Query 006355
Match_columns 649
No_of_seqs 126 out of 146
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 22:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2347 Sec5 subunit of exocys 100.0 1.2E-78 2.6E-83 680.2 33.5 517 13-589 406-934 (934)
2 KOG2346 Uncharacterized conser 97.6 0.0025 5.5E-08 71.0 17.4 180 331-531 390-615 (636)
3 PF04091 Sec15: Exocyst comple 97.1 0.003 6.6E-08 67.7 10.2 133 379-522 136-274 (311)
4 PF04437 RINT1_TIP1: RINT-1 / 95.6 0.17 3.7E-06 57.5 13.9 136 379-522 301-442 (494)
5 PF06046 Sec6: Exocyst complex 94.1 3.2 7E-05 47.8 19.2 260 199-507 215-476 (566)
6 KOG2176 Exocyst complex, subun 89.3 1.1 2.4E-05 53.2 8.0 103 393-505 600-703 (800)
7 KOG2033 Low density lipoprotei 84.4 2.8 6.1E-05 49.3 7.6 85 423-511 638-724 (863)
8 PF10474 DUF2451: Protein of u 84.3 21 0.00045 37.2 13.3 128 383-519 49-189 (234)
9 PF14923 CCDC142: Coiled-coil 84.1 25 0.00055 40.0 14.8 129 378-515 222-361 (450)
10 KOG2307 Low density lipoprotei 75.5 90 0.0019 36.6 15.5 173 336-511 476-681 (705)
11 PF07393 Sec10: Exocyst comple 71.5 1E+02 0.0022 37.0 15.8 118 427-573 575-699 (710)
12 PF12022 DUF3510: Domain of un 65.6 23 0.00051 33.2 7.1 57 418-474 23-80 (125)
13 KOG0412 Golgi transport comple 64.9 2.4E+02 0.0051 34.2 16.2 184 338-540 543-748 (773)
14 PF04091 Sec15: Exocyst comple 43.3 42 0.00091 36.3 5.5 69 426-505 39-111 (311)
15 PF12209 SAC3: Leucine permeas 36.6 62 0.0013 28.3 4.5 41 434-474 4-51 (79)
16 KOG1328 Synaptic vesicle prote 31.6 4.6E+02 0.01 32.1 11.6 127 339-476 725-858 (1103)
17 PF05837 CENP-H: Centromere pr 30.9 1E+02 0.0022 28.2 5.2 43 380-424 55-97 (106)
18 PF12162 STAT1_TAZ2bind: STAT1 28.2 48 0.001 22.6 1.8 17 557-573 6-22 (23)
19 KOG3758 Uncharacterized conser 26.3 1.2E+03 0.026 28.1 16.2 104 351-473 366-484 (655)
20 PF15209 IL31: Interleukin 31 22.3 4.5E+02 0.0097 25.5 7.8 47 377-432 14-61 (137)
21 PF09462 Mus7: Mus7/MMS22 fami 22.0 1E+03 0.022 28.2 12.6 125 416-544 457-599 (614)
22 PF11547 E3_UbLigase_EDD: E3 u 21.6 1.1E+02 0.0024 24.6 3.0 30 561-590 7-40 (53)
23 PF02514 CobN-Mg_chel: CobN/Ma 21.0 1.9E+02 0.0041 36.8 6.6 60 562-627 664-724 (1098)
24 KOG2638 UDP-glucose pyrophosph 20.4 1.4E+02 0.0031 34.0 4.7 66 348-432 22-89 (498)
No 1
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-78 Score=680.15 Aligned_cols=517 Identities=44% Similarity=0.632 Sum_probs=452.4
Q ss_pred hchhHHHHHHHhhcccCCccccccCCCCCCCcCCCccCcccchhhHHHHHHHHHHHHHhhcchhHHHHHHHHhcc-eeec
Q 006355 13 MSDARWLQIQQDLNQSSGADYSVTCGNIQPIDSLPVELSGEEVDAFRGRYIRRLTAVLIHHIPAFWKVALSVFSG-KFAK 91 (649)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~fVe~Ls~vl~~~lP~FWkL~~syf~G-~~~~ 91 (649)
++| +|.|.|+++...|+...+..++..+ +.+ +.+-.|-++.+++||+.||+++++|+|+|||+|++||+| +|..
T Consensus 406 ~~~-~~~q~s~~g~~~S~t~s~~~~~~~q-~~~---~~~~~~k~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~ 480 (934)
T KOG2347|consen 406 LSD-KWTQPSQNGVHLSDTASSMENSQNQ-VIN---EWKIREKTPERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSP 480 (934)
T ss_pred ccc-cccchhhcccccCchHHHHhhhhhh-hcc---chhhhhhchHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCc
Confidence 778 9999999998888877555544433 333 888999999999999999999999999999999999999 5555
Q ss_pred cc-ccCcccccccccchhhhh--hccccccccchhHHHHHHHHhhhhhHHhhhccccchhhhhhchHHHHHHHHHHHHHh
Q 006355 92 SS-QVSSESNLNASGNKAEEK--VGEGKYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKAC 168 (649)
Q Consensus 92 ~~-~k~~~~~~~~~~~~~~~~--~~~~~~~s~~l~dfk~mi~~~i~~~~~kv~~~~~~li~a~~L~~yL~~~v~ei~k~~ 168 (649)
.. .+++ ..+|..+. ..++.+..|++...+.|..-+++.++.++...++++--+..+.++|+..++++.++|
T Consensus 481 ~sq~~~s------~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~ 554 (934)
T KOG2347|consen 481 SSQVQDS------DINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKAC 554 (934)
T ss_pred ccccChh------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccccCccchhHHHHhHHHH
Confidence 55 2332 23455555 667889999999999999999999999999888888888888899999999999999
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---cccccccccccccCCCCCccccchHHHHHHHHH
Q 006355 169 QAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGIS---KDETWIPVSILERNKSPYTISYLPLAFRSIMKS 245 (649)
Q Consensus 169 ~~l~~~~~s~~~~l~~LR~L~s~l~~~~V~rLcsw~rdaae~i~---~lEdW~~~~~~er~~s~~~iT~LP~~Fe~~i~~ 245 (649)
+.|..++..| + +.|+.++..+++..++++|+||+.++|.|+ +.|+|.++.+++|+ .++|+||.+||++|++
T Consensus 555 ~sL~ale~~P-~--~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~s~~~rn---~s~t~LP~~fEt~ivs 628 (934)
T KOG2347|consen 555 QSLEALESLP-H--DALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPDSILERN---RSITYLPLAFETVIVS 628 (934)
T ss_pred HHHHHhhhCh-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcc---cchhhhhHHHHHHHhh
Confidence 9999999776 4 667777777888888999999999999999 69999999999987 5699999999999999
Q ss_pred HHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccc-cc---cccCCCCCCC
Q 006355 246 SMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKES-QH---LQNGYSSDPC 321 (649)
Q Consensus 246 ~mq~i~~~l~s~~~E~~~~~dl~~~~~elq~~V~~~f~~~l~sfl~~L~~LA~~~~~~~~d~~s-~~---~~~~~~~~~~ 321 (649)
+|+++..++++.+||++ +|+ +++++..|...+++.+.+|+-|+++||.+..+...|... +. .++++++...
