Query 006356
Match_columns 648
No_of_seqs 173 out of 284
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 22:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.6E-91 5.5E-96 701.6 22.0 229 149-378 1-229 (229)
2 PF01852 START: START domain; 99.8 5.2E-18 1.1E-22 165.2 14.4 202 154-378 1-205 (206)
3 smart00234 START in StAR and p 99.7 9.9E-17 2.1E-21 156.7 18.9 201 155-379 2-206 (206)
4 cd00177 START Lipid-binding ST 99.3 4E-11 8.7E-16 114.0 15.5 186 158-375 2-190 (193)
5 cd08871 START_STARD10-like Lip 99.1 2.6E-09 5.6E-14 107.2 18.7 201 157-390 9-213 (222)
6 cd08867 START_STARD4_5_6-like 99.1 7.3E-09 1.6E-13 102.8 17.3 193 153-377 4-205 (206)
7 cd08868 START_STARD1_3_like Ch 99.0 8.7E-09 1.9E-13 102.4 17.3 194 152-380 6-208 (208)
8 cd08904 START_STARD6-like Lipi 98.8 6.3E-08 1.4E-12 97.3 14.8 171 153-348 4-178 (204)
9 cd08909 START_STARD13-like C-t 98.7 3.8E-07 8.3E-12 91.9 14.6 128 205-347 48-177 (205)
10 cd08903 START_STARD5-like Lipi 98.7 7.6E-07 1.7E-11 89.3 16.4 192 153-377 4-205 (208)
11 cd08869 START_RhoGAP C-termina 98.6 4.2E-07 9.1E-12 90.3 13.5 168 157-353 4-174 (197)
12 PLN00188 enhanced disease resi 98.6 7E-07 1.5E-11 102.8 14.7 129 209-350 227-365 (719)
13 cd08905 START_STARD1-like Chol 98.5 1.2E-06 2.6E-11 87.9 13.7 193 151-378 5-207 (209)
14 cd08902 START_STARD4-like Lipi 98.4 5.4E-06 1.2E-10 83.4 14.6 191 153-376 4-200 (202)
15 cd08906 START_STARD3-like Chol 98.4 7.7E-06 1.7E-10 82.3 15.8 195 151-377 5-206 (209)
16 cd08910 START_STARD2-like Lipi 98.2 1.9E-05 4.1E-10 79.3 13.7 151 209-379 49-206 (207)
17 cd08877 START_2 Uncharacterize 98.1 5.2E-05 1.1E-09 75.9 14.9 199 153-378 4-213 (215)
18 cd08908 START_STARD12-like C-t 98.1 5.1E-05 1.1E-09 76.6 13.9 161 157-346 12-175 (204)
19 cd08876 START_1 Uncharacterize 98.1 8.6E-05 1.9E-09 72.4 14.4 152 210-377 42-194 (195)
20 cd08874 START_STARD9-like C-te 98.0 8E-05 1.7E-09 75.1 12.6 130 203-351 44-181 (205)
21 cd08907 START_STARD8-like C-te 97.8 0.00013 2.9E-09 73.6 10.0 165 156-348 11-178 (205)
22 cd08870 START_STARD2_7-like Li 97.8 0.00081 1.8E-08 67.4 15.4 153 209-379 50-208 (209)
23 cd08872 START_STARD11-like Cer 97.7 0.0017 3.7E-08 66.8 16.3 195 157-377 9-224 (235)
24 cd08911 START_STARD7-like Lipi 97.6 0.0014 3.1E-08 65.7 14.1 152 210-379 46-206 (207)
25 cd08871 START_STARD10-like Lip 97.3 0.017 3.6E-07 58.3 17.5 175 423-645 21-201 (222)
26 cd08873 START_STARD14_15-like 97.2 0.0035 7.6E-08 64.8 12.2 123 205-344 78-203 (235)
27 cd08913 START_STARD14-like Lip 96.8 0.021 4.5E-07 59.3 13.0 121 212-344 84-208 (240)
28 cd08869 START_RhoGAP C-termina 96.7 0.11 2.4E-06 51.9 17.6 174 423-646 17-196 (197)
29 cd08914 START_STARD15-like Lip 96.6 0.018 4E-07 59.6 11.4 129 210-353 79-211 (236)
30 cd08907 START_STARD8-like C-te 96.4 0.3 6.5E-06 49.8 18.1 174 422-645 24-203 (205)
31 cd08904 START_STARD6-like Lipi 96.3 0.24 5.3E-06 50.2 17.1 175 424-644 21-203 (204)
32 cd08874 START_STARD9-like C-te 95.6 0.1 2.2E-06 53.0 10.5 130 422-575 19-157 (205)
33 cd08876 START_1 Uncharacterize 95.4 1.3 2.8E-05 43.3 17.3 59 422-489 14-72 (195)
34 cd08868 START_STARD1_3_like Ch 95.3 1.1 2.3E-05 44.9 16.9 132 424-576 23-161 (208)
35 PF06005 DUF904: Protein of un 95.1 0.052 1.1E-06 46.7 5.6 47 9-76 19-69 (72)
36 cd08877 START_2 Uncharacterize 95.0 1.6 3.4E-05 43.9 16.9 117 411-544 10-129 (215)
37 cd08867 START_STARD4_5_6-like 94.5 5.1 0.00011 40.0 19.2 145 405-575 8-160 (206)
38 cd08906 START_STARD3-like Chol 94.5 3 6.5E-05 42.3 17.6 130 424-574 24-160 (209)
39 smart00234 START in StAR and p 94.5 0.85 1.8E-05 44.7 13.4 135 424-576 18-158 (206)
40 cd00177 START Lipid-binding ST 94.2 0.97 2.1E-05 43.0 12.8 131 425-575 15-149 (193)
41 cd08903 START_STARD5-like Lipi 94.2 1.7 3.7E-05 43.8 15.1 178 423-645 20-206 (208)
42 TIGR00219 mreC rod shape-deter 94.2 0.063 1.4E-06 56.9 5.0 41 11-68 69-109 (283)
43 cd08911 START_STARD7-like Lipi 93.9 1.9 4.1E-05 43.4 14.9 180 423-645 19-205 (207)
44 cd08870 START_STARD2_7-like Li 93.4 0.91 2E-05 45.6 11.5 106 425-544 22-133 (209)
45 cd08873 START_STARD14_15-like 93.4 0.83 1.8E-05 47.5 11.4 67 422-501 52-118 (235)
46 cd08914 START_STARD15-like Lip 93.3 0.66 1.4E-05 48.3 10.4 57 422-489 53-109 (236)
47 cd08908 START_STARD12-like C-t 93.0 4.9 0.00011 41.0 16.0 165 426-645 28-202 (204)
48 PF07407 Seadorna_VP6: Seadorn 92.2 0.16 3.5E-06 54.6 4.5 24 8-31 32-55 (420)
49 PRK13922 rod shape-determining 91.8 0.27 5.9E-06 51.3 5.5 41 9-67 70-110 (276)
50 cd08860 TcmN_ARO-CYC_like N-te 91.2 4.8 0.0001 38.4 12.8 141 212-379 4-144 (146)
51 PF01852 START: START domain; 91.1 7.3 0.00016 38.0 14.5 150 407-575 2-157 (206)
52 cd08909 START_STARD13-like C-t 90.6 13 0.00029 37.9 16.1 172 425-645 27-203 (205)
53 cd05018 CoxG Carbon monoxide d 90.3 4 8.7E-05 36.8 11.1 119 214-358 6-124 (144)
54 cd08866 SRPBCC_11 Ligand-bindi 90.2 5.3 0.00011 36.5 11.8 133 212-378 2-143 (144)
55 cd08864 SRPBCC_DUF3074 DUF3074 89.9 2.3 5.1E-05 43.3 10.0 102 245-352 77-184 (208)
56 PRK15422 septal ring assembly 88.7 0.99 2.2E-05 39.6 5.4 61 2-76 12-76 (79)
57 cd07813 COQ10p_like Coenzyme Q 88.5 4.4 9.6E-05 37.0 10.0 135 213-379 3-137 (138)
58 KOG2761 START domain-containin 88.0 3.8 8.3E-05 42.3 10.0 112 218-342 63-183 (219)
59 PRK14872 rod shape-determining 87.3 0.68 1.5E-05 50.6 4.4 38 12-67 61-98 (337)
60 cd08910 START_STARD2-like Lipi 87.2 0.91 2E-05 45.8 5.0 93 422-531 22-116 (207)
61 cd08875 START_ArGLABRA2_like C 87.0 6.4 0.00014 41.0 11.0 187 404-621 4-204 (229)
62 cd08905 START_STARD1-like Chol 85.6 35 0.00075 34.5 15.4 76 404-490 6-82 (209)
63 cd07819 SRPBCC_2 Ligand-bindin 84.5 18 0.0004 32.3 11.7 107 213-347 6-114 (140)
64 cd08861 OtcD1_ARO-CYC_like N-t 84.2 11 0.00023 34.4 10.1 27 214-240 4-30 (142)
65 cd08913 START_STARD14-like Lip 84.0 1.7 3.7E-05 45.3 5.3 57 422-489 56-112 (240)
66 PRK10724 hypothetical protein; 82.3 31 0.00066 33.6 12.9 137 212-380 18-154 (158)
67 COG1792 MreC Cell shape-determ 81.5 2.5 5.4E-05 45.1 5.5 44 7-68 65-108 (284)
68 cd07817 SRPBCC_8 Ligand-bindin 81.4 36 0.00078 30.4 12.3 134 214-378 5-138 (139)
69 cd08902 START_STARD4-like Lipi 81.2 2.9 6.3E-05 42.8 5.5 59 423-490 21-79 (202)
70 PF12711 Kinesin-relat_1: Kine 80.7 4.6 9.9E-05 36.1 5.9 47 12-73 21-67 (86)
71 cd07821 PYR_PYL_RCAR_like Pyra 78.0 30 0.00064 30.7 10.6 133 215-377 7-139 (140)
72 TIGR03752 conj_TIGR03752 integ 77.3 2.2 4.7E-05 48.5 3.6 23 51-73 110-132 (472)
73 COG4026 Uncharacterized protei 75.1 5.5 0.00012 41.4 5.5 46 5-71 146-191 (290)
74 cd08872 START_STARD11-like Cer 74.8 9.3 0.0002 39.6 7.2 98 420-531 21-121 (235)
75 PF07407 Seadorna_VP6: Seadorn 74.7 2.6 5.6E-05 45.8 3.1 27 6-32 37-63 (420)
76 cd08865 SRPBCC_10 Ligand-bindi 74.7 60 0.0013 28.6 12.2 136 214-378 4-139 (140)
77 PF12808 Mto2_bdg: Micro-tubul 73.5 3.2 7E-05 33.8 2.7 23 9-31 23-45 (52)
78 cd07818 SRPBCC_1 Ligand-bindin 71.8 43 0.00093 30.7 10.2 29 213-241 6-34 (150)
79 COG3074 Uncharacterized protei 71.5 9.9 0.00021 32.9 5.2 59 4-76 14-76 (79)
80 PRK09413 IS2 repressor TnpA; R 70.8 7 0.00015 36.2 4.7 28 5-32 75-102 (121)
81 PF10604 Polyketide_cyc2: Poly 70.5 77 0.0017 28.0 14.8 35 214-252 7-41 (139)
82 PF06005 DUF904: Protein of un 70.0 4.3 9.2E-05 35.1 2.8 23 6-28 30-52 (72)
83 cd07822 SRPBCC_4 Ligand-bindin 69.1 47 0.001 29.4 9.6 51 325-378 91-141 (141)
84 PF02183 HALZ: Homeobox associ 69.0 7.3 0.00016 30.7 3.7 24 8-31 19-42 (45)
85 TIGR00219 mreC rod shape-deter 67.8 5.6 0.00012 42.3 3.9 18 5-22 70-87 (283)
86 PLN00188 enhanced disease resi 67.2 27 0.00059 41.9 9.5 157 422-614 195-361 (719)
87 PF14197 Cep57_CLD_2: Centroso 64.9 2.8 6E-05 35.9 0.7 20 50-69 47-66 (69)
88 PRK13922 rod shape-determining 62.1 8.5 0.00018 40.3 3.9 27 5-31 73-99 (276)
89 PF14775 NYD-SP28_assoc: Sperm 61.0 10 0.00023 31.6 3.4 25 9-33 34-58 (60)
90 PRK06266 transcription initiat 60.5 8.8 0.00019 38.3 3.4 32 35-66 138-169 (178)
91 cd07824 SRPBCC_6 Ligand-bindin 56.1 1.7E+02 0.0037 27.1 11.4 117 216-358 8-127 (146)
92 TIGR02449 conserved hypothetic 55.7 17 0.00037 31.0 3.8 23 7-29 20-42 (65)
93 smart00340 HALZ homeobox assoc 53.3 12 0.00027 29.3 2.4 20 53-72 15-34 (44)
94 PF07334 IFP_35_N: Interferon- 52.3 12 0.00026 32.9 2.4 21 53-73 3-23 (76)
95 PF08961 DUF1875: Domain of un 51.2 5 0.00011 41.5 0.0 20 10-29 131-150 (243)
96 PRK14872 rod shape-determining 50.4 16 0.00034 40.2 3.6 28 4-31 60-87 (337)
97 PRK10884 SH3 domain-containing 49.7 32 0.00068 35.3 5.5 17 55-71 137-153 (206)
98 TIGR02894 DNA_bind_RsfA transc 48.6 48 0.001 33.0 6.3 47 6-73 102-148 (161)
99 PF06156 DUF972: Protein of un 47.1 32 0.0007 31.8 4.6 21 51-71 37-57 (107)
100 KOG3119 Basic region leucine z 47.1 11 0.00024 39.9 1.8 56 9-71 188-243 (269)
101 PF02183 HALZ: Homeobox associ 47.0 29 0.00063 27.4 3.7 22 4-26 2-23 (45)
102 PRK13169 DNA replication intia 46.9 33 0.00071 32.1 4.6 22 50-71 36-57 (110)
103 cd07823 SRPBCC_5 Ligand-bindin 46.9 10 0.00022 35.3 1.3 26 462-487 3-28 (146)
104 PF10224 DUF2205: Predicted co 46.5 16 0.00034 32.3 2.3 21 13-33 42-62 (80)
105 KOG4196 bZIP transcription fac 46.4 23 0.00051 34.0 3.6 20 52-71 90-109 (135)
106 PRK00888 ftsB cell division pr 45.6 23 0.00049 32.6 3.3 13 57-69 48-60 (105)
107 KOG4196 bZIP transcription fac 45.6 52 0.0011 31.7 5.7 20 9-28 82-101 (135)
108 KOG3119 Basic region leucine z 45.2 41 0.00089 35.7 5.7 60 5-78 198-257 (269)
109 cd07823 SRPBCC_5 Ligand-bindin 43.9 2.7E+02 0.0057 25.8 10.9 29 213-241 3-31 (146)
110 PF04880 NUDE_C: NUDE protein, 42.4 11 0.00025 37.4 1.0 19 51-69 25-43 (166)
111 cd07812 SRPBCC START/RHO_alpha 42.4 2.1E+02 0.0045 24.1 10.4 35 214-252 4-38 (141)
112 cd07819 SRPBCC_2 Ligand-bindin 42.2 20 0.00044 32.0 2.5 29 460-488 4-32 (140)
113 cd08865 SRPBCC_10 Ligand-bindi 42.1 17 0.00036 32.2 1.9 28 461-488 2-29 (140)
114 PF14197 Cep57_CLD_2: Centroso 42.1 27 0.00059 29.9 3.1 20 9-28 48-67 (69)
115 KOG3156 Uncharacterized membra 41.7 29 0.00062 36.0 3.7 24 6-29 114-137 (220)
116 PF10604 Polyketide_cyc2: Poly 41.7 26 0.00057 31.1 3.1 29 460-488 4-32 (139)
117 PF06906 DUF1272: Protein of u 41.3 15 0.00032 30.6 1.3 16 29-44 37-52 (57)
118 PF15058 Speriolin_N: Sperioli 40.7 92 0.002 32.0 7.0 37 13-71 10-46 (200)
119 PTZ00454 26S protease regulato 40.6 53 0.0011 36.8 5.9 43 9-72 23-65 (398)
120 COG4467 Regulator of replicati 40.3 19 0.00041 33.6 1.9 21 13-33 34-54 (114)
121 PF12808 Mto2_bdg: Micro-tubul 40.3 28 0.0006 28.5 2.7 23 49-71 28-50 (52)
122 cd07821 PYR_PYL_RCAR_like Pyra 40.1 23 0.00049 31.5 2.4 27 461-487 4-30 (140)
123 KOG0288 WD40 repeat protein Ti 39.9 41 0.00088 38.0 4.7 45 10-68 29-73 (459)
124 KOG3156 Uncharacterized membra 39.4 71 0.0015 33.2 6.0 51 2-73 89-139 (220)
125 cd05018 CoxG Carbon monoxide d 38.8 18 0.00038 32.6 1.5 28 461-488 4-31 (144)
126 cd08866 SRPBCC_11 Ligand-bindi 38.3 22 0.00047 32.4 2.1 28 461-488 2-29 (144)
127 smart00338 BRLZ basic region l 38.2 68 0.0015 26.4 4.8 18 13-30 31-48 (65)
128 PF08961 DUF1875: Domain of un 37.9 11 0.00023 39.2 0.0 19 9-27 144-162 (243)
129 PF10482 CtIP_N: Tumour-suppre 37.6 31 0.00067 32.6 2.9 32 10-41 44-75 (120)
130 cd07817 SRPBCC_8 Ligand-bindin 37.6 25 0.00055 31.4 2.4 28 461-488 3-30 (139)
131 cd08901 SRPBCC_CalC_Aha1-like_ 37.2 22 0.00047 32.9 1.9 27 460-486 2-28 (136)
132 KOG4005 Transcription factor X 37.1 54 0.0012 34.7 4.8 21 11-31 100-120 (292)
133 PF14645 Chibby: Chibby family 36.5 35 0.00076 32.0 3.1 22 7-28 70-91 (116)
134 KOG0971 Microtubule-associated 36.4 75 0.0016 39.3 6.5 55 13-73 337-391 (1243)
135 PF07106 TBPIP: Tat binding pr 36.3 49 0.0011 32.2 4.3 55 9-75 80-134 (169)
136 PF10883 DUF2681: Protein of u 36.1 91 0.002 28.1 5.5 11 57-67 53-63 (87)
137 PF15058 Speriolin_N: Sperioli 36.1 36 0.00077 34.8 3.3 28 7-34 11-44 (200)
138 PF06156 DUF972: Protein of un 36.0 43 0.00093 31.0 3.6 25 9-33 30-54 (107)
139 PF07989 Microtub_assoc: Micro 36.0 63 0.0014 28.1 4.4 55 12-72 11-65 (75)
140 PF04999 FtsL: Cell division p 35.6 91 0.002 27.5 5.5 23 55-78 61-83 (97)
141 KOG2761 START domain-containin 35.4 18 0.0004 37.5 1.2 181 421-645 25-213 (219)
142 TIGR03752 conj_TIGR03752 integ 35.4 35 0.00075 39.2 3.4 58 8-71 80-137 (472)
143 cd07812 SRPBCC START/RHO_alpha 35.2 27 0.00058 29.7 2.1 27 462-488 3-29 (141)
144 cd08862 SRPBCC_Smu440-like Lig 35.1 29 0.00062 31.0 2.3 30 459-488 2-31 (138)
145 smart00338 BRLZ basic region l 34.6 52 0.0011 27.1 3.6 28 4-31 36-63 (65)
146 cd07814 SRPBCC_CalC_Aha1-like 34.4 25 0.00055 31.3 1.8 27 461-487 3-29 (139)
147 cd07825 SRPBCC_7 Ligand-bindin 34.1 30 0.00064 31.5 2.3 26 462-487 4-29 (144)
148 KOG4343 bZIP transcription fac 33.8 33 0.00072 39.8 3.0 19 51-69 317-335 (655)
149 PF07246 Phlebovirus_NSM: Phle 32.3 77 0.0017 33.9 5.2 23 50-72 209-231 (264)
150 TIGR02449 conserved hypothetic 31.9 1E+02 0.0022 26.4 4.8 35 13-68 12-46 (65)
151 cd07818 SRPBCC_1 Ligand-bindin 31.8 89 0.0019 28.6 5.1 31 460-490 4-34 (150)
152 PHA03162 hypothetical protein; 31.7 1.4E+02 0.003 29.0 6.2 24 12-35 17-40 (135)
153 COG1675 TFA1 Transcription ini 30.5 50 0.0011 33.3 3.3 35 35-69 134-168 (176)
154 PF15035 Rootletin: Ciliary ro 29.2 1.1E+02 0.0024 30.8 5.5 23 9-31 82-104 (182)
155 PF05494 Tol_Tol_Ttg2: Toluene 29.2 1.6E+02 0.0035 28.5 6.5 56 246-306 85-140 (170)
156 PF03364 Polyketide_cyc: Polyk 29.0 2.5E+02 0.0055 24.9 7.4 103 218-348 2-106 (130)
157 KOG4005 Transcription factor X 28.9 84 0.0018 33.3 4.7 19 9-27 105-123 (292)
158 smart00224 GGL G protein gamma 28.7 32 0.00068 28.8 1.3 16 53-68 2-17 (63)
159 PF04977 DivIC: Septum formati 28.5 56 0.0012 27.2 2.8 16 54-69 35-50 (80)
160 PF10883 DUF2681: Protein of u 28.2 65 0.0014 29.0 3.3 32 2-33 24-55 (87)
161 cd07822 SRPBCC_4 Ligand-bindin 27.9 47 0.001 29.4 2.4 26 462-487 4-29 (141)
162 PF07558 Shugoshin_N: Shugoshi 27.9 61 0.0013 25.7 2.7 17 8-24 28-44 (46)
163 PRK00888 ftsB cell division pr 27.1 55 0.0012 30.0 2.7 25 7-31 33-57 (105)
164 COG5570 Uncharacterized small 27.0 1E+02 0.0022 25.5 3.8 36 25-71 19-54 (57)
165 PF10226 DUF2216: Uncharacteri 26.7 64 0.0014 33.0 3.3 24 8-31 55-78 (195)
166 COG1792 MreC Cell shape-determ 26.6 1.2E+02 0.0025 32.6 5.5 43 15-75 66-108 (284)
167 TIGR02209 ftsL_broad cell divi 26.1 1.6E+02 0.0035 25.1 5.3 24 55-78 43-72 (85)
168 PRK15422 septal ring assembly 26.1 81 0.0018 28.0 3.4 23 10-32 48-70 (79)
169 cd07820 SRPBCC_3 Ligand-bindin 25.7 45 0.00099 30.6 2.0 26 462-487 3-28 (137)
170 PF14389 Lzipper-MIP1: Leucine 25.3 3E+02 0.0065 24.5 7.0 66 7-72 7-76 (88)
171 PF06305 DUF1049: Protein of u 24.8 55 0.0012 26.8 2.1 23 6-28 46-68 (68)
172 PF12711 Kinesin-relat_1: Kine 24.6 90 0.0019 28.1 3.5 14 8-21 24-37 (86)
173 PF08172 CASP_C: CASP C termin 24.6 78 0.0017 33.4 3.6 44 9-73 94-137 (248)
174 cd08898 SRPBCC_CalC_Aha1-like_ 24.2 57 0.0012 29.5 2.3 28 461-488 4-31 (145)
175 PHA03155 hypothetical protein; 24.1 35 0.00075 32.2 0.9 24 45-68 10-33 (115)
176 COG3074 Uncharacterized protei 23.7 1E+02 0.0023 26.9 3.5 27 7-33 45-71 (79)
177 PHA03162 hypothetical protein; 23.6 42 0.00091 32.4 1.3 25 44-68 14-38 (135)
178 PHA02562 46 endonuclease subun 23.6 1.9E+02 0.0041 33.0 6.8 37 33-71 284-320 (562)
179 PRK13169 DNA replication intia 23.1 99 0.0022 28.9 3.6 24 11-34 32-55 (110)
180 PHA03155 hypothetical protein; 23.1 80 0.0017 29.8 3.0 24 12-35 12-35 (115)
181 PF05864 Chordopox_RPO7: Chord 22.8 88 0.0019 26.3 2.8 34 34-72 5-38 (63)
182 PF05812 Herpes_BLRF2: Herpesv 22.2 1.3E+02 0.0029 28.6 4.2 25 12-36 7-31 (118)
183 PF07151 DUF1391: Protein of u 22.1 42 0.00092 26.6 0.8 8 364-371 38-45 (49)
184 TIGR02209 ftsL_broad cell divi 22.1 99 0.0021 26.4 3.3 29 5-33 28-56 (85)
185 cd08893 SRPBCC_CalC_Aha1-like_ 21.9 55 0.0012 29.2 1.7 25 463-487 5-29 (136)
186 cd00068 GGL G protein gamma su 21.9 52 0.0011 27.0 1.4 16 53-68 2-17 (57)
187 cd07824 SRPBCC_6 Ligand-bindin 21.8 62 0.0013 30.0 2.1 37 461-502 4-40 (146)
188 PF09297 zf-NADH-PPase: NADH p 21.8 30 0.00064 24.9 -0.1 14 32-45 2-15 (32)
189 PRK11415 hypothetical protein; 21.8 3.7E+02 0.0079 23.2 6.6 22 49-70 45-66 (74)
190 PF00170 bZIP_1: bZIP transcri 21.5 2.3E+02 0.005 23.2 5.2 34 13-67 31-64 (64)
191 PRK03918 chromosome segregatio 21.5 1.5E+02 0.0032 35.9 5.7 13 33-45 435-447 (880)
192 PF05812 Herpes_BLRF2: Herpesv 21.2 50 0.0011 31.3 1.3 24 46-69 6-29 (118)
193 TIGR00373 conserved hypothetic 21.1 64 0.0014 31.6 2.1 11 35-45 130-140 (158)
194 PF08327 AHSA1: Activator of H 21.0 1E+02 0.0023 27.0 3.3 20 467-486 1-20 (124)
195 PF07989 Microtub_assoc: Micro 20.6 1.2E+02 0.0026 26.4 3.4 25 8-32 43-67 (75)
196 PF05557 MAD: Mitotic checkpoi 20.3 1.3E+02 0.0029 36.0 4.9 63 7-69 509-585 (722)
197 PF06677 Auto_anti-p27: Sjogre 20.2 89 0.0019 24.3 2.2 21 25-45 9-29 (41)
198 TIGR02894 DNA_bind_RsfA transc 20.1 1.2E+02 0.0026 30.3 3.7 38 11-69 100-137 (161)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.6e-91 Score=701.65 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=220.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHh
