BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006355
         (649 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MC4|A Chain A, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
           TRANSFERASE Hexapeptide Repeat: Serine
           O-Acetyltransferase From Brucella Melitensis
 pdb|3MC4|B Chain B, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
           TRANSFERASE Hexapeptide Repeat: Serine
           O-Acetyltransferase From Brucella Melitensis
          Length = 287

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 19/103 (18%)

Query: 243 MKSSMDQISLMIHSLRSEATKSED--------MYAQLLEIQESVRLSFLNRFLDFAGHLE 294
           M + +DQ+  + HS+R+EA ++          +YA +L  Q S+  + ++R  +  GH +
Sbjct: 22  MNAGLDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILN-QPSLEEAVMHRIAERLGHPD 80

Query: 295 HIASELAQN-----KSNKESQH-----LQNGYSSDPCTESLSD 327
             A  L Q      ++N E  H     +Q  Y  DP      D
Sbjct: 81  VSADILRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMD 123


>pdb|2RAN|A Chain A, Rat Annexin V Crystal Structure: Ca2+-Induced
           Conformational Changes
          Length = 316

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 253 MIHSLRSEAT-KSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQH 311
           +++ ++SE T K E +   L++         L   L  AG  E + +E+  +++ +E + 
Sbjct: 62  LVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRA 121

Query: 312 LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVI 343
           ++  Y  +  +    D+ G     +QR+L+V+
Sbjct: 122 IKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVL 153


>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
 pdb|2IE6|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Xenon
 pdb|2IE7|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Nitrous Oxide
          Length = 318

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 253 MIHSLRSEAT-KSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQH 311
           +++ ++SE T K E +   L++         L   L  AG  E + +E+  +++ +E + 
Sbjct: 62  LVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRA 121

Query: 312 LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVI 343
           ++  Y  +  +    D+ G     +QR+L+V+
Sbjct: 122 IKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVL 153


>pdb|1A8A|A Chain A, Rat Annexin V Complexed With Glycerophosphoserine
 pdb|1A8B|A Chain A, Rat Annexin V Complexed With Glycerophosphoethanolamine
          Length = 319

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 253 MIHSLRSEAT-KSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQH 311
           +++ ++SE T K E +   L++         L   L  AG  E + +E+  +++ +E + 
Sbjct: 63  LVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRA 122

Query: 312 LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVI 343
           ++  Y  +  +    D+ G     +QR+L+V+
Sbjct: 123 IKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVL 154


>pdb|1N44|A Chain A, Crystal Structure Of Annexin V R23e Mutant
          Length = 319

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 253 MIHSLRSEAT-KSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQH 311
           +++ ++SE T K E +   L++         L   L  AG  E + +E+  +++ +E + 
Sbjct: 63  LVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRA 122

Query: 312 LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVI 343
           ++  Y  +  +    D+ G     +QR+L+V+
Sbjct: 123 IKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVL 154


>pdb|1N41|A Chain A, Crystal Structure Of Annexin V K27e Mutant
          Length = 319

 Score = 28.9 bits (63), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 253 MIHSLRSEAT-KSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQH 311
           +++ ++SE T K E +   L++         L   L  AG  E + +E+  +++ +E + 
Sbjct: 63  LVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRA 122

Query: 312 LQNGYSSDPCTESLSDIPGSVVDPHQRLLIVI 343
           ++  Y  +  +    D+ G     +QR+L+V+
Sbjct: 123 IKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVL 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,256,195
Number of Sequences: 62578
Number of extensions: 725571
Number of successful extensions: 2022
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 26
length of query: 649
length of database: 14,973,337
effective HSP length: 105
effective length of query: 544
effective length of database: 8,402,647
effective search space: 4571039968
effective search space used: 4571039968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)