T Consensus 629 sl~q~~~~~l~~~gEa~----~f~-~~~~~~~i~el~I~~~~~fl~c~e~L~~h~~~~~~~~~q~~t~~~~~~~~~~~~q 703 (934)
T KOG2347|consen 629 SLEQVNSVLLSFEGEAA----LFE-QPDMQAEIEELSISVRLAFLNCFEDLAIHLEQIGADLSQLTTQIEGQNGFSNAHQ 703 (934)
T ss_pred hHHhhhhHHhhcccccc----ccC-chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcccccccccccccccc
Confidence 99999999998899987 888 699999999999999999999999999964432222211 11 1345666654
Q ss_pred CCcCCCCCCCCCCcCceeeheecchHHHHHhhHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006355 322 TESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKA 401 (649)
Q Consensus 322 ~~~~~~~~~~~~~~~~RLLltLSNl~ylr~~v~P~L~~~Fe~~f~~~lt~~~~~~~~~tl~~~Ls~Ld~rLFe~Yv~~K~ 401 (649)
..++.++++.+.+||+||||||||++||+...+|+|++.|+.-|...... .+.+...|++|+.+||++|++.|+
T Consensus 704 ed~~~ns~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~~~~~~~k~------iE~is~s~s~l~s~l~e~Yi~~k~ 777 (934)
T KOG2347|consen 704 EDISINSADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKYTWLLSRKN------IEDISMSLSGLGSKLFENYIEDKA 777 (934)
T ss_pred hhhhcccccccCChhheeEEEeccHHHHHHHHHHHHHHHHHHHhhccccc------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555678899999999999999999999999999996655544433 356668999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhhhhcccc-
Q 006355 402 NLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNN- 480 (649)
Q Consensus 402 ~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~- 480 (649)
++|++++|||||+|+|+|+.+|+|+|||||++|+||+||+||||||++||+|+++||..+|++++++|+++|+ |
T Consensus 778 ~~i~~alEp~~~~~~~~W~~~~~~~~irdYa~E~l~~lV~VhaEvf~iap~Ll~kiL~~~ve~i~d~L~~l~~-----~~ 852 (934)
T KOG2347|consen 778 DPIRGALEPYLLDGGIQWGMAPPVKGIRDYAKEALHNLVAVHAEVFAIAPQLLDKILGETVEGISDELLRLFS-----CD 852 (934)
T ss_pred hhhhhcccchhhccccccccCCCccchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh-----hh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCchhhhhhhcCCCC
Q 006355 481 LKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVENPGHHRRPTRGSEDALADERQQGMT 560 (649)
Q Consensus 481 v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (649)
|++||.+|+||+++||+||+++|++|+|++|++.++| |+|...+.+++ ++||+.++...|++++
T Consensus 853 v~s~S~nG~lQi~vdl~~l~~~l~~Ylt~~a~~slkq--------ale~l~~~~~g-----~dtr~lee~ln~~k~s--- 916 (934)
T KOG2347|consen 853 VQSFSANGALQIMVDLEYLEDVLGPYLTKDAKESLKQ--------ALEALSECLSG-----GDTRRLEECLNDDKQS--- 916 (934)
T ss_pred hhccCCCcceeeeeeHHHHHHHHHHhccHHHHHHHHH--------HHHHhhhhccC-----cchhhHHHHHHHhhHH---
Confidence 8999999999999999999999999999999999995 78899999997 5999999999999998
Q ss_pred cChhHHHHHHHHHhHHHHHHHHhhhhhce
Q 006355 561 VSPDDLIALAQQYSSELLQAELERTRINT 589 (649)
Q Consensus 561 ~~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 589 (649)
.+|+.||. +++++||.|+
T Consensus 917 ------m~l~Lqc~-----~a~~~t~~~t 934 (934)
T KOG2347|consen 917 ------MRLQLQCF-----QALEDTRFNT 934 (934)
T ss_pred ------HHHHHHHH-----HHhhhhhcCC
Confidence 68899998 8899999885
No 2
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0025 Score=70.97 Aligned_cols=180 Identities=16% Similarity=0.254 Sum_probs=131.9
Q ss_pred CCCCcCceeeheecchHHHHHhhHHHHHHHHH--------HccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006355 331 SVVDPHQRLLIVISNIGYCKDELSSELYNKYK--------DIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKAN 402 (649)
Q Consensus 331 ~~~~~~~RLLltLSNl~ylr~~v~P~L~~~Fe--------~~f~~~lt~~~~~~~~~tl~~~Ls~Ld~rLFe~Yv~~K~~ 402 (649)
.+.+.|.+|++++--+..+-..++|.+.+.-- +.|..-...+ .-++..++. -++|+..|++...-
T Consensus 390 ~S~~~hegLiv~~~~~~li~~~~~~~~~~~~a~y~l~l~~eqF~~~p~~~-----v~~lc~~~r--a~kLl~hY~~~~gl 462 (636)
T KOG2346|consen 390 SSDKIHEGLIVVLAQLSLIEQKVIPRVTEEIAAYFLGLNSEQFENGPAFI-----VGELCRVFR--AEKLLQHYIDTRGL 462 (636)
T ss_pred cccchhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCCcc-----hHHHHHHHH--HHHHHHHHHhhcch
Confidence 45677999999999888888888888765432 2233222111 133444444 68899999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcchhh-------------------------hH---
Q 006355 403 LIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-------------------------LL--- 454 (649)
Q Consensus 403 ~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap~-------------------------Ll--- 454 (649)
.+.-+++..|. -.+|.....|.+||-||.-.+..|-.|-.||-.+-|+ +-
T Consensus 463 ~vs~~LrK~~~--t~~w~~~~epr~vra~v~r~vee~~~~d~ev~lll~~~rK~k~s~~~~~~~~t~l~t~~~kLf~eri 540 (636)
T KOG2346|consen 463 KVSVLLRKRFK--TPNWVKHKEPREVRAYVDRFVEELEEVDKEVKLLLPQFRKHKRSGSNKMARSTLLETHLAKLFKERI 540 (636)
T ss_pred hHHHHHHHHhc--CCccccccccchHHHHHHHHHHHHHHHhHHHHHhccccccccccCccccchhHHHHHHHHHHHHHHh
Confidence 99999999998 8899999999999999999999999999999554332 11
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHH
Q 006355 455 ----------DKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLE 524 (649)
Q Consensus 455 ----------~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~ 524 (649)
.-|++-+|--..+.|.++.+ +.-|+.-|+-|.-+|..|++..|..+..+++- . .-|++
T Consensus 541 d~f~~veFn~~SvvT~ivK~~LK~l~E~vR------LqTf~rfG~qQvQvDc~fLq~~L~~~V~DE~~--v----~~llD 608 (636)
T KOG2346|consen 541 DIFTKVEFNQESVVTTIVKLCLKSLQEYVR------LQTFNRFGFQQVQVDCQFLQAPLKEAVEDEAA--V----DFLLD 608 (636)
T ss_pred hhhceeeecchhhhHHHHHHHHHHHHHHHH------HHhhcccceeeeehhHHHHHHHHHHHhchHHH--H----HHHHH