Q 006356 149 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 228 (648)
Q Consensus 149 ~~~l~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~l 228 (648)
|++|++||++||+||++|||+++|||++..+++ +|+||+|||.++|++..|.++.||++|||||||+|.||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 389999999999999999999999999988777 6999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccccC
Q 006356 229 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 308 (648)
Q Consensus 229 mD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~ 308 (648)
||++||.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 309 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 309 ~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
.+..++++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4444458999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.77 E-value=5.2e-18 Score=165.18 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeeecC--CCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCCh
Q 006356 154 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 231 (648)
Q Consensus 154 ~lA~~Am~Ell~la~~~eplWi~~~--~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD~ 231 (648)
++|+++|.+++++++.++.-|..-. +++ +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 5899999999999999999999855 332 2222222211 1246678899999999999999999998
Q ss_pred h-hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccccCCC
Q 006356 232 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 310 (648)
Q Consensus 232 ~-~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~~~ 310 (648)
. +|-.++- .++.++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.....+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 8998844 47777777743 578888888999999999 9999999999999999999999998654433
Q ss_pred CCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 311 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 311 ~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
..+.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--++.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 13358999999999999999999999999999999999999999999999998889999999988765
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.74 E-value=9.9e-17 Score=156.73 Aligned_cols=201 Identities=35% Similarity=0.536 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeeecCC--CCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhh-HHHHhCCh
Q 006356 155 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 231 (648)
Q Consensus 155 lA~~Am~Ell~la~~~eplWi~~~~--~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~-LVe~lmD~ 231 (648)
-|++++.|+++++...+..|....+ .+ ..|.+.+ .+.+..+.+-|..++|...+.+ +.++|.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998654 22 1111111 1113557899999999999997 55666665
Q ss_pred hhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecc-cccccceeeEEEEeeeeecCceEEEEEEecccccCCC
Q 006356 232 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 310 (648)
Q Consensus 232 ~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~~~ 310 (648)
.+...+-..+..++.++.++.+ . .++|.-+..+ +| ++.|||.++|++++.++|.|+|+..|++.... +
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~--~i~~~~~~~~~~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p 137 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------T--VIYHYVSKFVAGP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-P 137 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------C--eEEEEEEecccCc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-C
Confidence 2222233334557888877633 2 3444433333 35 45599999999999999999999999986432 2
Q ss_pred CCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHHH
Q 006356 311 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 379 (648)
Q Consensus 311 ~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqcer 379 (648)
..+.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 138 ~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 138 PTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 123589999999999999999999999999999999998889999999999999999999999999973
No 4
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.32 E-value=4e-11 Score=114.02 Aligned_cols=186 Identities=19% Similarity=0.304 Sum_probs=137.2
Q ss_pred HHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCCh---hhh
Q 006356 158 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP---NRW 234 (648)
Q Consensus 158 ~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD~---~~W 234 (648)
+|..+++.+.+.+ ..|-...+.+ +..-|.+.++.. ....-|..+.|..++.++.++|+|. .+|
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 7898754332 222344444322 2367889999999999999999994 455
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccccCCCCCCC
Q 006356 235 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPA 314 (648)
Q Consensus 235 ~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~~~~~~~ 314 (648)
-.. +.+++.++.++. ..+++|..+..|.| ++.|||.++|++.+.++|.++++..|+|... .+..+.
T Consensus 68 ~~~----~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~ 133 (193)
T cd00177 68 DKN----FEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKG 133 (193)
T ss_pred hhc----ceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCC
Confidence 443 334555554432 27889999999999 9999999999999999999999999999741 122225
Q ss_pred cccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHH
Q 006356 315 FVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 375 (648)
Q Consensus 315 ~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqR 375 (648)
++|++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 134 ~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 134 YVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred cEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 799999999999999999999999999999886543 344555555656666666644
No 5
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.14 E-value=2.6e-09 Score=107.18 Aligned_cols=201 Identities=12% Similarity=0.169 Sum_probs=147.1
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeE-EechhhHHHHhCCh---h
Q 006356 157 LAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---N 232 (648)
Q Consensus 157 ~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV-~m~~~~LVe~lmD~---~ 232 (648)
++.+++|+.++..+ .-|-...+... .+.|.+.. .+...-.-|..+.+ ...+..+.+.|+|. .
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 37889999999754 47987543320 22222211 22333455776765 57888999999995 6
Q ss_pred hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccccCCCCC
Q 006356 233 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGA 312 (648)
Q Consensus 233 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~~~~~ 312 (648)
+|-..+ ..++.++-+. ....++|..+..|-| |..|||.++|..+..+ |.++|+..|++... .|..
T Consensus 75 ~Wd~~~----~e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~ 139 (222)
T cd08871 75 TWDSNM----IESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPR 139 (222)
T ss_pred hhhhhh----ceeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCC
Confidence 676652 2356666553 223789999999988 8999999999998776 88899999987432 2222
Q ss_pred CCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 006356 313 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 390 (648)
Q Consensus 313 ~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqcerla~l~~~~i~~ 390 (648)
+.++|.....+|++|++.+++.|+|||+-|++..-+ +|. -+++....-.+-.++..|.++|+...-.+..+-|.
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999999999999988765 443 24666666667799999999999999988887764
No 6
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.05 E-value=7.3e-09 Score=102.84 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeecCC-CCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCC-
Q 006356 153 LELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 230 (648)
Q Consensus 153 ~~lA~~Am~Ell~la~~~eplWi~~~~-~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD- 230 (648)
-.++..|.+|++++.+ .+.-|-...+ .+ .+.|.+.. .++..-.-|..+.+..++.++++.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~----------i~v~~~~~----~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 4 KVIAEKLANEALQYIN-DTDGWKVLKTVKN----------ITVSWKPS----TEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHhc-CcCCcEEEEcCCC----------cEEEEecC----CCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 4578899999999987 4478977432 22 12221111 122222358888999999999999998
Q ss_pred ----hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeec-ccccccceeeEEEEeeeeecCceEEEEEEeccc
Q 006356 231 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 305 (648)
Q Consensus 231 ----~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~ 305 (648)
+.+|... +..++.++-|.. ...++|..+-- +.++|..|||.++||.++.++|.++++-.|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~--------~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISE--------DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCC--------CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678755 445777776641 12455553222 235799999999999999999999999999864
Q ss_pred ccCCCCCCCcccccccCCceeEeecC--CCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHH
Q 006356 306 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 377 (648)
Q Consensus 306 ~~~~~~~~~~~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqc 377 (648)
-. .|..+.++|+...++|++|++.+ ++.|+|||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 42 22223689999999999999886 57899999999987643 33 34566666666667888888764
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.04 E-value=8.7e-09 Score=102.43 Aligned_cols=194 Identities=15% Similarity=0.235 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeecCC-C-CcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHH-h
Q 006356 152 FLELALAAMDELVKMAQTDEPLWIRSFE-G-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-L 228 (648)
Q Consensus 152 l~~lA~~Am~Ell~la~~~eplWi~~~~-~-gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~-l 228 (648)
-..+++.|++|++.+.. ++-|-...+ . | .+.|.+.. .| ..-.-|..++|...+..+.+. +
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~----------i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~ 68 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWG----------DVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELV 68 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCC----------CEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHH
Confidence 46788999999999954 558977442 2 2 12222211 11 114578889999999998764 4
Q ss_pred CC---hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecc-cccccceeeEEEEeeeeecCceEEEEEEecc
Q 006356 229 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSID 304 (648)
Q Consensus 229 mD---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLVp~Re~~fLRyckql~~G~WaVvDvSld 304 (648)
.| +.+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++
T Consensus 69 ~d~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~ 135 (208)
T cd08868 69 LNVESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVE 135 (208)
T ss_pred cCccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEecc
Confidence 45 35777662 2244444443 2235666444333 3689999999999999866 77999999987
Q ss_pred cccCCCCCCCcccccccCCceeEeecCC--CceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 006356 305 TIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 380 (648)
Q Consensus 305 ~~~~~~~~~~~~r~~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqcerl 380 (648)
... .|..+.++|+...++|++|+++++ +.|+|||+-|++..-+ +|.- ++++.+.-+.-.++..|+++|+.|
T Consensus 136 h~~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 136 HPA-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCC-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 321 122235899999999999999987 6899999999987754 4432 377778888889999999998753
No 8
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.84 E-value=6.3e-08 Score=97.33 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCC-CCCCeeeeeeeeeeEEechhhHHHHhCCh
Q 006356 153 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMDP 231 (648)
Q Consensus 153 ~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~-~~g~~~EASR~~glV~m~~~~LVe~lmD~ 231 (648)
..|+++|++|++++-+ +.-.|-.-.++. +...+ .+ .+.+.+---|..|+|..++.+|+|.+-|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~~v~-----~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~ 68 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KITVS-----WKPSRKYHGNLYRVEGIIPESPAKLIQFMYQP 68 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecCC---------ceEEE-----EEEcCCCCceEEEEEEEecCCHHHHHHHHhcc
Confidence 4689999999999977 557897743331 01111 11 12344456799999999999999999987
Q ss_pred hhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee-cccccccceeeEEEEeeeeecCceEEEEEEecccccCCC
Q 006356 232 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 310 (648)
Q Consensus 232 ~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~~~ 310 (648)
+...+-=+ .+..++.++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-.- |
T Consensus 69 e~r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 69 EHRIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred chhhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 64443222 345566666554 22256675554 3457899999999999999999999999999974321 2
Q ss_pred CCCCcccccccCCceeEeecCCC--ceEEEEEEeeeeccc
Q 006356 311 GAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 348 (648)
Q Consensus 311 ~~~~~~r~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~ 348 (648)
..+.++|++-.|+||+|++.+++ +|+++|+-+++..-+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 22368999999999999999874 899999999776633
No 9
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.68 E-value=3.8e-07 Score=91.87 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=99.2
Q ss_pred CCeeeeeeeeeeEEechhhH-HHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeE
Q 006356 205 GFVTEASRETGMVIINSLAL-VETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 283 (648)
Q Consensus 205 g~~~EASR~~glV~m~~~~L-Ve~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~ 283 (648)
+...-+-|....|.-.+..+ -.++.++.+|-..|-. +++++-|. +...+.|--+.-|-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~----~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQ----WKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcce----eEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 34445677777777777766 4467778888887543 77777665 2246777777777776 999999
Q ss_pred EEEeeee-ecCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecc
Q 006356 284 FLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDE 347 (648)
Q Consensus 284 fLRyckq-l~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~ 347 (648)
.+|+-++ +++|.++|+..|++.....+ ..++|+..+-+|++|+++++|.|+||++-|++..-
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG 177 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKG 177 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCC
Confidence 9999765 57999999999999764322 24799999999999999999999999999998643
No 10
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.67 E-value=7.6e-07 Score=89.25 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCCh-
Q 006356 153 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP- 231 (648)
Q Consensus 153 ~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD~- 231 (648)
.+++++|+++++.+-+ .+..|-...+.. +.+.|.+... .+.+-.-|.-|+|..++.+|++.|+|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhcc
Confidence 5789999999999874 667897743321 1223322110 111112688899999999999999965
Q ss_pred ----hhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccc---cccceeeEEEEeeeeecCceEEEEEEecc
Q 006356 232 ----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSID 304 (648)
Q Consensus 232 ----~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP---LVp~Re~~fLRyckql~~G~WaVvDvSld 304 (648)
.+|-..+ ..++.++-|. +...+.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|..
T Consensus 70 ~~~r~~W~~~~----~~~~vle~id--------~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~ 135 (208)
T cd08903 70 GGLRVKWDQNV----KDFEVVEAIS--------DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE 135 (208)
T ss_pred chhhhhhhhcc----ccEEEEEEec--------CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc
Confidence 5888762 2345555444 12233443 45655 79999999999999999999887777765
Q ss_pred cccCCCCCCCcccccccCCceeEeecCC--CceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHH
Q 006356 305 TIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 377 (648)
Q Consensus 305 ~~~~~~~~~~~~r~~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqc 377 (648)
.-. -|..+.++|++..|+|++|.+.++ +.|+|+|+-|++.-- .+| +.++++.++=...-.+..|+++.
