Query 006356
Match_columns 648
No_of_seqs 173 out of 284
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 4.7E-20 1.6E-24 182.2 18.5 199 150-380 22-229 (231)
2 1em2_A MLN64 protein; beta bar 99.3 1.3E-10 4.6E-15 114.5 17.5 196 150-380 21-226 (229)
3 2pso_A STAR-related lipid tran 99.3 2.6E-11 8.9E-16 121.6 12.2 172 155-354 33-206 (237)
4 3p0l_A Steroidogenic acute reg 99.3 7.7E-11 2.6E-15 115.8 15.2 193 152-378 12-213 (221)
5 1ln1_A PC-TP, phosphatidylchol 99.1 1.5E-09 5.1E-14 105.1 14.7 151 210-380 53-210 (214)
6 1jss_A Stard4, cholesterol-reg 99.0 6.5E-09 2.2E-13 102.5 14.5 191 151-378 25-222 (224)
7 3fo5_A Thioesterase, adipose a 98.8 2.3E-08 7.8E-13 102.1 13.0 122 212-345 91-216 (258)
8 3qsz_A STAR-related lipid tran 98.7 2.4E-07 8.1E-12 88.3 14.8 152 210-379 28-179 (189)
9 2e3n_A Lipid-transfer protein 98.4 3.4E-06 1.2E-10 84.4 14.2 152 211-380 75-247 (255)
10 2r55_A STAR-related lipid tran 97.4 0.011 3.7E-07 57.9 18.9 198 399-645 19-227 (231)
11 3qsz_A STAR-related lipid tran 97.1 0.014 4.9E-07 55.1 15.9 171 425-645 3-178 (189)
12 3p0l_A Steroidogenic acute reg 96.7 0.046 1.6E-06 53.2 16.2 193 403-645 11-213 (221)
13 1jss_A Stard4, cholesterol-reg 96.6 0.029 9.9E-07 54.9 14.0 191 404-645 26-222 (224)
14 1ln1_A PC-TP, phosphatidylchol 96.5 0.054 1.8E-06 51.9 14.7 171 423-644 26-207 (214)
15 1em2_A MLN64 protein; beta bar 96.3 0.1 3.4E-06 51.0 15.8 196 402-645 21-224 (229)
16 2pso_A STAR-related lipid tran 95.9 0.14 4.8E-06 50.9 14.9 175 423-646 48-227 (237)
17 2d4r_A Hypothetical protein TT 95.9 0.099 3.4E-06 45.1 12.1 141 213-381 6-146 (147)
18 3fo5_A Thioesterase, adipose a 95.0 0.15 5.3E-06 51.8 11.5 153 397-576 41-202 (258)
19 2j5u_A MREC protein; bacterial 93.2 0.027 9.3E-07 57.2 1.8 37 13-67 24-60 (255)
20 3tfz_A Cyclase; helix-GRIP, BE 92.2 2 7E-05 39.8 13.1 121 212-358 8-129 (172)
21 3tl1_A WHIE ORF VI, polyketide 91.9 2.8 9.5E-05 39.1 13.6 141 212-381 6-148 (159)
22 2jee_A YIIU; FTSZ, septum, coi 91.2 0.38 1.3E-05 41.2 6.0 52 11-76 23-78 (81)
23 1t17_A Conserved hypothetical 90.0 1.1 3.8E-05 40.1 8.6 141 212-380 5-145 (148)
24 3tvq_A Multifunctional cyclase 89.6 5.7 0.00019 37.4 13.5 144 212-382 6-149 (169)
25 2e3n_A Lipid-transfer protein 89.5 6.8 0.00023 38.6 14.6 173 404-614 28-217 (255)
26 3p9v_A Uncharacterized protein 83.1 16 0.00054 33.4 12.5 139 212-376 10-148 (161)
27 3ra3_B P2F; coiled coil domain 78.4 1.2 4.2E-05 30.0 2.2 17 53-69 3-19 (28)
28 1go4_E MAD1 (mitotic arrest de 72.9 8 0.00027 34.3 6.6 70 7-76 18-94 (100)
29 2yy0_A C-MYC-binding protein; 72.1 3.8 0.00013 32.2 4.0 24 8-31 26-49 (53)
30 2pcs_A Conserved protein; stru 71.5 55 0.0019 29.0 14.7 118 214-358 8-127 (162)
31 1l8d_A DNA double-strand break 71.3 3.4 0.00012 36.1 4.0 12 33-44 47-58 (112)
32 3he5_B Synzip2; heterodimeric 66.8 16 0.00056 27.7 6.2 45 8-73 3-47 (52)
33 2yy0_A C-MYC-binding protein; 65.2 5.2 0.00018 31.5 3.4 22 9-30 20-41 (53)
34 3m91_A Proteasome-associated A 64.9 16 0.00056 28.5 6.1 43 7-70 8-50 (51)
35 2j5u_A MREC protein; bacterial 64.0 3.4 0.00012 41.8 2.8 25 6-30 24-48 (255)
36 1a93_B MAX protein, coiled coi 63.5 7.7 0.00026 28.1 3.7 28 5-32 4-31 (34)
37 3m9b_A Proteasome-associated A 63.1 5.8 0.0002 40.4 4.2 40 11-71 57-96 (251)
38 1ci6_A Transcription factor AT 61.0 15 0.00053 29.5 5.6 39 7-66 22-60 (63)
39 3m48_A General control protein 59.9 7 0.00024 28.1 2.9 23 52-74 9-31 (33)
40 2oa5_A Hypothetical protein BQ 59.5 12 0.0004 33.7 5.0 27 12-40 12-38 (110)
41 3s9g_A Protein hexim1; cyclin 59.2 3.3 0.00011 36.6 1.4 52 11-69 40-91 (104)
42 1t2k_D Cyclic-AMP-dependent tr 56.3 22 0.00074 28.2 5.7 23 9-31 23-45 (61)
43 1gd2_E Transcription factor PA 51.7 5 0.00017 33.3 1.3 18 9-26 51-68 (70)
44 3oja_A Leucine-rich immune mol 50.0 16 0.00054 39.3 5.2 24 49-72 441-464 (487)
45 2qpv_A Uncharacterized protein 49.2 11 0.00039 35.0 3.4 30 459-488 28-57 (156)
46 1hjb_A Ccaat/enhancer binding 48.5 15 0.0005 31.7 3.7 24 9-32 51-74 (87)
47 2d4r_A Hypothetical protein TT 46.3 9.7 0.00033 32.3 2.3 29 460-488 4-32 (147)
48 1t2k_D Cyclic-AMP-dependent tr 45.4 19 0.00064 28.5 3.7 26 6-31 34-59 (61)
49 1gu4_A CAAT/enhancer binding p 45.4 12 0.0004 31.7 2.6 26 7-32 49-74 (78)
50 1ci6_A Transcription factor AT 44.2 20 0.00068 28.8 3.7 29 4-32 33-61 (63)
51 1deb_A APC protein, adenomatou 42.2 12 0.0004 29.3 1.9 22 54-75 14-35 (54)
52 1hjb_A Ccaat/enhancer binding 41.5 41 0.0014 28.9 5.5 15 61-75 61-75 (87)
53 2pcs_A Conserved protein; stru 41.4 11 0.00036 33.9 1.9 28 460-487 5-32 (162)
54 2ns9_A Hypothetical protein AP 40.9 12 0.00041 33.0 2.1 29 459-487 14-42 (157)
55 3p51_A Uncharacterized protein 40.0 1E+02 0.0034 28.4 8.4 112 213-347 6-118 (160)
56 1go4_E MAD1 (mitotic arrest de 39.6 11 0.00037 33.4 1.6 17 12-28 16-32 (100)
57 1uii_A Geminin; human, DNA rep 39.4 52 0.0018 28.2 5.6 20 55-74 58-77 (83)
58 1t6f_A Geminin; coiled-coil, c 38.2 24 0.00084 25.7 2.9 11 19-29 25-35 (37)
59 2dfs_A Myosin-5A; myosin-V, in 37.0 16 0.00054 44.2 2.9 55 8-72 991-1045(1080)
60 3ggn_A Uncharacterized protein 36.4 20 0.00068 32.4 2.9 30 459-488 5-34 (155)
61 2leq_A Uncharacterized protein 35.2 24 0.00081 30.3 3.1 28 459-486 6-33 (146)
62 1t17_A Conserved hypothetical 35.2 18 0.0006 32.1 2.3 29 460-488 4-32 (148)
63 2wt7_A Proto-oncogene protein 35.0 78 0.0027 25.2 5.8 38 8-66 23-60 (63)
64 3q6a_A Uncharacterized protein 32.7 26 0.00088 30.5 2.9 27 461-487 4-30 (135)
65 1x53_A Activator of 90 kDa hea 32.4 26 0.00088 31.0 2.9 28 460-487 13-40 (145)
66 1nkp_B MAX protein, MYC proto- 32.2 42 0.0014 27.9 4.0 27 7-33 53-79 (83)
67 1nlw_A MAD protein, MAX dimeri 32.2 42 0.0014 28.2 4.0 27 6-32 52-78 (80)
68 1jnm_A Proto-oncogene C-JUN; B 31.9 52 0.0018 26.0 4.3 21 10-30 24-44 (62)
69 3i00_A HIP-I, huntingtin-inter 30.7 1E+02 0.0036 27.8 6.6 58 6-71 20-82 (120)
70 3po3_S Transcription elongatio 30.2 32 0.0011 33.0 3.3 31 10-42 107-146 (178)
71 2oxj_A Hybrid alpha/beta pepti 29.8 39 0.0013 24.3 2.8 22 53-74 11-32 (34)
72 3tfz_A Cyclase; helix-GRIP, BE 29.8 31 0.0011 31.6 3.1 29 459-487 6-34 (172)
73 2zxx_A Geminin; coiled-coil, c 29.7 75 0.0026 27.0 5.1 20 54-73 52-71 (79)
74 2jee_A YIIU; FTSZ, septum, coi 29.6 36 0.0012 29.1 3.1 18 9-26 28-45 (81)
75 1uii_A Geminin; human, DNA rep 29.3 44 0.0015 28.7 3.6 21 9-29 47-67 (83)
76 1deb_A APC protein, adenomatou 28.4 56 0.0019 25.6 3.7 20 13-32 8-27 (54)
77 1jnm_A Proto-oncogene C-JUN; B 27.8 22 0.00076 28.3 1.4 26 6-31 34-59 (62)
78 2ns9_A Hypothetical protein AP 27.3 3E+02 0.01 23.7 12.3 28 214-241 18-45 (157)
79 3ggn_A Uncharacterized protein 27.1 3.3E+02 0.011 24.1 12.8 117 213-358 8-125 (155)
80 1wlq_A Geminin; coiled-coil; 2 27.1 90 0.0031 26.7 5.1 19 55-73 50-68 (83)
81 1z94_A Conserved hypothetical 27.1 26 0.00088 30.3 1.9 26 462-487 7-32 (147)
82 1dh3_A Transcription factor CR 26.9 41 0.0014 26.3 2.8 22 51-72 30-51 (55)
83 1xn6_A Hypothetical protein BC 26.9 27 0.00091 30.6 2.0 28 460-487 10-37 (143)
84 2kew_A Uncharacterized protein 26.1 28 0.00096 31.1 2.0 28 460-487 12-39 (152)
85 2le1_A Uncharacterized protein 25.4 45 0.0015 29.5 3.2 28 460-487 4-31 (151)
86 3hnw_A Uncharacterized protein 25.3 77 0.0026 29.2 4.8 25 7-31 74-98 (138)
87 2jn6_A Protein CGL2762, transp 25.2 3.6 0.00012 34.6 -3.9 20 8-27 66-85 (97)
88 2lcg_A Uncharacterized protein 25.1 29 0.00099 30.5 1.9 26 461-486 4-29 (142)
89 2zxx_A Geminin; coiled-coil, c 25.0 40 0.0014 28.6 2.6 23 9-31 35-64 (79)
90 1uo4_A General control protein 24.9 52 0.0018 23.8 2.7 22 53-74 11-32 (34)
91 2oqq_A Transcription factor HY 24.3 80 0.0027 23.8 3.7 27 7-33 16-42 (42)
92 2jn6_A Protein CGL2762, transp 24.2 16 0.00054 30.5 -0.1 20 50-69 66-85 (97)
93 2oto_A M protein; helical coil 23.9 1.2E+02 0.0042 27.9 6.0 20 9-28 23-42 (155)
94 2l8o_A Uncharacterized protein 23.8 31 0.0011 30.6 1.8 26 461-486 5-30 (144)
95 2dgc_A Protein (GCN4); basic d 23.5 49 0.0017 26.6 2.7 23 51-73 38-60 (63)
96 2lgh_A Uncharacterized protein 23.1 31 0.0011 30.6 1.7 26 461-486 4-29 (144)
97 2w6b_A RHO guanine nucleotide 22.9 72 0.0025 25.3 3.4 22 10-31 12-33 (56)
98 3c3g_A Alpha/beta peptide with 22.8 64 0.0022 23.1 2.8 22 53-74 10-31 (33)
99 2wt7_B Transcription factor MA 22.8 1.5E+02 0.0051 25.7 5.8 43 15-78 48-90 (90)
100 3hnw_A Uncharacterized protein 22.1 1.4E+02 0.0047 27.5 5.8 12 55-66 122-133 (138)
101 1xn5_A BH1534 unknown conserve 21.9 36 0.0012 30.1 1.8 27 461-487 8-34 (146)
102 2lak_A AHSA1-like protein RHE_ 21.7 36 0.0012 30.5 1.8 27 460-486 11-37 (160)
103 1xuv_A Hypothetical protein MM 21.7 35 0.0012 31.3 1.8 26 461-486 25-50 (178)
104 3tvq_A Multifunctional cyclase 21.2 53 0.0018 30.6 2.9 29 460-488 5-33 (169)
105 1gd2_E Transcription factor PA 20.2 57 0.002 26.9 2.5 18 51-68 51-68 (70)
106 3s9g_A Protein hexim1; cyclin 20.1 67 0.0023 28.4 3.0 13 15-27 72-84 (104)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.7e-20 Score=182.22 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhC
Q 006356 150 SMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 229 (648)
Q Consensus 150 ~~l~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lm 229 (648)
..++++|++||+||+++++.+ ..|....+.. +.+.|.+.. .+....+.|..++|.+.+.+|++.||
