Query 006354
Match_columns 649
No_of_seqs 294 out of 2578
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 22:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 8.2E-73 2.8E-77 628.2 36.7 458 81-632 18-486 (549)
2 3rix_A Luciferase, luciferin 4 100.0 8.4E-73 2.9E-77 628.2 34.9 458 81-634 19-488 (550)
3 3ni2_A 4-coumarate:COA ligase; 100.0 2.6E-72 8.7E-77 622.4 35.9 451 77-631 17-480 (536)
4 3etc_A AMP-binding protein; ad 100.0 1E-71 3.6E-76 621.7 38.3 456 81-632 55-522 (580)
5 1v25_A Long-chain-fatty-acid-C 100.0 2.3E-71 7.8E-76 615.2 40.2 448 81-633 17-483 (541)
6 3o83_A Peptide arylation enzym 100.0 1.6E-71 5.5E-76 616.8 36.7 451 79-635 27-489 (544)
7 3r44_A Fatty acyl COA syntheta 100.0 5.8E-71 2E-75 608.6 36.4 442 78-630 12-458 (517)
8 2vsq_A Surfactin synthetase su 100.0 3E-72 1E-76 680.2 28.3 495 8-628 403-904 (1304)
9 2d1s_A Luciferase, luciferin 4 100.0 3E-71 1E-75 614.9 33.7 451 79-631 22-487 (548)
10 1amu_A GRSA, gramicidin synthe 100.0 2.3E-71 8E-76 617.1 32.5 460 50-629 10-474 (563)
11 4fuq_A Malonyl COA synthetase; 100.0 3.7E-71 1.3E-75 608.0 33.1 439 86-632 4-446 (503)
12 1mdb_A 2,3-dihydroxybenzoate-A 100.0 8.2E-71 2.8E-75 610.5 33.3 441 81-631 24-476 (539)
13 3ivr_A Putative long-chain-fat 100.0 2.1E-70 7.3E-75 603.5 36.4 439 81-634 5-449 (509)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.1E-70 1E-74 601.4 35.8 434 82-632 2-449 (504)
15 4dg8_A PA1221; ANL superfamily 100.0 5.7E-71 1.9E-75 619.3 30.4 429 80-627 25-461 (620)
16 4gr5_A Non-ribosomal peptide s 100.0 8.7E-71 3E-75 614.4 30.2 437 79-633 72-517 (570)
17 3c5e_A Acyl-coenzyme A synthet 100.0 6.3E-70 2.1E-74 606.5 36.9 445 82-630 38-501 (570)
18 1pg4_A Acetyl-COA synthetase; 100.0 7.8E-70 2.7E-74 614.9 37.7 470 82-633 76-565 (652)
19 1ry2_A Acetyl-coenzyme A synth 100.0 2.1E-69 7.2E-74 611.7 35.6 473 81-633 81-574 (663)
20 3rg2_A Enterobactin synthase c 100.0 3.1E-69 1.1E-73 607.2 35.4 448 78-630 23-479 (617)
21 3tsy_A Fusion protein 4-coumar 100.0 2.6E-69 8.8E-74 638.9 33.8 460 76-633 55-529 (979)
22 2v7b_A Benzoate-coenzyme A lig 100.0 4.7E-69 1.6E-73 595.7 30.9 438 81-624 23-467 (529)
23 3fce_A D-alanine--poly(phospho 100.0 3.2E-69 1.1E-73 594.6 26.8 432 82-628 1-442 (512)
24 3e7w_A D-alanine--poly(phospho 100.0 4.1E-68 1.4E-72 585.4 34.9 435 82-629 1-442 (511)
25 3l8c_A D-alanine--poly(phospho 100.0 4.8E-68 1.7E-72 586.6 29.0 428 81-622 3-440 (521)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3.8E-68 1.3E-72 584.1 22.7 427 81-632 21-453 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1.5E-67 5.1E-72 579.9 25.5 436 83-630 2-443 (501)
28 3ite_A SIDN siderophore synthe 100.0 1.9E-66 6.6E-71 579.0 32.5 447 77-627 15-470 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 6.7E-67 2.3E-71 586.7 27.9 446 80-622 9-498 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.3E-65 4.5E-70 574.7 37.1 435 75-622 14-498 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 3.4E-61 1.2E-65 526.7 31.3 408 81-581 23-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.6E-44 5.5E-49 377.8 17.1 258 274-629 36-298 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.7E-42 1.6E-46 370.1 15.5 281 271-632 81-378 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.7E-41 5.9E-46 365.8 17.1 289 252-624 70-372 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2E-41 6.9E-46 365.9 17.2 289 252-624 72-374 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.2E-30 1.8E-34 269.7 15.7 248 272-593 88-369 (369)
37 4b2g_A GH3-1 auxin conjugating 98.5 6.5E-07 2.2E-11 96.9 14.5 136 442-604 299-457 (609)
38 4eql_A 4-substituted benzoates 98.5 4.6E-07 1.6E-11 98.0 13.0 137 442-605 294-446 (581)
39 4epl_A Jasmonic acid-amido syn 98.5 1.4E-06 4.7E-11 94.0 14.1 138 442-605 299-453 (581)
40 3lax_A Phenylacetate-coenzyme 98.3 9.9E-08 3.4E-12 80.4 0.3 50 580-631 1-50 (109)
41 3gxs_A Phenylacetate-coenzyme 98.1 4E-07 1.4E-11 76.6 0.3 52 580-633 1-52 (109)
42 3qov_A Phenylacetate-coenzyme 92.4 1.7 5.7E-05 45.4 14.4 105 128-233 103-215 (436)
43 2y27_A Phenylacetate-coenzyme 92.4 1.9 6.4E-05 45.0 14.8 105 128-233 107-219 (437)
44 2y4o_A Phenylacetate-coenzyme 91.7 1.7 5.7E-05 45.5 13.4 104 129-233 110-221 (443)
45 3ipl_A 2-succinylbenzoate--COA 81.3 28 0.00096 36.6 15.7 100 128-231 180-281 (501)
46 1mdb_A 2,3-dihydroxybenzoate-A 80.5 32 0.0011 36.6 15.9 102 128-233 199-307 (539)
47 2d1s_A Luciferase, luciferin 4 80.3 16 0.00055 39.1 13.4 102 128-231 209-316 (548)
48 3o83_A Peptide arylation enzym 77.5 29 0.001 37.0 14.4 102 128-233 208-316 (544)
49 3r44_A Fatty acyl COA syntheta 74.5 35 0.0012 36.1 13.9 100 129-233 188-293 (517)
50 3hgu_A EHPF; phenazine, antibi 73.8 9.7 0.00033 38.4 8.9 87 129-217 109-220 (369)
51 3rg2_A Enterobactin synthase c 70.8 75 0.0026 34.4 15.8 103 128-234 201-312 (617)
52 3rix_A Luciferase, luciferin 4 68.9 35 0.0012 36.4 12.4 105 128-233 207-316 (550)
53 1t5h_X 4-chlorobenzoyl COA lig 68.3 35 0.0012 35.9 12.1 99 129-231 171-279 (504)
54 3c5e_A Acyl-coenzyme A synthet 65.6 66 0.0023 34.4 13.8 102 129-233 224-331 (570)
55 1v25_A Long-chain-fatty-acid-C 65.2 48 0.0016 35.2 12.5 103 129-232 194-301 (541)
56 3fce_A D-alanine--poly(phospho 65.2 31 0.0011 36.3 11.0 101 129-232 162-269 (512)
57 3kxw_A Saframycin MX1 syntheta 65.1 45 0.0015 35.8 12.4 101 128-231 184-296 (590)
58 3e7w_A D-alanine--poly(phospho 64.8 52 0.0018 34.6 12.6 101 129-232 161-268 (511)
59 4dg8_A PA1221; ANL superfamily 60.6 53 0.0018 35.7 11.9 102 129-234 182-286 (620)
60 3g7s_A Long-chain-fatty-acid-- 58.5 86 0.0029 33.2 13.1 100 129-232 198-304 (549)
61 1pg4_A Acetyl-COA synthetase; 57.3 75 0.0026 34.7 12.5 104 129-234 274-388 (652)
62 3ivr_A Putative long-chain-fat 57.1 99 0.0034 32.3 13.1 98 129-231 178-279 (509)
63 4gs5_A Acyl-COA synthetase (AM 56.9 50 0.0017 32.9 10.2 98 129-232 55-156 (358)
64 4gr5_A Non-ribosomal peptide s 56.4 65 0.0022 34.4 11.7 102 129-234 232-336 (570)
65 3ni2_A 4-coumarate:COA ligase; 55.4 64 0.0022 34.2 11.3 104 129-233 196-306 (536)
66 1ry2_A Acetyl-coenzyme A synth 51.1 87 0.003 34.3 11.7 102 130-233 281-393 (663)
67 3nyq_A Malonyl-COA ligase; A/B 50.1 86 0.003 32.8 11.2 85 129-218 173-259 (505)
68 3etc_A AMP-binding protein; ad 48.5 91 0.0031 33.4 11.2 85 149-233 260-350 (580)
69 3ite_A SIDN siderophore synthe 48.5 45 0.0015 35.6 8.7 106 129-234 193-304 (562)
70 3tbh_A O-acetyl serine sulfhyd 46.4 86 0.003 30.9 9.8 66 146-211 61-127 (334)
71 3gqw_A Fatty acid AMP ligase; 44.6 1.3E+02 0.0044 31.9 11.7 102 128-231 193-306 (576)
72 3t5a_A Long-chain-fatty-acid-- 44.2 88 0.003 32.3 10.1 101 128-232 200-319 (480)
73 1amu_A GRSA, gramicidin synthe 43.8 71 0.0024 34.1 9.4 100 129-233 200-302 (563)
74 3tsy_A Fusion protein 4-coumar 43.1 1.3E+02 0.0045 34.5 12.2 107 128-235 242-355 (979)
75 3vc3_A Beta-cyanoalnine syntha 40.9 1.2E+02 0.0042 29.9 10.0 71 141-211 72-142 (344)
76 3l8c_A D-alanine--poly(phospho 40.4 2E+02 0.0069 29.9 12.3 103 128-231 162-271 (521)
77 4fuq_A Malonyl COA synthetase; 33.2 1.5E+02 0.0051 30.9 9.7 85 128-218 172-258 (503)
78 2v7b_A Benzoate-coenzyme A lig 31.7 85 0.0029 33.1 7.5 87 129-218 201-290 (529)
79 2vsq_A Surfactin synthetase su 29.9 1.3E+02 0.0045 35.9 9.4 103 129-235 625-731 (1304)
80 3ju7_A Putative PLP-dependent 29.7 1.2E+02 0.004 30.4 7.8 60 146-208 69-135 (377)
81 3ijw_A Aminoglycoside N3-acety 26.6 88 0.003 29.7 5.6 24 141-164 18-41 (268)
82 1z7w_A Cysteine synthase; tran 26.5 2.9E+02 0.0098 26.8 9.8 65 147-211 57-122 (322)
83 4aec_A Cysteine synthase, mito 26.3 2.7E+02 0.0094 28.4 9.8 63 148-210 166-229 (430)
84 4eez_A Alcohol dehydrogenase 1 24.8 2.8E+02 0.0096 26.9 9.6 77 131-210 137-216 (348)
85 3tqh_A Quinone oxidoreductase; 23.9 2.1E+02 0.0071 27.6 8.3 75 131-210 126-204 (321)
86 2q3b_A Cysteine synthase A; py 23.6 3.8E+02 0.013 25.7 10.0 64 147-211 58-122 (313)
87 3sr3_A Microcin immunity prote 23.0 2.7E+02 0.0092 27.3 8.8 58 151-209 9-86 (336)
88 3jv7_A ADH-A; dehydrogenase, n 21.4 4E+02 0.014 25.8 9.9 78 131-211 143-225 (345)
89 2nyg_A YOKD protein; PFAM02522 21.4 1.3E+02 0.0045 28.7 5.8 23 142-164 17-39 (273)
90 3tla_A MCCF; serine protease, 21.3 3E+02 0.01 27.5 8.7 59 151-209 39-116 (371)
91 4h1h_A LMO1638 protein; MCCF-l 20.9 2.7E+02 0.0092 27.2 8.2 59 151-209 8-85 (327)
92 3sma_A FRBF; N-acetyl transfer 20.7 1.5E+02 0.0052 28.4 6.0 29 130-165 21-49 (286)
93 1zsy_A Mitochondrial 2-enoyl t 20.5 2.9E+02 0.0098 27.1 8.6 78 131-209 140-223 (357)
94 3two_A Mannitol dehydrogenase; 20.1 2.5E+02 0.0085 27.5 8.0 73 131-207 150-225 (348)
95 2egu_A Cysteine synthase; O-ac 20.1 4E+02 0.014 25.4 9.4 64 147-211 56-120 (308)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.2e-73 Score=628.17 Aligned_cols=458 Identities=21% Similarity=0.290 Sum_probs=368.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|+++++++|+++|+++.+ +. + ..+..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~-----------~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAE-----------PK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEES-----------SC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCC-----------Cc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4799999999999999999999752 11 0 0122357999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~ 240 (649)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+.......+ ++.++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999998888777665544 4555554321
Q ss_pred CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (649)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 320 (649)
..+++++...............++|+|+|+|||||||.||||++||+++++.+......+ ++.++|++
T Consensus 157 -----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 224 (549)
T 3g7s_A 157 -----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTI 224 (549)
T ss_dssp -----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEE
T ss_pred -----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEE
Confidence 234566655444332222222348999999999999999999999999999999988888 89999999
Q ss_pred EEccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354 321 LAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (649)
Q Consensus 321 l~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 397 (649)
++++|++|++++...+.++..|+++++ +++..+.+. ++++++|+++++|+++..+.+.......
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~-- 291 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNK-- 291 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCC--
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhcc--
Confidence 999999999998888889999999998 445555555 9999999999999999999875332110
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh----cC---
Q 006354 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC----MG--- 470 (649)
Q Consensus 398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~----~~--- 470 (649)
....++||.+++||+++++++.+.+.+. ++
T Consensus 292 -------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 328 (549)
T 3g7s_A 292 -------------------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328 (549)
T ss_dssp -------------------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTT
T ss_pred -------------------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcc
Confidence 0012489999999999999999988887 55
Q ss_pred CccccccCcccccccccccCCCC-CCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccch
Q 006354 471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (649)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~ 549 (649)
+++++.||+||++.+++...... ...+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.|||++|+.|+
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 405 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRE---LGVGESGEIVIRGPNIFKGYWKREKENQ 405 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCE---ECTTCCEEEEEESTTSCSEETTCTTGGG
T ss_pred ccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcC---CCCCCceEEEEECcchhhhhCCChhhhh
Confidence 88999999999998877655433 4568999999999999999777665 6899999999999999999999999999
Q ss_pred hhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI 629 (649)
Q Consensus 550 ~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~ 629 (649)
++|..+.+|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.+
T Consensus 406 ~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~g~~~~a 483 (549)
T 3g7s_A 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVM-DVAVIGKPDEEAGEVPKA 483 (549)
T ss_dssp TSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEE-EEEEECCCC------CEE
T ss_pred hhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCee-eEEEEeeEccccCceEEE
Confidence 999755564459999999999999999999999999998 599999999999999999999 999999998887766555
Q ss_pred hhh
Q 006354 630 FQS 632 (649)
Q Consensus 630 ~~~ 632 (649)
+..
T Consensus 484 ~vv 486 (549)
T 3g7s_A 484 FIV 486 (549)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=8.4e-73 Score=628.24 Aligned_cols=458 Identities=23% Similarity=0.288 Sum_probs=336.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|.++++++|+++|++... ++. ..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 3799999999999999999986321 111 1137999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~ 240 (649)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+..+....+.++.++.++......
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ- 159 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT-
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcccc-
Confidence 9999999999999999999999999999999999999999999999999999988888877888888888766543211
Q ss_pred CCCCCCCCCceEeehHHHHhcCCCCC------CCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--C
Q 006354 241 SGVSGGISNWTVSSFSEVEKLGKRSP------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--P 312 (649)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~ 312 (649)
...++.++........ .+.....++|+|+|+|||||||.||||++||+++++.+......+ .
T Consensus 160 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~ 229 (550)
T 3rix_A 160 ----------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 229 (550)
T ss_dssp ----------TBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSC
T ss_pred ----------CcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccc
Confidence 2345555554332211 111223468899999999999999999999999998887776552 2
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (649)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 389 (649)
.+.++|++++++|++|++++...+.++..|+++++. ++..+.+. ++++++|+++++|+++..+.+.
T Consensus 230 ~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 298 (550)
T 3rix_A 230 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKS 298 (550)
T ss_dssp CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHC
T ss_pred cCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhC
Confidence 678899999999999999998888899999999994 44444444 9999999999999999988763
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (649)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~ 469 (649)
... .....++||.+++||+++++++.+.+.+.+
T Consensus 299 ~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 299 TLI-----------------------------------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp CGG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred ccc-----------------------------------------------cccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 110 011125899999999999999999999988
Q ss_pred CCc-cccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354 470 GAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (649)
Q Consensus 470 ~~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (649)
+.. +++.||+||+++.++.........+++|+|+|+++++|+|++++.. +++|+.|||+|+|++++.|||++|+.|
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t 408 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMSGYVNNPEAT 408 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred CCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcC---CCCCCCeEEEEeCCCcchhhcCChhhh
Confidence 875 8999999999988887777777789999999999999999766654 789999999999999999999999999
Q ss_pred hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK 628 (649)
Q Consensus 549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~ 628 (649)
++.|. .+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.
T Consensus 409 ~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~g~~~~ 482 (550)
T 3rix_A 409 NALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIF-DAGVAGLPDDDAGELPA 482 (550)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTCCEEEC-------------------------------------------------
T ss_pred hhhcC--CC--CCeecCcEEEEeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEeecCCCCceEE
Confidence 99996 56 89999999999999999999999999998 599999999999999999999 99999999999888777
Q ss_pred hhhhhh
Q 006354 629 IFQSCV 634 (649)
Q Consensus 629 ~~~~~~ 634 (649)
++....
T Consensus 483 a~vv~~ 488 (550)
T 3rix_A 483 AVVVLE 488 (550)
T ss_dssp ------
T ss_pred EEEEec
Confidence 766554
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.6e-72 Score=622.40 Aligned_cols=451 Identities=22% Similarity=0.277 Sum_probs=375.4
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (649)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd 156 (649)
+.+...|++++|+++++++|+++|+++.+ +|+ .+||+||.++++++|++|+++|+++||
T Consensus 17 ~~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd 75 (536)
T 3ni2_A 17 YIPKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQGD 75 (536)
T ss_dssp CCCSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34555799999999999999999998631 233 799999999999999999999999999
Q ss_pred EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (649)
Q Consensus 157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~ 236 (649)
+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+....... .+ .++.++...
T Consensus 76 ~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 153 (536)
T 3ni2_A 76 VIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAP 153 (536)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCC
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999998887776654332 22 344433211
Q ss_pred CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC---CC
Q 006354 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PN 313 (649)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~ 313 (649)
-....++++...... ..+.....++|+|+|+|||||||.||||++||+++++.+....... ..
T Consensus 154 -------------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~ 219 (536)
T 3ni2_A 154 -------------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLY 219 (536)
T ss_dssp -------------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSC
T ss_pred -------------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcccccc
Confidence 123455665543322 2233456789999999999999999999999999999887765422 16
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (649)
Q Consensus 314 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 389 (649)
+.++|++++.+|++|++++.. ++.++..|+++++.+ +..+.+. ++++++|++.++|+++..+.+.
T Consensus 220 ~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 288 (536)
T 3ni2_A 220 FHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMSIAKS 288 (536)
T ss_dssp CCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTC
T ss_pred CCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHHHHhC
Confidence 788999999999999999865 678899999999944 3344444 9999999999999999988653
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (649)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~ 469 (649)
... .....++||.+++||+++++++.+.+++.+
T Consensus 289 ~~~-----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 321 (536)
T 3ni2_A 289 PDL-----------------------------------------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKF 321 (536)
T ss_dssp SCG-----------------------------------------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHC
T ss_pred ccc-----------------------------------------------ccCCCccceEEEECCCCCCHHHHHHHHHHC
Confidence 110 011225899999999999999999999888
Q ss_pred -CCccccccCcccccccccccC-----CCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354 470 -GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (649)
Q Consensus 470 -~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (649)
+++++|.||+||++.+++... ......+++|+|++|++++|+|++++.. +++|+.|||+|+|++++.|||+
T Consensus 322 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~ 398 (536)
T 3ni2_A 322 PQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS---LPRNQPGEICIRGDQIMKGYLN 398 (536)
T ss_dssp TTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETT
T ss_pred CCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcC---CCCCCccEEEEeCcccchhhcC
Confidence 899999999999987665432 2234568999999999999999766654 7899999999999999999999
Q ss_pred CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL 623 (649)
Q Consensus 544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~ 623 (649)
+|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..
T Consensus 399 ~p~~t~~~~~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~ 472 (536)
T 3ni2_A 399 DPEATSRTID--KE--GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEIS-DAAVVGLKDEDA 472 (536)
T ss_dssp CHHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEE-EEEEEEEEETTT
T ss_pred ChhHHHhhcc--CC--CceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEeeecCCC
Confidence 9999999996 56 89999999999999999999999999998 599999999999999999999 999999888777
Q ss_pred ccchhhhh
Q 006354 624 ASSTKIFQ 631 (649)
Q Consensus 624 ~~~~~~~~ 631 (649)
++.+.++.
T Consensus 473 g~~~~a~v 480 (536)
T 3ni2_A 473 GEVPVAFV 480 (536)
T ss_dssp EEEEEEEE
T ss_pred CceeEEEE
Confidence 65544443
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-71 Score=621.73 Aligned_cols=456 Identities=16% Similarity=0.181 Sum_probs=379.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
.+.++++|+++|+++|+++|+++.+ +. +..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~-------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l 116 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCD-----------DY-------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEE-----------SS-------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEc-----------CC-------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3556699999999999999999753 11 23357999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH--HHHHHhhccCCCc-cEEEEecCCCC
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL--KKLSAVSSSLKTI-KNVIYFENDGS 237 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~l~~~~~~~~~~-~~ii~~~~~~~ 237 (649)
+++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+.. +.+..+....+.+ ..++.++....
T Consensus 117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (580)
T 3etc_A 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196 (580)
T ss_dssp ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999987654 5666655555554 45555543211
Q ss_pred CccCCCCCCCCCceEeehHHHHhcCCCCCCCC---CCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (649)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 314 (649)
..+.++.+...........+ ....++|+|+|+|||||||.||||+++|.++++.+......+ .+
T Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~ 263 (580)
T 3etc_A 197 ------------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV 263 (580)
T ss_dssp ------------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred ------------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence 12356666655443322222 256789999999999999999999999999988887766666 88
Q ss_pred CCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (649)
Q Consensus 315 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 393 (649)
.+++++++.+|++|..+++. ++.++..|+++++.++..+ + +..++..++++++|+++++|++++.+.+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-- 335 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-E-----AKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-- 335 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC-C-----HHHHHHHHHHHTCCEEEECHHHHHHHHTSCC--
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC-C-----HHHHHHHHHHHCCeEEEccHHHHHHHHhccc--
Confidence 99999999999999988876 6778999999988432211 0 1122333999999999999999998865210
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcc
Q 006354 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (649)
Q Consensus 394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l 473 (649)
.....++||.+++||+++++++.+.|.+.+|+++
T Consensus 336 ----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i 369 (580)
T 3etc_A 336 ----------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL 369 (580)
T ss_dssp -------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCC
T ss_pred ----------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeE
Confidence 1112258999999999999999999999899999
Q ss_pred ccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc-----ccccccccCCCccc
Q 006354 474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-----FNVTAGYFNNPGKT 548 (649)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g-----~~v~~gY~~~~~~t 548 (649)
++.||+||++..++..+......+++|+|+||++++|+| +++.. +++|+.|||+|+| ++++.||+++|+.|
T Consensus 370 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~---~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t 445 (580)
T 3etc_A 370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRL---CEVGEEGEIVINTMEGKPVGLFVHYGKDPERT 445 (580)
T ss_dssp EEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred ecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCC---CCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence 999999999888777666667789999999999999999 55543 7899999999997 78999999999999
Q ss_pred hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK 628 (649)
Q Consensus 549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~ 628 (649)
++.| .+ |||+|||+|++|+||+|+|+||+||+||++ |++|+|.|||++|.+||+|. +|+|+|.+++..|+.+.
T Consensus 446 ~~~f---~~--gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~-G~~I~p~eIE~~l~~~p~V~-~a~Vvg~~~~~~g~~~~ 518 (580)
T 3etc_A 446 EETW---HD--GYYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAVL-ECAITGVPDPVRGQVIK 518 (580)
T ss_dssp HHHE---ET--TEEEEEEEEEECTTSCEEEEEESSSCEEET-TEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEE
T ss_pred Hhhc---CC--CEEecCcEEEECCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCee-eEEEEeeeccCCCcEEE
Confidence 9999 56 899999999999999999999999999986 99999999999999999999 99999999988876665
Q ss_pred hhhh
Q 006354 629 IFQS 632 (649)
Q Consensus 629 ~~~~ 632 (649)
++..
