Query 006360
Match_columns 648
No_of_seqs 551 out of 2991
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 22:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4378 Nuclear protein COP1 [ 100.0 5.6E-58 1.2E-62 479.4 37.3 542 1-647 128-672 (673)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-28 1.7E-32 250.0 16.0 202 1-219 182-385 (459)
3 KOG0272 U4/U6 small nuclear ri 99.9 7.7E-28 1.7E-32 250.0 14.1 201 2-219 225-428 (459)
4 KOG0263 Transcription initiati 99.9 4.4E-27 9.5E-32 260.2 18.1 196 1-214 458-654 (707)
5 KOG0271 Notchless-like WD40 re 99.9 1.3E-26 2.7E-31 238.2 18.2 282 1-344 122-440 (480)
6 KOG0279 G protein beta subunit 99.9 1.4E-25 3.1E-30 223.1 21.0 198 2-219 71-272 (315)
7 KOG0271 Notchless-like WD40 re 99.9 5.7E-26 1.2E-30 233.4 16.5 207 1-212 164-442 (480)
8 KOG0286 G-protein beta subunit 99.9 6.4E-24 1.4E-28 212.4 22.2 197 1-214 104-308 (343)
9 KOG0266 WD40 repeat-containing 99.9 9.5E-24 2.1E-28 235.1 24.3 201 1-217 166-372 (456)
10 KOG0284 Polyadenylation factor 99.9 8.1E-25 1.8E-29 226.7 10.1 191 2-209 146-337 (464)
11 KOG0273 Beta-transducin family 99.9 3.1E-23 6.8E-28 218.1 20.9 199 1-217 242-490 (524)
12 KOG0263 Transcription initiati 99.9 1.2E-23 2.6E-28 233.1 18.2 196 2-215 386-613 (707)
13 KOG0279 G protein beta subunit 99.9 7.3E-23 1.6E-27 203.8 20.5 190 6-213 28-226 (315)
14 KOG0285 Pleiotropic regulator 99.9 4.2E-23 9.2E-28 210.9 19.0 206 1-212 158-392 (460)
15 KOG0265 U5 snRNP-specific prot 99.9 5.2E-23 1.1E-27 206.6 18.5 198 1-216 54-253 (338)
16 KOG0266 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 223.8 24.2 202 1-217 210-417 (456)
17 KOG0315 G-protein beta subunit 99.9 3.3E-22 7.1E-27 196.4 21.0 200 7-211 11-247 (311)
18 KOG0286 G-protein beta subunit 99.9 4.8E-22 1E-26 199.0 22.5 197 2-216 63-266 (343)
19 KOG0315 G-protein beta subunit 99.9 4.6E-22 1E-26 195.3 21.1 196 1-213 90-292 (311)
20 KOG0277 Peroxisomal targeting 99.9 1.2E-22 2.6E-27 199.9 16.5 194 1-209 67-265 (311)
21 KOG0284 Polyadenylation factor 99.9 5.7E-23 1.2E-27 213.0 13.7 191 1-208 187-379 (464)
22 KOG1272 WD40-repeat-containing 99.9 8.4E-24 1.8E-28 222.1 7.5 250 2-288 137-394 (545)
23 PTZ00421 coronin; Provisional 99.9 2.6E-21 5.7E-26 216.3 28.0 199 1-213 82-294 (493)
24 KOG0291 WD40-repeat-containing 99.9 6.5E-22 1.4E-26 217.5 22.3 197 1-215 357-556 (893)
25 KOG0291 WD40-repeat-containing 99.9 4.7E-22 1E-26 218.5 21.1 193 1-211 314-510 (893)
26 KOG0295 WD40 repeat-containing 99.9 4.6E-22 9.9E-27 204.0 19.4 190 2-209 201-406 (406)
27 KOG0276 Vesicle coat complex C 99.9 3.7E-22 8E-27 215.5 18.9 197 4-217 65-265 (794)
28 KOG0645 WD40 repeat protein [G 99.9 2.8E-21 6.1E-26 191.9 23.7 196 1-209 21-225 (312)
29 KOG0310 Conserved WD40 repeat- 99.9 2E-22 4.4E-27 213.1 16.0 205 2-223 76-282 (487)
30 KOG0316 Conserved WD40 repeat- 99.9 1.3E-21 2.8E-26 190.9 19.6 202 2-213 25-261 (307)
31 KOG0283 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 218.2 19.9 171 2-178 275-512 (712)
32 PLN00181 protein SPA1-RELATED; 99.9 8.3E-21 1.8E-25 225.3 27.1 192 1-210 490-691 (793)
33 KOG0273 Beta-transducin family 99.9 4.7E-21 1E-25 201.8 21.5 189 2-209 284-523 (524)
34 PTZ00420 coronin; Provisional 99.9 2.2E-20 4.9E-25 210.5 28.3 196 1-211 81-295 (568)
35 KOG0295 WD40 repeat-containing 99.9 1.3E-21 2.9E-26 200.6 15.6 200 1-218 157-373 (406)
36 cd00200 WD40 WD40 domain, foun 99.9 3.6E-20 7.7E-25 185.3 24.8 189 1-207 100-289 (289)
37 cd00200 WD40 WD40 domain, foun 99.9 4.7E-20 1E-24 184.4 25.6 195 1-213 16-211 (289)
38 KOG0282 mRNA splicing factor [ 99.9 2.1E-21 4.5E-26 205.2 16.1 190 1-207 265-503 (503)
39 KOG0292 Vesicle coat complex C 99.9 4E-21 8.6E-26 213.8 18.9 212 1-215 16-286 (1202)
40 KOG0318 WD40 repeat stress pro 99.9 3.5E-20 7.5E-25 197.4 24.6 182 2-185 198-505 (603)
41 PTZ00420 coronin; Provisional 99.9 4.9E-20 1.1E-24 207.8 27.2 188 12-211 50-250 (568)
42 KOG0281 Beta-TrCP (transducin 99.9 4.6E-22 1E-26 202.4 9.2 184 4-212 245-431 (499)
43 PTZ00421 coronin; Provisional 99.9 8.1E-20 1.8E-24 204.4 27.5 197 3-212 29-248 (493)
44 KOG0275 Conserved WD40 repeat- 99.9 1.4E-21 3E-26 197.3 10.3 175 2-178 221-403 (508)
45 KOG0282 mRNA splicing factor [ 99.9 3.3E-21 7.1E-26 203.7 13.4 209 2-216 222-469 (503)
46 KOG0772 Uncharacterized conser 99.8 1.2E-20 2.6E-25 200.3 15.8 202 1-215 174-400 (641)
47 KOG0264 Nucleosome remodeling 99.8 3.1E-20 6.8E-25 195.4 18.1 196 4-213 134-351 (422)
48 KOG0276 Vesicle coat complex C 99.8 6.1E-20 1.3E-24 198.5 19.7 205 2-222 21-228 (794)
49 KOG0269 WD40 repeat-containing 99.8 1.4E-20 3E-25 207.8 14.7 203 5-222 99-310 (839)
50 PLN00181 protein SPA1-RELATED; 99.8 3.4E-19 7.4E-24 211.6 27.7 192 2-211 540-740 (793)
51 KOG0319 WD40-repeat-containing 99.8 3.2E-20 6.9E-25 204.2 16.7 184 7-207 425-617 (775)
52 KOG0645 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 175.6 22.7 150 1-152 68-225 (312)
53 KOG0319 WD40-repeat-containing 99.8 6E-20 1.3E-24 202.1 17.3 198 4-217 375-585 (775)
54 KOG0285 Pleiotropic regulator 99.8 4.1E-20 8.9E-25 189.1 14.9 171 29-217 144-315 (460)
55 KOG0313 Microtubule binding pr 99.8 1.3E-19 2.8E-24 186.9 18.6 192 7-212 160-379 (423)
56 KOG0293 WD40 repeat-containing 99.8 4.7E-20 1E-24 191.5 15.4 194 1-211 276-515 (519)
57 KOG0305 Anaphase promoting com 99.8 2.1E-19 4.5E-24 196.3 19.7 204 1-211 224-463 (484)
58 KOG0293 WD40 repeat-containing 99.8 2.1E-19 4.6E-24 186.7 18.6 211 2-218 232-479 (519)
59 KOG0318 WD40 repeat stress pro 99.8 5.2E-19 1.1E-23 188.6 21.8 194 2-210 67-351 (603)
60 KOG0264 Nucleosome remodeling 99.8 2.5E-19 5.5E-24 188.6 19.3 198 1-209 184-404 (422)
61 KOG0640 mRNA cleavage stimulat 99.8 5.9E-20 1.3E-24 185.0 13.6 201 1-217 119-343 (430)
62 KOG0277 Peroxisomal targeting 99.8 3E-19 6.4E-24 176.1 18.2 187 14-214 36-226 (311)
63 KOG1446 Histone H3 (Lys4) meth 99.8 2E-18 4.4E-23 175.1 24.6 182 1-185 21-205 (311)
64 KOG0289 mRNA splicing factor [ 99.8 4.1E-19 8.9E-24 185.7 19.0 196 6-219 231-429 (506)
65 KOG1407 WD40 repeat protein [F 99.8 3E-19 6.5E-24 176.7 16.6 201 1-208 27-310 (313)
66 KOG0772 Uncharacterized conser 99.8 1.4E-19 3E-24 192.3 14.9 212 1-219 221-455 (641)
67 KOG0296 Angio-associated migra 99.8 1.5E-18 3.3E-23 178.4 21.9 189 1-208 113-397 (399)
68 KOG0281 Beta-TrCP (transducin 99.8 7.5E-20 1.6E-24 186.4 10.7 185 4-214 205-393 (499)
69 KOG0313 Microtubule binding pr 99.8 1.2E-18 2.7E-23 179.7 19.7 188 3-210 202-419 (423)
70 KOG0294 WD40 repeat-containing 99.8 1.3E-18 2.9E-23 176.0 19.2 194 3-212 50-284 (362)
71 KOG0646 WD40 repeat protein [G 99.8 1.4E-18 3E-23 183.3 20.2 201 3-217 90-315 (476)
72 KOG0265 U5 snRNP-specific prot 99.8 7.7E-19 1.7E-23 176.7 17.1 194 2-210 98-297 (338)
73 KOG0643 Translation initiation 99.8 2.6E-18 5.6E-23 170.5 20.5 204 2-223 18-234 (327)
74 KOG0302 Ribosome Assembly prot 99.8 8.7E-19 1.9E-23 180.7 17.4 193 6-212 165-381 (440)
75 KOG0278 Serine/threonine kinas 99.8 4.7E-19 1E-23 174.3 13.8 195 1-214 107-302 (334)
76 KOG0300 WD40 repeat-containing 99.8 6.7E-19 1.4E-23 177.7 15.2 195 8-219 162-397 (481)
77 KOG0269 WD40 repeat-containing 99.8 6.8E-19 1.5E-23 194.6 15.7 194 2-209 141-340 (839)
78 KOG0274 Cdc4 and related F-box 99.8 2E-18 4.4E-23 194.0 19.6 190 6-219 261-451 (537)
79 KOG0268 Sof1-like rRNA process 99.8 6E-19 1.3E-23 181.0 13.2 199 7-211 80-347 (433)
80 KOG0647 mRNA export protein (c 99.8 8.4E-18 1.8E-22 169.4 19.3 199 1-214 34-286 (347)
81 KOG0296 Angio-associated migra 99.8 2E-17 4.2E-22 170.3 22.4 196 2-204 72-268 (399)
82 KOG0274 Cdc4 and related F-box 99.8 1.1E-17 2.5E-22 188.0 22.7 194 6-222 218-414 (537)
83 KOG0641 WD40 repeat protein [G 99.8 2.4E-17 5.2E-22 160.1 21.6 193 1-210 39-304 (350)
84 KOG0283 WD40 repeat-containing 99.8 9.2E-18 2E-22 187.9 21.0 195 1-213 376-580 (712)
85 KOG0275 Conserved WD40 repeat- 99.8 3.8E-19 8.3E-24 179.8 9.0 191 1-208 270-508 (508)
86 KOG0973 Histone transcription 99.8 9.4E-18 2E-22 192.0 20.5 180 2-184 21-236 (942)
87 KOG0310 Conserved WD40 repeat- 99.8 2.2E-17 4.7E-22 175.2 21.6 177 2-185 118-297 (487)
88 KOG0267 Microtubule severing p 99.8 2.8E-19 6.1E-24 196.2 7.3 193 6-216 40-233 (825)
89 KOG0292 Vesicle coat complex C 99.8 1.4E-17 3E-22 185.9 20.0 183 1-187 58-270 (1202)
90 KOG0639 Transducin-like enhanc 99.8 2.3E-18 5.1E-23 182.3 13.1 177 2-185 473-651 (705)
91 KOG0308 Conserved WD40 repeat- 99.8 2.1E-18 4.5E-23 187.7 12.8 199 4-219 35-253 (735)
92 KOG0270 WD40 repeat-containing 99.8 1.7E-17 3.7E-22 174.3 17.8 195 5-213 191-408 (463)
93 KOG0306 WD40-repeat-containing 99.8 2.5E-17 5.4E-22 181.6 19.1 191 2-209 462-664 (888)
94 KOG0289 mRNA splicing factor [ 99.8 5.8E-17 1.3E-21 169.7 20.9 191 2-207 311-504 (506)
95 KOG0299 U3 snoRNP-associated p 99.7 2.3E-17 4.9E-22 174.0 16.5 194 1-211 209-412 (479)
96 KOG0973 Histone transcription 99.7 4.3E-17 9.2E-22 186.6 19.9 190 2-208 77-354 (942)
97 KOG0316 Conserved WD40 repeat- 99.7 4.9E-17 1.1E-21 159.0 17.4 195 2-204 67-262 (307)
98 KOG1036 Mitotic spindle checkp 99.7 1.3E-16 2.9E-21 161.3 20.9 168 2-178 21-188 (323)
99 KOG4283 Transcription-coupled 99.7 3.8E-17 8.2E-22 164.0 16.4 191 5-209 55-276 (397)
100 KOG0308 Conserved WD40 repeat- 99.7 4.9E-17 1.1E-21 177.1 18.5 193 3-212 82-288 (735)
101 KOG1332 Vesicle coat complex C 99.7 2.7E-17 5.9E-22 161.6 14.9 195 4-210 21-242 (299)
102 KOG0640 mRNA cleavage stimulat 99.7 2.6E-17 5.6E-22 166.1 14.7 168 34-214 109-296 (430)
103 KOG0288 WD40 repeat protein Ti 99.7 2.6E-17 5.5E-22 171.5 14.6 189 2-206 227-458 (459)
104 KOG0302 Ribosome Assembly prot 99.7 6.2E-17 1.3E-21 167.1 16.1 178 1-179 218-420 (440)
105 KOG0305 Anaphase promoting com 99.7 1.1E-16 2.5E-21 175.0 19.1 198 2-219 185-386 (484)
106 KOG0267 Microtubule severing p 99.7 3.9E-18 8.5E-23 187.3 7.5 178 2-185 78-256 (825)
107 KOG0306 WD40-repeat-containing 99.7 1.2E-16 2.7E-21 176.2 19.2 200 2-218 420-631 (888)
108 KOG1408 WD40 repeat protein [F 99.7 6.2E-17 1.3E-21 177.1 14.5 193 1-209 466-713 (1080)
109 KOG0288 WD40 repeat protein Ti 99.7 1.8E-17 3.9E-22 172.7 9.1 174 2-184 183-358 (459)
110 KOG4378 Nuclear protein COP1 [ 99.7 9.1E-14 2E-18 147.7 36.6 190 6-214 91-285 (673)
111 KOG0641 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 147.1 21.3 192 1-209 96-349 (350)
112 KOG1274 WD40 repeat protein [G 99.7 6.8E-16 1.5E-20 173.9 20.5 192 2-209 62-262 (933)
113 KOG0299 U3 snoRNP-associated p 99.7 3.2E-16 7E-21 165.3 16.0 200 1-219 149-366 (479)
114 KOG0300 WD40 repeat-containing 99.7 6.3E-16 1.4E-20 156.4 16.4 193 4-210 282-477 (481)
115 KOG0647 mRNA export protein (c 99.7 7.8E-16 1.7E-20 155.3 16.6 163 30-210 20-185 (347)
116 KOG2096 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 154.4 17.8 193 1-209 93-308 (420)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.4E-14 3E-19 149.4 25.0 189 6-213 1-191 (300)
118 KOG0643 Translation initiation 99.7 6E-15 1.3E-19 146.8 20.6 178 3-187 61-251 (327)
119 KOG0270 WD40 repeat-containing 99.7 2.7E-15 5.7E-20 157.9 19.1 194 7-214 257-454 (463)
120 KOG0307 Vesicle coat complex C 99.7 1.4E-16 3.1E-21 183.1 10.0 200 1-214 71-289 (1049)
121 KOG0278 Serine/threonine kinas 99.7 1.2E-16 2.5E-21 157.5 8.0 194 3-216 68-261 (334)
122 KOG0303 Actin-binding protein 99.7 3.5E-15 7.7E-20 154.9 18.9 198 1-213 88-298 (472)
123 KOG1446 Histone H3 (Lys4) meth 99.7 9.4E-15 2E-19 148.6 21.4 178 2-185 108-293 (311)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.9E-14 6.3E-19 147.0 25.2 196 1-212 37-240 (300)
125 KOG1332 Vesicle coat complex C 99.6 2.4E-15 5.1E-20 148.1 14.7 189 5-208 69-285 (299)
126 KOG1445 Tumor-specific antigen 99.6 2.6E-15 5.7E-20 162.7 16.1 181 2-185 587-782 (1012)
127 KOG2096 WD40 repeat protein [G 99.6 3.3E-15 7.2E-20 151.5 14.8 177 5-187 198-393 (420)
128 KOG0301 Phospholipase A2-activ 99.6 3.4E-15 7.3E-20 164.0 15.9 179 5-209 70-249 (745)
129 KOG2445 Nuclear pore complex c 99.6 2.6E-14 5.7E-19 144.6 20.5 199 1-210 20-257 (361)
130 KOG0301 Phospholipase A2-activ 99.6 8.4E-15 1.8E-19 160.9 17.4 176 8-210 114-289 (745)
