Query 006355
Match_columns 649
No_of_seqs 126 out of 146
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 22:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006355.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006355hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gfna1 a.4.1.9 (A:4-80) Proba 33.0 33 0.0024 25.6 5.4 69 463-538 9-77 (77)
2 d1t56a1 a.4.1.9 (A:22-94) Ethr 19.2 83 0.006 22.7 5.3 68 463-537 6-73 (73)
3 d1v7ba1 a.4.1.9 (A:1-74) Trans 14.9 1.3E+02 0.0092 21.8 5.4 68 463-537 7-74 (74)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 13.9 50 0.0036 23.7 2.5 36 383-420 13-48 (50)
5 d1cqxa1 a.1.1.2 (A:1-150) Flav 13.4 1.4E+02 0.01 24.5 6.0 51 486-538 95-149 (150)
6 d1t33a2 a.121.1.1 (A:89-220) P 13.3 3.3E+02 0.024 22.3 8.5 23 390-412 46-68 (132)
7 d2gdma_ a.1.1.2 (A:) Leghemogl 12.6 1.2E+02 0.009 24.6 5.3 37 496-532 115-151 (153)
8 d1zk8a1 a.4.1.9 (A:6-77) Trans 10.9 2.4E+02 0.018 20.0 5.9 66 463-535 6-71 (72)
9 d1rkta1 a.4.1.9 (A:2-82) Hypot 10.7 2.9E+02 0.021 20.0 7.6 69 460-535 11-79 (81)
10 d3d1kb1 a.1.1.2 (B:1-146) Hemo 10.1 1.2E+02 0.0086 25.0 4.2 29 496-524 111-139 (146)
No 1
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=33.02 E-value=33 Score=25.55 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 006355 463 EGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVENPG 538 (649)
Q Consensus 463 e~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~~~~ 538 (649)
+.+.+..+++|.+. .+..+|..-..+.. -.=..++-.|+.++. +.+..++....+...+.+.++++.||
T Consensus 9 ~~Il~aa~~l~~~~---G~~~~s~~~Ia~~a---gvs~~~lY~~F~~K~-~L~~~~~~~~~~~~~~~~~~~~~~~G 77 (77)
T d2gfna1 9 RALADAVLALIARE---GISAVTTRAVAEES---GWSTGVLNHYFGSRH-ELLLAALRRAGDIQGDRYRTILDEEG 77 (77)
T ss_dssp HHHHHHHHHHHHHH---CGGGCCHHHHHHHH---SSCHHHHHHHTSSHH-HHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHh---CccccCHHHHHHHH---CCCHHHHHHHCcCHH-HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45666667777766 66667766654432 334556677777665 68888888888999999999999887
No 2
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.19 E-value=83 Score=22.73 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 006355 463 EGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVENP 537 (649)
Q Consensus 463 e~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~~~ 537 (649)
+.|.+...++|.+. .+..+++....+.. -.=..++-.|+.++. +.+..+....++...+.+..+.++|
T Consensus 6 ~~Il~aa~~l~~~~---G~~~~t~~~Ia~~a---gvs~~t~Y~~F~~K~-~L~~~~~~~~~~~~~~~~~~~~~~P 73 (73)
T d1t56a1 6 LAILATAENLLEDR---PLADISVDDLAKGA---GISRPTFYFYFPSKE-AVLLTLLDRVVNQADMALQTLAENP 73 (73)
T ss_dssp HHHHHHHHHHHHHS---CGGGCCHHHHHHHH---TCCHHHHHHHCSSHH-HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHh---CcccCCHHHHHHHh---CCCHHHHHHHCcCHH-HHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34566666777765 66667766554432 333556667777665 5777888888888888888888876
No 3
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=14.85 E-value=1.3e+02 Score=21.79 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 006355 463 EGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVENP 537 (649)
Q Consensus 463 e~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~~~ 537 (649)
+.|.+...++|.+. ....+|.....++. ..=..++-.|+.++. +.+.++....++...+.+.++...|
T Consensus 7 ~~Il~aa~~l~~~~---G~~~~s~~~Ia~~a---gvs~~t~Y~~F~~K~-~L~~~~~~~~~~~~~~~l~~~~~dP 74 (74)
T d1v7ba1 7 EMILRTAIDYIGEY---SLETLSYDSLAEAT---GLSKSGLIYHFPSRH-ALLLGMHELLADDWDKELRDITRDP 74 (74)
T ss_dssp HHHHHHHHHHHHHS---CSTTCCHHHHHHHH---CSCHHHHHHHCSSHH-HHHHHHHHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHHHHh---CccccCHHHHHHHh---CcCcchHhhhCCCHH-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45667777888866 77788887766654 344566777777764 4777777777777777777765543
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.93 E-value=50 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 006355 383 MSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWG 420 (649)
Q Consensus 383 ~~Ls~Ld~rLFe~Yv~~K~~~L~~~Ie~gi~~~~~dW~ 420 (649)
+.|.++|+.+-+..-.-+++.|+++|+..+. ...|.
