Query 006353
Match_columns 649
No_of_seqs 165 out of 210
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 3.3E-64 1.1E-68 520.6 23.4 265 332-606 5-284 (297)
2 2i1j_A Moesin; FERM, coiled-co 87.0 1.5 5.2E-05 49.1 8.8 22 344-365 515-536 (575)
3 3rk6_A Polyadenylate-binding p 86.4 7.8 0.00027 38.6 12.8 167 369-565 18-195 (234)
4 1hu3_A EIF4GII; heat repeat, t 85.1 7.2 0.00025 39.0 11.9 219 366-612 7-244 (260)
5 2zuo_A MVP, major vault protei 85.1 18 0.00063 42.4 16.4 15 224-238 691-705 (861)
6 2vso_E Eukaryotic initiation f 81.7 27 0.00093 35.3 14.6 168 366-565 32-232 (284)
7 3vkg_A Dynein heavy chain, cyt 75.4 63 0.0022 43.4 18.4 14 176-189 1924-1937(3245)
8 2zuo_A MVP, major vault protei 71.6 1.7E+02 0.0057 34.7 18.9 13 99-111 625-637 (861)
9 3oja_B Anopheles plasmodium-re 59.7 1.9E+02 0.0066 31.2 16.1 19 169-187 473-491 (597)
10 3v6i_B V-type ATP synthase, su 55.6 1.1E+02 0.0039 27.2 13.3 18 246-263 61-78 (105)
11 3iox_A AGI/II, PA; alpha helix 52.0 1.9E+02 0.0064 32.2 13.9 12 303-314 127-138 (497)
12 2i1j_A Moesin; FERM, coiled-co 49.1 23 0.0008 39.6 6.5 34 153-191 303-336 (575)
13 3cay_A LPD-12; alpha helix, ac 47.6 17 0.00057 24.7 3.0 11 267-277 12-22 (27)
14 1deq_A Fibrinogen (alpha chain 30.1 1.1E+02 0.0039 32.9 7.7 61 143-204 119-188 (390)
15 3bbo_Z Ribosomal protein L29; 28.5 14 0.0005 35.7 0.6 63 149-211 74-137 (173)
16 1i84_S Smooth muscle myosin he 22.0 3.4E+02 0.012 32.8 10.7 198 163-398 861-1058(1184)
17 1v9d_A Diaphanous protein homo 21.8 82 0.0028 32.6 4.8 7 27-33 106-112 (340)
18 3vkg_A Dynein heavy chain, cyt 20.4 8.3E+02 0.029 33.3 14.4 24 362-385 2060-2086(3245)
19 2b5u_A Colicin E3; high resolu 20.2 5.5E+02 0.019 28.7 10.8 8 122-129 279-287 (551)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=100.00 E-value=3.3e-64 Score=520.63 Aligned_cols=265 Identities=16% Similarity=0.264 Sum_probs=232.8
Q ss_pred hhccHHHHHHHHHHHHHHHHHHH-HHhhccccccccccccccccccccccccCchhhHHHHHHHHHHHhcCC---CChHH
Q 006353 332 VRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQS 407 (649)
Q Consensus 332 ~~a~~sal~~~~~rhk~LKelr~-~~~~lks~lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~---qlP~~ 407 (649)
+.+.+..+..|+++++.||..-. .++..++++|+.++++||+||++|||||+|.+||++|+++|.++|+++ ++|+.