131 KOG0321 WD40 repeat-containing 99.6 9.3E-15 2E-19 159.3 17.4 152 2-154 108-303 (720)
132 KOG0303 Actin-binding protein 99.6 5.2E-15 1.1E-19 153.7 14.7 169 34-214 78-254 (472)
133 KOG1407 WD40 repeat protein [F 99.6 1E-14 2.3E-19 144.7 15.8 171 31-215 15-225 (313)
134 KOG1274 WD40 repeat protein [G 99.6 1.8E-14 4E-19 162.5 19.2 174 1-184 103-287 (933)
135 KOG1273 WD40 repeat protein [G 99.6 2.6E-14 5.6E-19 145.0 17.9 191 2-210 31-227 (405)
136 KOG1539 WD repeat protein [Gen 99.6 1.6E-14 3.5E-19 161.4 17.9 178 3-187 457-637 (910)
137 KOG2919 Guanine nucleotide-bin 99.6 1.5E-14 3.3E-19 147.1 15.7 197 3-213 120-331 (406)
138 KOG2055 WD40 repeat protein [G 99.6 3.8E-14 8.2E-19 149.8 19.1 191 2-210 221-418 (514)
139 KOG1188 WD40 repeat protein [G 99.6 2E-14 4.4E-19 147.3 16.3 195 7-213 41-246 (376)
140 KOG2048 WD40 repeat protein [G 99.6 1.3E-13 2.7E-18 151.6 23.2 195 1-212 32-236 (691)
141 KOG1034 Transcriptional repres 99.6 2.1E-14 4.6E-19 146.4 15.5 189 7-209 106-383 (385)
142 KOG2055 WD40 repeat protein [G 99.6 2.4E-14 5.2E-19 151.3 16.2 190 2-210 311-513 (514)
143 KOG0771 Prolactin regulatory e 99.6 1.9E-14 4.2E-19 151.0 15.0 201 1-208 151-364 (398)
144 KOG0639 Transducin-like enhanc 99.6 1.3E-14 2.7E-19 154.3 13.1 188 1-208 516-703 (705)
145 KOG1007 WD repeat protein TSSC 99.6 2.1E-14 4.6E-19 144.2 13.9 152 1-153 177-362 (370)
146 KOG4328 WD40 protein [Function 99.6 2.2E-14 4.7E-19 151.5 14.7 196 1-209 193-399 (498)
147 KOG2394 WD40 protein DMR-N9 [G 99.6 3.6E-14 7.7E-19 152.3 15.9 171 4-177 183-384 (636)
148 KOG0294 WD40 repeat-containing 99.6 2.8E-13 6.1E-18 137.7 21.1 198 8-214 3-242 (362)
149 KOG4283 Transcription-coupled 99.6 4.9E-14 1.1E-18 141.8 15.1 167 31-211 37-221 (397)
150 KOG0321 WD40 repeat-containing 99.6 9.5E-14 2.1E-18 151.5 17.5 192 7-212 65-304 (720)
151 KOG0646 WD40 repeat protein [G 99.5 1.1E-13 2.4E-18 146.6 16.7 170 2-177 131-329 (476)
152 KOG1063 RNA polymerase II elon 99.5 1E-13 2.2E-18 152.5 16.4 204 2-209 533-763 (764)
153 KOG0290 Conserved WD40 repeat- 99.5 7.2E-14 1.6E-18 140.5 14.0 194 2-210 104-319 (364)
154 KOG1009 Chromatin assembly com 99.5 9E-14 2E-18 145.2 13.4 150 2-153 21-196 (434)
155 KOG0268 Sof1-like rRNA process 99.5 2.7E-14 5.9E-19 147.1 9.1 150 2-154 195-347 (433)
156 KOG1036 Mitotic spindle checkp 99.5 3.4E-13 7.3E-18 136.9 16.6 161 31-213 7-167 (323)
157 KOG1408 WD40 repeat protein [F 99.5 3E-13 6.6E-18 148.6 17.2 209 2-212 332-629 (1080)
158 KOG0642 Cell-cycle nuclear pro 99.5 4.6E-13 9.9E-18 144.8 17.7 197 1-214 301-566 (577)
159 KOG0307 Vesicle coat complex C 99.5 5.4E-14 1.2E-18 162.1 10.5 193 2-209 124-327 (1049)
160 KOG0650 WD40 repeat nucleolar 99.5 2.5E-13 5.5E-18 147.2 14.6 192 3-210 409-681 (733)
161 COG2319 FOG: WD40 repeat [Gene 99.5 6.1E-12 1.3E-16 131.3 24.7 192 3-212 119-317 (466)
162 KOG2919 Guanine nucleotide-bin 99.5 5.8E-13 1.3E-17 135.7 15.9 181 1-185 165-358 (406)
163 KOG0649 WD40 repeat protein [G 99.5 2.2E-12 4.7E-17 127.2 18.9 208 1-222 17-248 (325)
164 KOG1007 WD repeat protein TSSC 99.5 1.2E-12 2.6E-17 131.7 17.2 192 2-209 131-361 (370)
165 KOG2048 WD40 repeat protein [G 99.5 2.1E-12 4.4E-17 142.2 20.1 179 1-186 76-264 (691)
166 KOG1538 Uncharacterized conser 99.5 4.7E-13 1E-17 146.1 14.5 169 1-178 19-187 (1081)
167 KOG2106 Uncharacterized conser 99.5 5.6E-12 1.2E-16 134.6 21.9 175 1-186 253-466 (626)
168 PRK04922 tolB translocation pr 99.5 1.1E-11 2.5E-16 137.4 25.5 178 1-187 210-398 (433)
169 KOG1524 WD40 repeat-containing 99.5 7.7E-13 1.7E-17 141.9 15.1 178 2-202 112-289 (737)
170 PRK02889 tolB translocation pr 99.5 1.1E-11 2.4E-16 137.3 24.6 187 1-196 202-399 (427)
171 KOG1445 Tumor-specific antigen 99.4 1.3E-12 2.8E-17 142.1 15.2 199 1-213 634-848 (1012)
172 PRK03629 tolB translocation pr 99.4 1.8E-11 3.9E-16 135.8 24.8 178 1-187 205-393 (429)
173 KOG2445 Nuclear pore complex c 99.4 9.4E-12 2E-16 126.4 20.1 190 6-209 73-318 (361)
174 COG2319 FOG: WD40 repeat [Gene 99.4 3.6E-11 7.8E-16 125.5 24.9 197 2-213 73-275 (466)
175 PF08662 eIF2A: Eukaryotic tra 99.4 7.9E-12 1.7E-16 123.9 18.7 148 2-154 13-181 (194)
176 PRK05137 tolB translocation pr 99.4 3.2E-11 6.9E-16 134.0 24.9 176 1-185 208-394 (435)
177 KOG4328 WD40 protein [Function 99.4 3.8E-12 8.3E-17 134.8 16.5 189 2-193 287-490 (498)
178 PF08662 eIF2A: Eukaryotic tra 99.4 1.3E-11 2.8E-16 122.3 19.1 155 42-209 10-179 (194)
179 TIGR02800 propeller_TolB tol-p 99.4 5.4E-11 1.2E-15 130.6 25.9 180 1-189 196-386 (417)
180 KOG2139 WD40 repeat protein [G 99.4 9.6E-12 2.1E-16 128.5 18.4 194 1-202 105-313 (445)
181 KOG1310 WD40 repeat protein [G 99.4 2.3E-12 4.9E-17 138.6 14.1 152 1-152 57-231 (758)
182 PRK01742 tolB translocation pr 99.4 1.9E-11 4.1E-16 135.6 22.1 172 1-186 210-390 (429)
183 KOG1539 WD repeat protein [Gen 99.4 1.9E-11 4E-16 137.2 21.3 185 5-206 123-315 (910)
184 PRK11028 6-phosphogluconolacto 99.4 3.7E-11 8E-16 128.1 21.9 195 1-209 86-304 (330)
185 KOG1063 RNA polymerase II elon 99.4 1.1E-11 2.4E-16 136.7 17.7 197 2-211 324-650 (764)
186 KOG1273 WD40 repeat protein [G 99.4 6.9E-12 1.5E-16 127.6 14.7 161 40-216 26-190 (405)
187 KOG0290 Conserved WD40 repeat- 99.4 1.1E-11 2.4E-16 125.0 15.9 179 5-185 162-354 (364)
188 KOG1524 WD40 repeat-containing 99.4 5.9E-12 1.3E-16 135.2 14.4 167 7-183 76-243 (737)
189 KOG1034 Transcriptional repres 99.4 8.5E-12 1.9E-16 127.6 14.5 186 8-209 57-279 (385)
190 KOG1523 Actin-related protein 99.4 1.1E-11 2.3E-16 126.6 15.1 183 1-185 17-224 (361)
191 KOG2106 Uncharacterized conser 99.4 6.9E-11 1.5E-15 126.5 21.6 177 9-206 342-518 (626)
192 KOG1188 WD40 repeat protein [G 99.4 5.9E-12 1.3E-16 129.4 13.0 148 51-211 41-198 (376)
193 KOG1009 Chromatin assembly com 99.4 9.3E-12 2E-16 130.3 14.5 149 35-186 11-184 (434)
194 PRK11028 6-phosphogluconolacto 99.4 2.4E-10 5.3E-15 121.8 26.0 196 1-210 41-259 (330)
195 KOG4227 WD40 repeat protein [G 99.3 2.1E-11 4.6E-16 126.7 15.9 153 2-157 64-230 (609)
196 KOG2110 Uncharacterized conser 99.3 1.8E-10 3.8E-15 119.7 22.6 185 8-212 58-251 (391)
197 KOG1517 Guanine nucleotide bin 99.3 6.5E-11 1.4E-15 135.4 19.5 197 2-211 1072-1289(1387)
198 KOG4227 WD40 repeat protein [G 99.3 3.8E-11 8.1E-16 124.8 16.1 166 36-213 55-229 (609)
199 KOG2110 Uncharacterized conser 99.3 5.5E-11 1.2E-15 123.4 17.2 146 6-153 97-249 (391)
200 KOG1517 Guanine nucleotide bin 99.3 3.2E-11 7E-16 137.9 16.6 193 2-209 1173-1381(1387)
201 PRK00178 tolB translocation pr 99.3 4.5E-10 9.8E-15 124.4 25.2 178 1-187 205-393 (430)
202 PRK04792 tolB translocation pr 99.3 5E-10 1.1E-14 124.9 25.1 177 1-186 224-411 (448)
203 KOG1587 Cytoplasmic dynein int 99.3 7.5E-11 1.6E-15 132.6 18.2 199 2-213 250-476 (555)
204 KOG3881 Uncharacterized conser 99.3 1.2E-10 2.5E-15 121.8 17.8 196 7-219 116-330 (412)
205 KOG0649 WD40 repeat protein [G 99.3 1.7E-10 3.8E-15 113.9 18.0 180 6-209 72-274 (325)
206 KOG0650 WD40 repeat nucleolar 99.3 2.7E-11 5.8E-16 131.7 13.0 188 1-206 528-732 (733)
207 KOG0644 Uncharacterized conser 99.3 5.4E-12 1.2E-16 141.1 6.6 191 1-212 197-429 (1113)
208 PRK01742 tolB translocation pr 99.2 1.2E-10 2.6E-15 129.1 16.3 168 1-177 254-425 (429)
209 KOG1310 WD40 repeat protein [G 99.2 2.6E-11 5.6E-16 130.6 10.0 171 30-213 44-235 (758)
210 KOG1523 Actin-related protein 99.2 1.5E-10 3.2E-15 118.3 14.3 157 37-206 10-173 (361)
211 KOG0322 G-protein beta subunit 99.2 6.4E-11 1.4E-15 118.2 11.1 142 52-208 167-322 (323)
212 KOG1272 WD40-repeat-containing 99.2 4.5E-11 9.7E-16 126.9 9.6 208 2-214 217-426 (545)
213 PRK05137 tolB translocation pr 99.2 3.2E-09 6.9E-14 118.0 24.9 161 17-185 183-351 (435)
214 KOG2111 Uncharacterized conser 99.2 3.7E-09 7.9E-14 108.3 22.8 178 16-212 75-259 (346)
215 PRK03629 tolB translocation pr 99.2 2.7E-09 6E-14 118.4 23.9 177 17-210 180-364 (429)
216 KOG2394 WD40 protein DMR-N9 [G 99.2 1.4E-10 3.1E-15 124.9 13.0 93 38-132 291-384 (636)
217 KOG2321 WD40 repeat protein [G 99.2 1.1E-09 2.3E-14 119.1 18.9 199 2-215 59-308 (703)
218 KOG4547 WD40 repeat-containing 99.2 2.4E-09 5.1E-14 117.2 20.3 198 3-212 2-223 (541)
219 KOG0974 WD-repeat protein WDR6 99.1 1.4E-09 3E-14 125.2 17.9 188 5-212 98-291 (967)
220 PRK02889 tolB translocation pr 99.1 3.4E-09 7.4E-14 117.6 20.7 178 16-210 176-361 (427)
221 KOG0322 G-protein beta subunit 99.1 2.7E-10 5.9E-15 113.8 10.3 143 8-151 167-322 (323)
222 PRK04922 tolB translocation pr 99.1 3E-09 6.5E-14 118.2 19.7 168 1-177 254-432 (433)
223 KOG4497 Uncharacterized conser 99.1 1.6E-10 3.5E-15 118.2 8.4 138 1-142 15-153 (447)
224 KOG2111 Uncharacterized conser 99.1 1.5E-08 3.3E-13 103.8 22.5 147 6-154 104-258 (346)
225 KOG1963 WD40 repeat protein [G 99.1 3.6E-09 7.7E-14 120.1 19.3 182 1-185 212-416 (792)
226 KOG3881 Uncharacterized conser 99.1 1.7E-09 3.6E-14 113.2 15.2 166 8-177 163-341 (412)
227 PRK01029 tolB translocation pr 99.1 1.8E-08 3.9E-13 111.8 24.1 194 1-209 191-403 (428)
228 PRK04043 tolB translocation pr 99.1 3.4E-08 7.4E-13 109.2 26.0 190 1-201 194-401 (419)
229 KOG0771 Prolactin regulatory e 99.1 5.4E-10 1.2E-14 117.9 11.0 154 41-209 148-311 (398)
230 TIGR02800 propeller_TolB tol-p 99.1 2.3E-08 4.9E-13 109.9 24.2 161 17-185 171-339 (417)
231 PRK01029 tolB translocation pr 99.1 1E-08 2.2E-13 113.8 20.9 173 1-177 237-424 (428)
232 KOG1963 WD40 repeat protein [G 99.0 5.8E-09 1.3E-13 118.4 18.3 196 2-212 168-378 (792)
233 KOG1538 Uncharacterized conser 99.0 8.2E-09 1.8E-13 113.6 18.5 192 1-209 60-293 (1081)
234 KOG1240 Protein kinase contain 99.0 1.5E-08 3.3E-13 118.1 20.4 199 3-213 1058-1277(1431)
235 KOG1587 Cytoplasmic dynein int 99.0 5.7E-09 1.2E-13 117.6 16.0 188 7-209 306-516 (555)
236 KOG0280 Uncharacterized conser 99.0 4.5E-09 9.7E-14 106.6 13.5 182 2-185 129-319 (339)
237 PF02239 Cytochrom_D1: Cytochr 99.0 1.1E-07 2.3E-12 103.6 24.8 178 7-190 6-194 (369)
238 KOG0974 WD-repeat protein WDR6 99.0 3.1E-09 6.8E-14 122.3 13.1 148 3-154 142-290 (967)
239 KOG1334 WD40 repeat protein [G 99.0 2.3E-09 4.9E-14 114.8 11.1 179 2-180 150-349 (559)
240 KOG2321 WD40 repeat protein [G 99.0 1E-08 2.2E-13 111.6 15.6 169 9-184 148-330 (703)
241 KOG0644 Uncharacterized conser 99.0 1.1E-09 2.3E-14 123.1 8.1 111 36-152 189-300 (1113)
242 KOG2139 WD40 repeat protein [G 99.0 3.8E-08 8.2E-13 102.3 18.4 206 1-214 147-388 (445)
243 PRK00178 tolB translocation pr 99.0 1.5E-07 3.2E-12 104.4 24.6 161 17-185 180-348 (430)
244 KOG0642 Cell-cycle nuclear pro 98.9 5.3E-09 1.1E-13 113.7 12.2 151 2-154 352-563 (577)
245 PRK04792 tolB translocation pr 98.9 1.7E-07 3.6E-12 104.8 23.0 161 17-185 199-367 (448)
246 PF10282 Lactonase: Lactonase, 98.9 1.2E-06 2.5E-11 94.7 28.6 186 1-186 93-310 (345)
247 KOG1354 Serine/threonine prote 98.9 1.9E-08 4.1E-13 103.9 13.6 197 2-213 33-305 (433)
248 PF02239 Cytochrom_D1: Cytochr 98.9 4.4E-07 9.6E-12 98.8 24.3 211 1-219 43-267 (369)
249 KOG1240 Protein kinase contain 98.8 5.3E-08 1.1E-12 113.7 16.6 181 21-216 1034-1232(1431)
250 PF10282 Lactonase: Lactonase, 98.8 2.8E-06 6.2E-11 91.6 27.4 197 1-209 43-275 (345)
251 KOG1064 RAVE (regulator of V-A 98.8 1.6E-08 3.5E-13 121.2 10.2 182 3-215 2217-2404(2439)
252 KOG4497 Uncharacterized conser 98.7 2.5E-07 5.5E-12 95.2 15.6 149 2-153 56-241 (447)
253 COG2706 3-carboxymuconate cycl 98.7 7E-06 1.5E-10 86.1 25.5 189 1-190 46-266 (346)
254 PLN02919 haloacid dehalogenase 98.7 2.6E-06 5.5E-11 104.2 26.0 194 1-211 630-890 (1057)
255 COG4946 Uncharacterized protei 98.7 2.3E-06 5.1E-11 91.8 21.8 170 5-185 331-506 (668)
256 KOG2315 Predicted translation 98.7 7.6E-07 1.7E-11 97.3 18.3 178 14-209 192-390 (566)
257 KOG0280 Uncharacterized conser 98.7 5E-07 1.1E-11 92.0 15.7 168 8-179 87-265 (339)
258 KOG3914 WD repeat protein WDR4 98.7 1.9E-07 4.1E-12 98.5 13.1 151 2-157 70-228 (390)
259 KOG1064 RAVE (regulator of V-A 98.7 4.2E-08 9E-13 117.8 9.1 176 1-201 2258-2438(2439)
260 KOG4547 WD40 repeat-containing 98.7 1.7E-06 3.6E-11 95.2 20.5 144 6-153 70-221 (541)
261 KOG4532 WD40-like repeat conta 98.7 1.8E-06 3.9E-11 87.0 18.5 172 6-180 84-263 (344)
262 KOG0309 Conserved WD40 repeat- 98.6 1.8E-07 3.9E-12 104.4 9.5 202 2-209 122-339 (1081)