T Consensus 136 h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 136 HPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred CCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 421 122235899999999999999964 589999998887642 354 34454433333334455555543
No 11
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.64 E-value=4.2e-07 Score=90.31 Aligned_cols=168 Identities=13% Similarity=0.241 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhcCCCCCeeecCC-CCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCCh-hhh
Q 006356 157 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 234 (648)
Q Consensus 157 ~~Am~Ell~la~~~eplWi~~~~-~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD~-~~W 234 (648)
+.+.++|++-+...+.-|.-..+ .| .+| |.|.. +.++..-+=|..++|.-.+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999987432 23 222 22222 12444567788889998899999877764 466
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeee-ecCceEEEEEEecccccCCCCCC
Q 006356 235 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 313 (648)
Q Consensus 235 ~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckq-l~~G~WaVvDvSld~~~~~~~~~ 313 (648)
-.. +.+++.++-++ ....+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~----~~~~~vie~id--------~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDD----LLQWKVVETLD--------EDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chh----hheEEEEEEec--------CCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 665 23356666554 123678888888877 59999999998875 67889999999986321111 1
Q ss_pred CcccccccCCceeEeecCCCceEEEEEEeeeecccccccc
Q 006356 314 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 353 (648)
Q Consensus 314 ~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 353 (648)
.++|++.+++|++|++..+|.|+|||+-|++.-- .+|.-
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~w 174 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPEW 174 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCce
Confidence 5899999999999999999999999999998642 35543
No 12
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.57 E-value=7e-07 Score=102.78 Aligned_cols=129 Identities=17% Similarity=0.286 Sum_probs=104.1
Q ss_pred eeeeeeeeEEechhhHHHHhCChh----hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee--cccccccceee
Q 006356 209 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 282 (648)
Q Consensus 209 EASR~~glV~m~~~~LVe~lmD~~----~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLVp~Re~ 282 (648)
-+=|+.|+|...+.+|.|.+|+.+ +|=.. +..++-++-|. |...++|.-++ .....+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~----~~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCS----FQYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhc----ccceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999776 66554 45577777664 56678887774 44567777999
Q ss_pred EEEEeeeeecCceEEEEEEecccccCCCCCCCcccccccCCceeEeecC--C--CceEEEEEEeeeeccccc
Q 006356 283 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVTWVEHAEYDESQV 350 (648)
Q Consensus 283 ~fLRyckql~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 350 (648)
+++||-+..+||+++|+=+|+..-.- |..+.++|++..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~c-PP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENC-GPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCC-CCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999999999999999885332 2223589999999999999964 3 379999999999988874
No 13
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.54 E-value=1.2e-06 Score=87.87 Aligned_cols=193 Identities=13% Similarity=0.203 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeecC--CCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHh
Q 006356 151 MFLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 228 (648)
Q Consensus 151 ~l~~lA~~Am~Ell~la~~~eplWi~~~--~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~l 228 (648)
--..++.+|++|++++.+ .+..|-... +.| ..| |.+.|+.. | -+-|.-++|..++.+|++.|
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l 68 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSEL 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHH
Confidence 346789999999999986 666897742 223 112 23333322 1 45666779999999999555
Q ss_pred C-Ch---hhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccc--cccceeeEEEEeeeeecCceEEEEEEe
Q 006356 229 M-DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVS 302 (648)
Q Consensus 229 m-D~---~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--LVp~Re~~fLRyckql~~G~WaVvDvS 302 (648)
. |. .+|... +.-.++|..-. ..-.++|. ..+|.| +|..|||..+|+.++.+++. +++..|
T Consensus 69 ~~d~e~~~~W~~~-------~~~~~vl~~id-----~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s 134 (209)
T cd08905 69 VDRMEQMGEWNPN-------VKEVKILQRIG-----KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMA 134 (209)
T ss_pred Hhchhhhceeccc-------chHHHHHhhcC-----CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEe
Confidence 5 53 566665 44444554332 12245674 667766 79999999999999986654 556677
Q ss_pred cccccCCCCCCCcccccccCCceeEeecCC--CceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 303 IDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 303 ld~~~~~~~~~~~~r~~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
.+.-. -|..+.++|.+..++|++|+++++ |.++|+|+-|++..-+ +|. .|+++.++=..-.++..|+++.+
T Consensus 135 ~~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 135 THFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred ecCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 55321 122226899999999999999988 9999999999987655 443 44666666556678888877654
No 14
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.41 E-value=5.4e-06 Score=83.35 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCC-CCCCeeeeeeeeeeEEechhhHHHHhCC-
Q 006356 153 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD- 230 (648)
Q Consensus 153 ~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~-~~g~~~EASR~~glV~m~~~~LVe~lmD- 230 (648)
..+|.++-+++++--+.++-.|-.-.+.+. -.+..+ +.-|.+---|.-|+|.-.+..|++.+-+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~ 69 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPG 69 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcc
Confidence 567878888899987779999977332221 111122 2244455667778898899999999999
Q ss_pred --hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccccC
Q 006356 231 --PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 308 (648)
Q Consensus 231 --~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~ 308 (648)
+.+|-+. |..++.++-|. .+++-.-|.=.-.+-++|-+|||.-+||+++.++|. ..|=||++.-.
T Consensus 70 ~~r~~Wd~~----v~~~~Iie~Id-------~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~- 136 (202)
T cd08902 70 PYRLDWDSL----MTSMDIIEEFE-------ENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE- 136 (202)
T ss_pred cchhcccch----hhheeHhhhhc-------CCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC-
Confidence 5599876 45566666555 233322255556777799999999999999999998 77788887542
Q ss_pred CCCCCCcccccccCCceeEeecCCC--ceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHH
Q 006356 309 TSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ 376 (648)
Q Consensus 309 ~~~~~~~~r~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRq 376 (648)
+ +|.++|.+..|+||++++.+|| .|+.||+-++|+.-+ |=+-++++.++=.-=-....|+++
T Consensus 137 -~-ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 -A-RPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred -C-CCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 2268999999999999999988 677889999777644 223445444443222334444443
No 15
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.41 E-value=7.7e-06 Score=82.32 Aligned_cols=195 Identities=10% Similarity=0.168 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeee-cC-CCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHH-HH
Q 006356 151 MFLELALAAMDELVKMAQTDEPLWIR-SF-EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 227 (648)
Q Consensus 151 ~l~~lA~~Am~Ell~la~~~eplWi~-~~-~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LV-e~ 227 (648)
-....+++||+++.++... +..|.- .. +.| .+.|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3466799999999999765 457985 22 234 122222111011223 66677778888995 68
Q ss_pred hCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccc--cccceeeEEEEeeeeecCceEEEEEEeccc
Q 006356 228 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 305 (648)
Q Consensus 228 lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--LVp~Re~~fLRyckql~~G~WaVvDvSld~ 305 (648)
|.|.+...+=.+.+ ..++.++-++. .-.+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88876544444442 23444444331 124556 6666664 6899999999999998888 5777788764
Q ss_pred ccCCCCCCCcccccccCCceeEeec--CCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHH
Q 006356 306 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 377 (648)
Q Consensus 306 ~~~~~~~~~~~r~~rlPSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqc 377 (648)
.. .|..+.++|.+..++|++|++. .+|.|+|||+-|+|.--+ +|. .+++..++=..-..+..|.++.
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~---~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPR---YLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 31 1222368999999999999985 577999999999987653 332 3455554444444555555443
No 16
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.23 E-value=1.9e-05 Score=79.29 Aligned_cols=151 Identities=15% Similarity=0.259 Sum_probs=110.6
Q ss_pred eeeeeeeeEE-echhhHHHHhCChh---hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEE
Q 006356 209 EASRETGMVI-INSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 284 (648)
Q Consensus 209 EASR~~glV~-m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~f 284 (648)
-.=|+.+.+. ..+..|.+.|+|.+ +|... +.. .++.++ .+ -.++|-.+..|-| +..||+.+
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~---~~~---~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~ 113 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY---VKE---LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVY 113 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH---HHh---heeecC-------CC-CEEEEEEEEcCCC-CCCceEEE
Confidence 3678888887 79999999999965 56664 221 122222 12 3678999999999 99999999
Q ss_pred EEeeee-ecCc--eEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccc
Q 006356 285 LRFCKQ-HAEG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG 361 (648)
Q Consensus 285 LRyckq-l~~G--~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg 361 (648)
+|-... ..+| .|+|+..|.+.- .-|....++|....-+|++|++..++.|+|+++-|.+-. ..+|. -+++..
T Consensus 114 ~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~ 188 (207)
T cd08910 114 IRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWA 188 (207)
T ss_pred EEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHH
Confidence 964443 3344 689888887643 122223689999999999999998889999999998853 23443 257777
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 006356 362 MGFGAQRWVATLQRQCEC 379 (648)
Q Consensus 362 ~afGA~RWlatLqRqcer 379 (648)
...++..|+..|+..|.+
T Consensus 189 ~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 189 AKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHhhHHHHHHHHHHHhc
Confidence 788888999999888853
No 17
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.15 E-value=5.2e-05 Score=75.93 Aligned_cols=199 Identities=15% Similarity=0.076 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCChh
Q 006356 153 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPN 232 (648)
Q Consensus 153 ~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD~~ 232 (648)
++=+...|+|+.+..+. +.-|....+.. +..=|.|..+ +-..-+-|.-|++.-+...+.++|.|.+
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~~-----~i~v~~r~~~--------~~~~~~~k~e~~i~~~~~~~~~vl~d~~ 69 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKESE-----GIRVYYKFEP--------DGSLLSLRMEGEIDGPLFNLLALLNEVE 69 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccCC-----CeEEEEEeCC--------CCCEEEEEEEEEecCChhHeEEEEehhh
Confidence 44556788899888776 56798854331 1112222222 2224677888999999999999999998
Q ss_pred hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEE-Eeeeee-cCceEEEEEEecccccC--
Q 006356 233 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE-- 308 (648)
Q Consensus 233 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fL-Ryckql-~~G~WaVvDvSld~~~~-- 308 (648)
...+-+|.. ..++.++.++- .-++.|..+.+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 70 ~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~ 139 (215)
T cd08877 70 LYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFL 139 (215)
T ss_pred hHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccc
Confidence 777777763 33455444431 12678888888888 888999975 556777 89999999999985432
Q ss_pred ------CCCCC-CcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 309 ------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 309 ------~~~~~-~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
-|..+ .++|.....+|++|+++++|.++|+++-|++-.-+-+|.=+ ++...--.+...+..|+++|+
T Consensus 140 ~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~l---iN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 140 KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSL---LNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 13233 57999999999999999999999999999763322266533 333333335566777777665
No 18
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.11 E-value=5.1e-05 Score=76.60 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhcCCCCCeee-cCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCC-hhhh
Q 006356 157 LAAMDELVKMAQTDEPLWIR-SFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PNRW 234 (648)
Q Consensus 157 ~~Am~Ell~la~~~eplWi~-~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD-~~~W 234 (648)
++.+++|++.|..--=-|+. +...+ .|+- |.| +..|...-.-|....+.-.+.+++..|+| +.+|
T Consensus 12 ~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~W 78 (204)
T cd08908 12 QDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLW 78 (204)
T ss_pred HHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Eec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHH
Confidence 46777777777654445655 11111 1111 111 22344445667777777788888855555 5678
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeee-eecCceEEEEEEecccccCCCCCC
Q 006356 235 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAP 313 (648)
Q Consensus 235 ~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyck-ql~~G~WaVvDvSld~~~~~~~~~ 313 (648)
-.. +..++.++-++. .-.+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++... .| +
T Consensus 79 d~~----~~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P--~ 142 (204)
T cd08908 79 DVD----LLDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP--V 142 (204)
T ss_pred HHH----hhheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--c
Confidence 876 234666665552 12578888899988 6999999997765 478999999999988432 12 2
Q ss_pred CcccccccCCceeEeecCCCceEEEEEEeeeec
Q 006356 314 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 346 (648)
Q Consensus 314 ~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 346 (648)
..+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 143 ~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 143 AGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred CceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 368999999999999999999999999999753
No 19
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.07 E-value=8.6e-05 Score=72.44 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=106.1
Q ss_pred eeeeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeee
Q 006356 210 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 289 (648)
Q Consensus 210 ASR~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyck 289 (648)
.-|.+++|..++.++.+++.|.+.|.+-=|. +...+||..... + -.++|..+..|=| |..|||.+.|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 5588889999999999999999888766554 344455554321 1 2556666666655 7899999876544
Q ss_pred ee-cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHH
Q 006356 290 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 368 (648)
Q Consensus 290 ql-~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~R 368 (648)
.. ++|..+|.=.|.+.. -|....++|++.+.+|+.|++.++|.|+|+++-|++..-+...-+.+.+. .=+..+
T Consensus 112 ~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHHH
Confidence 33 367777766666542 12122578999999999999999999999999999886543334444443 334667
Q ss_pred HHHHHHHHH
Q 006356 369 WVATLQRQC 377 (648)
Q Consensus 369 WlatLqRqc 377 (648)
++++|.++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 888887665
No 20
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.98 E-value=8e-05 Score=75.14 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=92.6
Q ss_pred CCCCeeeeeeeeeeEEechhhHHHHhCChh---hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccc-c
Q 006356 203 PNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLV-P 278 (648)
Q Consensus 203 ~~g~~~EASR~~glV~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLV-p 278 (648)
.++|++ -+.|...+.+|.+.|.|.. +|-.+ +++.+||..-. ....++|.....|=|+. +
T Consensus 44 ~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~ 106 (205)
T cd08874 44 YHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLKQ 106 (205)
T ss_pred cceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCCC
Confidence 346664 4477889999999998875 56665 56666766432 33467777776666553 9
Q ss_pred ceeeEEEEeeeeecCceEEEEEEeccc-ccCCCCCCCcccccccCCceeEeec---CCCceEEEEEEeeeecccccc
Q 006356 279 VREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 351 (648)
Q Consensus 279 ~Re~~fLRyckql~~G~WaVvDvSld~-~~~~~~~~~~~r~~rlPSGclIq~~---~nG~skVtwVeH~e~d~~~vh 351 (648)
.|||..+|-....+++.. |.=.|++. ..+.. .+.++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 107 ~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 107 PRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 999999995555455544 66677775 22211 1148999999999999999 999999999999987533343
No 21
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.77 E-value=0.00013 Score=73.61 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCC-CcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeE-EechhhHHHHhCChhh
Q 006356 156 ALAAMDELVKMAQTDEPLWIRSFEG-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPNR 233 (648)
Q Consensus 156 A~~Am~Ell~la~~~eplWi~~~~~-gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV-~m~~~~LVe~lmD~~~ 233 (648)
-+..+++|++-+....=-|....+. + .|+- .|.-++ |...--=|.+.-| ...+.-|-++|.|+..
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~-vev~-----~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~ 77 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDN-TELA-----CKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHL 77 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCC-cEEE-----EEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhh
Confidence 3477889999998777789874322 2 2221 111011 1111111222222 2345677899999999
Q ss_pred hhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeee-eecCceEEEEEEecccccCCCCC
Q 006356 234 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 312 (648)
Q Consensus 234 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyck-ql~~G~WaVvDvSld~~~~~~~~ 312 (648)
|=+.+ -+.++++.|..-. ++-|=-+.-| +.+|.|||.+||.-+ .+..|.-+|+.+|++....-+ .
T Consensus 78 WD~~m----~e~~~Ie~Ld~n~--------dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~ 143 (205)
T cd08907 78 WDEDL----LHSQVIEALENNT--------EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-E 143 (205)
T ss_pred hhHHH----HhhhhheeecCCC--------EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-C
Confidence 99873 4478888886221 3333333333 558999999999864 467789999999998653322 1
Q ss_pred CCcccccccCCceeEeecCCCceEEEEEEeeeeccc
Q 006356 313 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 348 (648)
Q Consensus 313 ~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~ 348 (648)
.-+|+--+=|||||++++.|.|+||-+-|++..-+
T Consensus 144 -~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 144 -AGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred -CCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 23999999999999999999999999999987544
No 22
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.76 E-value=0.00081 Score=67.35 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=116.5
Q ss_pred eeeeeeeeE-EechhhHHHHhCChh---hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEE
Q 006356 209 EASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 284 (648)
Q Consensus 209 EASR~~glV-~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~f 284 (648)
-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|..... .| ..++|-.+..|-|+ -.||+.+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~~---~~-~~i~y~~~~~P~P~-s~RD~V~ 117 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDEK---SG-TEIVRWVKKFPFPL-SDREYVI 117 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecCC---CC-cEEEEEEEECCCcC-CCceEEE
Confidence 456778877 569999999999965 56665 333444443111 02 47899999999988 8999999
Q ss_pred EEeeeeecCceEEEEEEecccccCCCCCCCcccccccCCceeEeec--CCCceEEEEEEeeeecccccccccccccccch
Q 006356 285 LRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 362 (648)
Q Consensus 285 LRyckql~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 362 (648)
.|-..+..+|..+|+=.|++... .|.. .++|.+..=||++|++. .+|.++++++-|.+- ...+|. -|++...
T Consensus 118 ~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~ 191 (209)
T cd08870 118 ARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAV 191 (209)
T ss_pred EEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHH
Confidence 98777777999999888877521 1211 48999999999999999 788999999999863 234554 4688889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006356 363 GFGAQRWVATLQRQCEC 379 (648)
Q Consensus 363 afGA~RWlatLqRqcer 379 (648)
..|+..++..|.+.|..
T Consensus 192 ~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 192 KRGMPGFLKKLENALRK 208 (209)
T ss_pred HhhhHHHHHHHHHHHhc
Confidence 99999999999998853
No 23
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.66 E-value=0.0017 Score=66.82 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=123.0
Q ss_pred HHHHHHHHHhhcC--CCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEE-echhhHHHHhCChhh
Q 006356 157 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 233 (648)
Q Consensus 157 ~~Am~Ell~la~~--~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~-m~~~~LVe~lmD~~~ 233 (648)
.+-.+|.+++|+. ++.-|--..+.+. .+.|.+.. ...|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3556788888865 5557976443321 23332221 11244445678888888 889999999999874
Q ss_pred hhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecC-------ceEEEEEEecccc
Q 006356 234 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTI 306 (648)
Q Consensus 234 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~-------G~WaVvDvSld~~ 306 (648)
..+=... +...+||..-.. ...+.|..+-.|-| +..|||.|+|+-++.++ +.|+|+..|.+.-
T Consensus 78 r~~Wd~~----~~~~~vie~l~~-----~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~ 147 (235)
T cd08872 78 RMDWETT----LENFHVVETLSQ-----DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHD 147 (235)
T ss_pred HHHHHhh----hheeEEEEecCC-----CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCc
Confidence 4333222 344445544322 22567888888999 69999999999999876 7899999998743
Q ss_pred cCCCCCCCcccccc---cCCceeEee------c--CCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHH
Q 006356 307 RETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 375 (648)
Q Consensus 307 ~~~~~~~~~~r~~r---lPSGclIq~------~--~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqR 375 (648)
. .|..+.++|.+. +=.|.+|.+ + .||.|+||++-|++---+--.-+ ++.....++-++|..|--
T Consensus 148 ~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~wv----vn~~~k~~~P~~l~~~~~ 222 (235)
T cd08872 148 S-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPASV----LRAVYKREYPKFLKRFTS 222 (235)
T ss_pred c-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHHH----HHHHHHhhchHHHHHHHH
Confidence 2 122225777765 223333332 1 58899999999997554433333 455555666777777655
Q ss_pred HH
Q 006356 376 QC 377 (648)
Q Consensus 376 qc 377 (648)
++
T Consensus 223 ~~ 224 (235)
T cd08872 223 YV 224 (235)
T ss_pred HH
Confidence 43
No 24
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.58 E-value=0.0014 Score=65.69 Aligned_cols=152 Identities=11% Similarity=0.118 Sum_probs=111.1
Q ss_pred eeeeeeeE-EechhhHHHHhCChh---hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEE
Q 006356 210 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 285 (648)
Q Consensus 210 ASR~~glV-~m~~~~LVe~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fL 285 (648)
.=|+.+++ ...+..+++.|+|.+ +|-.. +...++|.-... -..+++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~~----~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDPE----TGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccCC----CCCEEEEEEEECCCCC-CCccEEEE
Confidence 46665644 788999999999986 56665 344556654221 1237899999999996 89999999
Q ss_pred Eeeeeec-CceEEEEEEecccccCCCCCCCcccccccCCceeEeecC---CCceEEEEEEeeeecccc-ccccccccccc
Q 006356 286 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVTWVEHAEYDESQ-VHQLYKPLIIS 360 (648)
Q Consensus 286 Ryckql~-~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~---nG~skVtwVeH~e~d~~~-vh~lyrpl~~S 360 (648)
|-..+.+ +|.++|+-.|++... .|..+.++|.....+|++|++.. ++.++|+++-|. |... +|.- +++.