T Consensus 5 ~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~ 84 (297)
T 3pev_B 5 FDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYH 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHH
Confidence 66677788999999998887543 333346789999999999999999999999999999999999999864 56788
Q ss_pred HHHHHHHHHHHhhhcCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhcccceeeccccccccccccccHHHHHHHcC
Q 006353 408 ISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIG 484 (649)
Q Consensus 408 ~~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mG 484 (649)
|+||+|||+||+|||++ ++++|||+|.|++.||..||+|+|+||||||++|||+||||++ .+| ++|+++||
T Consensus 85 ~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~t-eegr~~mG 158 (297)
T 3pev_B 85 WILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----IDT-EKGRQNMG 158 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CSS-HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----ccc-HHHHHHcC
Confidence 99999999999999995 6789999999999999999999999999999999999999974 234 67888999
Q ss_pred ccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCC--ccchHHHHHHHHHH
Q 006353 485 YRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPA--NIYTAVALNAFLQL 556 (649)
Q Consensus 485 YR~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~-----~~~nP~gi~~~WkWLARILN~~P~--~~ita~VL~afLev 556 (649)
|+. +||+||++++|++||+||++|||||+|+++| +.+||||++++|+|||||||++|. ..+|++||++||++
T Consensus 159 ~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~Le~ 238 (297)
T 3pev_B 159 WKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLNLITNTHFVILGSWWDA 238 (297)
T ss_dssp CCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHHHH
T ss_pred CeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHHhhcccHHHHHHHHHHH
Confidence 976 6899999999999999999999999999854 467999999999999999999654 23345599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhc
Q 006353 557 AGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDK 606 (649)
Q Consensus 557 AG~~Ll~~YG~QF~KLL~lI~~df~p~L~~~~~p~~~~~v~rLe~~L~dk 606 (649)
||++|+++||+||.|||++|.++|+|++.++..++ ++||+.+++++
T Consensus 239 ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~----a~RL~~l~e~~ 284 (297)
T 3pev_B 239 AAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVG----AARLRILLEAW 284 (297)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc----HHHHHHHHHHH
Confidence 99999999999999999999999999999876544 56777766654
No 2
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.00 E-value=1.5 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q 006353 344 KRLQKLKELDEENQSLKLSSNE 365 (649)
Q Consensus 344 ~rhk~LKelr~~~~~lks~lkk 365 (649)
+..+.|+.|+..+..++...|+
T Consensus 515 ~lq~qL~~L~~el~~~r~~~k~ 536 (575)
T 2i1j_A 515 RLHNQLKALKQDLARSCDETKE 536 (575)
T ss_dssp HHHHHHHHHHHHHHTTBCGGGC
T ss_pred HHHHHHHHHHHHHHHHhhhhhc
Confidence 3466889988888887754444
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=86.44 E-value=7.8 Score=38.58 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=103.2
Q ss_pred ccccccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhC---cc
Q 006353 369 GYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---PQ 445 (649)
Q Consensus 369 ~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~---Pe 445 (649)
.+.|+|+-.+|.||.+.+....++.+|..+++.. ....-.|..+++-|+.++-.+ |..+..+|.++..|.... |.
T Consensus 18 ~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~-~~~~~~L~~vi~lIfekAi~e-p~fs~~YA~LC~~l~~~l~~~~~ 95 (234)
T 3rk6_A 18 TLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQELVELIYQQATSI-PNFSYMGARLCNYLSHHLTISPQ 95 (234)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSS-TTCHHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCCCCc
Confidence 5678888889999977777888888888876521 011234777788888877653 457888899998886543 43
Q ss_pred ---HHHHHHHHhcccceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhc-CCCC-C
Q 006353 446 ---VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQT-EIPG-V 520 (649)
Q Consensus 446 ---f~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~~dG~~Ese~~YlkRMtGI~rLYAAIiqt-~~~~-~ 520 (649)
|..+|+.+.+.. |- +. ... ... +...-.|+-|.+++-+-+... ...+ .
