOG4722 Zn-finger protein [Gen 31.7 8.1E+02 0.017 28.5 13.0 18 404-421 536-554 (672)
93 PRK13453 F0F1 ATP synthase sub 31.2 5.2E+02 0.011 25.4 14.7 13 192-204 71-83 (173)
94 KOG2507 Ubiquitin regulatory p 31.0 80 0.0017 36.1 5.3 22 522-543 413-434 (506)
95 PF12128 DUF3584: Protein of u 30.1 1.3E+03 0.028 29.7 21.3 15 150-164 602-616 (1201)
96 PRK13455 F0F1 ATP synthase sub 30.0 5.5E+02 0.012 25.3 14.8 13 192-204 80-92 (184)
97 PRK00409 recombination and DNA 29.5 7.9E+02 0.017 30.2 13.6 18 199-216 492-509 (782)
98 TIGR01933 hflK HflK protein. H 29.5 4.9E+02 0.011 26.8 10.5 6 70-75 31-36 (261)
99 TIGR03738 PRTRC_C PRTRC system 29.4 34 0.00074 29.5 1.6 16 18-33 16-31 (66)
100 KOG0161 Myosin class II heavy 29.0 1.7E+03 0.037 30.7 17.2 236 139-398 1616-1862(1930)
101 KOG2357 Uncharacterized conser 28.7 2.4E+02 0.0053 32.2 8.4 13 121-134 304-316 (440)
102 PF06991 Prp19_bind: Splicing 28.7 6.3E+02 0.014 27.3 11.3 14 112-125 26-39 (276)
103 KOG1999 RNA polymerase II tran 28.6 53 0.0012 40.7 3.6 53 96-148 61-114 (1024)
104 KOG2141 Protein involved in hi 28.3 2.5E+02 0.0053 34.3 8.8 170 363-568 312-482 (822)
105 PRK09174 F0F1 ATP synthase sub 27.9 6.7E+02 0.015 25.7 13.2 23 183-206 98-120 (204)
106 PRK14473 F0F1 ATP synthase sub 27.8 5.6E+02 0.012 24.7 14.7 14 191-204 60-73 (164)
107 PF10168 Nup88: Nuclear pore c 27.6 1.2E+03 0.026 28.5 14.8 17 200-216 602-618 (717)
108 PF12297 EVC2_like: Ellis van 26.0 9.8E+02 0.021 27.6 12.5 47 151-202 198-244 (429)
109 PF09726 Macoilin: Transmembra 25.8 1.3E+03 0.028 28.2 16.5 18 383-400 594-611 (697)
110 PF14454 Prok_Ub: Prokaryotic 25.3 45 0.00098 28.6 1.7 16 19-34 18-33 (65)
111 TIGR01069 mutS2 MutS2 family p 24.6 1.1E+03 0.024 29.0 13.6 8 458-465 747-754 (771)
112 KOG2689 Predicted ubiquitin re 24.4 9.3E+02 0.02 26.4 11.4 17 222-238 119-135 (290)
113 TIGR02680 conserved hypothetic 24.3 1.7E+03 0.037 29.2 16.9 21 151-171 233-255 (1353)
114 PF09756 DDRGK: DDRGK domain; 24.2 25 0.00055 35.7 0.0 13 348-360 100-112 (188)
115 KOG0971 Microtubule-associated 23.7 1.6E+03 0.035 28.7 15.7 18 147-164 223-240 (1243)
116 smart00582 RPR domain present 23.7 3.9E+02 0.0084 24.1 7.6 50 532-581 37-87 (121)
117 TIGR03319 YmdA_YtgF conserved 23.0 1.2E+03 0.027 27.1 19.5 6 370-375 255-260 (514)
118 PRK12704 phosphodiesterase; Pr 22.7 1.3E+03 0.028 27.1 20.0 18 282-299 187-204 (520)
119 PLN02316 synthase/transferase 22.6 3E+02 0.0065 35.0 8.5 16 499-514 689-704 (1036)
120 PRK00409 recombination and DNA 22.3 1.4E+03 0.031 28.0 14.0 8 458-465 758-765 (782)
121 PLN02316 synthase/transferase 22.2 3.1E+02 0.0067 34.8 8.6 7 503-509 720-726 (1036)
122 KOG4848 Extracellular matrix-a 21.7 9.4E+02 0.02 25.2 14.0 34 179-216 128-161 (225)
123 PRK02292 V-type ATP synthase s 21.3 7.9E+02 0.017 24.1 10.7 68 224-291 8-77 (188)
124 TIGR02680 conserved hypothetic 20.9 2E+03 0.043 28.6 18.3 32 153-185 302-333 (1353)
125 PF10498 IFT57: Intra-flagella 20.4 1.2E+03 0.027 26.0 15.2 38 126-164 186-226 (359)
No 1
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=100.00 E-value=2.4e-96 Score=791.24 Aligned_cols=563 Identities=34% Similarity=0.520 Sum_probs=465.5
Q ss_pred CCccccccCCCCcccccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccccceEEEecccc
Q 006353 1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE 79 (649)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~ 79 (649)
||+ .|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+. ++++..|||.|++++
T Consensus 1 e~~-pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d-------~~~~~~~~~~~~e~e 72 (591)
T KOG2412|consen 1 EGI-PLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRD-------GRRGGGFVMHVSEDE 72 (591)
T ss_pred CCC-CCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHh-------hhccCCccchhHHHH
Confidence 566 89999999999999999999999999999999999999999 999999887776 678999999999999
Q ss_pred ccccc-----cccccccccCccccccceecccccccCCCCCccccccCCcc-ccccccccchhhhHHhhhhccccchHHH
Q 006353 80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI 153 (649)
Q Consensus 80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~e~~~~~~~~~~e~~ 153 (649)
++++. +...++.+++.+++|++|+|+.||++|.++++ +++++ +.|++.++..+. .++|++.+..++
T Consensus 73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~ 144 (591)
T KOG2412|consen 73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI 144 (591)
T ss_pred HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence 98765 55678899999999999999999999988777 77788 888999999888 489999999999
Q ss_pred HHHHHHHHHHHhh-hhHHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHH
Q 006353 154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY 232 (649)
Q Consensus 154 r~~~~~le~~~~~-e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~~r~~e~~~q~~er~~r~~~a~ 232 (649)
|.++..+..-..+ ++...++.+..++++-++|.|+.+++ .++|++++..+|+|++.++|++++.+||.+|++++++..
T Consensus 145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr 223 (591)
T KOG2412|consen 145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR 223 (591)
T ss_pred hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999887766555 77778999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCcc
Q 006353 233 EEAKRKERALQEEKIRQEKVKAEAE--AKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSS 310 (649)
Q Consensus 233 ~ea~~ke~~~~e~~~r~~~~~~~~e--a~~~a~~~~~~a~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (649)
.||.|+++++||++.+.+.+.++++ ++.|++|.| .|.++|++.++++.+...... .. .++..+.
T Consensus 224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek---qeee~ke~e~~~~k~~q~~~~-~e----------ek~a~qk 289 (591)
T KOG2412|consen 224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEK---QEEERKEAEEQAEKEVQDPKA-HE----------EKLAEQK 289 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchh-cc----------ccccccc
Confidence 9999999999988888777655544 566666544 222223322222221110000 00 0011122
Q ss_pred cccccccCCCCCCcchhhhhhhhccHHHHHHHHHHHHHHHHHHHHH-hhccccccccccccccccccccccccCchhh-H
Q 006353 311 VIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEEN-QSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-V 388 (649)
Q Consensus 311 ~~~~~~~~~~~~d~~~k~~~~~~a~~sal~~~~~rhk~LKelr~~~-~~lks~lkk~~~~~KRqI~~kIGQLSns~~Q-I 388 (649)
+..|.+... +......++.++.++...|.--... +..++.++.-..+++|.||+.|||||++..| |
T Consensus 290 ~~~~~~~~~------------~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~~~kr~in~~~~qis~~~~q~L 357 (591)
T KOG2412|consen 290 AVIEKVTTS------------SASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQSLKRAINPPFSQISKSNGQVL 357 (591)
T ss_pred cccccccCC------------chhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhhhhhccHHHH
Confidence 222211111 1111112222223333333221111 1123446677779999999999999999988 9
Q ss_pred HHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHhhhcCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhccccee
Q 006353 389 RTKASELVKILNNP-----LCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIY 460 (649)
Q Consensus 389 ~~Is~eL~~lL~~~-----qlP~~~~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~ 460 (649)
..|++.|.+++++. ++.|.||+|+|||++|+|+|++ +|.+|||||+|++.||++||+|+|+|||||||+|||
T Consensus 358 ~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~ 437 (591)
T KOG2412|consen 358 RQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPY 437 (591)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCc
Confidence 99999999999864 3458899999999999999994 678999999999999999999999999999999999
Q ss_pred eccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCcchHHHHHHH
Q 006353 461 TVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLAR 535 (649)
Q Consensus 461 lVP~~~~~~k~~~qTeEey~K~mGYR~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~----~~~nP~gi~~~WkWLAR 535 (649)
+||||++. ++|.|.|+|||+. ++|+||..+.|++||+||+||||||+++++| +.-||||+.+||.||||
T Consensus 438 ~VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~ 511 (591)
T KOG2412|consen 438 VVPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLAR 511 (591)
T ss_pred cccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHH
Confidence 99999863 3799999999997 7789999999999999999999999999986 34589999999999999
Q ss_pred HhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhcccccCCC
Q 006353 536 FLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE 613 (649)
Q Consensus 536 ILN~~P~~~ita~VL~afLevAG~~Ll~~YG~QF~KLL~lI~~df~p~L~~~~~p~~~~~v~rLe~~L~dk~~l~ePE 613 (649)
|||+.|.+++||++|.+||++||+.|++.||+||+|||.+|.++|+|++.++++.|.......|+.|+ |.+++..|+
T Consensus 512 iln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g~~rl~ill~~~l-~~q~~~~~~ 588 (591)
T KOG2412|consen 512 ILNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTGDLRLRILLEAWL-DRQYLKEPE 588 (591)
T ss_pred HhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-Hhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999997777788899999999 788888887
No 2
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=100.00 E-value=1.5e-60 Score=485.20 Aligned_cols=230 Identities=35% Similarity=0.550 Sum_probs=183.7
Q ss_pred HHHHHHHHHhh---ccccccccccccccccccccccccCchhhHHHHHHHHHHHhcC--------------CCChHHHHH
Q 006353 348 KLKELDEENQS---LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNN--------------PLCPQSISL 410 (649)
Q Consensus 348 ~LKelr~~~~~---lks~lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~--------------~qlP~~~~L 410 (649)
.++++++.+.. .++.+|+.++++||+||++|||||++.+||.+|+++|.++|++ +++++.|+|
T Consensus 4 ~i~~~k~~~~~~~~~d~~lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l 83 (256)
T PF07817_consen 4 KIKQIKQALKEPVKSDPSLKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLL 83 (256)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHH
Confidence 44455554444 3367999999999999999999999999999999999999653 234578999
Q ss_pred HHHHHHHHhhhcCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhcccceeeccccccccccccccHHHHHHHcCccc
Q 006353 411 ATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE 487 (649)
Q Consensus 411 n~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~ 487 (649)
|+|||+||+|||++ ++++|||+|.|++.||..||+|+|+||||||++|||+||+|+++. .++++++|+++|||+.