T Consensus 22 ~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 22 SMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHHH
Confidence 889999999999999999754 7898743221 123332221 12234788999999999999999997
Q ss_pred C-----hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee--cccccccceeeEEEEeeeeecCceEEEEEEe
Q 006356 230 D-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 302 (648)
Q Consensus 230 D-----~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLVp~Re~~fLRyckql~~G~WaVvDvS 302 (648)
+ +.+|-..|. .++.++.++. .-.++| ++. .++++|++|||.++||+++.++|.|+|+..|
T Consensus 88 ~~d~~~r~~Wd~~~~----~~~vle~i~~--------~~~i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 88 PAVGGLRVKWDENVT----GFEIIQSITD--------TLCVSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp C--CCSHHHHCTTCS----EEEEEEECSS--------SEEEEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred hhCcchhhhhccccc----eeEEEEEcCC--------CEEEEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 7 889987744 4788887751 123344 333 4557999999999999999999999999999
Q ss_pred cccccCCCCCCCcccccccCCceeEeecC--CCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 006356 303 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 380 (648)
Q Consensus 303 ld~~~~~~~~~~~~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqcerl 380 (648)
++... .|..+.++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.+..++.+|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98432 22223689999999999999998 78999999999998765 55 67899999999999999999999854
No 2
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.26 E-value=1.3e-10 Score=114.52 Aligned_cols=196 Identities=11% Similarity=0.167 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCeeecCC--CCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHH-H
Q 006356 150 SMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-E 226 (648)
Q Consensus 150 ~~l~~lA~~Am~Ell~la~~~eplWi~~~~--~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LV-e 226 (648)
...++.+++|+++++++... .--|-...+ .| ..+ |.+..+. .|. .-|..++|...+..+. +
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~~ 84 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHHH
Confidence 45678899999999999863 347976422 23 111 3333321 121 3488899999999998 7
Q ss_pred HhCChh---hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecc--cccccceeeEEEEeeeeecCceEEEEEE
Q 006356 227 TLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDV 301 (648)
Q Consensus 227 ~lmD~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~--SPLVp~Re~~fLRyckql~~G~WaVvDv 301 (648)
+|.|.+ +|-.. +..++.++.++. ++ .+ +-++..+ .++++.|||.++|++++. ++.++|+-.
T Consensus 85 ~~~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~ 150 (229)
T 1em2_A 85 VILQPERMVLWNKT----VTACQILQRVED-------NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGI 150 (229)
T ss_dssp TTTCHHHHTTTCTT----EEEEEEEEEETT-------TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEE
T ss_pred HHhCccchhhcccc----cceEEEEEecCC-------Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEe
Confidence 776655 56554 234566666542 22 23 4456655 578999999999999997 566999999
Q ss_pred ecccccCCCCCCCcccccccCCceeEeecC--CCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHHH
Q 006356 302 SIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 379 (648)
Q Consensus 302 Sld~~~~~~~~~~~~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqcer 379 (648)
|++... .|..+.++|+...++|++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.-..+..|+.+|+.
T Consensus 151 Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~ 225 (229)
T 1em2_A 151 ATSHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISE 225 (229)
T ss_dssp ECCCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997432 22223689999999999999987 67899999999987764 55 5678777777777789999888875
Q ss_pred H
Q 006356 380 L 380 (648)
Q Consensus 380 l 380 (648)
+
T Consensus 226 ~ 226 (229)
T 1em2_A 226 L 226 (229)
T ss_dssp T
T ss_pred h
Confidence 4
No 3
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.25 E-value=2.6e-11 Score=121.59 Aligned_cols=172 Identities=15% Similarity=0.229 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHH-HHhCChhh
Q 006356 155 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 233 (648)
Q Consensus 155 lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LV-e~lmD~~~ 233 (648)
+++.++.|+++.+.....-|-...+.....| |.+.. +.|...-.-|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~-------~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKV-------GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECC-------CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEc-------CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 3446677777766544556977433210111 12211 12333345677888877777764 78999999
Q ss_pred hhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeee-ecCceEEEEEEecccccCCCCC
Q 006356 234 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 312 (648)
Q Consensus 234 W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckq-l~~G~WaVvDvSld~~~~~~~~ 312 (648)
|-..+ ..++.++.|+. .-.++|..+..|.| ++.|||.++||.++ +++|.++|+-.|++... .|..
T Consensus 101 Wd~~~----~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDEDF----VQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTTB----CCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhhh----ceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 98873 34677777652 23677888877766 79999999999986 78999999999998532 2322
Q ss_pred CCcccccccCCceeEeecCCCceEEEEEEeeeeccccccccc
Q 006356 313 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLY 354 (648)
Q Consensus 313 ~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ly 354 (648)
.++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~l 206 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWY 206 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTT
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHH
Confidence 589999999999999999999999999999987 4577665
No 4
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.25 E-value=7.7e-11 Score=115.81 Aligned_cols=193 Identities=15% Similarity=0.210 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeeec--CCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHh-
Q 006356 152 FLELALAAMDELVKMAQTDEPLWIRS--FEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 228 (648)
Q Consensus 152 l~~lA~~Am~Ell~la~~~eplWi~~--~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~l- 228 (648)
...+|++||+|++++.+ ++.-|... .+.| .. =|.+.++.. | -.=|..++|...+.++.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 36899999999999976 34579775 2333 11 233333211 2 34488999999999999998
Q ss_pred CC---hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee-cccccccceeeEEEEeeeeecCceEEEEEEecc
Q 006356 229 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 304 (648)
Q Consensus 229 mD---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld 304 (648)
+| +.+|-.. +..++.++.++. ++ .+.|.... .+.++++.|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGK-------DT-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSS-------SE-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCC-------Ce-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 46 4667765 233555555442 22 45664432 23568999999999999985 688999999987
Q ss_pred cccCCCCCCCcccccccCCceeEeecCCC--ceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 305 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 305 ~~~~~~~~~~~~r~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
... -|..+.++|+..+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 421 1222358999999999999999988 999999999988765 43 455666666667778999988887
No 5
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=99.07 E-value=1.5e-09 Score=105.12 Aligned_cols=151 Identities=16% Similarity=0.236 Sum_probs=118.0
Q ss_pred eeeeeeeEE-echhhHHHHhCC---hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEE
Q 006356 210 ASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 285 (648)
Q Consensus 210 ASR~~glV~-m~~~~LVe~lmD---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fL 285 (648)
.-|..++|. ..+..+.+.|+| +.+|... +...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568999995 999999999999 6677776 455566654 232 5789999999886 99999999
Q ss_pred Eeeeeec-Cc--eEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccch
Q 006356 286 RFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 362 (648)
Q Consensus 286 Ryckql~-~G--~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~ 362 (648)
|+++.++ +| .|+|+-.|++... .|..+.++|.+.+++|++|++..+|.|+||++-|++.. ..+|.- +++..+
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~ 192 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAA 192 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHH
T ss_pred EEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHH
Confidence 9999875 66 5999999987532 22223589999999999999999999999999999987 455543 344455
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 006356 363 GFGAQRWVATLQRQCECL 380 (648)
Q Consensus 363 afGA~RWlatLqRqcerl 380 (648)
.-++..++..|+++|+..
