BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006358
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ETP|B Chain B, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 333
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 251 EFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGL 310
E +Y P+L S DC + + + Y D+ LN ++ +I L T L
Sbjct: 91 EHVYKFNRVIPHLKVSEDCFFTQEYSVYHDM----ALNQKKNFNLISLSTTPHGSLRESL 146
Query: 311 VPFCCRNGTI 320
+ F TI
Sbjct: 147 IKFLAEKDTI 156
>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|E Chain E, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|F Chain F, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|G Chain G, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|H Chain H, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|I Chain I, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|J Chain J, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
Length = 216
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 261 PYLADSSDCI---YG----PQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVP- 312
P LAD++ + YG +G R L + R TI DLP + D L LV
Sbjct: 119 PLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEA 178
Query: 313 --FCCRNGTILPPSMDPSKST 331
+ +NGT+LP + P +T
Sbjct: 179 FQWTDKNGTVLPCNWTPGAAT 199
>pdb|1AH0|A Chain A, Pig Aldose Reductase Complexed With Sorbinil
Length = 316
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 293 PTIIDLPPTKA-----NDTTLG-LVPF-CCRNGTILPPSMDPSKSTSVFQLQVFKMPPDL 345
P++++ P KA N TT L+ F RN ++P S+ P + FQ+ F++ P+
Sbjct: 226 PSLLEDPRIKAIAAKYNKTTAQVLIRFPMQRNLIVIPKSVTPERIAENFQVFDFELSPED 285
Query: 346 NRSELTPPQNWKI 358
+ L+ +NW++
Sbjct: 286 MNTLLSYNRNWRV 298
>pdb|1DLA|A Chain A, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|B Chain B, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|C Chain C, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|D Chain D, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
Length = 314
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 293 PTIIDLPPTKA-----NDTTLG-LVPF-CCRNGTILPPSMDPSKSTSVFQLQVFKMPPDL 345
P++++ P KA N TT L+ F RN ++P S+ P + FQ+ F++ P+
Sbjct: 224 PSLLEDPRIKAIAAKYNKTTAQVLIRFPMQRNLIVIPKSVTPERIAENFQVFDFELSPED 283
Query: 346 NRSELTPPQNWKI 358
+ L+ +NW++
Sbjct: 284 MNTLLSYNRNWRV 296
>pdb|1EKO|A Chain A, Pig Aldose Reductase Complexed With Idd384 Inhibitor
pdb|1AH3|A Chain A, Aldose Reductase Complexed With Tolrestat Inhibitor
pdb|1AH4|A Chain A, Pig Aldose Reductase, Holo Form
Length = 315
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 293 PTIIDLPPTKA-----NDTTLG-LVPF-CCRNGTILPPSMDPSKSTSVFQLQVFKMPPDL 345
P++++ P KA N TT L+ F RN ++P S+ P + FQ+ F++ P+
Sbjct: 225 PSLLEDPRIKAIAAKYNKTTAQVLIRFPMQRNLIVIPKSVTPERIAENFQVFDFELSPED 284
Query: 346 NRSELTPPQNWKI 358
+ L+ +NW++
Sbjct: 285 MNTLLSYNRNWRV 297
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 595 NVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNT 626
+VP+ D +P VF G++C P PT DG T
Sbjct: 9 SVPICDLYPNGVFPKGQECEYP---PTQDGRT 37
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 595 NVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNT 626
+VP+ D +P VF G++C P PT DG T
Sbjct: 8 SVPICDLYPNGVFPKGQECEYP---PTQDGRT 36
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 595 NVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNT 626
+VP+ D +P VF G++C P PT DG T
Sbjct: 117 SVPICDLYPNGVFPKGQECEYP---PTQDGRT 145
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 595 NVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNT 626
+VP+ D +P VF G++C P PT DG T
Sbjct: 117 SVPICDLYPNGVFPKGQECEYP---PTQDGRT 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,417,598
Number of Sequences: 62578
Number of extensions: 900716
Number of successful extensions: 1891
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1888
Number of HSP's gapped (non-prelim): 9
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)