T Consensus 519 a~vv 522 (580)
T 3etc_A 519 ATIV 522 (580)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.3e-71 Score=615.21 Aligned_cols=448 Identities=22% Similarity=0.284 Sum_probs=364.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|+++++++|+++|+.+.+ + +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3689999999999999999998531 1 12247999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~ 240 (649)
+++|++++++++|||+++|+++||++|.++.+++.++|++++++++|++.+..+.+..+....+.++.++.++.....
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-- 155 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence 999999999999999999999999999999999999999999999999999888877776666777777765543210
Q ss_pred CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH--HhhCCCCCCCc
Q 006354 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD 318 (649)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d 318 (649)
...+++++...... .....++++++|+|||||||.||||++||+++++..... ...+ .++++|
T Consensus 156 ----------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d 220 (541)
T 1v25_A 156 ----------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKD 220 (541)
T ss_dssp ----------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTC
T ss_pred ----------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCC
Confidence 12345555432211 134567899999999999999999999999998776653 2345 788999
Q ss_pred EEEEccChHHHHHHHHHHHHHHhCceEEeCC----cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGS----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (649)
Q Consensus 319 ~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~----~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 394 (649)
++++.+|++|++++...+.+++.|+++++.+ +..+.+. ++++++|+++++|+++..+.+......
T Consensus 221 ~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~ 289 (541)
T 1v25_A 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLESTG 289 (541)
T ss_dssp EEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred EEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHH-----------HHhcCeeEEecchHHHHHHHhhhhccC
Confidence 9999999999999877788999999999843 3334444 999999999999999999887533210
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccc
Q 006354 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (649)
Q Consensus 395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~ 474 (649)
...++||.+++||+++++++.+.| +.+|++++
T Consensus 290 -----------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~ 321 (541)
T 1v25_A 290 -----------------------------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVR 321 (541)
T ss_dssp -----------------------------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEE
T ss_pred -----------------------------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCcee
Confidence 112489999999999999999999 55799999
Q ss_pred cccCcccccccccccCCCC-----------CCCCccCCCcccceEEEEecCCCCcccCCCC--CCccEEEEccccccccc
Q 006354 475 QAYGLTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGY 541 (649)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~--g~~GEl~v~g~~v~~gY 541 (649)
+.||+||++.+++...... ...+++|+|+|+++++|+| +++.. ++. ++.|||+|+|++++.||
T Consensus 322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~---~~~~~~~~GEl~v~g~~v~~GY 397 (541)
T 1v25_A 322 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP---VPKDGKALGEVQLKGPWITGGY 397 (541)
T ss_dssp EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCB---CCSSSCCCEEEEEESTTSBSSC
T ss_pred ecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCC---CCCCCCcceEEEEeCcchhccc
Confidence 9999999988776553321 1247899999999999999 55544 442 36899999999999999
Q ss_pred cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM 621 (649)
Q Consensus 542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~ 621 (649)
|++|+.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++
T Consensus 398 ~~~p~~t~~~f~--~~--g~~~TGDlg~~d~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~ 471 (541)
T 1v25_A 398 YGNEEATRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVK-EAAVVAIPHP 471 (541)
T ss_dssp BTCHHHHHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC-----------CEEEEECS
T ss_pred cCChhhhhhhcc--CC--CCeEcCCEEEEcCCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCce-EEEEEEecCC
Confidence 999999999996 56 89999999999999999999999999997 599999999999999999999 9999999998
Q ss_pred Ccccchhhhhhh
Q 006354 622 KLASSTKIFQSC 633 (649)
Q Consensus 622 ~~~~~~~~~~~~ 633 (649)
..++.+.++...
T Consensus 472 ~~~~~~~a~vv~ 483 (541)
T 1v25_A 472 KWQERPLAVVVP 483 (541)
T ss_dssp SSSEEEEECC--
T ss_pred CcCceEEEEEEE
Confidence 888776666544
No 6
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-71 Score=616.84 Aligned_cols=451 Identities=19% Similarity=0.232 Sum_probs=333.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (649)
Q Consensus 79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V 158 (649)
....|+.++|+++++++|+++|+++ ++ +.+||+||.++++++|++|+++|+++||+|
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 83 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIIC------------GE-----------RQLSYIELDRLSTNLATRLAEKGLGKGDTA 83 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEc------------CC-----------CceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence 3457999999999999999999986 33 379999999999999999999999999999
Q ss_pred EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEec
Q 006354 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE 233 (649)
Q Consensus 159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~~ 233 (649)
+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+..+....+....++..+
T Consensus 84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (544)
T 3o83_A 84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN 163 (544)
T ss_dssp EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence 9999999999999999999999999999999999999999999999999987653 33344444445556666554
Q ss_pred CCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCC
Q 006354 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (649)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~ 313 (649)
.... ...+.++...............++|+|+|+|||||||.||||++||+++.+.+.+....+ +
T Consensus 164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~ 228 (544)
T 3o83_A 164 HQAT--------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228 (544)
T ss_dssp CCTT--------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred CCcc--------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence 3211 123444444433333333556789999999999999999999999999999999999888 9
Q ss_pred CCCCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354 314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (649)
Q Consensus 314 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 388 (649)
+.++|++++++|++|.+++.. ++.++..|+++++.+ +..+.+. ++++++|+++++|+++..+.+
T Consensus 229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHh
Confidence 999999999999999999874 778899999999943 3444444 999999999999999999877
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (649)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~ 468 (649)
....... ..++||.+++||+++++++.+.+.+.
T Consensus 298 ~~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~ 330 (544)
T 3o83_A 298 KAAQYKD-----------------------------------------------QIQSLKLLQVGGASFPESLARQVPEV 330 (544)
T ss_dssp HHTTTHH-----------------------------------------------HHTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred chhhccc-----------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 5321100 11489999999999999999999998
Q ss_pred cCCccccccCcccccccccccCCCC-CCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCc
Q 006354 469 MGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (649)
Q Consensus 469 ~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (649)
+++++++.||+||++..++...... ...+++|+|+ ++++++|+| +++.. +++|+.|||+|+|++++.|||++|+
T Consensus 331 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~ 406 (544)
T 3o83_A 331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYRE---VPEGEIGMLATRGPYTFCGYYQSPE 406 (544)
T ss_dssp HCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred hCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCCcchhhcCChh
Confidence 9999999999999876554332221 2237899996 899999999 66554 7899999999999999999999999
Q ss_pred cchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccc
Q 006354 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASS 626 (649)
Q Consensus 547 ~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~ 626 (649)
.|++.|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++..++..|+.
T Consensus 407 ~t~~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~g~~ 480 (544)
T 3o83_A 407 HNSQVFD--ED--NYYYSGDLVQRTPDGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVM-HAALVAIVDEQFGEK 480 (544)
T ss_dssp HHHHHBC--TT--CCEEEEEEEEECTTSCEEEEEEEC-------------------------------------------
T ss_pred hhhhhCC--CC--CCeEcCCEEEEcCCCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCcc-EEEEEeccCCCCCce
Confidence 9999996 56 89999999999999999999999999997 599999999999999999999 999999999998888
Q ss_pred hhhhhhhhh
Q 006354 627 TKIFQSCVT 635 (649)
Q Consensus 627 ~~~~~~~~~ 635 (649)
+.++....+
T Consensus 481 ~~a~vv~~~ 489 (544)
T 3o83_A 481 SCAFIVSRN 489 (544)
T ss_dssp ---------
T ss_pred EEEEEEeCC
Confidence 777766543
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.8e-71 Score=608.56 Aligned_cols=442 Identities=22% Similarity=0.287 Sum_probs=368.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (649)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~ 157 (649)
.+...|+.++|+++++++|+++|+++.+ . ..++||+||.++++++|++|+++|+++||+
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~-----------~----------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~ 70 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPS-----------T----------DVRMTYAQMNALANRCADVLTALGIAKGDR 70 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGG-----------G----------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCC-----------c----------CceeeHHHHHHHHHHHHHHHHHcCCCCcCE
Confidence 3556899999999999999999998631 1 136999999999999999999999999999
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC
Q 006354 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (649)
Q Consensus 158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~ 237 (649)
|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+..+....+....++.+.
T Consensus 71 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---- 146 (517)
T 3r44_A 71 VALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI---- 146 (517)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE----
T ss_pred EEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc----
Confidence 9999999999999999999999999999999999999999999999999999988887776654433222111110
Q ss_pred CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (649)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 317 (649)
...++.+...... ...+.....++|+|+|+|||||||.||||++||+++++.+......+ ++.++
T Consensus 147 -------------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~ 211 (517)
T 3r44_A 147 -------------GADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYR 211 (517)
T ss_dssp -------------EHHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTT
T ss_pred -------------CcccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCC
Confidence 0112333333222 22234556789999999999999999999999999999999999888 99999
Q ss_pred cEEEEccChHHHHHHHHHHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (649)
Q Consensus 318 d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 394 (649)
|++++.+|++|++++...+.+++.|+++++. ++..+.+. ++++++|++.++|++++.+.+....
T Consensus 212 d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~-- 278 (517)
T 3r44_A 212 DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPEF-- 278 (517)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHHH--
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCccc--
Confidence 9999999999999998866666699999984 34444444 9999999999999999988763221
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccc
Q 006354 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (649)
Q Consensus 395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~ 474 (649)
.....++||.+++||+++++++.+.+... +++++
T Consensus 279 ---------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~ 312 (517)
T 3r44_A 279 ---------------------------------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVV 312 (517)
T ss_dssp ---------------------------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEE
T ss_pred ---------------------------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEE
Confidence 11223589999999999999999999887 99999
Q ss_pred cccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhh
Q 006354 475 QAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552 (649)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f 552 (649)
+.||+||+++.++..... ....+++|+|+++++++|+| +++.. ++.| .|||+|+|++++.|||++|+.|++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f 387 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVI---REHG-EGEVVIKSDILLKEYWNRPEATRDAF 387 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCE---ESSE-EEEEEEEETTSCSEETTCHHHHHHTE
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCC---CCCC-CeEEEEeCcchhhhhCCChhhhHhhh
Confidence 999999998877655433 34568999999999999999 55543 4566 89999999999999999999999999
Q ss_pred ccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF 630 (649)
Q Consensus 553 ~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~ 630 (649)
.+ |||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++
T Consensus 388 ---~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~~~Vv~~~~~~~g~~~~a~ 458 (517)
T 3r44_A 388 ---DN--GWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVS-EVAVIGLPDEKWGEIAAAI 458 (517)
T ss_dssp ---ET--TEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEE
T ss_pred ---cC--CCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEe-EEEEEeccccccCceEEEE
Confidence 56 89999999999999999999999999998 599999999999999999999 9999999888776554443
No 8
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3e-72 Score=680.20 Aligned_cols=495 Identities=18% Similarity=0.235 Sum_probs=403.9
Q ss_pred CcccccccccCCCccceehheeeecceeEeeehhccccccccccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHH
Q 006354 8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL 87 (649)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~ 87 (649)
.||+++|++..+..|..++..++..+ +++ |..+ +.++++++..+++.++...+ ....+.+. .+++++
T Consensus 403 ~y~~~lf~~~~i~~l~~~~~~lL~~l----~~~--p~~~---~~~~~~l~~~e~~~~~~~~~---~~~~~~~~-~~l~~~ 469 (1304)
T 2vsq_A 403 AYNENVFDEAFILRLKSQLLTAIQQL----IQN--PDQP---VSTINLVDDREREFLLTGLN---PPAQAHET-KPLTYW 469 (1304)
T ss_dssp EEETTTSCHHHHHHHHHHHHHHHHHH----HHS--TTSB---GGGCCCCCHHHHHHHHTTTS---CCCCCCCC-CCHHHH
T ss_pred EECCccCCHHHHHHHHHHHHHHHHHh----ccC--cccc---ccccCCCCHHHHHHHHHhcC---CCCCCCCC-CCHHHH
Confidence 79999999999999999888888733 344 7777 88999999988887765544 22233333 799999
Q ss_pred HHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH
Q 006354 88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE 167 (649)
Q Consensus 88 ~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~ 167 (649)
|+++++++||++|+++ +++ .+||+||.++++++|++|+++|+++|++|+|+++|+++
T Consensus 470 ~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~ 526 (1304)
T 2vsq_A 470 FKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE 526 (1304)
T ss_dssp HHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH
T ss_pred HHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHH
Confidence 9999999999999985 333 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCC
Q 006354 168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247 (649)
Q Consensus 168 ~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 247 (649)
+++++|||+++|+++||+||.+|.+++.++++++++++++++.+....+. .++....++.+++..
T Consensus 527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~----------- 591 (1304)
T 2vsq_A 527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT----------- 591 (1304)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----------
T ss_pred HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----------
Confidence 99999999999999999999999999999999999999999987543321 122222223222110
Q ss_pred CCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 006354 248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327 (649)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~ 327 (649)
.. ......+.....++++|||+|||||||.||||+++|+++.+. .+....+ .++++|++++++|++
T Consensus 592 ---------~~---~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~ 657 (1304)
T 2vsq_A 592 ---------RF---EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYA 657 (1304)
T ss_dssp ---------GG---GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTT
T ss_pred ---------cc---ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCcc
Confidence 00 011111234557899999999999999999999999999876 3444455 788999999999999
Q ss_pred HHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 006354 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI 407 (649)
Q Consensus 328 h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 407 (649)
|+.+.+.++.+|+.|+++++.++....+. ..+...++++++|+++++|++++.+.+.....
T Consensus 658 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~-------------- 718 (1304)
T 2vsq_A 658 FDAFTFDFYASMLNAARLIIADEHTLLDT-----ERLTDLILQENVNVMFATTALFNLLTDAGEDW-------------- 718 (1304)
T ss_dssp STHHHHHHHHHHTTTCEEEECCGGGTTCH-----HHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH--------------
T ss_pred HHHHHHHHHHHHHcCCEEEECChhhcCCH-----HHHHHHHHHcCCcEEEccHHHHHHHHhhchhc--------------
Confidence 99999889999999999999665443332 22333399999999999999999886531100
Q ss_pred HHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCcccccccc
Q 006354 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS 486 (649)
Q Consensus 408 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~ 486 (649)
+ ++||.+++|||++++++.+.|.+.+ +++++|.||+||+++++
T Consensus 719 --------~----------------------------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 719 --------M----------------------------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762 (1304)
T ss_dssp --------H----------------------------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred --------C----------------------------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence 0 2799999999999999988887776 47899999999999887
Q ss_pred cccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC--Cccc
Q 006354 487 TFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMC 560 (649)
Q Consensus 487 ~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~~~~ 560 (649)
+..... .....++|+|++|++++|+| +++.. +++|+.|||||+|+++++||+|+|+.|+++|..++ +|.+
T Consensus 763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~ 838 (1304)
T 2vsq_A 763 TAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQL---QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET 838 (1304)
T ss_dssp EEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCE
T ss_pred eeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCC---CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCe
Confidence 765432 23457899999999999999 55543 78999999999999999999999999999997543 3558
Q ss_pred ceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK 628 (649)
Q Consensus 561 w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~ 628 (649)
||||||+|++++||.|+|+||+||+||++ |+||+|+|||++|.+||+|. +|+|++..+...+..+.
T Consensus 839 ~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~rie~~eIE~~l~~~p~V~-~a~V~~~~~~~~~~~l~ 904 (1304)
T 2vsq_A 839 LYRTGDLARWLPDGTIEYAGRIDDQVKIR-GHRIELEEIEKQLQEYPGVK-DAVVVADRHESGDASIN 904 (1304)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGEEEET-TEEEEHHHHHHHHHHSSSCC-EEEEEEECCSSSCCEEE
T ss_pred eEecCCeEEEcCCCeEEEEcCCCCEEEEC-CEeeCHHHHHHHHHhCCCCc-eEEEEEEecCCCCEEEE
Confidence 99999999999999999999999999995 99999999999999999999 99999988776554443
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3e-71 Score=614.94 Aligned_cols=451 Identities=25% Similarity=0.330 Sum_probs=374.3
Q ss_pred CCCCCHHH-HHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354 79 KGASTMAA-LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (649)
Q Consensus 79 ~~~~tl~~-~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~ 157 (649)
+...|+.+ +|.++++++ +++|+++.. ++ +.+||+||.++++++|++|+++|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 33458999 899999999 999998521 22 36999999999999999999999999999
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCC
Q 006354 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (649)
Q Consensus 158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~ 237 (649)
|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+..+....+....++.++....
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999888777666555554556666543210
Q ss_pred CccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCC------CCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh-
Q 006354 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLP------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL- 310 (649)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~- 310 (649)
. ....+++++.........+.... .++|+|+|+|||||||.||||++||+++++.+......
T Consensus 160 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~ 228 (548)
T 2d1s_A 160 Y-----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228 (548)
T ss_dssp B-----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT
T ss_pred c-----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh
Confidence 0 01234666655432210111111 23899999999999999999999999999998887766
Q ss_pred --CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHH
Q 006354 311 --IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (649)
Q Consensus 311 --~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~ 384 (649)
+ .++++|++++++|++|++++.. ++.++ .|+++++.+ +..+.+. ++++++|+++++|++++
T Consensus 229 ~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~ 295 (548)
T 2d1s_A 229 YGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFA 295 (548)
T ss_dssp TSC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHH
T ss_pred hcc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHH
Confidence 5 7888999999999999999877 45566 999999843 4444444 99999999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHH
Q 006354 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (649)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~ 464 (649)
.+.+.... .....++||.+++||+++++++.+.
T Consensus 296 ~l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~ 328 (548)
T 2d1s_A 296 ILNKSELL-----------------------------------------------NKYDLSNLVEIASGGAPLSKEVGEA 328 (548)
T ss_dssp HHHHCSCG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhCccc-----------------------------------------------ccccccceeEEEEcCccCCHHHHHH
Confidence 88652100 0011248999999999999999999
Q ss_pred HHhhc-CCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccC
Q 006354 465 INICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (649)
Q Consensus 465 ~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (649)
+.+.+ ++++++.||+||++.+++.........+++|+|+|+++++|+|++++.. +++|+.|||+|+|++++.|||+
T Consensus 329 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~ 405 (548)
T 2d1s_A 329 VARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKS---LGPNRRGEVCVKGPMLMKGYVN 405 (548)
T ss_dssp HHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETT
T ss_pred HHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCcc---CCCCCCeEEEECCHHHhhhhcC
Confidence 99888 6889999999999887766554455678999999999999999666654 7899999999999999999999
Q ss_pred CCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCc
Q 006354 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKL 623 (649)
Q Consensus 544 ~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~ 623 (649)
+|+.|++.|. .+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..
T Consensus 406 ~~~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~V~~~~~~~~ 479 (548)
T 2d1s_A 406 NPEATKELID--EE--GWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIF-DAGVAGVPDPVA 479 (548)
T ss_dssp CHHHHHHHBC--TT--SCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEE-EEEEEEEEETTT
T ss_pred ChHHhhhccc--CC--cEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEEcCCC
Confidence 9999999996 56 89999999999999999999999999998 599999999999999999999 999999998877
Q ss_pred ccchhhhh
Q 006354 624 ASSTKIFQ 631 (649)
Q Consensus 624 ~~~~~~~~ 631 (649)
|+.+.++.
T Consensus 480 g~~~~a~v 487 (548)
T 2d1s_A 480 GELPGAVV 487 (548)
T ss_dssp EEEEEEEE
T ss_pred CeeeEEEE
Confidence 76555444
No 10
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.3e-71 Score=617.11 Aligned_cols=460 Identities=18% Similarity=0.206 Sum_probs=364.7
Q ss_pred ccCCCCCCCCCCccccccCCCCcccccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCce
Q 006354 50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE 129 (649)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 129 (649)
|..+..+...+++.+....+ ....+++...|+.++|+++++++|+++|+.+ +++
T Consensus 10 ~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~~----------- 63 (563)
T 1amu_A 10 IHAQNKNGTHEEEQYLFAVN---NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE----------- 63 (563)
T ss_dssp -------CCCHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------
T ss_pred ccccccCCHHHHHHHHHHhC---CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEe------------CCc-----------
Confidence 56667777777766554333 2334455567999999999999999999986 333
Q ss_pred EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEEC
Q 006354 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (649)
Q Consensus 130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (649)
.+||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~ 143 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 143 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhccCCCccEEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 006354 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL 289 (649)
Q Consensus 210 ~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~ 289 (649)
.+....+..+. ....+..++... +.. ........+..++|+|+|+|||||||.
T Consensus 144 ~~~~~~~~~~~----~~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~ 196 (563)
T 1amu_A 144 KHLVHLIHNIQ----FNGQVEIFEEDT---------------------IKI--REGTNLHVPSKSTDLAYVIYTSGTTGN 196 (563)
T ss_dssp GGGHHHHTTSC----CCSEEEECCCST---------------------TTT--SCCSCCCCCCCTTSEEEEEEEC-----
T ss_pred Cchhhhhhhcc----ccCceeeecchh---------------------hcc--ccCccCCCCCCCCCeEEEEECCCCCCC
Confidence 87655443221 111222222110 000 011111234567899999999999999
Q ss_pred cceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccce
Q 006354 290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369 (649)
Q Consensus 290 PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~ 369 (649)
||||++||+++.+.+.+....+ ++.++|++++++|++|+.++..++.+++.|+++++.+.....+. ..+...++
T Consensus 197 PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~i~ 270 (563)
T 1amu_A 197 PKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDF-----VKFEQYIN 270 (563)
T ss_dssp CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCH-----HHHHHHHH
T ss_pred CcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCH-----HHHHHHHH
Confidence 9999999999999988888888 89999999999999999999888899999999998543221111 12233389
Q ss_pred eecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEE
Q 006354 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449 (649)
Q Consensus 370 ~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~ 449 (649)
++++|++.++|+++..+... ..++||.
T Consensus 271 ~~~~t~~~~~P~~~~~l~~~-----------------------------------------------------~~~~lr~ 297 (563)
T 1amu_A 271 QKEITVITLPPTYVVHLDPE-----------------------------------------------------RILSIQT 297 (563)
T ss_dssp HTTCCEEEECHHHHTTSCTT-----------------------------------------------------TCCSCSE
T ss_pred HcCCcEEEeCHHHHHHHHhc-----------------------------------------------------ccccccE
Confidence 99999999999998766321 0148999
Q ss_pred EEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCC---CCCCccCCCcccceEEEEecCCCCcccCCCCCC
Q 006354 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526 (649)
Q Consensus 450 i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~ 526 (649)
+++||+++++++.+.|.+. +++++.||+||++.+++...... ....++|+|+|+++++|+| +++.. +++|+
T Consensus 298 ~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~---~~~g~ 371 (563)
T 1amu_A 298 LITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL---KSVGE 371 (563)
T ss_dssp EEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB---CCTTC
T ss_pred EEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCC---CCCCC
Confidence 9999999999999998874 88999999999988766543222 2457899999999999999 55544 78999
Q ss_pred ccEEEEccccccccccCCCccchhhhccCC--CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhc
Q 006354 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTT 604 (649)
Q Consensus 527 ~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~ 604 (649)
.|||+|+|++++.|||++|+.|+++|..++ ++.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.
T Consensus 372 ~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~ 450 (563)
T 1amu_A 372 AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILL 450 (563)
T ss_dssp EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHT
T ss_pred cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHH
Confidence 999999999999999999999999996431 34579999999999999999999999999998 599999999999999
Q ss_pred cCcccccceEEEecCCCCcccchhh
Q 006354 605 VLPLLFHHIRLWRNGPMKLASSTKI 629 (649)
Q Consensus 605 ~~p~V~~~~~V~g~~~~~~~~~~~~ 629 (649)
+||+|. +|+|++.++...++.+.+
T Consensus 451 ~~p~V~-~a~Vv~~~~~~~~~~~~a 474 (563)
T 1amu_A 451 KHMYIS-ETAVSVHKDHQEQPYLCA 474 (563)
T ss_dssp TSTTEE-EEEEEEEECTTSCEEEEE
T ss_pred hCCCcc-eEEEEEeecCCCCeEEEE
Confidence 999999 999999988776654433
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.7e-71 Score=607.99 Aligned_cols=439 Identities=23% Similarity=0.339 Sum_probs=364.3
Q ss_pred HHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC
Q 006354 86 ALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165 (649)
Q Consensus 86 ~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 165 (649)
++|+++++++|+++|+.... .+|+ ++||+||.++++++|++|+++|+++||+|+|+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~---------~~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET---------AAGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE---------TTCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEec---------CCCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 47899999999999998632 0343 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCCCCC
Q 006354 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245 (649)
Q Consensus 166 ~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 245 (649)
+++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+..+...... .++.++....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 133 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------- 133 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC--------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc--------
Confidence 999999999999999999999999999999999999999999998876655544333221 2333222110
Q ss_pred CCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccC
Q 006354 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325 (649)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~p 325 (649)
..+.+.... ...........++|+|+|+|||||||.||||++||+++.+.+......+ +++++|++++.+|
T Consensus 134 -------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p 204 (503)
T 4fuq_A 134 -------GSLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALP 204 (503)
T ss_dssp -------SHHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred -------cccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCC
Confidence 112222221 1222233456789999999999999999999999999999999999888 9999999999999
Q ss_pred hHHHHHHHH-HHHHHHhCceEEeC---CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchh
Q 006354 326 LAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (649)
Q Consensus 326 l~h~~~~~~-~~~~l~~G~~l~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 401 (649)
++|.+++.. .+.+++.|+++++. ++..+.+. ++ ++|+++++|+++..+.+....