T Consensus 193 ~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 193 KNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HTHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 556778888888888743
No 6
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.97 E-value=6.5e-09 Score=102.54 Aligned_cols=191 Identities=11% Similarity=0.134 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeeecCC-CCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhC
Q 006356 151 MFLELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 229 (648)
Q Consensus 151 ~l~~lA~~Am~Ell~la~~~eplWi~~~~-~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lm 229 (648)
-+.+.+.++|.++..+. +.-|-...+ .| .+.|.+. ..+...-.-|..++|...+..|.+.|+
T Consensus 25 ~~~~~~~e~l~~~~~~~---~~~W~~~~~~~g----------v~vy~~~----~~~~~~~~~k~~~~v~~~~~~v~~~l~ 87 (224)
T 1jss_A 25 SISTKLQNTLIQYHSIE---EDEWRVAKKAKD----------VTVWRKP----SEEFNGYLYKAQGVMDDVVNNVIDHIR 87 (224)
T ss_dssp THHHHHHHHHHHHTTSC---GGGCEEEEEETT----------EEEEEEE----CSSSSSEEEEEEEEESSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhC---CCCCEEEEECCC----------EEEEEEe----ccCCCceEEEEEEEEeCCHHHHHHHHh
Confidence 35666666666665543 556976332 22 1222110 011122345888999999999999999
Q ss_pred Chh---hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecc-cccccceeeEEEEeeeeecCceEEEEEEeccc
Q 006356 230 DPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 305 (648)
Q Consensus 230 D~~---~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLVp~Re~~fLRyckql~~G~WaVvDvSld~ 305 (648)
|.. +|-..+ ..++.++.++ +.-.+.|.-+.-+ -|++..|||.++|+.++.++| ++|+-+|++.
T Consensus 88 d~~~r~~Wd~~~----~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~h 154 (224)
T 1jss_A 88 PGPWRLDWDRLM----TSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEW 154 (224)
T ss_dssp SSTTHHHHCSSE----EEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCC
T ss_pred Ccccccccccce----eeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeec
Confidence 965 787652 3355555543 2235666666543 457999999999999998877 7889999884
Q ss_pred ccCCCCCCCcccccccCCceeEeecCCC--ceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356 306 IRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378 (648)
Q Consensus 306 ~~~~~~~~~~~r~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce 378 (648)
.. . .+.++|++..++|++|+++++| .|+|||+-|++.--+ +| +.+++..+.-+...++..|+.+|+
T Consensus 155 p~--~-~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 155 SE--T-RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CC--C-CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC--C-CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 32 2 2358999999999999999875 899999999987654 44 356766666777788888877764
No 7
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.82 E-value=2.3e-08 Score=102.12 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=93.9
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccc--cccceeeEEEEeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 289 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--LVp~Re~~fLRyck 289 (648)
|..++|...+..|.+.|+|.+...+=-+. +..++.++-|+. + .++| ++..|+| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~-~~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKH-YRSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTT-CCEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhh-ccEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 88889999999999999987644333333 234566655552 1 4677 7777886 79999999999998
Q ss_pred e-ecCce-EEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeee
Q 006356 290 Q-HAEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEY 345 (648)
Q Consensus 290 q-l~~G~-WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~ 345 (648)
+ ..+|. ++|+-+|++... -|..+.++|+..+|+|++|+++++|.|+||++-|++-
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp 216 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP 216 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC
Confidence 7 44775 999999988432 2222358999999999999999999999999998873
No 8
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.70 E-value=2.4e-07 Score=88.26 Aligned_cols=152 Identities=14% Similarity=0.041 Sum_probs=109.9
Q ss_pred eeeeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeee
Q 006356 210 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 289 (648)
Q Consensus 210 ASR~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyck 289 (648)
.=|..++|...+.++.+.|+|.+...+--|. +...+||.. .. + -.++|.++..|-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~~----~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-TD----T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-CS----S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-cC----C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4688899999999999999997765555554 556667765 21 2 3567888887766 7899999999999
Q ss_pred eecCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHH
Q 006356 290 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 369 (648)
Q Consensus 290 ql~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RW 369 (648)
+..+|...|+=.+ +. ...|..+.++|++.+++|++|++ .+|.|+||++-|++..- .+|. -+++..+.-++-..
T Consensus 97 ~~~~g~~~i~~~~-~~-~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEA-VP-DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEE-CT-TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEc-CC-CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHH
Confidence 9888876554333 21 11122235799999999999999 99999999999998763 3443 33444555556677
Q ss_pred HHHHHHHHHH
Q 006356 370 VATLQRQCEC 379 (648)
Q Consensus 370 latLqRqcer 379 (648)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 8888887763
No 9
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.39 E-value=3.4e-06 Score=84.39 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=108.0
Q ss_pred eeeeeeEE-echhhHHHHhCC---hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEE
Q 006356 211 SRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLR 286 (648)
Q Consensus 211 SR~~glV~-m~~~~LVe~lmD---~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLR 286 (648)
=|..+.|. ..+..+.+.|+| +.+|-.. +..++.++.|.. ++ .+.|..+..|.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~----~~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETT----IENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCS----EEEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhh----cceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEE
Confidence 45566665 778999999999 4567665 344666666542 12 7889999998886 889999999
Q ss_pred eeeeec----C--ceEEEEEEecccccCCCCCCCcccccc---cCCceeEeecCC--------CceEEEEEEeeeecccc
Q 006356 287 FCKQHA----E--GVWAVVDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVTWVEHAEYDESQ 349 (648)
Q Consensus 287 yckql~----~--G~WaVvDvSld~~~~~~~~~~~~r~~r---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~ 349 (648)
+.++.. + +.|+|+..|++.-. .|..+.++|... +.+|++|++..+ +.|+|||+-|++.-- .
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~ 219 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-W 219 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-C
T ss_pred EEEeccccccCCCCEEEEEEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-c
Confidence 999883 3 59999999998532 122225789884 679999998733 579999999998764 3
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHH
Q 006356 350 VHQLYKPLIISGMGFGAQRWVATLQRQCECL 380 (648)
Q Consensus 350 vh~lyrpl~~Sg~afGA~RWlatLqRqcerl 380 (648)
+|.- +++.....+.-..+..|+++++..
T Consensus 220 iP~~---lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 220 APAS---VLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHH---HHHHHHhccccHHHHHHHHHHHHh
Confidence 4442 344555566777888888887754
No 10
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.38 E-value=0.011 Score=57.85 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=115.7
Q ss_pred hhhhhHHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhh-
Q 006356 399 GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL- 477 (648)
Q Consensus 399 ~GR~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FL- 477 (648)
..+..++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+. + |.+. ++..-+++||+.||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~---~-~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEF---P-GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSS---S-SEEE--EEEEEESSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCC---C-CcEE--EEEEEECCCHHHHHHHHH
Confidence 34445999999999888876533 4789987 3 357899998876322 2 3344 44455599999999999
Q ss_pred -hccccchhhhhhcCCCCcceeeecccCCCCCceEEEEE-eccC---C-CCCCceEEEEcccCCCCceEE-EEeeccccc
Q 006356 478 -RDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR-ASAI---N-ANQSSMLILQETCTDAAGSLV-VYAPVDIPA 550 (648)
Q Consensus 478 -Rde~~R~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr-~~~~---~-~~~~~mliLQesctd~sgS~v-VyAPVD~~~ 550 (648)
.|...|.+||.... ..+.+..|. .... |.+ +... . ....+..+|.-...+..|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 89999999996432 233333332 1222 333 2211 1 234566666654445567775 577787654
Q ss_pred hhhhhcCCCCCCc--cccCCCcEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh
Q 006356 551 MHVVMNGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET 628 (648)
Q Consensus 551 m~~vm~G~Dss~v--~LLPSGF~IlPdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t 628 (648)
+- ..+.+| .++|+||.|-|.... .++|.+|.-+|+=... .+...-|..
T Consensus 160 ~P-----~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~ 209 (231)
T 2r55_A 160 CP-----PKPGFVRGFNHPCGCFCEPLPGE---------------------PTKTNLVTFFHTDLSG----YLPQNVVDS 209 (231)
T ss_dssp SC-----CCTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCS----SCCHHHHHH
T ss_pred CC-----CCCCCEEEEEEeeEEEEEEeCCC---------------------CCcEEEEEEEEeCCCC----CccHHHHHH
Confidence 21 113333 588999999984210 1478888877764432 222111211
Q ss_pred -HhhhhhHHHHHHHHhhc
Q 006356 629 -VNNLISCTVQKIKAALQ 645 (648)
Q Consensus 629 -V~~li~~TVq~Ik~AL~ 645 (648)
+..-+-.++++++.++.
T Consensus 210 ~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 210 FFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHH
Confidence 22223347777777653
No 11
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=97.11 E-value=0.014 Score=55.05 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccchhhhhhcCCCCcceeeecccC
Q 006356 425 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 504 (648)
Q Consensus 425 ~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~Ia~G 504 (648)
++|... . ..++|+|..++.. |. | +..-++...++.||+.+|++|.|...|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~--~-~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GS--P-LREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA- 67 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TC--S-SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE-
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CC--C-eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee-
Confidence 589877 2 2578999998862 22 1 234566777899999999999999999999963 333333333
Q ss_pred CCCCceEEEEEeccC-CCCCCceEEEEcccCCCCceEEEEeeccccchhhhhcCCCCCC--ccccCCCcEEccCCCCCCC
Q 006356 505 QDHGNCVSLLRASAI-NANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDGPDSRG 581 (648)
Q Consensus 505 ~~~gN~VSllr~~~~-~~~~~~mliLQesctd~sgS~vVyAPVD~~~m~~vm~G~Dss~--v~LLPSGF~IlPdg~~~~~ 581 (648)
+.+..|.-...... .-...+..++.....+..|.+++..-.+-+. -...+.+ +..+++||.|-| |.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~-----~P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDY-----LPLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTS-----SCCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCc-----cCCCCCeEEeeEeeEEEEEEE-CC----
Confidence 33344433333322 1223355555543344446655433322111 0111233 456788888887 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh--HhhhhhHHHHHHHHhhc
Q 006356 582 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 645 (648)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t--V~~li~~TVq~Ik~AL~ 645 (648)
++|.+|.-+|+=.... .+..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS-----IPSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS-----SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688887777654432 2233322 23344457777777664
No 12
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.72 E-value=0.046 Score=53.21 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhh-hccc
Q 006356 403 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDER 481 (648)
Q Consensus 403 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FL-Rde~ 481 (648)
.-.++++.-+..+..-+. ..++|... . ...++|.|.+++. +|. |.+. ++..-+++||+.||++| .|..
