BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006355
(649 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S3U9|EXOC2_ARATH Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1
SV=1
Length = 1090
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/654 (64%), Positives = 519/654 (79%), Gaps = 30/654 (4%)
Query: 1 METLHNELHERAMSDARWLQIQQDLNQSSGADYSVTC----GNIQPIDSLPVELSGEEVD 56
+E L N+ HE+A+SDA+W QIQQ+ G YS T N +D VE EE+D
Sbjct: 462 VEILRNDTHEKAISDAKWQQIQQN-----GVSYSDTASSNENNAVQVDLQSVEFPSEEID 516
Query: 57 AFRGRYIRRLTAVLIHHIPAFWKVALSVFSGKFAKSSQVSSESNLNASGNKAEEKVGEGK 116
+GRYI+RLTAVL+HHIP FWK A+S+FSGKFAKSSQV+ + S NKAEEKV E +
Sbjct: 517 ILKGRYIKRLTAVLVHHIPVFWKTAISIFSGKFAKSSQVT-----DTSANKAEEKVTEAR 571
Query: 117 YSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKES 176
YS HSL+EVAGMIR TISVYE KV++TF D ++S ILR +M DAI E+SKACQAFEAKES
Sbjct: 572 YSTHSLEEVAGMIRKTISVYEAKVNSTFCDFDESCILRPFMSDAINEVSKACQAFEAKES 631
Query: 177 APPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGISKDETWIPVSILERNKSPYTISYLP 236
P AV+ LR +QAEITKIYI RLCSWM+ ST+GISK+ETWIPVSILERN+SPY ISYLP
Sbjct: 632 TPHSAVVALRKIQAEITKIYIQRLCSWMRASTEGISKEETWIPVSILERNRSPYAISYLP 691
Query: 237 LAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHI 296
LAFRS++ S M+Q++LMI S++SEA KSEDM+AQ+ EI SVRL+FLN FLDFA HLE I
Sbjct: 692 LAFRSVIVSGMEQVNLMILSVKSEAAKSEDMFAQIEEIIISVRLAFLNCFLDFAAHLEQI 751
Query: 297 ASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSE 356
++L+Q+ S ++ + +NGYS + E ++ GSV+DPH+RLL+V+SNIGYCKDEL+SE
Sbjct: 752 GADLSQSTSRQD--NWKNGYSDEHQEEPSANTYGSVIDPHRRLLMVLSNIGYCKDELASE 809
Query: 357 LYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSG 416
LYNK+K WLQSR+K+++ +D+QDL+MSFSGL EKVLE YTFAKANLIRTAAT +LLDSG
Sbjct: 810 LYNKFKYTWLQSRDKNEDSSDLQDLIMSFSGLGEKVLEHYTFAKANLIRTAATNYLLDSG 869
Query: 417 VQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILVEGLIDTFLSLFDEN 476
+QWG+AP VKG+RD AVELLHTLVAVHAEVFAGAKPLLDK LG+L+EGLIDTFLS+ +EN
Sbjct: 870 IQWGSAPQVKGIRDAAVELLHTLVAVHAEVFAGAKPLLDKILGVLIEGLIDTFLSVVEEN 929
Query: 477 QSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVEN 536
+S++L+S+DANGFCQLM EL+YFET+L YFT A ESLK+LQG +LE A S++EAVE
Sbjct: 930 RSSDLRSIDANGFCQLMFELEYFETVLYSYFTSAATESLKSLQGTVLEIAIESISEAVET 989
Query: 537 PGHHRRPTRGSEDALADERQQGMTVSPDDLIALAQQYSSELLQAELERTRINTACFVESL 596
PGH+RRPTRGSED ++D++Q +VS DDL+AL +Q S+ELLQ ELERTR+NTACF ES
Sbjct: 990 PGHNRRPTRGSEDTVSDDKQ---SVSADDLLALTKQCSNELLQQELERTRVNTACFAESA 1046
Query: 597 PLDSVPESAKVAY-GFRGSMDPSGRNYPAMDSPSRNYRNAQPTGSPSFARHRRR 649
PL+S P K Y FRGS MDSPSRNYR +Q +GSP AR RRR
Sbjct: 1047 PLESTPPLPKATYSSFRGS----------MDSPSRNYRGSQSSGSPINARPRRR 1090