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~ 187 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSW 187 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHH
Confidence 8876664 577889888887421 12222589999999999999984 677999988885 6553 6653 4666
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 006356 361 GMGFGAQRWVATLQRQCEC 379 (648)
Q Consensus 361 g~afGA~RWlatLqRqcer 379 (648)
-..-++-.|+..|++-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6777788999999887753
No 25
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.27 E-value=0.017 Score=58.28 Aligned_cols=175 Identities=19% Similarity=0.280 Sum_probs=101.3
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 501 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLP-vpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~I 501 (648)
..++|... . ..++|+|..|+..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~-~--~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLK-Y--NKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEE-E--cCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 34689977 3 35789999988632 3344556666666 9999999999999999999974322 2334444
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEcccCCCCceEEEEe-eccccchhhhhcCCCCCCc--cccCCCcEEccCCC
Q 006356 502 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGP 577 (648)
Q Consensus 502 a~G~~~gN~VSllr~~~~~-~~~~~mliLQesctd~sgS~vVyA-PVD~~~m~~vm~G~Dss~v--~LLPSGF~IlPdg~ 577 (648)
+.++.|.-...+..- -...+.++++..+.+. ++++|.+ .++-+.+ ...+.+| ..+.+||.|-|.+
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~- 158 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG- 158 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC-
Confidence 344555555444222 3456777777655444 7766543 3432221 1112222 2566777777733
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh-HhhhhhHHHHHHHHhhc
Q 006356 578 DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 645 (648)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t-V~~li~~TVq~Ik~AL~ 645 (648)
.++|.+|.-+|+=.... +..--|.. +.+..-.++++++.|+.
T Consensus 159 ----------------------~~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ----------------------PKGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------------------CCCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 13577777766654422 22212222 23334467778877763
No 26
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.23 E-value=0.0035 Score=64.80 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCeeeeeeeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEE
Q 006356 205 GFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 284 (648)
Q Consensus 205 g~~~EASR~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~f 284 (648)
.|++|+. |...+.+|++.|.|.+...+=.+ .++..++|..-. ....++|..+..|. -+..|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEE
Confidence 4555554 88899999999999875443322 245555655322 13356776655555 478999999
Q ss_pred EEeeeeec-C-ceEEEEEEecc-cccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeee
Q 006356 285 LRFCKQHA-E-GVWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 344 (648)
Q Consensus 285 LRyckql~-~-G~WaVvDvSld-~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e 344 (648)
+|+-++.. + +.++|.=.|+. ... |..+.++|.+.+=+|++|++.++|.|+||.+-|++
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~--Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRV--PQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccC--CCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 99999844 4 34777777765 221 12235899999999999999999999999999986
No 27
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.75 E-value=0.021 Score=59.27 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=81.7
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccc--cccceeeEEEEeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 289 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--LVp~Re~~fLRyck 289 (648)
|.-+.|...+..|.+.|.|.+...+=.+. +...++|...... . . +|...- +.+ -+..|||-.++...
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~~----~-~-vY~v~~-~p~~~pvs~RDfV~~~s~~ 152 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDED----D-A-IYHVTS-PSLSGHGKPQDFVILASRR 152 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCCC----c-E-EEEEec-CCCCCCCCCCeEEEEEEEE
Confidence 33468899999999999998754444333 3444555443321 1 1 233321 222 58899999998886
Q ss_pred eec-Cc-eEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeee
Q 006356 290 QHA-EG-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 344 (648)
Q Consensus 290 ql~-~G-~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e 344 (648)
+.+ +| .++|+=.|...-. -|..+.++|.+.+..|++|++.++|.|+||++-|++
T Consensus 153 ~~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d 208 (240)
T cd08913 153 KPCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT 208 (240)
T ss_pred eccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC
Confidence 654 44 4666665554322 222236899999999999999999999999999988
No 28
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.73 E-value=0.11 Score=51.86 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=101.8
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 502 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia 502 (648)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||...- ..+.+-+|
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 46899966 2 35799999999732 222 44568888899999999999988 6899996321 12333333
Q ss_pred cCCCCCceEEEEEeccCCC-CCCceEEEEcccC-CCCceEEEEe-ecccc-chhhhhcCCCCCC--ccccCCCcEEccCC
Q 006356 503 KGQDHGNCVSLLRASAINA-NQSSMLILQETCT-DAAGSLVVYA-PVDIP-AMHVVMNGGDSAY--VALLPSGFAIVPDG 576 (648)
Q Consensus 503 ~G~~~gN~VSllr~~~~~~-~~~~mliLQesct-d~sgS~vVyA-PVD~~-~m~~vm~G~Dss~--v~LLPSGF~IlPdg 576 (648)
+..+.|--...+...+ ...++.+++-... +..|++++.. -|+-+ .+ -+.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECC
Confidence 2334433333332222 3345655553232 3455665433 23221 10 0122 35778889888843
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHhHhhhhhHHHHHHHHhhcc
Q 006356 577 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQC 646 (648)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~tV~~li~~TVq~Ik~AL~~ 646 (648)
. ++|.+|--.|+=.. ..+..=-+-..+++++..+++|++.+.|
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~----G~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLR----GRSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred C-----------------------CCeEEEEEEEECCC----CCCCceeecchHhHHHHHHHHHHhhccC
Confidence 1 35666665555433 2222223444668899999999998876
No 29
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.63 E-value=0.018 Score=59.64 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=89.6
Q ss_pred eeeeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeeccc-ccccceeeEEEEee
Q 006356 210 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 288 (648)
Q Consensus 210 ASR~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~S-PLVp~Re~~fLRyc 288 (648)
+-|.-..+...+.+|.+.|.|.+...+=.+. +...++|..-... . . +|...-.|- |+ ..|||-++|=-
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI~qld~~---~--~-vY~~~~pPw~Pv-k~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVIDWVSED---D--Q-IYHITCPIVNND-KPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEEEEeCCC---c--C-EEEEecCCCCCC-CCceEEEEEEE
Confidence 3444457788999999999998754443333 4444555433221 1 2 466554443 44 89999998776
Q ss_pred eeec-Cce-EEEEEEeccc-ccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccc
Q 006356 289 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 353 (648)
Q Consensus 289 kql~-~G~-WaVvDvSld~-~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 353 (648)
.+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 6655 885 8888888775 222 2235899999999999999999999999999995 4556544
No 30
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.39 E-value=0.3 Score=49.82 Aligned_cols=174 Identities=18% Similarity=0.270 Sum_probs=103.8
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhh-hcCCCCcceee
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDI-LSNGGPMQEMA 499 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLP-vpp~~vf~FLRde~~R~eWd~-Ls~G~~vqe~~ 499 (648)
....+|.... ..++|.|.++|..+ |.|.-++. .|+=+| +|.+.|+|.|+| |..||. |.... .|.
T Consensus 24 ek~kgW~~~~---~~~~vev~~kk~~d--~~~l~lwk---~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSAP---GPDNTELACKKVGD--GHPLRLWK---VSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceeec---CCCCcEEEEEeCCC--CCceEEEE---EEEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 4557899762 36889999999743 55644554 455568 999999999999 999995 33322 222
Q ss_pred ecccCCCCCceEEEEEeccCCCCCCceEEEEcccC--CCCceEEEEee-ccccchhhhhcCCCCCCccccCCCcEEccCC
Q 006356 500 HIAKGQDHGNCVSLLRASAINANQSSMLILQETCT--DAAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 576 (648)
Q Consensus 500 ~Ia~G~~~gN~VSllr~~~~~~~~~~mliLQesct--d~sgS~vVyAP-VD~~~m~~vm~G~Dss~v~LLPSGF~IlPdg 576 (648)
.| ++.|.|-=.-.+...+-.+.-|++|-++- .+.|++++.+- |+=+.-. ..|| --...|=|||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 23 34444544444444455566677777773 35677666542 2221111 1111 1123444666666633
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHhH-hhhhhHHHHHHHHhhc
Q 006356 577 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 645 (648)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~tV-~~li~~TVq~Ik~AL~ 645 (648)
.|+|-||==.|+=.... .++=+..| ..+++.-+.||+..+.
T Consensus 162 -----------------------~g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 -----------------------MGRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred -----------------------CCCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 25677776666655544 44445444 5667778888888764
No 31
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.32 E-value=0.24 Score=50.23 Aligned_cols=175 Identities=17% Similarity=0.240 Sum_probs=106.4
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeeccc
Q 006356 424 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAK 503 (648)
Q Consensus 424 ~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia~ 503 (648)
.++|... . ..+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~-k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I-- 87 (204)
T cd08904 21 TSGWKVV-K--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI-- 87 (204)
T ss_pred ccCCeEE-e--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe--
Confidence 4899977 2 348999999988654442 3466777899999999999999999999974322 3344444
Q ss_pred CCCCCceEEEEEeccC--C-CCCCceEEEEcccC-CCCceEEE-EeeccccchhhhhcCCCCCCc--cccCCCcEEccCC
Q 006356 504 GQDHGNCVSLLRASAI--N-ANQSSMLILQETCT-DAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 576 (648)
Q Consensus 504 G~~~gN~VSllr~~~~--~-~~~~~mliLQesct-d~sgS~vV-yAPVD~~~m~~vm~G~Dss~v--~LLPSGF~IlPdg 576 (648)
+...+|...+..+. + -+..+.+.+|-..- +. +.+++ +.-|+-+.+ ...+.+| -..|+||.|.|..
T Consensus 88 --d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~-----Pp~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 --DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQC-----PPSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred --CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCC-----CCCCCcEEEeeeccEEEEEECC
Confidence 66667777665421 1 23467777764222 22 33433 444444432 1123444 3789999999933
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh-HhhhhhHHHHHHHHhh
Q 006356 577 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAAL 644 (648)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t-V~~li~~TVq~Ik~AL 644 (648)
.. .++|.||.-+|+=.. -.|...-|.. +-.-+...+...|.||
T Consensus 160 ~~---------------------p~~t~l~~~~~~Dlk----G~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 160 EN---------------------PAYSKLVMFVQPELR----GNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred CC---------------------CCceEEEEEEEeCCC----CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 21 146889998885433 3344433333 2222223666777665
No 32
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.57 E-value=0.1 Score=52.99 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=72.6
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 501 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~I 501 (648)
-...+|..- . ..++|+|.++.. +|...|. ++ .+ -+++||+.|+++|+|...|.+||...... + |
T Consensus 19 ~~~~gW~l~-~--~~~gI~Vy~k~~---~~~~~~~-~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~--~----v 82 (205)
T cd08874 19 QATAGWSYQ-C--LEKDVVIYYKVF---NGTYHGF-LG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKTA--R----I 82 (205)
T ss_pred hccCCcEEE-e--cCCCEEEEEecC---CCCcceE-EE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhhe--e----e
Confidence 456799543 2 368999999864 3344444 33 33 34999999999999999999999744321 1 2
Q ss_pred ccCCCCCceEEEEEeccCCC-----CCCceEEEEcccCCCCceEEE-EeeccccchhhhhcCCCC-C--CccccCCCcEE
Q 006356 502 AKGQDHGNCVSLLRASAINA-----NQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDS-A--YVALLPSGFAI 572 (648)
Q Consensus 502 a~G~~~gN~VSllr~~~~~~-----~~~~mliLQesctd~sgS~vV-yAPVD~~~m~~vm~G~Ds-s--~v~LLPSGF~I 572 (648)
.+-.+.. ..+++.....+ ...++.+|+ ++....+..++ ---|+-+.+ ...+ . -+..+++||.|
T Consensus 83 l~~~~~d--~~i~y~~~~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~-----P~~~~~~VR~~~~~~gw~i 154 (205)
T cd08874 83 HKTFTED--ICLVYLVHETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSM-----PEPGRSLVRGEILPSAWIL 154 (205)
T ss_pred eeecCCC--eEEEEEEecCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccC-----CCCCCCeEEeeeEeeeEEE
Confidence 1212322 24444331111 456787777 45444444433 111221110 0001 1 23467888888
Q ss_pred ccC
Q 006356 573 VPD 575 (648)
Q Consensus 573 lPd 575 (648)
-|.
T Consensus 155 ~P~ 157 (205)
T cd08874 155 EPV 157 (205)
T ss_pred EEC
Confidence 883
No 33
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.36 E-value=1.3 Score=43.26 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=46.1
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 489 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~L 489 (648)
|++.+|... . ..++|+|..++.. + +.+..-.++..++.||+.+|+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~---~---~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVE---G---SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECC---C---CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 445559977 3 3579999998863 2 22456677888999999999999999999999963
No 34
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.32 E-value=1.1 Score=44.86 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=75.2
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhh-hccccchhhhhhcCCCCcceeeecc
Q 006356 424 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSNGGPMQEMAHIA 502 (648)
Q Consensus 424 ~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FL-Rde~~R~eWd~Ls~G~~vqe~~~Ia 502 (648)
..+|... .. ..++|.|.+|+. +| .|-+ .++...+++||..||++| .|...|.+||..... .+.+-++
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~---~~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNV---PG--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEc---CC--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 4489976 22 223899999986 33 2323 455567799999999865 588999999975432 3344444
Q ss_pred cCCCCCceEEEEEeccC--C-CCCCceEEEEcccCCCCceEEE-EeeccccchhhhhcCCCCCC--ccccCCCcEEccCC
Q 006356 503 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 576 (648)
Q Consensus 503 ~G~~~gN~VSllr~~~~--~-~~~~~mliLQesctd~sgS~vV-yAPVD~~~m~~vm~G~Dss~--v~LLPSGF~IlPdg 576 (648)
+....|--...... . -+..+...++- +....+.++| ...|+-+.+ ...+.+ +..+++||.|-|.+
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~-~~~~~~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRH-WGIRENCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEE-EEecCCeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 22334433222221 1 23456666665 3333355544 344443321 122333 45788999998854
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.06 E-value=0.052 Score=46.67 Aligned_cols=47 Identities=36% Similarity=0.579 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH----HHhhhhccc
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 76 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~----r~~~~~~k~ 76 (648)
....|+.||++|+.+|..+. -+-..|+.||.+||+|.. |+.++++|+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~---------------------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELK---------------------EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999998 256679999999999976 666666553
No 36
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.95 E-value=1.6 Score=43.91 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=79.9
Q ss_pred HHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhc
Q 006356 411 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 490 (648)
Q Consensus 411 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls 490 (648)
++..|...+.. .++|... . ..++|+|.+|+.. .+.+++.+.-..++.|+..+.++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~------~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEP------DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCC------CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 34556666655 6789987 3 3579999999863 2348899999999999999999999999999999742
Q ss_pred CCCCcceeeecccCCCCCceEEEEEeccCC-CCCCceEEEEcccC--CCCceEEEEe
Q 006356 491 NGGPMQEMAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGSLVVYA 544 (648)
Q Consensus 491 ~G~~vqe~~~Ia~G~~~gN~VSllr~~~~~-~~~~~mliLQesct--d~sgS~vVyA 544 (648)
. ..+.+..+ +..+.|..++++..= -+..++++....+. +..|+.+|+.
T Consensus 79 ~--~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 I--RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred e--eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 2 12233333 345678888766321 23356665544343 3677776655
No 37
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.51 E-value=5.1 Score=39.96 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhc--ccc
Q 006356 405 LKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ERL 482 (648)
Q Consensus 405 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRd--e~~ 482 (648)
=++.|.+..-|... ++|... . ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~~------~~W~~~-~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYINDT------DGWKVL-K--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcCc------CCcEEE-E--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 34555555555422 789987 3 3478999998643211 2 2346777789999999999999 999
Q ss_pred chhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC--C-CCCCceEEEEcccCCCCceEEEE-eeccccchhhhhcCC
Q 006356 483 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGG 558 (648)
Q Consensus 483 R~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~--~-~~~~~mliLQesctd~sgS~vVy-APVD~~~m~~vm~G~ 558 (648)
|.+||... ...+.+.+| ++.+.|........ . -+..+...+|-......|++++. .-|+-+.+ ..
T Consensus 73 r~~Wd~~~--~~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSL--KHYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred cccccccc--cceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 99999533 234555555 33444433322111 1 23456777763222233556544 23333321 11
Q ss_pred CCCCc--cccCCCcEEccC
Q 006356 559 DSAYV--ALLPSGFAIVPD 575 (648)
Q Consensus 559 Dss~v--~LLPSGF~IlPd 575 (648)
.+.+| ..+++||.|-|.
T Consensus 142 ~~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCCcEEEEeecCEEEEEEC
Confidence 23333 467888888873
No 38
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.50 E-value=3 Score=42.27 Aligned_cols=130 Identities=14% Similarity=0.159 Sum_probs=77.8
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHH-hhhccccchhhhhhcCCCCcceeeecc
Q 006356 424 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEWDILSNGGPMQEMAHIA 502 (648)
Q Consensus 424 ~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~-FLRde~~R~eWd~Ls~G~~vqe~~~Ia 502 (648)
.++|..- . ...++|+|.+++.. +. | .+-+.-.-+++||+.||+ .|.|...|.+||.-. ..++.+.+|
T Consensus 24 ~~~W~l~-~-~~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~--~~~~vi~~~- 91 (209)
T cd08906 24 EENWKFE-K-NNDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV--SACQVLQRV- 91 (209)
T ss_pred ccCCEEE-E-ecCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccc--hhhhheeec-
Confidence 3589954 2 22478999997652 21 2 344777778999999985 789999999999522 123344444
Q ss_pred cCCCCCceEEEEEeccC---C-CCCCceEEEEcccCCCCceEEEEeeccccchhhhhcCCCCCCc--cccCCCcEEcc
Q 006356 503 KGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVP 574 (648)
Q Consensus 503 ~G~~~gN~VSllr~~~~---~-~~~~~mliLQesctd~sgS~vVyAPVD~~~m~~vm~G~Dss~v--~LLPSGF~IlP 574 (648)
++.+.|. ..+... + -+..++.+++-.+-+..+..++...++.+.+ ...+.+| ...++||.|.|
T Consensus 92 ---~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 ---DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred ---cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 2334433 232221 1 2456788877544455554445555544432 2234454 35899999998
No 39
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.45 E-value=0.85 Score=44.73 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=80.8
Q ss_pred CCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhH-HHHhhhccccchhhhhhcCCCCcceeeecc
Q 006356 424 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILSNGGPMQEMAHIA 502 (648)
Q Consensus 424 ~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~-vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia 502 (648)
.++|... .+ +.+++.+..|.. +| + ..+-..+....++.+++. +.++|.|.+.|.+||..... ++.+-.+.
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~---~~-~-~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILS---PG-R-SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEcc---CC-C-CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 4679977 33 234454545543 22 0 136688899999988875 66899999999999975432 33344442
Q ss_pred cCCCCCceEEEEEeccC--CCCCCceEEEEcccCCCCceEEEEe-eccccchhhhhcCCCCCCc--cccCCCcEEccCC
Q 006356 503 KGQDHGNCVSLLRASAI--NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 576 (648)
Q Consensus 503 ~G~~~gN~VSllr~~~~--~~~~~~mliLQesctd~sgS~vVyA-PVD~~~m~~vm~G~Dss~v--~LLPSGF~IlPdg 576 (648)
.++.|-....+.. --...+..++.-...+..|+++|-. -++-+.. ...+.+| .++++||.|-|.+
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECC
Confidence 2344444333321 1233677777765556677766644 5554431 1123344 5899999999944
No 40
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.22 E-value=0.97 Score=42.95 Aligned_cols=131 Identities=20% Similarity=0.328 Sum_probs=80.2
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 006356 425 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 504 (648)
Q Consensus 425 ~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia~G 504 (648)
++|..+. . .++|+|..++..+ . .+...++..-++.|+..|+++|.|...|.+||..... ...+..+.