T Consensus 96 ~~~Fr~lLL~rcQ~e------Fe----~~-----~~~------~~~------d~~~k~r~lg~i~FIgELf~~l~~~~~~ 148 (234)
T 3rk6_A 96 SGNFRQLLLQRCRTE------YE----VK-----DQA------AKG------DEVTRKRFHAFVLFLGELYLNLEIKGTN 148 (234)
T ss_dssp TCCHHHHHHHHHHHH------HT----TH-----HHH------TSS------CHHHHHHHHHHHHHHHHHHHHCCEECTT
T ss_pred hhHHHHHHHHHHHHH------HH----hh-----HHh------hhc------cHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 788888777664 11 00 000 011 124557999999999998863 2211 0
Q ss_pred CCCCCcchHHHHHHHHhCC---CCCccchHHHHHHHHHHHHHHHHHHH
Q 006353 521 QNAHGLKEGWAWLARFLNA---LPANIYTAVALNAFLQLAGFALFKKY 565 (649)
Q Consensus 521 ~nP~gi~~~WkWLARILN~---~P~~~ita~VL~afLevAG~~Ll~~Y 565 (649)
..+....-.=..+-.+|+. .| .+-...++..+|..+|..|-..+
T Consensus 149 ~~~l~e~I~~~ci~~Ll~~l~~~p-~ee~vE~l~~lL~tvG~~Ld~~~ 195 (234)
T 3rk6_A 149 GQVTRADILQVGLRELLNALFSNP-MDDNLICAVKLLKLTGSVLEDAW 195 (234)
T ss_dssp SSEECCHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHhhcc
Confidence 1122221222233444432 24 44567777789999999886654
No 4
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=85.12 E-value=7.2 Score=39.01 Aligned_cols=219 Identities=10% Similarity=0.075 Sum_probs=111.5
Q ss_pred cccccccccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHh-hCc
Q 006353 366 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS-QVP 444 (649)
Q Consensus 366 ~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~-~~P 444 (649)
.+..++|+|+-.+|.||.+ .+..|+.+|..+-. ..+ -.+.-++..|+.++-.+ |..+.-+|.++..|.. ..|
T Consensus 7 ~~~~l~r~v~giLNKLT~~--nf~~i~~ql~~~~i--~~~--~~l~~vi~~if~kA~~e-p~f~~~YA~Lc~~L~~~~~p 79 (260)
T 1hu3_A 7 KTQELFRKVRSILNKLTPQ--MFNQLMKQVSGLTV--DTE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVP 79 (260)
T ss_dssp HHHHHHHHHHHHHTCSSCC--CHHHHHHHHTTCCC--CSH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHhcC--CCH--HHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhCC
Confidence 4567889999999999954 56677766654321 122 23555566666655543 3456667888887765 355
Q ss_pred c---------HHHHHHHHhcccceeecccccc----cccccc---ccHHHHHHHcCcccCCCcc-cchhhHHHHHHHHHH
Q 006353 445 Q---------VMDILLGEFHRACIYTVPKHIV----FSEAAF---ESEEAYYKTIGYREEDGKI-ESLENYLSRLKSYMR 507 (649)
Q Consensus 445 e---------f~DILLArf~kkCP~lVP~~~~----~~k~~~---qTeEey~K~mGYR~~dG~~-Ese~~YlkRMtGI~r 507 (649)
. |+.+|+-+++... --++-.. ...... .+.++ .+.+. ..+ +.....-.|+-|.++
T Consensus 80 ~~~~~~~~~~Fr~~LL~rcq~eF--e~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~-----~e~ee~~~~~k~r~lg~i~ 151 (260)
T 1hu3_A 80 MADKPGNTVNFRKLLLNRCQKEF--EKDKADDDVFEKKQKELEAASAPEE-RTRLH-----DELEEAKDKARRRSIGNIK 151 (260)
T ss_dssp ---------CHHHHHHHHHHHHH--HHHTC------------------------------------CCSSHHHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHH--hcccchhhhHHHHhhhhcccCCHHH-HHHhh-----hHHHHHHHHHHHHHHhHHH
Confidence 4 5566655543321 1111000 000000 00000 00000 000 111244578999999
Q ss_pred HHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 006353 508 LYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAR 587 (649)
Q Consensus 508 LYAAIiqt~~~~~~nP~gi~~~WkWLARILN~~P~~~ita~VL~afLevAG~~Ll~~YG~QF~KLL~lI~~df~p~L~~~ 587 (649)
+-+-+.... -.+..-....|-.+|.. | +.-..-+|..+|.++|..|-.--+. ..|..+...+-..+...