T Consensus 84 ~~lAk~iv~Q~e~ev~~~~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~--~~~~~e~~~k~lGyk~ 161 (256)
T PF07817_consen 84 NFLAKKIVSQAETEVSANPESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFT--CDQSTEEYRKRLGYKR 161 (256)
T ss_dssp HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T-------SSHHHHHHTT--B
T ss_pred HHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCccc--CCCCHHHHHHHcCCcc
Confidence 99999999999995 678999999999999999999999999999999999999999864 3568899999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHH
Q 006353 488 EDGKIESLENYLSRLKSYMRLYAALIQTEIPGV-Q--NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKK 564 (649)
Q Consensus 488 ~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~-~--nP~gi~~~WkWLARILN~~P~~~ita~VL~afLevAG~~Ll~~ 564 (649)
+||+||++++|++||+||++|||||+|+++++. . ||||++++|+|||||||++|.+++|++||++||++||++|+++
T Consensus 162 ~~~~~E~~~~y~~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~lN~~p~~~~~~~lL~~~Le~ag~~l~~~ 241 (256)
T PF07817_consen 162 DDGGWESEDQYLKRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARILNLPPAPNITATLLHSFLEVAGFRLLQI 241 (256)
T ss_dssp -TTSB--HHHHHHHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS-CC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 777799999999999999999999999998733 2 7999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006353 565 YKSQFRKILDNIYDN 579 (649)
Q Consensus 565 YG~QF~KLL~lI~~d 579 (649)
||+||.|||.+|.++
T Consensus 242 Yg~Qf~Kll~~i~~~ 256 (256)
T PF07817_consen 242 YGRQFVKLLQLISEH 256 (256)
T ss_dssp HTHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999864
No 3
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.83 E-value=7.3e-05 Score=83.72 Aligned_cols=135 Identities=26% Similarity=0.286 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCC
Q 006353 228 SDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPD 307 (649)
Q Consensus 228 ~~~a~~ea~~ke~~~~e~~~r~~~~~~~~ea~~~a~~~~~~a~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 307 (649)
+.++.+|++|+.+.++.++..+|+.|++.+ +++|.+|++.++++|++.-.++.|.+..-++...+.++.+. .+|
T Consensus 229 k~~~~qEe~Rqk~d~~~~~~eqekiR~~ee---kqeee~ke~e~~~~k~~q~~~~~eek~a~qk~~~~~~~~~~---~~d 302 (591)
T KOG2412|consen 229 KRRAHQEELRQKEDEEAELQEQEKIRAEEE---KQEEERKEAEEQAEKEVQDPKAHEEKLAEQKAVIEKVTTSS---ASD 302 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCchhccccccccccccccccCCc---hhH
Confidence 344445555554455555555666666554 36666677777777776655555555433332222221111 111
Q ss_pred CcccccccccCCCCCCcchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccCc
Q 006353 308 DSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGL 384 (649)
Q Consensus 308 ~~~~~~~~~~~~~~~d~~~k~~~~~~a~~sal~~~~~rhk~LKelr~~~~~lks~lkk~~~~~KRqI~~kIGQLSns 384 (649)
. +..++. ...++.+.+....-+.++.-++++++..+|...+..+|.+-.-+..+|-||++.
T Consensus 303 s-------~m~w~~---------~d~i~q~k~d~v~pi~~kd~~lk~~~~~~kr~in~~~~qis~~~~q~L~qI~dk 363 (591)
T KOG2412|consen 303 S-------QMFWNS---------QDAIAQSKLDLVNPILKKDEELKNYNQSLKRAINPPFSQISKSNGQVLRQIFDK 363 (591)
T ss_pred H-------HhhhhH---------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhhhhhccHHHHHHHHHH
Confidence 1 222211 136677888888888888888888888877656666665544433334344443
No 4
>PTZ00121 MAEBL; Provisional
Probab=97.39 E-value=0.0036 Score=76.59 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=4.5
Q ss_pred HhHHHhhhh
Q 006353 183 DMRREMDRK 191 (649)
Q Consensus 183 ~~r~E~~r~ 191 (649)
++|++-++|
T Consensus 1132 eARrae~~R 1140 (2084)
T PTZ00121 1132 EARKAEDAR 1140 (2084)
T ss_pred HHhhHHHHH
Confidence 455555544
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.014 Score=68.20 Aligned_cols=9 Identities=11% Similarity=-0.038 Sum_probs=4.3
Q ss_pred ccceecccc
Q 006353 99 VKRFTCDAL 107 (649)
Q Consensus 99 ~~~f~~~~~ 107 (649)
.+.|++.|-
T Consensus 198 ~QlFNa~Dk 206 (1118)
T KOG1029|consen 198 RQLFNALDK 206 (1118)
T ss_pred HHHhhhccc
Confidence 344555443
No 6
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.83 E-value=0.013 Score=71.32 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=6.7
Q ss_pred CCHHHHHHHH
Q 006353 25 WSFDALLSEL 34 (649)
Q Consensus 25 w~~~~~~~e~ 34 (649)
||||-++-||
T Consensus 227 WSLG~ILYEL 236 (1021)
T PTZ00266 227 WALGCIIYEL 236 (1021)
T ss_pred HHHHHHHHHH
Confidence 6777666665
No 7
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.093 Score=61.74 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHHHHHHhhhhHHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHh
Q 006353 148 GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKI 226 (649)
Q Consensus 148 ~~~e~~r~~~~~le~~~~~e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~~r~~e~~~q~~er~~ 226 (649)
|=|.|+..++++|| +|-||..+.+++.|++.+.|||=+| ....|+.-..|++. ++|.||+..|-||.+.
T Consensus 324 kGqaELerRRq~le----eqqqreree~eqkEreE~ekkerer---qEqErk~qlElekq---LerQReiE~qrEEerk 392 (1118)
T KOG1029|consen 324 KGQAELERRRQALE----EQQQREREEVEQKEREEEEKKERER---QEQERKAQLELEKQ---LERQREIERQREEERK 392 (1118)
T ss_pred hhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34778888888998 5556666778888888888888775 33344444444443 3455665555544443
No 8
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.25 Score=53.26 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=7.2
Q ss_pred HhhhhcchHHHHHHHHH
Q 006353 187 EMDRKNDTVYQRKIAEA 203 (649)
Q Consensus 187 E~~r~~~~~~qr~iae~ 203 (649)
|++ |+..++|.++.|.
T Consensus 122 Ea~-kq~~~~qkqqeEq 137 (387)
T COG3064 122 EAE-KQAQLEQKQQEEQ 137 (387)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 444 3444444455443
No 9
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.35 E-value=0.34 Score=53.66 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=8.7
Q ss_pred HhhhhHHhHHHHHhhHHHH
Q 006353 164 LISENEQSNSALAQVEKDR 182 (649)
Q Consensus 164 ~~~e~~~~~~~~~~~ek~~ 182 (649)
++.+.......|..+++.+
T Consensus 92 l~~~~~~eq~rlk~le~er 110 (387)
T PRK09510 92 LQQKQAAEQERLKQLEKER 110 (387)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333445555555444
No 10
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.25 E-value=0.29 Score=57.68 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.7
Q ss_pred HHHcCcccCCCcc
Q 006353 480 YKTIGYREEDGKI 492 (649)
Q Consensus 480 ~K~mGYR~~dG~~ 492 (649)
.+.|||--=||.|
T Consensus 1168 k~gmWyaHFdGq~ 1180 (1259)
T KOG0163|consen 1168 KRGMWYAHFDGQW 1180 (1259)
T ss_pred ccceEEEecCcHH
Confidence 3457776556644
No 11
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.24 E-value=0.57 Score=51.98 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=7.0
Q ss_pred cccccccccchhhh
Q 006353 125 SYLMDEVGLADGAL 138 (649)
Q Consensus 125 ~~l~~~~~~~~~~l 138 (649)
+-.++-+=++++..
T Consensus 47 g~~i~AVmvD~~~v 60 (387)
T PRK09510 47 GSVIDAVMVDPGAV 60 (387)
T ss_pred cccccceecChHHH
Confidence 34555555555544
No 12
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.22 E-value=0.036 Score=67.63 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=14.0
Q ss_pred CCccccCCCCCCCccccccCccccccccccccc
Q 006353 612 PEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEY 644 (649)
Q Consensus 612 PEG~~m~~~~~s~~~~~~~~~~~~~~~~~~~~~ 644 (649)
|.-..--+.-||--+-.+..+-|-++|.-..+|
T Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1021)
T PTZ00266 952 PNELDRRNRSLSMCMNEQEKRRDSATYNAKKEY 984 (1021)
T ss_pred cchhccccchhhhhhChHhhcccccccchhhhc
Confidence 333333344445444444444443444333333
No 13
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=96.03 E-value=0.13 Score=48.82 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=114.0
Q ss_pred cccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCc-cHHHHH
Q 006353 372 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-QVMDIL 450 (649)
Q Consensus 372 RqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~P-ef~DIL 450 (649)
|+|+.-+|+|| ...+..++.+|.++.... ....+..+++.|+..+... |..+-.+|.++..|-..+| +|+..|
T Consensus 2 r~v~~~lnklt--~~n~~~~~~~l~~~~~~~---~~~~~~~i~~~i~~~a~~~-~~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 2 RKVRGILNKLT--PSNFESIIDELIKLNWSD---DPETLKEIVKLIFEKAVEE-PNFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHHHCS--STTHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHCC--HHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhhhhcC-chHHHHHHHHHHHHhccchhhHHHHH
Confidence 56777788888 445667777777776542 2345777778888776653 2467888889999999999 999888
Q ss_pred HHHhcccceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH
Q 006353 451 LGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGW 530 (649)
Q Consensus 451 LArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~~nP~gi~~~W 530 (649)
+.+++...-...+. ... + +....+..|+.|++++++-+..... .+....-
T Consensus 76 l~~~~~~f~~~~~~--------~~~-~---------------~~~~~~~~~~~~~~~fl~eL~~~~v------v~~~~i~ 125 (209)
T PF02854_consen 76 LNRCQEEFEERYSN--------EEL-E---------------ENRQSSKQRRRGNIRFLAELFNFGV------VSEKIIF 125 (209)
T ss_dssp HHHHHHHHHHHT-H--------HHH-H---------------HHHHHHHHHHHHHHHHHHHHHHTTS------SCHHHHH
T ss_pred HHHHHHHHHHhhhh--------hhH-H---------------HHHHHHHHHHhhhhhHHHhhHhhcc------ccchhHH
Confidence 88776554221100 000 0 1234667899999999999987542 2222333
Q ss_pred HHHHHHhCCC------CCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 006353 531 AWLARFLNAL------PANIYTAVALNAFLQLAGFALF--KKYKSQFRKILDNIYDNFL 581 (649)
Q Consensus 531 kWLARILN~~------P~~~ita~VL~afLevAG~~Ll--~~YG~QF~KLL~lI~~df~ 581 (649)
..+..++... |.......++..+|..+|..|. ......+..++..+.....
T Consensus 126 ~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~ 184 (209)
T PF02854_consen 126 DILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYAN 184 (209)
T ss_dssp HHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence 3444444432 2233568888899999999998 6666666666666555444
No 14
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.91 E-value=1.3 Score=47.95 Aligned_cols=23 Identities=61% Similarity=0.577 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006353 241 ALQEEKIRQEKVKAEAEAKLRAE 263 (649)
Q Consensus 241 ~~~e~~~r~~~~~~~~ea~~~a~ 263 (649)
++.|++...++++.+++++..||
T Consensus 196 aEaEAkaa~ekAk~e~~aka~AE 218 (387)
T COG3064 196 AEAEAKAAAEKAKAEAEAKAKAE 218 (387)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455555566666666555555
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.54 E-value=0.49 Score=55.98 Aligned_cols=11 Identities=36% Similarity=0.894 Sum_probs=8.0
Q ss_pred HHHHHHhCCCC
Q 006353 531 AWLARFLNALP 541 (649)
Q Consensus 531 kWLARILN~~P 541 (649)
.|++|-+-..|
T Consensus 1179 q~I~RQm~l~~ 1189 (1259)
T KOG0163|consen 1179 QWIARQMELHP 1189 (1259)
T ss_pred HHHHhhheecC
Confidence 58888877654
No 16
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=93.84 E-value=1.2 Score=50.83 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred ccccceEEEeccccccccccccccccccCccccccceecccccccCCCCCccccccCC--ccccccccccchh
Q 006353 66 SNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGG--ESYLMDEVGLADG 136 (649)
Q Consensus 66 ~~~~~fv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 136 (649)
+.++-||+|+=|.+. +..|.+|=+.|.+..+-||=.++.- .+|||..-||.+.