T Consensus 11 ~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~~ 79 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERME 79 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhccc
Confidence 345555555555544443 35689977 2 1247788999884 332 4444 44555699999999999 5888
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEe--cc--CC-CCCCceEEEEcccCCCCceEEEE-eeccccchhhhh
Q 006356 482 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRA--SA--IN-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVM 555 (648)
Q Consensus 482 ~R~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~--~~--~~-~~~~~mliLQesctd~sgS~vVy-APVD~~~m~~vm 555 (648)
.|.+||.... ..+.+-++. .+.. |.+. .. .. ....+..++.-...+ .+.+++. -.|+-+.+
T Consensus 80 ~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~---- 146 (221)
T 3p0l_A 80 AMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNM---- 146 (221)
T ss_dssp GTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTS----
T ss_pred hhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCC----
Confidence 9999996331 233344442 2222 3332 11 11 234567766654444 3555554 44554432
Q ss_pred cCCCCCCc--cccCCCcEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHhH-hhh
Q 006356 556 NGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNL 632 (648)
Q Consensus 556 ~G~Dss~v--~LLPSGF~IlPdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~tV-~~l 632 (648)
...+.+| .++++||.|-|.+.. ..+|.+|.-+|+=... .+..--|..+ ..-
T Consensus 147 -P~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~ 200 (221)
T 3p0l_A 147 -PEQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKG----WLPKSIINQVLSQT 200 (221)
T ss_dssp -CCCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCS----SCCHHHHHHHHHHH
T ss_pred -CCCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCC----CCCHHHHHHHHHHH
Confidence 1123344 578999999884311 1368888877774432 2332233332 233
Q ss_pred hhHHHHHHHHhhc
Q 006356 633 ISCTVQKIKAALQ 645 (648)
Q Consensus 633 i~~TVq~Ik~AL~ 645 (648)
+-.+++.++.++.
T Consensus 201 ~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 201 QVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 3358888888876
No 13
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.61 E-value=0.029 Score=54.91 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHhhhccccc
Q 006356 404 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 483 (648)
Q Consensus 404 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~FLRde~~R 483 (648)
+.+.++..+..|.... ..+|... .. .++|+|..+...+. .|-+. +...-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-KK--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-EE--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-EE--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccc
Confidence 4444444444444322 5689876 32 47899999865322 23343 44555699999999999999999
Q ss_pred hhhhhhcCCCCcceeeecccCCCCCceEEEEEeccCC---CCCCceEEEEcccCCCCceEEEEeeccccchhhhhcCCCC
Q 006356 484 SEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDS 560 (648)
Q Consensus 484 ~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~~---~~~~~mliLQesctd~sgS~vVyAPVD~~~m~~vm~G~Ds 560 (648)
.+||.... ..+.+-+| +..+.|--......- ....+..++.....+..|.+++.-.||-+.+ .+
T Consensus 93 ~~Wd~~~~--~~~vle~i----d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~ 159 (224)
T 1jss_A 93 LDWDRLMT--SLDVLEHF----EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RP 159 (224)
T ss_dssp HHHCSSEE--EEEEEEEC----STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CT
T ss_pred ccccccee--eEEEEEEc----CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CC
Confidence 99996432 12333333 223344333332221 2445677776533445566666677776643 13
Q ss_pred CCc--cccCCCcEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHhH-hhhhhHHH
Q 006356 561 AYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTV 637 (648)
Q Consensus 561 s~v--~LLPSGF~IlPdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~tV-~~li~~TV 637 (648)
.+| ..+++||.|-|.... ..+|.+|.-+|+=.. ..+...-|.++ -..+-.++
T Consensus 160 g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~----G~iP~~lvn~~~~~~~~~~~ 214 (224)
T 1jss_A 160 EFVRGYNHPCGWFCVPLKDS---------------------PSQSLLTGYIQTDLR----GMIPQSAVDTAMASTLANFY 214 (224)
T ss_dssp TSEECEECSEEEEEEEETTE---------------------EEEEEEEEEECEECC----SCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecccEEEEEEcCCC---------------------CCceEEEEEEEeCCC----CCccHHHHHHHHHHhHHHHH
Confidence 444 478999999883211 135778765555433 22332223221 22233477
Q ss_pred HHHHHhhc
Q 006356 638 QKIKAALQ 645 (648)
Q Consensus 638 q~Ik~AL~ 645 (648)
+.++.++.
T Consensus 215 ~~Lr~~~~ 222 (224)
T 1jss_A 215 SDLRKGLR 222 (224)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 77776653
No 14
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.48 E-value=0.054 Score=51.89 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=98.3
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecc-cChhHHHHhhhccccchhhhhhcCCCCcceeeec
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 501 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLP-vpp~~vf~FLRde~~R~eWd~Ls~G~~vqe~~~I 501 (648)
...+|.... . .++|+|..++.. + ..+..-++..-++ +||+.||++|.|...|.+||.... +.--|
T Consensus 26 ~~~~W~~~~-~--~~~v~v~~~~~~---~---~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~-----~~~vl 91 (214)
T 1ln1_A 26 AGADWQLLV-E--TSGISIYRLLDK---K---TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVK-----ELYEQ 91 (214)
T ss_dssp TTTTCEEEE-E--ETTEEEEEEEET---T---TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEE-----EEEEE
T ss_pred CCCCcEEEE-E--CCCeEEEEeccC---C---CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHh-----hEEEe
Confidence 456899873 2 468999988752 2 1345667888898 999999999999999999996422 22112
Q ss_pred ccCCCCCceEEEEEeccCCC-CCCceEEEEcccC--CCCc--eE-EEEeeccccchhhhhcCCCCCC--ccccCCCcEEc
Q 006356 502 AKGQDHGNCVSLLRASAINA-NQSSMLILQETCT--DAAG--SL-VVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIV 573 (648)
Q Consensus 502 a~G~~~gN~VSllr~~~~~~-~~~~mliLQesct--d~sg--S~-vVyAPVD~~~m~~vm~G~Dss~--v~LLPSGF~Il 573 (648)
-. .|+.|.-......-+ ...+..++. ++. +..| .+ ++.-.|+-+.+ ...+.+ +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~-~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLR-QRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEE-EEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEE-EEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEe
Confidence 11 123333333332112 223555555 343 3344 23 44556665531 122444 45789999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh--HhhhhhHHHHHHHHhh
Q 006356 574 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 644 (648)
Q Consensus 574 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t--V~~li~~TVq~Ik~AL 644 (648)
|.+ .++|.+|.-.|+=.... .+..+.. +...+-.++++++.++
T Consensus 163 p~~-----------------------~~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~ 207 (214)
T 1ln1_A 163 SDG-----------------------KKGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARAC 207 (214)
T ss_dssp ECS-----------------------SSSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCC-----------------------CCceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 842 14688887777655432 2223221 3333445677777665
No 15
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.32 E-value=0.1 Score=50.98 Aligned_cols=196 Identities=9% Similarity=0.092 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHH-Hhhhcc
Q 006356 402 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 480 (648)
Q Consensus 402 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf-~FLRde 480 (648)
+.-++.++.....|-.-+. ...+|... .. ..++++|..+... +. |.+. +...-+++||+.|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~-~~----g~~~--k~~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVP-FH----GKTF--ILKTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEET-TT----EEEE--EEEEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecC-CC----CceE--EEEEEecCCHHHHHHHHHhCc
Confidence 3444444444444443332 34689877 22 2357899888652 12 3344 44444599999999 999999
Q ss_pred ccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC---C-CCCCceEEEEcccCCCCceEEEEeeccccchhhhhc
Q 006356 481 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN 556 (648)
Q Consensus 481 ~~R~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~---~-~~~~~mliLQesctd~sgS~vVyAPVD~~~m~~vm~ 556 (648)
..|.+||.... .++.+.+|. .++.| +..+... . ....+..++.-...+..+-.++...|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~~----~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRVE----DNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEET----TTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEecC----CCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999996432 123333432 22333 2222221 1 23456666665444444455556677666421
Q ss_pred CCCCCC--ccccCCCcEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhHHh-Hhhhh
Q 006356 557 GGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLI 633 (648)
Q Consensus 557 G~Dss~--v~LLPSGF~IlPdg~~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV~t-V~~li 633 (648)
..+.+ +.++++||.|-|.... .++|.+|.-+|+=... .+...-+.. +...+
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~l~n~~~~~~~ 212 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSASN---------------------PRVCTFVWILNTDLKG----RLPRYLIHQSLAATM 212 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSSC---------------------TTCEEEEEEECEECCS----SSCHHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCCC---------------------CCcEEEEEEEEECCCC----CCCHHHHHHHHHHHH
Confidence 11222 4578999999983211 1468888877764433 222221222 23344
Q ss_pred hHHHHHHHHhhc
Q 006356 634 SCTVQKIKAALQ 645 (648)
Q Consensus 634 ~~TVq~Ik~AL~ 645 (648)
-.+++.++.++.