263 KOG2315 Predicted translation 98.5 3.3E-06 7.3E-11 92.4 17.7 149 17-177 252-410 (566)
264 KOG1275 PAB-dependent poly(A) 98.5 2.5E-06 5.4E-11 97.6 17.3 187 5-210 146-343 (1118)
265 KOG3914 WD repeat protein WDR4 98.5 1.2E-06 2.5E-11 92.6 13.0 162 42-219 67-233 (390)
266 PLN02919 haloacid dehalogenase 98.5 8.7E-06 1.9E-10 99.6 22.0 154 1-155 689-891 (1057)
267 TIGR02658 TTQ_MADH_Hv methylam 98.5 6.8E-05 1.5E-09 80.8 26.2 199 2-216 53-337 (352)
268 COG4946 Uncharacterized protei 98.5 2.3E-05 5E-10 84.3 21.5 190 3-210 275-478 (668)
269 KOG0309 Conserved WD40 repeat- 98.4 7.5E-07 1.6E-11 99.6 10.3 197 2-213 32-236 (1081)
270 COG2706 3-carboxymuconate cycl 98.4 7.5E-05 1.6E-09 78.5 24.5 192 1-195 95-318 (346)
271 KOG4714 Nucleoporin [Nuclear s 98.4 1.9E-06 4.2E-11 86.5 12.1 146 5-153 100-255 (319)
272 KOG1354 Serine/threonine prote 98.4 2E-06 4.3E-11 89.3 12.4 187 7-208 99-358 (433)
273 KOG1409 Uncharacterized conser 98.4 5.1E-06 1.1E-10 86.3 15.2 191 5-210 35-271 (404)
274 COG0823 TolB Periplasmic compo 98.4 9E-06 2E-10 90.0 18.0 197 1-205 199-407 (425)
275 PRK04043 tolB translocation pr 98.4 0.0001 2.2E-09 81.8 25.6 160 16-186 169-337 (419)
276 KOG1334 WD40 repeat protein [G 98.4 1.4E-06 3E-11 93.9 9.5 168 35-214 140-317 (559)
277 COG5170 CDC55 Serine/threonine 98.4 3E-06 6.5E-11 86.9 11.3 198 2-213 34-313 (460)
278 COG5354 Uncharacterized protei 98.3 1.8E-05 3.9E-10 85.9 17.6 183 12-209 198-395 (561)
279 KOG1409 Uncharacterized conser 98.3 3.4E-06 7.4E-11 87.6 11.0 102 10-113 169-272 (404)
280 PF08450 SGL: SMP-30/Gluconola 98.3 0.00017 3.7E-09 73.7 23.5 177 1-185 6-201 (246)
281 PF15492 Nbas_N: Neuroblastoma 98.3 5.5E-05 1.2E-09 77.4 19.0 153 1-154 50-261 (282)
282 KOG4714 Nucleoporin [Nuclear s 98.3 1.8E-06 4E-11 86.6 8.2 95 17-112 160-255 (319)
283 KOG2695 WD40 repeat protein [G 98.2 4.3E-06 9.4E-11 86.9 9.3 162 10-177 228-402 (425)
284 KOG2041 WD40 repeat protein [G 98.2 9.4E-06 2E-10 90.7 12.4 151 1-153 21-187 (1189)
285 KOG1832 HIV-1 Vpr-binding prot 98.2 5.6E-07 1.2E-11 102.1 2.5 186 1-217 1108-1299(1516)
286 KOG4532 WD40-like repeat conta 98.2 0.00011 2.5E-09 74.3 18.1 147 9-157 131-287 (344)
287 PF15492 Nbas_N: Neuroblastoma 98.2 0.00044 9.6E-09 70.9 22.5 193 2-210 5-260 (282)
288 KOG2695 WD40 repeat protein [G 98.2 4.3E-06 9.4E-11 86.9 8.1 163 44-219 218-386 (425)
289 KOG4190 Uncharacterized conser 98.2 5.2E-06 1.1E-10 90.2 8.7 175 30-209 729-917 (1034)
290 PF07433 DUF1513: Protein of u 98.2 0.0008 1.7E-08 70.7 24.4 198 1-213 11-251 (305)
291 KOG2314 Translation initiation 98.2 6.5E-05 1.4E-09 82.3 16.8 196 2-210 257-526 (698)
292 KOG4190 Uncharacterized conser 98.1 1.2E-05 2.6E-10 87.4 11.0 146 5-154 746-908 (1034)
293 PF08450 SGL: SMP-30/Gluconola 98.1 0.00068 1.5E-08 69.2 23.1 163 4-176 50-233 (246)
294 PF07433 DUF1513: Protein of u 98.1 0.00069 1.5E-08 71.1 22.8 176 1-185 57-274 (305)
295 KOG2114 Vacuolar assembly/sort 98.1 0.00024 5.3E-09 81.5 20.8 180 1-184 30-232 (933)
296 PF04762 IKI3: IKI3 family; I 98.1 0.00013 2.9E-09 88.1 19.6 190 3-198 84-333 (928)
297 COG5354 Uncharacterized protei 98.1 0.00023 5E-09 77.5 19.0 192 2-210 79-307 (561)
298 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0011 2.5E-08 71.4 23.4 143 5-153 11-176 (352)
299 KOG1008 Uncharacterized conser 98.0 1.5E-06 3.2E-11 96.4 1.0 195 5-210 69-276 (783)
300 PF11768 DUF3312: Protein of u 98.0 0.00024 5.1E-09 79.1 18.1 113 42-155 210-332 (545)
301 PF00400 WD40: WD domain, G-be 98.0 2.1E-05 4.6E-10 56.4 6.3 36 74-109 4-39 (39)
302 KOG1645 RING-finger-containing 97.9 0.00018 3.9E-09 76.4 14.6 94 18-114 175-269 (463)
303 COG5170 CDC55 Serine/threonine 97.9 0.00015 3.3E-09 74.6 13.6 148 35-185 170-355 (460)
304 KOG2314 Translation initiation 97.9 0.00025 5.3E-09 77.9 15.5 174 2-185 218-411 (698)
305 KOG1912 WD40 repeat protein [G 97.9 0.00023 5E-09 80.7 15.3 187 8-209 81-304 (1062)
306 PRK02888 nitrous-oxide reducta 97.9 0.0015 3.3E-08 74.4 22.0 210 2-214 200-490 (635)
307 PF04762 IKI3: IKI3 family; I 97.9 0.00052 1.1E-08 83.0 19.5 172 1-179 127-360 (928)
308 PF13360 PQQ_2: PQQ-like domai 97.9 0.0015 3.4E-08 65.5 20.2 185 5-212 35-233 (238)
309 KOG2041 WD40 repeat protein [G 97.9 6.7E-05 1.4E-09 84.1 10.6 146 35-185 12-174 (1189)
310 PF00400 WD40: WD domain, G-be 97.8 4.9E-05 1.1E-09 54.4 6.2 38 27-66 2-39 (39)
311 KOG1920 IkappaB kinase complex 97.8 0.00088 1.9E-08 79.6 19.4 177 4-184 78-306 (1265)
312 TIGR03300 assembly_YfgL outer 97.8 0.0019 4E-08 70.3 20.8 142 5-155 64-211 (377)
313 KOG2066 Vacuolar assembly/sort 97.8 0.00012 2.6E-09 83.4 11.3 151 37-216 39-194 (846)
314 KOG2066 Vacuolar assembly/sort 97.8 0.0011 2.5E-08 75.7 18.6 140 5-153 82-234 (846)
315 PF11768 DUF3312: Protein of u 97.8 0.00063 1.4E-08 75.8 16.3 133 61-210 185-330 (545)
316 TIGR03300 assembly_YfgL outer 97.8 0.0017 3.8E-08 70.5 19.7 139 7-155 191-341 (377)
317 KOG1912 WD40 repeat protein [G 97.8 0.0005 1.1E-08 78.1 15.2 147 2-152 23-186 (1062)
318 KOG1275 PAB-dependent poly(A) 97.7 0.00019 4.1E-09 82.7 11.8 143 4-152 185-342 (1118)
319 PF13360 PQQ_2: PQQ-like domai 97.7 0.002 4.3E-08 64.8 18.0 137 14-155 1-143 (238)
320 KOG0882 Cyclophilin-related pe 97.7 0.0013 2.8E-08 70.9 15.7 201 2-206 61-313 (558)
321 PF03178 CPSF_A: CPSF A subuni 97.6 0.0031 6.7E-08 67.2 18.0 178 16-210 2-203 (321)
322 PF06977 SdiA-regulated: SdiA- 97.6 0.0059 1.3E-07 62.9 18.7 181 1-185 28-239 (248)
323 COG3391 Uncharacterized conser 97.6 0.019 4.2E-07 62.9 24.0 179 2-186 81-271 (381)
324 PF08553 VID27: VID27 cytoplas 97.5 0.0023 5E-08 75.2 17.3 135 13-151 501-646 (794)
325 PF04053 Coatomer_WDAD: Coatom 97.5 0.0011 2.3E-08 74.0 13.8 162 2-184 40-212 (443)
326 KOG1645 RING-finger-containing 97.5 0.00038 8.3E-09 74.0 9.5 115 62-177 175-291 (463)
327 PRK02888 nitrous-oxide reducta 97.5 0.005 1.1E-07 70.3 18.8 193 4-210 139-405 (635)
328 COG0823 TolB Periplasmic compo 97.4 0.0024 5.2E-08 70.9 15.1 161 17-186 174-344 (425)
329 KOG3621 WD40 repeat-containing 97.4 0.00092 2E-08 75.6 10.6 128 2-131 41-179 (726)
330 KOG0882 Cyclophilin-related pe 97.3 0.00075 1.6E-08 72.7 9.0 188 6-209 20-231 (558)
331 PF04841 Vps16_N: Vps16, N-ter 97.3 0.064 1.4E-06 59.5 23.9 60 123-184 217-276 (410)
332 KOG3621 WD40 repeat-containing 97.2 0.0021 4.5E-08 72.8 11.6 117 36-153 32-155 (726)
333 PF02897 Peptidase_S9_N: Proly 97.1 0.18 3.9E-06 55.6 25.7 150 2-155 131-312 (414)
334 PRK11138 outer membrane biogen 97.1 0.022 4.9E-07 62.4 18.2 144 6-155 120-277 (394)
335 PRK11138 outer membrane biogen 97.1 0.022 4.7E-07 62.5 17.8 136 6-151 256-393 (394)
336 PF06156 DUF972: Protein of un 97.1 0.0013 2.8E-08 58.7 6.6 46 603-648 7-52 (107)
337 KOG3617 WD40 and TPR repeat-co 97.1 0.0028 6.1E-08 72.7 10.4 106 1-111 22-131 (1416)
338 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00052 1.1E-08 78.8 4.7 147 30-182 1095-1245(1516)
339 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.037 8E-07 56.4 17.2 105 6-113 63-167 (354)
340 KOG4640 Anaphase-promoting com 97.0 0.003 6.5E-08 70.8 9.6 92 38-132 21-115 (665)
341 PF08553 VID27: VID27 cytoplas 97.0 0.015 3.2E-07 68.7 15.7 140 50-196 493-645 (794)
342 COG3391 Uncharacterized conser 97.0 0.084 1.8E-06 57.9 20.9 151 1-154 122-285 (381)
343 PRK13616 lipoprotein LpqB; Pro 97.0 0.033 7.2E-07 64.5 18.3 163 1-177 356-550 (591)
344 KOG1920 IkappaB kinase complex 97.0 0.022 4.8E-07 68.2 16.8 109 43-154 201-324 (1265)
345 PF00780 CNH: CNH domain; Int 96.9 0.24 5.3E-06 51.1 22.9 142 5-154 6-167 (275)
346 PRK13169 DNA replication intia 96.9 0.0026 5.7E-08 56.9 6.6 45 604-648 8-52 (110)
347 KOG1008 Uncharacterized conser 96.9 0.00032 6.9E-09 78.3 0.9 159 37-212 56-229 (783)
348 KOG4640 Anaphase-promoting com 96.8 0.0042 9.1E-08 69.7 8.8 87 2-90 28-114 (665)
349 PRK13616 lipoprotein LpqB; Pro 96.8 0.078 1.7E-06 61.4 19.4 135 38-182 350-511 (591)
350 PF03178 CPSF_A: CPSF A subuni 96.7 0.2 4.3E-06 53.4 20.7 162 6-173 42-230 (321)
351 KOG2114 Vacuolar assembly/sort 96.7 0.088 1.9E-06 61.3 18.4 147 7-155 78-246 (933)
352 COG3386 Gluconolactonase [Carb 96.6 0.34 7.3E-06 51.7 21.4 153 18-176 87-263 (307)
353 PF00930 DPPIV_N: Dipeptidyl p 96.6 0.21 4.6E-06 54.0 20.4 178 2-184 50-297 (353)
354 PF06977 SdiA-regulated: SdiA- 96.6 0.19 4.2E-06 51.8 18.9 145 38-184 22-187 (248)
355 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.14 3E-06 46.1 15.2 98 44-148 9-110 (111)
356 smart00320 WD40 WD40 repeats. 96.5 0.0073 1.6E-07 40.3 5.2 36 74-109 5-40 (40)
357 KOG2395 Protein involved in va 96.5 0.079 1.7E-06 58.8 15.4 131 49-185 345-489 (644)
358 PF05096 Glu_cyclase_2: Glutam 96.4 1 2.3E-05 46.7 22.6 169 4-180 54-243 (264)
359 cd00216 PQQ_DH Dehydrogenases 96.4 0.22 4.7E-06 56.6 19.2 146 5-156 227-428 (488)
360 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.14 3E-06 46.1 13.7 94 3-106 11-109 (111)
361 KOG3617 WD40 and TPR repeat-co 96.3 0.0074 1.6E-07 69.5 6.9 108 41-152 19-131 (1416)
362 PF02333 Phytase: Phytase; In 96.3 0.59 1.3E-05 51.0 21.2 195 4-210 66-291 (381)
363 PF14583 Pectate_lyase22: Olig 96.3 0.27 5.9E-06 53.5 18.1 182 1-185 42-255 (386)
364 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.22 4.7E-06 51.0 16.1 110 46-158 19-129 (354)
365 PF10647 Gmad1: Lipoprotein Lp 96.2 0.65 1.4E-05 48.0 20.4 143 39-185 25-183 (253)
366 COG4467 Regulator of replicati 96.2 0.014 3E-07 51.2 6.6 45 604-648 8-52 (114)
367 PF02897 Peptidase_S9_N: Proly 96.2 0.33 7.2E-06 53.5 19.3 113 40-154 126-262 (414)
368 KOG3630 Nuclear pore complex, 96.1 0.51 1.1E-05 56.8 20.4 136 2-139 108-260 (1405)
369 smart00320 WD40 WD40 repeats. 96.1 0.019 4.1E-07 38.1 5.6 38 27-66 3-40 (40)
370 PF04053 Coatomer_WDAD: Coatom 96.1 0.13 2.8E-06 57.5 15.0 136 6-152 117-262 (443)
371 KOG3630 Nuclear pore complex, 96.0 0.064 1.4E-06 64.0 12.5 147 39-187 102-263 (1405)
372 KOG2395 Protein involved in va 95.8 0.12 2.5E-06 57.5 13.0 139 10-152 350-500 (644)
373 PF00780 CNH: CNH domain; Int 95.8 0.38 8.3E-06 49.6 16.6 124 49-177 7-148 (275)
374 PHA02713 hypothetical protein; 95.7 0.36 7.9E-06 55.7 17.4 142 5-153 303-489 (557)
375 KOG2444 WD40 repeat protein [G 95.7 0.018 4E-07 57.6 5.8 138 12-153 36-178 (238)
376 cd00216 PQQ_DH Dehydrogenases 95.7 1.1 2.4E-05 50.9 20.8 149 6-157 61-269 (488)
377 PF00930 DPPIV_N: Dipeptidyl p 95.6 1 2.2E-05 48.7 19.4 145 37-185 183-345 (353)
378 PF05096 Glu_cyclase_2: Glutam 95.5 1.5 3.4E-05 45.4 19.1 175 28-209 35-214 (264)
379 COG3490 Uncharacterized protei 95.5 0.73 1.6E-05 47.9 16.3 194 9-214 83-315 (366)
380 KOG2079 Vacuolar assembly/sort 95.4 0.051 1.1E-06 64.6 8.9 98 52-151 101-202 (1206)
381 PF08596 Lgl_C: Lethal giant l 95.4 0.91 2E-05 50.1 18.3 179 5-185 96-324 (395)
382 PF06433 Me-amine-dh_H: Methyl 95.3 1.4 3.1E-05 47.2 18.4 157 7-165 148-332 (342)
383 PF05769 DUF837: Protein of un 95.2 0.12 2.5E-06 50.8 9.5 70 579-648 89-176 (181)
384 KOG4441 Proteins containing BT 95.2 0.67 1.5E-05 53.7 17.2 144 5-154 332-501 (571)
385 KOG4441 Proteins containing BT 95.2 0.79 1.7E-05 53.1 17.8 145 6-154 285-454 (571)
386 COG3386 Gluconolactonase [Carb 95.2 0.5 1.1E-05 50.3 15.0 123 16-141 143-274 (307)
387 KOG2444 WD40 repeat protein [G 95.2 0.054 1.2E-06 54.4 7.1 104 6-111 70-177 (238)
388 PF15390 DUF4613: Domain of un 95.2 0.33 7.1E-06 54.8 13.8 139 38-187 20-175 (671)
389 COG3204 Uncharacterized protei 95.2 1.7 3.7E-05 45.5 18.0 153 1-154 92-265 (316)
390 PRK10115 protease 2; Provision 95.1 6.6 0.00014 46.6 25.2 170 2-176 134-324 (686)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 3.9 8.4E-05 47.0 22.6 201 6-213 69-337 (527)
392 COG3490 Uncharacterized protei 95.0 1.1 2.4E-05 46.7 15.9 153 1-154 120-312 (366)
393 PF12234 Rav1p_C: RAVE protein 95.0 0.63 1.4E-05 54.0 15.8 101 84-185 32-146 (631)
394 PF06433 Me-amine-dh_H: Methyl 95.0 1.7 3.7E-05 46.7 17.9 194 2-215 102-326 (342)
395 smart00340 HALZ homeobox assoc 94.8 0.03 6.6E-07 40.6 3.0 21 627-647 14-34 (44)
396 PRK13922 rod shape-determining 94.7 0.23 5E-06 52.0 10.8 72 576-648 36-109 (276)