T Consensus 47 ~~~~y~ii~~vd~~~------------------~~~~~ADi~~ig~~a~vdhI~nlrrIiagyl~~aygY~~~ 101 (489)
T PF05262_consen 47 SYGRYYIIHAVDPEE------------------KKKLDADIFIIGENARVDHINNLRRIIAGYLEAAYGYSDE 101 (489)
T ss_pred ccCcEEEEEecCccc------------------ccCCCCcEEEEcCCCCccHHHHHHHHHHHHHHHhcCCChh
Confidence 448889999865443 3334455566666665555444432 3366666666543
No 17
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=93.29 E-value=2.4 Score=40.52 Aligned_cols=168 Identities=19% Similarity=0.215 Sum_probs=105.4
Q ss_pred cccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCccHHHHHH
Q 006353 372 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 451 (649)
Q Consensus 372 RqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~Pef~DILL 451 (649)
++|+.-+|.|| .+.+..++.+|..+.... + -....+++.|+..+..+ +...-.+|.++..+...+|+|+..|+
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~--~--~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~~f~~~ll 74 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD--K--NLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNPDFGSLLL 74 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887 467888888888888652 2 24555566666666553 24667788888888888887777776
Q ss_pred HHhcccceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHH
Q 006353 452 GEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWA 531 (649)
Q Consensus 452 Arf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~~nP~gi~~~Wk 531 (649)
..++..- -... + +......+|..|.+++.+-+..... .+....-.
T Consensus 75 ~~~~~~f--~~~~------------e---------------~~~~~~~~~~~~~i~fl~eL~~~~~------i~~~~i~~ 119 (200)
T smart00543 75 ERLQEEF--EKGL------------E---------------SEEESDKQRRLGLVRFLGELYNFQV------LTSKIILE 119 (200)
T ss_pred HHHHHHH--HHHH------------H---------------HHHHHhhhhHHhHHHHHHHHHHccc------CcHHHHHH
Confidence 6554331 0000 0 0112445788999999998876432 11222334
Q ss_pred HHHHHhCCC--C---CccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 006353 532 WLARFLNAL--P---ANIYTAVALNAFLQLAGFALF-KKYKSQFRKILDNIYDNFL 581 (649)
Q Consensus 532 WLARILN~~--P---~~~ita~VL~afLevAG~~Ll-~~YG~QF~KLL~lI~~df~ 581 (649)
.+..+++.. | .......++..+|..+|..|. .....-+..++..+...+.
T Consensus 120 ~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~ 175 (200)
T smart00543 120 LLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLL 175 (200)
T ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHh
Confidence 444444431 1 123578899999999999999 6666666666666555443
No 18
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=93.17 E-value=0.38 Score=57.03 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHHHHHHHhh-CccHHHHHHHHhcccceeeccccccccccccccHHHHHHHcCccc-CCCcc---------cchhhHHH
Q 006353 432 CGYVIVLVASQ-VPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKI---------ESLENYLS 500 (649)
Q Consensus 432 LA~V~v~L~~~-~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~-~dG~~---------Ese~~Ylk 500 (649)
||.+++-|+.+ .|.-+.-|-=.=.++|||+|...- --|+.||.. .++.+ -....|..
T Consensus 566 ~aIlvvdImhGlepqtiESi~lLR~rktpFivALNK------------iDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 566 LAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNK------------IDRLYGWKSCPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred eEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehh------------hhhhcccccCCCchHHHHHHHhhHHHHHHHHH
Confidence 34444444433 233333333333688999998741 125788875 44322 23568899
Q ss_pred HHHHHHHHHHHHH
Q 006353 501 RLKSYMRLYAALI 513 (649)
Q Consensus 501 RMtGI~rLYAAIi 513 (649)
|+.-|+-=|+-.-
T Consensus 634 R~~~ii~efaEQg 646 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQG 646 (1064)
T ss_pred HHHHHHHHHHHcc
Confidence 9999987776543
No 19
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=92.48 E-value=0.62 Score=53.43 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=99.4
Q ss_pred HHHHHHHHhhcccc--ccccccccccccccccccccCchhhHHHHHHHHH--HHhcCCCChHHHHHHHHHHHHHh-hhcC
Q 006353 349 LKELDEENQSLKLS--SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELV--KILNNPLCPQSISLATFSKKVVS-RCET 423 (649)
Q Consensus 349 LKelr~~~~~lks~--lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~--~lL~~~qlP~~~~Ln~lAKaIVs-QaEt 423 (649)
|+.+.+++.+..+. ...+|-.+|+.|++.||.++.+ .|..|..+|. ++|.+ -++|++.||. |+-+
T Consensus 141 L~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~s--Ni~~ii~eLfqeNiirg--------Rgl~crsv~~aq~as 210 (739)
T KOG2140|consen 141 LRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNAS--NIQEIIRELFQENIIRG--------RGLLCRSVMQAQAAS 210 (739)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHH--HHHHHHHHHHHHHHHhc--------cchhHHHHHHHHhcC
Confidence 33444455555532 4458889999999999998754 4445544443 23333 3455666664 5555
Q ss_pred CCCCcchhHHHHHHHHHhhCccHHHHHHHHhcccceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHH
Q 006353 424 PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLK 503 (649)
Q Consensus 424 ~~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~~dG~~Ese~~YlkRMt 503 (649)
|. ..-.+|.+++.|-+.||++|.+|+-+|.. -|- -+|+..| +=|+
T Consensus 211 p~--ft~vyaALvAviNskfP~IgElLlkrLil------qf~-----------------r~f~RnD----------k~~c 255 (739)
T KOG2140|consen 211 PG--FTPVYAALVAVINSKFPQIGELLLKRLIL------QFK-----------------RSFRRND----------KVSC 255 (739)
T ss_pred CC--CcHHHHHHHHHHccCCchHHHHHHHHHHH------HHH-----------------HHhcccc----------hHHH
Confidence 53 55678888999999999999999988742 221 1233222 2345
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 006353 504 SYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKS 567 (649)
Q Consensus 504 GI~rLYAAIiqt~~~~~~nP~gi~~~WkWLARILN~~P~~~ita~VL~afLevAG~~Ll~~YG~ 567 (649)
|-+.-|.|++... +-.|-+ -+-..|.-+|-. | .+-..-|..+||..||..|..+=.+
T Consensus 256 ~~~~kfiahLinq----~VahEI-v~Leil~lLLe~-P-TddSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 256 LNASKFIAHLINQ----QVAHEI-VALEILTLLLER-P-TDDSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHHHHHHHHHHHH----HHHHHH-HHHHHHHHHhcC-C-CCchHHHHHHHHHHHHHHHHHhChH
Confidence 5444455544311 101111 245566666664 4 3344666778999999998766443
No 20
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=8.6 Score=43.71 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=39.9
Q ss_pred hhHHhhhhcccc-chHHHHHHHHHHHHHHhhhhHHhHHHHHhhHHHHHhHHHhhhhcchHHHH
Q 006353 137 ALVELTHQHQLG-VKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQR 198 (649)
Q Consensus 137 ~l~e~~~~~~~~-~~e~~r~~~~~le~~~~~e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr 198 (649)
+|-|+++-.+-| |-|-+|.+-..+..+.+++.+.-.+..+...-++-..-.-|+|...|.|.
T Consensus 84 Alrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qa 146 (630)
T KOG0742|consen 84 ALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEET 146 (630)
T ss_pred HHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 577887776666 55667777777777777877766666665555554444555555555444
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.96 E-value=7.9 Score=47.41 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.5
Q ss_pred cchHHHHHHHHHHH
Q 006353 148 GVKEEIRNLISTLE 161 (649)
Q Consensus 148 ~~~e~~r~~~~~le 161 (649)
+..|++...+..||
T Consensus 773 ~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELE 786 (1018)
T ss_pred ccHHHHHHHHHHHH
Confidence 34444444444444
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.21 E-value=24 Score=42.35 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=34.4
Q ss_pred ccccccccccccccccccccccccCchhhHHHHHHHHHHHhc
Q 006353 359 LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN 400 (649)
Q Consensus 359 lks~lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~ 400 (649)
+|-.|=..+|+-||+|.-.-+||..-...|...-..|.+++.
T Consensus 616 iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 616 IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566688999999999999999888888888888888775
No 23
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=86.86 E-value=49 Score=35.63 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=12.1
Q ss_pred ccccccccchh--hhHHhhhhcccc
Q 006353 126 YLMDEVGLADG--ALVELTHQHQLG 148 (649)
Q Consensus 126 ~l~~~~~~~~~--~l~e~~~~~~~~ 148 (649)
|-||-.+|.-+ +|.||.+-.+-+
T Consensus 27 ~~FDP~aLERaAkAlrel~~S~~Ak 51 (276)
T PF12037_consen 27 SGFDPEALERAAKALRELNSSPHAK 51 (276)
T ss_pred CCCCcHHHHHHHHHHHHHhcChhHH
Confidence 45555555433 466666655544
No 24
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=86.78 E-value=21 Score=41.13 Aligned_cols=7 Identities=57% Similarity=0.771 Sum_probs=3.2
Q ss_pred eEEEecc
Q 006353 71 FVIRVSD 77 (649)
Q Consensus 71 fv~r~~~ 77 (649)
-|+=+.+
T Consensus 156 I~IPL~~ 162 (489)
T PF05262_consen 156 IVIPLSD 162 (489)
T ss_pred EEEeccc
Confidence 4444443
No 25
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=86.38 E-value=36 Score=33.55 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=14.4
Q ss_pred HHhHHHhhhhcchHHHHHHHHHH
Q 006353 182 RDMRREMDRKNDTVYQRKIAEAL 204 (649)
Q Consensus 182 ~~~r~E~~r~~~~~~qr~iae~~ 204 (649)
...|.|++ .+..+|+..+.++.
T Consensus 48 e~~r~eA~-~l~~e~e~~L~~Ar 69 (154)
T PRK06568 48 EKLKEDAA-LLFEQTNAQIKKLE 69 (154)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566666 66777777777755
No 26
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=85.73 E-value=18 Score=42.97 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.9
Q ss_pred cCCCccccCC
Q 006353 610 EEPEGRTLQA 619 (649)
Q Consensus 610 ~ePEG~~m~~ 619 (649)
+.|.|-.++.
T Consensus 769 p~~d~~~~p~ 778 (811)
T KOG4364|consen 769 PDKDGKRLPK 778 (811)
T ss_pred CCCccccCCC
Confidence 4556666664
No 27
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.55 E-value=72 Score=36.29 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHHhccCC
Q 006353 25 WSFDALLSELNSLETRLNASS 45 (649)
Q Consensus 25 w~~~~~~~e~~~~~~~~~~~~ 45 (649)
=.++..-.||.+++.++....
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~ 58 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ 58 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777776655
No 28
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=5.7 Score=41.93 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhh
Q 006353 410 LATFSKKVVSRC 421 (649)
Q Consensus 410 Ln~lAKaIVsQa 421 (649)
|+.+||-|-.+.