T Consensus 205 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~--------- 262 (503)
T 4fuq_A 205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRL--------- 262 (503)
T ss_dssp SSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTC---------
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCc---------
Confidence 999998755 67789999999884 44444444 65 899999999999988753110
Q ss_pred HHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCccc
Q 006354 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (649)
Q Consensus 402 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE 481 (649)
.....+++|.+++||+++++++.+.|.+.++++++|.||+||
T Consensus 263 --------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 263 --------------------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp --------------------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred --------------------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 001124899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccc
Q 006354 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561 (649)
Q Consensus 482 ~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w 561 (649)
++..++.........+++|+|+||++++|+|++++.. +++|+.|||+|+|++++.|||++|+.|++.|. .+ ||
T Consensus 305 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~--~~--g~ 377 (503)
T 4fuq_A 305 TNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKE---LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFR--DD--GF 377 (503)
T ss_dssp TEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHTBC--TT--SC
T ss_pred cCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCC---CcCCCceEEEEECCchhhhhcCChhhhHhhhC--CC--CC
Confidence 9887665544555678999999999999999776654 78999999999999999999999999999996 56 89
Q ss_pred eeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS 632 (649)
Q Consensus 562 ~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~ 632 (649)
|+|||+|++|+||+|+|+||+||+||++ |++|+|.|||++|.+||+|. +|+|++.+++..++.+.++..
T Consensus 378 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~-G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a~v~ 446 (503)
T 4fuq_A 378 FITGDLGKIDERGYVHILGRGKDLVITG-GFNVYPKEIESEIDAMPGVV-ESAVIGVPHADFGEGVTAVVV 446 (503)
T ss_dssp EEEEEEEEECTTCEEEECCSSTTCEEET-TEEECHHHHHHHHHTSTTEE-EEEEEEEEETTTEEEEEEEEE
T ss_pred eEcceeEEEcCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCee-EEEEEEeEchhcCceeEEEEE
Confidence 9999999999999999999999999985 99999999999999999999 999999988877765554443
No 12
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=8.2e-71 Score=610.49 Aligned_cols=441 Identities=21% Similarity=0.251 Sum_probs=365.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|+++++++|+++|+.+ ++ +.+||+||.++++++|++|+++|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36999999999999999999986 33 36999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEecCC
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND 235 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~~~~ 235 (649)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+.. ..+..+....+.++.++..++.
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987532 2333343445566666554321
Q ss_pred CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (649)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 315 (649)
.. +.++..... .........++|+|+|+|||||||.||||++||+++++.+......+ +++
T Consensus 161 ~~-----------------~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~ 221 (539)
T 1mdb_A 161 EE-----------------FLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLD 221 (539)
T ss_dssp TT-----------------SEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCC
T ss_pred cc-----------------hhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCC
Confidence 10 111111111 11122445789999999999999999999999999999998888887 889
Q ss_pred CCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354 316 RSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (649)
Q Consensus 316 ~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~ 390 (649)
++|++++.+|++|.+++.. ++.+++.|+++++.+ +..+.+. ++++++|+++++|+++..+.+..
T Consensus 222 ~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 222 HSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHH
T ss_pred CCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCc
Confidence 9999999999999999874 788999999999943 3444444 99999999999999999987643
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (649)
Q Consensus 391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~ 470 (649)
... ....++||.+++||+++++++.+.+.+.+|
T Consensus 291 ~~~-----------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 323 (539)
T 1mdb_A 291 SSR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFG 323 (539)
T ss_dssp HHC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTC
T ss_pred ccc-----------------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhC
Confidence 210 011258999999999999999999998889
Q ss_pred CccccccCcccccccccccCCC-CCCCCccCCCccc-ceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354 471 APIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (649)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~p~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (649)
+++++.||+||++..++..... ....+++|+|+++ .+++|+| +++.. +++|+.|||+|+|++++.|||++|+.|
T Consensus 324 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t 399 (539)
T 1mdb_A 324 CTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHN 399 (539)
T ss_dssp SEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHH
T ss_pred CcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCC---CcCCCcceEEeeCcccchhhcCChhhh
Confidence 9999999999976443322111 1234789999976 4899999 55543 789999999999999999999999999
Q ss_pred hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK 628 (649)
Q Consensus 549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~ 628 (649)
+++|. .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..|+.+.
T Consensus 400 ~~~f~--~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~g~~~~ 473 (539)
T 1mdb_A 400 AASFT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVH-DAAMVSMPDQFLGERSC 473 (539)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEE
T ss_pred hhhcc--CC--CCeecCceEEECCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEeccccccCceEE
Confidence 99997 56 89999999999999999999999999997 599999999999999999999 99999998887765554
Q ss_pred hhh
Q 006354 629 IFQ 631 (649)
Q Consensus 629 ~~~ 631 (649)
++.
T Consensus 474 a~v 476 (539)
T 1mdb_A 474 VFI 476 (539)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.1e-70 Score=603.53 Aligned_cols=439 Identities=22% Similarity=0.303 Sum_probs=326.3
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|+++|+++||++|+.+ +++ ++||+||.++++++|++|+++|+++||+|+|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36999999999999999999986 443 6999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~ 240 (649)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+.......+.++.++.+++...
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 138 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--- 138 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS---
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc---
Confidence 99999999999999999999999999999999999999999999999999988876666666777777777654211
Q ss_pred CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (649)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 320 (649)
.+.++...............++|+++|+|||||||.||||++||+++++.+.+....+ +++++|++
T Consensus 139 -------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 204 (509)
T 3ivr_A 139 -------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVN 204 (509)
T ss_dssp -------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEE
T ss_pred -------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEE
Confidence 1112222122222334566789999999999999999999999999999999999888 99999999
Q ss_pred EEccChHHHHHHHHHHHHHHhCceEEe---CCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354 321 LAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (649)
Q Consensus 321 l~~~pl~h~~~~~~~~~~l~~G~~l~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 397 (649)
++++|++|++++...+.++..|++.++ +++..+.+. ++++++|+++++|+++..+.+....
T Consensus 205 l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~----- 268 (509)
T 3ivr_A 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAAP----- 268 (509)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCCG-----
T ss_pred EEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhcccc-----
Confidence 999999999999887776666666655 344444444 9999999999999999998764200
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA 476 (649)
Q Consensus 398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~ 476 (649)
...+++|.++.+|++ ++.+.+.+.+ +++++|.
T Consensus 269 --------------------------------------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 269 --------------------------------------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp --------------------------------------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred --------------------------------------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 011489999999988 7777777777 8999999
Q ss_pred cCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (649)
Q Consensus 477 YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (649)
||+||++++++.....+ ...++|+|+++++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++.| .
T Consensus 302 YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~ 373 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRP---LPPGEVGEIVLRGPTVFKGYWNNAAATQHAF---R 373 (509)
T ss_dssp EEEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCEETTCHHHHHHHT---G
T ss_pred cCccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEecCCccccccCCHHHhHHHh---h
Confidence 99999998777654432 234599999999999999 45543 7899999999999999999999999999999 5
Q ss_pred CcccceeeCcEEEEccCCeEEEEecC--CCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhhhh
Q 006354 557 RGMCWFYTGDIGQVYPDGCLEIIDRK--KDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSCV 634 (649)
Q Consensus 557 ~~~~w~~TGDlg~~~~dG~l~i~GR~--dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~~~ 634 (649)
+ |||+|||+|++++||+++|+||. ||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++....
T Consensus 374 ~--g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a~v~~~ 449 (509)
T 3ivr_A 374 N--GWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIA-DAVVIGVPDPQWSEAIKAVCVCK 449 (509)
T ss_dssp G--GSEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred c--CCcccccEEEECCCceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCce-eEEEEeccccccCcEEEEEEEeC
Confidence 6 89999999999999999999999 999997 599999999999999999999 99999999999888777766654
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.1e-70 Score=601.36 Aligned_cols=434 Identities=20% Similarity=0.273 Sum_probs=355.2
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (649)
Q Consensus 82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (649)
+|+.++|+++++++||++|+.+.. ++ +++||+||.++++++|++|+++|+++||+|+|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~ 60 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 589999999999999999998621 13 379999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEE--CchhHHHH-HHhhccCCCccEEEEecCCCCC
Q 006354 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC--DSKQLKKL-SAVSSSLKTIKNVIYFENDGSE 238 (649)
Q Consensus 162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~l-~~~~~~~~~~~~ii~~~~~~~~ 238 (649)
++|++++++++|||+++|+++||++|.++++++.+++++++++++|+ +.+..+.+ ... +.++ ++
T Consensus 61 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~-------- 127 (504)
T 1t5h_X 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II-------- 127 (504)
T ss_dssp CCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE--------
T ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE--------
Confidence 99999999999999999999999999999999999999999999999 76655544 221 1222 22
Q ss_pred ccCCCCCCCCCceEeehHHHHhcCC----CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCC
Q 006354 239 KDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (649)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 314 (649)
.++++..... ..........++|+|+|+|||||||.||||++||+++.+.+......+ ++
T Consensus 128 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 191 (504)
T 1t5h_X 128 ---------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL 191 (504)
T ss_dssp ---------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred ---------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence 2222221110 111112345689999999999999999999999999999998888777 77
Q ss_pred --CCCcEEEEccChHHHHHHH-HHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354 315 --GRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (649)
Q Consensus 315 --~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 388 (649)
+++|++++.+|++|++++. .++.++..|+++++.+ |..+.+. ++++++|+++++|++++.+.+
T Consensus 192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 260 (504)
T 1t5h_X 192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA 260 (504)
T ss_dssp CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence 8899999999999999985 4788999999999943 4444444 999999999999999999876
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (649)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~ 468 (649)
....... ....++||.+++||+++++++.+.|++.
T Consensus 261 ~~~~~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 261 AAAHAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHCCTTC---------------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhccccc---------------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 4210000 0012489999999999999999999999
Q ss_pred cCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEc-cccccccccCCCcc
Q 006354 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK 547 (649)
Q Consensus 469 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~~~~ 547 (649)
+++.++|.||+||++. +.... ....+++|.|.++++++|+| +++.....+++|+.|||+|+ |++++.||+++|+.
T Consensus 296 ~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp CCSEEEEEEEETTTEE-EEEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred cCcceeeeeccccccc-ccccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence 9999999999999833 22222 34568899999999999999 44422234889999999999 99999999999999
Q ss_pred chhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST 627 (649)
Q Consensus 548 t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~ 627 (649)
|++.| .+ |||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..|+.+
T Consensus 372 t~~~f---~~--g~~~TGDlg~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~g~~~ 444 (504)
T 1t5h_X 372 TAEKL---QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVT-EVVVIGLADQRWGQSV 444 (504)
T ss_dssp HHHHE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEE-EEEEEEEECSSSSEEE
T ss_pred hhhhh---cC--CccccCcEEEECCCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEeecCCCCcEE
Confidence 99999 56 89999999999999999999999999997 599999999999999999999 9999999988877665
Q ss_pred hhhhh
Q 006354 628 KIFQS 632 (649)
Q Consensus 628 ~~~~~ 632 (649)
.++..
T Consensus 445 ~a~vv 449 (504)
T 1t5h_X 445 TACVV 449 (504)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 15
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.7e-71 Score=619.28 Aligned_cols=429 Identities=17% Similarity=0.155 Sum_probs=350.0
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (649)
Q Consensus 80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~ 159 (649)
...|++++|+++|+++||++|+.+ .+ +.+||+||.++++++|++|+++|+++||+|+
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~ 81 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLG 81 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 347999999999999999999986 22 2699999999999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (649)
Q Consensus 160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~ 239 (649)
|+++|++++++++|||+++|+++||+||.++.+++.++++++++++++++....... ..+.
T Consensus 82 i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~------------ 142 (620)
T 4dg8_A 82 VYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLP------------ 142 (620)
T ss_dssp EESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSC------------
T ss_pred EEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCc------------
Confidence 999999999999999999999999999999999999999999999999765432110 0010
Q ss_pred cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (649)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 319 (649)
...+.... ............++|+|||+|||||||.||||+++|+++.+.+.. ...+ .+.++|+
T Consensus 143 ------------~~~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~ 206 (620)
T 4dg8_A 143 ------------CVPVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMR 206 (620)
T ss_dssp ------------EEEGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCE
T ss_pred ------------eeeeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCE
Confidence 11111100 001111223456899999999999999999999999999887765 4445 7889999
Q ss_pred EEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcc
Q 006354 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (649)
Q Consensus 320 ~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~ 399 (649)
+++++|++|+.++..++.+|+.|+++++.+...+ + +..+...++++++|+++++|++++.+.+....
T Consensus 207 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------- 273 (620)
T 4dg8_A 207 FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPL-D-----PGVLRQLIGERGADSAWLTASLFNTLVDLDPD------- 273 (620)
T ss_dssp EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSC-C-----HHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG-------
T ss_pred EEEECccCHHHHHHHHHHHHhcCCEEEeCccccC-C-----HHHHHHHHHHhCCcEEEccHHHHHHHHhcChh-------
Confidence 9999999999999999999999999998532111 1 12233339999999999999999988652100
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccC
Q 006354 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (649)
Q Consensus 400 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG 478 (649)
..++||.+++||++++++..+.+...+ +++++|.||
T Consensus 274 -------------------------------------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 310 (620)
T 4dg8_A 274 -------------------------------------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG 310 (620)
T ss_dssp -------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred -------------------------------------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence 014899999999999988876665554 899999999
Q ss_pred cccccccccccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhcc
Q 006354 479 LTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (649)
Q Consensus 479 ~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (649)
+||++++++..... .....++|+|++|++++|+| +++.. .+++|+.|||||+|+++++||+|+|+.|+++|..
T Consensus 311 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~ 387 (620)
T 4dg8_A 311 PTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQE--IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVE 387 (620)
T ss_dssp CGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCB--CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEE
T ss_pred hhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCC--CCCCCCceEEEEeccccccccCCChhhhhhhhcc
Confidence 99999877654332 23457999999999999999 44443 2678999999999999999999999999999974
Q ss_pred CC-Ccc--cceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccch
Q 006354 555 DE-RGM--CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASST 627 (649)
Q Consensus 555 ~~-~~~--~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~ 627 (649)
++ ++. +||||||+|++++||+|+|+||+||+||++ |+||+|.|||++|.+||+|. +|+|++.++...++.+
T Consensus 388 ~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~-G~ri~~~eIE~~l~~~p~V~-~a~Vv~~~~~~~~~lv 461 (620)
T 4dg8_A 388 LPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLN-GYRLDLPALEQRFRRQPGIL-DCALLVRERNGVKQLL 461 (620)
T ss_dssp EEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEET-TEEEEHHHHHHHHHTSTTEE-EEEEEEEEETTEEEEE
T ss_pred CCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEEC-CEEcCHHHHHHHHHhCCCcc-EEEEEEEeCCCceEEE
Confidence 32 122 799999999999999999999999999995 99999999999999999999 9999998877655444
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.7e-71 Score=614.42 Aligned_cols=437 Identities=21% Similarity=0.235 Sum_probs=313.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 006354 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (649)
Q Consensus 79 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V 158 (649)
+...+++++|+++++++||++|+++ +++ .+||+||.++++++|++|+++|+++||+|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 128 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLH------------EAD-----------ELTYGALNERANRLAHRLVGLGVAPGTLV 128 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEEC------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 333 69999999999999999999999999999
Q ss_pred EEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCC
Q 006354 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (649)
Q Consensus 159 ~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~ 238 (649)
+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+ .....++..+..
T Consensus 129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~--- 198 (570)
T 4gr5_A 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEA--- 198 (570)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC-----
T ss_pred EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeeccc---
Confidence 9999999999999999999999999999999999999999999999999997653322 122211111100
Q ss_pred ccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCc
Q 006354 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (649)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d 318 (649)
..............++|+|+|+|||||||.||||++||+++.+.+.. ...+ .++++|
T Consensus 199 ---------------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d 255 (570)
T 4gr5_A 199 ---------------------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDE 255 (570)
T ss_dssp --------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTC
T ss_pred ---------------------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCC
Confidence 00011112234567899999999999999999999999999876654 3344 788999
Q ss_pred EEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (649)
Q Consensus 319 ~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 398 (649)
++++++|++|..+...++.+++.|+++++.+.... + +..+...++++++|++.++|++++.+.+....
T Consensus 256 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------ 323 (570)
T 4gr5_A 256 VFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP-D-----PLEIGELVARHGVTMLQLSASLFNFLVDEVPE------ 323 (570)
T ss_dssp EEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC-C-----HHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC-C-----HHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------
Confidence 99999999998777778889999999998443211 1 11223339999999999999999988753211
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcccccc
Q 006354 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (649)
Q Consensus 399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~Y 477 (649)
..++||.+++||+++++++.+.+.+.+ ++++++.|
T Consensus 324 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 359 (570)
T 4gr5_A 324 --------------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY 359 (570)
T ss_dssp --------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred --------------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence 014899999999999999888777766 89999999
Q ss_pred CcccccccccccCCC----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhc
Q 006354 478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (649)
Q Consensus 478 G~TE~~~~~~~~~~~----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (649)
|+||++++++..... .....++|+|++|++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|+++|.
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~---~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 435 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKP---AANGALGELYVAGAGLAHGYVSRPALTAERFV 435 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCC---CCCCCcEEEEEeecccchhcCCCchhhhcccc
Confidence 999998877654322 23346799999999999999 55544 78999999999999999999999999999997
Q ss_pred cC----CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354 554 VD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI 629 (649)
Q Consensus 554 ~~----~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~ 629 (649)
.+ .++.|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.+
T Consensus 436 ~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~-~a~Vv~~~~~~~~~~~~a 513 (570)
T 4gr5_A 436 ADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVR-QAAVLAQDSRLGDKQLVA 513 (570)
T ss_dssp ECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------------
T ss_pred cCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcc-eEEEEEeeCCCCCeEEEE
Confidence 43 134589999999999999999999999999998 699999999999999999999 999999998888877766
Q ss_pred hhhh
Q 006354 630 FQSC 633 (649)
Q Consensus 630 ~~~~ 633 (649)
+...
T Consensus 514 ~vv~ 517 (570)
T 4gr5_A 514 YVVA 517 (570)
T ss_dssp ----
T ss_pred EEEe
Confidence 6554
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=6.3e-70 Score=606.52 Aligned_cols=445 Identities=16% Similarity=0.248 Sum_probs=373.4
Q ss_pred CCHHHHHHHHHHh-----CCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCC
Q 006354 82 STMAALFEQSCKS-----HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVD 155 (649)
Q Consensus 82 ~tl~~~~~~~a~~-----~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~g 155 (649)
+++.++|++++++ +|+++|+.+. ++. +..+++||+||.++++++|++|+++ |+++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~-----------~~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~g 99 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWV-----------NGK-------GKELMWNFRELSENSQQAANVLSGACGLQRG 99 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEE-----------CSS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTT
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEE-----------cCC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCCC
Confidence 5678999999999 9999999874 211 1225799999999999999999999 99999
Q ss_pred CEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCC
Q 006354 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (649)
Q Consensus 156 d~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~ 235 (649)
|+|+|+++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+..+.+..+....+.++.++.+++.
T Consensus 100 d~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
T 3c5e_A 100 DRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK 179 (570)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999998888887776667777777776542
Q ss_pred CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHH--HHHHHHhhCCC
Q 006354 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA--TAAAIKTLIPN 313 (649)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~ 313 (649)
... ...+++++....... .......++|+|+|+|||||||.||||++||+ ++. ..... ..+ +
T Consensus 180 ~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~ 243 (570)
T 3c5e_A 180 SCD------------GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-G 243 (570)
T ss_dssp CCT------------TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-S
T ss_pred Ccc------------ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-C
Confidence 110 124566665443322 22345678999999999999999999999999 554 33333 555 8
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC-----cccccccchhhccCccccceeecceEEEechHHHHHHH
Q 006354 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR 387 (649)
Q Consensus 314 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~-----~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 387 (649)
+.++|++++++|++|++++.. ++.++..|+++++.+ +..+.+. ++++++|+++++|++++.+.
T Consensus 244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-----------LSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHH
T ss_pred CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHH
Confidence 889999999999999999874 778899999999843 3334343 99999999999999999886
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHh
Q 006354 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (649)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~ 467 (649)
+.. . .....++||.+++||+++++++.+.|.+
T Consensus 313 ~~~---~---------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 344 (570)
T 3c5e_A 313 QQD---L---------------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRA 344 (570)
T ss_dssp TSC---T---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred hcc---c---------------------------------------------cccccccceEEEEcCCcCCHHHHHHHHH
Confidence 520 0 0011258999999999999999999999
Q ss_pred hcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEc-----ccccccccc
Q 006354 468 CMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-----GFNVTAGYF 542 (649)
Q Consensus 468 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~-----g~~v~~gY~ 542 (649)
.+|+++++.||+||++..++.........+++|+|+|+++++|+| +++.. +++|+.|||+|+ |++++.|||
T Consensus 345 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~---~~~G~~GEl~v~~~~~~g~~v~~GY~ 420 (570)
T 3c5e_A 345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNV---LPPGTEGDIGIRVKPIRPIGIFSGYV 420 (570)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCB---CCTTCCEEEEEECSSBCCTTCCCEET
T ss_pred HhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCC---CCCCCCCeeEEeccCCCCchhhcccc
Confidence 889999999999999877666554455678999999999999999 55554 789999999999 999999999
Q ss_pred CCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK 622 (649)
Q Consensus 543 ~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~ 622 (649)
++|+.|++.| .+ +||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++.
T Consensus 421 ~~~~~t~~~f---~~--~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~-~a~Vv~~~~~~ 493 (570)
T 3c5e_A 421 DNPDKTAANI---RG--DFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVV-ETAVISSPDPV 493 (570)
T ss_dssp TCHHHHHHTE---ET--TEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEE-EEEEEEEEETT
T ss_pred CChhHhhhhh---cC--CccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEeeeCCC
Confidence 9999999999 45 89999999999999999999999999997 599999999999999999999 99999998877
Q ss_pred cccchhhh
Q 006354 623 LASSTKIF 630 (649)
Q Consensus 623 ~~~~~~~~ 630 (649)
.++.+.++
T Consensus 494 ~g~~~~a~ 501 (570)
T 3c5e_A 494 RGEVVKAF 501 (570)
T ss_dssp TEEEEEEE
T ss_pred CCeEEEEE
Confidence 66554443
No 18
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.8e-70 Score=614.92 Aligned_cols=470 Identities=17% Similarity=0.204 Sum_probs=376.0
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (649)
Q Consensus 82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (649)
++++++|+++++++||++|+++.. +. .+..+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~----------~~-------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEG----------DD-------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEEC----------SS-------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHhccCCCceEEEEEc----------CC-------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 578999999999999999999742 10 1233579999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH---------HHHHHhhccCC--CccEEE
Q 006354 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK--TIKNVI 230 (649)
Q Consensus 162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~~~~ii 230 (649)
++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++... +.+.++....+ .++.++
T Consensus 139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 218 (652)
T 1pg4_A 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218 (652)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999986542 23444433332 456777
Q ss_pred EecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHH-HHHh
Q 006354 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKT 309 (649)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~-~~~~ 309 (649)
.++...... ... .....+|+++...... ........++|++||+|||||||.||||++||++++..+. ....
T Consensus 219 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 291 (652)
T 1pg4_A 219 VLKRTGSDI-----DWQ-EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291 (652)
T ss_dssp EECSSCCCC-----CCC-BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred EEeCCCCcc-----ccc-CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence 765432111 000 1123567777654322 1223445689999999999999999999999999887764 4455
Q ss_pred hCCCCCCCcEEEEccChHHHHHHH-HHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354 310 LIPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (649)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 388 (649)
.+ .+.++|++++++|++|+++.. .++.+|+.|+++++.+....... +..++..++++++|+++++|++++.+.+
T Consensus 292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT----PARMCQVVDKHQVNILYTAPTAIRALMA 366 (652)
T ss_dssp HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 67 889999999999999999984 47889999999998442111111 1223344999999999999999998875
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (649)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~ 468 (649)
..... .+....++||.+++||+++++++.+++.+.