397 PF14583 Pectate_lyase22: Olig 94.7 3.7 8.1E-05 44.9 19.9 174 17-195 169-378 (386)
398 KOG1916 Nuclear protein, conta 94.6 0.037 8E-07 64.5 4.6 154 58-214 151-328 (1283)
399 KOG2079 Vacuolar assembly/sort 94.5 0.13 2.9E-06 61.2 9.1 79 92-173 98-178 (1206)
400 PF14870 PSII_BNR: Photosynthe 94.5 6.1 0.00013 42.1 20.8 144 36-185 143-293 (302)
401 PF08596 Lgl_C: Lethal giant l 94.5 0.8 1.7E-05 50.5 14.6 135 76-212 81-246 (395)
402 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.5 4.2 9.1E-05 46.7 21.0 142 17-158 272-496 (527)
403 TIGR03074 PQQ_membr_DH membran 94.4 7 0.00015 46.9 23.3 111 6-119 194-352 (764)
404 KOG1897 Damage-specific DNA bi 94.4 2.7 5.8E-05 50.3 19.0 165 17-185 751-931 (1096)
405 PF14727 PHTB1_N: PTHB1 N-term 94.4 11 0.00023 42.1 23.1 145 6-152 37-204 (418)
406 PF05694 SBP56: 56kDa selenium 94.3 2.6 5.7E-05 46.6 17.7 197 5-213 86-346 (461)
407 KOG1916 Nuclear protein, conta 94.2 0.015 3.2E-07 67.6 0.5 140 16-157 153-328 (1283)
408 KOG4499 Ca2+-binding protein R 94.1 1.9 4.2E-05 43.8 14.8 93 40-132 160-263 (310)
409 PF14775 NYD-SP28_assoc: Sperm 94.0 0.072 1.6E-06 42.6 3.8 27 622-648 30-56 (60)
410 TIGR02604 Piru_Ver_Nterm putat 93.8 1.8 3.9E-05 47.2 15.9 139 40-185 16-201 (367)
411 PHA03098 kelch-like protein; P 93.7 2 4.4E-05 49.1 16.5 141 6-154 295-466 (534)
412 PF08728 CRT10: CRT10; InterP 93.5 1.8 3.9E-05 50.9 15.5 119 83-208 102-245 (717)
413 PF12234 Rav1p_C: RAVE protein 93.5 1.6 3.5E-05 50.7 15.1 107 43-152 35-156 (631)
414 PF12709 Kinetocho_Slk19: Cent 93.4 0.88 1.9E-05 39.0 9.5 27 621-647 45-71 (87)
415 COG5276 Uncharacterized conser 93.3 12 0.00027 39.4 21.5 162 37-209 86-252 (370)
416 PF15390 DUF4613: Domain of un 93.3 2.5 5.4E-05 48.1 15.6 115 38-153 57-187 (671)
417 TIGR02604 Piru_Ver_Nterm putat 93.2 3.1 6.7E-05 45.4 16.3 136 1-141 20-202 (367)
418 PF06005 DUF904: Protein of un 93.1 0.47 1E-05 39.4 7.3 36 607-646 18-53 (72)
419 PF10168 Nup88: Nuclear pore c 93.1 2.3 4.9E-05 50.6 15.8 81 82-162 85-189 (717)
420 PF12894 Apc4_WD40: Anaphase-p 93.0 0.35 7.6E-06 36.7 6.0 33 121-153 10-42 (47)
421 COG3204 Uncharacterized protei 92.8 5.3 0.00011 42.0 16.1 114 38-154 86-212 (316)
422 KOG2247 WD40 repeat-containing 92.8 0.013 2.9E-07 64.2 -2.8 133 2-139 42-176 (615)
423 PF10214 Rrn6: RNA polymerase 92.7 5.6 0.00012 47.8 18.8 127 37-166 145-290 (765)
424 PF10224 DUF2205: Predicted co 92.4 0.52 1.1E-05 39.9 6.9 42 602-647 18-59 (80)
425 PF10146 zf-C4H2: Zinc finger- 92.4 0.89 1.9E-05 46.3 9.9 48 600-647 49-103 (230)
426 PF13449 Phytase-like: Esteras 92.2 10 0.00023 40.6 18.4 148 36-185 18-232 (326)
427 PF05694 SBP56: 56kDa selenium 92.0 2.2 4.8E-05 47.1 12.9 127 15-141 221-392 (461)
428 PF10647 Gmad1: Lipoprotein Lp 92.0 4.3 9.4E-05 41.9 14.7 101 83-185 25-129 (253)
429 PF12894 Apc4_WD40: Anaphase-p 92.0 0.5 1.1E-05 35.8 5.6 33 81-114 11-43 (47)
430 KOG2280 Vacuolar assembly/sort 91.9 2.8 6.1E-05 48.8 14.0 49 18-70 66-114 (829)
431 PHA02713 hypothetical protein; 91.8 1.7 3.6E-05 50.3 12.5 141 5-154 351-535 (557)
432 PF10226 DUF2216: Uncharacteri 91.7 0.51 1.1E-05 45.9 6.8 28 620-647 50-77 (195)
433 PF10392 COG5: Golgi transport 91.7 1.1 2.4E-05 41.6 9.0 59 582-641 37-95 (132)
434 KOG2377 Uncharacterized conser 91.5 9.3 0.0002 42.4 16.6 137 42-184 27-170 (657)
435 PF08826 DMPK_coil: DMPK coile 91.4 2.7 5.9E-05 33.7 9.5 55 591-646 3-60 (61)
436 PF01166 TSC22: TSC-22/dip/bun 91.4 0.43 9.3E-06 37.5 4.7 28 620-647 16-43 (59)
437 PRK10115 protease 2; Provision 91.3 24 0.00052 42.0 21.7 112 38-152 127-255 (686)
438 PF14870 PSII_BNR: Photosynthe 91.3 23 0.00049 37.8 20.4 122 77-202 140-264 (302)
439 TIGR00219 mreC rod shape-deter 91.3 0.52 1.1E-05 49.6 7.1 35 614-648 73-107 (283)
440 TIGR03548 mutarot_permut cycli 91.2 11 0.00024 40.1 17.3 135 5-143 72-233 (323)
441 KOG2377 Uncharacterized conser 91.2 2.4 5.2E-05 46.8 11.9 134 5-141 32-172 (657)
442 KOG4005 Transcription factor X 90.9 0.29 6.2E-06 49.0 4.3 28 619-646 91-118 (292)
443 PRK13684 Ycf48-like protein; P 90.8 26 0.00057 37.7 22.4 142 37-185 172-320 (334)
444 COG1792 MreC Cell shape-determ 90.8 0.73 1.6E-05 48.6 7.6 45 603-648 62-106 (284)
445 PF15294 Leu_zip: Leucine zipp 90.8 1.4 3E-05 45.9 9.3 18 630-647 130-147 (278)
446 PHA02790 Kelch-like protein; P 90.5 15 0.00034 41.5 18.5 139 6-154 272-425 (480)
447 PLN02153 epithiospecifier prot 90.3 19 0.00041 38.6 18.3 101 51-154 87-227 (341)
448 COG4026 Uncharacterized protei 90.3 2.8 6.2E-05 41.8 10.5 74 572-645 101-183 (290)
449 KOG1896 mRNA cleavage and poly 90.1 13 0.00028 45.8 17.4 182 14-208 1002-1212(1366)
450 COG3823 Glutamine cyclotransfe 90.0 11 0.00024 37.8 14.3 101 5-114 55-161 (262)
451 PLN00033 photosystem II stabil 90.0 18 0.00039 40.1 17.9 112 32-149 275-396 (398)
452 PF15397 DUF4618: Domain of un 90.0 3.1 6.7E-05 43.0 11.0 70 577-646 130-221 (258)
453 PRK14127 cell division protein 89.8 0.65 1.4E-05 41.7 5.2 32 615-646 27-58 (109)
454 TIGR03118 PEPCTERM_chp_1 conse 89.7 31 0.00067 36.7 19.8 204 1-212 29-282 (336)
455 PF07569 Hira: TUP1-like enhan 89.5 1.9 4.1E-05 43.6 9.1 65 89-154 18-97 (219)
456 TIGR03752 conj_TIGR03752 integ 89.3 0.51 1.1E-05 52.4 5.1 53 592-648 69-132 (472)
457 KOG4499 Ca2+-binding protein R 89.0 15 0.00032 37.6 14.5 133 38-176 109-262 (310)
458 COG4026 Uncharacterized protei 88.9 1.9 4E-05 43.1 8.0 32 614-645 131-162 (290)
459 TIGR03074 PQQ_membr_DH membran 88.7 40 0.00086 40.6 20.6 147 6-155 260-480 (764)
460 PF08728 CRT10: CRT10; InterP 88.7 10 0.00022 44.8 15.2 103 50-152 114-246 (717)
461 KOG1900 Nuclear pore complex, 88.7 4.3 9.4E-05 50.0 12.5 139 12-153 95-273 (1311)
462 PF14781 BBS2_N: Ciliary BBSom 88.6 12 0.00026 34.9 12.7 110 2-116 6-130 (136)
463 PHA03098 kelch-like protein; P 88.5 5.9 0.00013 45.3 13.4 142 5-154 342-513 (534)
464 PF10168 Nup88: Nuclear pore c 88.4 14 0.0003 44.1 16.4 73 39-113 86-181 (717)
465 PF14197 Cep57_CLD_2: Centroso 88.3 8 0.00017 31.8 10.3 62 580-646 7-68 (69)
466 KOG4451 Uncharacterized conser 88.0 4 8.6E-05 40.9 9.7 63 585-647 50-121 (286)
467 PF10214 Rrn6: RNA polymerase 88.0 35 0.00076 41.2 19.9 140 36-178 78-257 (765)
468 PF04841 Vps16_N: Vps16, N-ter 87.9 47 0.001 36.8 19.6 71 81-153 216-288 (410)
469 PF07334 IFP_35_N: Interferon- 87.7 0.75 1.6E-05 38.4 3.9 28 619-646 1-28 (76)
470 PF07798 DUF1640: Protein of u 87.6 6.8 0.00015 38.2 11.3 68 577-647 26-95 (177)
471 PF15254 CCDC14: Coiled-coil d 87.6 2.2 4.7E-05 49.7 8.7 99 548-647 370-477 (861)
472 PF14781 BBS2_N: Ciliary BBSom 87.4 21 0.00046 33.3 13.5 114 86-208 3-133 (136)
473 KOG4343 bZIP transcription fac 87.1 0.95 2.1E-05 50.4 5.4 40 606-648 293-332 (655)
474 PF10313 DUF2415: Uncharacteri 86.7 2.6 5.5E-05 31.4 5.8 32 123-154 1-35 (43)
475 TIGR03032 conserved hypothetic 86.6 48 0.001 35.5 17.3 90 85-178 206-315 (335)
476 COG3074 Uncharacterized protei 86.6 6.2 0.00013 32.2 8.3 12 634-645 48-59 (79)
477 smart00338 BRLZ basic region l 86.2 1.8 3.9E-05 34.9 5.3 33 616-648 31-63 (65)
478 KOG1898 Splicing factor 3b, su 85.9 53 0.0011 40.2 18.8 156 17-177 854-1029(1205)
479 PF14761 HPS3_N: Hermansky-Pud 85.8 24 0.00051 35.6 14.0 140 4-151 25-213 (215)
480 KOG1897 Damage-specific DNA bi 85.8 95 0.0021 37.9 21.7 102 52-153 501-614 (1096)
481 TIGR03547 muta_rot_YjhT mutatr 85.7 54 0.0012 35.0 18.4 40 60-102 168-210 (346)
482 PF13942 Lipoprotein_20: YfhG 85.5 4.6 9.9E-05 38.9 8.4 69 579-648 78-146 (179)
483 TIGR01834 PHA_synth_III_E poly 85.5 2.8 6E-05 44.7 7.7 53 593-645 256-316 (320)
484 PRK13684 Ycf48-like protein; P 85.5 26 0.00056 37.7 15.5 142 3-152 181-331 (334)
485 PF08961 DUF1875: Domain of un 85.1 0.27 5.8E-06 48.8 0.0 30 615-644 133-162 (243)
486 PF12808 Mto2_bdg: Micro-tubul 85.1 1.9 4.1E-05 33.4 4.6 26 621-646 25-50 (52)
487 PF14655 RAB3GAP2_N: Rab3 GTPa 85.0 8.2 0.00018 42.9 11.5 44 77-120 303-346 (415)
488 PRK15422 septal ring assembly 85.0 6.3 0.00014 33.1 7.9 16 625-640 46-61 (79)
489 PRK10884 SH3 domain-containing 84.4 5.6 0.00012 40.0 9.0 12 571-582 90-101 (206)
490 PF15290 Syntaphilin: Golgi-lo 84.1 10 0.00022 39.3 10.7 91 554-647 48-139 (305)
491 PF07798 DUF1640: Protein of u 84.0 12 0.00025 36.6 10.9 21 612-632 85-105 (177)
492 PF09755 DUF2046: Uncharacteri 83.9 2.8 6E-05 44.3 6.8 50 587-640 227-276 (310)
493 PF10313 DUF2415: Uncharacteri 83.8 4.2 9.2E-05 30.2 5.8 32 39-70 2-35 (43)
494 PF07569 Hira: TUP1-like enhan 83.7 7.2 0.00016 39.5 9.6 67 46-114 19-98 (219)
495 PF14761 HPS3_N: Hermansky-Pud 83.5 22 0.00049 35.8 12.7 102 52-154 30-165 (215)
496 PF14988 DUF4515: Domain of un 83.5 7.7 0.00017 38.9 9.6 66 582-647 89-171 (206)
497 PLN02193 nitrile-specifier pro 83.4 81 0.0017 35.6 18.9 141 6-154 229-412 (470)
498 KOG4460 Nuclear pore complex, 83.1 25 0.00054 39.8 13.8 74 83-156 105-202 (741)
499 KOG2129 Uncharacterized conser 82.9 3.2 6.8E-05 45.1 6.8 48 601-648 253-301 (552)
500 PLN02153 epithiospecifier prot 82.6 52 0.0011 35.2 16.4 146 5-154 85-286 (341)
No 1
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-58 Score=479.38 Aligned_cols=542 Identities=28% Similarity=0.366 Sum_probs=422.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.|++.+.|||+++..|.|.|+.+.++....+|....+..|+-+.|++..+++|.+++++|.|.+||+.+..+..++...|
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence 37889999999999999999999999988888876788999999999999999999999999999999998888899999
Q ss_pred CCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 81 ~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
..+...|||+| +..+|++.+.|+.|.+||++..+....+....+...++|.++|.+|++|...|.|+.||++..+.|+.
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 99999999999 88899999999999999999988888888999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccccCcccCCCCCCCCCCCCCCCC
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss~~~~sss~ss~ta~s~g~~~ 239 (648)
++. .|...|++|+|.+.- .+++-.. +-.++.. ...++.. . .........
T Consensus 288 v~s--ah~~sVt~vafq~s~-tvltkss-----ln~G~~~-------------~~~~vn~-----~-----s~~~~aat~ 336 (673)
T KOG4378|consen 288 VRS--AHDASVTRVAFQPSP-TVLTKSS-----LNSGDNQ-------------QNGSVNS-----S-----SNATGAATE 336 (673)
T ss_pred Eee--ecccceeEEEeeecc-eeeeccc-----cccCccC-------------CCceecc-----c-----cccccccCC
Confidence 998 788889999999853 3322211 0000000 0000000 0 000001111
Q ss_pred CCccCCCCCCCCCcccCCCCCCcceeccCCCCCCCCCCccccccccccCcCCCCCccccCCCCCCc-CCCCCCCCCCCcc
Q 006360 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAK-KDHLPIDKKPSSM 318 (648)
Q Consensus 240 si~~~s~~~~tP~~~~l~~g~~~~~l~~~r~~~~~~~d~~vfsPl~dv~~~~~s~~~~~~~~~g~~-~~~~~~~~~~~~~ 318 (648)
...+....+++| +.++|+..|...+++-+..-+..++|.+|.|.+++..++. |.+..|.. .|.+..+.+++
T Consensus 337 g~rNsgiVe~aP-~~~l~~s~p~~~lsa~~~~ts~~~~~~g~p~iI~~ds~~k-----~~Ds~G~n~~d~~~~d~g~S-- 408 (673)
T KOG4378|consen 337 GPRNSGIVERAP-SDELRKSIPANLLSAQNQLTSLGYGVSGTPTIIRRDSFCK-----FLDSQGPNAVDRMSTDLGAS-- 408 (673)
T ss_pred CCccccchhcCc-hhhhhhccCchhhhhhccccccccCccCCCceeehhhhhh-----hhhccCCccccceeeccCcc--
Confidence 223455668888 6899999999999998888888899999999999888777 76666754 57777777774
Q ss_pred cCCCCCCCCCCCCCCCCcccccc-cCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCccccccccchhhhhccCCCC
Q 006360 319 LFPSSSRRFPYAEDGSNEHSVFD-WKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLN 397 (648)
Q Consensus 319 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (648)
+ |.+..+ ||+| |.+-.- |.++.+++ + |+++ +|.++-...-
T Consensus 409 ----S-----~gD~fs---PIrDD~~~~n~--------------------K~~d~~~~--k---Gd~f--~f~p~~ns~f 449 (673)
T KOG4378|consen 409 ----S-----YGDSFS---PIRDDWETLNR--------------------KPQDYETA--K---GDRF--SFCPPVNSGF 449 (673)
T ss_pred ----c-----ccccCC---ccccchhhcCC--------------------CCCchhcc--c---cCcc--ccccccccCC
Confidence 1 111111 6664 442221 22333333 1 3333 1221111111
Q ss_pred CCCccccccCCccCccCcccccccccccccccccccCCCcccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccc
Q 006360 398 MPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGIL 477 (648)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (648)
.|.|-.. .++..+++.|+|.+.| ....++..-..+-.+.++..+ +.++.++++| |.+.. +-++.++++.