T Consensus 213 ~~~~~~Lr~~~~ 224 (229)
T 1em2_A 213 FEFAFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777663
No 16
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.93 E-value=0.14 Score=50.94 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=99.8
Q ss_pred CCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHH-HHhhhccccchhhhhhcCCCCcceeeec
Q 006356 423 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILSNGGPMQEMAHI 501 (648)
Q Consensus 423 ~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~v-f~FLRde~~R~eWd~Ls~G~~vqe~~~I 501 (648)
...+|... . ..++|+|.+++.. +|.+ +-.-++..-++.+|+.+ +++|.| |.+||...- .++.+-.|
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETL 114 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEE
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEc
Confidence 45579877 3 3578999999852 2332 22446677778777665 567777 999997442 23444444
Q ss_pred ccCCCCCceEEEEEeccCCC-CCCceEEEEcccCC-CCceEEE-EeeccccchhhhhcCCCCCCccccCCCcEEccCCCC
Q 006356 502 AKGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPD 578 (648)
Q Consensus 502 a~G~~~gN~VSllr~~~~~~-~~~~mliLQesctd-~sgS~vV-yAPVD~~~m~~vm~G~Dss~v~LLPSGF~IlPdg~~ 578 (648)
. ..+.|--...+...+ ...+..++.-...| ..|++|| ...|+-+.+-.. | -=-+..+|+||.|-|.+.
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~--g--~VR~~~~~~g~~i~P~~~- 185 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLL--G--GVRAVVMDSQYLIEPCGS- 185 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCC--S--SEECCEEEEEEEEEECST-
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCC--C--cEEEEEeccEEEEEECCC-
Confidence 2 233444333332222 34566666643345 3576665 345655432111 1 013468899999999521
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhccCCccccCchhH-HhHhhhhhHHHHHHHHhhcc
Q 006356 579 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV-ETVNNLISCTVQKIKAALQC 646 (648)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~s~p~a~l~~eSV-~tV~~li~~TVq~Ik~AL~~ 646 (648)
++|.+|.-+|+=.... .+..+ ..+...+..++.++|.++..
T Consensus 186 ----------------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888777655432 12223 11334444688888888753
No 17
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.91 E-value=0.099 Score=45.11 Aligned_cols=141 Identities=8% Similarity=-0.078 Sum_probs=80.8
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeec
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 292 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~ 292 (648)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|.. ....+.. + +.+.-+..|+....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~--~~~~~~~--~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR--SRWVAVA--M--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE--EEEEEEE--T--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE--EEEEEEe--C--CceEEEEEEEEEcCC
Confidence 34566778899999999999999998874 4455665432 2321 1111222 2 223334455544322
Q ss_pred CceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHH
Q 006356 293 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 372 (648)
Q Consensus 293 ~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlat 372 (648)
+...+. . ..++ +. ..+.. -.-+++.++| |+|+|..+.+....-+..++.+++..-+.=+.++.+..
T Consensus 72 ~~~i~~-~-~~~g----~~-~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (147)
T 2d4r_A 72 NLRNRF-F-SPEG----DF-DRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKG 137 (147)
T ss_dssp TTEEEE-E-EEEE----SC-SEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccC----Ch-hheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1 1221 10 00111 1335677888 99999988887643444556666555555667888999
Q ss_pred HHHHHHHHH
Q 006356 373 LQRQCECLA 381 (648)
Q Consensus 373 LqRqcerla 381 (648)
|.+.+|+.+
T Consensus 138 lk~~~e~~~ 146 (147)
T 2d4r_A 138 LEERVLAAS 146 (147)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhc
Confidence 988888753
No 18
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.96 E-value=0.15 Score=51.76 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=90.8
Q ss_pred CchhhhhHHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEEEEEEEeecccChhHHHHh
Q 006356 397 TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNF 476 (648)
Q Consensus 397 ~~~GR~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VLsA~tS~wLPvpp~~vf~F 476 (648)
.++-+.+=+.|+.-.+.+...- ....+|... . ..++|+|.++.. +| .++-+...-+++||+.||++
T Consensus 41 ~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~-~--~~~gv~Vy~~~~---~~-----~l~~k~~~~v~~~~~~v~~~ 106 (258)
T 3fo5_A 41 VPWDPSNQVYLSYNNVSSLKML---VAKDNWVLS-S--EISQVRLYTLED---DK-----FLSFHMEMVVHVDAAQAFLL 106 (258)
T ss_dssp EECCGGGHHHHHHHHHHHHHHH---HTCSCCEEE-E--EETTEEEEEEEC---SS-----CEEEEEEEEESSCHHHHHHH
T ss_pred cccCcccceecccCCHHHHHhh---hccCCCEEE-e--cCCCeEEEEEEC---CC-----ceEEEEEEEEeCCHHHHHHH
Confidence 4466777777776666544422 256899976 3 257899998642 22 45567777789999999999
Q ss_pred hhccccchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC---CCC-CCceEEEEcccC-CCCce-EEEE-eecccc
Q 006356 477 LRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---NAN-QSSMLILQETCT-DAAGS-LVVY-APVDIP 549 (648)
Q Consensus 477 LRde~~R~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~---~~~-~~~mliLQesct-d~sgS-~vVy-APVD~~ 549 (648)
|.|...|.+||... ...+.+.+|.. .+.|- +.... ..- ..|..+|.-.-+ ...|. +||- -.|+-+
T Consensus 107 L~D~~~R~~WD~~~--~~~~vle~id~----~~ivY--~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp 178 (258)
T 3fo5_A 107 LSDLRQRPEWDKHY--RSVELVQQVDE----DDAIY--HVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLP 178 (258)
T ss_dssp HHCGGGGGGTCTTC--CEEEEEEEEET----TEEEE--EEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECT
T ss_pred HhCchhHhHhhhhc--cEEEEEEEcCC----CeEEE--EEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCC
Confidence 99999999999632 12334444421 13332 33221 112 235555554223 23453 5443 345443
Q ss_pred chhhhhcCCCCCCc--cccCCCcEEccCC
Q 006356 550 AMHVVMNGGDSAYV--ALLPSGFAIVPDG 576 (648)
Q Consensus 550 ~m~~vm~G~Dss~v--~LLPSGF~IlPdg 576 (648)
.+ ..-+.+| ..+|+||.|-|.|
T Consensus 179 ~~-----Pp~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 179 TH-----RETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp TS-----CCCTTSEECCCSSEEEEEEEEE
T ss_pred CC-----CCCCCCEEEEEcCcEEEEEECC
Confidence 32 1123444 6899999999954
No 19
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=93.23 E-value=0.027 Score=57.22 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH
Q 006356 13 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 67 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~ 67 (648)
|++||++||.||..|++.+ .+.++|+.||+|||+.|+
T Consensus 24 l~~eN~~Lk~e~~~l~~~~------------------~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE------------------SEVADLKKENKDLKESLD 60 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 5556666666666665544 245568899999998875
No 20
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=92.23 E-value=2 Score=39.79 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=71.5
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 291 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql 291 (648)
..+-+|.-.+..+-+.+-|.++|-+.+|. +..++++..+. +. +.+++.+.-. ..++-|.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~-----~~---~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQ-----GY---QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEET-----TE---EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCC-----CE---EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 45567778899999999999999999999 56677776432 11 3344443222 22343444444333
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCce-eEeecCCCceEEEEEEeeeeccccccccccccc
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGC-VVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 358 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGc-lIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 358 (648)
++.. +.. ..++. +++ |. .+ .|. -+++.++|.|+|+|.-++++....+..++.++.
T Consensus 74 ~~~~-i~~-~~~~~--~gp----f~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~ 129 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--API----VG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKL 129 (172)
T ss_dssp TTTE-EEE-EEEEC--CTT----EE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTB
T ss_pred CCCE-EEE-EEeeC--CCC----hh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhcccc
Confidence 2222 111 11110 111 10 00 122 256667789999999999998877777777665
No 21
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=91.91 E-value=2.8 Score=39.09 Aligned_cols=141 Identities=8% Similarity=0.021 Sum_probs=78.9
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee--cccccccceeeEEEEeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 289 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLVp~Re~~fLRyck 289 (648)
..+.+|.-.+.++-+.+-|.++|-+.||. |...+|++.+. . .+.+.+. +-.- - .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~~------~--~~~~rl~~~~~~~-G-~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRDD------D--KVTFRLTMHPDAD-G-KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEECS------S--EEEEEEEECCCTT-S-CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecCC------C--EEEEEEEEEeccC-c-eEEEEEEEEEE
Confidence 45667778899999999999999999998 67778887541 1 1344433 3221 1 34444566643
Q ss_pred eecCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHH
Q 006356 290 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 369 (648)
Q Consensus 290 ql~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RW 369 (648)
. .++..+ +..+ ..++| | +.+=...-..+.++ +|+|+|.-+.++++.....+ +.+...+-=..+.-
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~ 136 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQ 136 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHH
Confidence 3 233222 2221 11222 2 22223344677777 49999999999876521111 00111111112334
Q ss_pred HHHHHHHHHHHH
Q 006356 370 VATLQRQCECLA 381 (648)
Q Consensus 370 latLqRqcerla 381 (648)
|+.|.+.+|+.+
T Consensus 137 L~~lK~~~E~~~ 148 (159)
T 3tl1_A 137 MALIRDRIEQAA 148 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 777777777665
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.16 E-value=0.38 Score=41.20 Aligned_cols=52 Identities=31% Similarity=0.525 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHH----HHhhhhccc
Q 006356 11 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 76 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~----r~~~~~~k~ 76 (648)
.+|+-|.+.||.+|..+.+....+ .-.-..|+.||++||+|.. |+.++++|.
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~--------------~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNA--------------QHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666665555443110 0122349999999999986 666766653
No 23
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=90.03 E-value=1.1 Score=40.09 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=82.1
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 291 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql 291 (648)
+.+..|...+..+-+.+.|.++|-+.+|.+ +.++|++.+..|. |. -+.+++.+-- -+.++-|..|+..+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~~--~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVGF--SFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECST--TSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEEe--cceeEEEEEEEEEcC
Confidence 345677788999999999999999999994 5556666433221 11 2455565522 355666777887543
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHH
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 371 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWla 371 (648)
.+ ..|.-.++++ +.. .+...++ +++.++| |+|++.-++|.... ++..+...-+.--+++.+.