T Consensus 367 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 401 (652)
T 1pg4_A 367 EGDKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKK 401 (652)
T ss_dssp TGGGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred cCccc---------------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHH
Confidence 31100 001123589999999999999999999988
Q ss_pred cC---CccccccCcccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcc--ccccccc
Q 006354 469 MG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY 541 (649)
Q Consensus 469 ~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY 541 (649)
+| +++++.||+||+++.++..... ....+++|+|++|++++|+| +++.. ++.|+.|||+|+| |+++.||
T Consensus 402 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~---v~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 402 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSCCTTCCCEE
T ss_pred hCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCC---cCCCceEEEEEccCCCchhhhh
Confidence 87 8999999999998776655432 34568999999999999999 55554 6788999999999 7999999
Q ss_pred cCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCC
Q 006354 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPM 621 (649)
Q Consensus 542 ~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~ 621 (649)
|++|+.+.+.|....+ |||+|||+|++|+||+|+|+||+||+||++ |+||+|.|||++|.+||+|. +|+|+|.+++
T Consensus 478 ~~~~e~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~-G~rI~~~eIE~~l~~~p~V~-ea~Vvg~~~~ 553 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIA-EAAVVGIPHA 553 (652)
T ss_dssp TTCHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEET-TEEEEHHHHHHHHHHSTTEE-EEEEEEEEET
T ss_pred cCCHHHHHhhhhhcCC--CEEECCcEEEEcCCCcEEEEecCCCEEEEC-CEEECHHHHHHHHHhCCCcc-eEEEEEEEcC
Confidence 9999999888753234 899999999999999999999999999985 99999999999999999999 9999999888
Q ss_pred Ccccchhhhhhh
Q 006354 622 KLASSTKIFQSC 633 (649)
Q Consensus 622 ~~~~~~~~~~~~ 633 (649)
..|+.+.++..+
T Consensus 554 ~~g~~l~a~Vv~ 565 (652)
T 1pg4_A 554 IKGQAIYAYVTL 565 (652)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCCeEEEEEEEE
Confidence 777655555443
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-69 Score=611.70 Aligned_cols=473 Identities=15% Similarity=0.156 Sum_probs=379.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAA 159 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~ 159 (649)
.++++++|+++++++||++|+++.. + . .+..+++||+||.++++++|++|+ ++|+++||+|+
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~ 143 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFEG----------D-E------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA 143 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEEC----------S-S------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred ccHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 3688999999999999999999742 1 0 123357999999999999999999 99999999999
Q ss_pred EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH---------HHHHHhhccCCCccEEE
Q 006354 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVI 230 (649)
Q Consensus 160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~ii 230 (649)
|+++|++++++++|||+++|++++|+++.++++++.++|++++++++|+++... +.+.++....+.++.++
T Consensus 144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 223 (663)
T 1ry2_A 144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL 223 (663)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence 999999999999999999999999999999999999999999999999976542 34455555556677787
Q ss_pred EecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHH-HHh
Q 006354 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKT 309 (649)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~ 309 (649)
+++....... .. ......+|+++...... ..+.....++|++||+|||||||.||||++||++++..+.. ...
T Consensus 224 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 297 (663)
T 1ry2_A 224 VYRKTNNPSV----AF-HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297 (663)
T ss_dssp EECSSCCSSC----CC-CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH
T ss_pred EEecCCCCcc----cc-CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH
Confidence 7764321000 00 01123567776654322 22334557899999999999999999999999998877644 445
Q ss_pred hCCCCCCCcEEEEccChHHHHHHH-HHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354 310 LIPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (649)
Q Consensus 310 ~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 388 (649)
.+ .+.++|++++++|++|+++.. .++.+|+.|+++++.+....... ...++..|+++++|+++++|++++.+.+
T Consensus 298 ~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 372 (663)
T 1ry2_A 298 TF-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKR 372 (663)
T ss_dssp HS-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTT
T ss_pred hc-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC----HHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 66 889999999999999999985 47889999999998432111111 1223444999999999999999988864
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (649)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~ 468 (649)
..... .+....++||.+++||+++++++.+++.+.
T Consensus 373 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 373 AGDSY---------------------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp SCTTS---------------------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred cCccc---------------------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 21000 001122589999999999999999999998
Q ss_pred cC---CccccccCcccccccccccCC---CCCCCCccCCCcccceEEEEecCCCCcccCCCC-CCccEEEEcc--ccccc
Q 006354 469 MG---APIGQAYGLTETCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP-MPRGEIVVGG--FNVTA 539 (649)
Q Consensus 469 ~~---~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~-g~~GEl~v~g--~~v~~ 539 (649)
+| +++++.||+||++..++.... ...+.+++|+|++|++++|+|.+++.. ++. |+.|||+|+| |+++.
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~---v~~~g~~Gel~i~g~~p~~~~ 484 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEE---LNTSHAEGVLAVKAAWPSFAR 484 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTC---EECSSCEEEEEESSCCTTSCC
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCc---CCCCCcceEEEEecCCCchhc
Confidence 87 899999999999876665433 234568999999999999999536654 445 8899999999 58999
Q ss_pred cccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecC
Q 006354 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNG 619 (649)
Q Consensus 540 gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~ 619 (649)
|||++|+.|.+.|....+ |||+|||+|++|+||+|+|+||+||+||++ |+||+|.|||++|.+||.|. +|+|+|.+
T Consensus 485 gy~~~~~~~~~~~~~~~~--g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~-G~rI~~~eIE~~l~~~p~V~-ea~Vvg~~ 560 (663)
T 1ry2_A 485 TIWKNHDRYLDTYLNPYP--GYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVA-ECAVVGFN 560 (663)
T ss_dssp EETTCHHHHHHHHTSSST--TSEEEEEEEEECTTCCEEECSCTTSCBCSS-SCCBCHHHHHHHHHSSTTEE-EEEEECCC
T ss_pred ccccChHHHHHhhhcCCC--CEEEcCCEEEEcCCCCEEEEeecCCEEEEC-CEEcCHHHHHHHHHhCCCcc-eEEEEEEe
Confidence 999999999998863234 899999999999999999999999999985 99999999999999999999 99999999
Q ss_pred CCCcccchhhhhhh
Q 006354 620 PMKLASSTKIFQSC 633 (649)
Q Consensus 620 ~~~~~~~~~~~~~~ 633 (649)
++..|+.+.+++.+
T Consensus 561 ~~~~g~~~~a~Vv~ 574 (663)
T 1ry2_A 561 DDLTGQAVAAFVVL 574 (663)
T ss_dssp CCTTSCCCEEEEEE
T ss_pred cCCCCeEEEEEEEE
Confidence 88877766665543
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.1e-69 Score=607.24 Aligned_cols=448 Identities=17% Similarity=0.222 Sum_probs=369.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 006354 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (649)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~ 157 (649)
+....|++++|+++++ ||++|+++ ++ +.+||+||.++++++|++|+++|+++||+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 77 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVID------------GE-----------RQLSYRELNQAADNLACSLRRQGIKPGET 77 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEec------------CC-----------ceEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3455799999999988 99999986 33 36999999999999999999999999999
Q ss_pred EEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhH-----HHHHHhhccCCCccEEEEe
Q 006354 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYF 232 (649)
Q Consensus 158 V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~ii~~ 232 (649)
|+|+++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.... ..+.......+.++.+...
T Consensus 78 V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (617)
T 3rg2_A 78 ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157 (617)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999987654 3333334445555655554
Q ss_pred cCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCC
Q 006354 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312 (649)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~ 312 (649)
+.... ..+.+....... .....+..++++|||+|||||||.||||+++|+++++.+.+....+
T Consensus 158 ~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~- 220 (617)
T 3rg2_A 158 NDSGE---------------HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC- 220 (617)
T ss_dssp TCCST---------------TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-
T ss_pred ccccc---------------cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-
Confidence 43221 123333332222 2223455789999999999999999999999999999999998888
Q ss_pred CCCCCcEEEEccChHHHHHHHH--HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHH
Q 006354 313 NPGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (649)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~ 390 (649)
++.++|++++++|++|.+++.. ++.+++.|+++++.+..... .+...++++++|++.++|+++..+.+..
T Consensus 221 ~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~--------~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSAT--------LCFPLIEKHQVNVTALVPPAVSLWLQAL 292 (617)
T ss_dssp TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHH--------HHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHH--------HHHHHHHHhCCcEEEcchHHHHHHHHhh
Confidence 8999999999999999998864 78899999999994432111 1222389999999999999999987753
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC
Q 006354 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (649)
Q Consensus 391 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~ 470 (649)
...... ...++||.+++||+++++++.+.|...++
T Consensus 293 ~~~~~~---------------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 327 (617)
T 3rg2_A 293 IEGESR---------------------------------------------AQLASLKLLQVGGARLSATLAARIPAEIG 327 (617)
T ss_dssp HTTCCT---------------------------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred hccccc---------------------------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhC
Confidence 321100 01148999999999999999999999889
Q ss_pred CccccccCcccccccccccCCCC-CCCCccCCCc-ccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354 471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (649)
Q Consensus 471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (649)
++++|.||+||++..++...... ....++|+|+ ++++++|+| +++.. +++|+.|||+|+|+++++||+|+|+.|
T Consensus 328 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~t 403 (617)
T 3rg2_A 328 CQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNP---LPQGEVGRLMTRGPYTFRGYYKSPQHN 403 (617)
T ss_dssp SEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECSSSCSCCTTCHHHH
T ss_pred CcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCC---CCCCCceEEEecCccccchhcCChhhh
Confidence 99999999999986655432211 1236889997 788999999 55544 789999999999999999999999999
Q ss_pred hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK 628 (649)
Q Consensus 549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~ 628 (649)
+++|. .+ +||||||+|++++||+|+|+||+||+||++ |+||+|.|||++|.+||+|. +|+|++..++..++...
T Consensus 404 ~~~f~--~~--~~yrTGDl~~~~~dG~l~~~GR~dd~iki~-G~ri~~~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~ 477 (617)
T 3rg2_A 404 ASAFD--AN--GFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENLLLRHPAVI-YAALVSMEDELMGEKSC 477 (617)
T ss_dssp HHHBC--TT--SCEEEEEEEEECTTSCEEEEEECSSEEEET-TEEEEHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEE
T ss_pred hhccC--CC--CceecCceEEEcCCceEEEEeecCCEEEEC-CEEeCHHHHHHHHHhCCCee-EEEEEeccCcccCeeEE
Confidence 99997 56 899999999999999999999999999985 99999999999999999999 99999988777665444
Q ss_pred hh
Q 006354 629 IF 630 (649)
Q Consensus 629 ~~ 630 (649)
++
T Consensus 478 a~ 479 (617)
T 3rg2_A 478 AY 479 (617)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.6e-69 Score=638.85 Aligned_cols=460 Identities=22% Similarity=0.289 Sum_probs=337.8
Q ss_pred cCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCC
Q 006354 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (649)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~g 155 (649)
.+.+...|++++|+++++++||++|+++.+ +|+ ++||+||.++++++|++|+++|+++|
T Consensus 55 ~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~g 113 (979)
T 3tsy_A 55 IYIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQN 113 (979)
T ss_dssp CCCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCc
Confidence 445666899999999999999999998631 233 79999999999999999999999999
Q ss_pred CEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCC
Q 006354 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (649)
Q Consensus 156 d~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~ 235 (649)
|+|+|+++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+..+.+..+.... .+ .++.+++.
T Consensus 114 d~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 191 (979)
T 3tsy_A 114 DVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDN 191 (979)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCC
T ss_pred CEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999998877666554332 22 34444332
Q ss_pred CCCccCCCCCCCCCceEeehHHHHhcCCC--CCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--
Q 006354 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-- 311 (649)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-- 311 (649)
.... ......++.++...... ...+.....++|+|+|+|||||||.||||++||+++++.+.......
T Consensus 192 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 263 (979)
T 3tsy_A 192 ESVP--------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263 (979)
T ss_dssp TTSC--------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSC
T ss_pred cccc--------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcc
Confidence 1100 01123455555433222 11223456789999999999999999999999999999887765422
Q ss_pred -CCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHH
Q 006354 312 -PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (649)
Q Consensus 312 -~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l 386 (649)
..+.++|++++++|++|++++.. ++.++..|+++++.+ +..+.+. ++++++|++.++|+++..+
T Consensus 264 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l 332 (979)
T 3tsy_A 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAI 332 (979)
T ss_dssp SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHH
T ss_pred cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHH
Confidence 16788999999999999999865 677899999999944 3334444 9999999999999999988
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH
Q 006354 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (649)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~ 466 (649)
.+.... .....++||.+++||+++++++.+++.
T Consensus 333 ~~~~~~-----------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~ 365 (979)
T 3tsy_A 333 AKSSET-----------------------------------------------EKYDLSSIRVVKSGAAPLGKELEDAVN 365 (979)
T ss_dssp HHCGGG-----------------------------------------------GTSCCTTCCEEEESSCCCCSSHHHHHH
T ss_pred HhCccc-----------------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHH
Confidence 763210 011125899999999999999999999
Q ss_pred hhc-CCccccccCcccccccccccC-----CCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEcccccccc
Q 006354 467 ICM-GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540 (649)
Q Consensus 467 ~~~-~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g 540 (649)
+.+ +++++|.||+||++.+++... ......+++|+|++|++++|+|++++.. +++|+.|||+|+|++++.|
T Consensus 366 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~i~g~~v~~G 442 (979)
T 3tsy_A 366 AKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS---LSRNQPGEICIRGHQIMKG 442 (979)
T ss_dssp HHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB---CCTTCCEEEEEESTTSCSE
T ss_pred HHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC---CCCCCccEEEEECCCcccc
Confidence 887 899999999999987765432 2233568999999999999999766654 7899999999999999999
Q ss_pred ccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCC
Q 006354 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGP 620 (649)
Q Consensus 541 Y~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~ 620 (649)
||++|+.|++.|. .+ |||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.++
T Consensus 443 Y~~~p~~t~~~f~--~~--g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~-~~~Vv~~~~ 516 (979)
T 3tsy_A 443 YLNNPAATAETID--KD--GWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDIT-DVAVVAMKE 516 (979)
T ss_dssp ETTCHHHHHHHBC--TT--SCEEEEEEEEECTTSCEEEEEESCC------------------------------------
T ss_pred ccCChhhhhhhcc--CC--CcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEecc
Confidence 9999999999996 56 89999999999999999999999999998 599999999999999999999 999999999
Q ss_pred CCcccchhhhhhh
Q 006354 621 MKLASSTKIFQSC 633 (649)
Q Consensus 621 ~~~~~~~~~~~~~ 633 (649)
+..++.+.++...
T Consensus 517 ~~~g~~~~a~vv~ 529 (979)
T 3tsy_A 517 EAAGEVPVAFVVK 529 (979)
T ss_dssp -------------
T ss_pred cCCCcEEEEEEEE
Confidence 8888777666554
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.7e-69 Score=595.67 Aligned_cols=438 Identities=20% Similarity=0.253 Sum_probs=351.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
.+++.++|+++++ +|+++|+++ +++ .+||+||.++++++|++|+++|+++||+|+|
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3568999999999 999999985 333 6999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCc-cEEEEecCCCCCc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEK 239 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~ii~~~~~~~~~ 239 (649)
+++|++++++++|||+++|+++||+++.++++++.+++++++++++|++.+..+.+.......+.+ ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999998877776655444444 445444322110
Q ss_pred cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHH-HHHHHHHHhhCCCCCCCc
Q 006354 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-VATAAAIKTLIPNPGRSD 318 (649)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~d 318 (649)
......++++...... ........++|+++|+|||||||.||||++||+++ .+........+ ++.++|
T Consensus 158 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d 226 (529)
T 2v7b_A 158 ---------PRLAPLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAEND 226 (529)
T ss_dssp -----------CCCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTC
T ss_pred ---------cccccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCc
Confidence 0112346666543221 22234567899999999999999999999999999 55554444445 788999
Q ss_pred EEEEccChHHHHHHHH-HHHHHHhCceEEeC----CcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHH
Q 006354 319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393 (649)
Q Consensus 319 ~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 393 (649)
++++.+|++|++++.. ++.++..|+++++. ++..+.+. ++++++|+++++|+++..+.....
T Consensus 227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~-- 293 (529)
T 2v7b_A 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR-----------LVEHRPTVFYGVPTLYANMLVSPN-- 293 (529)
T ss_dssp EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTCTT--
T ss_pred EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH-----------HHHhCCEEEEecHHHHHHHHhCcc--
Confidence 9999999999999876 56789999999875 33333333 999999999999999988864210
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcc
Q 006354 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473 (649)
Q Consensus 394 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l 473 (649)
... ....++|.+++||+++++++.+.+.+.+|+++
T Consensus 294 ---~~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i 328 (529)
T 2v7b_A 294 ---LPA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEI 328 (529)
T ss_dssp ---CCC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred ---ccc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Confidence 000 00027999999999999999999999889999
Q ss_pred ccccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhc
Q 006354 474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (649)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (649)
++.||+||++.+++.........+++|+|+++++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++.|
T Consensus 329 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f- 403 (529)
T 2v7b_A 329 LDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHA---VPDGEVGDLYIKGPSAAVMYWNNREKSRATF- 403 (529)
T ss_dssp EEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCB---CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-
T ss_pred eeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCC---CCCCCccEEEEecCCcccccCCChHHHHHhh-
Confidence 999999999766655544445668999999999999999 55554 7899999999999999999999999999999
Q ss_pred cCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA 624 (649)
Q Consensus 554 ~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~ 624 (649)
.+ +||+|||+|++++||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++. ++..+
T Consensus 404 --~~--~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~-~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 404 --LG--EWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVL-EAAVVGV-DHGGL 467 (529)
T ss_dssp --ET--TEEEEEEEEEECTTSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEE-EEEEEEE-EETTE
T ss_pred --hc--CCcccCceEEECCCccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEe-cCCCc
Confidence 45 89999999999999999999999999998 599999999999999999999 9999998 54444
No 23
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.2e-69 Score=594.62 Aligned_cols=432 Identities=18% Similarity=0.179 Sum_probs=353.6
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 006354 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (649)
Q Consensus 82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~ 161 (649)
+|+.++|+++|+++|+++|+++ .++ ++||+||.++++++|++|+++|+++||+|+|+
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~ 57 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVW------------RDA-----------KITYKQLKEDSDALAHWISSEYPDDRSPIMVY 57 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEe------------CCc-----------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 4799999999999999999986 333 69999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccC
Q 006354 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (649)
Q Consensus 162 ~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (649)
++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++..... ..+.
T Consensus 58 ~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~---------~~~~-------------- 114 (512)
T 3fce_A 58 GHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV---------TDLP-------------- 114 (512)
T ss_dssp ESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS---------SCCS--------------
T ss_pred eCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc---------cccc--------------
Confidence 99999999999999999999999999999999999999999999999754211 0000
Q ss_pred CCCCCCCCceEee---hHHHHhcCC-CCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCC
Q 006354 242 GVSGGISNWTVSS---FSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (649)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 317 (649)
..... +.++..... ....+.....++|+++|+|||||||.||||++||+++++.+.+....+ ++.++
T Consensus 115 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~ 185 (512)
T 3fce_A 115 --------VRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTG 185 (512)
T ss_dssp --------SEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSS
T ss_pred --------cceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCC
Confidence 11112 122221111 122223456789999999999999999999999999999999998888 99999
Q ss_pred cEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhh
Q 006354 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (649)
Q Consensus 318 d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 397 (649)
|++++++|++|++++..++.+++.|+++++.+.....+. ..++..++++++|++.++|+++..+......
T Consensus 186 d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----- 255 (512)
T 3fce_A 186 QVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP-----KDLFASLEQSDIQVWTSTPSFAEMCLMEASF----- 255 (512)
T ss_dssp CEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCCEEEECHHHHHHHTTSTTC-----
T ss_pred CEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhhccc-----
Confidence 999999999999999888999999999999544221111 1222339999999999999999887542110
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccc
Q 006354 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA 476 (649)
Q Consensus 398 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~ 476 (649)
.....++||.+++||+++++++.+.+.+.+ ++++++.
T Consensus 256 ------------------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~ 293 (512)
T 3fce_A 256 ------------------------------------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT 293 (512)
T ss_dssp ------------------------------------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred ------------------------------------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeC
Confidence 011125899999999999999999999888 8999999
Q ss_pred cCcccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhh
Q 006354 477 YGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (649)
Q Consensus 477 YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (649)
||+||+++.++..... .....++|+|+++++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++.
T Consensus 294 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 369 (512)
T 3fce_A 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTI---APDGEKGEIVIVGPSVSVGYLGSPELTEKA 369 (512)
T ss_dssp ECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCB---CCTTSCEEEEEESTTSCSCBTTCHHHHHHH
T ss_pred cccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCC---CCCCCeEEEEEeccccChhhcCCchhhhhc
Confidence 9999998877654332 22457899999999999999 55554 789999999999999999999999999999
Q ss_pred hccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchh
Q 006354 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTK 628 (649)
Q Consensus 552 f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~ 628 (649)
|.. .++.+||+|||+|++ +||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.++...++.+.
T Consensus 370 f~~-~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~ 442 (512)
T 3fce_A 370 FTM-IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVE-GAVIVPIKKGEKYDYLL 442 (512)
T ss_dssp EEE-ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEE-EEEEEEEEETTEEEEEE
T ss_pred ccc-CCCCEEEeCCceEEe-cCCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcc-eEEEEEEecCCCceEEE
Confidence 842 133489999999999 79999999999999998 599999999999999999999 99999987766654443
No 24
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.1e-68 Score=585.41 Aligned_cols=435 Identities=18% Similarity=0.181 Sum_probs=362.2
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q 006354 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI 160 (649)
Q Consensus 82 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i 160 (649)
+|+.++|+++|+++|+++|+.+ +++ ++||+||.++++++|++|++. |+++|++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i 57 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILV 57 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 4789999999999999999986 443 799999999999999999885 8899999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~ 240 (649)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++...... .
T Consensus 58 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~------------------ 113 (511)
T 3e7w_A 58 YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------A------------------ 113 (511)
T ss_dssp EESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------C------------------
T ss_pred EecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------h------------------
Confidence 9999999999999999999999999999999999999999999999997543110 0
Q ss_pred CCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 006354 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (649)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 320 (649)
........+++++...............++|+++|+|||||||.||||++||+++.+.+.+....+ ++.++|++
T Consensus 114 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~ 187 (511)
T 3e7w_A 114 -----VGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIF 187 (511)
T ss_dssp -----CCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEE
T ss_pred -----cccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceE
Confidence 001234556666665443333333456789999999999999999999999999999999998888 89999999
Q ss_pred EEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcch
Q 006354 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (649)
Q Consensus 321 l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~ 400 (649)
++++|++|++++..++.++..|+++++.+.....+ +..++..++++++|++.++|++++.+......
T Consensus 188 l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------- 254 (511)
T 3e7w_A 188 LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNK-----PKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF-------- 254 (511)
T ss_dssp EECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHS-----HHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC--------
T ss_pred EEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcC-----HHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--------
Confidence 99999999999988899999999999854321111 11122339999999999999999887652100
Q ss_pred hHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCccccccCc
Q 006354 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGL 479 (649)
Q Consensus 401 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~ 479 (649)
.....+++|.+++||+++++++.+.+.+.+ ++++++.||+
T Consensus 255 ---------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 255 ---------------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp ---------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred ---------------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 001124899999999999999999999888 8999999999
Q ss_pred ccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhcc
Q 006354 480 TETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (649)
Q Consensus 480 TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (649)
||++..++..... .....++|+|+|+++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++.|..
T Consensus 296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 371 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQP---LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS 371 (511)
T ss_dssp GGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred chheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCC---CCCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence 9998877654321 23457899999999999999 55544 789999999999999999999999999999963
Q ss_pred CCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhh
Q 006354 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKI 629 (649)
Q Consensus 555 ~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~ 629 (649)
. ++.+||+|||+|++ +||+|+|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.+
T Consensus 372 ~-~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~~~~~~~a 442 (511)
T 3e7w_A 372 H-EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVR-SAVVIPYQPNGTVEYLIA 442 (511)
T ss_dssp S-SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEE-EEEEEEECSSSSCCEEEE
T ss_pred C-CCCEEEeCCCeEEc-cCCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcc-eEEEEEEcCCCCceEEEE
Confidence 2 32348999999999 59999999999999998 599999999999999999999 999999887776654433
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.8e-68 Score=586.65 Aligned_cols=428 Identities=19% Similarity=0.197 Sum_probs=348.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|+++++++|+++|+.+ .++ ++||+||.++++++|++|+++|+++||+|+|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36899999999999999999986 443 6999999999999999999999999999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCcc
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~ 240 (649)
+++|++++++++|||+++|+++||++|.++++++.+++++++++++|++.+....+.
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~----------------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE----------------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------------------
Confidence 999999999999999999999999999999999999999999999999876422110
Q ss_pred CCCCCCCCCceEeehHHHHhcC--CCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhh--CCCCCC
Q 006354 241 SGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL--IPNPGR 316 (649)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~ 316 (649)
......+.++.... ...........++|+++|+|||||||.||||++||+++++.+.+.... + .+.+
T Consensus 117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~ 187 (521)
T 3l8c_A 117 --------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPK 187 (521)
T ss_dssp --------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCS
T ss_pred --------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCC
Confidence 12334444433221 111222345678999999999999999999999999999988877665 5 7788
Q ss_pred CcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHh
Q 006354 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (649)
Q Consensus 317 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 396 (649)
++++++..|++|..++..++.++..|+++++.+.....+. ..+...+.++++|++.++|+++..+......
T Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---- 258 (521)
T 3l8c_A 188 QPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF-----KQLFTTIAQLPVGIWTSTPSFADMAMLSDDF---- 258 (521)
T ss_dssp SCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH-----HHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----
T ss_pred CCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH-----HHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----
Confidence 9999999999999998888889999999998544322221 1223338999999999999999877542100
Q ss_pred hcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc-CCcccc
Q 006354 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (649)
Q Consensus 397 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~ 475 (649)
.....++||.+++||+++++++.+.+.+.+ ++++++
T Consensus 259 -------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~ 295 (521)
T 3l8c_A 259 -------------------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295 (521)
T ss_dssp -------------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred -------------------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence 001124899999999999999999888887 899999
Q ss_pred ccCcccccccccccCCC-----CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchh
Q 006354 476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (649)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (649)
.||+||++++++..... ....+++|+|+|+++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|++
T Consensus 296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 371 (521)
T 3l8c_A 296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKE---LSSGEQGEIIVTGPAVSKGYLNNPEKTAE 371 (521)
T ss_dssp EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCB---CCTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCC---CCCCCceEEEecccccChhhcCCchHhhc
Confidence 99999998877654322 23457899999999999999 55554 78999999999999999999999999999
Q ss_pred hhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK 622 (649)
Q Consensus 551 ~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~ 622 (649)
.|.. .++.+||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|. +|+|++..+..
T Consensus 372 ~f~~-~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~-~a~vv~~~~~~ 440 (521)
T 3l8c_A 372 AFFT-FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVA-SAVAVPRYNKE 440 (521)
T ss_dssp HEEE-ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEE-EEEEECCCSSS
T ss_pred cCcC-CCCceeeeCCCEEEEeCCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcc-eEEEEEeecCC
Confidence 9852 133489999999999999999999999999998 599999999999999999999 99999987544
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.8e-68 Score=584.12 Aligned_cols=427 Identities=24% Similarity=0.318 Sum_probs=346.5
Q ss_pred CCCHHHHHHHHHHhCCC-CcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354 81 ASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~ 159 (649)
..|+.++|+++++++|+ ++|+++ +++ .+||+||.++++++|++|. .|++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~-----~~~~V~ 72 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRF------------GER-----------SLTYAELAAAAGATAGRIG-----GAGRVA 72 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEE------------TTE-----------EEEHHHHHHHHHHHHTTCC--------CEE
T ss_pred cchhHHHHHHHHHhCCCCCeEEEE------------CCe-----------eeeHHHHHHHHHHHHhhcc-----CCCEEE
Confidence 46888899999999987 999986 333 6999999999999999874 388999
Q ss_pred EEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCc
Q 006354 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (649)
Q Consensus 160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~ 239 (649)
|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+... ......+..+. ++.
T Consensus 73 i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~----- 141 (505)
T 3nyq_A 73 VWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDV----- 141 (505)
T ss_dssp EECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCT-----
T ss_pred EEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-ccc-----
Confidence 9999999999999999999999999999999999999999999999999865210 01111111111 100
Q ss_pred cCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 006354 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (649)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 319 (649)
......+.....++|+|+|+|||||||.||||++||+++.+.+.+....+ ++.++|+
T Consensus 142 ----------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 198 (505)
T 3nyq_A 142 ----------------------RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDV 198 (505)
T ss_dssp ----------------------TCCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCE
T ss_pred ----------------------ccccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcE
Confidence 00111223455789999999999999999999999999999999998888 8999999
Q ss_pred EEEccChHHHHHHHH-HHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHH
Q 006354 320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (649)
Q Consensus 320 ~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 395 (649)
+++.+|++|..++.. ++.++..|+++++.+ +..+.+. + ++++|+++++|+++..+.+.......
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp EEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred EEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 999999999999865 788999999999843 3333333 6 67999999999999998764321100
Q ss_pred hhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCcccc
Q 006354 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (649)
Q Consensus 396 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~ 475 (649)
. ....+++|.+++||+++++++.+.+...++++++|
T Consensus 267 ~--------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~ 302 (505)
T 3nyq_A 267 L--------------------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIE 302 (505)
T ss_dssp H--------------------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEE
T ss_pred h--------------------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeec
Confidence 0 00012789999999999999999999989999999
Q ss_pred ccCcccccccccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccC
Q 006354 476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (649)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (649)
.||+||++..++.........+++|+|++|++++|+| +++.....++.|+.|||+|+|++++.|||++|+.|+++|.
T Consensus 303 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-- 379 (505)
T 3nyq_A 303 RYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT-- 379 (505)
T ss_dssp EEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC--
T ss_pred ccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc--
Confidence 9999999987777666666778999999999999999 5565544345589999999999999999999999999997
Q ss_pred CCcccceeeCcEEEEccCCeEEEEecC-CCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354 556 ERGMCWFYTGDIGQVYPDGCLEIIDRK-KDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS 632 (649)
Q Consensus 556 ~~~~~w~~TGDlg~~~~dG~l~i~GR~-dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~ 632 (649)
.+ |||+|||+|++++||+|+|+||+ ||+||++ |++|+|.|||++|.+||+|. +|+|++.+++..++.+.++..
T Consensus 380 ~~--g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~-G~~v~~~eIE~~l~~~p~V~-~a~Vv~~~~~~~g~~l~a~vv 453 (505)
T 3nyq_A 380 ED--GFFRTGDMAVRDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVR-EAAVTGEPDPDLGERIVAWIV 453 (505)
T ss_dssp TT--SCEEEEEEEEECTTSCEEEEEESSCCCEEET-TEEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEEEE
T ss_pred CC--CCCccCCeEEECCCccEEEeCCccCceEEeC-CEEECHHHHHHHHHHCcCcc-EEEEEeeECCCCCcEEEEEEE
Confidence 56 89999999999999999999997 5999985 99999999999999999999 999999988877765554443
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.5e-67 Score=579.91 Aligned_cols=436 Identities=20% Similarity=0.259 Sum_probs=345.0
Q ss_pred CHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 006354 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (649)
Q Consensus 83 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 162 (649)
|+.++|+++|+++|+++|+++ +++ ++||+||.++++++|++|+++ +||+|+|++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 667899999999999999985 333 699999999999999999987 899999999
Q ss_pred cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCCCCccCC
Q 006354 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (649)
Q Consensus 163 ~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (649)
+|++++++++|||+++|++++|+++.++++++.+++++++++++|++.+.......... ...+..+.........
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---- 130 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGL---- 130 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeecccccc----
Confidence 99999999999999999999999999999999999999999999998765443221110 1111111110000000
Q ss_pred CCCCCCCceEe-ehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 006354 243 VSGGISNWTVS-SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (649)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 321 (649)
......+... ..+.................++|+|+|+|||||||.||||++||+++++.+......+ ++.++|+++
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l 208 (501)
T 3ipl_A 131 -LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWL 208 (501)
T ss_dssp --------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEE
T ss_pred -cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEE
Confidence 0000000000 0011111011011112345789999999999999999999999999999999998888 999999999
Q ss_pred EccChHHHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhc
Q 006354 322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (649)
Q Consensus 322 ~~~pl~h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 398 (649)
+.+|++|++++..++.+++.|+++++.+ +..+.+. ++++++|+++++|++++.+.+....
T Consensus 209 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------ 271 (501)
T 3ipl_A 209 SVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLH------ 271 (501)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCC------
T ss_pred EeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCC------
Confidence 9999999999988889999999999944 4444444 9999999999999999988763110
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccC
Q 006354 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (649)
Q Consensus 399 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG 478 (649)
...+||.+++||+++++++.+.+.+ +++++++.||
T Consensus 272 --------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG 306 (501)
T 3ipl_A 272 --------------------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFG 306 (501)
T ss_dssp --------------------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEE
T ss_pred --------------------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccc
Confidence 0026999999999999999999887 4999999999
Q ss_pred cccccccccccCCC--CCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCC
Q 006354 479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (649)
Q Consensus 479 ~TE~~~~~~~~~~~--~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (649)
+||+++.++..... ....+++|+|+++++++|+|++ +++.|||+|+|++++.||+++|+.|.+ | .
T Consensus 307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~ 373 (501)
T 3ipl_A 307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F---E 373 (501)
T ss_dssp EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---E
T ss_pred ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h---c
Confidence 99998765443322 2355789999999999999943 356799999999999999999999988 6 5
Q ss_pred CcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhh
Q 006354 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIF 630 (649)
Q Consensus 557 ~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~ 630 (649)
+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|. +|+|++.+++..++.+.++
T Consensus 374 ~--g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~-~~~vv~~~~~~~g~~~~a~ 443 (501)
T 3ipl_A 374 N--GYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGIS-DAVCVGHPDDTWGQVPKLY 443 (501)
T ss_dssp T--TEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEE-EEEEEEEEETTTEEEEEEE
T ss_pred C--CceecCCEEEEcCCCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCcc-EEEEEEEecccCCceEEEE
Confidence 6 89999999999999999999999999997 599999999999999999999 9999999888876554433
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.9e-66 Score=579.04 Aligned_cols=447 Identities=20% Similarity=0.220 Sum_probs=314.2
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCC
Q 006354 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (649)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd 156 (649)
.+....|+.++|+++|+++||++|+.+.+-. .+. ..+..+.+||+||.++++++|++|++.|+ +||
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd 80 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HGR 80 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSC
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 3455579999999999999999999875310 000 01123579999999999999999999999 799
Q ss_pred EEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCccEEEEecCCC
Q 006354 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (649)
Q Consensus 157 ~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~~~ 236 (649)
+|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+ ..+....++...
T Consensus 81 ~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~--- 152 (562)
T 3ite_A 81 AIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK--- 152 (562)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT---
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc---
Confidence 999999999999999999999999999999999999999999999999999987654321 011111111100
Q ss_pred CCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC-----
Q 006354 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI----- 311 (649)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~----- 311 (649)
...+.+....... ........++++|+|+|||||||.||||++||+++.+.+......+
T Consensus 153 ---------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 216 (562)
T 3ite_A 153 ---------------NQSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAP 216 (562)
T ss_dssp ---------------CHHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCG
T ss_pred ---------------chhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccc
Confidence 0112222222211 1122345678899999999999999999999999998887655431
Q ss_pred --CCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHH
Q 006354 312 --PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (649)
Q Consensus 312 --~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 389 (649)
..+...+++++..|++|+.++..++.++..|+++++.......+ .+...++++++|++.++|++++.+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-------~~~~~i~~~~~t~~~~~P~~l~~~~~~ 289 (562)
T 3ite_A 217 KSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLD-------DLPRTFRELGVTHAGIVPSLLDQTGLV 289 (562)
T ss_dssp GGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHH-------SHHHHHHHTTCCEEEECHHHHHHHTCC
T ss_pred hhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHH-------HHHHHHHHcCCCEEEcCHHHHhhcccC
Confidence 14778899999999999999888899999999999855432211 123338999999999999988755221
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhc
Q 006354 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (649)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~ 469 (649)
. ...++||.+++||+++++++.+.|++.+
T Consensus 290 ~---------------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 318 (562)
T 3ite_A 290 P---------------------------------------------------EDAPHLVYLGVGGEKMTPRTQQIWSSSD 318 (562)
T ss_dssp G---------------------------------------------------GGSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred c---------------------------------------------------cccCceEEEEEecCCCCHHHHHHHhhCC
Confidence 0 0124899999999999999999999988
Q ss_pred CCccccccCcccccccccccCC-CCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccc
Q 006354 470 GAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (649)
Q Consensus 470 ~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (649)
++++++.||+||++..++.... .....+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.|||++|+.|
T Consensus 319 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~p~~t 395 (562)
T 3ite_A 319 RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEH---VKKGMAGELVIEGSLVANGYLNRPDAK 395 (562)
T ss_dssp SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCB---CCTTSCEEEEEESTTSCCEESSCTTCC
T ss_pred CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCC---CCCCCceEEEEeccccchhhCCCcccc
Confidence 9999999999999887765543 334567899999999999999655543 789999999999999999999999999
Q ss_pred hhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCChhhhHhccC-cccccceEEEecCCCCcccch
Q 006354 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKIPSTTTVL-PLLFHHIRLWRNGPMKLASST 627 (649)
Q Consensus 549 ~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~-p~V~~~~~V~g~~~~~~~~~~ 627 (649)
+..+ .+|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+| |.|. +++|++..++..++..
T Consensus 396 ~~~~---~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~-~~~v~~~~~~~~~~~~ 470 (562)
T 3ite_A 396 GFCD---INGRKMYRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDI-DVVTLLLNHPGTSKQF 470 (562)
T ss_dssp SEEE---ETTEEEEEEEEEEEECTTSCEEEEEEC----------------------------------------------
T ss_pred cccc---CCCCEEEecCCEEEEcCCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCce-eEEEEEecCCCCcceE
Confidence 8776 554469999999999999999999999999998 59999999999999998 7788 9999998887766543
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.7e-67 Score=586.66 Aligned_cols=446 Identities=19% Similarity=0.208 Sum_probs=353.8
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 006354 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (649)
Q Consensus 80 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~ 159 (649)
...|+.++|+++|+++||++|+++.+ + +..+++||+||.++++++|++|+++|+++||+|+
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~ 69 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLN----------K---------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVL 69 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEE----------T---------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEc----------C---------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 34799999999999999999998753 1 1124799999999999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHhcCCEEEEecCCC---CHHHHHHHHhhcCceEEEECchhHHHHHHhh-ccCCCccEEEEecCC
Q 006354 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSL---GEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEND 235 (649)
Q Consensus 160 i~~~~~~~~vva~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~ii~~~~~ 235 (649)
|+++|++++++++|||+++|+++||++|.+ +.+++.++++++++++++++.+....+.... ...+....+
T Consensus 70 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------ 143 (590)
T 3kxw_A 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI------ 143 (590)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE------
T ss_pred EEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc------
Confidence 999999999999999999999999999988 4578999999999999999988766554322 111111111
Q ss_pred CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (649)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 315 (649)
.....+++.... ..........++|+|+|+|||||||.||||++||+++++.+.+....+ ++.
T Consensus 144 ---------------~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 206 (590)
T 3kxw_A 144 ---------------PAIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN 206 (590)
T ss_dssp ---------------EEEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred ---------------ceeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence 112222211111 111223456789999999999999999999999999999999999888 999
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHH
Q 006354 316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (649)
Q Consensus 316 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 394 (649)
++|++++++|++|++++.. ++.+++.|+++++.++..+... +..++..++++++|++.++|.++..+.+.+....
T Consensus 207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 282 (590)
T 3kxw_A 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN----PLSWLKHITKYKATISGSPNFAYDYCVKRIREEK 282 (590)
T ss_dssp TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHC----THHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG
T ss_pred CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHC----HHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh
Confidence 9999999999999999987 7889999999999543322111 1122233999999999999999998876421110
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcC----
Q 006354 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---- 470 (649)
Q Consensus 395 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~---- 470 (649)
. .....++||.+++||+++++++.+.|.+.++
T Consensus 283 ~--------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 318 (590)
T 3kxw_A 283 K--------------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF 318 (590)
T ss_dssp G--------------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred c--------------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 0 0112258999999999999999999988763
Q ss_pred --CccccccCcccccccccccCCC---------------------------CCCCCccCCCcccceEEEEecCCCCcccC
Q 006354 471 --APIGQAYGLTETCAGSTFSEWD---------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTS 521 (649)
Q Consensus 471 --~~l~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~p~~~v~i~d~~~~~~~~~ 521 (649)
+++++.||+||++++++..... ....+++|+|+++ ++|+|++++..
T Consensus 319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~--- 393 (590)
T 3kxw_A 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP--- 393 (590)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB---
T ss_pred CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC---
Confidence 4799999999999877654321 1123789999998 88899655543
Q ss_pred CCCCCccEEEEccccccccccCCCccchhhhccC----CCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCceeeeCC
Q 006354 522 DKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (649)
Q Consensus 522 ~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~----~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~~v~~~ 597 (649)
+++|+.|||+|+|++++.|||++|+.|+++|..+ .+|.+||+|||+|++| ||.|+|+||+||+||+ +|++|+|.
T Consensus 394 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~ 471 (590)
T 3kxw_A 394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQ 471 (590)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHH
T ss_pred CCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHH
Confidence 7899999999999999999999999999999632 1233599999999999 9999999999999998 59999999
Q ss_pred hhhhHh-ccCccccc-ceEEEecCCCC
Q 006354 598 KIPSTT-TVLPLLFH-HIRLWRNGPMK 622 (649)
Q Consensus 598 eIE~~l-~~~p~V~~-~~~V~g~~~~~ 622 (649)
|||++| ..+|.|.. +|+|++.+++.
T Consensus 472 eIE~~l~~~~~~v~~~~~~v~~~~~~~ 498 (590)
T 3kxw_A 472 DIEFSLMHSPLHHVLGKCAAFVIQEEH 498 (590)
T ss_dssp HHHHHHHHSGGGGGEEEEEEEEEEETT
T ss_pred HHHHHHHhcCccccCccEEEEEecCCC
Confidence 999999 88999872 48888876655
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.3e-65 Score=574.69 Aligned_cols=435 Identities=23% Similarity=0.293 Sum_probs=358.1
Q ss_pred ccCCCCCCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCC
Q 006354 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154 (649)
Q Consensus 75 ~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~ 154 (649)
...++...|+.++|+++++++|+.+++.. .. +..+++||+||.++++++|++|+++|+++
T Consensus 14 ~~~~~~~~tl~~~l~~~a~~~p~~~~~~~-------------~~-------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~ 73 (576)
T 3gqw_A 14 PMRYADFPTLVDALDYAALSSAGMNFYDR-------------RC-------QLEDQLEYQTLKARAEAGAKRLLSLNLKK 73 (576)
T ss_dssp CCCCSCCSSHHHHHHHHTTSSCEEEEECT-------------TS-------CEEEEEEHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CcccCCCCcHHHHHHHHhhCCCCeEEeCC-------------CC-------CceeEEcHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556678999999999999999887742 11 12257999999999999999999999999
Q ss_pred CCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCC-------HHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCcc
Q 006354 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIK 227 (649)
Q Consensus 155 gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~ 227 (649)
||+|+|+++|++++++++|||+++|+++||+++.++ .+++.+++++++++++|++.+..+.+.......+.+.
T Consensus 74 gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 153 (576)
T 3gqw_A 74 GDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELH 153 (576)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcce
Confidence 999999999999999999999999999999999999 8999999999999999999998887776654433221
Q ss_pred EEEEecCCCCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHH
Q 006354 228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (649)
Q Consensus 228 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~ 307 (649)
......... ............++|+++|+|||||||.||||++||+++++.+.+.
T Consensus 154 ------------------------~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~ 208 (576)
T 3gqw_A 154 ------------------------VLSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAI 208 (576)
T ss_dssp ------------------------EEEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHH
T ss_pred ------------------------ecchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHh
Confidence 122222211 1122223345578999999999999999999999999999998887
Q ss_pred Hhh-CCCCCCCcEEEEccChHHHHHHHH-HHHHHHhCceEEeCC-------cccccccchhhccCccccceeecceEEEe
Q 006354 308 KTL-IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-------TLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378 (649)
Q Consensus 308 ~~~-~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~-------~~~l~~~~~~~~~~~~~~i~~~~~t~l~~ 378 (649)
... + .+.++|++++++|++|++++.. ++.++..|+++++.. |..+.+. ++++++|++++
T Consensus 209 ~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~ 276 (576)
T 3gqw_A 209 SHDGI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKL-----------ISKNRGTVSVA 276 (576)
T ss_dssp HHTTS-CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHH-----------HHHTTCCEEEE
T ss_pred hhccc-CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHH-----------HHHhCCeEEEc
Confidence 665 6 8899999999999999999876 566789999988843 4444444 99999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCC
Q 006354 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458 (649)
Q Consensus 379 ~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~ 458 (649)
+|.++..+....... .......++||.+++||++++
T Consensus 277 ~p~~~~~l~~~~~~~--------------------------------------------~~~~~~l~~lr~~~~gg~~l~ 312 (576)
T 3gqw_A 277 PPFGYELCQRRVNEK--------------------------------------------DLAELDLSCWRVAGIGAEPIS 312 (576)
T ss_dssp CHHHHHHHHHSCCHH--------------------------------------------HHTTCCCTTCCEEEECSSCCC
T ss_pred CHHHHHHHHHHhccc--------------------------------------------ccccCChhhhHhhhccCccCC
Confidence 999998776532111 111122358999999999999
Q ss_pred HHHHHHHHhhc------CCccccccCcccccccccccCCCCC----------------------------CCCccCCCcc
Q 006354 459 ADSQRFINICM------GAPIGQAYGLTETCAGSTFSEWDDP----------------------------SVGRVGPPVP 504 (649)
Q Consensus 459 ~~~~~~~~~~~------~~~l~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~p 504 (649)
+++.+.|.+.+ ++++++.||+||++.+++....... ...++|+|+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~ 392 (576)
T 3gqw_A 313 AEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALP 392 (576)
T ss_dssp HHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECT
T ss_pred HHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCC
Confidence 99999998877 6789999999999988776543211 0138999999
Q ss_pred cceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCC
Q 006354 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584 (649)
Q Consensus 505 ~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd 584 (649)
+++++|+| +++.. +++|+.|||+|+|++++.|||++|+.|.+.+ .+ |||+|||+|++ +||+|+|+||+||
T Consensus 393 ~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~---~~--g~~~TGDl~~~-~dG~l~~~GR~dd 462 (576)
T 3gqw_A 393 EHGIEIRN-EAGMP---VAERVVGHICISGPSLMSGYFGDQVSQDEIA---AT--GWLDTGDLGYL-LDGYLYVTGRIKD 462 (576)
T ss_dssp TCEEEEEC-TTSCB---CCTTBCEEEEEESTTSCCCBTTCHHHHHHHH---HH--SCEEEEEEEEE-ETTEEEEEEETTT
T ss_pred CCeEEEEC-CCCCC---CCCCCeEEEEEeCccccccccCCcccccccc---CC--CeeeccceEEE-ECCEEEEEecCcc
Confidence 99999999 66654 7899999999999999999999999888876 55 89999999999 7999999999999
Q ss_pred eEEcCCceeeeCChhhhHhccCcccccceEEEecCCCC
Q 006354 585 IVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMK 622 (649)
Q Consensus 585 ~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~ 622 (649)
+||+ +|++|+|.|||++|.+||+|. +++|++..++.
T Consensus 463 ~ik~-~G~~v~p~eIE~~l~~~p~V~-~~~vv~~~~~~ 498 (576)
T 3gqw_A 463 LIII-RGRNIWPQDIEYIAEQEPEIH-SGDAIAFVTAQ 498 (576)
T ss_dssp CEEE-TTEEECHHHHHHHHTTSSSCC-TTSEEEEECTT
T ss_pred eEEE-CCEEECHHHHHHHHHhCcccc-cccEEEEEcCC
Confidence 9998 599999999999999999999 98888765543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.4e-61 Score=526.72 Aligned_cols=408 Identities=18% Similarity=0.205 Sum_probs=312.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeecCccccccCCCccceeecCCCceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 006354 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (649)
Q Consensus 81 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i 160 (649)
..|+.++|+++++++||++|+++.+.. ++. .+..+++||+||.++++++|++|+++|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 379999999999999999999986311 011 1233579999999999999999999996 9999999
Q ss_pred EccCCHHHHHHHHHHHhcCCEEEEecC---CCCHHHHHHHHhhcCceEEEECchhHHHHHHhhccCCCc--cEEEEecCC
Q 006354 161 LAETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFEND 235 (649)
Q Consensus 161 ~~~~~~~~vva~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~ii~~~~~ 235 (649)
+++|++++++++|||+++|+++||+++ .++.+++.+++++++++++|++.+....+.......+.. ..++.++.
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL- 166 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-
Confidence 999999999999999999999999999 788999999999999999999999887776654333221 12222221
Q ss_pred CCCccCCCCCCCCCceEeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCC
Q 006354 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (649)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 315 (649)
+.. ............++++|+|+|||||||.||||++||+++++.+.+....+ .+.
T Consensus 167 ----------------------~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 222 (480)
T 3t5a_A 167 ----------------------LDL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FAD 222 (480)
T ss_dssp ----------------------SCT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTT
T ss_pred ----------------------ccc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccc
Confidence 111 11111223456788999999999999999999999999999998888776 666
Q ss_pred C------CcEEEEccChHHHHHHHH-HHHHHHhCceEEeCCcccccccchhhccCccccceeecceEEEechHHHHHHHH
Q 006354 316 R------SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (649)
Q Consensus 316 ~------~d~~l~~~pl~h~~~~~~-~~~~l~~G~~l~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 388 (649)
. +|++++++|++|++++.. ++.+++.|+++++.++..+... +..+...++++++| +.++|+++..+..