T Consensus 450 sp~~n~V-~Ss~ttS~~~~spl~d-f~~s~G~~~~~n~~lt~e~~~--~~s~~~e~~s----d~~~~---s~kl~t~gv~ 518 (673)
T KOG4378|consen 450 SPVDNSV-NSSTTTSLQRNSPLKD-FSNSSGDGKLMNIALTDELCE--EQSANIEVAS----DTGGG---SDKLNTPGVD 518 (673)
T ss_pred CcccCcc-cccccchhhccCcccc-ccCCCCcchhhcccccchHHH--Hhhcceeeec----cCCCC---cccccCCCCC
Confidence 2444443 4558899999999999 777778877777777666554 7788888883 33322 2357788888
Q ss_pred cCCCCCCCCCCcCCCCCCCCCcccccccccccCCccccCCCcccCCchhhHHHHhhcccccCCcccccCCCCCCCCCCCC
Q 006360 478 GSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGM 557 (648)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (648)
..+++.+- +.+ ++.|+ +.+|+++|.+++--.+--++|++||++.|- +.....+++.|..+.+||++
T Consensus 519 a~gn~~~~-~lS-N~TRn--s~~~~~~i~~~s~~~~L~~~p~i~ksss~n----------~p~~~~a~~ag~~s~l~~~v 584 (673)
T KOG4378|consen 519 AEGNRRLR-LLS-NATRN--STPHHANITPQSSNPLLKPQPLIAKSSSGN----------LPAQMDADWAGEFSELRDFV 584 (673)
T ss_pred Cccccccc-ccc-ccccc--CCcccccCCCcccCccccCCcccccCCCCC----------CchhhhhhhhhhhHHHHHHH
Confidence 87877776 333 89999 999999999999554445999999999982 55566788999999999999
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 558 SQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSL 637 (648)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~l 637 (648)
.|.+.- +++-.+-+.|++|+||++++++||+||.++|+|||||||||||||||+.+||+.|++.|.||+. |++|+|.|
T Consensus 585 ~qs~~~-~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~-l~aelk~l 662 (673)
T KOG4378|consen 585 DQSCEK-VEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEM-LKAELKFL 662 (673)
T ss_pred Hhhhhh-HHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHH
Confidence 988665 5556667999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHhh
Q 006360 638 RKENHQLRQL 647 (648)
Q Consensus 638 r~e~~~lr~~ 647 (648)
|||||+||+-
T Consensus 663 reenq~lr~~ 672 (673)
T KOG4378|consen 663 REENQTLRCG 672 (673)
T ss_pred HHhhhhhhcc
Confidence 9999999974
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.7e-28 Score=250.00 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=179.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd-g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
.|+.|++.|++|+.+|.++||+..+...+++|.+ |...|.++.|+|. ....+++|+.||+|++|++.+..+ +..+.+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~-l~~l~g 259 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP-LQDLEG 259 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-hhhhhc
Confidence 3899999999999999999999999999999998 7778889999998 355799999999999999988764 678999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~-~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
|...|..++|+|+|++|++++.|.+-++||++++..+. .-+|...|.+++|++||.++++|+.|..-+|||++++. ++
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence 99999999999999999999999999999999987654 44799999999999999999999999999999999994 34
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
..+. +|...|.+|+|+|+|-.||++ +.|++++|||++.......+..
T Consensus 339 m~L~--gH~k~I~~V~fsPNGy~lATg------------s~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 339 MFLA--GHIKEILSVAFSPNGYHLATG------------SSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred EEec--ccccceeeEeECCCceEEeec------------CCCCcEEEeeecccccceeccc
Confidence 4455 899999999999976666555 6699999999999888655443
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.7e-28 Score=249.98 Aligned_cols=201 Identities=21% Similarity=0.269 Sum_probs=179.4
Q ss_pred ccCC--CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 2 FSpd--G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
|+|. +..||+|+.||+|++|++.+...+..+.+ |...|..|+|+|+|+ +|++++.|.+-++||+.++.. +....+
T Consensus 225 fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~E-lL~QEG 301 (459)
T KOG0272|consen 225 FHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSE-LLLQEG 301 (459)
T ss_pred EccCCCccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCCc-eeeecccccchhhcccccchh-hHhhcc
Confidence 7886 56899999999999999988889999987 667788899999999 899999999999999999875 566789
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
|...|.+|+|++||.++++|+.|..-+|||+++|+++..+ +|...|..|.|+|+|..|++|+.|++++|||++.... +
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-l 380 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-L 380 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-c
Confidence 9999999999999999999999999999999999999887 6999999999999999999999999999999998753 3
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
.++ .+|.+-|+.|+|.|+ .+.+|++++.|+++++|..+.+.+..++.-
T Consensus 381 y~i--pAH~nlVS~Vk~~p~-----------~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 381 YTI--PAHSNLVSQVKYSPQ-----------EGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred eec--ccccchhhheEeccc-----------CCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 333 489999999999984 455667778899999999998888766543
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=4.4e-27 Score=260.18 Aligned_cols=196 Identities=18% Similarity=0.274 Sum_probs=177.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.|+|+.++|++++.|++|++|.+.+..++..+++ |..+|.+|.|+|.|- +|++++.|++.++|......+ .+.+.+|
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P-lRifagh 534 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP-LRIFAGH 534 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCce-EEEecCCCceeeeeecccCCc-hhhhccc
Confidence 4899999999999999999999999999999986 888999999999985 899999999999999988775 7889999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
-+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+ +|.++|.+++|+|+|.+|++|+.||.|.|||+.++. ++.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~ 613 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVK 613 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-chh
Confidence 999999999999999999999999999999999999988 699999999999999999999999999999999974 334
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
.+. +|.+.|.+|.|+.+|.+||++ +.|+.|++||+......
T Consensus 614 ~l~--~Ht~ti~SlsFS~dg~vLasg------------g~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 614 QLK--GHTGTIYSLSFSRDGNVLASG------------GADNSVRLWDLTKVIEL 654 (707)
T ss_pred hhh--cccCceeEEEEecCCCEEEec------------CCCCeEEEEEchhhccc
Confidence 444 789999999999976666555 56999999999754443
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-26 Score=238.22 Aligned_cols=282 Identities=15% Similarity=0.210 Sum_probs=216.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+|+|.+|++|+.|.++++||+.+...+.+.++ |..-|.||+|+||++ .|++|+.||.|++||.+++++....+.+|
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGH 199 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCc
Confidence 4899999999999999999999999999999997 788999999999999 89999999999999999998888899999
Q ss_pred CCCeEEEEEcc-----CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 81 SAPTAGISFSS-----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 81 ~~~V~slafsP-----dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
...|++++|.| ..++|++++.||.|+|||+..++++.++ +|..+|+|++|--+| +|++|+.|++|++|+...+
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccch
Confidence 99999999976 5679999999999999999999988877 799999999997654 8999999999999999886
Q ss_pred CCceEEEeecCCCCCeeEEEEccC-----------CCe---------------EEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 155 PQPLTVLRACSSSEAVSSLCWQRA-----------KPV---------------FIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 155 ~~~~~~l~~~~h~~~VtsLafspd-----------g~~---------------Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
.+.+.++ +|...|+.|+.+.+ +++ -+++ ...+..++++++|.++.+|+.
T Consensus 279 -~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~--~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 279 -KLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL--KDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred -hHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh--ccCcceeEEecCCceEEEecc
Confidence 4556666 88889999988743 222 1111 112356899999999999987
Q ss_pred CCCCCc-cccccCcccCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccCCCCCCcceeccCCCCCCCCCCcccccc---c
Q 006360 209 LPSVTT-SSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSP---L 284 (648)
Q Consensus 209 r~~~~~-ss~ss~~~~sss~ss~ta~s~g~~~si~~~s~~~~tP~~~~l~~g~~~~~l~~~r~~~~~~~d~~vfsP---l 284 (648)
.....+ ...+- | ..+ + -...||| +
T Consensus 354 ~~~kkpi~rmtg-----------------------------------H----q~l--V-----------n~V~fSPd~r~ 381 (480)
T KOG0271|consen 354 FKSKKPITRMTG-----------------------------------H----QAL--V-----------NHVSFSPDGRY 381 (480)
T ss_pred cccccchhhhhc-----------------------------------h----hhh--e-----------eeEEECCCccE
Confidence 543311 11000 0 000 0 0023455 4
Q ss_pred cccCcCCCCCccccCCCCCCcCCCCCCCCCCCc-ccCCCCCCCCCCCCCCCCcccccccCC
Q 006360 285 VDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSS-MLFPSSSRRFPYAEDGSNEHSVFDWKS 344 (648)
Q Consensus 285 ~dv~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~ 344 (648)
++--+.+.| ++.|++..|..-..|-.|.-+.- ++| |..-||-+...-+....+|+-++
T Consensus 382 IASaSFDkS-VkLW~g~tGk~lasfRGHv~~VYqvaw-saDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 382 IASASFDKS-VKLWDGRTGKFLASFRGHVAAVYQVAW-SADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEEeecccc-eeeeeCCCcchhhhhhhccceeEEEEe-ccCccEEEEcCCCceEEEEEeee
Confidence 443444444 45588888887777776754421 347 77777777777777777766553
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-25 Score=223.10 Aligned_cols=198 Identities=20% Similarity=0.322 Sum_probs=170.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H 80 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~-H 80 (648)
.++||++.++++.|+.+++||+.+++..+.|.+ |...|.+++|++|.+ .|++|+.|++|++|++.+... ...... |
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-~t~~~~~~ 147 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-YTIHEDSH 147 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE-EEEecCCC
Confidence 578999999999999999999999999999997 677788899999998 899999999999999988763 333333 3
Q ss_pred CCCeEEEEEccC--CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc
Q 006360 81 SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 81 ~~~V~slafsPd--g~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
.+.|.|++|+|+ ..+|++++.|++|++||+++.+....+ +|.+.++.+.++|||.++++|+.||.+.+||++.++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~- 226 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN- 226 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence 889999999995 789999999999999999998877655 7999999999999999999999999999999999854
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
+....|...|.+++|+|+.-+|+ ...+..|+|||+........+..
T Consensus 227 ---lysl~a~~~v~sl~fspnrywL~-------------~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 227 ---LYSLEAFDIVNSLCFSPNRYWLC-------------AATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred ---eEeccCCCeEeeEEecCCceeEe-------------eccCCceEEEeccchhhhhhccc
Confidence 44447899999999999654443 34577799999988777665544
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.7e-26 Score=233.42 Aligned_cols=207 Identities=15% Similarity=0.230 Sum_probs=173.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc-----CCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-----NSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafsp-----dg~~lLaSgs~Dg~V~IWDl~t~~~~v~ 75 (648)
+|+|||+.||+|+.||.|++||.++|+++..--..|...|++++|.| ..+ +|++++.||.|+|||+..+.+ +.
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-~~ 241 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-VR 241 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE-EE
Confidence 58999999999999999999999999887654445889999999976 345 899999999999999998875 78
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEe-----------CCCC--------
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI-----------DDDW-------- 135 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafs-----------PdG~-------- 135 (648)
.+.+|+..|+|++|-- ..+|++++.|++|++|+...|++...+ +|..+|+.++++ |.++
T Consensus 242 ~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred EeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 8999999999999974 458999999999999999999988777 688899988876 2233
Q ss_pred -----------------EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc-----------
Q 006360 136 -----------------ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT----------- 187 (648)
Q Consensus 136 -----------------~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~----------- 187 (648)
.|++|+.|.++.+|+....++++.... +|...|..+.|+||++|+|+++.
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 499999999999999998877777666 89999999999999999988533
Q ss_pred -------------------CCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 188 -------------------CKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 188 -------------------~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
..+..++++++.|.++++||++...
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 2445566777777777777766433
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=6.4e-24 Score=212.39 Aligned_cols=197 Identities=19% Similarity=0.248 Sum_probs=171.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASG------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg------~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v 74 (648)
||+|.|+++|+|+.|+...||++.+. ...+++.+ |...+.|+.|..|+. |++++.|.++.+||+++++. +
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-HtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~-~ 179 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQ-T 179 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccccccceeeeeecC-ccceeEEEEEcCCCc--eEecCCCceEEEEEcccceE-E
Confidence 79999999999999999999999754 23445665 888999999998764 99999999999999999985 7
Q ss_pred EEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 75 ~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
..+.+|.+.|.+++++| +++.+++|+.|+..++||++.+.+++.+ +|+..|+.++|.|+|.-+++|+.|++.++||+|
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 88999999999999999 9999999999999999999999999888 699999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 153 s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
.. +.+.++........|++++|+..|++|..+ ..|..+.+||.....-.
T Consensus 260 aD-~~~a~ys~~~~~~gitSv~FS~SGRlLfag------------y~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 260 AD-QELAVYSHDSIICGITSVAFSKSGRLLFAG------------YDDFTCNVWDTLKGERV 308 (343)
T ss_pred CC-cEEeeeccCcccCCceeEEEcccccEEEee------------ecCCceeEeeccccceE
Confidence 87 445566555556789999999976666554 55889999998755443
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=9.5e-24 Score=235.09 Aligned_cols=201 Identities=19% Similarity=0.287 Sum_probs=172.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~--~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
.|+++|+++++++.|+.+++|++..++ ....+.+ |...|++++|+|+++ ++++++.|++|+|||+......++.+.
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec
Confidence 389999999999999999999997777 6666654 778899999999999 899999999999999955544578999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC-
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ- 156 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~- 156 (648)
+|...|++++|+|++++|++|+.|++|+|||+++++++..+ .|...|++++|++++++|++++.|+.|+|||+.++..
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 99999999999999999999999999999999999999888 5999999999999999999999999999999999853
Q ss_pred ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 157 PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 157 ~~~~l~~~~h~~--~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
+...+. .+.. ++++++|+|++.|++++ ..|+.+++||+.........
T Consensus 324 ~~~~~~--~~~~~~~~~~~~fsp~~~~ll~~------------~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 324 CLKLLS--GAENSAPVTSVQFSPNGKYLLSA------------SLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred eeeccc--CCCCCCceeEEEECCCCcEEEEe------------cCCCeEEEEEccCCcceeee
Confidence 233444 3333 59999999976666554 66999999999866655443
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=8.1e-25 Score=226.67 Aligned_cols=191 Identities=19% Similarity=0.275 Sum_probs=171.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|+++|.++++|+.+|.|++|+. +...+..++.+|...|++++|+|++. .|++|++||+|+|||....+. ...+.+|.
T Consensus 146 ws~~g~wmiSgD~gG~iKyWqp-nmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e~vL~GHg 222 (464)
T KOG0284|consen 146 WSHNGTWMISGDKGGMIKYWQP-NMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-ERVLRGHG 222 (464)
T ss_pred EccCCCEEEEcCCCceEEeccc-chhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-hheeccCC
Confidence 7899999999999999999997 67778888888889999999999777 899999999999999977664 45679999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
-.|.+++|+|...+|++++.|..|++||.+++.|+..+ .|+..|..+.|++++++|++++.|..+++||+++.+ .+.+
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-El~~ 301 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-ELFT 301 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-HHHH
Confidence 99999999999999999999999999999999998776 699999999999999999999999999999999653 2344
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
++ +|...|+++.|+|- ...++.+++.|+.|..|.+.
T Consensus 302 ~r--~Hkkdv~~~~WhP~-----------~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 302 YR--GHKKDVTSLTWHPL-----------NESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hh--cchhhheeeccccc-----------cccceeeccCCCceEEEecc
Confidence 44 89999999999994 55677778889999999887
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=3.1e-23 Score=218.15 Aligned_cols=199 Identities=17% Similarity=0.270 Sum_probs=171.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------- 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~------- 73 (648)
+||.+|..||+|..||.++||+. +|.++..+.. |.++|..++|+.+|. +|++++.|+++.|||..++...