Confidence 12344444444555555554 45899999999999999999999999999873 2 23455
Q ss_pred HHHHHHH
Q 006355 525 KATVSVA 531 (649)
Q Consensus 525 ~~~~~~~ 531 (649)
.|.-|.+
T Consensus 609 evi~sA~ 615 (636)
T KOG2346|consen 609 EVIVSAS 615 (636)
T ss_pred HHHHHHH
Confidence 5544443
No 3
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.06 E-value=0.003 Score=67.71 Aligned_cols=133 Identities=14% Similarity=0.238 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcchh-hhHHHH
Q 006355 379 QDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAK-PLLDKT 457 (649)
Q Consensus 379 ~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap-~Ll~rV 457 (649)
+...+.-+.=|.+||+ -+..|.+-+- ++. .+||.+..+|++.++|+.|++..|-.+=+.++..-| .+-..+
T Consensus 136 ~~f~~~r~~Ae~~I~~-lv~~KIDe~l-----ela--~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~ 207 (311)
T PF04091_consen 136 KMFKDARKAAEKRIFE-LVNSKIDEFL-----ELA--EYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLV 207 (311)
T ss_dssp --S---TTHHHHHHHH-HHHHHHHHHH-----TT----TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH-----hhc--ccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3344445556666664 3555655553 222 789999999999999999999999999988877776 577888
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhccc-----CChhHHHHHHHHHHHH
Q 006355 458 LGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPY-----FTHDARESLKNLQGVL 522 (649)
Q Consensus 458 Ls~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~Y-----lT~~A~~~l~~iy~~l 522 (649)
.-.....+++.|+..+- ++.+++++.+|..|.-+|+.++++....- -...-+..+..++|.+
T Consensus 208 ~~~a~~his~~l~~~Ll---~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlv 274 (311)
T PF04091_consen 208 YFSACDHISESLLDLLL---SDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLV 274 (311)
T ss_dssp HHHHHHHHHHHHHHHHT------------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---CCcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHH
Confidence 88889999999999984 23779999999999999999999998877 4444555666655544
No 4
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=95.63 E-value=0.17 Score=57.50 Aligned_cols=136 Identities=12% Similarity=0.140 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-----CccchHHHHHHHHHHHHHHHHhc-chhh
Q 006355 379 QDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAV-----KGVRDVAVELLHTLVAVHAEVFA-GAKP 452 (649)
Q Consensus 379 ~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P-----~~VRpYv~E~L~~LV~VHAEV~s-iap~ 452 (649)
.+....+..|..++.+.++..-...+...+.+++. .-.|...+.+ ..+++-+.+.|..|-..=+-+.+ +++.
T Consensus 301 de~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k--~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~ 378 (494)
T PF04437_consen 301 DETISAYEKLRKRMLESIVDRVVKEFKASLKAYFK--RSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPA 378 (494)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT----GGGT-------------GGGHHHHHHHHHHHHHHHTS--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 56777899999999999999999999999999996 5789887755 68999999988887665554443 6677
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHH
Q 006355 453 LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVL 522 (649)
Q Consensus 453 Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l 522 (649)
...+|-..+++.+...|.+-.= ...+||.+|+.|...|++++-.+++.|.... ...+..+.+.+
T Consensus 379 ~f~~i~r~ia~~l~~~l~~~Il-----~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p-~~~f~~l~E~~ 442 (494)
T PF04437_consen 379 DFRRIWRRIASKLDDYLWESIL-----MSNKFSRAGAAQLQFDMRALFSVFSQYTPRP-EAFFKRLREAC 442 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-----TTS-B-HHHHHHHHHHHHHHHTTS--TTSGG--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hcCeeChhHHHHHHHHHHHHHHHHHhhccCH-HHHHHHHHHHH
Confidence 8888888899999998888555 3369999999999999999999999977654 45666655554
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=94.14 E-value=3.2 Score=47.76 Aligned_cols=260 Identities=13% Similarity=0.183 Sum_probs=140.6
Q ss_pred HHHHHhhhhhcccccccccccccccccCCCCCccccchHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHH
Q 006355 199 RLCSWMQGSTDGISKDETWIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESV 278 (649)
Q Consensus 199 rLcsw~rdaae~i~~lEdW~~~~~~er~~s~~~iT~LP~~Fe~~i~~~mq~i~~~l~s~~~E~~~~~dl~~~~~elq~~V 278 (649)
.+..|+..+.+ .-.++|.-....+.+.+-+=.|.+|--+-.+|.+.++.+.. + ...++...+
T Consensus 215 ~~~eW~~n~l~--~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~---~-------------l~~~v~~~v 276 (566)
T PF06046_consen 215 KMKEWMDNILE--QEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASE---S-------------LQGKVLQRV 276 (566)
T ss_dssp HHHHHHHHHHH--HHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHH---T-------------T-HHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHh---h-------------hhhhHHHHH
Confidence 45667766332 12445766322121111123677787777777766665521 1 145566777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCcccccccccCCCCCCCCCcCCCCCCCCCCcCceeeheecchHHHHHhhHHHHH
Q 006355 279 RLSFLNRFLDFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSELY 358 (649)
Q Consensus 279 ~~~f~~~l~sfl~~L~~LA~~~~~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~RLLltLSNl~ylr~~v~P~L~ 358 (649)
-..+.+++.+|.+.+.+.-.+... +...... .. ........|+-++.||..|++ .+.++.