T Consensus 262 l~AVAkfIkqrG 273 (299)
T KOG3054|consen 262 LAAVAKFIKQRG 273 (299)
T ss_pred HHHHHHHHHHcC
Confidence 666777655444
No 29
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=85.04 E-value=18 Score=43.00 Aligned_cols=9 Identities=44% Similarity=0.489 Sum_probs=3.9
Q ss_pred CCCCCHHHH
Q 006353 22 EPDWSFDAL 30 (649)
Q Consensus 22 ~p~w~~~~~ 30 (649)
+||=.|+++
T Consensus 50 ~~d~~~~d~ 58 (811)
T KOG4364|consen 50 EMDGLFDDF 58 (811)
T ss_pred ccchhHHHH
Confidence 444444443
No 30
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=83.70 E-value=14 Score=43.16 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=5.8
Q ss_pred hhhHHHHHHH
Q 006353 212 QRDHELKSQI 221 (649)
Q Consensus 212 ~r~~e~~~q~ 221 (649)
+|++|+|.++
T Consensus 632 ~rerEqR~~a 641 (940)
T KOG4661|consen 632 EREREQRRKA 641 (940)
T ss_pred HHHHHHHHHH
Confidence 4566666555
No 31
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=7.8 Score=40.99 Aligned_cols=7 Identities=86% Similarity=1.260 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 006353 232 YEEAKRK 238 (649)
Q Consensus 232 ~~ea~~k 238 (649)
++||.+|
T Consensus 137 ~eE~erK 143 (299)
T KOG3054|consen 137 YEEAERK 143 (299)
T ss_pred HHHHHHh
Confidence 4555444
No 32
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=81.18 E-value=9.7 Score=45.87 Aligned_cols=53 Identities=32% Similarity=0.411 Sum_probs=26.7
Q ss_pred hhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006353 206 NHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAE 263 (649)
Q Consensus 206 ~~~~~~~r~~e~~~q~~er~~r~~~a~~ea~~ke~~~~e~~~r~~~~~~~~ea~~~a~ 263 (649)
+|++++|+.-+.+.+.+||+.|++ ||.-|+ +++|++.|.++.+++.|||+++.
T Consensus 214 Kgv~~~qe~La~~qe~eE~qkree---EE~~r~--eeEEer~~ee~E~~~eEak~kkK 266 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEERQKREE---EERLRR--EEEEERRREEEEAQEEEAKEKKK 266 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776666666666665543 222222 33334444444444444444444
No 33
>PTZ00491 major vault protein; Provisional
Probab=79.22 E-value=24 Score=42.97 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH
Q 006353 214 DHELKSQIEERKIRSDAAYEEAKRK 238 (649)
Q Consensus 214 ~~e~~~q~~er~~r~~~a~~ea~~k 238 (649)
|.|.|-+.+-.+|-+++..|++|++
T Consensus 676 eQea~g~Lerqk~~d~~~aE~~r~~ 700 (850)
T PTZ00491 676 EQEARGRLERQKMHDKAKAEEQRTK 700 (850)
T ss_pred HHHhhchhHHHhhhhHHHHHHHHHH
Confidence 4444444444555555555555544
No 34
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=78.69 E-value=78 Score=31.95 Aligned_cols=15 Identities=60% Similarity=0.623 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 006353 243 QEEKIRQEKVKAEAE 257 (649)
Q Consensus 243 ~e~~~r~~~~~~~~e 257 (649)
+++..+.++.|-+++
T Consensus 102 ~Ee~e~~~kQkeeae 116 (171)
T PF05672_consen 102 QEEQERLQKQKEEAE 116 (171)
T ss_pred HHHHHHHHHhHHHHH
Confidence 344444333333333
No 35
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=77.91 E-value=72 Score=31.14 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=17.5
Q ss_pred HhHHHhhhhcchHHHHHHHHHHhhhhhHHhhh
Q 006353 183 DMRREMDRKNDTVYQRKIAEALDNHLTAVQRD 214 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae~~d~~~~~~~r~ 214 (649)
..|+|.+ .+..+|+.+++.+..+....+...
T Consensus 55 ~~k~eAe-~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 55 RLREEAQ-ALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 566677777777654444443333
No 36
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=77.67 E-value=21 Score=38.43 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhc
Q 006353 410 LATFSKKVVSRCE 422 (649)
Q Consensus 410 Ln~lAKaIVsQaE 422 (649)
+.-+||-+|...-
T Consensus 357 ~~~~ak~~id~g~ 369 (379)
T COG5269 357 FDEFAKMFIDRGK 369 (379)
T ss_pred HHHHHHHHHhcCC
Confidence 4555666655443
No 37
>PRK12704 phosphodiesterase; Provisional
Probab=76.88 E-value=1.5e+02 Score=34.46 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=2.8
Q ss_pred hhhhhhc
Q 006353 288 NSKRITA 294 (649)
Q Consensus 288 ~~~~~~~ 294 (649)
.+++.++
T Consensus 197 a~qr~a~ 203 (520)
T PRK12704 197 AIQRCAA 203 (520)
T ss_pred HHHhhcc
Confidence 3444333
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.64 E-value=1.5e+02 Score=34.45 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=4.6
Q ss_pred HhhCccHHHHH
Q 006353 440 ASQVPQVMDIL 450 (649)
Q Consensus 440 ~~~~Pef~DIL 450 (649)
...||++..+|
T Consensus 307 ~~~~~~~~~~l 317 (514)
T TIGR03319 307 HGLHPELIKLL 317 (514)
T ss_pred CcCCHHHHHHH
Confidence 33344444433
No 39
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=75.37 E-value=81 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=16.0
Q ss_pred HhHHHhhhhcchHHHHHHHHHHhhhhhH
Q 006353 183 DMRREMDRKNDTVYQRKIAEALDNHLTA 210 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae~~d~~~~~ 210 (649)
+++.|.+ .+..+|+.+++++..+....
T Consensus 53 ~~~~ea~-~~~~e~e~~l~~A~~ea~~i 79 (164)
T PRK14471 53 EARKEMQ-NLQADNERLLKEARAERDAI 79 (164)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3455555 55667777777766444333
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=73.40 E-value=87 Score=38.98 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=10.5
Q ss_pred hhhhcchHHHHHHHHHHhhhhhH
Q 006353 188 MDRKNDTVYQRKIAEALDNHLTA 210 (649)
Q Consensus 188 ~~r~~~~~~qr~iae~~d~~~~~ 210 (649)
+|..+....+++.|-.+=+||+.
T Consensus 775 ~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 775 LEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555444444443
No 41
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=72.66 E-value=27 Score=39.15 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 006353 213 RDHELKSQIEERKIR-SDAAYEEAKRKERALQEEKIRQEKV 252 (649)
Q Consensus 213 r~~e~~~q~~er~~r-~~~a~~ea~~ke~~~~e~~~r~~~~ 252 (649)
++||...+.-..+.- .++...||..|-|+.+|+..++=+|
T Consensus 84 kd~eae~~~~akk~a~kea~ra~~~akkraa~eee~k~wka 124 (510)
T PF04747_consen 84 KDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKKWKA 124 (510)
T ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 366654333322221 2333344444445777665554443
No 42
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=72.22 E-value=1.2e+02 Score=34.44 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=13.0
Q ss_pred hHHHhhhhcchHHHHHHHHHHhhh
Q 006353 184 MRREMDRKNDTVYQRKIAEALDNH 207 (649)
Q Consensus 184 ~r~E~~r~~~~~~qr~iae~~d~~ 207 (649)
+++|++ ....+|+.+++++..+.
T Consensus 47 a~~ea~-~~~~~~e~~L~~Ak~ea 69 (445)
T PRK13428 47 AADRLA-EADQAHTKAVEDAKAEA 69 (445)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 455555 45566666666655433
No 43
>PRK12472 hypothetical protein; Provisional
Probab=71.77 E-value=88 Score=36.25 Aligned_cols=13 Identities=54% Similarity=0.506 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 006353 251 KVKAEAEAKLRAE 263 (649)
Q Consensus 251 ~~~~~~ea~~~a~ 263 (649)
-||+.+++|+.+.
T Consensus 280 ~a~~~~~~~~~~~ 292 (508)
T PRK12472 280 TAKADAEAKRAAA 292 (508)
T ss_pred HHHHhHHHHHHHH
Confidence 3344444444433
No 44
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=71.25 E-value=1.6e+02 Score=31.92 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=15.9
Q ss_pred hhHHhhhhccccchHHHHHHHHHHH
Q 006353 137 ALVELTHQHQLGVKEEIRNLISTLE 161 (649)
Q Consensus 137 ~l~e~~~~~~~~~~e~~r~~~~~le 161 (649)
-.+|+++.+-.--|.|++.++...|
T Consensus 52 ~afel~k~QE~TkQ~E~~ak~~e~e 76 (276)
T PF12037_consen 52 KAFELMKKQEETKQAELQAKIAEYE 76 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777665555777766665555
No 45
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.45 E-value=1.4e+02 Score=30.51 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=12.6
Q ss_pred HhHHHhhhhcchHHHHHHHHHHh
Q 006353 183 DMRREMDRKNDTVYQRKIAEALD 205 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae~~d 205 (649)
+.|.|.+ .+-.+|+.+++++..
T Consensus 93 ~~~~eA~-~~l~e~e~~L~~A~~ 114 (205)
T PRK06231 93 ELKQQAQ-QLLENAKQRHENALA 114 (205)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444444 455667777777553
No 46
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=62.40 E-value=26 Score=27.56 Aligned_cols=8 Identities=63% Similarity=0.617 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 006353 259 KLRAEEAK 266 (649)
Q Consensus 259 ~~~a~~~~ 266 (649)
|+|++|+.
T Consensus 18 KqraAEA~ 25 (42)
T PF07046_consen 18 KQRAAEAT 25 (42)
T ss_pred HHHHHHHH
Confidence 33444443
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=58.85 E-value=45 Score=39.23 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.4
Q ss_pred hhccHHHHHH
Q 006353 332 VRATESALNI 341 (649)
Q Consensus 332 ~~a~~sal~~ 341 (649)
+--.+|||..
T Consensus 94 I~LPpSaL~~ 103 (567)
T PLN03086 94 IKLPPSCFTE 103 (567)
T ss_pred EEcCHHHHHH
Confidence 4456777765
No 48
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=57.44 E-value=2.5e+02 Score=29.48 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=5.6
Q ss_pred cchHHHHHHHHH
Q 006353 192 NDTVYQRKIAEA 203 (649)
Q Consensus 192 ~~~~~qr~iae~ 203 (649)
+..+|+.+++++
T Consensus 58 ~~~e~e~~l~~a 69 (250)
T PRK14474 58 EAERYRQKQQSL 69 (250)
T ss_pred HHHHHHHHHHHH
Confidence 334455555443
No 49
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=55.90 E-value=29 Score=39.92 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=14.5
Q ss_pred ccccCCCCCccccccCCcccc
Q 006353 107 LYLSESDDSDDDVALGGESYL 127 (649)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~l 127 (649)
=|...+||+|+|.....+||+
T Consensus 219 e~~eesDd~deEep~sqePyf 239 (615)
T KOG3540|consen 219 EYSEESDDEDEEEPSSQEPYF 239 (615)
T ss_pred ccccccccccccCCcccCCce
Confidence 344455777777777888865
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.55 E-value=3.1e+02 Score=35.32 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=12.1
Q ss_pred ccceEEEeccccccc
Q 006353 68 ARAFVIRVSDDELEN 82 (649)
Q Consensus 68 ~~~fv~r~~~~~~~~ 82 (649)
.-|||=-|+-|+|++
T Consensus 353 ~pP~vPevssd~DTs 367 (1317)
T KOG0612|consen 353 VPPVVPEVSSDDDTS 367 (1317)
T ss_pred CCCCCCcCCCCCccc
Confidence 567888898888876
No 51
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.20 E-value=3.2e+02 Score=29.96 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=3.2
Q ss_pred ccccccc
Q 006353 128 MDEVGLA 134 (649)
Q Consensus 128 ~~~~~~~ 134 (649)
|+-.|.+
T Consensus 230 meykgfa 236 (445)
T KOG2891|consen 230 MEYKGFA 236 (445)
T ss_pred HHHHhHH
Confidence 4444444
No 52
>PRK00106 hypothetical protein; Provisional
Probab=53.48 E-value=4.4e+02 Score=31.07 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.5
Q ss_pred cccccc
Q 006353 370 YEKDIS 375 (649)
Q Consensus 370 ~KRqI~ 375 (649)
+||.|.