T Consensus 15 ~~W~~~~-~--~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~--~~vl~~~~-- 81 (193)
T cd00177 15 EGWKLVK-E--KDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEE--FEVIEEID-- 81 (193)
T ss_pred CCeEEEE-E--CCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceE--EEEEEEeC--
Confidence 5899883 2 4589998887632 1 2345667777899999999999999999999953222 22333332
Q ss_pred CCCCceEEEEEeccCC-CCCCceEEEEcccCCCCc-eEEEEeeccccchhhhhcCCCCCCc--cccCCCcEEccC
Q 006356 505 QDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAG-SLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPD 575 (648)
Q Consensus 505 ~~~gN~VSllr~~~~~-~~~~~mliLQesctd~sg-S~vVyAPVD~~~m~~vm~G~Dss~v--~LLPSGF~IlPd 575 (648)
.+..|.....+..- ....++++++....+..| -+++..++|.+.. ...++.| .++++||.|-|.
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~ 149 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPL 149 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEEC
Confidence 22444444443322 344578888765545534 5666667776521 1112333 366888888874
No 41
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.18 E-value=1.7 Score=43.84 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=97.3
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhcc--ccchhhhhhcCCCCcceeee
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNGGPMQEMAH 500 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde--~~R~eWd~Ls~G~~vqe~~~ 500 (648)
..++|... . ..++|+|.+|++...+|. + .++-.-+|++++.||+||.|. ..|.+||..+.. ++.+-+
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~ 88 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEA 88 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEE
Confidence 56789977 3 347999999998654553 2 455666799999999999854 478999975432 333444
Q ss_pred cccCCCCCceEEEEEeccC---CCCCCceEEEEcccCCCCceEEEEe-eccccchhhhhcCCCCCCcc--ccCCCcEEcc
Q 006356 501 IAKGQDHGNCVSLLRASAI---NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYVA--LLPSGFAIVP 574 (648)
Q Consensus 501 Ia~G~~~gN~VSllr~~~~---~~~~~~mliLQesctd~sgS~vVyA-PVD~~~m~~vm~G~Dss~v~--LLPSGF~IlP 574 (648)
| +....|..++.... --+..++.+++-.-....|.+++.. -++-+.+ ...+.+|- .-|+|+.+.|
T Consensus 89 i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~ 159 (208)
T cd08903 89 I----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEP 159 (208)
T ss_pred e----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 4 23334433322111 1334677776653334556665544 2222111 11233332 3456777665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh-HhhhhhHHHHHHHHhhc
Q 006356 575 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 645 (648)
Q Consensus 575 dg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t-V~~li~~TVq~Ik~AL~ 645 (648)
-.. ..++|.+|.=+|+ -|.-.|...-|.+ +...+-.|.+.++.+++
T Consensus 160 ~~~---------------------~~~~t~v~~~~~~----DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 160 VPG---------------------EPDKTQLVSFFQT----DLSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCC---------------------CCCceEEEEEEEe----ccCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 110 0135666655554 3444444444433 22344457777777764
No 42
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.17 E-value=0.063 Score=56.92 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHH
Q 006356 11 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 68 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (648)
..|++||++||.||..+++++.. ..+.|+.||+|||+.|+-
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~-----------------~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEI-----------------LTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhcC
Confidence 45899999999999999777732 234499999999998753
No 43
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.94 E-value=1.9 Score=43.40 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=92.8
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeec-ccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 501 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wL-Pvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~I 501 (648)
-..+|.... ..++|+|-.|... |. |+. --++...+ ++|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~~---~~~~i~Vy~r~~~---~s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPFI---EKKDMLVWRREHP---GT--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEEE---EcCceEEEEeccC---CC--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 345699772 3578999888763 22 223 45554555 699999999999999999999643 333333
Q ss_pred ccCCCCCceEEEEEeccC-CCCCCceEEEEcccCCCC-ceEEEEe-eccccchhhhhcCCCCCC--ccccCCCcEEccCC
Q 006356 502 AKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDAA-GSLVVYA-PVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 576 (648)
Q Consensus 502 a~G~~~gN~VSllr~~~~-~~~~~~mliLQesctd~s-gS~vVyA-PVD~~~m~~vm~G~Dss~--v~LLPSGF~IlPdg 576 (648)
.+..+.++.|--.+.... --...+..+-+-...|.. |.++|.. -|+-+.. ..-+.+ |..+.+|+.|-|.+
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~ 159 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHK 159 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCC
Confidence 332233444433433321 123345544443234443 3434432 1221110 011112 44567777777743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh-HhhhhhHHHHHHHHhhc
Q 006356 577 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 645 (648)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t-V~~li~~TVq~Ik~AL~ 645 (648)
.. ..+|+-++.-++ ..|...+..--|.. +...+-.++++++.|..
T Consensus 160 ~~--------------------~~~~~~~~~~~~----~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 160 SF--------------------DEPGFEFVLTYF----DNPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CC--------------------CCCCeEEEEEEE----eCCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 11 114565654333 24444443322211 33344458888888763
No 44
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=93.41 E-value=0.91 Score=45.58 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=63.8
Q ss_pred CCceeccCCCCCCc----eEEEEecCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceee
Q 006356 425 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMA 499 (648)
Q Consensus 425 ~~W~~l~~~~~~~d----Vrv~~rks~~~~g~p~G~VLsA~tS~wLP-vpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~ 499 (648)
++|... .+ .++ |+|-.|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.-
T Consensus 22 ~~W~~~-~~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~ 87 (209)
T cd08870 22 QAWQQV-MD--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHE 87 (209)
T ss_pred CcceEh-hh--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEE
Confidence 689987 33 344 888777652 22 2 33466677786 89999999999999999999643 3333
Q ss_pred ecccCCCCCceEEEEEeccCC-CCCCceEEEEcccCCCCceEEEEe
Q 006356 500 HIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA 544 (648)
Q Consensus 500 ~Ia~G~~~gN~VSllr~~~~~-~~~~~mliLQesctd~sgS~vVyA 544 (648)
-|....+.++.|--......= -+..+..+.+..+.+.-+++++..
T Consensus 88 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 88 TLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333322324444333333211 233456655555566566666654
No 45
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=93.38 E-value=0.83 Score=47.53 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=49.6
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 501 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~I 501 (648)
-..++|..- . ..++|+|.++.+ ..+++-..=.-+++|++.||++|.|...|.|||. +...++.+.+|
T Consensus 52 ~~~~~W~l~-~--~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 52 AAKSDWTVA-S--STTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred cccCCCEEE-E--cCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 347899865 2 468999999873 2245555555589999999999999999999997 33445555555
No 46
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=93.27 E-value=0.66 Score=48.34 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=46.9
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 489 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~L 489 (648)
...++|..- . ..++|+|-++. |. -+++-+.-+-+++|++.+|++|.|...|.+||..
T Consensus 53 a~~~~W~l~-~--dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT-S--TVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE-E--ccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHh
Confidence 457899965 2 46899999984 22 2578888888899999999999999999999974
No 47
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=92.98 E-value=4.9 Score=41.00 Aligned_cols=165 Identities=19% Similarity=0.277 Sum_probs=97.4
Q ss_pred CceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccCC
Q 006356 426 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQ 505 (648)
Q Consensus 426 ~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia~G~ 505 (648)
+|..+. ..+.+.+..+|. .+|.| +.--+.++=+|.+|..|...|-|+ |.+||.-.- ..+.+..+
T Consensus 28 ~w~~~~---~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSYS---TSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCcccC---CCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 788772 367899999986 35555 667788888998888888777775 999996321 12333333
Q ss_pred CCCceEEEEEeccCCCCC-CceEEEEcccC-CCCceEEEEee-ccccchhhhhcCCCCCCcc-------ccCCCcEEccC
Q 006356 506 DHGNCVSLLRASAINANQ-SSMLILQETCT-DAAGSLVVYAP-VDIPAMHVVMNGGDSAYVA-------LLPSGFAIVPD 575 (648)
Q Consensus 506 ~~gN~VSllr~~~~~~~~-~~mliLQesct-d~sgS~vVyAP-VD~~~m~~vm~G~Dss~v~-------LLPSGF~IlPd 575 (648)
++.+.|-=..++..-+-. .++.+++-..+ ..-|++++... |+ ++++| .+-+|+.|-|.
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~------------h~~~P~~~VR~~~~~~~w~i~P~ 159 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVD------------HDRAPVAGVRVNVLLSRYLIEPC 159 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecC------------cccCCcCceEEEEEeeEEEEEEC
Confidence 233333333333322223 45656543223 34677777665 44 34444 23333333331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHhHhhhhhHHHHHHHHhhc
Q 006356 576 GPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 645 (648)
Q Consensus 576 g~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~tV~~li~~TVq~Ik~AL~ 645 (648)
.+|+|-+|--.|+= |...+..=-+-....|++.-+.||+..+.
T Consensus 160 -----------------------g~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 160 -----------------------GSGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred -----------------------CCCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 12578888655543 34444444555678899999999998764
No 48
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=92.23 E-value=0.16 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (648)
.||..||+||++||.||..||..+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHH
Confidence 389999999999999999998766
No 49
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=91.76 E-value=0.27 Score=51.31 Aligned_cols=41 Identities=34% Similarity=0.496 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 67 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (648)
+...|++||++|++||..++..+ .+.+.|+.||.+||+-|+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 34567888888888888877766 244568899999988764
No 50
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=91.15 E-value=4.8 Score=38.38 Aligned_cols=141 Identities=10% Similarity=0.118 Sum_probs=74.3
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 291 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql 291 (648)
..+-+|.-.+..+-+++-|..+|-+.||. ++.++|++.|..| . .....++...+ ..+.-|.=|.+ +
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~----~~~~~~l~~~~~~----~--~~r~~i~~~~~--g~~~~w~s~~~--~ 69 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLFSE----YAEAEVLEEDGDT----V--RFRLTMHPDAN--GTVWSWVSERT--L 69 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhccc----eEEEEEEEecCCe----E--EEEEEEEeccC--CEEEEEEEEEE--e
Confidence 34566777899999999999999999999 5777788854422 1 11122233332 12222323433 2
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHH
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 371 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWla 371 (648)
....|-|.=..... .+ ...+=--..+++.++| |+|++..+++...-. .+.-+++....--.-..=++
T Consensus 70 ~~~~~~i~~~~~~~---~p-------~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 136 (146)
T cd08860 70 DPVNRTVRARRVET---GP-------FAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMA 136 (146)
T ss_pred cCCCcEEEEEEecC---CC-------cceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHH
Confidence 33344333112211 11 1122223446788887 999999998865211 22222232222222333466
Q ss_pred HHHHHHHH
Q 006356 372 TLQRQCEC 379 (648)
Q Consensus 372 tLqRqcer 379 (648)
+|.+.+|+
T Consensus 137 ~Lk~~aE~ 144 (146)
T cd08860 137 RIKKKIEA 144 (146)
T ss_pred HHHHHhhh
Confidence 66666665
No 51
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.13 E-value=7.3 Score=38.02 Aligned_cols=150 Identities=20% Similarity=0.329 Sum_probs=85.9
Q ss_pred HHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhh
Q 006356 407 LAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 407 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
|+++....|.. ......++|... .+. ++..+.+++.. ++.+ ..+...++..-++.++..+|..|.+... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~-~~~--~~~~~~~~~~~--~~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLY-KDK--KNGDVYYKKVS--PSDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEE-EEE--TTTCEEEEEEE--CSSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEe-Ecc--CCCeEEEEEeC--cccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 45555556653 335677899988 322 33333344432 1111 1355788889999888877777777444 99
Q ss_pred hhhcCCCCcceeeecccCCCCCceEEEEEeccCC---CCCCceEEEEcccCCCCceEEEE-eeccccchhhhhcCCCCCC
Q 006356 487 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAY 562 (648)
Q Consensus 487 d~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~~---~~~~~mliLQesctd~sgS~vVy-APVD~~~m~~vm~G~Dss~ 562 (648)
|.... ..+.+..+ +++..|.....+..- -...+..+++-...+..|++++. ..||.+..... .+..
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 97543 23344444 233555555444322 22356777775444566765554 57877753221 2344
Q ss_pred cc--ccCCCcEEccC
Q 006356 563 VA--LLPSGFAIVPD 575 (648)
Q Consensus 563 v~--LLPSGF~IlPd 575 (648)
|- +++|||.|-|.
T Consensus 143 VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 143 VRAEILISGWVIRPL 157 (206)
T ss_dssp EEEEEESEEEEEEEE
T ss_pred ceeeeeeEeEEEEEc
Confidence 44 89999999984
No 52
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=90.63 E-value=13 Score=37.92 Aligned_cols=172 Identities=19% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh-cCCCCcceeeeccc
Q 006356 425 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL-SNGGPMQEMAHIAK 503 (648)
Q Consensus 425 ~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~L-s~G~~vqe~~~Ia~ 503 (648)
.+|..+. ..+++.+..+|.. +|.| +=--++++=+|.||..|+..+-+ .|.+||.- ..+. .+-+|
T Consensus 27 k~w~~~~---~~~~~e~~ykK~~--d~~~---lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~---~ie~l-- 91 (205)
T cd08909 27 KGWISCS---SSDNTELAYKKVG--DGNP---LRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWK---VVETL-- 91 (205)
T ss_pred cCCcccC---CcCCeEEEEecCC--CCCc---eEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeE---EEEEe--
Confidence 4788772 3578999999864 4544 33445688889666666555544 69999952 2222 22222
Q ss_pred CCCCCceEEEEEeccCCCC-CCceEEEEccc-CC-CCceEEE-EeeccccchhhhhcCCCCCCccccCCCcEEccCCCCC
Q 006356 504 GQDHGNCVSLLRASAINAN-QSSMLILQETC-TD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDS 579 (648)
Q Consensus 504 G~~~gN~VSllr~~~~~~~-~~~mliLQesc-td-~sgS~vV-yAPVD~~~m~~vm~G~Dss~v~LLPSGF~IlPdg~~~ 579 (648)
+..+.|=-.+++...+- ..+..+++ ++ +| ..|++++ +..|+-+.-.. .|+ --+.++=+||.|-|.|.
T Consensus 92 --d~~tdi~~y~~~~~~P~~~RD~v~~R-~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~--VRa~~~~~gylI~P~~~-- 162 (205)
T cd08909 92 --DKQTEVYQYVLNCMAPHPSRDFVVLR-SWRTDLPKGACSLVSVSVEHEEAPL--LGG--VRAVVLDSQYLIEPCGS-- 162 (205)
T ss_pred --CCCcEEEEEEeecCCCCCCCEEEEEE-EEEEeCCCCcEEEEEecCCCCcCCC--CCc--EEEEEEcCcEEEEECCC--
Confidence 22244444444433222 34555555 44 34 5777644 33344332100 011 12345668888887332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHhHhhhhhHHHHHHHHhhc
Q 006356 580 RGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 645 (648)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~tV~~li~~TVq~Ik~AL~ 645 (648)
|+|.||-=-|+=.... +..=-+..+..|++.-+.||+..+.
T Consensus 163 ---------------------g~trvt~i~~vDpkG~----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 ---------------------GKSRLTHICRVDLKGH----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred ---------------------CCEEEEEEEEecCCCC----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3566665444433322 2222444578888889999998764
No 53
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=90.32 E-value=4 Score=36.78 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=63.7
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecC
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 293 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~ 293 (648)
+-.+...+.++.+.|.|.+.|.+-+|.+. .+++++. |.... +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 34567788999999999999999999854 4555542 22221 222222 332 2233234455543334
Q ss_pred ceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeeccccccccccccc
Q 006356 294 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 358 (648)
Q Consensus 294 G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 358 (648)
..+++.-..-.. .. + ...=--+-+++. +|.++|+|.-+++..- .+..+..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 554443221110 00 1 011112346777 6679999999999653 3444444444
No 54
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.20 E-value=5.3 Score=36.45 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=72.3
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeeccccccccee-eEEEEeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQ 290 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re-~~fLRyckq 290 (648)
|++-.|..++..+-+++.|.+.|.+.+|.+ +..+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 345667778999999999999999999994 5666675421 121 1 1111 111 222333322
Q ss_pred ecCceEEEEEEecccccCCCCCCCccccccc----C--Cc-eeEeecCC-CceEEEEEEeeeecccccccccccccccch
Q 006356 291 HAEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SG-CVVQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGM 362 (648)
Q Consensus 291 l~~G~WaVvDvSld~~~~~~~~~~~~r~~rl----P--SG-clIq~~~n-G~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 362 (648)
++.++.-.. +.+ ...+++.. + .| .-+++.++ |.++|+|--|++... .+ +-++++.-+
T Consensus 63 ------v~~~~~~~~--~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~---p~~l~~~~~ 127 (144)
T cd08866 63 ------VVLELRERE--EFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FA---PVFLVEFVL 127 (144)
T ss_pred ------EEEEEEEec--CCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CC---CHHHHHHHH
Confidence 111111000 000 01111110 0 12 23578887 789999987777553 23 336665555
Q ss_pred hHHHHHHHHHHHHHHH
Q 006356 363 GFGAQRWVATLQRQCE 378 (648)
Q Consensus 363 afGA~RWlatLqRqce 378 (648)
-=+..+-++.|.++||
T Consensus 128 ~~~~~~~l~~lr~~ae 143 (144)
T cd08866 128 RQDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5566777788877776
No 55
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=89.89 E-value=2.3 Score=43.28 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=69.9
Q ss_pred ceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEe-eeeecC-ceEEEEEEecccccCCCCCCCcccccccC
Q 006356 245 TATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRLP 322 (648)
Q Consensus 245 a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRy-ckql~~-G~WaVvDvSld~~~~~~~~~~~~r~~rlP 322 (648)
++.+++...+. ++..++.|.+..+|-| +..|+|..+.. +.+.+. ..++|+..+++...-....+.++|.+ -=
T Consensus 77 ~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~ 150 (208)
T cd08864 77 LEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YA 150 (208)
T ss_pred eEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EE
Confidence 45555544222 3356888899999999 89999999999 666652 67899999987432110112578887 78
Q ss_pred CceeEeecCC---CceEEEEEEeeeecccc-ccc
Q 006356 323 SGCVVQDMPN---GYSKVTWVEHAEYDESQ-VHQ 352 (648)
Q Consensus 323 SGclIq~~~n---G~skVtwVeH~e~d~~~-vh~ 352 (648)
||..|+..|. +-.+|+|+==...|+.. ||.