T Consensus 152 FIgeLy~~~------~l~~~i~~~~l~~Ll~~-~-~e~~iE~l~~lL~tvG~~L~~~~~~---~~l~~~f~~l~~~~~~~ 220 (260)
T 1hu3_A 152 FIGELFKLK------MLTEAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDFEKAK---PRMDQYFNQMEKIVKER 220 (260)
T ss_dssp HHHHHHTTT------CSCHHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCCTTTH---HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcC------CCCHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHHHhCC
Confidence 999998643 23333455677777775 4 4456788889999999998652222 22322222222222222
Q ss_pred CCchhHHHHHHHHHHHHhc-ccccCC
Q 006353 588 EDSKLNLVIAEIQYYIEDK-KFLEEP 612 (649)
Q Consensus 588 ~~p~~~~~v~rLe~~L~dk-~~l~eP 612 (649)
. -..+..--|++.++-+ ..+.++
T Consensus 221 ~--ls~Rirfmi~~l~dLR~~~W~~~ 244 (260)
T 1hu3_A 221 K--TSSRIRFMLQDVIDLRLCNWVSR 244 (260)
T ss_dssp S--SCHHHHHHHHHHHHHHHTTTCC-
T ss_pred C--CCHHHHHHHHHHHHHHHcCCCCC
Confidence 2 1234555577777643 334443
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=85.11 E-value=18 Score=42.43 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=6.3
Q ss_pred HHhhhHHHHHHHHHH
Q 006353 224 RKIRSDAAYEEAKRK 238 (649)
Q Consensus 224 r~~r~~~a~~ea~~k 238 (649)
.+|..+++.|++|++
T Consensus 691 qki~d~a~aE~~r~~ 705 (861)
T 2zuo_A 691 QKILDQSEAEKARKE 705 (861)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 6
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=81.65 E-value=27 Score=35.28 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=95.8
Q ss_pred cccccccccccccccccCchhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCc
Q 006353 366 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPL-CPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP 444 (649)
Q Consensus 366 ~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~q-lP~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~P 444 (649)
.+..++|+|+-.+|.||.. .+..|+.+|..+-.... ....-.|.-+++-|+.++-.+ |..+.-+|.++..|....|
T Consensus 32 ~~e~l~r~vkgiLNKLT~~--nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~e-p~fs~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 32 DKDEVERKMKSLLNKLTLE--MFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDE-PHWSSMYAQLCGKVVKELN 108 (284)
T ss_dssp CHHHHHHHHHHHHHSCCST--THHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 4667899999999999754 57788888877653210 011112444455555555443 3466778888888776544
Q ss_pred -c--------------HHHHHHHHhcccceeeccccccccccccccHHHHHHHcCccc-----CCC-ccc----ch----
Q 006353 445 -Q--------------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-----EDG-KIE----SL---- 495 (649)
Q Consensus 445 -e--------------f~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~-----~dG-~~E----se---- 495 (649)
+ |..+|+-+++.. |.+ +|.. .+| ..| ++
T Consensus 109 ~~i~~e~~~~k~g~~~Fr~~LL~rcq~e---------------------Fe~--~~~~~~~~~~~~~~~e~e~~~~e~~~ 165 (284)
T 2vso_E 109 PDITDETNEGKTGPKLVLHYLVARCHAE---------------------FDK--GWTDKLPTNEDGTPLEPEMMSEEYYA 165 (284)
T ss_dssp TTCCBCC---CCTHHHHHHHHHHHHHHH---------------------HHH--CCCSSCC------------CCTTHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHH---------------------Hhh--hhhhhhhhccccchhhhhhhhhHHHH
Confidence 2 334444433222 111 1110 011 111 11
Q ss_pred -hhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCC--CCccchHHHHHHHHHHHHHHHHHHH
Q 006353 496 -ENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNAL--PANIYTAVALNAFLQLAGFALFKKY 565 (649)
Q Consensus 496 -~~YlkRMtGI~rLYAAIiqt~~~~~~nP~gi~~~WkWLARILN~~--P~~~ita~VL~afLevAG~~Ll~~Y 565 (649)
...-.|+-|.+++-+-+..... .+..-....+-.+|+.. .+..-..-+|..+|.++|..|-..-
T Consensus 166 ~~~~k~r~lg~i~FIgeLyk~~~------l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~ 232 (284)
T 2vso_E 166 AASAKRRGLGLVRFIGFLYRLNL------LTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDS 232 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhHHHHHHHHHhccC------CcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 2334689999999999986432 23334556677777520 1345567888889999999986543
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.36 E-value=63 Score=43.44 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=7.5
Q ss_pred HhhHHHHHhHHHhh
Q 006353 176 AQVEKDRDMRREMD 189 (649)
Q Consensus 176 ~~~ek~~~~r~E~~ 189 (649)
.+++|=.+|...++
T Consensus 1924 ~GL~KL~et~~~V~ 1937 (3245)
T 3vkg_A 1924 IGLKKLRDTEAQVK 1937 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554444
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=71.58 E-value=1.7e+02 Score=34.65 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=7.6
Q ss_pred ccceecccccccC
Q 006353 99 VKRFTCDALYLSE 111 (649)
Q Consensus 99 ~~~f~~~~~~l~~ 111 (649)
+-+|..+.|.++.