T Consensus 276 vRReiA 281 (535)
T PRK00106 276 IRREIA 281 (535)
T ss_pred HHHHHH
Confidence 444443
No 53
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.25 E-value=3.4e+02 Score=29.73 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 006353 215 HELKSQIEERKIRSDAAYEEAK 236 (649)
Q Consensus 215 ~e~~~q~~er~~r~~~a~~ea~ 236 (649)
+|+..+.+|.+.|.+.|+|-.+
T Consensus 334 qeleqmaeeekkr~eeaeerqr 355 (445)
T KOG2891|consen 334 QELEQMAEEEKKREEEAEERQR 355 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555554444333
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.69 E-value=6.1e+02 Score=32.51 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhcc
Q 006353 30 LLSELNSLETRLNA 43 (649)
Q Consensus 30 ~~~e~~~~~~~~~~ 43 (649)
+-..+.+|...|..
T Consensus 523 ~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 523 LRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHhhCC
Confidence 33344555555543
No 55
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.45 E-value=4.6e+02 Score=31.04 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=4.0
Q ss_pred hhhHHhhhhc
Q 006353 136 GALVELTHQH 145 (649)
Q Consensus 136 ~~l~e~~~~~ 145 (649)
.++.+-++.-
T Consensus 269 i~~a~~e~e~ 278 (548)
T COG2268 269 IILAETEAEV 278 (548)
T ss_pred hhccHHHHHH
Confidence 3444444433
No 56
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=51.50 E-value=2.5e+02 Score=27.57 Aligned_cols=14 Identities=14% Similarity=-0.137 Sum_probs=7.1
Q ss_pred hcchHHHHHHHHHH
Q 006353 191 KNDTVYQRKIAEAL 204 (649)
Q Consensus 191 ~~~~~~qr~iae~~ 204 (649)
.+..+|+.+++++.
T Consensus 70 ~~~~e~e~~L~~a~ 83 (175)
T PRK14472 70 AILRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 57
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=51.19 E-value=1.8e+02 Score=32.91 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=7.0
Q ss_pred cHHHHHHHHHHH
Q 006353 335 TESALNIEQKRL 346 (649)
Q Consensus 335 ~~sal~~~~~rh 346 (649)
.+.+|++.++|+
T Consensus 414 dp~~leefkrri 425 (442)
T PF06637_consen 414 DPASLEEFKRRI 425 (442)
T ss_pred ChHHHHHHHHHH
Confidence 455566666554
No 58
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=50.96 E-value=5.9e+02 Score=31.80 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=29.5
Q ss_pred ccchHHHHHHHHHHHHHHhh-hhHHhHHHHHhhHHHHHhHHHhhhhcc
Q 006353 147 LGVKEEIRNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKND 193 (649)
Q Consensus 147 ~~~~e~~r~~~~~le~~~~~-e~~~~~~~~~~~ek~~~~r~E~~r~~~ 193 (649)
.|-.-|..+++..+|.-+.. |......+|--.+++-..|.+-|+.+=
T Consensus 676 ~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~ 723 (988)
T KOG2072|consen 676 EKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELY 723 (988)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Confidence 33345566666666655442 555667777777777777777776553
No 59
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.44 E-value=2.6e+02 Score=27.63 Aligned_cols=14 Identities=7% Similarity=0.029 Sum_probs=7.6
Q ss_pred hcchHHHHHHHHHH
Q 006353 191 KNDTVYQRKIAEAL 204 (649)
Q Consensus 191 ~~~~~~qr~iae~~ 204 (649)
.+-.+|+.+++++.
T Consensus 76 ~~~~e~e~~L~~A~ 89 (184)
T CHL00019 76 EKLEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455666666644
No 60
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=49.99 E-value=2.8e+02 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=13.6
Q ss_pred hhcchHHHHHHHHHHhhhhhHHhhh
Q 006353 190 RKNDTVYQRKIAEALDNHLTAVQRD 214 (649)
Q Consensus 190 r~~~~~~qr~iae~~d~~~~~~~r~ 214 (649)
|.....+|+.|...+.+..-..+.+
T Consensus 53 R~kq~E~q~ai~~QieEk~r~k~~E 77 (157)
T PF15236_consen 53 RQKQLEHQRAIKQQIEEKRRQKQEE 77 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777554444443333
No 61
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=49.85 E-value=3.2e+02 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=7.3
Q ss_pred hcchHHHHHHHHHH
Q 006353 191 KNDTVYQRKIAEAL 204 (649)
Q Consensus 191 ~~~~~~qr~iae~~ 204 (649)
.+..+|+.+++++.
T Consensus 57 ~~~~e~e~~l~~a~ 70 (246)
T TIGR03321 57 QERREYEEKNEELD 70 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445666666543
No 62
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.24 E-value=2.5e+02 Score=27.06 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=9.3
Q ss_pred HHHhhhhcchHHHHHHHHHH
Q 006353 185 RREMDRKNDTVYQRKIAEAL 204 (649)
Q Consensus 185 r~E~~r~~~~~~qr~iae~~ 204 (649)
+.|.+ .+..+|+.+++++.
T Consensus 69 ~~ea~-~~~~e~e~~L~~A~ 87 (156)
T CHL00118 69 LAKAN-ELTKQYEQELSKAR 87 (156)
T ss_pred HHHHH-HHHHHHHHHHHHHH
Confidence 33444 34445555555544
No 63
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=48.77 E-value=1.4e+02 Score=33.66 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=63.3
Q ss_pred CCCCCCCcchHHHHHH-----------------HHhCCCCCcc-chHHHHH----------------HHHHHHHHHHHHH
Q 006353 519 GVQNAHGLKEGWAWLA-----------------RFLNALPANI-YTAVALN----------------AFLQLAGFALFKK 564 (649)
Q Consensus 519 ~~~nP~gi~~~WkWLA-----------------RILN~~P~~~-ita~VL~----------------afLevAG~~Ll~~ 564 (649)
+.-.|-..+..|++|| ||.|...-.+ +|..++. +..+..|. ++++
T Consensus 258 gfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~nELg~RDyvTgei~kl~~P~ednrallVmnea~~e~~~n-~inF 336 (477)
T KOG2404|consen 258 GFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGNELGTRDYVTGEIQKLKCPIEDNRALLVMNEANYEAFGN-NINF 336 (477)
T ss_pred CccCCCCchhHHHHHHHHHhccCceEEEeccchhhhcccccchhhhHhHHhhcCCcccceeEEEecHhHHHHHhh-hhhh
Confidence 4445777789999998 4555432222 2333332 34445555 6788
Q ss_pred HHHHHHHHHHHH-HHHHhHhhhccCCchhHHHHHHHHHHHHh-cccccCCCcccc-CCCCCCCc
Q 006353 565 YKSQFRKILDNI-YDNFLNALKAREDSKLNLVIAEIQYYIED-KKFLEEPEGRTL-QAPPLSST 625 (649)
Q Consensus 565 YG~QF~KLL~lI-~~df~p~L~~~~~p~~~~~v~rLe~~L~d-k~~l~ePEG~~m-~~~~~s~~ 625 (649)
| .|.||+.-+ ..++...++ -......+.|+.|-.- .+..+.|=||++ +.++||.+
T Consensus 337 Y--~~K~l~kK~~~~el~s~ln----~t~sel~ttl~eY~~~~~g~~~D~fgrk~f~~s~is~t 394 (477)
T KOG2404|consen 337 Y--MFKKLFKKYESAELASALN----ITESELKTTLEEYSKSFTGKSEDPFGRKVFPVSDISPT 394 (477)
T ss_pred H--hHHHHHHHhhHHHHHHHhC----CCHHHHHHHHHHHHHhhcCCCCCcCCCccccCCCCCcc
Confidence 8 788887544 556666655 2345677888888764 577889999975 45777654
No 64
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=48.67 E-value=53 Score=35.55 Aligned_cols=28 Identities=32% Similarity=0.224 Sum_probs=17.4
Q ss_pred HHhhHHHHHhHHHhhhhcchHHHHHHHH
Q 006353 175 LAQVEKDRDMRREMDRKNDTVYQRKIAE 202 (649)
Q Consensus 175 ~~~~ek~~~~r~E~~r~~~~~~qr~iae 202 (649)
-.+-++.++.|+++-++++.++||++.|
T Consensus 285 ~~k~e~kr~e~~~~~~~lspeeQrK~ee 312 (321)
T PF07946_consen 285 EKKEEKKREERERKLSKLSPEEQRKYEE 312 (321)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444555555555555777777777776
No 65
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.39 E-value=2.9e+02 Score=27.12 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=7.1
Q ss_pred hcchHHHHHHHHHH
Q 006353 191 KNDTVYQRKIAEAL 204 (649)
Q Consensus 191 ~~~~~~qr~iae~~ 204 (649)
.+..+|+.+++++.
T Consensus 68 ~~~~e~e~~l~~a~ 81 (173)
T PRK13460 68 ALLKDYEARLNSAK 81 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 66
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=47.04 E-value=6.7e+02 Score=31.34 Aligned_cols=7 Identities=43% Similarity=0.477 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006353 245 EKIRQEK 251 (649)
Q Consensus 245 ~~~r~~~ 251 (649)
.++++++
T Consensus 820 ~ae~~ee 826 (988)
T KOG2072|consen 820 NAERQEE 826 (988)
T ss_pred HHHHHHH
Confidence 3334443
No 67
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=46.20 E-value=1.9e+02 Score=32.10 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006353 244 EEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKE 279 (649)
Q Consensus 244 e~~~r~~~~~~~~ea~~~a~~~~~~a~ea~~~~~~~ 279 (649)
.+|.-.+-+.++..++.+-+|-+|.|++++++.+.-
T Consensus 281 ~eK~~~~i~q~eeq~rkr~eE~~k~a~~~A~~~ass 316 (410)
T KOG4715|consen 281 MEKMAAEIAQAEEQARKRQEEREKEAAEQAEQSASS 316 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHhhHhhhhhhhhcc
Confidence 444444554555556666666666666666665544
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=45.00 E-value=2.5e+02 Score=33.52 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 006353 220 QIEERKI 226 (649)
Q Consensus 220 q~~er~~ 226 (649)
.+.|++.
T Consensus 628 RirE~re 634 (940)
T KOG4661|consen 628 RIREERE 634 (940)
T ss_pred HHHHHHH
Confidence 3333333
No 69
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=43.98 E-value=1.5e+02 Score=30.64 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.6
Q ss_pred CHHHHH
Q 006353 26 SFDALL 31 (649)
Q Consensus 26 ~~~~~~ 31 (649)
.||.+.