>sp|Q96KP1|EXOC2_HUMAN Exocyst complex component 2 OS=Homo sapiens GN=EXOC2 PE=1 SV=1
Length = 924
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 53/471 (11%)
Query: 59 RGRYIRRLTAVLIHHIPAFWKVALS-----VFSGKFAKSSQVSSESNLNASGNKAEEKVG 113
R ++ +LT +++ +P FWK+ +S +FS KS Q+ N+ N ++ +
Sbjct: 448 RVAFVEKLTKLVLSQLPNFWKLWISYVNGSLFSETAEKSGQIERSKNVRQRQNDFKKMIQ 507
Query: 114 EGKYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEA 173
E +S+ L A ++ +I E K + + + ++ AI+ + ++ A
Sbjct: 508 EVMHSLVKLTRGA-LLPLSIRDGEAKQYGGWE--VKCELSGQWLAHAIQTVRLTHESLTA 564
Query: 174 KESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGISK---DETWIPVSILERNKSPY 230
E + +L+T+Q I + + + + +Q + + I + E WI
Sbjct: 565 LE----IPNDLLQTIQDLILDLRVRCVMATLQHTAEEIKRLAEKEDWIV--------DNE 612
Query: 231 TISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDFA 290
++ LP F + S+ + ++ EA+ ++ Q +E +LS +N F
Sbjct: 613 GLTSLPCQFEQCIVCSLQSLKGVLECKPGEAS----VFQQPKTQEEVCQLS-INIMQVFI 667
Query: 291 GHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSV-----VDPHQRLLIVISN 345
LE +++ + ++ ++ HL SS D+ GS+ + QRLLIV+SN
Sbjct: 668 YCLEQLST---KPDADIDTTHLSVDVSS-------PDLFGSIHEDFSLTSEQRLLIVLSN 717
Query: 346 IGYCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIR 405
Y + + ++ Q EK + + + S L++++ E Y KA+ I
Sbjct: 718 CCYLERHTFLNIAEHFEKHNFQGIEKITQVS-----MASLKELDQRLFENYIELKADPIV 772
Query: 406 TAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILVEGL 465
+ + W GVR+ E L ++AVHAEVF +K L+ + L ++E +
Sbjct: 773 GSLEPGIYAGYFDWKDCLPPTGVRNYLKEALVNIIAVHAEVFTISKELVPRVLSKVIEAV 832
Query: 466 IDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLK 516
+ L + S NG Q LE+ + Y T +++ S K
Sbjct: 833 SEELSRLM-----QCVSSFSKNGALQARLEICALRDTVAVYLTPESKSSFK 878
>sp|O54921|EXOC2_RAT Exocyst complex component 2 OS=Rattus norvegicus GN=Exoc2 PE=1 SV=1
Length = 924
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 103/469 (21%), Positives = 195/469 (41%), Gaps = 49/469 (10%)
Query: 59 RGRYIRRLTAVLIHHIPAFWKVALS-----VFSGKFAKSSQVSSESNLNASGNKAEEKVG 113
R ++ +LT +++ +P FWK+ +S +FS KS Q+ N+ N ++ +
Sbjct: 448 RVAFVEKLTKLVLSQLPNFWKLWISYVNGSLFSETAEKSGQIERSKNVRQRQNDFKKMIQ 507
Query: 114 EGKYSIHSLDEVAGMIRNTISVYEIKVHN--TFNDLE-DSNILRSYMRDAIEEISKACQA 170
E +HSL +IR + + ++ + + E + + ++ I+ I ++
Sbjct: 508 E---VMHSL---VKLIRGALLPFSLREGDGRQYGGWEVQAELSGQWLAHVIQTIRLTYES 561
Query: 171 FEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGISK---DETWIPVSILERNK 227
A E + +L+ +Q I + I + +Q + + I + E WI
Sbjct: 562 LTALE----IPNDMLQIIQDLILDLRIHCIMVTLQHTAEEIKRLAEKEDWIV-------- 609
Query: 228 SPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFL 287
