Query 006358
Match_columns 648
No_of_seqs 125 out of 150
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 22:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04833 COBRA: COBRA-like pro 100.0 4.6E-79 1E-83 579.3 17.7 167 223-403 1-169 (169)
2 PF00553 CBM_2: Cellulose bind 95.1 0.083 1.8E-06 46.7 7.2 53 210-263 2-54 (101)
3 PF04833 COBRA: COBRA-like pro 94.7 0.13 2.9E-06 50.8 8.0 104 63-178 1-143 (169)
4 PF00553 CBM_2: Cellulose bind 84.5 1.6 3.5E-05 38.7 4.6 40 61-100 13-52 (101)
5 smart00637 CBD_II CBD_II domai 71.2 6.1 0.00013 34.1 4.1 39 62-100 7-45 (92)
6 smart00637 CBD_II CBD_II domai 69.0 10 0.00022 32.8 5.0 43 220-263 5-47 (92)
7 PF10563 CdCA1: Cadmium carbon 41.7 5.7 0.00012 41.0 -1.3 17 484-500 5-21 (218)
8 PF03128 CXCXC: CXCXC repeat; 34.9 19 0.00041 22.6 0.7 8 427-434 7-14 (14)
9 PF07131 DUF1382: Protein of u 25.1 26 0.00056 30.1 0.2 22 120-141 5-26 (61)
10 COG5341 Uncharacterized protei 23.2 59 0.0013 31.6 2.2 41 574-615 43-83 (132)
11 PF03173 CHB_HEX: Putative car 21.5 1.3E+02 0.0028 29.9 4.2 94 59-168 28-123 (164)
12 PF08140 Cuticle_1: Crustacean 21.2 71 0.0015 25.5 1.9 22 84-105 13-37 (40)
No 1
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=100.00 E-value=4.6e-79 Score=579.33 Aligned_cols=167 Identities=45% Similarity=0.919 Sum_probs=159.0
Q ss_pred eEEEEEEeccCccCCCC--CceeeeeEcCCeeeEEecCceeeecCCCCCcCCCCCcccccCCCCccccccCCCeEeeCCC
Q 006358 223 YWAQVTVANHNPIGRLD--NWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPP 300 (648)
Q Consensus 223 Y~A~VTi~N~q~yr~id--gW~L~W~W~~~E~IwsM~GA~~te~dqgdCs~g~~g~~yk~~dfs~ph~C~k~P~IvDLpP 300 (648)
|+|+|||+|||+||||| ||+|||+|+|+||||+|+|||++| ||||+ +||+++ ++||||+|+|+||||||
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~td--qgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp 71 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTD--QGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP 71 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceecc--CCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence 99999999999999999 599999999999999999999995 89995 577764 56789999999999999
Q ss_pred CCCCCccCCccCccccCceecCCCCCCCCCcceEEEEEeecCCCCCCCccCCCCCeEEcCCCCCCcccCCCeeeCCCccC
Q 006358 301 TKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFP 380 (648)
Q Consensus 301 ~~~~d~q~g~i~nCCr~GvL~p~~qDps~s~SaFQm~Vgk~pp~~Nrt~v~pP~Nf~l~gp~gPgYtCG~p~~V~Pt~f~ 380 (648)
|++||+|+ +||||||||+||+|||+||+|+|||+||++||++|+++++||+||+|++| ||||+||+|++|+||+|+
T Consensus 72 ~~~~n~qi---~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~-~pgYtCg~~~~V~pT~f~ 147 (169)
T PF04833_consen 72 GTPYNQQI---GNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGP-GPGYTCGPPKRVSPTVFP 147 (169)
T ss_pred CCCCcccc---ccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCC-CCCcCCCCcceeCCceee
Confidence 99999995 58999999999999999999999999999999998888999999999996 999999999999999999
Q ss_pred CCCCCCceeeEeeEEeeeeeeec
Q 006358 381 DPSGGPANRTAFASWQVVCNITR 403 (648)
Q Consensus 381 dpdgl~r~tqAl~TWqVtCnySq 403 (648)
|+|| ||+|||||||||||||||
T Consensus 148 ~~~g-~r~t~A~~TWqvtC~ysq 169 (169)
T PF04833_consen 148 DPDG-RRTTQALMTWQVTCNYSQ 169 (169)
T ss_pred CCCC-CEEEEEEEEEeEEEEeeC
Confidence 9999 999999999999999997
No 2
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=95.10 E-value=0.083 Score=46.75 Aligned_cols=53 Identities=21% Similarity=0.421 Sum_probs=47.8
Q ss_pred EEEEEEEEeeCCCeEEEEEEeccCccCCCCCceeeeeEcCCeeeEEecCceeee
Q 006358 210 TIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYL 263 (648)
Q Consensus 210 TI~wDV~q~~~~~Y~A~VTi~N~q~yr~idgW~L~W~W~~~E~IwsM~GA~~te 263 (648)
+++|.|.+--++||.+.|+|.|... ..|++|+|.|+-..++-|-++.+|..+.