T Consensus 28 ~fGk~~ 33 (266)
T cd03404 28 RFGKYS 33 (266)
T ss_pred EcCccc
Confidence 344443
No 70
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.78 E-value=3.4e+02 Score=27.00 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=11.7
Q ss_pred HhHHHhhhhcchHHHHHHHHHH
Q 006353 183 DMRREMDRKNDTVYQRKIAEAL 204 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae~~ 204 (649)
+.+.|.+ .+..+|+.+++++.
T Consensus 76 ~~~~eA~-~~~~eye~~L~~Ar 96 (181)
T PRK13454 76 ELKQKAV-EAEKAYNKALADAR 96 (181)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH
Confidence 3444555 45566666666644
No 71
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=41.23 E-value=3.5e+02 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=11.6
Q ss_pred HhHHHhhhhcchHHHHHHHHHH
Q 006353 183 DMRREMDRKNDTVYQRKIAEAL 204 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae~~ 204 (649)
+.+.|.+ .+-.+|+.+++++.
T Consensus 64 ~~~~ea~-~~~~~~~~~L~~a~ 84 (174)
T PRK07352 64 ERLRQAA-QALAEAQQKLAQAQ 84 (174)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH
Confidence 3344444 45556666666654
No 72
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=41.06 E-value=1.8e+02 Score=29.80 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 006353 232 YEEAKRK 238 (649)
Q Consensus 232 ~~ea~~k 238 (649)
.+.||+|
T Consensus 85 ~eaAR~R 91 (190)
T PF06936_consen 85 MEAARRR 91 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 73
>PF07349 DUF1478: Protein of unknown function (DUF1478); InterPro: IPR009949 This family consists of several hypothetical Sapovirus VP3 proteins of around 165 residues in length. The function of this family is unknown.
Probab=40.38 E-value=25 Score=34.59 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=27.7
Q ss_pred CCCCCCcchHHHHHHHHhCCCCCcc-chHHHHHHHHHHHH
Q 006353 520 VQNAHGLKEGWAWLARFLNALPANI-YTAVALNAFLQLAG 558 (649)
Q Consensus 520 ~~nP~gi~~~WkWLARILN~~P~~~-ita~VL~afLevAG 558 (649)
..||.|+.++|+||--.+-.+|-+. ..+++|.+|.-..|
T Consensus 35 ~nNpmgp~nAW~WLL~lvqsn~MSl~qy~taL~S~~llLG 74 (162)
T PF07349_consen 35 RNNPMGPHNAWSWLLPLVQSNQMSLMQYATALQSFVLLLG 74 (162)
T ss_pred hcCCCCCchHHHHhcccCCCCcccHHHHHHHHHHHHHHHc
Confidence 4689999999999988777655433 35677777654444
No 74
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=40.23 E-value=1.1e+02 Score=35.13 Aligned_cols=14 Identities=21% Similarity=0.055 Sum_probs=5.6
Q ss_pred Cccccccccccccc
Q 006353 47 PVPFTKTKSREIST 60 (649)
Q Consensus 47 ~~p~~~~~~~~~~~ 60 (649)
.+|-+...+..|++
T Consensus 91 ~~~~s~~~l~~~~~ 104 (460)
T KOG1363|consen 91 GVPSSNGLLGGWSD 104 (460)
T ss_pred Cccccccccccccc
Confidence 33333333444444
No 75
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=39.39 E-value=3.6e+02 Score=25.94 Aligned_cols=19 Identities=42% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHhhhhcchHHHHHHHHHH
Q 006353 185 RREMDRKNDTVYQRKIAEAL 204 (649)
Q Consensus 185 r~E~~r~~~~~~qr~iae~~ 204 (649)
+.|.+ .+-.+|+.+++.+.
T Consensus 49 ~~eA~-~~~~~~e~~L~~A~ 67 (159)
T PRK09173 49 REEAQ-QLLAEYQRKRKEAE 67 (159)
T ss_pred HHHHH-HHHHHHHHHHHHHH
Confidence 33444 44455666666544
No 76
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.26 E-value=3.9e+02 Score=32.69 Aligned_cols=7 Identities=43% Similarity=0.524 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 006353 31 LSELNSL 37 (649)
Q Consensus 31 ~~e~~~~ 37 (649)
+.+|+.+
T Consensus 267 l~~lD~l 273 (771)
T TIGR01069 267 FDFLDSL 273 (771)
T ss_pred HHHHHHH
Confidence 3344433
No 77
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=38.87 E-value=6.8e+02 Score=29.03 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=19.3
Q ss_pred HHhhHHHHHhH-HHhhhhcchHHHHHHHHHHhhhhhHHhhh
Q 006353 175 LAQVEKDRDMR-REMDRKNDTVYQRKIAEALDNHLTAVQRD 214 (649)
Q Consensus 175 ~~~~ek~~~~r-~E~~r~~~~~~qr~iae~~d~~~~~~~r~ 214 (649)
|.+..|..++| -||.=+-+.+.|-+.-+.|-+...+-+|-
T Consensus 314 iikkAkdddakV~EiaFI~TLea~NKRhdlLaK~~e~Eekl 354 (672)
T KOG4722|consen 314 IIKKAKDDDAKVMEIAFIATLEADNKRHDLLAKDAEVEEKL 354 (672)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHH
Confidence 33333333444 45544555555655555555555444433
No 78
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=38.50 E-value=4.1e+02 Score=26.39 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=9.4
Q ss_pred HhHHHhhhhcchHHHHHHHH
Q 006353 183 DMRREMDRKNDTVYQRKIAE 202 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae 202 (649)
+.|+.|+..+..+..+.-..
T Consensus 43 e~r~~me~~v~~ele~ek~~ 62 (149)
T PF15346_consen 43 EERKKMEKQVAEELEREKEE 62 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444444443
No 79
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=38.27 E-value=1.3e+02 Score=27.23 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006353 235 AKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALE 271 (649)
Q Consensus 235 a~~ke~~~~e~~~r~~~~~~~~ea~~~a~~~~~~a~e 271 (649)
.+.|-+|.|-+++-.+|||.+.|--++.-|.++-|.+
T Consensus 46 EkKkAKAeqrA~EfEqRakehqErDEkElEERrKALe 82 (86)
T PF15437_consen 46 EKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALE 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444446666777777777777655555454444443
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.40 E-value=6.9e+02 Score=28.72 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006353 236 KRKERALQEEKIRQEKVKAEAE 257 (649)
Q Consensus 236 ~~ke~~~~e~~~r~~~~~~~~e 257 (649)
+.+|.+..+...+++-++++++
T Consensus 225 ~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 225 KLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3344455566666666666644
No 81
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=36.95 E-value=1.4e+02 Score=32.23 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=10.4
Q ss_pred ccccceecccccccCCC
Q 006353 97 VAVKRFTCDALYLSESD 113 (649)
Q Consensus 97 ~~~~~f~~~~~~l~~~~ 113 (649)
..|..|.+ |++||-.
T Consensus 187 ~~~~~l~~--i~~TDq~ 201 (321)
T PF07946_consen 187 KAGDYLEY--IHFTDQP 201 (321)
T ss_pred hhhhheeE--EEEECCC
Confidence 35777777 8888653
No 82
>PRK12705 hypothetical protein; Provisional
Probab=36.00 E-value=7.8e+02 Score=28.90 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.1
Q ss_pred hhhhhhcc
Q 006353 288 NSKRITAG 295 (649)
Q Consensus 288 ~~~~~~~~ 295 (649)
.+++.++.
T Consensus 185 aiqr~a~~ 192 (508)
T PRK12705 185 AMQRIASE 192 (508)
T ss_pred HHHHhccc
Confidence 34443333
No 83
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.66 E-value=4.4e+02 Score=25.90 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.7
Q ss_pred chHHHHHHHH
Q 006353 193 DTVYQRKIAE 202 (649)
Q Consensus 193 ~~~~qr~iae 202 (649)
..+|+..+.+
T Consensus 76 ~~e~e~~L~~ 85 (167)
T PRK08475 76 KEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 84
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.62 E-value=5.5e+02 Score=26.99 Aligned_cols=21 Identities=43% Similarity=0.476 Sum_probs=13.2
Q ss_pred HHHHH-HHHHHHHHHHHhhccc
Q 006353 341 IEQKR-LQKLKELDEENQSLKL 361 (649)
Q Consensus 341 ~~~~r-hk~LKelr~~~~~lks 361 (649)
.-+.| .+.|+.|+..+..++-
T Consensus 182 EKnk~lq~QL~~L~~EL~~~kd 203 (246)
T PF00769_consen 182 EKNKRLQEQLKELKSELEQLKD 203 (246)
T ss_dssp HH-HHHHHHHHHHHHHHHTTB-
T ss_pred HhhHHHHHHHHHHHHHHHHHhh
Confidence 33444 5688888888877664
No 85
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=35.08 E-value=3.8e+02 Score=29.53 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006353 242 LQEEKIRQEKVKAEAEA 258 (649)
Q Consensus 242 ~~e~~~r~~~~~~~~ea 258 (649)
+||...+..+++++++|
T Consensus 230 ere~~a~~~~aege~~a 246 (334)
T PRK11029 230 EREAVARRHRSQGQEEA 246 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333344443
No 86
>PTZ00491 major vault protein; Provisional
Probab=34.67 E-value=1e+03 Score=29.83 Aligned_cols=8 Identities=25% Similarity=0.680 Sum_probs=4.7
Q ss_pred HhHHHhhh
Q 006353 183 DMRREMDR 190 (649)
Q Consensus 183 ~~r~E~~r 190 (649)
++|-++||
T Consensus 678 ea~g~Ler 685 (850)
T PTZ00491 678 EARGRLER 685 (850)
T ss_pred HhhchhHH
Confidence 56655664
No 87
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.51 E-value=37 Score=38.79 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHHHH--HhccCCCCcccccc
Q 006353 21 PEPDWSFDALLSELNSLET--RLNASSKPVPFTKT 53 (649)
Q Consensus 21 p~p~w~~~~~~~e~~~~~~--~~~~~~~~~p~~~~ 53 (649)
|.|.|||++-...--++-+ +-+++++|+|++-+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQ 249 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQ 249 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhc
Confidence 9999999998877666533 56788899999655
No 88
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=34.15 E-value=4.8e+02 Score=25.91 Aligned_cols=36 Identities=42% Similarity=0.488 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006353 229 DAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAK 266 (649)
Q Consensus 229 ~~a~~ea~~ke~~~~e~~~r~~~~~~~~ea~~~a~~~~ 266 (649)
..+.++++++ ...+-+.+++-.++-++-+.+.++|+
T Consensus 61 ~~~l~e~r~k--eEeer~~~eELe~ileen~rkvEEAQ 96 (149)
T PF15346_consen 61 EEALEEARRK--EEEERKKREELEKILEENRRKVEEAQ 96 (149)
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666 23333333333345555555555555
No 89
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=33.76 E-value=5e+02 Score=25.99 Aligned_cols=9 Identities=33% Similarity=0.220 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 006353 153 IRNLISTLE 161 (649)
Q Consensus 153 ~r~~~~~le 161 (649)
-+.+..++|
T Consensus 50 e~rR~kq~E 58 (157)
T PF15236_consen 50 ERRRQKQLE 58 (157)
T ss_pred HHHHHHHHH
Confidence 355555555
No 90
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=33.74 E-value=2.4e+02 Score=33.14 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=16.3
Q ss_pred HHHHHHhccc-ceeeccccccccccccccHHHHHHHcCcc
Q 006353 448 DILLGEFHRA-CIYTVPKHIVFSEAAFESEEAYYKTIGYR 486 (649)
Q Consensus 448 DILLArf~kk-CP~lVP~~~~~~k~~~qTeEey~K~mGYR 486 (649)
..|++.|.+. |-|---|++. .. .++-++..||-
T Consensus 615 n~FliLfrds~cqfralyT~~-----~E-Teei~kl~gmg 648 (708)
T KOG3654|consen 615 NHFLILFRDSGCQFRALYTYM-----PE-TEEIRKLTGMG 648 (708)
T ss_pred hhhhhhhhhccceeecccccC-----cc-HHHHhhhhccC
Confidence 3455556443 4444444332 12 35666777773
No 91
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=8.5e+02 Score=28.57 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhhhcc-------CCchhHHHHHHHHHHHHhcccccCCCcc
Q 006353 554 LQLAGFALFKKYKSQFRKILDNIYDN----FLNALKAR-------EDSKLNLVIAEIQYYIEDKKFLEEPEGR 615 (649)
Q Consensus 554 LevAG~~Ll~~YG~QF~KLL~lI~~d----f~p~L~~~-------~~p~~~~~v~rLe~~L~dk~~l~ePEG~ 615 (649)
...+=+.|+=.-|.|-.+++-++..+ |-..++++ .-||...-...|..|++....-+.++|.