++ LP F + S+ + ++ EA+ Q + QE V ++
Sbjct: 610 DNEGLTSLPCQFEQSIVHSLQSLKGVVDCKPGEAS-----VFQQPKTQEEVCQLCISIMQ 664
Query: 288 DFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIG 347
F LE +++ + ++ ++ HL SS S+ + G + QRLLIV+SN
Sbjct: 665 VFIYCLEQLST---KPDADIDTTHLSVDVSSPDLFGSIHEDFG--LTSEQRLLIVLSNCC 719
Query: 348 YCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTA 407
Y + + ++ Q EK + + + S L++++ E Y KA+ I +
Sbjct: 720 YLERHTFLNIAEHFEKHNFQGIEKITQVS-----MASLKELDQRLFENYIELKADPIVGS 774
Query: 408 ATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILVEGLID 467
T + W GVR+ E L ++AVHAEVF +K L+ + L ++E + +
Sbjct: 775 LETGIYAGYFDWKDCLPPAGVRNYLKEALVNIIAVHAEVFTISKELVPRVLARVIEAVSE 834
Query: 468 TFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLK 516
L + S NG Q LE+ + Y T ++R S K
Sbjct: 835 ELSRLM-----QCVSSFSRNGALQARLEICALRDTVAIYLTPESRSSFK 878
>sp|Q9D4H1|EXOC2_MOUSE Exocyst complex component 2 OS=Mus musculus GN=Exoc2 PE=1 SV=1
Length = 924
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 105/474 (22%), Positives = 195/474 (41%), Gaps = 59/474 (12%)
Query: 59 RGRYIRRLTAVLIHHIPAFWKVALS-----VFSGKFAKSSQVSSESNLNASGNKAEEKVG 113
R ++ +LT +++ +P FWK+ +S +FS KS Q N+ N ++ +
Sbjct: 448 RVAFVEKLTKLVLSQLPNFWKLWISYVNGSLFSETAEKSGQSERSKNVRQRQNDFKKMIQ 507
Query: 114 EGKYSIHSLDEVAGMIRNTISVYEIKVHN--TFNDLE-DSNILRSYMRDAIEEISKACQA 170
E +HSL +IR + ++ + + E + + ++ I+ I ++
Sbjct: 508 E---VMHSL---VKLIRGALLPLSLREGDGRQYGGWEVQAELSGQWLAHVIQTIRLTYES 561
Query: 171 FEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGISK---DETWIPVSILERNK 227
A E + +L+ +Q I + I + +Q + + I + E W+ N+
Sbjct: 562 LTALE----IPNDMLQIIQDLILDLRIRCIMVTLQHTAEEIKRLAEKEDWVV-----DNE 612
Query: 228 SPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFL 287
++ LP F + S+ + ++ EA+ Q + QE V +N
Sbjct: 613 G---LTSLPCQFEQSIVHSLQSLKGVVDCKPGEAS-----VFQQPKTQEEVCQLCINIMQ 664
Query: 288 DFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSV-----VDPHQRLLIV 342
F LE +++ + ++ ++ HL SS D+ GS+ + QRLLIV
Sbjct: 665 VFIYCLEQLST---KPDADIDTTHLSVDVSS-------PDLFGSIHEDFSLTSEQRLLIV 714
Query: 343 ISNIGYCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKAN 402
+SN Y + + ++ Q EK + + + S L++++ E Y KA+
Sbjct: 715 LSNCCYLERHTFLNIAEHFEKHNFQGIEKITQVS-----MASLKELDQRLFENYIELKAD 769
Query: 403 LIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILV 462
I + + W GVR+ E L ++AVHAEVF +K L+ + L +V
Sbjct: 770 PIVGSLEPGIYAGYFDWKDCLPPAGVRNYLKEALVNIIAVHAEVFTISKELVPRVLARVV 829
Query: 463 EGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLK 516
E + + L + S NG Q LE+ + Y T ++R S K
Sbjct: 830 EAVSEELSRLM-----QCVSSFSRNGALQARLEICALRDTVAIYLTSESRSSFK 878