T Consensus 151 SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 151 SVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 9999998885 47899999833344442 543
No 56
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.71 E-value=0.99 Score=39.59 Aligned_cols=61 Identities=30% Similarity=0.433 Sum_probs=45.1
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH----HHhhhhccc
Q 006356 2 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 76 (648)
Q Consensus 2 K~q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~----r~~~~~~k~ 76 (648)
|.|+-=..-.+|+-|.|.|+.+|..+.+....+. ..-..|+.||.+||+|.. |++++++|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~--------------~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ--------------HQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445677899999999999999998764331 112349999999999975 777777663
No 57
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=88.52 E-value=4.4 Score=37.03 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=76.6
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeec
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 292 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~ 292 (648)
.+..|...+..+.+++-|.+.|.+.+|.+ +..++++.+. ++ ..+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 34566677889999999999999999994 5566666433 12 22333333332 244443 333321 1
Q ss_pred CceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHH
Q 006356 293 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 372 (648)
Q Consensus 293 ~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlat 372 (648)
+. .+ -=.++++ + + +.+=--..+++.++|.|+|+|.-|++..-.-...|..+++ .=-+++-+.+
T Consensus 68 ~~-~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~----~~~~~~~l~~ 130 (138)
T cd07813 68 PE-SI-EAELVDG----P----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVF----DEVAKKMVDA 130 (138)
T ss_pred CC-EE-EEEecCC----C----h---hhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHH----HHHHHHHHHH
Confidence 33 22 1112222 1 1 1122245578999999999999999986332223333333 2235667777
Q ss_pred HHHHHHH
Q 006356 373 LQRQCEC 379 (648)
Q Consensus 373 LqRqcer 379 (648)
+.+.|++
T Consensus 131 f~~~~~~ 137 (138)
T cd07813 131 FEKRAKQ 137 (138)
T ss_pred HHHHHhh
Confidence 7777664
No 58
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=88.01 E-value=3.8 Score=42.33 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=78.1
Q ss_pred EechhhHHHHhCCh---hhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCc
Q 006356 218 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 294 (648)
Q Consensus 218 ~m~~~~LVe~lmD~---~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G 294 (648)
.+.|..+-+.|+|. .+|=.+ |.+-.|++..+. .|+ +++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 35688999999995 599887 444455555441 232 88999999999885 5999999887777777
Q ss_pred eEEEEEEecccccCCCCCCCcccccccCCceeEe-----ecCCC-ceEEEEEEe
Q 006356 295 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNG-YSKVTWVEH 342 (648)
Q Consensus 295 ~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq-----~~~nG-~skVtwVeH 342 (648)
...||-.|+....- |.....+|..-.=||.+|| +-++| .|-++|.+|
T Consensus 131 ~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 78888777763211 1111357888889999999 55555 345555544
No 59
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=87.33 E-value=0.68 Score=50.56 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 67 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (648)
.|++||++||.||..|++.+. ..+.++.||++|++-++
T Consensus 61 ~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 61 VLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 467777777777777777662 23446788888886554
No 60
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=87.15 E-value=0.91 Score=45.79 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=60.5
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeee
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 500 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLP-vpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~ 500 (648)
-.+.+|... . ..++|+|-.|... |. .+.--++...++ ++|+.++++|.|...|.+||...- |+..
T Consensus 22 ~~~~~W~l~-~--~~~~i~Vy~r~~~---~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~ 87 (207)
T cd08910 22 LDGAAWELL-V--ESSGISIYRLLDE---QS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYE 87 (207)
T ss_pred CCCCCeEEE-E--ecCCeEEEEeccC---CC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hhee
Confidence 444679987 3 3578999988752 22 244677788889 999999999999999999997532 2222
Q ss_pred cccCCCCCceEEEEEeccCC-CCCCceEEEEc
Q 006356 501 IAKGQDHGNCVSLLRASAIN-ANQSSMLILQE 531 (648)
Q Consensus 501 Ia~G~~~gN~VSllr~~~~~-~~~~~mliLQe 531 (648)
. .++++.|--.+.+..= -+..++.+++.
T Consensus 88 ~---~~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K---ECDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e---cCCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1335555555444221 34456666664
No 61
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=86.95 E-value=6.4 Score=40.99 Aligned_cols=187 Identities=19% Similarity=0.182 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhccccccCCCCceeccCCCCC-----Cc-eEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhh
Q 006356 404 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD-----ED-VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL 477 (648)
Q Consensus 404 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~-----~d-Vrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FL 477 (648)
++.||..-+.-|- .+.-.+.--|.+. .+.+. |. .|++.+.. .+..+...+..+-++-...+.|..|.++|
T Consensus 4 ~~~lA~~am~Ell-~~a~~~~plWi~~-~~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 4 LLELAEEAMDELL-KLAQGGEPLWIKS-PGMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred HHHHHHHHHHHHH-HHhccCCCCceec-CCCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 7889999999998 4445557789987 34321 22 22222221 12122345778889999999999999999
Q ss_pred hccccchh-hhhhcCCCCcceeeecccCCCCCceEEEEEeccCC----CCCCceEEEEcccCCCCceEEEEeeccccchh
Q 006356 478 RDERLRSE-WDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN----ANQSSMLILQETCTDAAGSLVVYAPVDIPAMH 552 (648)
Q Consensus 478 Rde~~R~e-Wd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~~----~~~~~mliLQesctd~sgS~vVyAPVD~~~m~ 552 (648)
.|..++.+ .+-...-..+-++..=..|..++..+.|+..+-.- ..-.+..+|.-|+--.-|+.+| ||.+.=
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~V---vdvSld- 155 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAV---VDVSID- 155 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEE---EEEeec-
Confidence 99555555 33233322222332222233456678887765221 1236899999765667888766 344321
Q ss_pred hhhcCCCCC---CccccCCCcEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCcccc
Q 006356 553 VVMNGGDSA---YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKL 621 (648)
Q Consensus 553 ~vm~G~Dss---~v~LLPSGF~IlPdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l 621 (648)
...+...+. .--.+||||-|=|- .+|+|-+|.-=++-++..|.-.+
T Consensus 156 ~~~~~p~~~~~~r~~~~PSGcLIq~~-----------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 156 GVQTAPPPASFVRCRRLPSGCLIQDM-----------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred ccccCCCCCCccEEEEecCcEEEEEC-----------------------CCCceEEEEEEEEeccCCccccc
Confidence 000101122 23489999999771 12568888777766665443333
No 62
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=85.60 E-value=35 Score=34.50 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhh-cccc
Q 006356 404 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DERL 482 (648)
Q Consensus 404 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLR-de~~ 482 (648)
-.++++.....|-.-. ...++|... . .+.++++|.++.. |+. | --.+.-.-+|+|++.||++|. |-..
T Consensus 6 y~~~~~~~~~~~~~~~--~~~~~W~~~-~-~~~~gi~v~s~~~---~~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e~ 74 (209)
T cd08905 6 YIKQGEEALQKSLSIL--QDQEGWKTE-I-VAENGDKVLSKVV---PDI--G--KVFRLEVVVDQPLDNLYSELVDRMEQ 74 (209)
T ss_pred HHHHHHHHHHHHHHHh--ccccCCEEE-E-ecCCCCEEEEEEc---CCC--C--cEEEEEEEecCCHHHHHHHHHhchhh
Confidence 3445555555555444 245689976 2 2356788888665 222 2 334556678999999996666 5689
Q ss_pred chhhhhhc
Q 006356 483 RSEWDILS 490 (648)
Q Consensus 483 R~eWd~Ls 490 (648)
+.+|+..+
T Consensus 75 ~~~W~~~~ 82 (209)
T cd08905 75 MGEWNPNV 82 (209)
T ss_pred hceecccc
Confidence 99999643
No 63
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=84.54 E-value=18 Score=32.31 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=62.3
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeec
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 292 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~ 292 (648)
.+-.|...+.++.+.|.|.+.|.+.+|.+ +.++++..+.. |.-...+ +.+. ..+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC-
Confidence 45667788999999999999999999984 55666654432 2222222 2221 2244555556665532
Q ss_pred Cce--EEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecc
Q 006356 293 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDE 347 (648)
Q Consensus 293 ~G~--WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~ 347 (648)
... |-..+. .. +.... .-.-+++.++ .|+|||.-+++..-
T Consensus 73 ~~~i~~~~~~~-------~~----~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 73 AGSVSWTLVEG-------EG----NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred CCcEEEEEecc-------cc----eeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 222 222111 01 11111 1255778877 59999999998743
No 64
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=84.24 E-value=11 Score=34.37 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.3
Q ss_pred eeeEEechhhHHHHhCChhhhhhhccc
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPC 240 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~ 240 (648)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456677889999999999999998787
No 65
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=84.04 E-value=1.7 Score=45.28 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=43.4
Q ss_pred cCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhh
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 489 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~L 489 (648)
...++|..- . ..++|+|-++.. +. .++-+.-+-+++|++.||++|.|...|.+||..
T Consensus 56 ~~~~~W~l~-~--~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLS-S--EKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEE-E--ccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhh
Confidence 456789965 3 358999999553 11 234456667899999999999999999999964
No 66
>PRK10724 hypothetical protein; Provisional
Probab=82.25 E-value=31 Score=33.62 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=82.2
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 291 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql 291 (648)
+.+.+|.-.+.++.+.+.|.++|-+.+|. |+..+|+.... ++ +.+++.+--.-+ ++-+.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~----~~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPG----CTGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcc----cCeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 45678888999999999999999999888 56667776543 22 467776644333 33333333332
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHH
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 371 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWla 371 (648)
.++ .+.+ ..++ ++ .+.+=.-.-+++.++|.|+|+.--+.|+... ||.+++....---|++.+.
T Consensus 83 ~~~-~I~~-~~~~----Gp-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~----l~~~~~~~~~~~~~~~mv~ 145 (158)
T PRK10724 83 SNQ-SILM-QLVD----GP-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK----LIELAFGRVFKELASNMVQ 145 (158)
T ss_pred CCC-EEEE-EecC----CC-------hhhccceEEEEECCCCCEEEEEEEEEEEchH----HHHHHHHHHHHHHHHHHHH
Confidence 333 3222 1222 12 2334444456788877899999888886543 3334443333334566776
Q ss_pred HHHHHHHHH
Q 006356 372 TLQRQCECL 380 (648)
Q Consensus 372 tLqRqcerl 380 (648)
+..+-|+.+
T Consensus 146 AF~~Ra~~~ 154 (158)
T PRK10724 146 AFTVRAKEV 154 (158)
T ss_pred HHHHHHHHH
Confidence 665555554
No 67
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=81.52 E-value=2.5 Score=45.06 Aligned_cols=44 Identities=32% Similarity=0.330 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHH
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 68 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (648)
..+...+..||+.||+|+..+.+-. -+.++|+.||.|||+.++-
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~------------------~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL------------------EEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCC
Confidence 3466678888888888888887766 4678899999999998853
No 68
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.40 E-value=36 Score=30.42 Aligned_cols=134 Identities=9% Similarity=0.003 Sum_probs=69.4
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecC
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 293 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~ 293 (648)
+-.|...+..+-++|.|.+.|.+-+|.+ ..+++++. .+. ++.+-.|....+++ ..|++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~------~~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD------TRS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC------Cce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 3455667889999999999999999974 44555531 111 11112232344443 345544 334
Q ss_pred ceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHH
Q 006356 294 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 373 (648)
Q Consensus 294 G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatL 373 (648)
+..++.. ..++.. . .....+ +++.++|.++||+--|.+......-.++-+++....-=..+++|..|
T Consensus 67 ~~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07817 67 NERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRF 133 (139)
T ss_pred CCEEEEE-ECCCCC--C----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 4433222 222111 1 111112 46777778999999998876433223333444333222344445555
Q ss_pred HHHHH
Q 006356 374 QRQCE 378 (648)
Q Consensus 374 qRqce 378 (648)
.++.|
T Consensus 134 k~~aE 138 (139)
T cd07817 134 KQLVE 138 (139)
T ss_pred HHHhh
Confidence 44443
No 69
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=81.22 E-value=2.9 Score=42.76 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhc
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 490 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls 490 (648)
...+|..- .. .+|+.|..+++...+|.- - .+---++.-|+.|+||+.+..+|.+||-..
T Consensus 21 ~~~~Wkl~-k~--~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 21 LEEEWRVA-KK--SKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred cccCcEEE-Ee--CCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 67799966 33 489999999886545531 1 111122788899999999999999999754
No 70
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=80.65 E-value=4.6 Score=36.14 Aligned_cols=47 Identities=30% Similarity=0.506 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhh
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
.+-+||+.|+.|...||+.+-+ -.+.=+-.+||-||++|+.|+.++-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~---------------nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEH---------------NPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888732 3466678899999999999998764
No 71
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=78.04 E-value=30 Score=30.67 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=67.2
Q ss_pred eeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCc
Q 006356 215 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 294 (648)
Q Consensus 215 glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G 294 (648)
..|...+.++-+.|.|.+.|.+-+|.+ ..+++...+. ..|+...++.. .. +.+. -+|.. ++++
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~----~g----~~~~-~~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLK----DG----GTVR-ERLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeC----CC----CEEE-EEehh-cCcc
Confidence 456778889999999999999888863 4556655332 13443222211 00 1111 11111 1121
Q ss_pred eEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHH
Q 006356 295 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQ 374 (648)
Q Consensus 295 ~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLq 374 (648)
.-.|. ..+... +.+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..++.|.
T Consensus 70 ~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~ 136 (140)
T cd07821 70 ERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALK 136 (140)
T ss_pred CCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHH
Confidence 00111 111110 000 0111123557788887899999999887755 3334444433333444555565
Q ss_pred HHH
Q 006356 375 RQC 377 (648)
Q Consensus 375 Rqc 377 (648)
++|
T Consensus 137 ~~~ 139 (140)
T cd07821 137 AAL 139 (140)
T ss_pred Hhh
Confidence 554
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.34 E-value=2.2 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhh
Q 006356 51 EEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
+.++|..|-..|++|..++...+
T Consensus 110 ~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 110 ETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666655554443
No 73
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.12 E-value=5.5 Score=41.41 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=36.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 5 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
-.-.||-.|+.||+.|.+|-.+.++.++ .|+.||+||.++++++-.
T Consensus 146 E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 146 ELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhchh
Confidence 3445788888888888888888888773 499999999999887653
No 74
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=74.77 E-value=9.3 Score=39.59 Aligned_cols=98 Identities=14% Similarity=0.305 Sum_probs=60.9
Q ss_pred cccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEE-EEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcce
Q 006356 420 CASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQE 497 (648)
Q Consensus 420 ~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VL-sA~tS~wLP-vpp~~vf~FLRde~~R~eWd~Ls~G~~vqe 497 (648)
-+-..++|... . ..++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-... +..
T Consensus 21 ~~~~~~~W~l~-~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~~v 90 (235)
T cd08872 21 EDVGADGWQLF-A--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--FHV 90 (235)
T ss_pred ccCCCCCCEEE-E--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--eEE
Confidence 34455689977 3 35789999987632 2 3332 367777789 9999999999999999999973221 223
Q ss_pred eeecccCCCCCceEEEEEeccCC-CCCCceEEEEc
Q 006356 498 MAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQE 531 (648)
Q Consensus 498 ~~~Ia~G~~~gN~VSllr~~~~~-~~~~~mliLQe 531 (648)
+-++ ++.+.|--...+..= .++.++.++.-
T Consensus 91 ie~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~ 121 (235)
T cd08872 91 VETL----SQDTLIFHQTHKRVWPAAQRDALFVSH 121 (235)
T ss_pred EEec----CCCCEEEEEEccCCCCCCCcEEEEEEE
Confidence 3333 234443333332211 24567766654
No 75
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.68 E-value=2.6 Score=45.84 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
-|.||..||+||++||.|=.+|.+.++
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 488999999999999999999988776
No 76
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=74.68 E-value=60 Score=28.62 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=68.3
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecC
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 293 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~ 293 (648)
+..|...+.++-+.|-|.++|.+-.|.+ ..+++++.+..+ .|+.-.+...+ . +.+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~~--~g~~~~~~~~~---~---g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPVG--VGTRYHQVRKF---L---GRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCCc--CccEEEEEEEe---c---CceEEEEEEEEEecCC
Confidence 4456677889999999999999999985 456666544322 34332222221 0 1111122344432222
Q ss_pred ceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHH
Q 006356 294 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 373 (648)
Q Consensus 294 G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatL 373 (648)
..+.. .. .. ++. . +. .=+-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|
T Consensus 72 ~~~~~-~~--~~---~~~-~-~~------~~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (140)
T cd08865 72 RRVVF-RG--SS---GPF-P-YE------DTYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENL 134 (140)
T ss_pred cEEEE-Ee--cC---CCc-c-eE------EEEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 22211 11 10 110 0 10 01335677665 99999998876 32334444454443333445555555
Q ss_pred HHHHH
Q 006356 374 QRQCE 378 (648)
Q Consensus 374 qRqce 378 (648)
.+..|
T Consensus 135 k~~~e 139 (140)
T cd08865 135 KALLE 139 (140)
T ss_pred HHHhh
Confidence 54443
No 77
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=73.50 E-value=3.2 Score=33.82 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 006356 9 ENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal 31 (648)
|+...+++..+|+.||..||+.|
T Consensus 23 d~~~a~~rl~~l~~EN~~Lr~eL 45 (52)
T PF12808_consen 23 DRSAARKRLSKLEGENRLLRAEL 45 (52)
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 78
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=71.81 E-value=43 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.3
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccc
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCM 241 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~I 241 (648)
.+..|.-.+..+-+++-|...|-+-.|..
T Consensus 6 ~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 6 RSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 34557888999999999999998876643
No 79
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.49 E-value=9.9 Score=32.90 Aligned_cols=59 Identities=32% Similarity=0.447 Sum_probs=40.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHH----HHHhhhhccc
Q 006356 4 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 76 (648)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El----~r~~~~~~k~ 76 (648)
|+-=..=.+|+-|.|.|+.+|..+.....++- ..-.-|+-||..||+|- +|+.+++.|+
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~q~~q--------------~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ--------------HQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333445788899999999998776553221 11224889999999995 5888887764
No 80
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=70.78 E-value=7 Score=36.20 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=24.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 5 LERHENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
.++.||..|++|+.+|+.||.-||+|+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999983
No 81
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=70.47 E-value=77 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.5
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccccccceEeEEee
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 252 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis 252 (648)
+..|...+.++-+.|.|...|.+-+|.+ ..++.++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4467788999999999999999988874 5566666
No 82
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.00 E-value=4.3 Score=35.05 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 006356 6 ERHENSLLRQENDKLRAENMSIR 28 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lr 28 (648)
-+.+|..|..||+.|+.||..+|
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566666666777777777777
No 83
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=69.09 E-value=47 Score=29.44 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=33.6
Q ss_pred eeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 325 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 325 clIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
+.+.+.+.|.|+|+|.+... .....++.+++...+.-+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767889999864222 1122345566767777777888888888876
No 84
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.02 E-value=7.3 Score=30.74 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (648)
+||..|++||++|++|=.++++.+
T Consensus 19 ~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 19 AEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555555555555554443
No 85
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=67.79 E-value=5.6 Score=42.35 Aligned_cols=18 Identities=39% Similarity=0.095 Sum_probs=13.5
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 006356 5 LERHENSLLRQENDKLRA 22 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~ 22 (648)
+-++||..||+|+++|++
T Consensus 70 ~l~~EN~~Lr~e~~~l~~ 87 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQ 87 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346899999999877633
No 86
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=67.19 E-value=27 Score=41.87 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred cCCCCceeccCCCCCCceEEEEecC-CCCCCCCCccEEEEEEEeecccChhHHHHhhhccc-cchhhhhhcC-CCCccee
Q 006356 422 STVHKWNKLNAGNVDEDVRVMTRKS-VDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDER-LRSEWDILSN-GGPMQEM 498 (648)
Q Consensus 422 s~~~~W~~l~~~~~~~dVrv~~rks-~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~-~R~eWd~Ls~-G~~vqe~ 498 (648)
+....|.-+.. ..++||+-.-. .+.-+...+-++ ++-=-++.+|+.||++|-+.. .|.|||.... |.-++++
T Consensus 195 ~~~~~Wr~~~c---~NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I 269 (719)
T PLN00188 195 FSRKHWRLLQC---QNGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV 269 (719)
T ss_pred cccCCeEEEEe---eccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe
Confidence 55566766521 23567664332 121111122222 333346789999999997444 9999997543 3333333
Q ss_pred eecccCCCCCceEEEEEecc----CCCCCCceEEEEcccCCCCceEEE-EeeccccchhhhhcCCCCCCc--cccCCCcE
Q 006356 499 AHIAKGQDHGNCVSLLRASA----INANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFA 571 (648)
Q Consensus 499 ~~Ia~G~~~gN~VSllr~~~----~~~~~~~mliLQesctd~sgS~vV-yAPVD~~~m~~vm~G~Dss~v--~LLPSGF~ 571 (648)
+...+|.--++.. .--...+..++.--.-+.-|+|++ |-+|.-+.- +--+.+| -+-|+||.