T Consensus 75 ~~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~ 136 (148)
T 1t17_A 75 DA--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLIA 136 (148)
T ss_dssp TT--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHHH
Confidence 33 2233333332 210 0122222 4567778 99999988887522 2333332222334567777
Q ss_pred HHHHHHHHH
Q 006356 372 TLQRQCECL 380 (648)
Q Consensus 372 tLqRqcerl 380 (648)
++.+.++.+
T Consensus 137 ~f~~r~~~~ 145 (148)
T 1t17_A 137 CFEARAQQL 145 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 24
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=89.61 E-value=5.7 Score=37.38 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=77.8
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 291 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql 291 (648)
..+.+|.-.+.++-+.+-|.++|-+.||. |...++++.+. +. ..+...+++..--. .++|..-|.. -
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~----~~~~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSE----YAEAEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTT----EEEEEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhh----eeEEEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 44566777888999999999999999999 46666776432 11 11222222322221 2233333321 1
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHH
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 371 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWla 371 (648)
.++..+.... ..++| | +.+=...-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..|+
T Consensus 73 ~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~ 138 (169)
T 3tvq_A 73 KGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANME 138 (169)
T ss_dssp GGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHH
Confidence 2222221111 11112 2 122234556788888 9999999999875421 1111122222212344688
Q ss_pred HHHHHHHHHHH
Q 006356 372 TLQRQCECLAI 382 (648)
Q Consensus 372 tLqRqcerla~ 382 (648)
.|.+.+|+.+.
T Consensus 139 ~LK~~aE~~~~ 149 (169)
T 3tvq_A 139 RIKKIIEDRHR 149 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhh
Confidence 88888888774
No 25
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=89.46 E-value=6.8 Score=38.55 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhccccccCCCCceeccCCCCCCceEEEEecCCCCCCCCCccEE-EEEEEeecc-cChhHHHHhhhccc
Q 006356 404 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 481 (648)
Q Consensus 404 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~rks~~~~g~p~G~VL-sA~tS~wLP-vpp~~vf~FLRde~ 481 (648)
+-++.+..++.+-..+ ....+|... . ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444555555544433 234689977 3 25789999988632 2 3221 123344556 99999999999999
Q ss_pred cchhhhhhcCCCCcceeeecccCCCCCceEEEEEeccC-CCCCCceEEEEcccCC----CC---ceEEEEeeccccchhh
Q 006356 482 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTD----AA---GSLVVYAPVDIPAMHV 553 (648)
Q Consensus 482 ~R~eWd~Ls~G~~vqe~~~Ia~G~~~gN~VSllr~~~~-~~~~~~mliLQesctd----~s---gS~vVyAPVD~~~m~~ 553 (648)
.|.+||...- ..+.+-+|. .++.|--...+.. --...+..++.....+ .. +-+++.-.++-+..
T Consensus 98 ~r~~Wd~~~~--~~~vle~i~----~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~-- 169 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETLA----DNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSA-- 169 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEEE----TTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTS--
T ss_pred hHhhhhhhcc--eeEEEEEcC----CCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCC--
Confidence 9999996321 122232321 1222333333221 1234566666643222 22 23444445654431
Q ss_pred hhcCCCCCCcc-----ccCCCcEEccC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeehhhc
Q 006356 554 VMNGGDSAYVA-----LLPSGFAIVPD-GP-DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 614 (648)
Q Consensus 554 vm~G~Dss~v~-----LLPSGF~IlPd-g~-~~~~~~~~~~~~~~~~~~~~~~~~GSLLTvaFQil~~ 614 (648)
...+.+|- .|.+||.|.|. |. ... . ..++|.+|.-.|+=..
T Consensus 170 ---P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~---------------~--~~~~t~vt~~~~~Dp~ 217 (255)
T 2e3n_A 170 ---PLNNRCVRAKINVAMICQTLVSPPEGNQEIS---------------R--DNILCKITYVANVNPG 217 (255)
T ss_dssp ---CCCSSSEECEEEEEEEEEEEEC---CCCCCC---------------G--GGEEEEEEEEEEEECS
T ss_pred ---CCCCCCEEEEEEeeeeeeeEeccCCCCcccc---------------c--CCCcEEEEEEEEeCCC
Confidence 11122232 36788888883 22 110 0 1257888888777554
No 26
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=83.09 E-value=16 Score=33.41 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=79.1
Q ss_pred eeeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeee
Q 006356 212 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 291 (648)
Q Consensus 212 R~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql 291 (648)
..+.+|.-.+..+-+.+.|.++|...||..+.- +-.. +|..+.+.+++.+-. ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDLG-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEEE-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEcC-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 345677888999999999999999999986543 1111 233344445555433 234888889987654
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHH
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 371 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWla 371 (648)
++. .+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|.. ..+..++..+...-+--.+++.+.
T Consensus 77 ~~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~ 143 (161)
T 3p9v_A 77 EAG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVD 143 (161)
T ss_dssp TTT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 22 22222 122 10 1111123457788888999999888876 123333333332222223456655
Q ss_pred HHHHH
Q 006356 372 TLQRQ 376 (648)
Q Consensus 372 tLqRq 376 (648)
+..+-
T Consensus 144 af~~r 148 (161)
T 3p9v_A 144 TYMAN 148 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 27
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.36 E-value=1.2 Score=30.03 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=14.4
Q ss_pred HHHHHhhhhhHHHHHHH
Q 006356 53 QHLRIENARLKDELDRV 69 (648)
Q Consensus 53 q~Lr~ENArLk~El~r~ 69 (648)
.+|+..|||||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 46889999999998755
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.85 E-value=8 Score=34.27 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCCCc-cCC---CChHHHHHHHhhhhhHHHHHHHhhhhccc
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRNPI---CTNCGGPAI-IGD---ISLEEQHLRIENARLKDELDRVCALAGKF 76 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~---C~~CGgp~~-~~~---~~~eeq~Lr~ENArLk~El~r~~~~~~k~ 76 (648)
|.+-..|+.||++||.++..|.-.|-+.. ..+|-.--+ +-- .+...|+...+=..|++|++|+...+.+.
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666655555554431 333321111 111 12355666677777888888877766554
No 29
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.12 E-value=3.8 Score=32.23 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal 31 (648)
.||..||++++.|+++|..++..+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 30
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=71.50 E-value=55 Score=29.05 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=62.9
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEE--EEeeeee
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 291 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~f--LRyckql 291 (648)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++.. |. ....+.+. .-|.+.-+. .+|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~-------~~---~~~~~~~~--~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGE-------DK---YKADLQIG--IAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEET-------TE---EEEEEEEC--CGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCC-------Ce---EEEEEEEE--eeeEEEEEEEEEEEEecC
Confidence 4457778899999999999999989874 55666642 11 12222221 112222222 2444434
Q ss_pred cCceEEEEEEecccccCCCCCCCcccccccCCceeEeecCCCceEEEEEEeeeeccccccccccccc
Q 006356 292 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 358 (648)
Q Consensus 292 ~~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~ 358 (648)
....|++.-..-+. .+ +.+. ---+-+.+..+|.|+|+|--.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 44555443332221 00 1111 011335666778899999877776432 344455554
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.34 E-value=3.4 Score=36.14 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCc
Q 006356 33 NPICTNCGGPAI 44 (648)
Q Consensus 33 n~~C~~CGgp~~ 44 (648)
.-.||-||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346999999764
No 32
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=66.77 E-value=16 Score=27.73 Aligned_cols=45 Identities=29% Similarity=0.445 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
+-|.-||....+|+..|..+. -+||.|-.-=|.|+||+.|+..-+
T Consensus 3 arnaylrkkiarlkkdnlqle---------------------rdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 3 ARNAYLRKKIARLKKDNLQLE---------------------RDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhhhhhhh---------------------hhHhhHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999998774 378888777788999998886543
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=65.18 E-value=5.2 Score=31.45 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSIRDA 30 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lrea 30 (648)
|--.||+||+.||.++..|++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444433
No 34
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.90 E-value=16 Score=28.55 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHh
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 70 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~ 70 (648)
++....|+++|+.|-+-|.+|-+++ ++-|.|=.+||+|+|++.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L---------------------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhh
Confidence 4556679999999999999999988 347788889999999874
No 35
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=64.03 E-value=3.4 Score=41.78 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=17.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDA 30 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lrea 30 (648)
-+.||..||+||++|+.++.++++.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999988877666666554
No 36
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.46 E-value=7.7 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 5 LERHENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 5 ~eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
--|-.|...+++.|.|+..|..|.+.++
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998775
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=63.11 E-value=5.8 Score=40.39 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhh
Q 006356 11 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~ 71 (648)
..|+.+++.|.+.|.+|++++ +++|.|..+||+|++++..
T Consensus 57 ~eL~~ql~~L~arNe~L~~~L---------------------k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcC
Confidence 357777777777777777766 4588899999999999865
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.02 E-value=15 Score=29.47 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHH
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 66 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El 66 (648)
+.+...|..+.+.|..||..|+..+ .+|+.|++.||+-+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 3455667777778888887777655 45777777777655
No 39
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.92 E-value=7 Score=28.07 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.7
Q ss_pred HHHHHHhhhhhHHHHHHHhhhhc
Q 006356 52 EQHLRIENARLKDELDRVCALAG 74 (648)
Q Consensus 52 eq~Lr~ENArLk~El~r~~~~~~ 74 (648)
...|..||..|++|+.|+.+++.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 34699999999999999998764
No 40
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=59.50 E-value=12 Score=33.70 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 006356 12 LLRQENDKLRAENMSIRDAMRNPICTNCG 40 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lreal~n~~C~~CG 40 (648)
.|-+|..||+-||..||..+++. +.|+
T Consensus 12 eLaaeL~kLqmENK~LKkkl~~~--g~~~ 38 (110)
T 2oa5_A 12 EMVKEVERLKLENKTLKQKVKSS--GAVS 38 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCC
Confidence 58899999999999999999874 5664
No 41
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.16 E-value=3.3 Score=36.62 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHH
Q 006356 11 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 69 (648)
Q Consensus 11 ~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~ 69 (648)
-.|-...+++..||.++|..-+.. | +-..+...+..+||.||.+|+.|-+.-
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667788888888888773322 1 222344567889999999999997643
No 42
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.30 E-value=22 Score=28.19 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 006356 9 ENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal 31 (648)
....|..+.+.|..||..|++.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666544
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.72 E-value=5 Score=33.32 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMS 26 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~ 26 (648)
||..||.+++.|+.||..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.04 E-value=16 Score=39.27 Aligned_cols=24 Identities=33% Similarity=0.230 Sum_probs=20.1
Q ss_pred ChHHHHHHHhhhhhHHHHHHHhhh
Q 006356 49 SLEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 49 ~~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
+-++++|+.||+|||.|++.+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhh
Confidence 568999999999999998876544
No 45
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=49.15 E-value=11 Score=35.03 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 006356 459 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 459 sA~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
+...|+-+..||+.||+|++|...-.+|.-
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999985
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.52 E-value=15 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 9 ENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
||..||++.+.|+.|...||+.+.