>sp|Q9VQQ9|EXOC2_DROME Exocyst complex component 2 OS=Drosophila melanogaster GN=sec5 PE=2
SV=1
Length = 894
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 101/244 (41%), Gaps = 29/244 (11%)
Query: 233 SYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDFAGH 292
+ LP A +++ ++D++ +S + E LLE Q + R +F
Sbjct: 582 TLLPAALETLLIETLDEV-------QSVCMQRETREGNLLEPQSDGQREVTQRLQEFLSA 634
Query: 293 LEHIASELAQNKSNKES-QHLQNGYSSDPCTESLSDIPGS----VVDPHQRLLIVISNIG 347
+ ELA + ++E+ H + P + + GS V QR+L ++N
Sbjct: 635 FSAVIEELAFHSHDEETPTHNVSQLLGFPNAQQPDSVAGSGGAAAVTWEQRMLCCLANYA 694
Query: 348 YCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVM-----SFSGLEEKVLEQYTFAKAN 402
YC + + + DI+++ G + L + + + L +LE+Y K +
Sbjct: 695 YC----NKIFFPRLGDIFVRY------GYPLPTLAIETARYTVNQLFTNLLEEYVEHKGD 744
Query: 403 -LIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGIL 461
L+ T + L QW + +R A E LV V++E+++ + LL L +
Sbjct: 745 PLVGTIEPSMYLGR-FQWDHEMEIGQLRPYAHECCDNLVGVYSEIYSISPALLRPILESI 803
Query: 462 VEGL 465
V+ +
Sbjct: 804 VQTI 807
>sp|Q5FBW2|KLK1_BLABR Blarinasin-1 (Fragment) OS=Blarina brevicauda GN=KLK1 PE=1 SV=1
Length = 280
Score = 36.2 bits (82), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 565 DLIALAQQYSSELLQAELER-TRINTACFVESLPLDSVPESAKVAYGFRGSMDPSGRNYP 623
D I+L +S +L+ +LE+ ++N A V LP +K GSMDP RN+P
Sbjct: 126 DEISLGADFSHDLMMMQLEKPVQLNDAVQVLDLPTQEPQVGSKCHASGWGSMDPYSRNFP 185
>sp|Q8CPE9|MUTL_STAES DNA mismatch repair protein MutL OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=mutL PE=3 SV=1
Length = 645
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 221 SILERNKSPYTISYLPLAFRSIMKSSMDQI--SLMIHSLRSEATKS-EDMYAQLLEIQES 277
+ILE + TI P+ + +I MD I + +H + E S ED L I
Sbjct: 266 AILEGYHTLLTIGRFPICYINI---QMDPILVDVNVHPTKLEVRLSKEDQLYDL--IVTK 320
Query: 278 VRLSFLNRFLDFAGHLEHIASE------LAQNKSNKESQHLQNGYSSDPCTESLSDIPGS 331
+R +F ++ L L H + + Q K N E Q Q G +S P D
Sbjct: 321 IREAFKDKILIPQNDLNHASKKNKVLETFEQQKINFEKQQSQIGETSAPYVHDQKD-KNH 379
Query: 332 VVDPHQRLLIVISNIGYCKDELSSELYNKYKDIWLQSREK 371
V+ H+ L S+ E+S+EL+N D +LQS+++
Sbjct: 380 DVESHKNNLDSTSSTNNESTEVSNELHNHIDDSYLQSQKE 419
>sp|Q5HPP4|MUTL_STAEQ DNA mismatch repair protein MutL OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=mutL PE=3 SV=1
Length = 645
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 221 SILERNKSPYTISYLPLAFRSIMKSSMDQI--SLMIHSLRSEATKS-EDMYAQLLEIQES 277
+ILE + TI P+ + +I MD I + +H + E S ED L I
Sbjct: 266 AILEGYHTLLTIGRFPICYINI---QMDPILVDVNVHPTKLEVRLSKEDQLYDL--IVTK 320
Query: 278 VRLSFLNRFLDFAGHLEHIASE------LAQNKSNKESQHLQNGYSSDPCTESLSDIPGS 331