T Consensus 468 qRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~ 540 (630)
T KOG0742|consen 468 QRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGK 540 (630)
T ss_pred HHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCC
Confidence 34444455555567777766554332 22223332 2256666666777777765555555554
No 92
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=31.74 E-value=8.1e+02 Score=28.46 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.4
Q ss_pred ChHHHH-HHHHHHHHHhhh
Q 006353 404 CPQSIS-LATFSKKVVSRC 421 (649)
Q Consensus 404 lP~~~~-Ln~lAKaIVsQa 421 (649)
.|+.|. |-+++=.|++-|
T Consensus 536 eevehlSle~~~idi~~e~ 554 (672)
T KOG4722|consen 536 EEVEHLSLEHLAIDICSEC 554 (672)
T ss_pred cccccccHHhhhhHHHHhc
Confidence 344443 555554444444
No 93
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=31.20 E-value=5.2e+02 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=6.5
Q ss_pred cchHHHHHHHHHH
Q 006353 192 NDTVYQRKIAEAL 204 (649)
Q Consensus 192 ~~~~~qr~iae~~ 204 (649)
+-.+|+.+++++.
T Consensus 71 ~~~e~e~~l~~a~ 83 (173)
T PRK13453 71 LEEENKQKLKETQ 83 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 94
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=31.04 E-value=80 Score=36.10 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=15.6
Q ss_pred CCCCcchHHHHHHHHhCCCCCc
Q 006353 522 NAHGLKEGWAWLARFLNALPAN 543 (649)
Q Consensus 522 nP~gi~~~WkWLARILN~~P~~ 543 (649)
+-+|+-.+|+.+..|+|..+.+
T Consensus 413 v~~gl~altr~~s~f~~~f~wp 434 (506)
T KOG2507|consen 413 VSGGLFALTRRVSSFANPFSWP 434 (506)
T ss_pred cchhHHHHHHHHHHHhccCCCC
Confidence 3467777888888888875543
No 95
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=30.07 E-value=1.3e+03 Score=29.69 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHH
Q 006353 150 KEEIRNLISTLETQL 164 (649)
Q Consensus 150 ~e~~r~~~~~le~~~ 164 (649)
.++++.++..++.++
T Consensus 602 ee~L~~~l~~~~~~l 616 (1201)
T PF12128_consen 602 EEELRERLEQAEDQL 616 (1201)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345566666555444
No 96
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.95 E-value=5.5e+02 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=6.5
Q ss_pred cchHHHHHHHHHH
Q 006353 192 NDTVYQRKIAEAL 204 (649)
Q Consensus 192 ~~~~~qr~iae~~ 204 (649)
...+|+.+++++.
T Consensus 80 ~l~e~e~~L~~A~ 92 (184)
T PRK13455 80 LLASYERKQREVQ 92 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555543
No 97
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.50 E-value=7.9e+02 Score=30.19 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=6.7
Q ss_pred HHHHHHhhhhhHHhhhHH
Q 006353 199 KIAEALDNHLTAVQRDHE 216 (649)
Q Consensus 199 ~iae~~d~~~~~~~r~~e 216 (649)
.||+.+-=--..+.|+++
T Consensus 492 ~iA~~~Glp~~ii~~A~~ 509 (782)
T PRK00409 492 EIAKRLGLPENIIEEAKK 509 (782)
T ss_pred HHHHHhCcCHHHHHHHHH
Confidence 344333333333334333
No 98
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=29.49 E-value=4.9e+02 Score=26.80 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.5
Q ss_pred ceEEEe
Q 006353 70 AFVIRV 75 (649)
Q Consensus 70 ~fv~r~ 75 (649)
+|+.+|
T Consensus 31 P~i~~v 36 (261)
T TIGR01933 31 PFIEEV 36 (261)
T ss_pred CCceEE
Confidence 444333
No 99
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=29.35 E-value=34 Score=29.51 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.2
Q ss_pred ccCCCCCCCHHHHHHH
Q 006353 18 AIDPEPDWSFDALLSE 33 (649)
Q Consensus 18 ~~dp~p~w~~~~~~~e 33 (649)
.-||+|.||.+++++=
T Consensus 16 L~DP~p~~spe~V~df 31 (66)
T TIGR03738 16 LADPSPAMSPEQVRDF 31 (66)
T ss_pred cCCCCCCCCHHHHHHH
Confidence 3599999999998763
No 100
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=29.00 E-value=1.7e+03 Score=30.66 Aligned_cols=236 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHhhhhccccchHHHHHHHHHHHHHHh------hhhHHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHh
Q 006353 139 VELTHQHQLGVKEEIRNLISTLETQLI------SENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQ 212 (649)
Q Consensus 139 ~e~~~~~~~~~~e~~r~~~~~le~~~~------~e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~~ 212 (649)
+|+.-+|.-+.++|...+++.+...+. ++.+++...+.-..+..+.|-+.= ......=|..-+.+.++.-.+.
T Consensus 1616 lE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l-~~E~eeL~~~l~~~~Rarr~aE 1694 (1930)
T KOG0161|consen 1616 LEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAAL-QAELEELREKLEALERARRQAE 1694 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006353 213 RDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAE---EAKRAALEAEKRAAKEAAEREAAENS 289 (649)
Q Consensus 213 r~~e~~~q~~er~~r~~~a~~ea~~ke~~~~e~~~r~~~~~~~~ea~~~a~---~~~~~a~ea~~~~~~~~~e~e~~~~~ 289 (649)
++....+-..-.....--+.-..++| =|+++-+-..-.+.+..+-.. .+||+.++++.=+..=..|++....+
T Consensus 1695 ~e~~E~~e~i~~~~~~~s~l~~~Krk----lE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~l 1770 (1930)
T KOG0161|consen 1695 LELEELAERVNELNAQNSSLTAEKRK----LEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKL 1770 (1930)
T ss_pred HHHHHHHHHHHHHhhcccchhhHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred hhhhccccCCCCCCCCCCCcccccccccCCCCCCc--chhhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 006353 290 KRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDG--TKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDF 367 (649)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~k~~~~~~a~~sal~~~~~rhk~LKelr~~~~~lks~lkk~~ 367 (649)
.+..-.--..+. +-+.-+..+..++.+... +.|+.+-++.-++.|+.+..||.. ..+.+
T Consensus 1771 e~~k~~LE~~~k-----dLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e--------------~~k~~ 1831 (1930)
T KOG0161|consen 1771 ERLKKSLERQVK-----DLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAE--------------AIKGL 1831 (1930)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHH--------------HhHHH
Q ss_pred cccccccccccccccCchhhHHHHHHHHHHH
Q 006353 368 SGYEKDISRLIRQIRGLKDNVRTKASELVKI 398 (649)
Q Consensus 368 ~~~KRqI~~kIGQLSns~~QI~~Is~eL~~l 398 (649)
.+..|.|.----|+.....++......+-++
T Consensus 1832 rk~er~vkEl~~q~eed~k~~~~~q~~~dkl 1862 (1930)
T KOG0161|consen 1832 RKKERRVKELQFQVEEDKKNIERLQDLVDKL 1862 (1930)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
No 101
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=2.4e+02 Score=32.23 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=6.2
Q ss_pred cCCccccccccccc
Q 006353 121 LGGESYLMDEVGLA 134 (649)
Q Consensus 121 ~~~~~~l~~~~~~~ 134 (649)
..+-| ++++.|.-
T Consensus 304 Q~sgP-~~~~E~~t 316 (440)
T KOG2357|consen 304 QFSGP-IDQEEGET 316 (440)
T ss_pred CCCCC-cccccccc
Confidence 33444 55555544
No 102
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=28.68 E-value=6.3e+02 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.200 Sum_probs=6.3
Q ss_pred CCCCccccccCCcc
Q 006353 112 SDDSDDDVALGGES 125 (649)
Q Consensus 112 ~~~~~~~~~~~~~~ 125 (649)
+|||+++...-.-|
T Consensus 26 ~SdSEde~~~~lKP 39 (276)
T PF06991_consen 26 SSDSEDEEEPLLKP 39 (276)
T ss_pred cccccccccccccc
Confidence 34444444344445
No 103
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=28.55 E-value=53 Score=40.67 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=29.3
Q ss_pred cccccceecccccccCC-CCCccccccCCccccccccccchhhhHHhhhhcccc
Q 006353 96 LVAVKRFTCDALYLSES-DDSDDDVALGGESYLMDEVGLADGALVELTHQHQLG 148 (649)
Q Consensus 96 ~~~~~~f~~~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~l~e~~~~~~~~ 148 (649)
..+|.-|--++...-|+ +|+|++++.+.++-+++..-..+.++.+...++-+.
T Consensus 61 ~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie~~e~~~~d~~~~~R~~ 114 (1024)
T KOG1999|consen 61 KESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIEESEEDLPDERGDRRLR 114 (1024)
T ss_pred ccccccccccccccccccccccchhccCcchhhcccchhcccccccccccccch
Confidence 45788888877765544 233333344445555665555565665555544433
No 104
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=28.32 E-value=2.5e+02 Score=34.33 Aligned_cols=170 Identities=13% Similarity=0.107 Sum_probs=85.8
Q ss_pred ccccccccccccccccccccCchhhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHh
Q 006353 363 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLC-PQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS 441 (649)
Q Consensus 363 lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~ql-P~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~ 441 (649)
-..++..++|+|+-.+|.||.+ .|..|+..|..+-....- .-.-+|..+-..++.+-..-.-..+.-+|.+++.|.
T Consensus 312 ~sE~l~rl~rkv~g~LNKLSda--Ni~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~- 388 (822)
T KOG2141|consen 312 ESEQLQRLRRKVNGSLNKLSDA--NIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLH- 388 (822)
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 4456778999999999999765 577888888777754211 011123333333333333311124445555555443
Q ss_pred hCccHHHHHHHHhcccceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 006353 442 QVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ 521 (649)
Q Consensus 442 ~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~~ 521 (649)
-..+--+=|||+.+..-.+-.++- .++. .+.-.+-|.+|+.|++-+....+
T Consensus 389 --~~vg~eigahf~q~~ve~f~~~~~-------~~~~----------------~~~~~K~~~Nl~~~l~ylynF~i---- 439 (822)
T KOG2141|consen 389 --TMVGNEIGAHFLQTFVEDFLKSYK-------EEEE----------------MDLKDKSLNNIVLFLSYLYNFGI---- 439 (822)
T ss_pred --HHHhhHHHHHHHHHHHHHHHHHHH-------HHHh----------------cccccchhhhHHHHHHHHHHhhc----
Confidence 333455556664433222222211 1110 00114667788877766653221
Q ss_pred CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 006353 522 NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQ 568 (649)
Q Consensus 522 nP~gi~~~WkWLARILN~~P~~~ita~VL~afLevAG~~Ll~~YG~Q 568 (649)
+...-..-.|-.++-. ++.+...+|-.++..||+.|-.-=...