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 47
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=46.28 E-value=9.7 Score=32.29 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=25.4
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
...+..++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 35678899999999999999999999963
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.42 E-value=19 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal 31 (648)
-..+|..|+.|...|+.|+..|++-+
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999999999999999998765
No 49
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.37 E-value=12 Score=31.70 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
..||..|++|.+.|+.|...||+.|.
T Consensus 49 ~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777777777777776554
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.23 E-value=20 Score=28.82 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 4 QLERHENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 4 q~eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
+.-..+|..|+.+.+.|+.|+..||+-|.
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456999999999999999999998763
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.25 E-value=12 Score=29.35 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=12.8
Q ss_pred HHHHhhhhhHHHHHHHhhhhcc
Q 006356 54 HLRIENARLKDELDRVCALAGK 75 (648)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~~~k 75 (648)
-||.||..||.||+-=+..++|
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lsk 35 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHH
Confidence 4666666666666654444443
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.53 E-value=41 Score=28.92 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=6.9
Q ss_pred hhHHHHHHHhhhhcc
Q 006356 61 RLKDELDRVCALAGK 75 (648)
Q Consensus 61 rLk~El~r~~~~~~k 75 (648)
.|+.|++++..+...
T Consensus 61 ~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 61 QLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 53
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=41.39 E-value=11 Score=33.85 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.4
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
...++.+|.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 54
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=40.88 E-value=12 Score=32.98 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhh
Q 006356 459 SAATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 459 sA~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 46678899999999999999999999996
No 55
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=40.02 E-value=1e+02 Score=28.43 Aligned_cols=112 Identities=12% Similarity=0.159 Sum_probs=60.2
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeec
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 292 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~ 292 (648)
.+..|...+.++-++|.|-..| +-+|.++..+. ++ .|.+|+.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e---~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCK---KV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEE---EE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEE---EE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 4456667889999999999999 88998864333 33 35444445787665 1 1 2233 2333321100
Q ss_pred CceEEEEEEecccccCCCCCCCcccccccCCceeEeecC-CCceEEEEEEeeeecc
Q 006356 293 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDE 347 (648)
Q Consensus 293 ~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~-nG~skVtwVeH~e~d~ 347 (648)
-=+|-|++-.+- .. .+ ..+..=+=.-+.+.+ +|.|.|+|-=.++..+
T Consensus 71 ~~sY~ii~g~l~----~~-~~---~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPSP----VS-SG---EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECSTT----SS-TT---TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCCc----cc-cc---ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 114555542110 00 00 011111222345555 7899999998888764
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.60 E-value=11 Score=33.42 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006356 12 LLRQENDKLRAENMSIR 28 (648)
Q Consensus 12 ~Lr~ENekLr~EN~~lr 28 (648)
.||.|.|.|+.||.+||
T Consensus 16 ~lr~ei~~Le~E~~rLr 32 (100)
T 1go4_E 16 TLRLKVEELEGERSRLE 32 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 57
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.35 E-value=52 Score=28.20 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHhhhhhHHHHHHHhhhhc
Q 006356 55 LRIENARLKDELDRVCALAG 74 (648)
Q Consensus 55 Lr~ENArLk~El~r~~~~~~ 74 (648)
|..|++.||+|++++..++.
T Consensus 58 l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 58 KDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888877764
No 58
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.18 E-value=24 Score=25.73 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 006356 19 KLRAENMSIRD 29 (648)
Q Consensus 19 kLr~EN~~lre 29 (648)
+||.||..++|
T Consensus 25 ~Lk~eN~eL~E 35 (37)
T 1t6f_A 25 RLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHhhHHHHh
Confidence 45555554443
No 59
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.02 E-value=16 Score=44.19 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhh
Q 006356 8 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~ 72 (648)
.|...|+.|.+++..|+..+.+++.... .++.-...+|..||+.|+++++.+...
T Consensus 991 ~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777664332 122234457999999999999888754
No 60
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=36.40 E-value=20 Score=32.36 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.6
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhhh
Q 006356 459 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 459 sA~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
....|+.++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788999999999999999999999963
No 61
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=35.18 E-value=24 Score=30.35 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.3
Q ss_pred EEEEEeecccChhHHHHhhhccccchhh
Q 006356 459 SAATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 459 sA~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
....+..++.||++||++|.|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457888999999999999999999999
No 62
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=35.15 E-value=18 Score=32.07 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.6
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
...|..+|.||+.||+++.|-.+..+|--
T Consensus 4 ~~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 4 HVVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 35688999999999999999999999864
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.00 E-value=78 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHH
Q 006356 8 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 66 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El 66 (648)
.....|.++-+.|..||..|++.+ +.|+.|.+.|+.-+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei---------------------~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEI---------------------ANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 345667788888888888888766 34667777776654
No 64
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=32.67 E-value=26 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEEeecccChhHHHHhhhccccchhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 65
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=32.38 E-value=26 Score=31.01 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999993
No 66
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.18 E-value=42 Score=27.92 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
+.++..|+.|.+.|+.||..|+..+..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888877777654
No 67
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=32.16 E-value=42 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~ 32 (648)
-+.++..|.+|++.|+.||..|+..|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888888888887764
No 68
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.86 E-value=52 Score=26.04 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 006356 10 NSLLRQENDKLRAENMSIRDA 30 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lrea 30 (648)
...|..+-+.|..||..|+..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655543
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.70 E-value=1e+02 Score=27.84 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=39.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChH-----HHHHHHhhhhhHHHHHHHhh
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLE-----EQHLRIENARLKDELDRVCA 71 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~e-----eq~Lr~ENArLk~El~r~~~ 71 (648)
-+.|...||.|+++|+.|..++-..|++-+ ..-+-.++ .|+.+.||-+||.|++.+..
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i--------~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHV--------SELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888889999999888888777775421 11111223 34567889999999987544
No 70
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=30.18 E-value=32 Score=33.02 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc---------CCCCCCCCCC
Q 006356 10 NSLLRQENDKLRAENMSIRDAMR---------NPICTNCGGP 42 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal~---------n~~C~~CGgp 42 (648)
+..||++.++++.||+ +++.. ...||.||+.
T Consensus 107 s~elk~~~e~~~~e~l--~~~~~~~~~~~~t~~~~Cp~C~~~ 146 (178)
T 3po3_S 107 PAPLKQKIEEIAKQNL--YNAQGATIERSVTDRFTCGKCKEK 146 (178)
T ss_dssp CSHHHHHHHHHHHHHH--HHTBCCCCCCCCBSSSCCSSSCCS
T ss_pred CHHHHHHHHHHHHHHH--HHhhhccccCCCcCCcCCCCCCCC
Confidence 4578999999988874 44422 1259999974
No 71
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.78 E-value=39 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHhhhhhHHHHHHHhhhhc
Q 006356 53 QHLRIENARLKDELDRVCALAG 74 (648)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (648)
..|..||.-|++|.+|+.+++.
T Consensus 11 EeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhHHHHHHHHHHHHh
Confidence 3588999999999999988764
No 72
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=29.77 E-value=31 Score=31.62 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=26.5
Q ss_pred EEEEEeecccChhHHHHhhhccccchhhh
Q 006356 459 SAATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 459 sA~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 46688999999999999999999999995
No 73
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.73 E-value=75 Score=26.99 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=13.4
Q ss_pred HHHHhhhhhHHHHHHHhhhh
Q 006356 54 HLRIENARLKDELDRVCALA 73 (648)
Q Consensus 54 ~Lr~ENArLk~El~r~~~~~ 73 (648)
+|+.||..||+-++.+..++
T Consensus 52 ~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 52 RLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47777777777776665543
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.61 E-value=36 Score=29.05 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMS 26 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~ 26 (648)
|...||.+|..|..||..
T Consensus 28 EieELKekN~~L~~e~~e 45 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.34 E-value=44 Score=28.66 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSIRD 29 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lre 29 (648)
||..|..+++.|+.|+..+|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666544443
No 76
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.38 E-value=56 Score=25.59 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 006356 13 LRQENDKLRAENMSIRDAMR 32 (648)
Q Consensus 13 Lr~ENekLr~EN~~lreal~ 32 (648)
|-.+-|-||.||-.+|..++
T Consensus 8 L~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44455666666666666664
No 77
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.77 E-value=22 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 6 ERHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 6 eR~eN~~Lr~ENekLr~EN~~lreal 31 (648)
-..+|..|+.|.+.|+.|+..|+..+
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888887777654
No 78
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=27.26 E-value=3e+02 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.2
Q ss_pred eeeEEechhhHHHHhCChhhhhhhcccc
Q 006356 214 TGMVIINSLALVETLMDPNRWAEMFPCM 241 (648)
Q Consensus 214 ~glV~m~~~~LVe~lmD~~~W~~~Fp~I 241 (648)
+..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 18 ~~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 18 SFEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 3455667889999999999999999974
No 79
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=27.13 E-value=3.3e+02 Score=24.09 Aligned_cols=117 Identities=7% Similarity=-0.054 Sum_probs=58.7
Q ss_pred eeeeEEechhhHHHHhCChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeec
Q 006356 213 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 292 (648)
Q Consensus 213 ~~glV~m~~~~LVe~lmD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~ 292 (648)
.+..|...+.++-+.+.|.+.|-+.+|.+ ..++++.. +... +.++ + |.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~-------~~~~-~~~~--~--~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDD-------KRSR-WTVE--A--PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSS-------SEEE-EEEE--C--CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecC-------CeeE-EEEE--e--cCCcceEEEEEEEEEecC
Confidence 44567778899999999999999998874 45566542 1111 1222 2 221244455677776555
Q ss_pred CceEEEEEEecccccCCCCCCCcccccccCCceeEeecC-CCceEEEEEEeeeeccccccccccccc
Q 006356 293 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDESQVHQLYKPLI 358 (648)
Q Consensus 293 ~G~WaVvDvSld~~~~~~~~~~~~r~~rlPSGclIq~~~-nG~skVtwVeH~e~d~~~vh~lyrpl~ 358 (648)
+... +-.+.++. ... ... -+-.++.+ +|.|+|++.-+.+....-+-.++-+++
T Consensus 72 ~~~i--~~~~~~g~----~~~-~~g------~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~ 125 (155)
T 3ggn_A 72 GKRI--AWRSLPGA----RIE-NSG------EVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMF 125 (155)
T ss_dssp TTEE--EEEECTTC----SSC-EEE------EEEEEECSSSSCEEEEEEEEEC--------------
T ss_pred CCEE--EEEECCCC----Ccc-eEE------EEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHh
Confidence 4432 23333331 000 111 12246774 568999997766654333344444443
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.11 E-value=90 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=9.6
Q ss_pred HHHhhhhhHHHHHHHhhhh
Q 006356 55 LRIENARLKDELDRVCALA 73 (648)
Q Consensus 55 Lr~ENArLk~El~r~~~~~ 73 (648)
++.|-++||+|.+++..+|
T Consensus 50 ~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 50 KDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444
No 81
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=27.06 E-value=26 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.3
Q ss_pred EEeecccChhHHHHhhhccccchhhh
Q 006356 462 TSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 462 tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999994
No 82
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.89 E-value=41 Score=26.34 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhHHHHHHHhhh
Q 006356 51 EEQHLRIENARLKDELDRVCAL 72 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~~ 72 (648)
...+|..||+.|++|++.+...