+R +F ++ L L H + + Q K N E Q Q G +S P D
Sbjct: 321 IREAFKDKILIPQNDLNHASKKNKVLETFEQQKINFEKQQSQIGETSAPYVHDQKD-KNH 379
Query: 332 VVDPHQRLLIVISNIGYCKDELSSELYNKYKDIWLQSREK 371
V+ H+ L S+ E+S+EL+N D +LQS+++
Sbjct: 380 DVESHKNNLDSTSSTNNESTEVSNELHNHIDDSYLQSQKE 419
>sp|Q5ALX5|SSN2_CANAL Mediator of RNA polymerase II transcription subunit 13 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SSN2 PE=3
SV=1
Length = 1665
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 20/115 (17%)
Query: 227 KSPYTIS----YLPLAFRSIMKSSMDQISLMIHSLRSEA----TKSEDMYAQLLEIQES- 277
+SP IS YLPL RSI S++ LM + + S+ T S+D L+I +S
Sbjct: 832 ESPSKISESSNYLPLILRSINVSTIPSSYLMNNLISSKLLPSFTISDDDLENDLDITKSN 891
Query: 278 ---VRLSFLNRFLDFAGHLEHIASELAQNKSNKESQHLQNG-----YSSDPCTES 324
V+L FL FLDF +I +L K N ES + NG +SDP S
Sbjct: 892 EMIVKLGFLKEFLDFMS--PNIIFDLGLMK-NDESDYYINGVNDLLLNSDPGISS 943
>sp|P29622|KAIN_HUMAN Kallistatin OS=Homo sapiens GN=SERPINA4 PE=1 SV=3
Length = 427
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 101 LNASGNKAEEKVGEGKYSIHSLDEVAGMIRNTISVYEIKV-HNTFND 146
LN G+ E +VG + H+L +A + +T++VYE K+ H F D
Sbjct: 128 LNLPGHGLETRVGSALFLSHNLKFLAKFLNDTMAVYEAKLFHTNFYD 174
>sp|Q8R370|USBP1_MOUSE Usher syndrome type-1C protein-binding protein 1 OS=Mus musculus
GN=Ushbp1 PE=1 SV=2
Length = 680
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 54/293 (18%)
Query: 42 PIDSLPVELSGEEV-DAFRGRY--IRRLTAVLIHHIPAFWKVALSVFSGKFAKSSQVSSE 98
P+DS P E+S V + + R + + A L HH S F KS + + +
Sbjct: 94 PLDSGPAEISVPSVYETLQCRLSSLEAVVAALRHH------------SLSFPKSVE-AED 140
Query: 99 SNLNASGNKAEEK--VGEGKYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSY 156
+ A G +EK G G+ L E +R + E ++ T L+D+ +
Sbjct: 141 RDQGAPGPFGDEKEDAGPGQQEAARLIERNAWLRLALCNREDELACTQASLQDAQAEKET 200
Query: 157 MRDAIEEISKACQAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGISKDET 216
++ ++E+ + EA +PP + + GR S ST G +
Sbjct: 201 LQRQVQELEDSLMQMEA---SPPTPI------------LRAGRRNS--NSSTSGAER-RP 242
Query: 217 WIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQE 276
W+P S + F ++S S S + A ++ M Q+ ++Q
Sbjct: 243 WVPQD-----------SSMAHPFLQRLRSDSSTQSFGCLSTQHPAPETYLMEDQMGQLQG 291
Query: 277 SV-RLSFLNRFL-----DFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTE 323
S+ +L NR L + G E ++ +LA+ ++ + L YS D C E
Sbjct: 292 SIEKLKCFNRLLLAVLQGYKGRCESLSIKLAKREAEATALRLALQYSED-CEE 343
>sp|A8AWG3|LEPA_STRGC Elongation factor 4 OS=Streptococcus gordonii (strain Challis /
ATCC 35105 / CH1 / DL1 / V288) GN=lepA PE=3 SV=1
Length = 607
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 52/307 (16%)
Query: 357 LYNKYKDIWLQSREKD---QEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLL 413