T Consensus 13 ~Ll~~lD~~v~~~gy~nRSEaIRdliR~~l~--~~~w~ 48 (50)
T d2bj7a1 13 KLLEKFDQIIEEIGYENRSEAIRDLIRDFII--RHEWE 48 (50)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--HTTSC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--HHHhh
Confidence 4577888877777666889999999999998 66775
No 5
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=13.37 E-value=1.4e+02 Score=24.50 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=35.8
Q ss_pred cchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHH----HHHHHHhhhCCC
Q 006355 486 ANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKA----TVSVAEAVENPG 538 (649)
Q Consensus 486 ~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~----~~~~~~~~~~~~ 538 (649)
-.-+.++.+ ++|++.|+.-.|++..+.+..+|+.+.+.- .+--.|+-+.||
T Consensus 95 f~~~~~~ll--~~l~~~lg~~~t~e~~~AW~~~~~~i~~~li~~e~~~~~~~~~~~~ 149 (150)
T d1cqxa1 95 YPIVGEHLL--AAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESELYERSAEQPG 149 (150)
T ss_dssp HHHHHHHHH--HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHH--HHHHHHccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 344555554 468889988889999999999988886643 333455666666
No 6
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=13.28 E-value=3.3e+02 Score=22.27 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 006355 390 EKVLEQYTFAKANLIRTAATTFL 412 (649)
Q Consensus 390 ~rLFe~Yv~~K~~~L~~~Ie~gi 412 (649)
..|++.+++|+...++++|..-+
T Consensus 46 ~~l~~~~i~P~~~~l~~ll~~~~ 68 (132)
T d1t33a2 46 QLVHEQVIDPLHTHLTRLVAAYT 68 (132)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 35899999999999999999887
No 7
>d2gdma_ a.1.1.2 (A:) Leghemoglobin {Yellow lupin (Lupinus luteus) [TaxId: 3873]}
Probab=12.56 E-value=1.2e+02 Score=24.64 Aligned_cols=37 Identities=5% Similarity=0.083 Sum_probs=29.3
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006355 496 LDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAE 532 (649)
Q Consensus 496 Iefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~ 532 (649)
+++|++.|+.-.|+++.+.+..+|+.+..--.+.+.|
T Consensus 115 ~~~i~~~lg~~~~~e~~~AW~~~~~~i~~~~~~~~~~ 151 (153)
T d2gdma_ 115 LKTIKEVVGAKWSEELNSAWTIAYDELAIVIKKEMDD 151 (153)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3569999999899999999999999987655544433
No 8
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=10.86 E-value=2.4e+02 Score=19.97 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006355 463 EGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVE 535 (649)
Q Consensus 463 e~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~ 535 (649)
+.+.+...++|.+. .+..++..-..+.. .+ =..++-.|+..+. +.+..+....+++..+.+.++.+
T Consensus 6 e~Il~aa~~l~~~~---G~~~~t~~~Ia~~a-gv--s~~slY~yF~~k~-~L~~~~~~~~~~~~~~~l~~a~~ 71 (72)
T d1zk8a1 6 QKIVETAAEIADAN---GVQEVTLASLAQTL-GV--RSPSLYNHVKGLQ-DVRKNLGIYGIKKLHNRLEEAAE 71 (72)
T ss_dssp HHHHHHHHHHHHHH---CGGGCCHHHHHHHH-TS--CHHHHTTTCSSHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---CCCcccHHHHHHHh-CC--CHHHHHHHCcCHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 56667777788876 67777777766654 32 3667777777655 67777777777777777777765
No 9
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=10.67 E-value=2.9e+02 Score=19.99 Aligned_cols=69 Identities=9% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006355 460 ILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVE 535 (649)
Q Consensus 460 ~Lve~la~eLl~~F~~~~~~~v~~fs~~G~lQAtLDIefl~~tL~~YlT~~A~~~l~~iy~~l~~~~~~~~~~~~~ 535 (649)
..-+.|.+...++|.+. .+..+++..+.+.. ..=..++-.|+..+. +.+..+....++...+.+.+++|
T Consensus 11 ~~r~~Il~aa~~l~~~~---G~~~~ti~~Ia~~a---gvs~~t~Y~~F~~K~-~L~~~~~~~~~~~~~~~l~~~~e 79 (81)
T d1rkta1 11 KRQAEILEAAKTVFKRK---GFELTTMKDVVEES---GFSRGGVYLYFSSTE-EMFRRIIETGLDEGLRKLDKSAE 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---CSTTCCHHHHHHHH---TSCHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh---CcccCCHHHHHHHh---CcCHHHHHHHCcCHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33566777788888877 77888888776654 445677778887765 57777777777777888877776
No 10
>d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=10.08 E-value=1.2e+02 Score=25.04 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHHH
Q 006355 496 LDYFETILNPYFTHDARESLKNLQGVLLE 524 (649)
Q Consensus 496 Iefl~~tL~~YlT~~A~~~l~~iy~~l~~ 524 (649)
+++|++.|+.-.|+++++.+..+|+.+.+
T Consensus 111 l~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T d3d1kb1 111 TIVLAAKMGHAFTAETQGAFQKFLAAVVS 139 (146)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999988854
Done!