T Consensus 223 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t-~~~~p~~~~~l~~ 297 (480)
T 3t5a_A 223 TDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQR----PARWMHLMASDFHA-FSAAPNFAFELAA 297 (480)
T ss_dssp TTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHC----THHHHHHTTSSSEE-EEEECHHHHHHHH
T ss_pred cccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHC----HHHHHHHHHhhcee-EeeChHHHHHHHH
Confidence 6 899999999999999765 6889999999999544322111 12223339999999 8899999888765
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhh
Q 006354 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (649)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~ 468 (649)
....... ......++||.+++||+++++++.+.|.+.
T Consensus 298 ~~~~~~~-------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 334 (480)
T 3t5a_A 298 RRTTDDD-------------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADR 334 (480)
T ss_dssp HHCCTGG-------------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcCccc-------------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHH
Confidence 3211000 011123589999999999999999999988
Q ss_pred cC------CccccccCcccccccccccCCCC-------------------------CCCCccCCCcccceEEEEecCCCC
Q 006354 469 MG------APIGQAYGLTETCAGSTFSEWDD-------------------------PSVGRVGPPVPCCYIKLVSWDEGG 517 (649)
Q Consensus 469 ~~------~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~p~~~v~i~d~~~~~ 517 (649)
++ +.+++.||+||++.+++...... ...+++|+|++ ++++|+|.+++.
T Consensus 335 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~ 413 (480)
T 3t5a_A 335 FARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCI 413 (480)
T ss_dssp SGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTE
T ss_pred HhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCc
Confidence 73 47999999999998877654322 12368999999 999999965554
Q ss_pred cccCCCCCCccEEEEccccccccccCCCccchhhhcc-------CCCcccceeeCcEEEEccCCeEEEEec
Q 006354 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV-------DERGMCWFYTGDIGQVYPDGCLEIIDR 581 (649)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~-------~~~~~~w~~TGDlg~~~~dG~l~i~GR 581 (649)
. +++|+.|||+|+|++++.|||++|++|+++|.. ..++.|||||||+|+++ ||+|+|+||
T Consensus 414 ~---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 414 E---CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp E---CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred C---CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 4 789999999999999999999999999999952 11134799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.6e-44 Score=377.79 Aligned_cols=258 Identities=19% Similarity=0.214 Sum_probs=218.6
Q ss_pred CCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHHHhCceEEeCCc-cc
Q 006354 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST-LT 352 (649)
Q Consensus 274 ~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~l~~~~~-~~ 352 (649)
.+|+|||+|||||||.||||++||+++++.+.+....+ +++++|++++++|++|++++..++.++..|+++++.++ ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 47899999999999999999999999999999999998 99999999999999999999988899999999988443 23
Q ss_pred ccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccccccchhhhHH
Q 006354 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (649)
Q Consensus 353 l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 432 (649)
..+. ++++++|++.++|++++.+++......
T Consensus 115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~~-------------------------------------- 145 (358)
T 4gs5_A 115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATSG-------------------------------------- 145 (358)
T ss_dssp TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTGG--------------------------------------
T ss_pred HHHH-----------HHHhCCeEEEcChHHHHHhhccccccc--------------------------------------
Confidence 3333 899999999999999998876321100
Q ss_pred HHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCCcccceEEEEe
Q 006354 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS 512 (649)
Q Consensus 433 ~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p~~~v~i~d 512 (649)
..++||.+++||+++++++.+++++ +++++++.||+||++..++.........+.+|.+.||+++.+.
T Consensus 146 ----------~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~- 213 (358)
T 4gs5_A 146 ----------QVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVD- 213 (358)
T ss_dssp ----------GGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEEC-
T ss_pred ----------cCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEec-
Confidence 1148999999999999999999987 4899999999999999888887777778899999999988763
Q ss_pred cCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCCeEEEEecCCCeEEcCCce
Q 006354 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (649)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG~l~i~GR~dd~iki~~G~ 592 (649)
..|||+++|+.. .+ |||+|||+|++|+|| ++++||+||+||+ +|+
T Consensus 214 -------------~~Gel~~~g~~~------------------~~--g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~ 258 (358)
T 4gs5_A 214 -------------ERGCLHISGAVT------------------NG--QTVQTNDLVEIHGNA-FQWIGRADNVINS-GGV 258 (358)
T ss_dssp -------------TTSEEEEESGGG------------------TT--CCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTE
T ss_pred -------------CcCceEEecccc------------------cC--cceecCCccccccCc-eEEcccccCeEEE-CCE
Confidence 358999988532 34 899999999999888 6778999999998 599
Q ss_pred eeeCChhhhHh---ccCcccccceEEE-ecCCCCcccchhh
Q 006354 593 YISLGKIPSTT---TVLPLLFHHIRLW-RNGPMKLASSTKI 629 (649)
Q Consensus 593 ~v~~~eIE~~l---~~~p~V~~~~~V~-g~~~~~~~~~~~~ 629 (649)
+|+|.|||++| .+||.|. +|+|+ +.+++..|+.+.+
T Consensus 259 ~v~p~eIE~~l~~~~~~p~V~-~a~vv~~~~d~~~ge~~~a 298 (358)
T 4gs5_A 259 KIVLDQIDQRIAAVFHHLNIG-NAFFCWWEPDAKLGQKLVL 298 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHTCC-CCEEEEEEEETTTEEEEEE
T ss_pred EECHHHHHHHHHHhccCCCcc-EEEEEEecCCccCCEEEEE
Confidence 99999999877 4689999 88776 6667776655443
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.7e-42 Score=370.10 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=224.0
Q ss_pred CCCC-CCeEEEEeecCCCCCcceEEechHHHHHHHHHHH---hhCCCCCCCcEEEEccChHHHHHH-HHHHHHHHhCceE
Q 006354 271 LPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAI 345 (649)
Q Consensus 271 ~~~~-~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~~-~~~~~~l~~G~~l 345 (649)
...+ +++++|+|||||||.||||++||+++.+.+.... ..+ ++.++|++++++|++|..+. ...+.++..|+++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 4455 8999999999999999999999999987766653 345 78899999999998765554 4567789999999
Q ss_pred EeCCc---ccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhccccc
Q 006354 346 GYGST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422 (649)
Q Consensus 346 ~~~~~---~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 422 (649)
++.++ ..+.+. ++++++|+++++|+++..|.+.........
T Consensus 160 ~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~------------------------- 203 (436)
T 3qov_A 160 VPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGIDP------------------------- 203 (436)
T ss_dssp ECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCCT-------------------------
T ss_pred EeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCCc-------------------------
Confidence 88433 334444 999999999999999999987543211000
Q ss_pred cccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccccccccCCCCCCCCccCCC
Q 006354 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502 (649)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p 502 (649)
..++||.+++||+++++++.+++++.+|+++++.||+||+++.+...... ....+|.|
T Consensus 204 --------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~ 261 (436)
T 3qov_A 204 --------------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFW 261 (436)
T ss_dssp --------------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEEC
T ss_pred --------------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEc
Confidence 01489999999999999999999999999999999999996542222211 11236677
Q ss_pred cccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccCC------e-
Q 006354 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG------C- 575 (649)
Q Consensus 503 ~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~dG------~- 575 (649)
.++++++|+|++++.. +++|+.|||+|+|. |++.| ++ +||+|||+|++++|| +
T Consensus 262 ~~~~~v~i~d~~~g~~---~~~g~~Gel~v~~~------------~~~~~---~~--~~y~TGDl~~~~~~gc~cG~~~~ 321 (436)
T 3qov_A 262 EDCYLVEIIDPETGEP---VPEGEIGELVLTTL------------DREMM---PL--IRYRTRDLTRILPGKCPCGRTHL 321 (436)
T ss_dssp TTTEEEEEECTTTCSB---CSTTCCEEEEEEES------------SCCSS---CC--CSEEEEEEECEECSCCTTCCCSC
T ss_pred cCceEEEEEECCCCCC---CCCCCceEEEEecc------------CcCCc---eE--EEEEcCCEEEEcCCCCCCCCCcc
Confidence 7899999999777755 78999999999983 34445 55 899999999999998 5
Q ss_pred --EEEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhh
Q 006354 576 --LEIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQS 632 (649)
Q Consensus 576 --l~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~ 632 (649)
++|+||.||+||+ +|++|+|.|||++|.+||+|. +++|++..++..++.+.++..
T Consensus 322 ~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~-~~~vv~~~~~~~~~~l~a~v~ 378 (436)
T 3qov_A 322 RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELG-SNYLITLETVNNQDEMIVEVE 378 (436)
T ss_dssp EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEE-EEEEEEEEEETTEEEEEEEEE
T ss_pred ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcC-CcEEEEEEcCCCCcEEEEEEE
Confidence 6999999999998 599999999999999999999 999999887665554444433
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.7e-41 Score=365.79 Aligned_cols=289 Identities=17% Similarity=0.119 Sum_probs=225.0
Q ss_pred EeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-H
Q 006354 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A 327 (649)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 327 (649)
+.+.+++..... .......++++++|+|||||||.||||++||+++.+.+..... .+ ++.++|++++.+|+ +
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL 145 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence 345555554331 1123456789999999999999999999999998877655433 45 88899999999998 6
Q ss_pred HHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHH
Q 006354 328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404 (649)
Q Consensus 328 h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 404 (649)
|..++...+.++..|+++++.+ +..+.+. ++++++|+++++|+++..|.+.........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------- 207 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLDP------- 207 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc-------
Confidence 7777777788999999998743 3334444 999999999999999999887543210000
Q ss_pred HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccc
Q 006354 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484 (649)
Q Consensus 405 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~ 484 (649)
..++||.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus 208 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 249 (437)
T 2y27_A 208 --------------------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMG 249 (437)
T ss_dssp --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTE
T ss_pred --------------------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcC
Confidence 014899999999999999999999888999999999999854
Q ss_pred c-ccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCccccee
Q 006354 485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY 563 (649)
Q Consensus 485 ~-~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~ 563 (649)
. ++..... ... .++.|.+++.++|+|++++.. +++|+.|||+|+| .|++.| ++ +||+
T Consensus 250 ~~~~~~~~~-~~~-g~~~~~~~~~~~i~d~~~g~~---~~~g~~Gel~v~~------------~t~~~~---~~--~~y~ 307 (437)
T 2y27_A 250 PGVASECVE-TKD-GPTIWEDHFYPEIIDPETGEV---LPDGELGELVFTS------------LTKEAL---PI--IRYR 307 (437)
T ss_dssp EEEEECCTT-TCS-SCEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEE------------SSCSSS---CC--CSEE
T ss_pred CeeEEecCC-CCC-ceeEccCceEEEEEcCCCCCC---CCCCCccEEEEec------------CCcCCc---hh--heee
Confidence 3 3322211 111 245567899999999666654 7899999999998 244455 55 8999
Q ss_pred eCcEEEEcc-CCeE-----EEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354 564 TGDIGQVYP-DGCL-----EIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA 624 (649)
Q Consensus 564 TGDlg~~~~-dG~l-----~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~ 624 (649)
|||+|++++ ||++ +|+||.||+||+ +|++|+|.+||++|.+||+|. +++|++..++..+
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~-~~~vv~~~~~~~~ 372 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALA-PHYQIVLTKEGPL 372 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBC-SCCEEEEEEETTE
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcC-ccEEEEEeecCCC
Confidence 999999998 6985 999999999998 599999999999999999999 9998886554433
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2e-41 Score=365.95 Aligned_cols=289 Identities=17% Similarity=0.141 Sum_probs=225.0
Q ss_pred EeehHHHHhcCCCCCCCCCCCCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-H
Q 006354 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A 327 (649)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 327 (649)
+.+.+++..... .......++++++|+|||||||.||||++||+++.+....... .+ ++.++|++++.+|+ .
T Consensus 72 ~~~~~~l~~~~p---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 72 FSTKNDLRDNYP---FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CBCHHHHHTTTT---TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCcHHHHHhhCC---CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence 445556554321 1223456789999999999999999999999998877655433 56 88999999999998 5
Q ss_pred HHHHHHHHHHHHHhCceEEeCC---cccccccchhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHH
Q 006354 328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404 (649)
Q Consensus 328 h~~~~~~~~~~l~~G~~l~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 404 (649)
|..++...+.++..|+++++.+ +..+.+. ++++++|+++++|+++..|.+........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------- 208 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQL-----------IRDFEPKIILVTPSYMLNLIDEMVRQGMD-------- 208 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEECHHHHHHHHHHHHHcCCC--------
Confidence 7777777788899999998843 3334444 99999999999999999988753321000
Q ss_pred HHHHHHHHHhhhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHHhhcCCccccccCcccccc
Q 006354 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484 (649)
Q Consensus 405 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~ 484 (649)
...++||.+++||+++++++.+.+++.+|+++++.||+||+++
T Consensus 209 -------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 209 -------------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp -------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred -------------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence 0014899999999999999999999888999999999999754
Q ss_pred c-ccccCCCCCCCCccCCCcccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCccccee
Q 006354 485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFY 563 (649)
Q Consensus 485 ~-~~~~~~~~~~~~~vG~p~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~ 563 (649)
. .+..... ...+ .+.|.+++.++|+|++++.. +++|+.|||+|+|. |++.| ++ +||+
T Consensus 252 ~~~~~~~~~-~~~g-~~~~~~~~~~~i~d~~~g~~---~~~G~~Gel~v~~~------------t~~~~---p~--~~y~ 309 (443)
T 2y4o_A 252 PGVACECVE-TKDG-PVIWEDHFYPEIIDPVTGEV---LPDGSQGELVFTSL------------TKEAM---PV--IRYR 309 (443)
T ss_dssp EEEEEECTT-TCCS-EEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEES------------SCSSS---CC--SSEE
T ss_pred CeEEeccCC-CCCc-eEEccCCeEEEEEcCCCCCC---CCCCCceEEEEeCC------------CcccC---hh--heee
Confidence 3 3322211 1112 44567899999999666654 78999999999972 34455 55 8999
Q ss_pred eCcEEEEccC-CeE-----EEEecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcc
Q 006354 564 TGDIGQVYPD-GCL-----EIIDRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLA 624 (649)
Q Consensus 564 TGDlg~~~~d-G~l-----~i~GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~ 624 (649)
|||+|+++++ |++ +|+||.||+||++ |++|+|.|||++|.+||+|. +++|++..++..+
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~-G~~v~p~eiE~~l~~~p~V~-~~~vv~~~~~~~~ 374 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVR-GVNVFPSQIEEIVVALPLLS-GQFQITLSRDGHM 374 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEET-TEEECHHHHHHHHHTSTTEE-EEEEEEEEEETTE
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEEC-CEEECHHHHHHHHHhCcCcC-ccEEEEEecCCCC
Confidence 9999999999 987 8999999999985 99999999999999999999 9999887655433
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=5.2e-30 Score=269.69 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=173.3
Q ss_pred CCCCCeEEEEeecCCCCCcceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccCh-HHHHHHHHHHHHHHhCceEEe-
Q 006354 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGY- 347 (649)
Q Consensus 272 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~l~~- 347 (649)
..++++++|+|||||||.||||+++|+++.+.+.+....+ .++.++|++++++|+ +|+.++...+.++..|+.++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999999888654332 267889999999999 999999888888999994433
Q ss_pred -CCcc---ccccc---------chhhccCccccceeecceEEEechHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 006354 348 -GSTL---TMTDT---------SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414 (649)
Q Consensus 348 -~~~~---~l~~~---------~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 414 (649)
++|. .+... .......++..++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 2333 00000 0000002223489999999999999999987642110
Q ss_pred hhhccccccccchhhhHHHHHHHHHHHHhCCceEEEEecCCCCCHHHHHHHH-hhc-CCccccccCcccccccccccCCC
Q 006354 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN-ICM-GAPIGQAYGLTETCAGSTFSEWD 492 (649)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lr~i~~gG~~l~~~~~~~~~-~~~-~~~l~~~YG~TE~~~~~~~~~~~ 492 (649)
....++||.+++||+++++++.+.+. +.+ ++++++.||+||+++++..++.
T Consensus 227 --------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 --------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp --------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred --------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 00113799999999999999999999 888 8999999999999876643321
Q ss_pred CCCCCccCCC------cccceEEEEecCCCCcccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCc
Q 006354 493 DPSVGRVGPP------VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566 (649)
Q Consensus 493 ~~~~~~vG~p------~p~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGD 566 (649)
.++|+| +|+++++|+|++++.. +++|+.|||+|++. +++.|. .+|+|||
T Consensus 280 ----~~~G~~~~~~~~~~~~~v~ivD~~~g~~---vp~G~~GEl~vt~l------------~~~~~l------~ry~tgD 334 (369)
T 3hgu_A 280 ----TSESQQVIYDSFSPFITYDVVDSITAQT---VEYGERGNVIVTHL------------SPWAFY------PRVAERD 334 (369)
T ss_dssp ----CTTCSSCEEECCTTTEEEEEECTTTCSB---CCTTCEEEEEEEEE------------ETTEEE------EEEEEEE
T ss_pred ----ccCCCcccccCCCCCeEEEEECCCCCcC---CCCCCceEEEEEEc------------Cccccc------ccccCCc
Confidence 158999 9999999999656654 78999999999873 222221 4789999
Q ss_pred EEEEccC--C-------eEEEEecCCCeEEcCCcee
Q 006354 567 IGQVYPD--G-------CLEIIDRKKDIVKLQHGEY 593 (649)
Q Consensus 567 lg~~~~d--G-------~l~i~GR~dd~iki~~G~~ 593 (649)
++...+. | .+..++|.+++.||. |.+
T Consensus 335 ~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~-gv~ 369 (369)
T 3hgu_A 335 TAIRLPGVSGFAGDRLADIEPLKISEGRKVIE-GVY 369 (369)
T ss_dssp EEEEECCSTTCSSCEEEEEEECC-------------
T ss_pred eEEEecCCCCCcCcccccceeccccCCCceee-ecC
Confidence 9988542 3 367788888888886 653
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.54 E-value=6.5e-07 Score=96.95 Aligned_cols=136 Identities=15% Similarity=0.265 Sum_probs=84.3
Q ss_pred HhCCc---eEEEEecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCC-Cccc-ceEEEEecC
Q 006354 442 VLGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWD 514 (649)
Q Consensus 442 ~~g~~---Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~ 514 (649)
.++++ +..+..||- ..-...++... +.+++ ..|++||+-......+ ...+...+. .+|+ +-...++.+
T Consensus 299 ~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p--~~~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 299 RIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNP--MSKPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp HHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCT--TSCGGGCCEEECTTSCEEEEEEGG
T ss_pred HhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeeeeecCC--CCCcccCceeecCCcEEEEEEecc
Confidence 35677 455555663 22233444333 57766 9999999633222211 111122222 2233 233355433
Q ss_pred CCC------c------ccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc----CCeEEE
Q 006354 515 EGG------Y------KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEI 578 (649)
Q Consensus 515 ~~~------~------~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~----dG~l~i 578 (649)
+.. . ...+..|+.+||+|+.. .|.| -||+||+.+++. ..+|.|
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~------------------RYr~GD~v~v~~f~~~~p~i~~ 432 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY------------------RYRVGDILRVTGFHNSAPQFHF 432 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC------------------SEEEEEEEEEEEEETTEEEEEE
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh------------------heecCCEEEEeecCCCCcEEEE
Confidence 220 0 12277889999999653 2433 489999999973 468999
Q ss_pred EecCCCeEEcCCceeeeCChhhhHhc
Q 006354 579 IDRKKDIVKLQHGEYISLGKIPSTTT 604 (649)
Q Consensus 579 ~GR~dd~iki~~G~~v~~~eIE~~l~ 604 (649)
+||.+++|++. |++|++.+||+++.
T Consensus 433 ~gR~~~~l~~~-Geki~~~~v~~av~ 457 (609)
T 4b2g_A 433 VRRKNVLLSID-SDKTDEAELQKAVD 457 (609)
T ss_dssp EEETTCCBCSS-SCCBCHHHHHHHHH
T ss_pred EEecCCeEEcc-ccCCCHHHHHHHHH
Confidence 99999999985 99999999999986
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.53 E-value=4.6e-07 Score=98.01 Aligned_cols=137 Identities=19% Similarity=0.223 Sum_probs=86.1
Q ss_pred HhCCc---eEEEEecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCC-Cccc-ceEEEEecC
Q 006354 442 VLGGR---IRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPC-CYIKLVSWD 514 (649)
Q Consensus 442 ~~g~~---Lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~-~~v~i~d~~ 514 (649)
.++++ +..+..||-. .-...++..+ +.+++ ..|++||+.......+ ...+...|. .+|+ +-...++.+
T Consensus 294 ~lWPnl~~l~~~~~G~~~---~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p--~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 294 RLWPNTKYIETVVTGSMG---QYVPMLNYYCNDLPLVSTTYGSSETTFGINLDP--LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp HHSTTCCEEEEECSGGGG---GGHHHHHHHHTTCCEECCEEECSSCEEEECSCT--TSCGGGCCEEECTTSSEEEEEECS
T ss_pred HhCCCCcEEEEEcCCChH---HHHHHHHHHcCCCccccCccccccceeeeccCC--CCCcccCceeecCCcEEEEEEecc
Confidence 45678 6666667732 2233444433 67777 9999999632222221 111122232 2233 333455433
Q ss_pred CCC-----cccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEcc----CCeEEEEecCCCe
Q 006354 515 EGG-----YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEIIDRKKDI 585 (649)
Q Consensus 515 ~~~-----~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~----dG~l~i~GR~dd~ 585 (649)
+.. ....+..|+.+||+|+..+ |-| -||+||+.++.. ..++.|+||.+++
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~ 427 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVV 427 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC------------------SEECCEEEEEEEEETTEEEEEEEEETTEE
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee------------------eEEcCCEEEEcccCCCCcEEEEEEecCCE
Confidence 211 1122678899999997642 222 489999999975 4689999999999
Q ss_pred EEcCCceeeeCChhhhHhcc
Q 006354 586 VKLQHGEYISLGKIPSTTTV 605 (649)
Q Consensus 586 iki~~G~~v~~~eIE~~l~~ 605 (649)
+.+. |++++..+||+++.+
T Consensus 428 l~~~-Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 428 LSID-SDKTNEEDLFKAVSQ 446 (581)
T ss_dssp ECSS-SCCEEHHHHHHHHHH
T ss_pred EEee-eeECCHHHHHHHHHH
Confidence 9985 999999999999974
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.46 E-value=1.4e-06 Score=94.02 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=83.5
Q ss_pred HhCCceEEE--EecCCCCCHHHHHHHHhhc-CCccc-cccCcccccccccccCCCCCCCCccCC-Ccccc-eEEEEecCC
Q 006354 442 VLGGRIRFM--ICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPCC-YIKLVSWDE 515 (649)
Q Consensus 442 ~~g~~Lr~i--~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~p~~-~v~i~d~~~ 515 (649)
.+++++++| +.+|. +. .-...++..+ +.+++ ..|++||+-......+ ...++..+. .+|+. -...++.++
T Consensus 299 ~lWPnl~~i~~~~~G~-~~-~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p--~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 299 ALFPNAKYVYGIMTGS-ME-PYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTP--RLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp HHCTTCCCEEEECSGG-GG-GGHHHHHHHHTTSCEEECCEEETTEEEEECCCT--TSCTTTCCEEECTTSCEEEEEEC--
T ss_pred HhCCCCceEEEEeCCC-hH-HHHHHHHHHcCCCccccCceeccceeeeeecCC--CCCccccceeecCCcEEEEEEeccc
Confidence 467888633 33442 21 1233444443 67777 9999999633322222 111122222 23332 223443222
Q ss_pred CC-------cccCCCCCCccEEEEccccccccccCCCccchhhhccCCCcccceeeCcEEEEccC----CeEEEEecCCC
Q 006354 516 GG-------YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GCLEIIDRKKD 584 (649)
Q Consensus 516 ~~-------~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~~~~w~~TGDlg~~~~d----G~l~i~GR~dd 584 (649)
.. .+..+..|+.+||+|+..+ |-| -|++||+.++..- ..+.|+||.++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~ 433 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY------------------RYRLGDVVKVIGFYNNTPQLKFICRRNL 433 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS------------------SEEEEEEEEEEEEETTEEEEEEEEETTC
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee------------------eEEcCCEEEEecccCCCcEEEEEeecCC
Confidence 11 1122778999999997642 222 4899999999642 57999999999
Q ss_pred eEEcCCceeeeCChhhhHhcc
Q 006354 585 IVKLQHGEYISLGKIPSTTTV 605 (649)
Q Consensus 585 ~iki~~G~~v~~~eIE~~l~~ 605 (649)
++++. |++++..+||+++.+
T Consensus 434 ~l~~~-Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 434 ILSIN-IDKNTERDLQLSVES 453 (581)
T ss_dssp CBCSS-SCCBCHHHHHHHHHH
T ss_pred eEEee-eeECCHHHHHHHHHH
Confidence 99986 999999999999864
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.29 E-value=9.9e-08 Score=80.37 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=43.4
Q ss_pred ecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhh
Q 006354 580 DRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQ 631 (649)
Q Consensus 580 GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~ 631 (649)
.|.|||||++ |++|+|.|||++|.+||+|. +++|++.+++..++...++.
