Query 006355
Match_columns 649
No_of_seqs 126 out of 146
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 97.1 0.0027 9.4E-08 67.0 11.4 105 389-505 186-291 (325)
2 2fji_1 Exocyst complex compone 96.5 0.32 1.1E-05 52.1 22.7 83 416-510 211-297 (399)
3 3fhn_A Protein transport prote 94.7 0.49 1.7E-05 54.6 16.0 137 378-522 504-651 (706)
4 3n1e_A Vacuolar protein sortin 88.1 7.8 0.00027 36.1 13.0 81 418-506 42-126 (141)
5 3mmi_A Myosin-4; globular tail 59.1 1.4E+02 0.0048 32.1 14.2 136 378-522 134-275 (386)
6 2f6h_X Myosin-2, type V myosin 53.4 2.4E+02 0.0081 30.3 16.6 138 379-522 141-292 (419)
7 3swh_A MUNC13-1, protein UNC-1 47.2 2.7E+02 0.0091 29.2 14.0 66 271-370 80-145 (341)
8 3hr0_A COG4; conserved oligome 46.0 2.5E+02 0.0085 28.3 14.3 83 452-536 144-226 (263)
9 3fwc_B Nuclear mRNA export pro 22.1 98 0.0034 26.3 4.5 43 432-474 7-53 (85)
10 2a2f_X Exocyst complex compone 19.6 2E+02 0.0069 29.9 7.2 106 426-540 82-207 (325)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=97.05 E-value=0.0027 Score=66.98 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHH
Q 006355 389 EEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAG-AKPLLDKTLGILVEGLID 467 (649)
Q Consensus 389 d~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~si-ap~Ll~rVLs~Lve~la~ 467 (649)
|.+||+.- ..|.+-+- -...+||.+..+|++.++|+.|++..|=.+=+ .++. .+.+...+.-.....+++
T Consensus 186 e~~I~~~v-~~KIDdfl-------~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~ 256 (325)
T 2a2f_X 186 EKQVGLRI-CSKIDEFF-------ELSAYDWLLVEPPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAE 256 (325)
T ss_dssp HHHHHHHH-HHHHHHHH-------TTCCTTCC----CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHH-------HhcccCCCCCCCCCCccHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHH
Confidence 45555543 44544442 22388999999999999999999999888887 5554 445788888888899999
Q ss_pred HHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcc
Q 006355 468 TFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNP 505 (649)
Q Consensus 468 eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~ 505 (649)
.++..+. ++.|++|+.+|..|..+|+.++++....
T Consensus 257 ~l~~~Ll---~~~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 257 KIYSIMY---DEDVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp HHHHHHT---C------CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhc---CcchhhcCHHHHHHHHHHHHHHHHHHHh
Confidence 9998886 3488999999999999999999998844
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.32 Score=52.07 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC---cchhHH
Q 006355 416 GVQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD---ANGFCQ 491 (649)
Q Consensus 416 ~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV-~siap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs---~~G~lQ 491 (649)
...|...+ ++..++.++--.-.+. ..+.|++...++..+...+..+.++++.+. .+|. ..|..|
T Consensus 211 t~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~-----~~~~~~~~~~~~~ 278 (399)
T 2fji_1 211 SKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFE-----HSFKNKNNKFLEA 278 (399)
T ss_dssp SGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGC-----CCCCCGGGHHHHH
T ss_pred CchhcCCc-------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCchhHHHHHH
Confidence 55786533 7778887777777777 778899999999999999888888888742 4566 899999
Q ss_pred HHhhHHHHHHhhcccCChh
Q 006355 492 LMLELDYFETILNPYFTHD 510 (649)
Q Consensus 492 AtLDIefl~~tL~~YlT~~ 510 (649)
..-|++.|...+..|.+..