T Consensus 30 ~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999887653
No 83
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=26.87 E-value=27 Score=30.62 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=25.1
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
...+..++.||++||+.|-|..+..+|-
T Consensus 10 i~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 10 IKQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 3467888999999999999999999996
No 84
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=26.06 E-value=28 Score=31.14 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=25.0
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
...+..++.||++||++|-|..+..+|-
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~ 39 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKWF 39 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHhc
Confidence 3567889999999999999999999993
No 85
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=25.43 E-value=45 Score=29.46 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.6
Q ss_pred EEEEeecccChhHHHHhhhccccchhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
...|+-++.||.+||++|.|-.+-.+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567889999999999999988888995
No 86
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.28 E-value=77 Score=29.24 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal 31 (648)
+.++..|+++.+.+..|...|++-+
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=25.17 E-value=3.6 Score=34.59 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 006356 8 HENSLLRQENDKLRAENMSI 27 (648)
Q Consensus 8 ~eN~~Lr~ENekLr~EN~~l 27 (648)
.|+..|++||..|+.||.-+
T Consensus 66 ~ei~~L~~e~~~L~~e~~~L 85 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHP 85 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 88
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=25.12 E-value=29 Score=30.47 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=23.8
Q ss_pred EEEeecccChhHHHHhhhccccchhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
..+.-++.||++||++|-|..+..+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 45778899999999999999999999
No 89
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.01 E-value=40 Score=28.64 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=14.9
Q ss_pred hhhHHHHHHH-------HHHHHHHHHHHHh
Q 006356 9 ENSLLRQEND-------KLRAENMSIRDAM 31 (648)
Q Consensus 9 eN~~Lr~ENe-------kLr~EN~~lreal 31 (648)
||..|..+.+ +|+.||..+++..
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877776 5555555555443
No 90
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.86 E-value=52 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.0
Q ss_pred HHHHHhhhhhHHHHHHHhhhhc
Q 006356 53 QHLRIENARLKDELDRVCALAG 74 (648)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (648)
..|..+|..|.+|+.|+..++.
T Consensus 11 EeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 11 EEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHc
Confidence 4589999999999999988764
No 91
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.29 E-value=80 Score=23.81 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 006356 7 RHENSLLRQENDKLRAENMSIRDAMRN 33 (648)
Q Consensus 7 R~eN~~Lr~ENekLr~EN~~lreal~n 33 (648)
-+-|+.|..-.-.|..||.-||+-++|
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 346788888888899999999988765
No 92
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.18 E-value=16 Score=30.51 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=14.5
Q ss_pred hHHHHHHHhhhhhHHHHHHH
Q 006356 50 LEEQHLRIENARLKDELDRV 69 (648)
Q Consensus 50 ~eeq~Lr~ENArLk~El~r~ 69 (648)
-|..+|+.||++||.|++-+
T Consensus 66 ~ei~~L~~e~~~L~~e~~~L 85 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHP 85 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888887544
No 93
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.89 E-value=1.2e+02 Score=27.91 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 006356 9 ENSLLRQENDKLRAENMSIR 28 (648)
Q Consensus 9 eN~~Lr~ENekLr~EN~~lr 28 (648)
.|..|+.||++|+.||..+.
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~ 42 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAM 42 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777664
No 94
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}
Probab=23.77 E-value=31 Score=30.60 Aligned_cols=26 Identities=8% Similarity=0.317 Sum_probs=23.5
Q ss_pred EEEeecccChhHHHHhhhccccchhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
..+.-++.||++||+.|-|+.+..+|
T Consensus 5 ~~~~~i~Ap~e~Vw~altdpe~~~~W 30 (144)
T 2l8o_A 5 TVEVTVYAAIEKVWKYWNEPAHIMKW 30 (144)
T ss_dssp EEEEEECSCHHHHHHHHHCHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHCCHHHHhhc
Confidence 35667899999999999999999999
No 95
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.53 E-value=49 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhh
Q 006356 51 EEQHLRIENARLKDELDRVCALA 73 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r~~~~~ 73 (648)
+..+|..||+.|+.|++++...+
T Consensus 38 ~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888776543
No 96
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}
Probab=23.09 E-value=31 Score=30.60 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=23.7
Q ss_pred EEEeecccChhHHHHhhhccccchhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
..+..++.||++||+.|-|+.+..+|
T Consensus 4 ~~~~~i~Ap~e~Vw~altdp~~~~~W 29 (144)
T 2lgh_A 4 SIEAHIEQEIEAVWWAWNDPDCIARW 29 (144)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTS
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcc
Confidence 45678899999999999999999999
No 97
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.89 E-value=72 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 006356 10 NSLLRQENDKLRAENMSIRDAM 31 (648)
Q Consensus 10 N~~Lr~ENekLr~EN~~lreal 31 (648)
=+.||-|-..|+.||..|+.+|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999998
No 98
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.83 E-value=64 Score=23.13 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHhhhhhHHHHHHHhhhhc
Q 006356 53 QHLRIENARLKDELDRVCALAG 74 (648)
Q Consensus 53 q~Lr~ENArLk~El~r~~~~~~ 74 (648)
..|..||..|.+|+.|+.+++.
T Consensus 10 EeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 10 XEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 3588999999999999988764
No 99
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.76 E-value=1.5e+02 Score=25.70 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCChHHHHHHHhhhhhHHHHHHHhhhhccccC
Q 006356 15 QENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLG 78 (648)
Q Consensus 15 ~ENekLr~EN~~lreal~n~~C~~CGgp~~~~~~~~eeq~Lr~ENArLk~El~r~~~~~~k~~g 78 (648)
++.+.|..||..++..+ ++|+.||++++.|+|.+..-...+.|
T Consensus 48 ~q~~~LE~e~~~L~~e~---------------------~~L~~e~~~~~~e~d~~k~k~~~L~~ 90 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQV---------------------EQLKQEVSRLARERDAYKVKSEKLAN 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhcC
No 100
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.14 E-value=1.4e+02 Score=27.54 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=4.8
Q ss_pred HHHhhhhhHHHH
Q 006356 55 LRIENARLKDEL 66 (648)
Q Consensus 55 Lr~ENArLk~El 66 (648)
|..++++|..|+
T Consensus 122 l~~~~~~le~~~ 133 (138)
T 3hnw_A 122 YQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 101
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5
Probab=21.86 E-value=36 Score=30.15 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=24.4
Q ss_pred EEEeecccChhHHHHhhhccccchhhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEWD 487 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eWd 487 (648)
..+..++.||++||+.|-|..+..+|-
T Consensus 8 ~~~~~i~Ap~e~Vw~altd~~~~~~W~ 34 (146)
T 1xn5_A 8 KKEVRFNAPIEKVWEAVSTSEGLAFWF 34 (146)
T ss_dssp EEEEEESSCHHHHHHHTTSHHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhChhHHHHhc
Confidence 467788999999999999999999993
No 102
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}
Probab=21.70 E-value=36 Score=30.50 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=24.5
Q ss_pred EEEEeecccChhHHHHhhhccccchhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
...+..++.||++||++|-|.....+|
T Consensus 11 i~~~~~i~Ap~e~Vw~altdp~~~~~W 37 (160)
T 2lak_A 11 VRREAHLAAPPAAVFALMTDPEKILRW 37 (160)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHHHT
T ss_pred EEEEEEeCCCHHHHHHHhcChHHHhhh
Confidence 456788899999999999999999999
No 103
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5
Probab=21.68 E-value=35 Score=31.33 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=23.4
Q ss_pred EEEeecccChhHHHHhhhccccchhh
Q 006356 461 ATSVWLPVSPQRLFNFLRDERLRSEW 486 (648)
Q Consensus 461 ~tS~wLPvpp~~vf~FLRde~~R~eW 486 (648)
..+.-++.||++||++|-|+.+..+|
T Consensus 25 ~~~r~i~Ap~e~Vw~altdpe~~~~W 50 (178)
T 1xuv_A 25 IITREFDAPRELVFKAFTDPDLYTQW 50 (178)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTT
T ss_pred EEEEEECCCHHHHHHHhCCHHHHHhC
Confidence 34558899999999999999999999
No 104
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=21.15 E-value=53 Score=30.64 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=26.5
Q ss_pred EEEEeecccChhHHHHhhhccccchhhhh
Q 006356 460 AATSVWLPVSPQRLFNFLRDERLRSEWDI 488 (648)
Q Consensus 460 A~tS~wLPvpp~~vf~FLRde~~R~eWd~ 488 (648)
...|+.++.||+.||+++.|-.+..+|--
T Consensus 5 v~~si~I~a~~~~v~~lv~Dv~~~p~w~p 33 (169)
T 3tvq_A 5 TDNSIVVNAPFELVWDVTNDIEAWPELFS 33 (169)
T ss_dssp EEEEEEESSCHHHHHHHHTCGGGHHHHCT
T ss_pred EEEEEEecCCHHHHHHHHHhhhHHHHHHh
Confidence 56789999999999999999999999974
No 105
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.22 E-value=57 Score=26.94 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhhHHHHHH
Q 006356 51 EEQHLRIENARLKDELDR 68 (648)
Q Consensus 51 eeq~Lr~ENArLk~El~r 68 (648)
|.+.||.++.+|..|+..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666666654
No 106
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.09 E-value=67 Score=28.41 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 006356 15 QENDKLRAENMSI 27 (648)
Q Consensus 15 ~ENekLr~EN~~l 27 (648)
.|.++||.||.+|
T Consensus 72 ~everL~~ENq~L 84 (104)
T 3s9g_A 72 LELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554443
Done!