T Consensus 277 ~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~----~~-----------~~~~~~eyliA~~N~~~~~~~-~~~~l~ 336 (566)
T PF06046_consen 277 LEELANFLKSYQDAWQEFKEEHFK----DRSSVKP----KE-----------NPPGYLEYLIAVANNCLRCRD-YVESLE 336 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----CC-------------S-HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhhcccc----cc-----------cccchHHHHHHHhccHHHHHH-HHHHHH
Confidence 778888888888888777754332 1100000 00 011222444555556666665 566666
Q ss_pred HHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHH
Q 006355 359 NKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHT 438 (649)
Q Consensus 359 ~~Fe~~f~~~lt~~~~~~~~~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~ 438 (649)
..|............ ..+...+.+.|..+-..-...-++.--.-|...+. .++ ...|... +.+..++.+
T Consensus 337 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~-~Lf--t~~W~~~-------~~~~~I~~T 405 (566)
T PF06046_consen 337 QKFEEKVSQKYMERI-SSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFK-KLF--TKKWYSG-------EAVDTICAT 405 (566)
T ss_dssp HHHHTTS-HHHHHHH-HHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHC-TTT--SGGGCTS--------HHHHHHHH
T ss_pred HhcccccchHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhC--cCcCcCc-------chHHHHHHH
Confidence 666554332221100 00112233333333332222222222212222221 222 4567776 788888888
Q ss_pred HHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHhhhhhccccC-CCCCcchhHHHHhhHHHHHHhhcccC
Q 006355 439 LVAVHAEVFA-GAKPLLDKTLGILVEGLIDTFLSLFDENQSNNL-KSLDANGFCQLMLELDYFETILNPYF 507 (649)
Q Consensus 439 LV~VHAEV~s-iap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v-~~fs~~G~lQAtLDIefl~~tL~~Yl 507 (649)
+--...+... +.|++...++..+...+..+.++++.+.+.+|= ..-...+.-|..-|++-+.+.+..|.
T Consensus 406 i~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 406 IEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp HHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888 899999999999999999998888886532221 23467788899999999999999999
No 6
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.30 E-value=1.1 Score=53.18 Aligned_cols=103 Identities=12% Similarity=0.192 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHH
Q 006355 393 LEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAK-PLLDKTLGILVEGLIDTFLS 471 (649)
Q Consensus 393 Fe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap-~Ll~rVLs~Lve~la~eLl~ 471 (649)
...|+..|.+-+-+.+ ..||-....|.|+..|+.|.+.+|-.+-+++..+-| .....+.-..++.++..+..
T Consensus 600 l~~~i~~Kid~f~~l~-------~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~~~his~~iv~ 672 (800)
T KOG2176|consen 600 LIELIKLKIDDFLELI-------EYDWTTTEVPQGPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRELDHISTSIVG 672 (800)
T ss_pred HHHHHhhhhHHHHHHh-------hccccccccCCCccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777665543 568999999999999999999999999999999998 56777777777778888777
Q ss_pred hhhhhccccCCCCCcchhHHHHhhHHHHHHhhcc
Q 006355 472 LFDENQSNNLKSLDANGFCQLMLELDYFETILNP 505 (649)
Q Consensus 472 ~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~ 505 (649)
.+.. ..++.+++++..|.-+|+.+++-.-+.
T Consensus 673 llld---d~ik~is~~Ai~~fnlDv~~lEsfa~~ 703 (800)
T KOG2176|consen 673 LLLD---DSIKQISMGAITNFNLDVNYLESFAAS 703 (800)
T ss_pred HHhC---chHHHHHHHHHHccchhHHHHHHhccC
Confidence 7763 377899999999999999998876555
No 7
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=84.44 E-value=2.8 Score=49.28 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHhhhhh-ccccCCCCCcchhHHHHhhHHHHH
Q 006355 423 PAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGLIDTFLSLFDEN-QSNNLKSLDANGFCQLMLELDYFE 500 (649)
Q Consensus 423 p~P~~VRpYv~E~L~~LV~VHAEV~siap~-Ll~rVLs~Lve~la~eLl~~F~~~-~~~~v~~fs~~G~lQAtLDIefl~ 500 (649)
.-|+..+=|+...|..| |.||-++.+. |=++||...+..+...++-.+... .+.|. +.+-||++|.-+|+.|++
T Consensus 638 rLPsqPslyiqSfL~rl---~qeInrvggh~Lp~~vLQ~f~~sl~~k~~~~YE~l~~a~~~-kasqn~aLQll~DLrfl~ 713 (863)
T KOG2033|consen 638 RLPSQPSLYIQSFLQRL---HQEINRVGGHTLPPKVLQAFIQSLIGKLLCHYEGLAHAECT-KASQNIALQLLFDLRFLE 713 (863)
T ss_pred ecCCCccHHHHHHHHHH---HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhhHHHHHHHHHHHH
Confidence 36888899998877665 7889888877 445566666666666666555433 34577 588999999999999999
Q ss_pred HhhcccCChhH
Q 006355 501 TILNPYFTHDA 511 (649)
Q Consensus 501 ~tL~~YlT~~A 511 (649)
++|..=-++++
T Consensus 714 ~Vl~~~~~eR~ 724 (863)
T KOG2033|consen 714 RVLAISREERT 724 (863)
T ss_pred HHHhcCccccc
Confidence 99998777744
No 8
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=84.30 E-value=21 Score=37.18 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHH------hcchhhhHHH
Q 006355 383 MSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEV------FAGAKPLLDK 456 (649)
Q Consensus 383 ~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV------~siap~Ll~r 456 (649)
+...+|-.-++......-. ++.. +-..|- ...|+-.-.+++=++||..++-.+-.....+ ..+.+.+..-
T Consensus 49 ~~v~dLr~~iy~~~a~~~l-~~~~-i~~~Ia--~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~ 124 (234)
T PF10474_consen 49 SAVPDLREPIYKCVASRLL-DLEQ-ILNSIA--NVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNV 124 (234)
T ss_pred HHHHHHHHHHHHHHHHHHc-CHHH-HHHHHH--HcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4455555555544443322 2222 222232 5689999899999999999999988888777 4456678888
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChh-------HHHHHHHHH
Q 006355 457 TLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHD-------ARESLKNLQ 519 (649)
Q Consensus 457 VLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~-------A~~~l~~iy 519 (649)
+..+++..+.+.|++.|.++ ++-|..|..+--||+..|..-|......+ .....++.|
T Consensus 125 lw~~~i~~~~~~Lveg~s~v-----kKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~YIKAyY 189 (234)
T PF10474_consen 125 LWDRLIFFAFETLVEGYSRV-----KKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENYIKAYY 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHc
Confidence 99999999999999999955 89999999999999999998886655432 335555555
No 9
>PF14923 CCDC142: Coiled-coil protein 142
Probab=84.14 E-value=25 Score=40.02 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC---CCCccchHHHHHHHHHHHHHHHHhc-chhh-
Q 006355 378 IQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAP---AVKGVRDVAVELLHTLVAVHAEVFA-GAKP- 452 (649)
Q Consensus 378 ~~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p---~P~~VRpYv~E~L~~LV~VHAEV~s-iap~- 452 (649)
.+++.+.+..+=...+..|-..=...=..+.+.-|= .+--|.-.. .|...+.||-.++.+++.==-+-.. ..+.