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEec-Cchhhhhhhc-cCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeecc
Confidence 58999999999999999999996 7888888875 888999999999998 8999999999999998544322
Q ss_pred ---------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-
Q 006360 74 ---------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI- 119 (648)
Q Consensus 74 ---------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~- 119 (648)
+..+.+|.+.|.++.|+|.+.+|++|+.|++++||......++..+
T Consensus 319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 3357789999999999999999999999999999999888777665
Q ss_pred eCCCCeEEEEEeCC---------CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 120 TYEAPFSSLAFIDD---------DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 120 ~h~~~I~slafsPd---------G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
.|...|..+.|+|+ +..|++++.|++|++||+..+ .++..+. .|..+|++|+|+|+|+|++++
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~--kH~~pVysvafS~~g~ylAsG----- 470 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLM--KHQEPVYSVAFSPNGRYLASG----- 470 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeec--cCCCceEEEEecCCCcEEEec-----
Confidence 68999999999985 457999999999999999988 4445544 799999999999988887766
Q ss_pred CeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 191 ETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 191 ~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
+.|+.|.+|+.+...-..++
T Consensus 471 -------s~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 471 -------SLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred -------CCCCeeEeccccchheeEee
Confidence 66999999999876655443
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=1.2e-23 Score=233.08 Aligned_cols=196 Identities=14% Similarity=0.231 Sum_probs=172.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-------------------------------eeEEEeCCCCCcEEEEEEccCCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA-------------------------------KAAELKDPNEQVLRVLDYSRNSR 50 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~-------------------------------~i~~l~~~~~~~V~~Vafspdg~ 50 (648)
|++|+.+||.|-.|..|++|.+...+ ...++.+ |.++|..+.|+|+.+
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G-H~GPVyg~sFsPd~r 464 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG-HSGPVYGCSFSPDRR 464 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec-CCCceeeeeeccccc
Confidence 78899999999999999999986311 1123444 788999999999998
Q ss_pred eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEE
Q 006360 51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA 129 (648)
Q Consensus 51 ~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~sla 129 (648)
+|++|+.|++|++|.+.+..+ +...++|..+|+++.|+|.|.||++++.|++.++|.....++.+++ +|.+.|.|+.
T Consensus 465 -fLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~ 542 (707)
T KOG0263|consen 465 -FLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS 542 (707)
T ss_pred -ceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence 899999999999999999986 4567899999999999999999999999999999999998888877 6999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 130 fsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
|+|+.+|+++|+.|.+|++||+.++ ..++++. +|.++|++|+|+|+|++|+++ +.|+.|++||+.
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~--GH~~~V~al~~Sp~Gr~LaSg------------~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFT--GHKGPVTALAFSPCGRYLASG------------DEDGLIKIWDLA 607 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCC-cEEEEec--CCCCceEEEEEcCCCceEeec------------ccCCcEEEEEcC
Confidence 9999999999999999999999998 4567776 899999999999988887776 569999999998
Q ss_pred CCCCcc
Q 006360 210 PSVTTS 215 (648)
Q Consensus 210 ~~~~~s 215 (648)
......
T Consensus 608 ~~~~v~ 613 (707)
T KOG0263|consen 608 NGSLVK 613 (707)
T ss_pred CCcchh
Confidence 655443
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=7.3e-23 Score=203.82 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=163.5
Q ss_pred CCEEEEEECCCcEEEEECCC-----CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 6 DEHLASISLSGDLILHNLAS-----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~s-----g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
-+.|++++.|..+.+|++.. |..++.+.+ |...|..+..+++++ ++++++.|+++++||+.+++. .+.+.+|
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~-t~~f~GH 104 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGES-TRRFVGH 104 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCc-eEEeccccceEEEEEecCCcE-EEEEEec
Confidence 46788999999999998753 566788887 888999999999998 899999999999999999864 6789999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEeCC--CCEEEEEEcCCeEEEEECCCCCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~--h~~~I~slafsPd--G~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
...|.+++|++|...|++|+.|++|++||+.......... +..+|.|+.|+|+ ..+|+.++.|++|++||+++. +
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~ 183 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-Q 183 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-c
Confidence 9999999999999999999999999999998765554443 3789999999997 789999999999999999987 3
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
....+ .+|.+.++.++++|||..++++ ..|+.+.+||++.-..
T Consensus 184 l~~~~--~gh~~~v~t~~vSpDGslcasG------------gkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 184 LRTTF--IGHSGYVNTVTVSPDGSLCASG------------GKDGEAMLWDLNEGKN 226 (315)
T ss_pred hhhcc--ccccccEEEEEECCCCCEEecC------------CCCceEEEEEccCCce
Confidence 33333 4899999999999987777665 5599999999986554
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=210.85 Aligned_cols=206 Identities=18% Similarity=0.291 Sum_probs=177.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
++.|-+++|++|+.|++|.|||+.+|++..++.+ |-..|+.|++++... ++++++.|+.|+.||+..++. ++...+|
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkv-IR~YhGH 234 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKV-IRHYHGH 234 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCc-eEEEecCCCeeEEEechhhhh-HHHhccc
Confidence 4678889999999999999999999999999987 778899999999888 899999999999999998874 6788999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
-..|+|++.+|.-..|++|+.|.++++||+++...+.++ +|..+|..+.+.|-...+++|+.|++|++||++.++. ..
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~ 313 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MI 313 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eE
Confidence 999999999999999999999999999999999888877 5999999999999888899999999999999999843 33
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccC----------------------------CCCeEEEEeeCCCeEEcCCCCCC
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTC----------------------------KAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~----------------------------~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
.+. .|...|.+++.+|....+|+++.+ ....++++|+..+.|.+||-+..
T Consensus 314 tlt--~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 314 TLT--HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eee--cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcC
Confidence 333 689999999999876655553221 23446778888889999988754
Q ss_pred C
Q 006360 212 V 212 (648)
Q Consensus 212 ~ 212 (648)
-
T Consensus 392 ~ 392 (460)
T KOG0285|consen 392 H 392 (460)
T ss_pred c
Confidence 3
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=5.2e-23 Score=206.57 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=172.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~-sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
.|+|+|.+||+|+.|..|.+|++. ..+....+++ |.+.|..+.|.+|+. .|++++.|++|+.||+++++. +..+++
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~-~rk~k~ 130 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKR-IRKHKG 130 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCC-EEEEecCCceEEEEeccccee-eehhcc
Confidence 489999999999999999999964 3344556665 888999999999998 799999999999999999985 778899
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 80 H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
|...|+.++-+. .-.++.+++.|+++++||+++..+++++.....++++.|..++..+.+|+-|+.|++||++.. ...
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~ 209 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGL 209 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccC-cce
Confidence 999999998554 446778899999999999999999999988999999999999999999999999999999987 344
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
.++. +|..+|+.|..+++|.++ ++.+.|.++++||++++.+...
T Consensus 210 ~~ls--Gh~DtIt~lsls~~gs~l------------lsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 210 YTLS--GHADTITGLSLSRYGSFL------------LSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEee--cccCceeeEEeccCCCcc------------ccccccceEEEEEecccCCCCc
Confidence 5566 999999999999966655 4557799999999999998765
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.4e-22 Score=223.83 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=166.1
Q ss_pred CccCCCCEEEEEECCCcEEEEEC-CCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl-~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
+|+||++++++++.|++|+|||+ ..+..++.+.+ |...|++++|+|+++ ++++|+.|++|+|||++++++ +..+.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~-~~~l~~ 286 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGEC-VRKLKG 286 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeE-EEeeec
Confidence 59999999999999999999999 55588889986 777889999999995 999999999999999999775 788999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeEe-eCCC--CeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI-TYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk--~v~~~-~h~~--~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
|...|.+++|++++++|++++.|+.|++||+.++. ++..+ .+.. .+++++|+|++.+|++++.|+.|++||++..
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999999999999999998 44554 3333 5899999999999999999999999999987
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 155 ~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
. ....+. +|...+.++ |++. ...++.++++++.|+.|++||+........+
T Consensus 367 ~-~~~~~~--~~~~~~~~~-~~~~--------~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 367 K-SVGTYT--GHSNLVRCI-FSPT--------LSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred c-ceeeec--ccCCcceeE-eccc--------ccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 4 334444 455543221 1111 1236667788888999999999865544443
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=3.3e-22 Score=196.38 Aligned_cols=200 Identities=13% Similarity=0.193 Sum_probs=168.4
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeE
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTA 85 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~-~v~~l~~H~~~V~ 85 (648)
-+|++++.|-+|++|...+|.+.++++ |...-|+.+...|+++ +|++++. ..|++||+.+..+ .+..+.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 378999999999999999999999998 4677889999999998 6777665 7799999987765 6788999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS 165 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~ 165 (648)
.+.|..+|+++++|++||+++|||++...+.+.+.+..+|+++..+|+...|++|..+|.|+|||+.........+. .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--e 165 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--E 165 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC--C
Confidence 99999999999999999999999999988888899999999999999999999999999999999997633222222 3
Q ss_pred CCCCeeEEEEccCCCeEEEe------------------------------------ccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 166 SSEAVSSLCWQRAKPVFIDE------------------------------------TTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 166 h~~~VtsLafspdg~~Las~------------------------------------~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
....|.++...|||.+++.. -.+.+..+|++++.|.+++||...
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 44667777777777776652 223456677777888999999887
Q ss_pred CC
Q 006360 210 PS 211 (648)
Q Consensus 210 ~~ 211 (648)
.+
T Consensus 246 ~~ 247 (311)
T KOG0315|consen 246 DF 247 (311)
T ss_pred Cc
Confidence 76
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=199.02 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=170.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--C---ceeEE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--S---PKVSW 76 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~--~---~~v~~ 76 (648)
|++|.++|++++.||.+.|||..+...+..+.. ....|-.++|+|.++ ++++|+-|+...||++.+. + .+.+.
T Consensus 63 ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 63 WSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred ecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCC-eEEecCcCceeEEEecccccccccceeeee
Confidence 789999999999999999999988888877775 445667789999998 8999999999999999754 2 33567
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCC
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~ 154 (648)
+.+|.+.+.|+.|.. ..+|++++.|.++.+||+++++.+..+ +|.+.|.++.+.| +++.+++|+-|+..+|||+|..
T Consensus 141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 899999999999986 667899999999999999999988887 6999999999999 9999999999999999999998
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 155 ~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
..++.+. +|...|.+|+|.|+|.-+ ++|+.|++.++||+|.......
T Consensus 220 -~c~qtF~--ghesDINsv~ffP~G~af------------atGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 220 -QCVQTFE--GHESDINSVRFFPSGDAF------------ATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred -ceeEeec--ccccccceEEEccCCCee------------eecCCCceeEEEeecCCcEEee
Confidence 4445544 999999999999966554 5557799999999997555443
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=4.6e-22 Score=195.33 Aligned_cols=196 Identities=11% Similarity=0.147 Sum_probs=164.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.|..||+.+++|+.||+++|||++...+.+.++ +...|++|..+|+.. -|++|..+|.|+|||+....+....+...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCC
Confidence 378999999999999999999999877777776 568999999999876 68999999999999998876544555566
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce------eeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~------v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
...|.++...|||.+++.+.+.|.+++|++-.... +..+ .|.+.+..+.++||+++|++++.|.+|+||+..+
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 67899999999999999999999999999876432 2222 4889999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 154 ~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
.-+....+. +|...++..+|+-||.||++ ++.|..+++||+.....
T Consensus 247 ~~kle~~l~--gh~rWvWdc~FS~dg~YlvT------------assd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 247 FFKLELVLT--GHQRWVWDCAFSADGEYLVT------------ASSDHTARLWDLSAGKE 292 (311)
T ss_pred ceeeEEEee--cCCceEEeeeeccCccEEEe------------cCCCCceeecccccCce
Confidence 733334444 89999999999986666555 46699999999976554
No 20
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-22 Score=199.91 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=167.6
Q ss_pred CccCCC-CEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 1 MYNCKD-EHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 1 AFSpdG-~~Lasgs~DG~V~IwDl~s-g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+|+++. +.+++++.||.++|||+.. ...+..++. |...|.++.|++..+..+++++.|++|++||..-... +.++.
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~ 144 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFN 144 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeec
Confidence 467665 5778899999999999642 346777775 7778888999998877899999999999999977765 77899
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC-CceeeEeeCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCC
Q 006360 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 79 ~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~t-gk~v~~~~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
+|...|+...|+| ..+++++++.|+.+++||++. |+.+.+..|...|.|+.|+. +.++|++|+.|+.|++||+++.+
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 9999999999999 889999999999999999986 55555556888999999997 67789999999999999999988
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.++..+. +|.-.|..|.|+|. ...++.+++.|-+++|||..
T Consensus 225 ~pl~eL~--gh~~AVRkvk~Sph-----------~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 225 TPLFELN--GHGLAVRKVKFSPH-----------HASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ccceeec--CCceEEEEEecCcc-----------hhhHhhhccccceEEecccc
Confidence 8888875 89999999999996 45567778899999999986
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.89 E-value=5.7e-23 Score=213.03 Aligned_cols=191 Identities=15% Similarity=0.273 Sum_probs=166.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
||+|++..+++++.||+|+|||..-.+....+.+ |+-.|.+++|+|... +|++++.|..|++||.+++.+ +..+..|
T Consensus 187 afSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~c-l~tlh~H 263 (464)
T KOG0284|consen 187 AFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSC-LATLHGH 263 (464)
T ss_pred ccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccc-eeEEccCCceeEeecCCCcch-hhhhhhc
Confidence 6999999999999999999999988888788876 777889999999887 999999999999999999986 6788999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
+..|..+.|++++++|++++.|..++++|+++.+.++.+ +|+..|+++.|+| ...+|.+|+.||.|..|.+... .++
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~ 342 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPL 342 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-ccc
Confidence 999999999999999999999999999999977777666 5999999999999 4678889999999999999854 233
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
..+ .++|...|++++|+|-|.+| .+++.|+++++|.-
T Consensus 343 ~~i-~~AHd~~iwsl~~hPlGhil------------~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 343 GEI-PPAHDGEIWSLAYHPLGHIL------------ATGSNDRTVRFWTR 379 (464)
T ss_pred cCC-CcccccceeeeeccccceeE------------eecCCCcceeeecc
Confidence 322 24899999999999955544 55577999999954
No 22
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=8.4e-24 Score=222.08 Aligned_cols=250 Identities=17% Similarity=0.187 Sum_probs=216.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|+.+|++|+.|+..|+|..+|+.++++.+++. ..+.|+++.|.++.+ +++..+...++|||-.+.+ +++++.|.
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~GtE--lHClk~~~ 210 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGTE--LHCLKRHI 210 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCcE--EeehhhcC
Confidence 67899999999999999999999999999887 567899999999886 4445688999999998876 78888886
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
. |..+.|.|.+.+|++++..|.+++.|+.+|+.+..+. ..+.+..++-+|-+.++.+|+.+|+|.+|.......++++
T Consensus 211 ~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 211 R-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred c-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 5 9999999999999999999999999999999988774 6778899999999999999999999999999998777777
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccccCcccCC---CCCCCCCCCCCC
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSG---SRPNSRSGPSAE 237 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss~~~~ss---s~ss~ta~s~g~ 237 (648)
++ |.++|.+|++.++|+|+++. +.|+.|+|||+|.+..+.++.++.+... ++.++.+.+.|.
T Consensus 290 Lc---H~g~V~siAv~~~G~YMaTt------------G~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 290 LC---HRGPVSSIAVDRGGRYMATT------------GLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred Hh---cCCCcceEEECCCCcEEeec------------ccccceeEeeeccccccceeecCCCccccccccccceeeecCC
Confidence 76 99999999999988887776 4599999999999998887777444432 567788888888
Q ss_pred CCCCccCCC----CCCCCCcccCCCCCCcceeccCCCCCCCCCCccccccccccC
Q 006360 238 ASSLTVGGT----GEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288 (648)
Q Consensus 238 ~~si~~~s~----~~~tP~~~~l~~g~~~~~l~~~r~~~~~~~d~~vfsPl~dv~ 288 (648)
...++.... .-++||++|...+ +|..|+ |||++||-
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~-~V~~l~--------------FcP~EDvL 394 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGG-PVEDLR--------------FCPYEDVL 394 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCc-ccccce--------------eccHHHee
Confidence 888876543 4679999999875 888888 89999975
No 23
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=2.6e-21 Score=216.33 Aligned_cols=199 Identities=15% Similarity=0.259 Sum_probs=157.9
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006360 1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (648)
Q Consensus 1 AFSp-dG~~Lasgs~DG~V~IwDl~sg~-------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~ 72 (648)
+|+| ++++|++|+.|++|+|||+.++. .+..+.+ |...|.+++|+|++.++|++++.|++|+|||+.++..
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 4888 88999999999999999997652 4556665 7788999999998766999999999999999988764
Q ss_pred eeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCC-eEEEEEeCCCCEEEEEE----cCCeE
Q 006360 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGT----SNGRV 146 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~-I~slafsPdG~~Lasgs----~DG~V 146 (648)
+..+..|...|.+++|+|++.+|++++.|++|++||+++++.+..+ .|.+. +..+.|.+++..|++++ .|+.|
T Consensus 161 -~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 161 -VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred -EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 5678899999999999999999999999999999999999887666 45543 45788999877777654 47899
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 147 ~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
+|||+++...++..... .+...+....|++++++++. ++..|+.|++||+.....
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~l-----------ggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYI-----------GSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEE-----------EEeCCCeEEEEEeeCCce
Confidence 99999987655554431 23345556677776554433 334599999999986543
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=6.5e-22 Score=217.47 Aligned_cols=197 Identities=15% Similarity=0.257 Sum_probs=170.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-c
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-Q 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~-~ 79 (648)
+|+|||++||+|+.||+|+|||..++-|+.++.. |...|+.+.|+..++ .+++.+-||+|+.||+..... .+.+. .
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrN-fRTft~P 433 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRN-FRTFTSP 433 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCC-EEEEeecCCeEEeeeecccce-eeeecCC
Confidence 5899999999999999999999999999999986 778899999999998 899999999999999976654 33333 3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCC-eEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg-~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
-.....|++..|.|.+++.|+.|. .|.+|++++|+.+-.+ +|+++|.+++|+|+|..|++++.|.+|++||+-.....
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 345568899999999999999998 7999999999999877 79999999999999999999999999999999876555
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcc
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~s 215 (648)
+..+. +...+..++|.|+|+-++.. ..||.|.+||+.......