T Consensus 1 srADDmIiv~-G~nv~P~eIE~vl~~~p~v~-~~~vv~v~~~~~~~~~~~~V 50 (109)
T 3lax_A 1 SNADDMIILK-GVNIFPIQIETILLQFKELG-SDYLITLETAESNDEMTVEV 50 (109)
T ss_dssp CGGGSCEEET-TEEECHHHHHHHHHTCTTEE-EEEEEEEEEETTEEEEEEEE
T ss_pred CCcCEEEEEC-CEEECHHHHHHHHHhCCCcc-cceEEEEeccccceeEEEEE
Confidence 4899999995 99999999999999999999 99999998887775554443
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.11 E-value=4e-07 Score=76.57 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=43.4
Q ss_pred ecCCCeEEcCCceeeeCChhhhHhccCcccccceEEEecCCCCcccchhhhhhh
Q 006354 580 DRKKDIVKLQHGEYISLGKIPSTTTVLPLLFHHIRLWRNGPMKLASSTKIFQSC 633 (649)
Q Consensus 580 GR~dd~iki~~G~~v~~~eIE~~l~~~p~V~~~~~V~g~~~~~~~~~~~~~~~~ 633 (649)
||.||+|+++ |++|+|.+||++|.+||+|. ++++++.+++..++.+.++..+
T Consensus 1 GR~~D~Iiv~-G~nv~P~eIE~~l~~~p~v~-~~~~v~v~~~~~~e~l~~~ve~ 52 (109)
T 3gxs_A 1 SNADDMIILK-GVNIFPIQIETILLQFKELG-SDYLITLETAESNDEMTVEVEL 52 (109)
T ss_dssp CGGGSCEEET-TEEECHHHHHHHHHTCTTEE-EEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccCEEEEC-CEEECHHHHHHHHHhCCCcC-CcEEEEEEcCCCceEEEEEEEE
Confidence 8999999985 99999999999999999999 8988888776665555544443
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.39 E-value=1.7 Score=45.36 Aligned_cols=105 Identities=13% Similarity=-0.040 Sum_probs=83.0
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
.-.+|.+.+...+..++..+...|+.++|++..+++-+ ...+..+++++..|+.+++.++ ..++.+...+++.++++
T Consensus 103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 181 (436)
T 3qov_A 103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTA 181 (436)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCE
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCE
Confidence 34689999999998899889889999999999998753 4455677888999999887754 46788999999999999
Q ss_pred EEECchhHHHHHHhhc------cCCCccEEEEec
Q 006354 206 LICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (649)
Q Consensus 206 vi~~~~~~~~l~~~~~------~~~~~~~ii~~~ 233 (649)
++..+..+..+.+... ..+.++.+++-+
T Consensus 182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG 215 (436)
T 3qov_A 182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGA 215 (436)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEES
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeC
Confidence 9999988877665421 145667666644
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.37 E-value=1.9 Score=44.98 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=81.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
.-.+|.+.+...+..++..+...|+.++|++..+++.+ ...+...++++..|+.++++++ ..++.+...+++.++++
T Consensus 107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 185 (437)
T 2y27_A 107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDI 185 (437)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCE
Confidence 34689999998888888888889999999999998853 3445567888999999987755 47889999999999999
Q ss_pred EEECchhHHHHHHhhc------cCCCccEEEEec
Q 006354 206 LICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (649)
Q Consensus 206 vi~~~~~~~~l~~~~~------~~~~~~~ii~~~ 233 (649)
++..+..+..+.+... ..+.++.+++-+
T Consensus 186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 219 (437)
T 2y27_A 186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGA 219 (437)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcC
Confidence 9999988877655421 124566666544
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.66 E-value=1.7 Score=45.48 Aligned_cols=104 Identities=11% Similarity=-0.027 Sum_probs=81.3
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC--HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~--~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
-.+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++++ ..++++...+++.+++++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 4589999998888888888889999999999988864 3445567888899999888765 478899999999999999
Q ss_pred EECchhHHHHHHhhc------cCCCccEEEEec
Q 006354 207 ICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (649)
Q Consensus 207 i~~~~~~~~l~~~~~------~~~~~~~ii~~~ 233 (649)
+..+..+..+.+... ..+.++.+++-+
T Consensus 189 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 221 (443)
T 2y4o_A 189 LVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA 221 (443)
T ss_dssp EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred EECHHHHHHHHHHHHHcCCCcccCCceEEEECC
Confidence 999988777655321 124666666544
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.32 E-value=28 Score=36.55 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=74.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH-HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
.-.+|.+.+...+..... ..++.++|++..++|-... .+..+++++..|+..+..+ ...++.+...+++.+++++
T Consensus 180 gv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 255 (501)
T 3ipl_A 180 AVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI 255 (501)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred EEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence 346899998776665543 4589999999998886533 2344678888999888775 5788999999999999999
Q ss_pred EECchhHHHHHHhhcc-CCCccEEEE
Q 006354 207 ICDSKQLKKLSAVSSS-LKTIKNVIY 231 (649)
Q Consensus 207 i~~~~~~~~l~~~~~~-~~~~~~ii~ 231 (649)
......+..+.+.... ...++.++.
T Consensus 256 ~~~P~~~~~l~~~~~~~~~~lr~i~~ 281 (501)
T 3ipl_A 256 SLVPQTLNWLMQQGLHEPYNLQKILL 281 (501)
T ss_dssp EECHHHHHHHHHHTCCSCTTCCEEEE
T ss_pred EchHHHHHHHHhcCCCCcCcccEEEE
Confidence 9999988877664322 224565555
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.46 E-value=32 Score=36.57 Aligned_cols=102 Identities=10% Similarity=-0.093 Sum_probs=75.7
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HH-HHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCce
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vv-a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (649)
.-.+|.+.+...+...... .++.++|++...+|-+..+ .. .+++.+..|+..+..+ ...++.+...+++.+++
T Consensus 199 gV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 274 (539)
T 1mdb_A 199 LIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVT 274 (539)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCS
T ss_pred EEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCe
Confidence 3468999987776655443 4788999999888866433 33 5788999999888764 57789999999999999
Q ss_pred EEEECchhHHHHHHhh----ccCCCccEEEEec
Q 006354 205 TLICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~----~~~~~~~~ii~~~ 233 (649)
++......+..+.+.. ..++.++.+++-+
T Consensus 275 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG 307 (539)
T 1mdb_A 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG 307 (539)
T ss_dssp EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEES
T ss_pred EEEccHHHHHHHHhCccccCCCccceeEEEEcC
Confidence 9999998877765432 2346677666644
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=80.30 E-value=16 Score=39.12 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=74.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
.-.+|.+.+...+......+...++.++|++..++|-...+ ...+++.+ .|+..+..+ ...++.+...+++.++++
T Consensus 209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 286 (548)
T 2d1s_A 209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS 286 (548)
T ss_dssp CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence 34689999877666554443336889999998888865433 33466777 999888775 578899999999999999
Q ss_pred EEECchhHHHHHHhh----ccCCCccEEEE
Q 006354 206 LICDSKQLKKLSAVS----SSLKTIKNVIY 231 (649)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~ii~ 231 (649)
++.....+..+.+.. ..++.++.++.
T Consensus 287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 316 (548)
T 2d1s_A 287 VILVPTLFAILNKSELLNKYDLSNLVEIAS 316 (548)
T ss_dssp EEECHHHHHHHHHCSCGGGSCCTTCCEEEE
T ss_pred EEecHHHHHHHHhCcccccccccceeEEEE
Confidence 999998887776532 13456666665
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.46 E-value=29 Score=36.97 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=75.7
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHHH---HHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCce
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI---AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vv---a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (649)
.-.+|.+.+...+...+. ..++.++|++..++|....+-. .+++.+..|+..+..+ ...+..+...+++.+++
T Consensus 208 gv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 283 (544)
T 3o83_A 208 LIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVN 283 (544)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred eEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCC
Confidence 346899998877666554 3589999999999886654432 4788899999888764 56788888999999999
Q ss_pred EEEECchhHHHHHHhh----ccCCCccEEEEec
Q 006354 205 TLICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~----~~~~~~~~ii~~~ 233 (649)
++......+..+.+.. ..++.++.+++-+
T Consensus 284 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 284 MASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGG 316 (544)
T ss_dssp EEEECHHHHHHHHHHHTTTHHHHTTCCEEEEES
T ss_pred EEEechHHHHHHHhchhhccccCCcceEEEEcC
Confidence 9999998777665432 2345677776644
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=74.49 E-value=35 Score=36.08 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=73.1
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHH--HHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~v--va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
-.+|.+.+...+..++.. .++.++|++...+|-...+- ..+++.+ .|+..+.. +...++.+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 468999987776665544 48999999999888765432 2345555 88888866 56788999999999999999
Q ss_pred EECchhHHHHHHhh----ccCCCccEEEEec
Q 006354 207 ICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (649)
Q Consensus 207 i~~~~~~~~l~~~~----~~~~~~~~ii~~~ 233 (649)
......+..+.... ..++.++.++.-+
T Consensus 263 ~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 293 (517)
T 3r44_A 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGG 293 (517)
T ss_dssp EECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred EeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence 99998877765432 2345677666533
No 50
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=73.79 E-value=9.7 Score=38.36 Aligned_cols=87 Identities=11% Similarity=-0.031 Sum_probs=65.5
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCH--HHHHHHHHHHhcCCEEEEecCCCCHH--------------
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGED-------------- 192 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~vva~lA~~~~G~~~vpl~~~~~~~-------------- 192 (649)
..+|.+.+...+..++..+...|+.++|++..+++-+. .-+...++++..|+.+++.+ ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 45799999888887777777889999999999988632 33444555588999655543 3444
Q ss_pred ---------HHHHHHhhcCceEEEECchhHHHHH
Q 006354 193 ---------ALIHSLNETQVTTLICDSKQLKKLS 217 (649)
Q Consensus 193 ---------~l~~~l~~~~~~~vi~~~~~~~~l~ 217 (649)
++...+++.++.++++....+..+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6677899999999999988776654
No 51
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=70.79 E-value=75 Score=34.35 Aligned_cols=103 Identities=12% Similarity=-0.057 Sum_probs=75.1
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH--HHH-HHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCce
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFI-AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~vv-a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (649)
.-.+|.+.+...+...... .++.++|++..++|-+.. +.. .+++++..|+..+..+ ...+..+...+++.+++
T Consensus 201 gV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 276 (617)
T 3rg2_A 201 LIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVN 276 (617)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCC
T ss_pred EeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCc
Confidence 3568999887766655444 478999999999885543 332 4788888999888765 45778888899999999
Q ss_pred EEEECchhHHHHHHhhc------cCCCccEEEEecC
Q 006354 205 TLICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~~------~~~~~~~ii~~~~ 234 (649)
++......+..+.+... .++.++.+++-++
T Consensus 277 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 277 VTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp EEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred EEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 99999988776654321 3556777766443
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=68.85 E-value=35 Score=36.42 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=76.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH-HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
.-.+|.+.+...+......+...++.++|++..++|-... .+...++.+..|+..+.. +...++.+...+++.+++++
T Consensus 207 gV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~ 285 (550)
T 3rix_A 207 GVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-YRFEEELFLRSLQDYKIQSA 285 (550)
T ss_dssp EEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-SSCCHHHHHHHHHHTTCSEE
T ss_pred hhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-CCCCHHHHHHHHHHcCCeEE
Confidence 3468999887665554444434578899999988886643 245567788899988876 45788999999999999999
Q ss_pred EECchhHHHHHHhh----ccCCCccEEEEec
Q 006354 207 ICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (649)
Q Consensus 207 i~~~~~~~~l~~~~----~~~~~~~~ii~~~ 233 (649)
+.....+..+.+.. ..++.++.++.-+
T Consensus 286 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 316 (550)
T 3rix_A 286 LLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316 (550)
T ss_dssp EECHHHHHHHHHCCGGGGSCCTTCCEEEECS
T ss_pred EeCcHHHHHHHhCccccccCcccccEEEEec
Confidence 99998887776532 2345677666633
No 53
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=68.27 E-value=35 Score=35.88 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=72.9
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCce
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGH--NVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv--~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (649)
-.+|.+.+...+..++. ..++ .++|++...+|-...+ ...+++.+..|+..+..+ ...+..+...+++.+++
T Consensus 171 V~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 246 (504)
T 1t5h_X 171 AIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVT 246 (504)
T ss_dssp EEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred EEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHhCCe
Confidence 46888888766555433 3477 7889988888866443 345788899999888775 47788999999999999
Q ss_pred EEEECchhHHHHHHhh-c-----cCCCccEEEE
Q 006354 205 TLICDSKQLKKLSAVS-S-----SLKTIKNVIY 231 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~-~-----~~~~~~~ii~ 231 (649)
+++..+..+..+.+.. . .++.++.++.
T Consensus 247 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 247 SLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp EEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred EEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 9999998888776543 1 2455666665
No 54
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=65.55 E-value=66 Score=34.43 Aligned_cols=102 Identities=6% Similarity=0.051 Sum_probs=71.6
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEecC-CCCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYS-SLGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~ 205 (649)
-.+|.+ +.......+ ....++.++|++..+++-+..+ ...+++.+..|+..+.... ...++.+...+++.++++
T Consensus 224 V~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 224 AEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 467888 443211111 2446899999998888876543 3356788889998887754 678999999999999999
Q ss_pred EEECchhHHHHHHhh---ccCCCccEEEEec
Q 006354 206 LICDSKQLKKLSAVS---SSLKTIKNVIYFE 233 (649)
Q Consensus 206 vi~~~~~~~~l~~~~---~~~~~~~~ii~~~ 233 (649)
++..+..+..+.+.. ..++.++.++..+
T Consensus 301 ~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gG 331 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQDLSSYKFPHLQNCVTVG 331 (570)
T ss_dssp EEECHHHHHHHHTSCTTTCCCTTCCEEEEES
T ss_pred EeccHHHHHHHHhccccccccccceEEEEcC
Confidence 999998887776531 1245566666544
No 55
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=65.22 E-value=48 Score=35.24 Aligned_cols=103 Identities=9% Similarity=-0.086 Sum_probs=72.8
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (649)
-.+|.+.+...+.... .....++.++|++..++|-.-.. +..+++++..|+..+..++...++.+...+++.+++++.
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 4689988764433210 11234788999999888865332 234677888899998877667899999999999999999
Q ss_pred ECchhHHHHHHhh----ccCCCccEEEEe
Q 006354 208 CDSKQLKKLSAVS----SSLKTIKNVIYF 232 (649)
Q Consensus 208 ~~~~~~~~l~~~~----~~~~~~~~ii~~ 232 (649)
..+..+..+.+.. ..++.++.+++-
T Consensus 273 ~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 301 (541)
T 1v25_A 273 GVPTVWLALADYLESTGHRLKTLRRLVVG 301 (541)
T ss_dssp ECHHHHHHHHHHHHHHTCCCSSCCEEEEC
T ss_pred cchHHHHHHHhhhhccCCcchhccEEEEC
Confidence 9998877665432 234567776663
No 56
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=65.17 E-value=31 Score=36.33 Aligned_cols=101 Identities=12% Similarity=0.054 Sum_probs=73.8
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (649)
-.+|++.+...+.... ...++.++|++..++|-+..+ +..+++.+..|+..+.+++. ..++.+...+++.++++
T Consensus 162 v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 4689998877665544 345889999999998866432 45678889999998887653 56788999999999999
Q ss_pred EEECchhHHHHHHhh----ccCCCccEEEEe
Q 006354 206 LICDSKQLKKLSAVS----SSLKTIKNVIYF 232 (649)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~ii~~ 232 (649)
+...+..+..+.... ..++.++.++..
T Consensus 239 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~ 269 (512)
T 3fce_A 239 WTSTPSFAEMCLMEASFSESMLPNMKTFLFC 269 (512)
T ss_dssp EEECHHHHHHHTTSTTCSTTTSTTCCEEEEC
T ss_pred EEecHHHHHHHHhhccccchhCccccEEEEe
Confidence 999988776654322 224456666653
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=65.08 E-value=45 Score=35.81 Aligned_cols=101 Identities=7% Similarity=-0.069 Sum_probs=73.3
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEecCCC---CHHHHHHHHhhcC
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSL---GEDALIHSLNETQ 202 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~ 202 (649)
.-.+|.+.+...+..++. ..++.++|++..++|-...+ ...+++.+..|+..+...+.. .+..+...+++.+
T Consensus 184 gV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~ 260 (590)
T 3kxw_A 184 GVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYK 260 (590)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHT
T ss_pred EEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhC
Confidence 346899999877666544 45899999999999877554 334788899999888776532 5778888999999
Q ss_pred ceEEEECchhHHHHHHhh-------ccCCCccEEEE
Q 006354 203 VTTLICDSKQLKKLSAVS-------SSLKTIKNVIY 231 (649)
Q Consensus 203 ~~~vi~~~~~~~~l~~~~-------~~~~~~~~ii~ 231 (649)
++++.+.......+.+.. ..++.++.++.
T Consensus 261 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~ 296 (590)
T 3kxw_A 261 ATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFN 296 (590)
T ss_dssp CSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEE
T ss_pred CeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhh
Confidence 999988877766655431 12345666655
No 58
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=64.83 E-value=52 Score=34.59 Aligned_cols=101 Identities=7% Similarity=0.032 Sum_probs=73.6
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (649)
-.+|.+.+...+..++. ..++.++|++..++|-+..+ +..+++++..|+..+.+... ..++.+...+++.++++
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 46899998776655443 45889999999998876433 45678889999998877543 56788899999999999
Q ss_pred EEECchhHHHHHHhh----ccCCCccEEEEe
Q 006354 206 LICDSKQLKKLSAVS----SSLKTIKNVIYF 232 (649)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~ii~~ 232 (649)
++.....+..+.... ..++.++.++..
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~ 268 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFC 268 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEEC
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEe
Confidence 999998877665432 223455555553
No 59
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=60.55 E-value=53 Score=35.66 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=74.7
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEec-CCCCHHHHHHHHhhcCceEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIY-SSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~v 206 (649)
-.+|.+.+...+. .....++.++|++..+++-+.+. +..+++.+..|+.++..+ ....++.+...+++.+++++
T Consensus 182 V~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 257 (620)
T 4dg8_A 182 IACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSA 257 (620)
T ss_dssp EEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEE
T ss_pred EEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEE
Confidence 4688888754332 22345889999999998876543 445788899999888763 34678999999999999999
Q ss_pred EECchhHHHHHHhh-ccCCCccEEEEecC
Q 006354 207 ICDSKQLKKLSAVS-SSLKTIKNVIYFEN 234 (649)
Q Consensus 207 i~~~~~~~~l~~~~-~~~~~~~~ii~~~~ 234 (649)
......+..+.+.. ..++.++.+++-++
T Consensus 258 ~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 258 WLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred EccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 99988877765532 34567777776554
No 60
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=58.55 E-value=86 Score=33.22 Aligned_cols=100 Identities=11% Similarity=-0.081 Sum_probs=74.6
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (649)
-.+|.+.+...+..++.. .++.++|++..++|-...+ +..++.++..|+.++... ...++.+...+++.++++++
T Consensus 198 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 468999998877766654 4789999999888865432 333677788899888775 67889999999999999999
Q ss_pred ECchhHHHHHHhhc------cCCCccEEEEe
Q 006354 208 CDSKQLKKLSAVSS------SLKTIKNVIYF 232 (649)
Q Consensus 208 ~~~~~~~~l~~~~~------~~~~~~~ii~~ 232 (649)
.....+..+.+... .++.++.++.-
T Consensus 274 ~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 274 AVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp ECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred eCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 99988877765432 23456655553
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=57.32 E-value=75 Score=34.66 Aligned_cols=104 Identities=12% Similarity=0.001 Sum_probs=73.3
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHH--HHHHHHHhcCCEEEEecCC---CCHHHHHHHHhhcCc
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQV 203 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~v--va~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~ 203 (649)
-.+|.+.+...+.... -...++.++|++...++-+..+- ..+++.+..|+..+..+.. ..++++...+++.++
T Consensus 274 V~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v 351 (652)
T 1pg4_A 274 VLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351 (652)
T ss_dssp EEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTC
T ss_pred EEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCC
Confidence 3578877654432211 12358899999988887765443 4567899999999987642 467899999999999
Q ss_pred eEEEECchhHHHHHHhhc------cCCCccEEEEecC
Q 006354 204 TTLICDSKQLKKLSAVSS------SLKTIKNVIYFEN 234 (649)
Q Consensus 204 ~~vi~~~~~~~~l~~~~~------~~~~~~~ii~~~~ 234 (649)
+++.+....+..+.+... .++.++.++..++
T Consensus 352 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp SEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred eEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 999999988877765432 2456777666543
No 62
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=57.10 E-value=99 Score=32.30 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=67.0
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHH-HHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQG-CFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA-~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
-.+|.+.+...+..+.. ..++.++|++..++|-...+ +...+. .+..|+.++ +. ...++++...+++.+++++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI-AA-KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE-CS-SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE-ec-ccCHHHHHHHHHHHCCcEE
Confidence 46899998776665544 45899999999998865433 233334 444454444 43 6788999999999999999
Q ss_pred EECchhHHHHHHhh--ccCCCccEEEE
Q 006354 207 ICDSKQLKKLSAVS--SSLKTIKNVIY 231 (649)
Q Consensus 207 i~~~~~~~~l~~~~--~~~~~~~~ii~ 231 (649)
......+..+.+.. ..++.++.++.
T Consensus 253 ~~~p~~~~~l~~~~~~~~l~~lr~~~~ 279 (509)
T 3ivr_A 253 AEFAPMLGNILDQAAPAQLASLRAVTG 279 (509)
T ss_dssp EEETTHHHHHHHHCCGGGGTTCCEEEE
T ss_pred EecHHHHHHHHhcccccchhhhheecc
Confidence 98888777665532 33445555554
No 63
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=56.86 E-value=50 Score=32.91 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=66.7
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH-HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (649)
-.+|++.+...+..++. ..++.++|++..++|-... .+..++..+..|+..+..++...+ ...+++.++.++.
T Consensus 55 V~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEE
Confidence 46899998776665544 4589999999998886633 244456667778877777665432 3457888999999
Q ss_pred ECchhHHHHHHhh---ccCCCccEEEEe
Q 006354 208 CDSKQLKKLSAVS---SSLKTIKNVIYF 232 (649)
Q Consensus 208 ~~~~~~~~l~~~~---~~~~~~~~ii~~ 232 (649)
..+..+..+.+.. ..++.++.+++-
T Consensus 129 ~~P~~l~~ll~~~~~~~~l~~lr~v~~g 156 (358)
T 4gs5_A 129 MVPMQLQSILENSATSGQVDRLGKVLLG 156 (358)
T ss_dssp ECHHHHHHHHHCTTTGGGGGGGCSEEEC
T ss_pred cChHHHHHhhccccccccCCcceEEEEc
Confidence 9888777665432 234556666553
No 64
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=56.36 E-value=65 Score=34.41 Aligned_cols=102 Identities=9% Similarity=-0.040 Sum_probs=74.4
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCH-HHHHHHHHHHhcCCEEEEecC-CCCHHHHHHHHhhcCceEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV-EWFIAFQGCFRQSITVVTIYS-SLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~vva~lA~~~~G~~~vpl~~-~~~~~~l~~~l~~~~~~~v 206 (649)
-.+|.+.+...... ....++.++|++..++|-+. -....+++.+..|+.++.... ...+..+...+++.+++++
T Consensus 232 V~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 307 (570)
T 4gr5_A 232 VMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307 (570)
T ss_dssp EEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEE
T ss_pred EEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEE
Confidence 46899887543221 23348899999999888753 345567888899998887754 4678899999999999999
Q ss_pred EECchhHHHHHHh-hccCCCccEEEEecC
Q 006354 207 ICDSKQLKKLSAV-SSSLKTIKNVIYFEN 234 (649)
Q Consensus 207 i~~~~~~~~l~~~-~~~~~~~~~ii~~~~ 234 (649)
......+..+.+. ...++.++.++.-+.