T Consensus 222 i~~~~~~Lq~~s~e~~~~f~~~C~~~s~~~f~~~mP-~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~a 300 (450)
T PF14923_consen 222 IQENIAKLQSLSSECLRLFSQDCRKMSLAIFELCMP-SGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEA 300 (450)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 344455454444444444433322222233333332 345688776 3669999999988887653222222 1111
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcc---cCChhHHHHH
Q 006355 453 ---LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNP---YFTHDARESL 515 (649)
Q Consensus 453 ---Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~---YlT~~A~~~l 515 (649)
.+..+|+.+.|.-.+.++.- . -+||..|++|+..|..++++.|.. -+++++++.+
T Consensus 301 q~~~l~~~l~a~~eAWLdhIl~~---k-----IKFS~~GAlQL~~DF~~Vr~wl~~e~~~Ls~e~rq~L 361 (450)
T PF14923_consen 301 QIPALSQALTAMLEAWLDHILMH---K-----IKFSLQGALQLRQDFGYVRDWLESECSGLSPELRQTL 361 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---c-----ceeeHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHH
Confidence 45566666666666655432 2 479999999999999999998876 5677776555
No 10
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=90 Score=36.62 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=99.9
Q ss_pred CceeeheecchHHHHHhhHHHHHHHHHHcccccccccc---c--ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006355 336 HQRLLIVISNIGYCKDELSSELYNKYKDIWLQSREKDQ---E--GTD-IQDLVMSFSGLEEKVLEQYTFAKANLIRTAAT 409 (649)
Q Consensus 336 ~~RLLltLSNl~ylr~~v~P~L~~~Fe~~f~~~lt~~~---~--~~~-~~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie 409 (649)
-+.|+.+++.-.-+-..++|.+.+.-...+...-+.+. + -++ -.++-..+-+|+.+|.+..+..--..|+..-.
T Consensus 476 rtqlvyv~hdd~~llqevl~elle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~d 555 (705)
T KOG2307|consen 476 RTQLVYVRHDDGNLLQEVLPELLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSD 555 (705)
T ss_pred hhheeeeecccchHHHHHhHHHHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34588888888888889999988776555443331111 0 000 12344566678888888777665555554421
Q ss_pred hhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhc-----chhhhHHHHHHHHH----HHH---------HHHHHH
Q 006355 410 TFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFA-----GAKPLLDKTLGILV----EGL---------IDTFLS 471 (649)
Q Consensus 410 ~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~s-----iap~Ll~rVLs~Lv----e~l---------a~eLl~ 471 (649)
+- --+.|-.-+.|+.-++||..+|=.+-+....-.. +-..++..+.+++. +.+ .++=|+
T Consensus 556 --vp-rlyR~TnKevPtthSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~ 632 (705)
T KOG2307|consen 556 --VP-RLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLS 632 (705)
T ss_pred --cH-HHHHhccCCCCCcchHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0236999999999999999998777665544322 22223333333331 111 223345
Q ss_pred hhhhhccccCCC-CCcc--------hhHHHHhhHHHHHHhhcccCChhH
Q 006355 472 LFDENQSNNLKS-LDAN--------GFCQLMLELDYFETILNPYFTHDA 511 (649)
Q Consensus 472 ~F~~~~~~~v~~-fs~~--------G~lQAtLDIefl~~tL~~YlT~~A 511 (649)
-|++++...-+. -+.. --+|+.+|++++.+-+....-..|
T Consensus 633 Rlkq~~~~~~g~s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~fqa~ 681 (705)
T KOG2307|consen 633 RLKQKTTTDSGSSGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVFQAA 681 (705)
T ss_pred HHHhhccCCCCCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcchHh
Confidence 566552222111 1111 148999999999887776555444
No 11
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=71.46 E-value=1e+02 Score=36.95 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=80.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcc
Q 006355 427 GVRDVAVELLHTLVAVHAEVFA-GAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNP 505 (649)
Q Consensus 427 ~VRpYv~E~L~~LV~VHAEV~s-iap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~ 505 (649)
+.-+.+.++.-.|=.+|..+.. +.+.-+..++.+|-..+-..|++.|++- .||..|.+|++-|+...+.++..