T Consensus 514 vEtl~---i~sdvl~vsfrPdG~elaVa------------TldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 514 VETLE---IRSDVLAVSFRPDGKELAVA------------TLDGQITFFDIKEAVQVG 556 (893)
T ss_pred eeeEe---eccceeEEEEcCCCCeEEEE------------EecceEEEEEhhhceeec
Confidence 55554 77889999999998887766 459999999997655543
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=4.7e-22 Score=218.54 Aligned_cols=193 Identities=19% Similarity=0.342 Sum_probs=170.7
Q ss_pred CccCCCCEEEEEECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~D-G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
+||..|++||.|+.. |.+-||++.+...+.+.++ |...+.+++++|||+ +|++|++||.|+|||...+-| ..++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC-~vTFte 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC-FVTFTE 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE-EEEecc
Confidence 478889999998765 8999999998888888876 778899999999999 999999999999999999886 678999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--eEEEEEeCCCCEEEEEEcCCe-EEEEECCCCCC
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--FSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQ 156 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~--I~slafsPdG~~Lasgs~DG~-V~IWDl~s~~~ 156 (648)
|+..|+.++|+..++.+++.+.||+|+.||+...++.+++....+ ..|++..|.|.++++|+.|.. |+||++.++ +
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-q 469 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-Q 469 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-e
Confidence 999999999999999999999999999999999999998865555 568888888999999998875 999999998 6
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
.+.++. +|.++|.+++|+|++..| ++++.|++|++||+-..
T Consensus 470 llDiLs--GHEgPVs~l~f~~~~~~L------------aS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 470 LLDILS--GHEGPVSGLSFSPDGSLL------------ASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeehhc--CCCCcceeeEEccccCeE------------EeccccceEEEEEeecc
Confidence 667777 999999999999966555 45577999999998654
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.6e-22 Score=204.01 Aligned_cols=190 Identities=14% Similarity=0.255 Sum_probs=170.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|-|.|++|++++.|.+|++|++.+|-++.++.+ |.+-|+.++.+.||. ++++|+.|.+|++|-+.++.+ ...++.|.
T Consensus 201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hE 277 (406)
T KOG0295|consen 201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC-KAELREHE 277 (406)
T ss_pred EEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCee-EEEecCCCceEEEEEeccchh-hhhhhccc
Confidence 568899999999999999999999999999997 777999999999998 999999999999999998876 35788999
Q ss_pred CCeEEEEEccC---------------CCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCe
Q 006360 82 APTAGISFSSD---------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (648)
Q Consensus 82 ~~V~slafsPd---------------g~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~ 145 (648)
-.|.|++|.|. +.++.+++.|++|++||+.++.++.++ +|..+|..++|+|.|+||+++..|++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 99999999763 258999999999999999999998877 69999999999999999999999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 146 V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
|+|||+++. ++++.+. .|..-|+++.|+.+. .++++|+.|.++++|.-+
T Consensus 358 lrvwdl~~~-~cmk~~~--ah~hfvt~lDfh~~~------------p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 358 LRVWDLKNL-QCMKTLE--AHEHFVTSLDFHKTA------------PYVVTGSVDQTVKVWECR 406 (406)
T ss_pred EEEEEeccc-eeeeccC--CCcceeEEEecCCCC------------ceEEeccccceeeeeecC
Confidence 999999998 5556666 789999999999854 366777889999999743
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.7e-22 Score=215.51 Aligned_cols=197 Identities=16% Similarity=0.268 Sum_probs=176.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~ 83 (648)
.--+++++|+.|..|+||+.++++.+..|.. |.+.|++++.+|... +++++++|-+|++||.+..-...+.+.+|...
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 3457899999999999999999999999997 888999999999998 89999999999999998887778899999999
Q ss_pred eEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeC--CCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 84 TAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 84 V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsP--dG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
|.+++|+| |.+.+++++-|++|++|.+....+..++ +|...|+|+.|-+ |..+|++|+.|.+|+|||..+. .+++
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~ 221 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQ 221 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHH
Confidence 99999999 8999999999999999999998888777 6999999999987 4569999999999999999987 6677
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
++. +|...|..++|+|. -.++++|+.||++++|+-..|.--.++
T Consensus 222 TLe--GHt~Nvs~v~fhp~------------lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 222 TLE--GHTNNVSFVFFHPE------------LPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred Hhh--cccccceEEEecCC------------CcEEEEecCCccEEEecCcceehhhhh
Confidence 777 89999999999994 456677788999999998877654433
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=191.89 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=164.0
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 006360 1 MYNCK-DEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVS 75 (648)
Q Consensus 1 AFSpd-G~~Lasgs~DG~V~IwDl~s---g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~ 75 (648)
||+|- |..||+++.|..|+||+... -.+...+...|...|+.|+|+|.|+ +|++++.|.++.||.-..+. ..+.
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEe
Confidence 57887 88999999999999999874 3455566677899999999999999 99999999999999875443 3377
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc---eeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR---PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk---~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
.+.+|...|.|++|+++|++||+|+.|+.|.||.+..+. +..++ .|...|..+.|+|...+|++++.|.+|++|+-
T Consensus 100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence 899999999999999999999999999999999998554 44444 59999999999998889999999999999987
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 152 ~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.....-..+....+|...|.+++|++.|..| ++++.|++|+||...
T Consensus 180 ~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl------------~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 180 EDDDDWECVQTLDGHENTVWSLAFDNIGSRL------------VSCSDDGTVSIWRLY 225 (312)
T ss_pred cCCCCeeEEEEecCccceEEEEEecCCCceE------------EEecCCcceEeeeec
Confidence 7432222333334899999999999965544 555779999999865
No 29
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=213.12 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=176.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|-.||++|++|+..|.|+|||.++...++.+.. |..+++.+.|+|+++.+|++|++|+.+++||+.+... ...+.+|+
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ht 153 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHT 153 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCc
Confidence 567999999999999999999766556667775 7889999999999998999999999999999998874 66889999
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 82 ~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tg-k~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
+.|.|.+|+| ++.++++|+.||+|++||++.. ..+..+.|..+|..+.+-|.|..|++++.+ .|+|||+-++.+.+.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLT 232 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehh
Confidence 9999999999 7789999999999999999987 677888999999999999999999988764 699999997755433
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccccCccc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV 223 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss~~~~ 223 (648)
... .|...|+|+++.. ++..|++++.|+.|++||+..+.-..+...+.|.
T Consensus 233 ~~~--~H~KtVTcL~l~s------------~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv 282 (487)
T KOG0310|consen 233 SMF--NHNKTVTCLRLAS------------DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV 282 (487)
T ss_pred hhh--cccceEEEEEeec------------CCceEeecccccceEEEEccceEEEEeeecccce
Confidence 333 5999999999976 4466788888999999999888887776665554
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=190.85 Aligned_cols=202 Identities=17% Similarity=0.280 Sum_probs=172.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
||-||+|.++++.|.+|++||...|.+++++.+ |+..|..++.+.|+. .|++|+.|+.|.+||+.+++. ++.+.+|.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv-~Rr~rgH~ 101 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKV-DRRFRGHL 101 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeecccccccc-ccccCCCCceEEEEEcccCee-eeeccccc
Confidence 788999999999999999999999999999997 788888889888877 799999999999999999985 78899999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--ceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg--k~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
+.|+.+.|+.+...+++|+.|..+++||.+.. ++++++. ....|.++..+ +..|++|+.||+++.||++.+.
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--- 176 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--- 176 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce---
Confidence 99999999999999999999999999999865 5677763 67788888885 4589999999999999999873
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEecc--------------------------------CCCCeEEEEeeCCCeEEcC
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETT--------------------------------CKAETALLGGAVGDSILMP 206 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~--------------------------------~~~~~~lvs~s~D~~IkvW 206 (648)
. ....-..+|++++|+++++....+.- ......+++|+.||.|++|
T Consensus 177 -l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 177 -L-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred -e-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 1 11234678999999999987665321 2335578999999999999
Q ss_pred CCCCCCC
Q 006360 207 DPLPSVT 213 (648)
Q Consensus 207 Dlr~~~~ 213 (648)
|+....-
T Consensus 255 dLvd~~~ 261 (307)
T KOG0316|consen 255 DLVDETQ 261 (307)
T ss_pred Eecccee
Confidence 9976544
No 31
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=218.23 Aligned_cols=171 Identities=19% Similarity=0.281 Sum_probs=141.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC--------------------------------C-----------------------
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS--------------------------------G----------------------- 26 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s--------------------------------g----------------------- 26 (648)
|++||+|||+||.||.|+||.+.. .
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 899999999999999999998754 0
Q ss_pred -----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEe
Q 006360 27 -----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG 100 (648)
Q Consensus 27 -----~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP-dg~~LaSgs 100 (648)
++++.+.+ |...|-++.|+.++ +|++++.|++|+||++....+ + ....|.+.|+||+|+| |.+||++|+
T Consensus 355 f~f~ekP~~ef~G-Ht~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C-L-~~F~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 355 FVFSEKPFCEFKG-HTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC-L-KVFSHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ccccccchhhhhc-cchhheecccccCC--eeEeccccccEEeecCCCcce-e-eEEecCCeeEEEEecccCCCcEeecc
Confidence 11233444 66677889999775 799999999999999987775 3 4568999999999999 999999999
Q ss_pred CCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC------CCCeeEEE
Q 006360 101 LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS------SEAVSSLC 174 (648)
Q Consensus 101 ~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h------~~~VtsLa 174 (648)
-|++|+||++...+.+.......-|++++|.|||++.++|+.+|.+++|+....+ .........| ...|+++.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCceeeeeE
Confidence 9999999999998888777788999999999999999999999999999998763 2222221111 23799999
Q ss_pred EccC
Q 006360 175 WQRA 178 (648)
Q Consensus 175 fspd 178 (648)
|.|.
T Consensus 509 ~~p~ 512 (712)
T KOG0283|consen 509 FFPG 512 (712)
T ss_pred ecCC
Confidence 9984
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=8.3e-21 Score=225.31 Aligned_cols=192 Identities=18% Similarity=0.293 Sum_probs=160.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC----c----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASG----A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg----~----~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~ 72 (648)
+|+++|++||+|+.|+.|+|||+... . ....+. +...+.+++|++....+|++++.||+|+|||+.++..
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~ 567 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL 567 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 58999999999999999999997531 1 122232 3456888999986555899999999999999987764
Q ss_pred eeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEe-CCCCEEEEEEcCCeEEEEE
Q 006360 73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFI-DDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafs-PdG~~Lasgs~DG~V~IWD 150 (648)
+..+.+|...|++++|+| ++.+|++|+.|+.|++||++++.++..+.+...|.++.|+ ++|.+|++|+.||.|++||
T Consensus 568 -~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 568 -VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred -EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 677889999999999997 8899999999999999999999888888777889999996 4799999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 151 l~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
++....+...+. +|...|.++.|. ++ .++++++.|+.|++||++.
T Consensus 647 ~~~~~~~~~~~~--~h~~~V~~v~f~-~~------------~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 647 LRNPKLPLCTMI--GHSKTVSYVRFV-DS------------STLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCCCccceEec--CCCCCEEEEEEe-CC------------CEEEEEECCCEEEEEeCCC
Confidence 998654445554 799999999996 33 3456667899999999875
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.87 E-value=4.7e-21 Score=201.81 Aligned_cols=189 Identities=23% Similarity=0.371 Sum_probs=160.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce-----------------------------------------eEEEeCCCCCcE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAK-----------------------------------------AAELKDPNEQVL 40 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~-----------------------------------------i~~l~~~~~~~V 40 (648)
|+.+|+||++++.||++.|||..++.. +.++.+ |...|
T Consensus 284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V 362 (524)
T KOG0273|consen 284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEV 362 (524)
T ss_pred EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCce
Confidence 788999999999999999999855432 223444 67788
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCC---------CEEEEEeCCCeEEEEeCC
Q 006360 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD---------KIIASVGLDKKLYTYDPG 111 (648)
Q Consensus 41 ~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg---------~~LaSgs~Dg~I~IWDl~ 111 (648)
.++.|+|.+. +|+++++|++++||....... .+.+..|...|+.+.|+|++ ..|++++.|++|++||+.
T Consensus 363 ~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 363 NALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EEEEECCCCc-eEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 9999999998 999999999999999876654 68899999999999998865 569999999999999999
Q ss_pred CCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 112 SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 112 tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
.+.++..+ .|..+|.+++|+|+|.++++|+.||.|+||+++.. +.++.+...+.|..|+|+-+|.+|..+
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~~~~Ifel~Wn~~G~kl~~~----- 511 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQGTGGIFELCWNAAGDKLGAC----- 511 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecCCCeEEEEEEcCCCCEEEEE-----
Confidence 99999888 89999999999999999999999999999999988 334444567789999999876665444
Q ss_pred CeEEEEeeCCCeEEcCCCC
Q 006360 191 ETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 191 ~~~lvs~s~D~~IkvWDlr 209 (648)
..|+.+++-|+|
T Consensus 512 -------~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 -------ASDGSVCVLDLR 523 (524)
T ss_pred -------ecCCCceEEEec
Confidence 448888888776
No 34
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=2.2e-20 Score=210.54 Aligned_cols=196 Identities=12% Similarity=0.166 Sum_probs=150.9
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCCCc--------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 006360 1 MYNCK-DEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (648)
Q Consensus 1 AFSpd-G~~Lasgs~DG~V~IwDl~sg~--------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~ 71 (648)
+|+|+ +++|++|+.||.|+|||+.++. .+..+.+ |...|.+++|+|++.++|++++.|++|+|||+.++.
T Consensus 81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159 (568)
T ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc
Confidence 48886 7899999999999999997542 2334554 678899999999998778899999999999998877
Q ss_pred ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEE-----EEEeCCCCEEEEEEcCC-
Q 006360 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS-----LAFIDDDWILTAGTSNG- 144 (648)
Q Consensus 72 ~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~s-----lafsPdG~~Lasgs~DG- 144 (648)
. +..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+ .|.+.+.+ ..|++++.+|++++.|+
T Consensus 160 ~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 160 R-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred E-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 4 33343 6678999999999999999999999999999999887766 46665433 33558889999888774
Q ss_pred ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 145 ---~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
.|+|||++....++..+....+.+.+..... + ..+.++++|..|+.|++|++...
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D-~-----------~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD-E-----------STGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEEeee-C-----------CCCCEEEEEECCCeEEEEEccCC
Confidence 7999999976566665543333333332222 2 25667778888999999998643
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.3e-21 Score=200.60 Aligned_cols=200 Identities=15% Similarity=0.181 Sum_probs=173.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~s-g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
+|+..|++||+++.|-.+.+||..+ .++++.+.+ |...|.+++|-|.|. +|++++.|.+|++||+.++.+ +..+.+
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~c-v~t~~~ 233 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYC-VKTFPG 233 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cccceeeEEEEecCC-eeeecccccceeEEeccccee-EEeccC
Confidence 4677899999999998899999876 455666655 788899999999997 899999999999999999986 789999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCC---------------CCEEEEEEcC
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD---------------DWILTAGTSN 143 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPd---------------G~~Lasgs~D 143 (648)
|...|..++.+.||.++++|+.|.+|++|-+.++++...+ .|+.+|.|++|.|. +.++++++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999999999999999999999999999999999887777 59999999999873 3589999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccc
Q 006360 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (648)
Q Consensus 144 G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~s 218 (648)
++|++||+.++. ++ +...+|.+.|.+++|+|.|+||++ +.+|+++++||++...+..+..
T Consensus 314 ktIk~wdv~tg~-cL--~tL~ghdnwVr~~af~p~Gkyi~S------------caDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 314 KTIKIWDVSTGM-CL--FTLVGHDNWVRGVAFSPGGKYILS------------CADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred ceEEEEeccCCe-EE--EEEecccceeeeeEEcCCCeEEEE------------EecCCcEEEEEeccceeeeccC
Confidence 999999999984 33 333489999999999996666554 5779999999999877766554
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=3.6e-20 Score=185.28 Aligned_cols=189 Identities=21% Similarity=0.388 Sum_probs=161.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+++++++++++.||.|++||+.+++....+.. |...+.+++|++++. ++++++.|+.|++||+...+. +..+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~-~~~~~~~ 176 (289)
T cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC-VATLTGH 176 (289)
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc-ceeEecC
Confidence 3678888888888899999999988888888874 667899999999976 778777799999999987664 5667788
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
...|.+++|+|+++.|++++.|+.|++||++.++.+..+ .|...+.+++|++++.++++++.||.|++||+... .+..
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~ 255 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQ 255 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEE
Confidence 889999999999999999999999999999998888877 68889999999999888888888999999999876 3344
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCC
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWD 207 (648)
.+. .|...|.+++|+++++++ ++++.|+.|++||
T Consensus 256 ~~~--~~~~~i~~~~~~~~~~~l------------~~~~~d~~i~iw~ 289 (289)
T cd00200 256 TLS--GHTNSVTSLAWSPDGKRL------------ASGSADGTIRIWD 289 (289)
T ss_pred Ecc--ccCCcEEEEEECCCCCEE------------EEecCCCeEEecC
Confidence 444 788899999999965555 4446699999996
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=4.7e-20 Score=184.40 Aligned_cols=195 Identities=20% Similarity=0.310 Sum_probs=164.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+|++++|++++.||.|++|++.+++....+.. |...+..+.|+++++ +|++++.|+.|++||+..... +..+..|
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~-~~~~~~~ 92 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC-VRTLTGH 92 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccc-eEEEecc
Confidence 4789999999999999999999988887777775 566777899999986 799999999999999987653 5667789
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
...|.+++|++++.++++++.|+.|++||+++++....+. |...|.+++|+|++.++++++.||.|++||++.. +...
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccce
Confidence 8899999999998899988889999999999888777664 7889999999999999998888999999999876 3344
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
.+. .|...|.+++|+++++.++++ +.|+.|++||++....