T Consensus 2 tv~~~v~~~W~~Gf~~~v~v~N~~~-~~i~~W~v~~~~~~~~~i~~~Wna~~s~ 54 (101)
T PF00553_consen 2 TVTYTVTNSWGGGFQGEVTVTNNGS-SPINGWTVTFTFPSGQTITSSWNATVSQ 54 (101)
T ss_dssp EEEEEEEEESSSEEEEEEEEEESSS-STEESEEEEEEESTTEEEEEEESCEEEE
T ss_pred EEEEEEecccCCCeEEEEEEEECCC-CccCCEEEEEEeCCCCEEeeeeccEEEe
Confidence 6889999888999999999999887 5778999999999889998999998765
No 3
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=94.65 E-value=0.13 Score=50.80 Aligned_cols=104 Identities=20% Similarity=0.363 Sum_probs=68.6
Q ss_pred eeeeeEEeec-Ccccccc--eeEeeeeccceEEEecCceeecCCC---------CcCe-------------e------cc
Q 006358 63 FESTLTVLNN-GLEQLKQ--WRAFVGFQHEEILVSASNAVLFDGN---------SFPA-------------S------VG 111 (648)
Q Consensus 63 F~s~~tv~N~-g~~~lk~--W~~~v~F~h~EiLVsa~gavl~dg~---------~~P~-------------~------v~ 111 (648)
|-|.+||.|. -++.|++ |++.-..+.+|||-|--||--.|-. ++|- . ++
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~tdqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~ 80 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTDQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIG 80 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceeccCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccc
Confidence 4588899885 4678888 9999999999999999999877644 3332 1 12
Q ss_pred ----CCcEEecCChhhhhhHHhhcCcccceEEEEEEeeeee--ccCCCCCCCCcceeecC--CCccCCcccccCC
Q 006358 112 ----NGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQF--GVGLRDVPMPKNISLAN--DGFLCSPVTRQGK 178 (648)
Q Consensus 112 ----ngt~~~g~p~~dLktai~TAgd~~qiq~~i~l~GT~F--gv~~p~~PmP~~i~l~n--~gy~Cp~~~~~~~ 178 (648)
|||..+ ...|.. +-.+.++|.==.+ |.....+.+|++.+|.. +||+|.++.+...
T Consensus 81 nCCrgG~l~~--~~~Dps----------~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~~pgYtCg~~~~V~p 143 (169)
T PF04833_consen 81 NCCRGGVLSS--WAQDPS----------KSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGPGPGYTCGPPKRVSP 143 (169)
T ss_pred cccCCCEECC--cccChh----------hCceEEEEEEeEeeccCCCceecCCcceEEcCCCCCcCCCCcceeCC
Confidence 333322 233333 3333343321122 22334578999999976 9999999988664
No 4
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=84.49 E-value=1.6 Score=38.69 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=34.3
Q ss_pred ceeeeeeEEeecCcccccceeEeeeeccceEEEecCceee
Q 006358 61 YRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVL 100 (648)
Q Consensus 61 y~F~s~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl 100 (648)
-.|.+.++|.|+|.+.+++|+|-+.|.+.+-|.++=+|-+
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~ 52 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATV 52 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEE
Confidence 4699999999999999999999999997777777755443
No 5
>smart00637 CBD_II CBD_II domain.