T Consensus 575 ~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk~------~vs~~Gg~~l~~Dl~~Y~~~~~~ 648 (710)
T PF07393_consen 575 QPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKKF------TVSSTGGLQLIKDLNEYQDFIRS 648 (710)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhC------ccCchhHHHHHHHHHHHHHHHHH
Confidence 4667788877777776665533 3355677777777777778888888744 78999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHH------HHHHHHHhhhCCCCCCCCCCCCchhhhhhhcCCCCcChhHHHHHHHHH
Q 006355 506 YFTHDARESLKNLQGVLLEK------ATVSVAEAVENPGHHRRPTRGSEDALADERQQGMTVSPDDLIALAQQY 573 (649)
Q Consensus 506 YlT~~A~~~l~~iy~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (649)
+-.+.....+ +.|-+- -.+.+.+.+.. +.+ +. ++++++....|.+
T Consensus 649 ~~~~~v~~~F----~~L~~l~nl~~v~~~~l~~~~~~----------~~~------~~---~~~~~i~~fi~~R 699 (710)
T PF07393_consen 649 WGIPSVDEKF----EALKELGNLFIVDPENLKELCRE----------GQL------GR---FSPEEIYEFIQRR 699 (710)
T ss_pred cCCchHHHHH----HHHHHHHhheeecHHHHHHHHhh----------ccc------cC---CCHHHHHHHHHHh
Confidence 9666544444 333322 22444444442 111 33 8889888777655
No 12
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=65.56 E-value=23 Score=33.21 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHHHHhhh
Q 006355 418 QWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLSLFD 474 (649)
Q Consensus 418 dW~~~p~P~~VRpYv~E~L~~LV~VHAEV-~siap~Ll~rVLs~Lve~la~eLl~~F~ 474 (649)
.|-.-+.|+..++||-.+|..|-..+.+. ..+++.....++..+++.+++.++..-+
T Consensus 23 R~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~ 80 (125)
T PF12022_consen 23 RMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIAS 80 (125)
T ss_pred hccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999888 4566667777777777777776666555
No 13
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.94 E-value=2.4e+02 Score=34.15 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=101.1
Q ss_pred eeeheecchHHHHHhhHHHHHH----HHHHccccccccccccccHHHHHHHHHHHH--------------HHHHHHHHHH
Q 006355 338 RLLIVISNIGYCKDELSSELYN----KYKDIWLQSREKDQEGTDIQDLVMSFSGLE--------------EKVLEQYTFA 399 (649)
Q Consensus 338 RLLltLSNl~ylr~~v~P~L~~----~Fe~~f~~~lt~~~~~~~~~tl~~~Ls~Ld--------------~rLFe~Yv~~ 399 (649)
-.|+.|.| .++-...+-.|.+ .....|.+..+ .+.+...+++++ +-||...+++
T Consensus 543 ~fl~~LNn-~~ls~eyi~~L~~~le~~~~~vf~~~~d-------~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkp 614 (773)
T KOG0412|consen 543 NFLTALNN-ADLSKEYIHTLKKTLESDCTEVFPQNFD-------RAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKP 614 (773)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhcCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34777777 4444455555544 44455554442 233444444433 2366666666
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcchhhhHH----HHHHHHHHHHHHHHHHhhhh
Q 006355 400 KANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKPLLD----KTLGILVEGLIDTFLSLFDE 475 (649)
Q Consensus 400 K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap~Ll~----rVLs~Lve~la~eLl~~F~~ 475 (649)
+..|.-+..-..=| ...-.+...-+.=-|||...|..+=. -+-..=|.|.+ ..++-+++.++.+|=..+.+
T Consensus 615 Ri~~~id~f~~is~--~ls~edy~~~ea~d~~Vq~fl~~v~~---l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k 689 (773)
T KOG0412|consen 615 RIRPWIDTFVNISY--NLSEEDYAAYEANDPWVQQFLSSVEQ---LLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWK 689 (773)
T ss_pred hHhhhhhhhhhhhc--cccHHHHhhhccCChHHHHHHHHHHH---HHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555222211 11111222223344677755544322 22222232333 33444555555555544443
Q ss_pred hccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 006355 476 NQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVENPGHH 540 (649)
Q Consensus 476 ~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~~~~~~ 540 (649)
. .|+.-|.||+-=|+..|=.-|.+-.+-..++-+.-+-|-+.=-..|+++|+.|.-|-+
T Consensus 690 ~------~FNrlG~lqLDre~r~lis~lt~~t~~~lRdKf~RLtQIatLLnle~~se~le~w~~~ 748 (773)
T KOG0412|consen 690 I------QFNRLGGLQLDRELRALISYLTGVTQWNLRDKFARLTQIATLLNLEKDSEILEYWGPN 748 (773)
T ss_pred h------HHHhhcchHhhHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHcccccchHHHhcCCC
Confidence 3 7999999999999988777666655666666666665555555899999999974443
No 14
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=43.33 E-value=42 Score=36.30 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=47.7
Q ss_pred CccchHHHHHHHHHHHHH---HHHhcchhhhHHHHHHHHHHH-HHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHH
Q 006355 426 KGVRDVAVELLHTLVAVH---AEVFAGAKPLLDKTLGILVEG-LIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFET 501 (649)
Q Consensus 426 ~~VRpYv~E~L~~LV~VH---AEV~siap~Ll~rVLs~Lve~-la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~ 501 (649)
..||.|+..++..+=..+ +|+..+ |.+.+..|+.. ++..|.+..+ +..+..-++|..+.+++|+.
T Consensus 39 ~~ir~fi~~~~~F~~~~~~~~~eid~~----v~ks~d~lL~~~l~~~L~~~i~-------~~~~l~qi~Qi~iNl~~le~ 107 (311)
T PF04091_consen 39 RQIRSFIEKCYKFSDDLYQSSTEIDDI----VRKSLDRLLTRVLNGSLKSKIR-------SSLNLSQIVQIVINLEYLEK 107 (311)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHT--------TS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHhHHHHHH
Confidence 488999999888776664 455554 44444444433 6666666666 33799999999999999988
Q ss_pred hhcc
Q 006355 502 ILNP 505 (649)
Q Consensus 502 tL~~ 505 (649)
++..
T Consensus 108 Ac~~ 111 (311)
T PF04091_consen 108 ACKE 111 (311)
T ss_dssp THHH
T ss_pred HHHH
Confidence 7654
No 15
>PF12209 SAC3: Leucine permease transcriptional regulator helical domain; InterPro: IPR024293 This domain is found in fungal proteins, including the nuclear mRNA export protein SAC3. It has been suggested this domain provides a scaffold within the yeast Sac3:Cdc31:Sus1:Thp1 (TREX-2) complex to integrate interactions between protein complexes to facilitate the coupling of transcription and mRNA export during gene expression [].; PDB: 3FWC_N 3FWB_B.