T Consensus 279 l~~D~~~l~~~f~~~~~~~ 297 (399)
T 2fji_1 279 MKRDFEIFYQLFVKVLDGN 297 (399)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9999999999999999855
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.49 Score=54.62 Aligned_cols=137 Identities=10% Similarity=0.127 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC--------ccchHHHHHHHHHHHHHHHHhc
Q 006355 378 IQDLVMSFSGLEEK-VLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVK--------GVRDVAVELLHTLVAVHAEVFA 448 (649)
Q Consensus 378 ~~tl~~~Ls~Ld~r-LFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~--------~VRpYv~E~L~~LV~VHAEV~s 448 (649)
.......+..+-.+ +.+.++..-...+...+++++. .-.|...+.+. .+++-+.+.|-.|..-=+-+.+
T Consensus 504 FDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k--~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~ 581 (706)
T 3fhn_A 504 FQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFK--ISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDS 581 (706)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHH--CCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999 9999999999999999999998 34898665332 3577788888888877777766
Q ss_pred c--hhhhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHH
Q 006355 449 G--AKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVL 522 (649)
Q Consensus 449 i--ap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l 522 (649)
. ++.+..+|-..++..+...|.+..=.+ .+|+.+|+.|...|++++-.+++.+... +...+..+.+.+
T Consensus 582 ~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~-----nkFS~~Ga~Qf~~D~~~L~~v~~lp~~~-~~~~~~~L~E~l 651 (706)
T 3fhn_A 582 MDIPLAISLKVKNELLNVIVNYFTESILKL-----NKFNQNGLNQFLHDFKSLSSILSLPSHA-TNYKCMSLHELV 651 (706)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTTTT-----SCBCHHHHHHHHHHHHHHHTTSCCCTTC-CCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHHH
Confidence 4 777888888888888888887765534 7999999999999999999999944222 234555555544
No 4
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=88.13 E-value=7.8 Score=36.10 Aligned_cols=81 Identities=6% Similarity=0.049 Sum_probs=66.5
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHH---HH
Q 006355 418 QWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQ---LM 493 (649)
Q Consensus 418 dW~~~p~P~~VRpYv~E~L~~LV~VHAEV~siap~-Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQ---At 493 (649)
+|+..++ .++||+..+.=.++..|--+..+-|+ =+.-|+..+....-+.|-++|.+. ....+|--| .+
T Consensus 42 ~Wd~k~p--vpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~------~i~~~~G~q~g~v~ 113 (141)
T 3n1e_A 42 KYEVKAP--VPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHL------NVINDGGPQNGLVT 113 (141)
T ss_dssp TCCCCSS--SSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCSSSSHHHHHHH
T ss_pred HhccCCC--CCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCCcccchHHH
Confidence 7987432 69999999999999999999998877 688888888888888888899866 344555555 77
Q ss_pred hhHHHHHHhhccc
Q 006355 494 LELDYFETILNPY 506 (649)
Q Consensus 494 LDIefl~~tL~~Y 506 (649)
-|++|+...|+..
T Consensus 114 ~Dv~ff~~~L~~L 126 (141)
T 3n1e_A 114 ADVAFYTGNLQAL 126 (141)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccc
Confidence 8999999988765
No 5
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=59.12 E-value=1.4e+02 Score=32.06 Aligned_cols=136 Identities=9% Similarity=0.004 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchHHHHHHHHHHHHHHHH--hcchh
Q 006355 378 IQDLVMSFSGLEE----KVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEV--FAGAK 451 (649)
Q Consensus 378 ~~tl~~~Ls~Ld~----rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~~~p~P~~VRpYv~E~L~~LV~VHAEV--~siap 451 (649)
....+..|+.|+- +||+..++.-...|..+| ||+..+++. .... +..++.+..++-.|=.+|.-. +.+-|
T Consensus 134 l~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~il-P~~~~~~~~--k~~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~p 209 (386)
T 3mmi_A 134 TLIYLNDLENETLKVFDKIYSTWLVKFMKHASAHI-EIFDMVLNE--KLFK-NSGDEKFAKLFTFLNEFDAVLCKFQVVD 209 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHTCG--GGSS-SCCHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-ccccccccc--cccC-CCCccCHHHHHHHHHHHHHHHHHcCCCH
Confidence 4567788888888 899999998888888877 888654211 1111 234566778888888888766 66889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHH
Q 006355 452 PLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVL 522 (649)
Q Consensus 452 ~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l 522 (649)
.|+.++++++.-.+.-.+++.+-.++ .-.+-.=.+|...-+.-+++=+.. --+.|.+.+..+.|+.