Probab=71.17 E-value=6.1 Score=34.12 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=33.0
Q ss_pred eeeeeeEEeecCcccccceeEeeeeccceEEEecCceee
Q 006358 62 RFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVL 100 (648)
Q Consensus 62 ~F~s~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl 100 (648)
.|.++++|.|+|...+.+|++-+.|.+.+-+.+.-++-+
T Consensus 7 G~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~ 45 (92)
T smart00637 7 GFTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATV 45 (92)
T ss_pred CEEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEE
Confidence 389999999999999999999999988776667666554
No 6
>smart00637 CBD_II CBD_II domain.
Probab=69.00 E-value=10 Score=32.77 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCCeEEEEEEeccCccCCCCCceeeeeEcCCeeeEEecCceeee
Q 006358 220 DSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYL 263 (648)
Q Consensus 220 ~~~Y~A~VTi~N~q~yr~idgW~L~W~W~~~E~IwsM~GA~~te 263 (648)
.+||.+.|+|.|..-. .|++|.+.|+...++-|-++..|....
T Consensus 5 ~~G~~~~v~vtN~~~~-~~~~W~v~~~~~~~~~i~~~Wn~~~~~ 47 (92)
T smart00637 5 GSGFTANVTVTNTGSS-AINGWTVTFDLPGGQTVTNSWNATVSQ 47 (92)
T ss_pred CCCEEEEEEEEeCCCC-cccCeEEEEEcCCCcEEeeeEEEEEEe
Confidence 5699999999997553 488999999998888787888877654
No 7
>PF10563 CdCA1: Cadmium carbonic anhydrase repeat; InterPro: IPR018883 This entry represents the cadmium-binding carbonic anhydrase domain of marine diatoms []. The prevalence of carbonic anhydrase in diatoms that contain Cd at their active site probably reflects the very low concentration of Zn in the marine environment and the difficulty in acquiring inorganic carbon for photosynthesis. Compared with alpha- and gamma-carbonic anhydrases that use three histidines to coordinate the zinc-atom, this beta-carbonic anhydrase has two cysteines and one histidine, and rapidly binds cadmium []. ; PDB: 3BOH_A 3BOJ_A 3BOC_A 3BOE_A 3BOB_A.
Probab=41.68 E-value=5.7 Score=41.04 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=8.6
Q ss_pred CCCceeEEEEEeeCCCC
Q 006358 484 DNCGVSINWHLHTDYSR 500 (648)
Q Consensus 484 dmCpV~IhWHVk~nYk~ 500 (648)
.||||+||||+-.-...
T Consensus 5 ~mc~vnvhwHlgaEh~s 21 (218)
T PF10563_consen 5 SMCPVNVHWHLGAEHYS 21 (218)
T ss_dssp EEEECGGG------CCC
T ss_pred eeeeeeeecccccchhh
Confidence 59999999999874443
No 8
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=34.95 E-value=19 Score=22.61 Aligned_cols=8 Identities=50% Similarity=1.493 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 006358 427 KTCACGCK 434 (648)
Q Consensus 427 ~tCACGC~ 434 (648)
.||+|+|+
T Consensus 7 ~tC~C~Cp 14 (14)
T PF03128_consen 7 DTCQCECP 14 (14)
T ss_pred CCcCccCC
Confidence 36999994
No 9
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.15 E-value=26 Score=30.07 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.6
Q ss_pred ChhhhhhHHhhcCcccceEEEE
Q 006358 120 PMSDLKTAVMTAGDLTQMQVQV 141 (648)
Q Consensus 120 p~~dLktai~TAgd~~qiq~~i 141 (648)
.+.||+.+||+|--|+|+-.++
T Consensus 5 sPv~LR~~lE~A~~La~~GIRF 26 (61)
T PF07131_consen 5 SPVDLRKALEMAHSLAHIGIRF 26 (61)
T ss_pred cHHHHHHHHHHHHHHHHcCcee
Confidence 3567999999999999875444
No 10
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.24 E-value=59 Score=31.57 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=34.8
Q ss_pred CCCCCcccEEEEEeecCCCCCcccCCCcCcceeeecCCcccC
Q 006358 574 PRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSL 615 (648)
Q Consensus 574 ~~v~GkvQSeilf~K~~t~~ft~~~GwaFP~rVyFNGeEC~m 615 (648)
-+|.|++=-++.++|.. .+|++.+-+||=-+|-|.|+|=+.