T Consensus 308 ~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 308 QLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred EecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 9998887776553 345667777776443
No 65
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=55.39 E-value=64 Score=34.15 Aligned_cols=104 Identities=7% Similarity=0.006 Sum_probs=74.8
Q ss_pred eEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEccCCHH--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~--~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
-.+|.+.+...+........ ..++.++|++..++|-.-. +...+++.+..|+..+.. +...++.+...+++.++++
T Consensus 196 v~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~ 274 (536)
T 3ni2_A 196 VMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM-PKFEIGSLLGLIEKYKVSI 274 (536)
T ss_dssp EEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC-SSCCHHHHHHHHHHHTCCE
T ss_pred HHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc-CCCCHHHHHHHHHHhCCeE
Confidence 46899988766554433222 3478899999988886543 335568888999988876 4577899999999999999
Q ss_pred EEECchhHHHHHHhh----ccCCCccEEEEec
Q 006354 206 LICDSKQLKKLSAVS----SSLKTIKNVIYFE 233 (649)
Q Consensus 206 vi~~~~~~~~l~~~~----~~~~~~~~ii~~~ 233 (649)
+......+..+.+.. ..++.++.++.-+
T Consensus 275 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 275 APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGG 306 (536)
T ss_dssp EEECHHHHHHHHTCSCGGGSCCTTCCEEEEES
T ss_pred EEccHHHHHHHHhCcccccCCCccceEEEECC
Confidence 999998877765432 2345677666644
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=51.05 E-value=87 Score=34.27 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=69.6
Q ss_pred EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHHH--HHHHHHHhcCCEEEEecCC---CCHHHHHHHHhhcCce
Q 006354 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF--IAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQVT 204 (649)
Q Consensus 130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~v--va~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~~~ 204 (649)
.+|.+.+...+.... -...++.++|++...++-+...- ..+++.+..|+..+..+.. ..++++..++++.+++
T Consensus 281 ~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt 358 (663)
T 1ry2_A 281 QHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT 358 (663)
T ss_dssp EECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred EEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence 467776654332211 13468899999888777664332 4467889999998887642 4678999999999999
Q ss_pred EEEECchhHHHHHHhhc------cCCCccEEEEec
Q 006354 205 TLICDSKQLKKLSAVSS------SLKTIKNVIYFE 233 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~~------~~~~~~~ii~~~ 233 (649)
++.+.+..+..+.+... .++.++.++..+
T Consensus 359 ~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gG 393 (663)
T 1ry2_A 359 QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 393 (663)
T ss_dssp EEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECS
T ss_pred EEEecHHHHHHHHhcCccccccCCcCceEEEEEEc
Confidence 99999988777654321 234566666533
No 67
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=50.14 E-value=86 Score=32.83 Aligned_cols=85 Identities=8% Similarity=0.029 Sum_probs=65.0
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
-.+|.+.+...+..++..+ ++.++|++...+|.... ++..+++.+..|+..+.. +...++.+...+ +.+++++
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL-GRFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-SSCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-CCCChHHHHHHH-hhCCeEE
Confidence 4689999988777666554 78899999888876432 344578899999988876 456777777777 6799999
Q ss_pred EECchhHHHHHH
Q 006354 207 ICDSKQLKKLSA 218 (649)
Q Consensus 207 i~~~~~~~~l~~ 218 (649)
+.....+..+.+
T Consensus 248 ~~~P~~~~~l~~ 259 (505)
T 3nyq_A 248 FGVPTMYHRIAE 259 (505)
T ss_dssp EECHHHHHHHHH
T ss_pred EehHHHHHHHHH
Confidence 999888776655
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=48.47 E-value=91 Score=33.41 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=63.2
Q ss_pred HCCCCCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEec-CCCCHHHHHHHHhhcCceEEEECchhHHHHHHhh---cc
Q 006354 149 NFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIY-SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS---SS 222 (649)
Q Consensus 149 ~~Gv~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~---~~ 222 (649)
..++.+++++...++.+... +..+++.+..|+.++..+ ....++++...+++.++++++..+..+..+.... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~ 339 (580)
T 3etc_A 260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYN 339 (580)
T ss_dssp TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---C
T ss_pred hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCC
Confidence 35889999988887766443 334788899999988875 5678899999999999999999998877765432 12
Q ss_pred CCCccEEEEec
Q 006354 223 LKTIKNVIYFE 233 (649)
Q Consensus 223 ~~~~~~ii~~~ 233 (649)
++.++.++..+
T Consensus 340 l~~lr~i~~gG 350 (580)
T 3etc_A 340 FSTLKYAVVAG 350 (580)
T ss_dssp CTTCCEEEECS
T ss_pred CccceEEEEcc
Confidence 35566666543
No 69
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=48.46 E-value=45 Score=35.57 Aligned_cols=106 Identities=11% Similarity=-0.064 Sum_probs=76.0
Q ss_pred eEEeHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcC
Q 006354 129 EWQTYGEVFDRACSFASGLV-----NFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~-----~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (649)
-.+|.+.+...+..++..+. ...+...+++..+.+...+. +..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 45899999888887777654 24577888888777766543 4446778888988876654444567778899999
Q ss_pred ceEEEECchhHHHHHHhhccCCCccEEEEecC
Q 006354 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN 234 (649)
Q Consensus 203 ~~~vi~~~~~~~~l~~~~~~~~~~~~ii~~~~ 234 (649)
++++......+..+.......+.++.+++-+.
T Consensus 273 ~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 273 VTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp CCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred CCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 99999998876665444455667777776443
No 70
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=46.36 E-value=86 Score=30.91 Aligned_cols=66 Identities=5% Similarity=-0.174 Sum_probs=49.8
Q ss_pred HHHHCC-CCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch
Q 006354 146 GLVNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (649)
Q Consensus 146 ~L~~~G-v~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (649)
.+.+.| +++|+.|.+....+-.-....++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344556 488988766666777778888888888988877766655555667788999999999864
No 71
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=44.61 E-value=1.3e+02 Score=31.92 Aligned_cols=102 Identities=7% Similarity=-0.067 Sum_probs=71.3
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH--HHHHHHHHHhcCCEEEEecCC---CCHHHHHHHHhhcC
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSS---LGEDALIHSLNETQ 202 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~vva~lA~~~~G~~~vpl~~~---~~~~~l~~~l~~~~ 202 (649)
.-.+|.+.+...+..++.. ..++.++|++..++|-... ++..+++.+..|+..+.+.+. ..+..+...+++.+
T Consensus 193 gV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (576)
T 3gqw_A 193 GVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNR 270 (576)
T ss_dssp CEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTT
T ss_pred eEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhC
Confidence 3468999987665544321 2589999999998887654 345577888889888776542 46678889999999
Q ss_pred ceEEEECchhHHHHHHhh-------ccCCCccEEEE
Q 006354 203 VTTLICDSKQLKKLSAVS-------SSLKTIKNVIY 231 (649)
Q Consensus 203 ~~~vi~~~~~~~~l~~~~-------~~~~~~~~ii~ 231 (649)
++++++.......+.... ..++.++.++.
T Consensus 271 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~ 306 (576)
T 3gqw_A 271 GTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGI 306 (576)
T ss_dssp CCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEE
T ss_pred CeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhc
Confidence 999999887766554321 12455666655
No 72
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=44.24 E-value=88 Score=32.28 Aligned_cols=101 Identities=10% Similarity=-0.049 Sum_probs=68.9
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCC------CCEEEEEccCCH--HHHHHHHHHHhcCCEEEEecCC---CCHHHHHH
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNV------DTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSS---LGEDALIH 196 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~------gd~V~i~~~~~~--~~vva~lA~~~~G~~~vpl~~~---~~~~~l~~ 196 (649)
.-.+|.+.+...+..++..+ ++.+ +|++..++|-.- .++..+++.+..|+..+..++. ..++.+..
T Consensus 200 gV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 276 (480)
T 3t5a_A 200 GVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMH 276 (480)
T ss_dssp CEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHH
T ss_pred EEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHH
Confidence 34689999988777766655 4444 888888888664 4456788999999998887654 36788899
Q ss_pred HHhhcCceEEEECchhHHHHHHh--------hccCCCccEEEEe
Q 006354 197 SLNETQVTTLICDSKQLKKLSAV--------SSSLKTIKNVIYF 232 (649)
Q Consensus 197 ~l~~~~~~~vi~~~~~~~~l~~~--------~~~~~~~~~ii~~ 232 (649)
.+++.++. +......+..+... ...++.++.+++-
T Consensus 277 ~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~g 319 (480)
T 3t5a_A 277 LMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSG 319 (480)
T ss_dssp HTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEEC
T ss_pred HHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeec
Confidence 99999999 45545444333221 1234566666653
No 73
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=43.77 E-value=71 Score=34.09 Aligned_cols=100 Identities=9% Similarity=0.064 Sum_probs=69.7
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (649)
-.+|.+.+...+..++ ...++.++|++..+++-+... +..++..+..|+..+.+... ..+..+...+++.++++
T Consensus 200 V~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~ 276 (563)
T 1amu_A 200 TMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITV 276 (563)
T ss_dssp EEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCE
T ss_pred EEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcE
Confidence 4588988865544332 345899999999888765433 34567788899988876543 46788899999999999
Q ss_pred EEECchhHHHHHHhhccCCCccEEEEec
Q 006354 206 LICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (649)
Q Consensus 206 vi~~~~~~~~l~~~~~~~~~~~~ii~~~ 233 (649)
+......+..+.. ...+.++.+++-+
T Consensus 277 ~~~~P~~~~~l~~--~~~~~lr~~~~gG 302 (563)
T 1amu_A 277 ITLPPTYVVHLDP--ERILSIQTLITAG 302 (563)
T ss_dssp EEECHHHHTTSCT--TTCCSCSEEEEES
T ss_pred EEeCHHHHHHHHh--cccccccEEEEEE
Confidence 9988876554422 2345666666544
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=43.14 E-value=1.3e+02 Score=34.53 Aligned_cols=107 Identities=11% Similarity=0.022 Sum_probs=76.2
Q ss_pred ceEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEccCCH--HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCce
Q 006354 128 YEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~--~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 204 (649)
.-.+|.+.+...+........ ..++.++|++..++|-.. .+...+++.+..|+..+.. +...++.+...+++.+++
T Consensus 242 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t 320 (979)
T 3tsy_A 242 GVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM-PKFEINLLLELIQRCKVT 320 (979)
T ss_dssp BEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC-SSCCHHHHHHHHHHHTCC
T ss_pred EEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe-CCCCHHHHHHHHHHhCCe
Confidence 346899998766554433222 347889999998888653 3345578888999988866 457788999999999999
Q ss_pred EEEECchhHHHHHHhhc----cCCCccEEEEecCC
Q 006354 205 TLICDSKQLKKLSAVSS----SLKTIKNVIYFEND 235 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~~----~~~~~~~ii~~~~~ 235 (649)
++...+..+..+.+... .++.++.++.-+..
T Consensus 321 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 321 VAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp EEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred EEEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence 99999988777655332 24567766664443
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=40.89 E-value=1.2e+02 Score=29.91 Aligned_cols=71 Identities=6% Similarity=-0.135 Sum_probs=54.5
Q ss_pred HHHHHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch
Q 006354 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (649)
Q Consensus 141 ~~lA~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (649)
+.+.....+--+++|.+..+....+-.-+...++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444333333678887777888888889999999999998887777766666778899999999999754
No 76
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=40.45 E-value=2e+02 Score=29.90 Aligned_cols=103 Identities=4% Similarity=-0.004 Sum_probs=71.6
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHhhcCce
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVT 204 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~ 204 (649)
.-.+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+..... ..+.++...+.+.++.
T Consensus 162 gV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 240 (521)
T 3l8c_A 162 GVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVG 240 (521)
T ss_dssp EEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCS
T ss_pred EEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCc
Confidence 34689999876554433221 25788899888887766433 45677888899988877544 3678889999999999
Q ss_pred EEEECchhHHHHHHhh----ccCCCccEEEE
Q 006354 205 TLICDSKQLKKLSAVS----SSLKTIKNVIY 231 (649)
Q Consensus 205 ~vi~~~~~~~~l~~~~----~~~~~~~~ii~ 231 (649)
++.........+.... ..++.++.++.
T Consensus 241 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~ 271 (521)
T 3l8c_A 241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYF 271 (521)
T ss_dssp EEEECHHHHHHHHTSTTCSTTTCTTCCEEEE
T ss_pred EEEeCCCHHHHHhhhhccccccCccceEEEE
Confidence 9999988776654432 23455666655
No 77
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=33.17 E-value=1.5e+02 Score=30.87 Aligned_cols=85 Identities=8% Similarity=0.060 Sum_probs=62.5
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHH--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 128 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
.-.+|.+.+...+..++.. .++.++|++...+|-... +....+..+..|+..+.+ +...++.+...++ ++++
T Consensus 172 gV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~--~~t~ 245 (503)
T 4fuq_A 172 GAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL-PKFDPDKILDLMA--RATV 245 (503)
T ss_dssp EEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC-SSCCHHHHHHHHT--TCCE
T ss_pred EEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc-CCCCHHHHHHHHh--hcCE
Confidence 3468999987776655543 588999999988876432 244566777888888766 4677888888887 7888
Q ss_pred EEECchhHHHHHH
Q 006354 206 LICDSKQLKKLSA 218 (649)
Q Consensus 206 vi~~~~~~~~l~~ 218 (649)
++.....+..+.+
T Consensus 246 ~~~~P~~~~~l~~ 258 (503)
T 4fuq_A 246 LMGVPTFYTRLLQ 258 (503)
T ss_dssp EEECHHHHHHHHT
T ss_pred EEEHHHHHHHHHh
Confidence 8888887766643
No 78
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=31.71 E-value=85 Score=33.05 Aligned_cols=87 Identities=10% Similarity=0.008 Sum_probs=64.3
Q ss_pred eEEeHHHH-HHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH--HHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEV-FDRACSFASGLVNFGHNVDTRAAILAETCVEW--FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL-~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
-.+|.+.+ ...... .....++.++|++..++|-...+ ...++..+..|+..+.+++...++.+...+++.++++
T Consensus 201 v~~sh~~l~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~ 277 (529)
T 2v7b_A 201 TVHTHANLYWTAELY---AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277 (529)
T ss_dssp EEEEHHHHHHHHHHT---CCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSE
T ss_pred EEEEhhHHHHHHHHH---hhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEE
Confidence 46889887 332211 11224789999999888876544 3345778889999888777788999999999999999
Q ss_pred EEECchhHHHHHH
Q 006354 206 LICDSKQLKKLSA 218 (649)
Q Consensus 206 vi~~~~~~~~l~~ 218 (649)
++.....+..+..
T Consensus 278 ~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 278 FYGVPTLYANMLV 290 (529)
T ss_dssp EEECHHHHHHHHT
T ss_pred EEecHHHHHHHHh
Confidence 9999887766543
No 79
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=29.86 E-value=1.3e+02 Score=35.91 Aligned_cols=103 Identities=7% Similarity=0.110 Sum_probs=73.4
Q ss_pred eEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCCHHH-HHHHHHHHhcCCEEEEecCC--CCHHHHHHHHhhcCceE
Q 006354 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW-FIAFQGCFRQSITVVTIYSS--LGEDALIHSLNETQVTT 205 (649)
Q Consensus 129 ~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-vva~lA~~~~G~~~vpl~~~--~~~~~l~~~l~~~~~~~ 205 (649)
-.+|.+.+... .......++.++|++..+.+-+.+. +..+++.+..|+..+..++. ..++.+...+++.++++
T Consensus 625 V~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~ 700 (1304)
T 2vsq_A 625 NITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNV 700 (1304)
T ss_dssp EEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCE
T ss_pred EEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcE
Confidence 46888887532 2222345889999999888877654 34578888899988877653 67889999999999999
Q ss_pred EEECchhHHHHHHhh-ccCCCccEEEEecCC
Q 006354 206 LICDSKQLKKLSAVS-SSLKTIKNVIYFEND 235 (649)
Q Consensus 206 vi~~~~~~~~l~~~~-~~~~~~~~ii~~~~~ 235 (649)
+......+..+.... ...+.++.+++-++.
T Consensus 701 ~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 701 MFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp EEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred EEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 999888777665432 223566777665543
No 80
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.69 E-value=1.2e+02 Score=30.35 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=40.6
Q ss_pred HHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCC-----CCHHHHHHHHhhcC--ceEEEE
Q 006354 146 GLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS-----LGEDALIHSLNETQ--VTTLIC 208 (649)
Q Consensus 146 ~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~--~~~vi~ 208 (649)
.|...++++||.|.+-.+....+. .++...|+.++.++.+ ..++.+...+...+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 345557899999988777665543 4566789887766532 46788888774334 666664
No 81
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=26.58 E-value=88 Score=29.75 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEEccC
Q 006354 141 CSFASGLVNFGHNVDTRAAILAET 164 (649)
Q Consensus 141 ~~lA~~L~~~Gv~~gd~V~i~~~~ 164 (649)
..|...|+++||++||.|.|.+.-
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 456678999999999999999764
No 82
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=26.53 E-value=2.9e+02 Score=26.76 Aligned_cols=65 Identities=8% Similarity=-0.110 Sum_probs=46.1
Q ss_pred HHHCC-CCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch
Q 006354 147 LVNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (649)
Q Consensus 147 L~~~G-v~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (649)
+.+.| +++|....+....+-.-....++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 466754445566777777777888899988877666544455567788899999999864
No 83
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=26.33 E-value=2.7e+02 Score=28.41 Aligned_cols=63 Identities=5% Similarity=-0.139 Sum_probs=48.4
Q ss_pred HHCC-CCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECc
Q 006354 148 VNFG-HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (649)
Q Consensus 148 ~~~G-v~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (649)
.+.| +++|....|....+-.-....+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4566 47776666666678788888888999999887776665566667788899999999975
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=24.85 E-value=2.8e+02 Score=26.95 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=50.7
Q ss_pred EeHHHHHHHHHH--HH-HHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354 131 QTYGEVFDRACS--FA-SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (649)
Q Consensus 131 ~TY~eL~~~~~~--lA-~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (649)
+++.|....... .| +.|+..++++|++|+|...-+.-...++++....|+.++.++. +++++ ......++..+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r~-~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDKL-NLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHHH-HHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHHh-hhhhhcCCeEEE
Confidence 566664433222 22 3355568999999999988777777777777777777776654 34443 456677888777
Q ss_pred ECc
Q 006354 208 CDS 210 (649)
Q Consensus 208 ~~~ 210 (649)
-..
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 643
No 85
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=23.89 E-value=2.1e+02 Score=27.63 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=48.0
Q ss_pred EeHHHHHHHHHH--HH-HHHHHCCCCCCCEEEEEc-cCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEE
Q 006354 131 QTYGEVFDRACS--FA-SGLVNFGHNVDTRAAILA-ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (649)
Q Consensus 131 ~TY~eL~~~~~~--lA-~~L~~~Gv~~gd~V~i~~-~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (649)
+++.+....... .| +.|...++++|++|+|.. .-..-..++.+|- ..|+.++.+. +.++ ...+++.++..+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 567665443222 22 345556899999999997 4555666666654 5688766553 3455 456677888877
Q ss_pred EECc
Q 006354 207 ICDS 210 (649)
Q Consensus 207 i~~~ 210 (649)
+...
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7544
No 86
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=23.58 E-value=3.8e+02 Score=25.70 Aligned_cols=64 Identities=9% Similarity=-0.079 Sum_probs=44.2
Q ss_pred HHHCCC-CCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch
Q 006354 147 LVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (649)
Q Consensus 147 L~~~Gv-~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (649)
+.+.|. ++|+.|.. ...+-.-....++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344554 66776655 55666666667777899988877666544445556778899999999863
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.99 E-value=2.7e+02 Score=27.33 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEccCCH------HHHHHHHHHH-hcCCEEEEecCCCC-------------HHHHHHHHhhcCceEEEEC
Q 006354 151 GHNVDTRAAILAETCV------EWFIAFQGCF-RQSITVVTIYSSLG-------------EDALIHSLNETQVTTLICD 209 (649)
Q Consensus 151 Gv~~gd~V~i~~~~~~------~~vva~lA~~-~~G~~~vpl~~~~~-------------~~~l~~~l~~~~~~~vi~~ 209 (649)
-+++||+|+|++|.+. +-+-.....+ ..|..++.- +... .+++..++.+-++++|+|.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~-~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEG-SLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEEC-TTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEc-ccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4789999999999884 2232223333 467766642 2211 3345555566667777774
No 88
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=21.42 E-value=4e+02 Score=25.78 Aligned_cols=78 Identities=6% Similarity=-0.105 Sum_probs=50.1
Q ss_pred EeHHHHHHHHHH---HHHHHHHC--CCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceE
Q 006354 131 QTYGEVFDRACS---FASGLVNF--GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT 205 (649)
Q Consensus 131 ~TY~eL~~~~~~---lA~~L~~~--Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 205 (649)
+++.+....... .-+.|.+. ++++|++|+|...-..-..++.+|-..-|+.++.++. +++++. .+++.++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~~-~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRLA-LAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHHH-HHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHH-HHHHcCCCE
Confidence 566655422221 22345553 7999999999988556777777777665666666653 344544 557788888
Q ss_pred EEECch
Q 006354 206 LICDSK 211 (649)
Q Consensus 206 vi~~~~ 211 (649)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876544
No 89
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=21.40 E-value=1.3e+02 Score=28.66 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCCCCEEEEEccC
Q 006354 142 SFASGLVNFGHNVDTRAAILAET 164 (649)
Q Consensus 142 ~lA~~L~~~Gv~~gd~V~i~~~~ 164 (649)
.|.+.|+++||++||.|.|.+.-
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 35668899999999999998753
No 90
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.33 E-value=3e+02 Score=27.51 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=34.9
Q ss_pred CCCCCCEEEEEccCCH------HHHHHHHHHH-hcCCEEEEecCCCC------------HHHHHHHHhhcCceEEEEC
Q 006354 151 GHNVDTRAAILAETCV------EWFIAFQGCF-RQSITVVTIYSSLG------------EDALIHSLNETQVTTLICD 209 (649)
Q Consensus 151 Gv~~gd~V~i~~~~~~------~~vva~lA~~-~~G~~~vpl~~~~~------------~~~l~~~l~~~~~~~vi~~ 209 (649)
-+++||+|+|++|.+. +-+-.....+ ..|..++.-.-... .+++..++.+-++++|+|.
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 5899999999999874 2232223333 46776664321111 3345555566667777774
No 91
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.89 E-value=2.7e+02 Score=27.21 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEccCCH------HHHHHHHH-HHhcCCEEEEecCCC------------CHHHHHHHHhhcCceEEEEC
Q 006354 151 GHNVDTRAAILAETCV------EWFIAFQG-CFRQSITVVTIYSSL------------GEDALIHSLNETQVTTLICD 209 (649)
Q Consensus 151 Gv~~gd~V~i~~~~~~------~~vva~lA-~~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~ 209 (649)
-+++||+|+|++|.+. +.+-.... +-..|..++.-..-. -.+++..++.+-+++.|+|.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4789999999999853 22222222 234566655432111 13345555566666666664
No 92
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=20.66 E-value=1.5e+02 Score=28.41 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=22.8
Q ss_pred EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEccCC
Q 006354 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165 (649)
Q Consensus 130 ~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 165 (649)
.+|-.+| ...|+++||++||.|.|.+.-+
T Consensus 21 ~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 21 LVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp EECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred CcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 5676655 5578899999999999987643
No 93
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=20.55 E-value=2.9e+02 Score=27.11 Aligned_cols=78 Identities=9% Similarity=-0.029 Sum_probs=48.0
Q ss_pred EeHHHHHHHH--HHHH-HHHHH-CCCCCCCEEEEEccC-CHHHHHHHHHHHhcCCEEE-EecCCCCHHHHHHHHhhcCce
Q 006354 131 QTYGEVFDRA--CSFA-SGLVN-FGHNVDTRAAILAET-CVEWFIAFQGCFRQSITVV-TIYSSLGEDALIHSLNETQVT 204 (649)
Q Consensus 131 ~TY~eL~~~~--~~lA-~~L~~-~Gv~~gd~V~i~~~~-~~~~vva~lA~~~~G~~~v-pl~~~~~~~~l~~~l~~~~~~ 204 (649)
+++.+..... -..| +.|.+ .++++|++|+|.... ..-..++.+|- ..|+..+ .++..-..++....++..++.
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5676654321 1222 24444 489999999999984 45666666665 4587544 444444444445566788998
Q ss_pred EEEEC
Q 006354 205 TLICD 209 (649)
Q Consensus 205 ~vi~~ 209 (649)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 88753
No 94
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.14 E-value=2.5e+02 Score=27.45 Aligned_cols=73 Identities=10% Similarity=-0.061 Sum_probs=46.0
Q ss_pred EeHHHHHHHHHH--H-HHHHHHCCCCCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEE
Q 006354 131 QTYGEVFDRACS--F-ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (649)
Q Consensus 131 ~TY~eL~~~~~~--l-A~~L~~~Gv~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (649)
+++.+....... . -+.|...++++|++|+|...-..-..++.+|- ..|+.++.++.+- +++. .+++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHHH-HHHhcCCCeec
Confidence 566665422111 1 23466679999999999987555666666665 5688776665443 3333 44567888887
No 95
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=20.10 E-value=4e+02 Score=25.42 Aligned_cols=64 Identities=5% Similarity=-0.130 Sum_probs=42.9
Q ss_pred HHHCCC-CCCCEEEEEccCCHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHhhcCceEEEECch
Q 006354 147 LVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (649)
Q Consensus 147 L~~~Gv-~~gd~V~i~~~~~~~~vva~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (649)
+.+.|. ++|+.|.. ...+-.-....++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344554 66766554 55555556667777889988776655544444556678899999999864
Done!