Probab=36.60 E-value=62 Score=28.30 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=31.4
Q ss_pred HHHHHHH--HHHHHHhcchhhhHHHHHH-----HHHHHHHHHHHHhhh
Q 006355 434 ELLHTLV--AVHAEVFAGAKPLLDKTLG-----ILVEGLIDTFLSLFD 474 (649)
Q Consensus 434 E~L~~LV--~VHAEV~siap~Ll~rVLs-----~Lve~la~eLl~~F~ 474 (649)
++.-.|| .||+|+.++.+.++.+-=. .+++.++++|.+||=
T Consensus 4 qi~~~ii~~vV~~el~~~l~~~l~~~n~~~~R~~iI~sLs~ELy~AFi 51 (79)
T PF12209_consen 4 QIYSQIIQDVVHSELSKILKNLLRRQNARKERKQIIDSLSEELYDAFI 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444444 3899999999988876433 569999999999996
No 16
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.62 E-value=4.6e+02 Score=32.13 Aligned_cols=127 Identities=9% Similarity=0.113 Sum_probs=62.5
Q ss_pred eeheecchHHHHHhhHHHHHHHHHHcccccccccccccc--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhh
Q 006355 339 LLIVISNIGYCKDELSSELYNKYKDIWLQSREKDQEGTD--IQDLVMSFSGLEEKVL---EQYTFAKANLIRTAATTFLL 413 (649)
Q Consensus 339 LLltLSNl~ylr~~v~P~L~~~Fe~~f~~~lt~~~~~~~--~~tl~~~Ls~Ld~rLF---e~Yv~~K~~~L~~~Ie~gi~ 413 (649)
|-+++.||.|+|+.+--.+. .+--|. -..|++- -..+.+.+...|..|- +.-+........+-++..++
T Consensus 725 lCv~iNNvE~VRrsl~~~~k----~~~~p~--~~~~~~~~l~~~~~n~les~~~~~~~e~~ri~~~Lt~~m~~~~~K~vf 798 (1103)
T KOG1328|consen 725 LCVAINNVEQVRRSLNITEK----LHMDPR--SRLNGNHMLKSEIENRLESCESNICSEIDRIVGLLTERMLPQMKKHVF 798 (1103)
T ss_pred HHHHHccHHHHHHHHhHHhh----hccCcc--cccCccccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHH
Confidence 55789999999987643332 221110 0111110 1223333433333321 22233333333444455555
Q ss_pred cCCCCCCCCCCCC--ccchHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 006355 414 DSGVQWGAAPAVK--GVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGILVEGLIDTFLSLFDEN 476 (649)
Q Consensus 414 ~~~~dW~~~p~P~--~VRpYv~E~L~~LV~VHAEV~siap~Ll~rVLs~Lve~la~eLl~~F~~~ 476 (649)
.+-|.+...|. .|.|-..=+=..|-++|+-+..- =..|||+.+.+.+..++.++..++
T Consensus 799 --HlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~---Nf~Rvl~a~w~~vl~~l~~~~g~n 858 (1103)
T KOG1328|consen 799 --HLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHR---NFLRVLSAQWSIVLKLLRECVGEN 858 (1103)
T ss_pred --heecCccccchhhhHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899887553 45554433333444455433221 135677777777777776666544
No 17
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=30.87 E-value=1e+02 Score=28.16 Aligned_cols=43 Identities=19% Similarity=0.445 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q 006355 380 DLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA 424 (649)
Q Consensus 380 tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~ 424 (649)
.....+..++..+= .-+.+...+.+++..=|+++|+||...|.
T Consensus 55 ~~~~~l~~~~~~lk--~~r~~~~v~k~v~q~lI~gSgVdWa~D~~ 97 (106)
T PF05837_consen 55 ELSEKLEKLEKELK--KSRQRWRVMKNVFQALIVGSGVDWAEDPK 97 (106)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCcccCHH
Confidence 35566666666552 34677889999999999999999999864
No 18
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=28.20 E-value=48 Score=22.61 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=10.4
Q ss_pred CCCCcChhHHHHHHHHH
Q 006355 557 QGMTVSPDDLIALAQQY 573 (649)
Q Consensus 557 ~~~~~~~~~~~~~~~~~ 573 (649)
+-|.|||||.-+|.|-+
T Consensus 6 nmmPMSPddy~~l~~~V 22 (23)
T PF12162_consen 6 NMMPMSPDDYDELERMV 22 (23)
T ss_dssp S---S-HHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhh
Confidence 45789999999887754
No 19
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=1.2e+03 Score=28.05 Aligned_cols=104 Identities=18% Similarity=0.113 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHHHccccccccccccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-C
Q 006355 351 DELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLE---EKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAV-K 426 (649)
Q Consensus 351 ~~v~P~L~~~Fe~~f~~~lt~~~~~~~~~tl~~~Ls~Ld---~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P-~ 426 (649)
..-+-+|...|...|+.-+.+ |. .+...++.|+ .+.|-.|++.....+... .+ ++| +
T Consensus 366 lfki~nlL~FY~~~fs~~v~~-----ds-~l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~----~l---------~p~~D 426 (655)
T KOG3758|consen 366 LFKISNLLKFYRVTFSKLVQD-----DS-ALLNTLKELEDISKQRFIGYLEDHVKKLMRK----EL---------SPPSD 426 (655)
T ss_pred ehhHHHHHHHHHHHHHHHhcc-----cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC---------CCccc
Confidence 345667888999998855544 22 3444455554 455555665555544433 22 222 1
Q ss_pred -ccchHHHHHHHHHHHHHH--HHhcch--------hhhHHHHHHHHHHHHHHHHHHhh
Q 006355 427 -GVRDVAVELLHTLVAVHA--EVFAGA--------KPLLDKTLGILVEGLIDTFLSLF 473 (649)
Q Consensus 427 -~VRpYv~E~L~~LV~VHA--EV~sia--------p~Ll~rVLs~Lve~la~eLl~~F 473 (649)
..-|+|-|.|+.++.+-+ +-..++ +.++..+|..|++.........+
T Consensus 427 LlPpp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq~c~~sae~~l 484 (655)
T KOG3758|consen 427 LLPPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQMCQKSAEAHL 484 (655)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566677777665544 222222 34888899999988887764444
No 20
>PF15209 IL31: Interleukin 31
Probab=22.31 E-value=4.5e+02 Score=25.50 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC-ccchHH
Q 006355 377 DIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVK-GVRDVA 432 (649)
Q Consensus 377 ~~~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~-~VRpYv 432 (649)
|.+.+...|..+-.+|+++|-+. |.||-.+.-.|-+|..|. +.-.+|
T Consensus 14 d~kkIi~eLq~~Sk~Lledy~~k---------E~Gvp~~~~~~LPCft~d~~~~~nI 61 (137)
T PF15209_consen 14 DIKKIIEELQALSKKLLEDYKEK---------EKGVPESESYQLPCFTPDAQAPNNI 61 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------hcCCCcccCccCCCCCCCCCCCccc
Confidence 67999999999999999999654 367777777788887554 333333
No 21
>PF09462 Mus7: Mus7/MMS22 family; InterPro: IPR019021 Methyl methanesulphonate-sensitivity protein 22 (MMS22), along with MMS1, is involved in protection against replication-dependent DNA damage. MMS22 may act by restoring active replication forks, repairing unusual DNA structures, and/or preventing aberrant DNA rearrangement at arrested replication forks, including the repair of double-stranded DNA breaks created by the cleavage reaction of topoisomerase II [].