T Consensus 625 ~~~F~~N~lvits 637 (861)
T 2zuo_A 625 QAVFPQNGLVVSS 637 (861)
T ss_dssp CEECTTTCEEEEE
T ss_pred ceEEccCCeEEEE
Confidence 4556666666553
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.73 E-value=1.9e+02 Score=31.17 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=8.2
Q ss_pred HHhHHHHHhhHHHHHhHHH
Q 006353 169 EQSNSALAQVEKDRDMRRE 187 (649)
Q Consensus 169 ~~~~~~~~~~ek~~~~r~E 187 (649)
+.....+...+++.+.+++
T Consensus 473 ~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3334444444444444433
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=55.61 E-value=1.1e+02 Score=27.25 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006353 246 KIRQEKVKAEAEAKLRAE 263 (649)
Q Consensus 246 ~~r~~~~~~~~ea~~~a~ 263 (649)
+...+-.+++.+++.+|+
T Consensus 61 ~~~~Et~ri~~eara~Ae 78 (105)
T 3v6i_B 61 RERAETEALLARYRERAE 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455666666555
No 11
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.96 E-value=1.9e+02 Score=32.21 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=5.8
Q ss_pred CCCCCCcccccc
Q 006353 303 GRQPDDSSVIAG 314 (649)
Q Consensus 303 ~~~~~~~~~~~~ 314 (649)
..-|++...|.|
T Consensus 127 ~sEpnA~lsi~~ 138 (497)
T 3iox_A 127 DLEPNANLSLTT 138 (497)
T ss_dssp SCCTTCEEEEEE
T ss_pred cCCCCceEEEec
Confidence 334555555544
No 12
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.09 E-value=23 Score=39.60 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhHHhHHHHHhhHHHHHhHHHhhhh
Q 006353 153 IRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRK 191 (649)
Q Consensus 153 ~r~~~~~le~~~~~e~~~~~~~~~~~ek~~~~r~E~~r~ 191 (649)
.+=+-++.|.-.+.+.+| .++.+++..|.+++|.