T Consensus 210 ~li~QlfsQLF~fIna~lFN~LLlRr----~~cs~s~G~qIr~NLs~LEeW~~~-~l~~a~~~L~~L~QA~ 275 (386)
T 3mmi_A 210 SMHTKIFNDTLKYLNVMLFNDLITKC----PALNWKYGYEVDRNIERLVSWFEP-RIEDVRPNLIQIIQAV 275 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----CCBCHHHHHHHHHHHHHHHHHHTT-TSSCCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHccC----cccCcchHHHHHhhHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 99999999999999999998876552 234555568999999999999988 4455656677666664
No 6
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=53.42 E-value=2.4e+02 Score=30.26 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--------CCC----CCCCCCccchHHHHHHHHHHHHHHHH
Q 006355 379 QDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGV--------QWG----AAPAVKGVRDVAVELLHTLVAVHAEV 446 (649)
Q Consensus 379 ~tl~~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~--------dW~----~~p~P~~VRpYv~E~L~~LV~VHAEV 446 (649)
...+..|..|-.++|..-++.-...|...|.++|++... +|+ ....+. .+-+..++-.|=.+|.-.
T Consensus 141 ~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~Il~~L~~~~~~L 218 (419)
T 2f6h_X 141 TELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFANTE--EYTMDDILTFFNSIYWCM 218 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC-----------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccccccCCC--ccCHHHHHHHHHHHHHHH
Confidence 445667888888899988877777888888888875421 121 111111 234566666676666654
Q ss_pred --hcchhhhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHH
Q 006355 447 --FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVL 522 (649)
Q Consensus 447 --~siap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l 522 (649)
+.+-|.|+.+++++|.-.+.-.+++.+-.++ .-.+-.=.+|...-+..|++=+...--+.+...+..+.|++
T Consensus 219 ~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~----~~cs~s~G~qIr~nls~Le~W~~~~~l~~a~~~L~~l~Qa~ 292 (419)
T 2f6h_X 219 KSFHIENEVFHAVVTTLLNYVDAICFNELIMKR----NFLSWKRGLQLNYNVTRLEEWCKTHGLTDGTECLQHLIQTA 292 (419)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----SCCCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHTHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC----cccchhhHHHHHhhHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 6688999999999999999999999887662 22333334899999999999998887677777777777665
No 7
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=47.17 E-value=2.7e+02 Score=29.16 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccccccccCCCCCCCCCcCCCCCCCCCCcCceeeheecchHHHH
Q 006355 271 LLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCK 350 (649)
Q Consensus 271 ~~elq~~V~~~f~~~l~sfl~~L~~LA~~~~~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~RLLltLSNl~ylr 350 (649)
...+...+.+.+++++..+++.+.+-...... . .+ ...+-+++.|++|+|
T Consensus 80 ~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~----------------~---------e~-----~~~~Cv~lNNie~lR 129 (341)
T 3swh_A 80 VGHYMRRFAKTISNVLLQYADIVSKDFASYCS----------------K---------EK-----EKVPCILMNNTQQLR 129 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------T---------TS-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------h---------hc-----ccchhhhcccHHHHH
Confidence 45566667777777777778877665532110 0 00 134678899999999
Q ss_pred HhhHHHHHHHHHHccccccc
Q 006355 351 DELSSELYNKYKDIWLQSRE 370 (649)
Q Consensus 351 ~~v~P~L~~~Fe~~f~~~lt 370 (649)
..+ .+.|+..+...+.