T Consensus 270 -------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwi 337 (719)
T PLN00188 270 -------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC-----GPQPGFVRAHLESGGFN 337 (719)
T ss_pred -------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEE
Confidence 4344555334331 112335666666533466777766 455554421 0012222 37799999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhc
Q 006356 572 IVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 614 (648)
Q Consensus 572 IlPdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~ 614 (648)
|.|--... ...+|+||--+|+=..
T Consensus 338 IsPL~~~~-------------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 338 ISPLKPRN-------------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EEECCCCC-------------------CCCceEEEEEEEEccC
Confidence 99933221 0146888877776443
No 87
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.85 E-value=2.8 Score=35.87 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=14.5
Q ss_pred hHHHHHHHhhhhhHHHHHHH
Q 006356 50 LEEQHLRIENARLKDELDRV 69 (648)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r~ 69 (648)
.+.++|+.||..|++|++..
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35667888888888887653
No 88
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=62.10 E-value=8.5 Score=40.26 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=21.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 5 LERHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal 31 (648)
.-+.||..||+||++|+.|+..+++..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~ 99 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLE 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999988888877776543
No 89
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=61.04 E-value=10 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
|...|-+|+++|+.+|.+||.-|+.
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678899999999999999988764
No 90
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=60.48 E-value=8.8 Score=38.34 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCCCCCCCCccCCCChHHHHHHHhhhhhHHHH
Q 006356 35 ICTNCGGPAIIGDISLEEQHLRIENARLKDEL 66 (648)
Q Consensus 35 ~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El 66 (648)
.||.||++...-|-+-..+.|+..=++|++|+
T Consensus 138 ~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 138 RCPQCGEMLEEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred cCCCCCCCCeecccHHHHHHHHHHHHHHHHHh
Confidence 48888888765443334444444444444443
No 91
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=56.11 E-value=1.7e+02 Score=27.08 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=61.8
Q ss_pred eEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCce
Q 006356 216 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 295 (648)
Q Consensus 216 lV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~ 295 (648)
.+...+.++-+++.|.++|-+-.|.+ +.+++++.+.....+...+ +... ...|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTWR-----GLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEEE-----ecCCcEEEEEEEEEeecCCcE
Confidence 45567889999999999999998874 6666776322122122222 1111 112222223344444334445
Q ss_pred EEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeeccc---cccccccccc
Q 006356 296 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES---QVHQLYKPLI 358 (648)
Q Consensus 296 WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~---~vh~lyrpl~ 358 (648)
+++. . ++. .. ...+ .-+++-++ +|+||+-.+++..-- -.+.++.+++
T Consensus 78 ~~~~-~--~g~---~~--~~~~-------~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~ 127 (146)
T cd07824 78 LEVR-A--SGD---LE--GVGR-------WTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVF 127 (146)
T ss_pred EEEE-E--EEe---ee--EEEE-------EEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHH
Confidence 5442 2 211 00 0111 23666555 499999888887542 2445555555
No 92
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.70 E-value=17 Score=30.97 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 006356 7 RHENSLLRQENDKLRAENMSIRD 29 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lre 29 (648)
|.||..||++.+.++.|+..+++
T Consensus 20 ~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 20 KSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444
No 93
>smart00340 HALZ homeobox associated leucin zipper.
Probab=53.32 E-value=12 Score=29.34 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.1
Q ss_pred HHHHHhhhhhHHHHHHHhhh
Q 006356 53 QHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~ 72 (648)
..|-.||.||+.|+..+.++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999988774
No 94
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=52.32 E-value=12 Score=32.86 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=16.0
Q ss_pred HHHHHhhhhhHHHHHHHhhhh
Q 006356 53 QHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~ 73 (648)
+.|+.||+|||+||.++.+-+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 348889999999999665543
No 95
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=51.15 E-value=5 Score=41.53 Aligned_cols=20 Identities=35% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 006356 10 NSLLRQENDKLRAENMSIRD 29 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lre 29 (648)
...||.-.+-|-+||.++|+
T Consensus 131 I~dLrrlVe~L~aeNErLr~ 150 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRR 150 (243)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566655553
No 96
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=50.36 E-value=16 Score=40.23 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=23.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 4 QLERHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal 31 (648)
+.-++||..||+||.+|++++.++.++.
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999977664
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.74 E-value=32 Score=35.33 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=12.4
Q ss_pred HHHhhhhhHHHHHHHhh
Q 006356 55 LRIENARLKDELDRVCA 71 (648)
Q Consensus 55 Lr~ENArLk~El~r~~~ 71 (648)
|+.||++|++|++.+..
T Consensus 137 L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 137 LKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888877776544
No 98
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.56 E-value=48 Score=32.97 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=30.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhh
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
-+.||..|+.|+++|+.+|..|... .++|..++..++++|.-+-.+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e---------------------~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKE---------------------LEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777777776654 3456666677777776655543
No 99
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.15 E-value=32 Score=31.83 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhHHHHHHHhh
Q 006356 51 EEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~ 71 (648)
|.++||+||+.||+-|+.+..
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 667788888888888877654
No 100
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=47.08 E-value=11 Score=39.95 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
+...-.++.|+.+..|.++|..-.++-|-. .|+..-.+.|..||+.||.+++.+..
T Consensus 188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~-------~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKE-------DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred hhcCCHHHHHHHHhhhHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666555554433 23333333344445444444444433
No 101
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.98 E-value=29 Score=27.40 Aligned_cols=22 Identities=45% Similarity=0.514 Sum_probs=12.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 006356 4 QLERHENSLLRQENDKLRAENMS 26 (648)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~ 26 (648)
|.||. =..||+.-|.|+++|.+
T Consensus 2 QlE~D-y~~LK~~yd~Lk~~~~~ 23 (45)
T PF02183_consen 2 QLERD-YDALKASYDSLKAEYDS 23 (45)
T ss_pred chHHH-HHHHHHHHHHHHHHHHH
Confidence 34443 34567777777777654
No 102
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.92 E-value=33 Score=32.08 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=16.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHhh
Q 006356 50 LEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r~~~ 71 (648)
-|.++||+||..||+.|+++..
T Consensus 36 EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 36 EENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3667888888888888887633
No 103
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=46.89 E-value=10 Score=35.34 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.5
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 006356 462 TSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 462 tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999998884
No 104
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=46.46 E-value=16 Score=32.34 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 006356 13 LRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n 33 (648)
.|.||+||+.||.-|++-|.|
T Consensus 42 Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 42 VKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777666654
No 105
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.44 E-value=23 Score=34.01 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhHHHHHHHhh
Q 006356 52 EQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 52 eq~Lr~ENArLk~El~r~~~ 71 (648)
..+|+.||++++.|+|-...
T Consensus 90 v~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 90 VEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677788888877765433
No 106
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.59 E-value=23 Score=32.55 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=5.5
Q ss_pred HhhhhhHHHHHHH
Q 006356 57 IENARLKDELDRV 69 (648)
Q Consensus 57 ~ENArLk~El~r~ 69 (648)
.||++|++|++++
T Consensus 48 ~~n~~L~~eI~~L 60 (105)
T PRK00888 48 ARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 107
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=45.57 E-value=52 Score=31.75 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSIR 28 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lr 28 (648)
+|..|++|.|+|+.||.+|+
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 108
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=45.19 E-value=41 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=49.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhhccccC
Q 006356 5 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLG 78 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~~g 78 (648)
.+|..|..+|..-||=|..+..|+.... ++.-|.+.||.+..+||+|+..++.+...|.-
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~--------------~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVA--------------ELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4577899999999999999888887762 34568889999999999999999887776643
No 109
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.95 E-value=2.7e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.8
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccc
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCM 241 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~I 241 (648)
.+-.|...+.++-+.|.|.+.|.+-+|++
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34557788999999999999999998874
No 110
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.45 E-value=11 Score=37.41 Aligned_cols=19 Identities=53% Similarity=0.707 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 006356 51 EEQHLRIENARLKDELDRV 69 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r~ 69 (648)
|...||+|+.|||||+.-+
T Consensus 25 EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776543
No 111
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.35 E-value=2.1e+02 Score=24.10 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=26.8
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccccccceEeEEee
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 252 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis 252 (648)
+..|...+..+-+.|.|...|..-+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 4556667899999999999999988884 4444444
No 112
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.17 E-value=20 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45789999999999999999999999984
No 113
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.13 E-value=17 Score=32.24 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
..++-++.||..||++|.|-.+..+|.-
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3577789999999999999999999973
No 114
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.09 E-value=27 Score=29.91 Aligned_cols=20 Identities=45% Similarity=0.649 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSIR 28 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lr 28 (648)
+|..|++|||.|+.|+...|
T Consensus 48 e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555554443
No 115
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.68 E-value=29 Score=35.98 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=13.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 006356 6 ERHENSLLRQENDKLRAENMSIRD 29 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lre 29 (648)
||+|=..||+|||||+.|=.++|.
T Consensus 114 e~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 114 ERSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666655544443
No 116
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=41.66 E-value=26 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=24.1
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
...++-++.||+.||++|.|.....+|.-
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 34677889999999999999999999963
No 117
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=41.34 E-value=15 Score=30.55 Aligned_cols=16 Identities=44% Similarity=1.086 Sum_probs=12.2
Q ss_pred HHhcCCCCCCCCCCCc
Q 006356 29 DAMRNPICTNCGGPAI 44 (648)
Q Consensus 29 eal~n~~C~~CGgp~~ 44 (648)
+.+.+-+||||||-.+
T Consensus 37 e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 37 ETMLNGVCPNCGGELV 52 (57)
T ss_pred HHHhcCcCcCCCCccc
Confidence 4555779999999654
No 118
>PF15058 Speriolin_N: Speriolin N terminus
Probab=40.67 E-value=92 Score=31.97 Aligned_cols=37 Identities=35% Similarity=0.547 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 13 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
||.++|+|-.||.+||... +|.-||-+||.=|...|.
T Consensus 10 lrhqierLv~ENeeLKKlV----------------------rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLV----------------------RLIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHhhhHHHHHHH----------------------HHHHHHHHHHHHHHHhhc
Confidence 5777777777777777665 366677777766544443
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=40.62 E-value=53 Score=36.77 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhh
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
.+..|+.+++.|+.+|..+++.+ .+++.|-.+||+|++++...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 23 KLKELEKELEFLDIQEEYIKEEQ---------------------KNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhCC
Confidence 34445555555556665555543 46788888899999988653
No 120
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.29 E-value=19 Score=33.62 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 006356 13 LRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n 33 (648)
|-.||-.||-||..||+.|..
T Consensus 34 lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 34 LVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHhhHHHHhhHHHHHHHhCC
Confidence 345777777777777888855
No 121
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.26 E-value=28 Score=28.52 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=18.8
Q ss_pred ChHHHHHHHhhhhhHHHHHHHhh
Q 006356 49 SLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 49 ~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
..+..+|+.||+.||+||++...
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667899999999999998643
No 122
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=40.08 E-value=23 Score=31.45 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEEeecccChhHHHHhhhccccchhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356789999999999999999999997
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.86 E-value=41 Score=38.02 Aligned_cols=45 Identities=33% Similarity=0.377 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHH
Q 006356 10 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 68 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (648)
-+.+++|+.+||+|-.+++.-+ ++...+.++|..||..|.+|.-+
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~--------------~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKL--------------QEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888888766 34456888999999999999877
No 124
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=39.45 E-value=71 Score=33.22 Aligned_cols=51 Identities=31% Similarity=0.393 Sum_probs=34.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhh
Q 006356 2 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 2 K~q~eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
|+|+++.+ ..+++-.+|||.|=..+-+ -|-..||.||.+||-||||+..-.
T Consensus 89 kaqq~~v~-~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 89 KAQQEKVS-YQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666654 5567777777777443322 134458899999999999887643
No 125
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=38.85 E-value=18 Score=32.60 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.0
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
..++-++.||++||+||.|.....+|..
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 3567789999999999999999999984
No 126
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=38.27 E-value=22 Score=32.41 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.6
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 4689999999999999999999999974
No 127
>smart00338 BRLZ basic region leucin zipper.
Probab=38.18 E-value=68 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006356 13 LRQENDKLRAENMSIRDA 30 (648)
Q Consensus 13 Lr~ENekLr~EN~~lrea 30 (648)
|..+.+.|.+||..|+..
T Consensus 31 Le~~~~~L~~en~~L~~~ 48 (65)
T smart00338 31 LERKVEQLEAENERLKKE 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 128
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=37.87 E-value=11 Score=39.20 Aligned_cols=19 Identities=53% Similarity=0.761 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSI 27 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~l 27 (648)
||..||.||..|++||.++
T Consensus 144 eNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 144 ENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 129
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=37.58 E-value=31 Score=32.56 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 006356 10 NSLLRQENDKLRAENMSIRDAMRNPICTNCGG 41 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~n~~C~~CGg 41 (648)
|-.||.++.-|+.-=..+.+.|+...|-.|-.
T Consensus 44 nqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 44 NQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 55566666555544455677788899999964
No 130
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.57 E-value=25 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
..++-++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999984
No 131
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=37.24 E-value=22 Score=32.89 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEeecccChhHHHHhhhccccchhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 132
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=37.08 E-value=54 Score=34.66 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 006356 11 SLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal 31 (648)
..|-.||++|+.||..||+-=
T Consensus 100 ~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 100 KDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777644
No 133
>PF14645 Chibby: Chibby family
Probab=36.52 E-value=35 Score=32.02 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 006356 7 RHENSLLRQENDKLRAENMSIR 28 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lr 28 (648)
..++..||.||..|+.||.-||
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lk 91 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLK 91 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666554
No 134
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.43 E-value=75 Score=39.26 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhh
Q 006356 13 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
|+.-+|.|--+=.-||+.|.|- ||. ..+.-+++--||-+.|+||||=|-|++.+.
T Consensus 337 lkEr~deletdlEILKaEmeek-----G~~-~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK-----GSD-GQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCC-CcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555555555678888876 443 333457899999999999999999998763
No 135
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.30 E-value=49 Score=32.22 Aligned_cols=55 Identities=27% Similarity=0.298 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhhcc
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGK 75 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k 75 (648)
+...|+.|+..|+.++..++..+++..+. + +.++ |+.+-+.|++|++.+..-+..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~-----t~~e--l~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSE-----P-----TNEE--LREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C-----CHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999876542 1 2222 666666666666655554443
No 136
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=36.13 E-value=91 Score=28.09 Aligned_cols=11 Identities=18% Similarity=0.592 Sum_probs=7.1
Q ss_pred HhhhhhHHHHH
Q 006356 57 IENARLKDELD 67 (648)
Q Consensus 57 ~ENArLk~El~ 67 (648)
++|++.|...+
T Consensus 53 vkn~~vrqkne 63 (87)
T PF10883_consen 53 VKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHhH
Confidence 67777775544
No 137
>PF15058 Speriolin_N: Speriolin N terminus
Probab=36.07 E-value=36 Score=34.82 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHHH------HHHHHHHHHhcCC
Q 006356 7 RHENSLLRQENDKLR------AENMSIRDAMRNP 34 (648)
Q Consensus 7 R~eN~~Lr~ENekLr------~EN~~lreal~n~ 34 (648)
||.+..|=.|||.|| .||.++|.||..+
T Consensus 11 rhqierLv~ENeeLKKlVrLirEN~eLksaL~ea 44 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLIRENHELKSALGEA 44 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555665554 4888888886433
No 138
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.03 E-value=43 Score=31.04 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
.=..|-.||..||-||..||+.|..
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777888888888877743
No 139
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.99 E-value=63 Score=28.09 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhh
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
.|+.||=.|+-.-.-|.+.+.+ .+|....++.-+.=.|+.|++.|+.|+++....
T Consensus 11 ~L~KENF~LKLrI~fLee~l~~------~~~~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 11 KLKKENFNLKLRIYFLEERLQK------LGPESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777778888862 233333333444446788888888887776554
No 140
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=35.57 E-value=91 Score=27.54 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=12.5
Q ss_pred HHHhhhhhHHHHHHHhhhhccccC
Q 006356 55 LRIENARLKDELDRVCALAGKFLG 78 (648)
Q Consensus 55 Lr~ENArLk~El~r~~~~~~k~~g 78 (648)
|++|=++|+. .+|+..+|.+-+|
T Consensus 61 L~lE~~~l~~-~~rIe~iA~~~Lg 83 (97)
T PF04999_consen 61 LRLEIATLSS-PSRIERIAREKLG 83 (97)
T ss_pred HHHHHHHhhC-HHHHHHHHHHcCC
Confidence 4444444443 3566666775555
No 141
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=35.41 E-value=18 Score=37.48 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=91.5
Q ss_pred ccCCCCceeccCCCCCCceEEEE-ecCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCccee
Q 006356 421 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 498 (648)
Q Consensus 421 ~s~~~~W~~l~~~~~~~dVrv~~-rks~~~~g~p~G~VLsA~tS~wLP-vpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~ 498 (648)
+-.+.+|..+- + ..+++|.. |.- +.| | =.. ++-.-+. ++|..|+||+-|..-|.+||.+.--. ..+
T Consensus 25 ~~~~~~We~~~-~--k~~~~i~~q~~~--~~g-~-~~Y---k~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~--e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELVM-D--KSTPSIWRQRRP--KTG-L-YEY---KSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL--ETI 92 (219)
T ss_pred cCcccchhhhc-c--cCCceEEEEccc--CCC-C-EEE---EEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh--eee
Confidence 56788999873 2 35677766 332 123 2 123 3334467 99999999999999999999752111 111
Q ss_pred eecccCCCCCceEEEEEec--cCCCCCCceEEEEcccCCCC--ceEEEEeeccccchhhhhcCCCCCCccccCCCcEEc-
Q 006356 499 AHIAKGQDHGNCVSLLRAS--AINANQSSMLILQETCTDAA--GSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIV- 573 (648)
Q Consensus 499 ~~Ia~G~~~gN~VSllr~~--~~~~~~~~mliLQesctd~s--gS~vVyAPVD~~~m~~vm~G~Dss~v~LLPSGF~Il- 573 (648)
... ...||- |++=. -.-+-.+.-++++-.+.+.. ..+++-=-|+-+++= --.+.--+-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P---~~~~~vRv~~~~s~~~I~~ 164 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYP---PLKKKVRVTVYRSGWLIRV 164 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcC---CcCCcEEEEEEEEEEEEEc
Confidence 111 112332 33311 11111223344443333322 122222112222100 000012233555777776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh-HhhhhhHHHHHHHHhhc
Q 006356 574 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 645 (648)
Q Consensus 574 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t-V~~li~~TVq~Ik~AL~ 645 (648)
| ..+ ....||-.+ ++.-.+|...+..+-|.= +...+-..|.++-.|+.
T Consensus 165 ~----~~~----------------~~~~~~~~~----~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 165 E----SRS----------------GDEQGCACE----YLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred c----ccc----------------CCCCccEEE----EEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2 000 011344333 344457888888776654 78888889999888874
No 142
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.36 E-value=35 Score=39.17 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
.||..|++|||+||..+..+.+.+.+++=. ...++.-|.++|..|=++|+..++.+..
T Consensus 80 ~~N~~l~~eN~~L~~r~~~id~~i~~av~~------~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 80 SENEALKAENERLQKREQSIDQQIQQAVQS------ETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666655433333333332211 1244556778888888888888876644
No 143
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.24 E-value=27 Score=29.67 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.8
Q ss_pred EEeecccChhHHHHhhhccccchhhhh
Q 006356 462 TSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 462 tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 144
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=35.10 E-value=29 Score=31.04 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 006356 459 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 459 sA~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345788899999999999999999999984
No 145
>smart00338 BRLZ basic region leucin zipper.