T Consensus 440 --vs~~LiydiI~kl~~~--l~e~~ve~ll~ii~~~G~~LRkDDp~a 482 (822)
T KOG2141|consen 440 --VSCSLIYDIIRKLAEN--LNETNVEALLTIIANCGFSLRKDDPLA 482 (822)
T ss_pred --ccHHHHHHHHHHHHhc--hhhhhHHHHHHHHHHccchhcCCChHH
Confidence 1112222233333322 344566667778999998875544333
No 105
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.93 E-value=6.7e+02 Score=25.66 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=14.4
Q ss_pred HhHHHhhhhcchHHHHHHHHHHhh
Q 006353 183 DMRREMDRKNDTVYQRKIAEALDN 206 (649)
Q Consensus 183 ~~r~E~~r~~~~~~qr~iae~~d~ 206 (649)
..+.|.+ .+..+|+.+++++..+
T Consensus 98 ~~k~eAe-~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 98 RLKQEAD-AAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445555 5667778888776533
No 106
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.82 E-value=5.6e+02 Score=24.71 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=7.4
Q ss_pred hcchHHHHHHHHHH
Q 006353 191 KNDTVYQRKIAEAL 204 (649)
Q Consensus 191 ~~~~~~qr~iae~~ 204 (649)
.+..+|+..++++.
T Consensus 60 ~~~~e~e~~l~~A~ 73 (164)
T PRK14473 60 NAKRDYEAELAKAR 73 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555665543
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.58 E-value=1.2e+03 Score=28.49 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=7.1
Q ss_pred HHHHHhhhhhHHhhhHH
Q 006353 200 IAEALDNHLTAVQRDHE 216 (649)
Q Consensus 200 iae~~d~~~~~~~r~~e 216 (649)
+.++.|+|-.=++|-..
T Consensus 602 ~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 108
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=25.96 E-value=9.8e+02 Score=27.61 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHH
Q 006353 151 EEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAE 202 (649)
Q Consensus 151 e~~r~~~~~le~~~~~e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae 202 (649)
.-...++..+|..+++|.+|...++.. +=--++|++++ .++||..|+
T Consensus 198 ~~~kkq~l~le~~l~eEy~rkm~aL~~-~c~lE~r~k~e----~~~qre~a~ 244 (429)
T PF12297_consen 198 SVFKKQFLGLEKRLQEEYDRKMVALTA-ECNLETRKKME----AQHQREMAE 244 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH----HHHHHHHHH
Confidence 335788999999999999988777653 22336666655 588888774
No 109
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.76 E-value=1.3e+03 Score=28.21 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=8.5
Q ss_pred CchhhHHHHHHHHHHHhc
Q 006353 383 GLKDNVRTKASELVKILN 400 (649)
Q Consensus 383 ns~~QI~~Is~eL~~lL~ 400 (649)
+....++.+...|-+-|.
T Consensus 594 ~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 333444555555555444
No 110
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=25.30 E-value=45 Score=28.62 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.3
Q ss_pred cCCCCCCCHHHHHHHH
Q 006353 19 IDPEPDWSFDALLSEL 34 (649)
Q Consensus 19 ~dp~p~w~~~~~~~e~ 34 (649)
-||.|.||.+++++=.
T Consensus 18 ~DP~p~~spe~V~~~y 33 (65)
T PF14454_consen 18 PDPNPSLSPEEVRDFY 33 (65)
T ss_pred CCCCCCCCHHHHHHHH
Confidence 4899999999997643
No 111
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.63 E-value=1.1e+03 Score=29.01 Aligned_cols=8 Identities=0% Similarity=-0.413 Sum_probs=3.8
Q ss_pred ceeecccc
Q 006353 458 CIYTVPKH 465 (649)
Q Consensus 458 CP~lVP~~ 465 (649)
+|++-.|+
T Consensus 747 ~~~V~~f~ 754 (771)
T TIGR01069 747 HPKVKSFR 754 (771)
T ss_pred Ccceeeec
Confidence 45555443
No 112
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=9.3e+02 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=7.8
Q ss_pred HHHHhhhHHHHHHHHHH
Q 006353 222 EERKIRSDAAYEEAKRK 238 (649)
Q Consensus 222 ~er~~r~~~a~~ea~~k 238 (649)
+.+++|+-.....|+++
T Consensus 119 ~k~~~ks~~~~~~a~~r 135 (290)
T KOG2689|consen 119 EKQRRKSGDEMSAAKRR 135 (290)
T ss_pred HHhhhhcccHHHHHHHH
Confidence 33444444444555544
No 113
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.27 E-value=1.7e+03 Score=29.16 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHH--hhhhHHh
Q 006353 151 EEIRNLISTLETQL--ISENEQS 171 (649)
Q Consensus 151 e~~r~~~~~le~~~--~~e~~~~ 171 (649)
++++..+..++..+ ..++.+.
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~ 255 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQR 255 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655443 3344443
No 114
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=24.18 E-value=25 Score=35.67 Aligned_cols=13 Identities=23% Similarity=0.095 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhcc
Q 006353 348 KLKELDEENQSLK 360 (649)
Q Consensus 348 ~LKelr~~~~~lk 360 (649)
.|..|..|+..-|
T Consensus 100 lL~~Fi~yIK~~K 112 (188)
T PF09756_consen 100 LLQEFINYIKEHK 112 (188)
T ss_dssp HHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHcc
Confidence 5555555555533
No 115
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.67 E-value=1.6e+03 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=12.7
Q ss_pred ccchHHHHHHHHHHHHHH
Q 006353 147 LGVKEEIRNLISTLETQL 164 (649)
Q Consensus 147 ~~~~e~~r~~~~~le~~~ 164 (649)
.+.-+++|+++..|...+
T Consensus 223 skte~eLr~QvrdLtEkL 240 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKL 240 (1243)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 445566899998887544
No 116
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=23.65 E-value=3.9e+02 Score=24.07 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHhCCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006353 532 WLARFLNALPANIY-TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFL 581 (649)
Q Consensus 532 WLARILN~~P~~~i-ta~VL~afLevAG~~Ll~~YG~QF~KLL~lI~~df~ 581 (649)
|+-.+.+.+|...+ -.+|+.+.+..++......|+..|.+++.-+..+..
T Consensus 37 i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~ 87 (121)
T smart00582 37 WEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVL 87 (121)
T ss_pred HHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 45556665444444 577899999988765434444444444444333333
No 117
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.98 E-value=1.2e+03 Score=27.10 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.7
Q ss_pred cccccc
Q 006353 370 YEKDIS 375 (649)
Q Consensus 370 ~KRqI~ 375 (649)
+||.|.
T Consensus 255 ~rreia 260 (514)
T TIGR03319 255 VRREIA 260 (514)
T ss_pred HHHHHH
Confidence 444444
No 118
>PRK12704 phosphodiesterase; Provisional
Probab=22.68 E-value=1.3e+03 Score=27.08 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.3
Q ss_pred HHHHHHhhhhhhccccCC
Q 006353 282 EREAAENSKRITAGVSQD 299 (649)
Q Consensus 282 e~e~~~~~~~~~~~~~~~ 299 (649)
+.+++.-+..|....+..
T Consensus 187 ~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 187 DKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 333334444555555543
No 119
>PLN02316 synthase/transferase
Probab=22.60 E-value=3e+02 Score=34.95 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 006353 499 LSRLKSYMRLYAALIQ 514 (649)
Q Consensus 499 lkRMtGI~rLYAAIiq 514 (649)
..|+.-+++..+.+++
T Consensus 689 ~~RF~~F~~Aale~l~ 704 (1036)
T PLN02316 689 GERFGFFCHAALEFLL 704 (1036)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777766666654
No 120
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.26 E-value=1.4e+03 Score=28.04 Aligned_cols=8 Identities=0% Similarity=-0.404 Sum_probs=4.3
Q ss_pred ceeecccc
Q 006353 458 CIYTVPKH 465 (649)
Q Consensus 458 CP~lVP~~ 465 (649)
.|++..|+
T Consensus 758 ~~~V~~f~ 765 (782)
T PRK00409 758 HPSVKSFR 765 (782)
T ss_pred CCceeeee
Confidence 45555554
No 121
>PLN02316 synthase/transferase
Probab=22.22 E-value=3.1e+02 Score=34.81 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006353 503 KSYMRLY 509 (649)
Q Consensus 503 tGI~rLY 509 (649)
+|++.+|
T Consensus 720 talva~l 726 (1036)
T PLN02316 720 SAPVAWL 726 (1036)
T ss_pred HHHHHHH
Confidence 3444333
No 122
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=21.67 E-value=9.4e+02 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=15.7
Q ss_pred HHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHH
Q 006353 179 EKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHE 216 (649)
Q Consensus 179 ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~~r~~e 216 (649)
+|...--.||...+.+--|..+- =|.+.+.++.+
T Consensus 128 ~k~~~Re~~iak~m~K~pq~~a~----~~a~~~k~e~~ 161 (225)
T KOG4848|consen 128 EKFTFREAEIAKNMKKYPQTLAK----YEASLVKQEQE 161 (225)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHhHHH
Confidence 33333334566556555555432 24444444443
No 123
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=21.31 E-value=7.9e+02 Score=24.14 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006353 224 RKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAE--AKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 291 (649)
Q Consensus 224 r~~r~~~a~~ea~~ke~~~~e~~~r~~~~~~~~e--a~~~a~~~~~~a~ea~~~~~~~~~e~e~~~~~~~ 291 (649)
.+|++++..+-.+-.+.|.++..+--+.|+.+++ ..+..+++++.+.....++...+...-+......
T Consensus 8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~ 77 (188)
T PRK02292 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNA 77 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.86 E-value=2e+03 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhhHHhHHHHHhhHHHHHhH
Q 006353 153 IRNLISTLETQLISENEQSNSALAQVEKDRDMR 185 (649)
Q Consensus 153 ~r~~~~~le~~~~~e~~~~~~~~~~~ek~~~~r 185 (649)
...++..+|.++ .+.+....++.....|+..+
T Consensus 302 ~~~~~~~le~~~-~~l~~~~~~l~~~~a~~~~~ 333 (1353)
T TIGR02680 302 LDARTEALEREA-DALRTRLEALQGSPAYQDAE 333 (1353)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHH
Confidence 455555565443 23334455555555555433
No 125
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.37 E-value=1.2e+03 Score=26.01 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=21.2
Q ss_pred ccccccccchhhhHHhhhh-ccccc--hHHHHHHHHHHHHHH
Q 006353 126 YLMDEVGLADGALVELTHQ-HQLGV--KEEIRNLISTLETQL 164 (649)
Q Consensus 126 ~l~~~~~~~~~~l~e~~~~-~~~~~--~e~~r~~~~~le~~~ 164 (649)
-|..++..++ --+|++|= .+||| ..+.+.|++-||..+
T Consensus 186 i~es~vd~~e-WklEvERV~PqLKv~~~~d~kDWR~hleqm~ 226 (359)
T PF10498_consen 186 IIESKVDPAE-WKLEVERVLPQLKVTIRADAKDWRSHLEQMK 226 (359)
T ss_pred cccccCCHHH-HHHHHHHHhhhheeeccCCcchHHHHHHHHH
Confidence 3444444443 33477763 45665 555677777777443
Done!