T Consensus 130 ~~L----~~l~~~l~~~~l~ 145 (341)
T 3swh_A 130 VQL----EKMFEAMGGKELD 145 (341)
T ss_dssp HHH----HHHHHHTTTTTSC
T ss_pred HHH----HHHHHhcchhhHH
Confidence 653 3455666555553
No 8
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=46.00 E-value=2.5e+02 Score=28.31 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHH
Q 006355 452 PLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVA 531 (649)
Q Consensus 452 ~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~ 531 (649)
.|.+.....|+..+++++.+.+.+.--+ ++|+.-|.+|.-=|+..|-..+..-.+-..++.+.-+-|-..=--+|++.
T Consensus 144 ~Lt~~~y~~Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~~~~lRekF~RL~QI~~lLnle~~e 221 (263)
T 3hr0_A 144 SLSPVIYDSLTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVT 221 (263)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTSCTTHHHHTHHHHHHHHHHTCSSGG
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHh--CCcCchhHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHcCCChH
Confidence 3445555555555555555544433111 68999999999999999999986544555666666655544444667777
Q ss_pred HhhhC
Q 006355 532 EAVEN 536 (649)
Q Consensus 532 ~~~~~ 536 (649)
|+.|-
T Consensus 222 ev~d~ 226 (263)
T 3hr0_A 222 EILDY 226 (263)
T ss_dssp GGGGT
T ss_pred HHHHH
Confidence 77663
No 9
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=22.13 E-value=98 Score=26.29 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHHH--HHHHHHhcchhhhHHHHH--HHHHHHHHHHHHHhhh
Q 006355 432 AVELLHTLV--AVHAEVFAGAKPLLDKTL--GILVEGLIDTFLSLFD 474 (649)
Q Consensus 432 v~E~L~~LV--~VHAEV~siap~Ll~rVL--s~Lve~la~eLl~~F~ 474 (649)
+.++...|| .||+|+.++.|.++.+-- ..+++.++++|.++|=
T Consensus 7 ~~qi~~~ii~~vV~~el~~~l~~~l~~~~~R~~iI~sLs~eLy~AFi 53 (85)
T 3fwc_B 7 TEQIANDLVKEVVNSSVISIVKREFSEANYRKDFIDTMTRELYDAFL 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555 489999998888765332 3578999999999996
No 10
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=19.62 E-value=2e+02 Score=29.88 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=67.2
Q ss_pred CccchHHHHHHHHHHHH---HHHHhcchhhhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHh
Q 006355 426 KGVRDVAVELLHTLVAV---HAEVFAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETI 502 (649)
Q Consensus 426 ~~VRpYv~E~L~~LV~V---HAEV~siap~Ll~rVLs~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~t 502 (649)
..||.|+++++..+-.. |.|+..+...=+++.|.+ .+++.|.+..++ +..+...++|..+.+++|+.+
T Consensus 82 ~~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~---~v~~~L~~~i~~------~~~~l~qi~Qi~iNl~~le~a 152 (325)
T 2a2f_X 82 HQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTR---SFSGCLSVVFRQ------PSITLTQLIQIIIDTQYLEKA 152 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTC------TTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHhc------cCCcHHHHHHHHHHHHHHHHH
Confidence 47899999998888876 466665544444444433 245666666651 145688999999999999998
Q ss_pred hccc---CChhH--------------HHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 006355 503 LNPY---FTHDA--------------RESLKNLQGVLLEKATVSVAEAVENPGHH 540 (649)
Q Consensus 503 L~~Y---lT~~A--------------~~~l~~iy~~l~~~~~~~~~~~~~~~~~~ 540 (649)
+..+ ++... ++..+..++.|.+.+..-|.|-++..+=.
T Consensus 153 c~~le~~l~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl~la~yD 207 (325)
T 2a2f_X 153 GPFLDEFVCHMTNTERSVSQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYD 207 (325)
T ss_dssp HHHHHHHHHHHHTCCC-------CCSCCCTTHHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7655 11110 02233445666666667777777665433
Done!