T Consensus 43 i~v~Gk~~r~i~l~Kg~-~t~~v~~~~g~~n~vev~g~~IRV 83 (132)
T COG5341 43 ISVDGKVIRTIPLTKGN-ETFDVKENGGFYNKVEVKGNRIRV 83 (132)
T ss_pred EEECCEEEEEEEcccCC-ccEEEEcCCCceEEEEEcCCEEEE
Confidence 35678988899999865 799999999999999999986543
No 11
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=21.53 E-value=1.3e+02 Score=29.87 Aligned_cols=94 Identities=28% Similarity=0.434 Sum_probs=44.1
Q ss_pred CcceeeeeeEEeecCcccccc--eeEeeeeccceEEEecCceeecCCCCcCeeccCCcEEecCChhhhhhHHhhcCcccc
Q 006358 59 QAYRFESTLTVLNNGLEQLKQ--WRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQ 136 (648)
Q Consensus 59 Qpy~F~s~~tv~N~g~~~lk~--W~~~v~F~h~EiLVsa~gavl~dg~~~P~~v~ngt~~~g~p~~dLktai~TAgd~~q 136 (648)
-...|++.+|+.|.|...+.. |+++..+. |.|+-.-+ | .|=..-=||--+-=.|-.+.+- | -||+
T Consensus 28 ~~~c~~~~ltl~n~~~~~~~~~dW~IYf~~i-r~i~~~~s-----~--~f~i~hinGDl~kl~Pt~~F~g-l-~~Ge--- 94 (164)
T PF03173_consen 28 WASCFRAELTLTNPGDAPLPKSDWAIYFSSI-RPILQVDS-----D--QFKITHINGDLHKLTPTAGFKG-L-APGE--- 94 (164)
T ss_dssp GG-EEEEEEEEEE-SS-B------EEEEE-S-S-EEEESS-----T--TEEEEE-STTEEEEEE-TT----B--TTE---
T ss_pred cccceEEEEEEEcCCCccCCCCCeEEEEecc-eeeeccCC-----C--CeEEEEEcCeEEEEeECCCCCc-c-CCCC---
Confidence 378899999999999988765 99999976 66763211 1 2222333665544444333210 0 1333
Q ss_pred eEEEEEEeeeeeccCCCCCCCCcceeecCCCc
Q 006358 137 MQVQVKIVGTQFGVGLRDVPMPKNISLANDGF 168 (648)
Q Consensus 137 iq~~i~l~GT~Fgv~~p~~PmP~~i~l~n~gy 168 (648)
+.+|.++|..+-+..-.+ ||... ++-+|-
T Consensus 95 -s~~I~~~~~~w~~~~tD~-mp~~Y-v~~~~~ 123 (164)
T PF03173_consen 95 -SLEIPFVGEYWQVSETDA-MPGWY-VVADGL 123 (164)
T ss_dssp -EEEEEEEEES---SGGGS-----E-EE-TTS
T ss_pred -EEEEEEEccccEEEEccC-CCceE-EEeCCC
Confidence 568888998888876444 66654 344433
No 12
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=21.16 E-value=71 Score=25.52 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=17.4
Q ss_pred eeeccce---EEEecCceeecCCCC
Q 006358 84 VGFQHEE---ILVSASNAVLFDGNS 105 (648)
Q Consensus 84 v~F~h~E---iLVsa~gavl~dg~~ 105 (648)
+-|.|.| +|+.-+|+||.||+.
T Consensus 13 ~q~~~~~a~ivl~GpSG~v~sdG~n 37 (40)
T PF08140_consen 13 VQFPHGVANIVLIGPSGAVLSDGKN 37 (40)
T ss_pred EECCcccceEEEECCceEEeeCCcE
Confidence 4566776 778889999999974
Done!