T Consensus 303 qqm~~~a~e~~~~~~~e~-----~~l~~~~~~~~~~~~~ 336 (575)
T 2i1j_A 303 QQMKAQAREEKLAKQAQR-----EKLQLEIAARERAEKK 336 (575)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTCCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 366666777666666654 4455566666666654
No 13
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=47.59 E-value=17 Score=24.72 Aligned_cols=11 Identities=45% Similarity=0.498 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 006353 267 RAALEAEKRAA 277 (649)
Q Consensus 267 ~~a~ea~~~~~ 277 (649)
|-++|+++|++
T Consensus 12 kyaaeaaekaa 22 (27)
T 3cay_A 12 KYAAEAAEKAA 22 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.06 E-value=1.1e+02 Score=32.88 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=44.9
Q ss_pred hhccccchHHHHHHHHHHHHHHhhhhHHhHHHHHhhHHHHHhH---------HHhhhhcchHHHHHHHHHH
Q 006353 143 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMR---------REMDRKNDTVYQRKIAEAL 204 (649)
Q Consensus 143 ~~~~~~~~e~~r~~~~~le~~~~~e~~~~~~~~~~~ek~~~~r---------~E~~r~~~~~~qr~iae~~ 204 (649)
+.|+.-+|+-|++++. .-..|++-+..-++.|.|+|...+.. +++++++|...+-++-+.|
T Consensus 119 e~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL 188 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQL 188 (390)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHH
Confidence 6667777777777776 44566677777788888888887544 7888888888887766644
No 15
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.54 E-value=14 Score=35.65 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHhhhh-HHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHH
Q 006353 149 VKEEIRNLISTLETQLISEN-EQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAV 211 (649)
Q Consensus 149 ~~e~~r~~~~~le~~~~~e~-~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~ 211 (649)
..+|+..++..|..++.|-. |....-+...-+-+..||.|-|.++..-||+.+++-+++.+..
T Consensus 74 S~eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk 137 (173)
T 3bbo_Z 74 TTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRK 137 (173)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 45778888888887776653 3333344555667899999999999999999988877776653
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.99 E-value=3.4e+02 Score=32.78 Aligned_cols=198 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHhhhhHHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006353 163 QLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERAL 242 (649)
Q Consensus 163 ~~~~e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~~r~~e~~~q~~er~~r~~~a~~ea~~ke~~~ 242 (649)
++.+++......+.++++ .+.|++.++... +.++.++. ..++.+.+.....+++..+-....++...+-...
T Consensus 861 ~L~~eL~el~~~L~~le~---~l~ele~~l~~L-e~e~~~l~----~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEA---ELKELEQKHTQL-CEEKNLLQ----EKLQAETELYAEAEEMRVRLAAKKQELEEILHEM 932 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHH----HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCcccccccccCCCCC
Q 006353 243 QEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRS 322 (649)
Q Consensus 243 ~e~~~r~~~~~~~~ea~~~a~~~~~~a~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (649)
+++.+..+....+.+++.+..+......+.+-.+..+..+.-.++.... .
T Consensus 933 e~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~l------------------------------e 982 (1184)
T 1i84_S 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA------------------------------D 982 (1184)
T ss_dssp HHHHHHHHHC----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------H
Q ss_pred CcchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccCchhhHHHHHHHHHHH
Q 006353 323 DGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKI 398 (649)
Q Consensus 323 d~~~k~~~~~~a~~sal~~~~~rhk~LKelr~~~~~lks~lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~l 398 (649)
....++...+......+.....+.+.+++-..........+...+..+.+.+...-.++.....++......+..+
T Consensus 983 ~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~el 1058 (1184)
T 1i84_S 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058 (1184)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 17
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=21.75 E-value=82 Score=32.57 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 006353 27 FDALLSE 33 (649)
Q Consensus 27 ~~~~~~e 33 (649)
|++.+.+
T Consensus 106 f~~~~~~ 112 (340)
T 1v9d_A 106 FSEQVEN 112 (340)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4443333
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.36 E-value=8.3e+02 Score=33.27 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=13.9
Q ss_pred cccccccccccccccc---cccccCch
Q 006353 362 SSNEDFSGYEKDISRL---IRQIRGLK 385 (649)
Q Consensus 362 ~lkk~~~~~KRqI~~k---IGQLSns~ 385 (649)
.++.++....+++.+. |+.|++-.
T Consensus 2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2060 QIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3555666666666544 56666543
No 19
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.22 E-value=5.5e+02 Score=28.72 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=4.1
Q ss_pred CCcc-cccc
Q 006353 122 GGES-YLMD 129 (649)
Q Consensus 122 ~~~~-~l~~ 129 (649)
+++| |+|-
T Consensus 279 g~ePlYISv 287 (551)
T 2b5u_A 279 GHNAVYVSV 287 (551)
T ss_dssp CCCCEEEEE
T ss_pred CCCceEEEE
Confidence 3455 6554
Done!