Probab=34.62 E-value=52 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 4 QLERHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal 31 (648)
+.-..+|..|+.+++.|+.||..|++-+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345588888888888888888887755
No 146
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=34.44 E-value=25 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEEeecccChhHHHHhhhccccchhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
..|+-++.||+.||++|.|..+-++|.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~ 29 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWF 29 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhh
Confidence 357788999999999999999999996
No 147
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.08 E-value=30 Score=31.50 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.6
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 006356 462 TSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 462 tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
.+.-++.||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 46667899999999999999999997
No 148
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=33.82 E-value=33 Score=39.83 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=9.9
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 006356 51 EEQHLRIENARLKDELDRV 69 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r~ 69 (648)
|.++||.|||-||+.|+-+
T Consensus 317 Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 4455555555555555443
No 149
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=32.34 E-value=77 Score=33.90 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=17.8
Q ss_pred hHHHHHHHhhhhhHHHHHHHhhh
Q 006356 50 LEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
.++++||.|+-+|++|+.++..-
T Consensus 209 ~r~~~lr~~~~~l~~el~~aK~~ 231 (264)
T PF07246_consen 209 ARESGLRNESKWLEHELSDAKED 231 (264)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHH
Confidence 45677899999999999876543
No 150
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.92 E-value=1e+02 Score=26.43 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHH
Q 006356 13 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 68 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r 68 (648)
|-+-.+.|+.||..+|+.. ..++.|+++|++-.+-
T Consensus 12 Li~~~~~L~~EN~~Lr~q~---------------------~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQE---------------------KTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 4556678888888888755 3477888888776653
No 151
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.77 E-value=89 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=26.8
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhhhc
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWDILS 490 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls 490 (648)
...|.-++.||++||+++.|.....+|.-..
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3567788999999999999999999998643
No 152
>PHA03162 hypothetical protein; Provisional
Probab=31.71 E-value=1.4e+02 Score=28.99 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPI 35 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~ 35 (648)
.|-+|..||+-||..||..|+...
T Consensus 17 eLaaeL~kLqmENK~LKkkl~~~~ 40 (135)
T PHA03162 17 DLAAEIAKLQLENKALKKKIKEGT 40 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999996544
No 153
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=30.49 E-value=50 Score=33.28 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=18.9
Q ss_pred CCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHH
Q 006356 35 ICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 69 (648)
Q Consensus 35 ~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~ 69 (648)
.||.||.....-+-+-.-..|.-+=-+|++|++|.
T Consensus 134 ~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~ 168 (176)
T COG1675 134 TCPKCGEDLEEYDSSEEIEELESELDELEEELERN 168 (176)
T ss_pred CCCCCCchhhhccchHHHHHHHHHHHHHHHHHhcc
Confidence 47777777655444444444444444555555443
No 154
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.23 E-value=1.1e+02 Score=30.81 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 006356 9 ENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal 31 (648)
-|.+||.++|..+..|.+|++-+
T Consensus 82 vN~lLReQLEq~~~~N~~L~~dl 104 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQEDL 104 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776655
No 155
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=29.19 E-value=1.6e+02 Score=28.50 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=30.5
Q ss_pred eEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccc
Q 006356 246 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 306 (648)
Q Consensus 246 ~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~ 306 (648)
..+++++....+..+|.--.+.+++.-.+. .|..=.|-|+. .+|.|-|+||.+++.
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~~----~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLRK----KDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EEEEEEEEEEE----ETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEEE----cCCCeEEEEEEEcce
Confidence 456666555544334555667777766655 33333344443 889999999999976
No 156
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=28.95 E-value=2.5e+02 Score=24.91 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=55.2
Q ss_pred EechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEE
Q 006356 218 IINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWA 297 (648)
Q Consensus 218 ~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~Wa 297 (648)
...+..+-+++.|.+.|.+.||.+ +-++|+..... -|.+++.+.-...+ ..|+.|...+-.+.
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~----~~v~vl~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 64 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPV----KEVRVLERDGD--------GMRARWEVKFGGIK--RSWTSRVTEDPPER--- 64 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTE----EEEEEEEEECC--------EEEEEEEECTTTTC--EEEEEEEEEECTTT---
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCC----ceEEEEEeCCC--------eEEEEEEEecCCEE--EEEEEEEEEEEeee---
Confidence 345778899999999999999995 55667764431 24445555544443 33444444443333
Q ss_pred EEEEecccccCCCCCCCcccccccCCceeEeecC--CCceEEEEEEeeeeccc
Q 006356 298 VVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDES 348 (648)
Q Consensus 298 VvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~ 348 (648)
+-+....+.. ..+...|+ +++.. +|++.+++.-.++++..
T Consensus 65 ~~~~~~~g~~-----~~~~g~W~------~~~~~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 65 IRFEQISGPF-----KSFEGSWR------FEPLGGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp EEEESSETTE-----EEEEEEEE------EEEETTECCEEEEEEEEEEEEETS
T ss_pred eeeeecCCCc-----hhcEEEEE------EEECCCCcCCCEEEEEEEEEEecC
Confidence 2222222110 01122222 22333 35777777777777544
No 157
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.93 E-value=84 Score=33.26 Aligned_cols=19 Identities=58% Similarity=0.772 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSI 27 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~l 27 (648)
||.+|+.|||.||+-|..|
T Consensus 105 en~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 105 ENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766655
No 158
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=28.75 E-value=32 Score=28.81 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=14.2
Q ss_pred HHHHHhhhhhHHHHHH
Q 006356 53 QHLRIENARLKDELDR 68 (648)
Q Consensus 53 q~Lr~ENArLk~El~r 68 (648)
+++|.||.+||.|++|
T Consensus 2 ~~~~~~ve~Lr~el~~ 17 (63)
T smart00224 2 DQLRKEVEQLRKELSR 17 (63)
T ss_pred hHHHHHHHHHHHHHCC
Confidence 5789999999999985
No 159
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.48 E-value=56 Score=27.25 Aligned_cols=16 Identities=44% Similarity=0.798 Sum_probs=8.4
Q ss_pred HHHHhhhhhHHHHHHH
Q 006356 54 HLRIENARLKDELDRV 69 (648)
Q Consensus 54 ~Lr~ENArLk~El~r~ 69 (648)
+|+.||..|++|++++
T Consensus 35 ~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 35 ELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555555555555
No 160
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.17 E-value=65 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=20.6
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 2 KTQLERHENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 2 K~q~eR~eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
|.++-+.+|..|.+||+.|+.|=..-...++|
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777775555555543
No 161
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.88 E-value=47 Score=29.42 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.7
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 006356 462 TSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 462 tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
.+.-++.||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46678899999999999999999997
No 162
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=27.86 E-value=61 Score=25.65 Aligned_cols=17 Identities=41% Similarity=0.280 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHH
Q 006356 8 HENSLLRQENDKLRAEN 24 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN 24 (648)
.+...|+.||..||.++
T Consensus 28 ~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 28 NEVSKLLNENVNLRELV 44 (46)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 34555555555555554
No 163
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.09 E-value=55 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal 31 (648)
+.+-..+++||++|+.||.+|++.+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777666655
No 164
>COG5570 Uncharacterized small protein [Function unknown]
Probab=27.01 E-value=1e+02 Score=25.52 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 25 MSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 25 ~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
..+.|||..|.| .+ ..-..|.-.--||||||+++.+
T Consensus 19 ~ei~ea~n~Ps~---dd--------~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 19 REIQEAMNSPSS---DD--------LAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHhcCCCc---ch--------HHHHHHHHHHHHHHHHHHHHhc
Confidence 458899977655 33 1233355556679999999876
No 165
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.67 E-value=64 Score=32.97 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (648)
.|=..||+.|.||+.||.+||+..
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999864
No 166
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.57 E-value=1.2e+02 Score=32.59 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhhcc
Q 006356 15 QENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGK 75 (648)
Q Consensus 15 ~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k 75 (648)
++..++..||.++|+.+ .+.+|+..|...||+|..|+..+..-
T Consensus 66 ~~~~~~~~en~~Lk~~l------------------~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 66 KSLKDLALENEELKKEL------------------AELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHhHHHHHHhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56788889999999988 47788888999999999998876554
No 167
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.09 E-value=1.6e+02 Score=25.08 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHhhhhhHHHH------HHHhhhhccccC
Q 006356 55 LRIENARLKDEL------DRVCALAGKFLG 78 (648)
Q Consensus 55 Lr~ENArLk~El------~r~~~~~~k~~g 78 (648)
|+.||.+|+.|+ +|+..+|.+.+|
T Consensus 43 l~~en~~L~~ei~~l~~~~rIe~~Ar~~lg 72 (85)
T TIGR02209 43 LQKEWRDLQLEVAELSRHERIEKIAKKQLG 72 (85)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 344445555444 455566776655
No 168
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.06 E-value=81 Score=28.00 Aligned_cols=23 Identities=17% Similarity=0.396 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 006356 10 NSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~ 32 (648)
+..|++||++||.|-..-.+.++
T Consensus 48 r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 48 REELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 169
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.70 E-value=45 Score=30.57 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.3
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 006356 462 TSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 462 tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988887776
No 170
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=25.27 E-value=3e+02 Score=24.52 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHH---HHHHHHHhcCCC-CCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhh
Q 006356 7 RHENSLLRQENDKLRAE---NMSIRDAMRNPI-CTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~E---N~~lreal~n~~-C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
+.--..|.+|-.+|+.. -..+|.||.++. ++.+-.+..+..++..-+.|..|=|-|..|+-++-..
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666665432 234555544443 2322233333455668888999999999998776543
No 171
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.80 E-value=55 Score=26.82 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 006356 6 ERHENSLLRQENDKLRAENMSIR 28 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lr 28 (648)
-|.++..++.|.+++++|+.++|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35677778888888888877654
No 172
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.62 E-value=90 Score=28.10 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHH
Q 006356 8 HENSLLRQENDKLR 21 (648)
Q Consensus 8 ~eN~~Lr~ENekLr 21 (648)
.||..|+.|.+-||
T Consensus 24 ~e~~~L~eEI~~Lr 37 (86)
T PF12711_consen 24 EENEALKEEIQLLR 37 (86)
T ss_pred HHHHHHHHHHHHHH
Confidence 57788888888888
No 173
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.59 E-value=78 Score=33.44 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhh
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
-|..|.+|+.+++.+...+|.. ...||..|-+|=|-+.-+.+.-
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~E---------------------v~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRRE---------------------VESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhhCc
Confidence 5555556665555555555544 4568888888877766655543
No 174
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=24.16 E-value=57 Score=29.50 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=25.4
Q ss_pred EEEeecccChhHHHHhhhccccchhhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
..++.++.||++||+.+.|..+..+|--
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4688899999999999999999999963
No 175
>PHA03155 hypothetical protein; Provisional
Probab=24.13 E-value=35 Score=32.16 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.0
Q ss_pred cCCCChHHHHHHHhhhhhHHHHHH
Q 006356 45 IGDISLEEQHLRIENARLKDELDR 68 (648)
Q Consensus 45 ~~~~~~eeq~Lr~ENArLk~El~r 68 (648)
.+|+..|.|+|++||-.||.-+.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777999999999999998844
No 176
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=1e+02 Score=26.87 Aligned_cols=27 Identities=26% Similarity=0.547 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
++.+-.|+.||+.|+.|...-+|.++.
T Consensus 45 q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 45 QHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888777777654
No 177
>PHA03162 hypothetical protein; Provisional
Probab=23.62 E-value=42 Score=32.38 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.9
Q ss_pred ccCCCChHHHHHHHhhhhhHHHHHH
Q 006356 44 IIGDISLEEQHLRIENARLKDELDR 68 (648)
Q Consensus 44 ~~~~~~~eeq~Lr~ENArLk~El~r 68 (648)
..+|+..|.|+|.+||-.||.-+.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778999999999999999854
No 178
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.55 E-value=1.9e+02 Score=33.03 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 33 NPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 33 n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
...||.|+.+.... ...-..|..+=+.|++|++.+..
T Consensus 284 ~~~Cp~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~ 320 (562)
T PHA02562 284 GGVCPTCTQQISEG--PDRITKIKDKLKELQHSLEKLDT 320 (562)
T ss_pred CCCCCCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999987544 22222333333444455444433
No 179
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.13 E-value=99 Score=28.93 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC
Q 006356 11 SLLRQENDKLRAENMSIRDAMRNP 34 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~ 34 (648)
..|-.||-.|+-||..||+.|...
T Consensus 32 ~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 32 AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567777777777777777654
No 180
>PHA03155 hypothetical protein; Provisional
Probab=23.10 E-value=80 Score=29.82 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPI 35 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~ 35 (648)
.|-+|..||+-||..||..|+...
T Consensus 12 eLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 12 ELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 588999999999999999997754
No 181
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=22.82 E-value=88 Score=26.34 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=27.8
Q ss_pred CCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhh
Q 006356 34 PICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 34 ~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
.+|..||. |+|.|--+|-++-..||+=+..++..
T Consensus 5 lvCSTCGr-----DlSeeRy~Lli~~~~Lk~Vl~~v~n~ 38 (63)
T PF05864_consen 5 LVCSTCGR-----DLSEERYRLLIKEMSLKKVLRTVKNS 38 (63)
T ss_pred eeecccCC-----cchHHHHHHHHHHhhHHHHHHHhhcc
Confidence 47999997 55667788999999999999887654
No 182
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=22.15 E-value=1.3e+02 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPIC 36 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C 36 (648)
.|-+|..||+-||.+||..|+...=
T Consensus 7 eLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 7 ELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5889999999999999999987654
No 183
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=22.14 E-value=42 Score=26.63 Aligned_cols=8 Identities=63% Similarity=1.282 Sum_probs=6.2
Q ss_pred HHHHHHHH
Q 006356 364 FGAQRWVA 371 (648)
Q Consensus 364 fGA~RWla 371 (648)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 38999976
No 184
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.14 E-value=99 Score=26.40 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 5 LERHENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
+.+.+-..+++|.++++.||.+|+..+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888776644
No 185
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=21.88 E-value=55 Score=29.21 Aligned_cols=25 Identities=12% Similarity=0.441 Sum_probs=22.7
Q ss_pred EeecccChhHHHHhhhccccchhhh
Q 006356 463 SVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 463 S~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
+.-++.||++||+.|-|..+..+|.
T Consensus 5 ~~~i~ap~e~Vw~~~td~~~~~~W~ 29 (136)
T cd08893 5 VTYIRATPEKVWQALTDPEFTRQYW 29 (136)
T ss_pred EEEecCCHHHHHHHHcCchhhhhee
Confidence 5667899999999999999999995
No 186
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=21.86 E-value=52 Score=27.00 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=14.0
Q ss_pred HHHHHhhhhhHHHHHH
Q 006356 53 QHLRIENARLKDELDR 68 (648)
Q Consensus 53 q~Lr~ENArLk~El~r 68 (648)
+++|.||.+||.|++|
T Consensus 2 ~~~~~~veqLr~el~~ 17 (57)
T cd00068 2 DQLKKEVEQLRKELSR 17 (57)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 5789999999999874
No 187
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.81 E-value=62 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=29.4
Q ss_pred EEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecc
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 502 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia 502 (648)
.+++-++.||+.||+.+.|..+-.+|.- .++++-.+.
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~-----~v~~~~~~~ 40 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWP-----GVERVVELE 40 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhh-----ceEEEEEcc
Confidence 3677889999999999999999999995 344444444
No 188
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=21.81 E-value=30 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=8.1
Q ss_pred cCCCCCCCCCCCcc
Q 006356 32 RNPICTNCGGPAII 45 (648)
Q Consensus 32 ~n~~C~~CGgp~~~ 45 (648)
++..|+.||+|+..
T Consensus 2 ~~rfC~~CG~~t~~ 15 (32)
T PF09297_consen 2 NHRFCGRCGAPTKP 15 (32)
T ss_dssp TTSB-TTT--BEEE
T ss_pred CCcccCcCCccccC
Confidence 35689999999854
No 189
>PRK11415 hypothetical protein; Provisional
Probab=21.78 E-value=3.7e+02 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.9
Q ss_pred ChHHHHHHHhhhhhHHHHHHHh
Q 006356 49 SLEEQHLRIENARLKDELDRVC 70 (648)
Q Consensus 49 ~~eeq~Lr~ENArLk~El~r~~ 70 (648)
..+.++|+-+-.+|||||.++-
T Consensus 45 d~~i~~LKk~KL~LKDeI~~~L 66 (74)
T PRK11415 45 NAEVVRMKKQKLQLKDEMLKIL 66 (74)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3578999999999999998763
No 190
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.53 E-value=2.3e+02 Score=23.22 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH
Q 006356 13 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 67 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (648)
|..+.+.|..||..|++.+ +.|..|+..|+.|+.
T Consensus 31 Le~~~~~L~~en~~L~~~~---------------------~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 31 LEEKVEELESENEELKKEL---------------------EQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhcc
No 191
>PRK03918 chromosome segregation protein; Provisional
Probab=21.46 E-value=1.5e+02 Score=35.90 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCcc
Q 006356 33 NPICTNCGGPAII 45 (648)
Q Consensus 33 n~~C~~CGgp~~~ 45 (648)
.+.||.|+.|...
T Consensus 435 ~~~Cp~c~~~L~~ 447 (880)
T PRK03918 435 KGKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCCcCCc
Confidence 4679999998754
No 192
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.18 E-value=50 Score=31.31 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHhhhhhHHHHHHH
Q 006356 46 GDISLEEQHLRIENARLKDELDRV 69 (648)
Q Consensus 46 ~~~~~eeq~Lr~ENArLk~El~r~ 69 (648)
+|+..+.|+|.+||-.||.-+.+-
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345678999999999999998763
No 193
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=21.14 E-value=64 Score=31.56 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.4
Q ss_pred CCCCCCCCCcc
Q 006356 35 ICTNCGGPAII 45 (648)
Q Consensus 35 ~C~~CGgp~~~ 45 (648)
.||.||++...
T Consensus 130 ~Cp~Cg~~L~~ 140 (158)
T TIGR00373 130 TCPRCGAMLDY 140 (158)
T ss_pred cCCCCCCEeee
Confidence 47777777643
No 194
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=21.03 E-value=1e+02 Score=26.97 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=18.9
Q ss_pred ccChhHHHHhhhccccchhh
Q 006356 467 PVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 467 Pvpp~~vf~FLRde~~R~eW 486 (648)
++||++||+.|-|+.+..+|
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW 20 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH
T ss_pred CcCHHHHHHHHCCHhHHhhc
Confidence 47999999999999999999
No 195
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.56 E-value=1.2e+02 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 8 HENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
.+|..|+.|++.|+.|...++..+.
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888888777776664
No 196
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=20.34 E-value=1.3e+02 Score=36.01 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCCCCccCCCCh----------HHHHHHHhhhhhHHHHHHH
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRN----PICTNCGGPAIIGDISL----------EEQHLRIENARLKDELDRV 69 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n----~~C~~CGgp~~~~~~~~----------eeq~Lr~ENArLk~El~r~ 69 (648)
|.+|..|+.|+++|+.++..+...|.. .-...=.....+--..+ +...||.||++|++-+..+
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 197
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=20.15 E-value=89 Score=24.32 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCCCCCCCCCcc
Q 006356 25 MSIRDAMRNPICTNCGGPAII 45 (648)
Q Consensus 25 ~~lreal~n~~C~~CGgp~~~ 45 (648)
..-=-+|.+..||.||.|.+.
T Consensus 9 LL~G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 9 LLQGWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HHHhHhHhcCccCCCCCeeEE
Confidence 333457888899999998753
No 198
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.12 E-value=1.2e+02 Score=30.29 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHH
Q 006356 11 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 69 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~ 69 (648)
..|+.||++|+.|+..+++.. .+|..||..|+.++.-+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~---------------------e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRN---------------------EELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 356778888888888877765 34888888888887654
Done!