Probab=21.97 E-value=1e+03 Score=28.23 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHH-----HHHHhhhhh--c------cccC
Q 006355 416 GVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAK-PLLDKTLGILVEGLID-----TFLSLFDEN--Q------SNNL 481 (649)
Q Consensus 416 ~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap-~Ll~rVLs~Lve~la~-----eLl~~F~~~--~------~~~v 481 (649)
...|....-..+.|-|.--.|.+|+.-+...|.-.+ .++.-.+..|++.... .+.++.... + -|.+
T Consensus 457 ~~s~~~l~~~~~~rkf~p~Fl~~ll~~d~~~f~~~~~~il~~wl~sLv~~~~~l~~e~~l~~~l~~~~~~~~ll~~lpF~ 536 (614)
T PF09462_consen 457 LFSWPRLRNTTQRRKFLPLFLANLLEHDPDDFSDCKESILELWLLSLVKRSSSLKFEHSLTEALLNVDRRDPLLKNLPFL 536 (614)
T ss_pred ccchhhhcccHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhccccchhhcCCcc
Confidence 456777777778999999999999999988877554 3666666666665555 555544421 0 0111
Q ss_pred ----CCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 006355 482 ----KSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVENPGHHRRPT 544 (649)
Q Consensus 482 ----~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~~~~~~~~~~ 544 (649)
-.++..-..|-++++ +..++++-- ......++=|..+|..++.++-+-...-||++..+
T Consensus 537 ~~~~~~it~~~~~~~rl~l--ls~~lsnmr--~~~~~~~~~y~~~l~~~M~~Mk~~y~~~~~s~~~~ 599 (614)
T PF09462_consen 537 PDADYDITIDPFYNRRLSL--LSSILSNMR--ASRKQLRAEYSELLQSVMRSMKEDYQELGSSSTSE 599 (614)
T ss_pred cccccccccccchhHHHHH--HHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 223444455555553 444444433 55567778899999999999988888766654333
No 22
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=21.64 E-value=1.1e+02 Score=24.63 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=22.7
Q ss_pred cChhHHHHHHHHH----hHHHHHHHHhhhhhcee
Q 006355 561 VSPDDLIALAQQY----SSELLQAELERTRINTA 590 (649)
Q Consensus 561 ~~~~~~~~~~~~~----~~~~l~~~~~~t~~~~~ 590 (649)
.-||||+.=||.+ +.+.+-.||.||-+++.
T Consensus 7 ~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN 40 (53)
T PF11547_consen 7 QVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVN 40 (53)
T ss_dssp GS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HH
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHH
Confidence 4589999999987 45788899999988763
No 23
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=20.98 E-value=1.9e+02 Score=36.82 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHhHHHHHHHHhhhhhceeeccccCCCCCCCchhhhhhcccCC-CCCCCCCCCCCCC
Q 006355 562 SPDDLIALAQQYSSELLQAELERTRINTACFVESLPLDSVPESAKVAYGFRGS-MDPSGRNYPAMDS 627 (649)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~~~~~t~~~~~cf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 627 (649)
....++..|.++..-+.+...|...+= .++-=.-+||.+-+.- .|++ .=|.|||+=++|.
T Consensus 664 ~~~~~~~~~~~~~~~l~~~~~E~~~ll-----~aL~G~yv~pg~~gdp-~r~~~vlPTGrN~y~~Dp 724 (1098)
T PF02514_consen 664 ELRALLEIARDYRPRLRSTTNEIDALL-----RALNGRYVPPGPGGDP-IRNPDVLPTGRNFYSFDP 724 (1098)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHH-----HHhCCcccCCCCCCCc-ccCCccCCCCCcccccCc
Confidence 345677777877777766666665542 2211122333333333 3776 3399999999983
No 24
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=20.43 E-value=1.4e+02 Score=33.98 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=44.4
Q ss_pred HHHHhhHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC--CC
Q 006355 348 YCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAP--AV 425 (649)
Q Consensus 348 ylr~~v~P~L~~~Fe~~f~~~lt~~~~~~~~~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p--~P 425 (649)
-+++...++|.+-+++++...... +.+....-++... .||..|+..++ ..++|+... +|
T Consensus 22 ~~~~~~~s~mk~~l~~l~~~~~~~-----~k~~~~~e~~~F~-~Lf~RyL~~~~-------------~~~~wdkI~~p~~ 82 (498)
T KOG2638|consen 22 VTKDEALSQMKNELDKLLSTSEPE-----DKNHFKTELSGFF-NLFSRYLREKA-------------PTIDWDKIRPPPE 82 (498)
T ss_pred HHHHHHHHHHHHHHHhccccCchh-----hhhcchhhHHHHH-HHHHHHHhccC-------------CccchhhccCCCh
Confidence 356677888888888876655422 2233344455544 59999999876 378899864 55
Q ss_pred CccchHH
Q 006355 426 KGVRDVA 432 (649)
Q Consensus 426 ~~VRpYv 432 (649)
..|.+|=
T Consensus 83 d~vv~y~ 89 (498)
T KOG2638|consen 83 DAVVPYD 89 (498)
T ss_pred hhccccc
Confidence 6888884
Done!