+Y+ Y+ + LQ R D + G IQ +MS +G V E F + R FL
Sbjct: 208 VYDAYRGVILQVRVMDGVVKPGDTIQ--LMS-NGKTFDVTEVGIFTPKAIGRD----FLA 260
Query: 414 DSGVQWGAAPAVKGVRDV------------AVELLHTLVAVHAEVFAGAKPLLDKTLGIL 461
V + AA ++K V+D A E LH ++ VFAG P+ L
Sbjct: 261 TGDVGYIAA-SIKTVQDTRVGDTVTLADNPATEPLHGYKQMNPMVFAGLYPIESNKYNDL 319
Query: 462 VEGLIDTFLSLFDENQSNNLKSLDANGF---CQLM--LELDYFETILNPYFTHDARESLK 516
E L L L D + ++ A GF C + L +D + L F D L
Sbjct: 320 REAL--EKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNID----LI 373
Query: 517 NLQGVLLEKATVSVAEAVE--NPGHHRRPTRGSEDALADERQQGMTVSPDDLIA----LA 570
++ K ++ EA++ NP PT+ D++ + + + P + + LA
Sbjct: 374 MTAPSVIYKVNLTDGEAIDVSNPSEFPDPTK--IDSIEEPYVKAQIMVPQEFVGAVMELA 431
Query: 571 QQYSSELLQAE-LERTRINTACFVESLPLDSVPESAKVAYGFRGSMDPSGRNYPAMDSPS 629
Q+ + + + ++ R+N + +PL A++ + F + S R Y + D
Sbjct: 432 QRKRGDFVTMDYIDDNRVNV---IYQIPL------AEIVFDFFDKLKSSTRGYASFDYEI 482
Query: 630 RNYRNAQ 636
YR+++
Sbjct: 483 SEYRSSK 489
>sp|Q756L3|SP110_ASHGO Spindle pole body component 110 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPC110
PE=3 SV=1
Length = 852
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 174 KESAPPVAVMVLRTLQA-EITKIYIGRLCSWMQGSTDGISKDETWIPVSILERNKSPYTI 232
K + + VLRT + E KI R S ++ D + +E + ER++ I
Sbjct: 498 KRTIRDIEESVLRTTRELETAKIQHRREKSMLEARLDQAASEEPF------ERSRLEKEI 551
Query: 233 SYLPLAFRSIMKSSMDQISL---MIHSLRSEATK--SEDMYAQLLEIQESVR---LSFLN 284
S L L RSI + ++SL SL++ K +D ++ L EI E R S +
Sbjct: 552 SMLKLEIRSIQDTKERELSLWESKYESLKNTYEKLLQQDKHSNLNEILEDRREELKSLMK 611
Query: 285 RFLDFAGHLEHIASELAQNKSNKES 309
++ D + EL + KS+KE+
Sbjct: 612 KYNDLTTENLELTRELNKQKSHKEA 636
>sp|B3Q970|GRPE_RHOPT Protein GrpE OS=Rhodopseudomonas palustris (strain TIE-1) GN=grpE
PE=3 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 7.2, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 387 GLEEKVLEQYTFAKANLIRTAATTFLLDSGVQ--------WGAAPAVKGVRDVAVELLHT 438
G E ++ + A+ ++RT A L Q +G + V D+A L
Sbjct: 36 GSNEALVREAADARDKMLRTLAEMENLRKRTQKEVADARTYGVTSFARDVLDIADNLQRA 95
Query: 439 LVAVHAEVFAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANG------FCQL 492
L AV AE A A+P L L+EG+ T SL + + N +K D G F Q
Sbjct: 96 LDAVPAEARANAEP----GLKALIEGVELTERSLLNALEKNGVKKFDPKGQKFDPNFQQA 151
Query: 493 MLEL 496
M E+
Sbjct: 152 MYEV 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,743,029
Number of Sequences: 539616
Number of extensions: 9351271
Number of successful extensions: 27164
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 27124
Number of HSP's gapped (non-prelim): 53
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)