T Consensus 172 ~~~--~~~~~i~~~~~~~~~~~l~~~------------~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 172 TLT--GHTGEVNSVAFSPDGEKLLSS------------SSDGTIKLWDLSTGKC 211 (289)
T ss_pred eEe--cCccccceEEECCCcCEEEEe------------cCCCcEEEEECCCCce
Confidence 444 678899999999976555444 4489999999976433
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.87 E-value=2.1e-21 Score=205.25 Aligned_cols=190 Identities=17% Similarity=0.297 Sum_probs=162.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+.+|..+++++.|+.|++||+++|+++..+. .+..+.|+.|+|++.++|++|+.|+.|+.||+++++. ++....|
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~h 341 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRH 341 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhh
Confidence 589999999999999999999999999999887 5678899999999988999999999999999999984 6777889
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe--------------------------------e--------
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--------------------------------T-------- 120 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~--------------------------------~-------- 120 (648)
-+.|..+.|-+++.++++.+.|+.++||+.+.+-.+..+ .
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999999999999999999999999999998654322110 0
Q ss_pred ---------CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006360 121 ---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (648)
Q Consensus 121 ---------h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~ 191 (648)
..+.-..+.|+|||.+|++|+.||.|.+||.++. +.+..+. .|.+++..+.|+|. ..
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk--ah~~~ci~v~wHP~-----------e~ 487 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK--AHDQPCIGVDWHPV-----------EP 487 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc--cCCcceEEEEecCC-----------Cc
Confidence 1233456899999999999999999999999987 4455555 78999999999995 33
Q ss_pred eEEEEeeCCCeEEcCC
Q 006360 192 TALLGGAVGDSILMPD 207 (648)
Q Consensus 192 ~~lvs~s~D~~IkvWD 207 (648)
..+++++.||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 4566677899999997
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4e-21 Score=213.77 Aligned_cols=212 Identities=16% Similarity=0.208 Sum_probs=183.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+|...+|+++-..|.|.+||.+-+.++..|.. |.++|+.|+|+|... +|++|++|-.|+||+.++.++ +..+.+|
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc-lftL~GH 92 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC-LFTLLGH 92 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCC-eEEecCCccEEEEEeccccee-hhhhccc
Confidence 6999999999999999999999998999999986 888999999999998 999999999999999999886 6789999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC---
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ--- 156 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~--- 156 (648)
-+.|..+.|++.-.+|++++.|.+|+||+..+++++.++ +|...|.|..|+|....|++++-|-+|+|||+....+
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 999999999999999999999999999999999999887 6999999999999889999999999999999964210
Q ss_pred -----------------------ceEEEeecCCCCCeeEEEEccCCCeEEEeccC-------------------------
Q 006360 157 -----------------------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTC------------------------- 188 (648)
Q Consensus 157 -----------------------~~~~l~~~~h~~~VtsLafspdg~~Las~~~~------------------------- 188 (648)
.+......+|...|.-++|+|.-..+++++++
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn 252 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN 252 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC
Confidence 01111223899999999999988888886542
Q ss_pred -------CCCeEEEEeeCCCeEEcCCCCCCCCcc
Q 006360 189 -------KAETALLGGAVGDSILMPDPLPSVTTS 215 (648)
Q Consensus 189 -------~~~~~lvs~s~D~~IkvWDlr~~~~~s 215 (648)
....++++.+.|+.|+|||+....+..
T Consensus 253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cceEEecCccceeEecCCCccEEEEeccccccee
Confidence 123478888888999999887655543
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.86 E-value=3.5e-20 Score=197.43 Aligned_cols=182 Identities=20% Similarity=0.338 Sum_probs=149.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~--~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~------ 73 (648)
|+|||+++++++.||+|+|||-.+|+.+.++.. .|.+.|.++.|+||+. .|++++.|.+++|||+.+....
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecC
Confidence 899999999999999999999999999999972 4788999999999998 7999999999999999655422
Q ss_pred ------------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q 006360 74 ------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS 117 (648)
Q Consensus 74 ------------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~ 117 (648)
.+.+.+|...|+++..++++++|++|+.||.|.-||..++..-+
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 22567899999999999999999999999999999985542210
Q ss_pred E-------------------------------e------------------------------------------e----
Q 006360 118 C-------------------------------I------------------------------------------T---- 120 (648)
Q Consensus 118 ~-------------------------------~------------------------------------------~---- 120 (648)
. + .
T Consensus 357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK 436 (603)
T ss_pred cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence 0 0 0
Q ss_pred -----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 121 -----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 121 -----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
......+++++|++..+++|+.||.|+||.+..... ........|.++|++++|+||+.|||++
T Consensus 437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEe
Confidence 011234788999999999999999999999987542 2222223799999999999999988875
No 41
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=4.9e-20 Score=207.82 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=145.3
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCe
Q 006360 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPT 84 (648)
Q Consensus 12 gs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~-------~v~~l~~H~~~V 84 (648)
|+.++.|++|+......+..+.+ |...|.+++|+|+...+|++|+.|++|+|||+..... .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 45677899999877777777876 7788999999998544899999999999999975321 234678899999
Q ss_pred EEEEEccCCCE-EEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006360 85 AGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (648)
Q Consensus 85 ~slafsPdg~~-LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~ 163 (648)
.+++|+|++.. |++++.|++|+|||+++++.+..+.+...|.+++|+++|.+|++++.|+.|+|||+++.. .+..+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~- 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFH- 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEe-
Confidence 99999998765 578999999999999999877777778889999999999999999999999999999873 334444
Q ss_pred cCCCCCeeEEE-----EccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 164 CSSSEAVSSLC-----WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 164 ~~h~~~VtsLa-----fspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
+|.+.+.+.+ |++++.++++++.+. ..++.|++||++..
T Consensus 207 -gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--------~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 207 -IHDGGKNTKNIWIDGLGGDDNYILSTGFSK--------NNMREMKLWDLKNT 250 (568)
T ss_pred -cccCCceeEEEEeeeEcCCCCEEEEEEcCC--------CCccEEEEEECCCC
Confidence 6777654433 335444444332100 01358999999853
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.86 E-value=4.6e-22 Score=202.43 Aligned_cols=184 Identities=19% Similarity=0.310 Sum_probs=160.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCC
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS 81 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v~~l~~H~ 81 (648)
.+.+.|++|+.|.+|+|||+++|+++.++-. |.+.|-.+.|+.. ++++++.|.+|.+||+.... ...+.+.+|.
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence 4667899999999999999999999998875 6677777899732 89999999999999996554 2245678999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
+.|+.+.|+ .++|++++.|.+|++|++.++++++++ +|...|.|+.+ .|+++++|+.|.+|++||+..+ .++++
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRv 395 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRV 395 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHH
Confidence 999999995 779999999999999999999999888 69999999988 5789999999999999999988 55677
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
+. +|.+-|.++.|+ ...+++|+.||+|++||+....
T Consensus 396 Le--GHEeLvRciRFd--------------~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 396 LE--GHEELVRCIRFD--------------NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred Hh--chHHhhhheeec--------------CceeeeccccceEEEEeccccc
Confidence 77 899999999995 4578889999999999997543
No 43
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=8.1e-20 Score=204.40 Aligned_cols=197 Identities=16% Similarity=0.201 Sum_probs=152.0
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeE-------------EEeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAA-------------ELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTT 68 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~-------------~l~~~~~~~V~~Vafsp-dg~~lLaSgs~Dg~V~IWDl~ 68 (648)
++|+..+++++.+..+..|+...+..+. .+.+ |.+.|.+++|+| +++ +|++|+.|++|+|||+.
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIP 106 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecC
Confidence 4566666667666666777754332221 2443 778899999999 555 89999999999999996
Q ss_pred CCC------ceeEEeccCCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEE
Q 006360 69 GRS------PKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG 140 (648)
Q Consensus 69 t~~------~~v~~l~~H~~~V~slafsPdg-~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasg 140 (648)
... ..+..+.+|...|.+++|+|++ ++|++++.|++|+|||+.+++.+..+ .|...|.+++|+|+|.+|+++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg 186 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence 542 1356788999999999999964 79999999999999999999887776 488899999999999999999
Q ss_pred EcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 141 TSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 141 s~DG~V~IWDl~s~~~~~~~l~~~~h~~~-VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
+.|+.|+|||+++.. .+..+. +|.+. +..+.|.+++..+++.+. +.+.|+.|++||++...
T Consensus 187 s~Dg~IrIwD~rsg~-~v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~--------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 187 SKDKKLNIIDPRDGT-IVSSVE--AHASAKSQRCLWAKRKDLIITLGC--------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCEEEEEECCCCc-EEEEEe--cCCCCcceEEEEcCCCCeEEEEec--------CCCCCCeEEEEeCCCCC
Confidence 999999999999874 344444 56654 456788887666554421 12458999999998654
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=197.31 Aligned_cols=175 Identities=19% Similarity=0.282 Sum_probs=157.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~-------~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v 74 (648)
|+|||++|++|+.||.|.+||..+|+....++- -+...|.|++|+.|.. ++++|+.||.|+||.+.++.+..
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHH
Confidence 899999999999999999999999987665442 2467899999999998 99999999999999999999865
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 75 ~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
+.-+.|...|+|+.|+.|+..|++++.|.++++.-++.|++++.+ +|...|+...|.+||.+|++++.||+|+||+.++
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 555699999999999999999999999999999999999999888 6999999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccC
Q 006360 154 KPQPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 154 ~~~~~~~l~~~~h~~~VtsLafspd 178 (648)
. .++..++..+...+|.++-.-|.
T Consensus 380 t-eC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 380 T-ECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred h-hhhhhccCCCCcccceeEEEcCC
Confidence 7 45566666677888999888874
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=3.3e-21 Score=203.71 Aligned_cols=209 Identities=16% Similarity=0.174 Sum_probs=167.0
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 2 YNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 2 FSp-dG~~Lasgs~DG~V~IwDl~s-g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
|.| .+.+|++++.|+.|+||++.. +++++++.+ |...|.+++|+.+|. .|++++.|++|++||++++++.. .+ .
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~-~f-~ 297 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLS-RF-H 297 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCC-eeeeeecceeeeeeccccceEEE-EE-e
Confidence 345 678899999999999999876 889999987 888999999999998 79999999999999999998533 22 2
Q ss_pred CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc
Q 006360 80 HSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 80 H~~~V~slafsPdg-~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+ .|-+.|..+.|-++|..+++.+.|+.|+||+.+....
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~- 376 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP- 376 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-
Confidence 23468999999976 89999999999999999999998887 4889999999999999999999999999999987532
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEE-----------------------------------eccCCCCeEEEEeeCCCe
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFID-----------------------------------ETTCKAETALLGGAVGDS 202 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las-----------------------------------~~~~~~~~~lvs~s~D~~ 202 (648)
++.+. ..+.....+|..+|+++++++ +..+.++.+|++|+.||.
T Consensus 377 ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 377 IKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred chhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 22111 123344556666666665554 112346677788888999
Q ss_pred EEcCCCCCCCCccc
Q 006360 203 ILMPDPLPSVTTSS 216 (648)
Q Consensus 203 IkvWDlr~~~~~ss 216 (648)
+.+||-++-.-...
T Consensus 456 v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSK 469 (503)
T ss_pred EEEeechhhhhhhc
Confidence 99999886554443
No 46
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=1.2e-20 Score=200.26 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=156.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--- 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~----~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~--- 73 (648)
++.|.|-+|++|+.|..|++||+..+. ..+.+.-.....|+++.|++.+. .|++.+....++|+|-.+....
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeeeee
Confidence 467899999999999999999996432 33445555667899999999998 5555666688999998765421
Q ss_pred --------eEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCc-eeeEee------CCCCeEEEEEeCCCCEE
Q 006360 74 --------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCIT------YEAPFSSLAFIDDDWIL 137 (648)
Q Consensus 74 --------v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk-~v~~~~------h~~~I~slafsPdG~~L 137 (648)
+..-++|...++|.+|+| +...|++|+.||+++|||+...+ ...++. ..-+++.++|++||++|
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 224568999999999999 66789999999999999997654 333342 33468899999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcc
Q 006360 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (648)
Q Consensus 138 asgs~DG~V~IWDl~s~~~~~~~l~~~~h~~--~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~s 215 (648)
|+|+.||.|.+||.++...-........|.. .|+||.|+++|++|++- +.|+++++||++.+..+-
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR------------g~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR------------GFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc------------cCCCceeeeeccccccch
Confidence 9999999999999875422112222225665 89999999988777665 559999999999877544
No 47
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=3.1e-20 Score=195.37 Aligned_cols=196 Identities=22% Similarity=0.382 Sum_probs=159.2
Q ss_pred CCC-CEEEEEECCCcEEEEECCCCce----------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-
Q 006360 4 CKD-EHLASISLSGDLILHNLASGAK----------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS- 71 (648)
Q Consensus 4 pdG-~~Lasgs~DG~V~IwDl~sg~~----------i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~- 71 (648)
|+. ..|++.+..+.|+|||..+..- -..+.+|.. .-..++|++.....+++++.|+.|++||+....
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEeeccCCCcEEEEecccccc
Confidence 444 4667778889999999854221 125666444 456799999888889999999999999995432
Q ss_pred -----ceeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC--CceeeEe-eCCCCeEEEEEeC-CCCEEEEEE
Q 006360 72 -----PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS--RRPSSCI-TYEAPFSSLAFID-DDWILTAGT 141 (648)
Q Consensus 72 -----~~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~t--gk~v~~~-~h~~~I~slafsP-dG~~Lasgs 141 (648)
.....+.+|.+.|..++|++ +..+|++++.|+.+.|||+|+ .++.... .|.+.|.|++|+| ++.+||+|+
T Consensus 213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence 22567889999999999999 788999999999999999995 4444333 6999999999999 577888999
Q ss_pred cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 142 ~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
.|++|.+||+|+..+++..+. +|...|.+|.|+|+ ...++.+++.|+.+.|||+.....
T Consensus 293 ~D~tV~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh-----------~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNKPLHTFE--GHEDEVFQVEWSPH-----------NETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CCCcEEEeechhcccCceecc--CCCcceEEEEeCCC-----------CCceeEecccCCcEEEEecccccc
Confidence 999999999999888776666 89999999999996 566777778899999999965443
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.1e-20 Score=198.51 Aligned_cols=205 Identities=14% Similarity=0.166 Sum_probs=181.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|+|...+++++-.+|.|.|||.++...++.+.- ...+|+..+|-...+ .+++|++|..|+||+..+.+. ++.+..|.
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ek-V~~FeAH~ 97 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEK-VKTFEAHS 97 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccc-eEEEecCCceEEEEeccccee-eEEeeccc
Confidence 688899999999999999999999999998875 567788888887766 899999999999999999884 88999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg-k~v~~~-~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
+.|.|++.+|...++++++.|-+|++||.+.+ .+.+++ +|...|.+++|+| |.+.+++++-|++|+||.+... .+.
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 99999999999999999999999999999876 455666 6999999999999 6889999999999999999887 455
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccccCcc
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTA 222 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss~~~ 222 (648)
.++. +|...|.|++|.+ ..+..+++++++|..|||||.....+..++.-++.
T Consensus 177 fTl~--gHekGVN~Vdyy~----------~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 177 FTLE--GHEKGVNCVDYYT----------GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred eeee--ccccCcceEEecc----------CCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 6666 8999999999987 44778899999999999999998888776665444
No 49
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.4e-20 Score=207.85 Aligned_cols=203 Identities=18% Similarity=0.268 Sum_probs=164.7
Q ss_pred CCCEEEEEECCCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 5 KDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~s---g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
+.++||+++..|.|.+||+.. .+.+..|. .|...+++++|++...++|++|++||+|++||++.... ...+.+..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccc
Confidence 457899999999999999976 34444555 48889999999999999999999999999999988775 45667788
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCc-eeeE-eeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC-CCc
Q 006360 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP 157 (648)
Q Consensus 82 ~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk-~v~~-~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~-~~~ 157 (648)
..|.+|.|+| .+.+|+++.+.|.|.+||++... +... ..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+. ..+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 8999999999 89999999999999999999754 3333 379999999999999999999999999999999854 233
Q ss_pred eEEEeecCCCCCeeEEEEccCCCe-EEEeccCCCCeEEEEeeCCCeEEcCCCC-CCCCccccccCcc
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPV-FIDETTCKAETALLGGAVGDSILMPDPL-PSVTTSSVSLSTA 222 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~-Las~~~~~~~~~lvs~s~D~~IkvWDlr-~~~~~ss~ss~~~ 222 (648)
..++. ...+|..|.|-|...+ |++++ -..|-.|+|||++ ||.|-.++..+..
T Consensus 257 ~~tIn---Tiapv~rVkWRP~~~~hLAtcs----------mv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 257 KHTIN---TIAPVGRVKWRPARSYHLATCS----------MVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred eeEEe---ecceeeeeeeccCccchhhhhh----------ccccceEEEEeeccccccceeeeccCc
Confidence 34443 5688999999997654 33331 1238899999996 7777666554443
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.84 E-value=3.4e-19 Score=211.56 Aligned_cols=192 Identities=20% Similarity=0.344 Sum_probs=156.6
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSp-dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|++ ++.+|++++.||.|+|||+.+++.+..+.+ |...|.+++|++....+|++|+.|++|+|||+.++.. +..+..+
T Consensus 540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~ 617 (793)
T PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK 617 (793)
T ss_pred eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC
Confidence 555 468999999999999999999988888876 7788999999974334899999999999999988764 4455544
Q ss_pred CCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCc-eee-EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC--
Q 006360 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-- 155 (648)
Q Consensus 81 ~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk-~v~-~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~-- 155 (648)
..|.++.|++ ++.+|++|+.|+.|++||++..+ .+. ...|...|.++.|. ++.+|++++.|+.|+|||++...
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 6799999965 79999999999999999998765 333 34688999999997 77899999999999999998531
Q ss_pred ---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 156 ---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 156 ---~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
.++..+. +|...+.+++|++++.+| ++++.|+.|++|+....
T Consensus 696 ~~~~~l~~~~--gh~~~i~~v~~s~~~~~l------------asgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 696 INETPLHSFM--GHTNVKNFVGLSVSDGYI------------ATGSETNEVFVYHKAFP 740 (793)
T ss_pred cCCcceEEEc--CCCCCeeEEEEcCCCCEE------------EEEeCCCEEEEEECCCC
Confidence 3344444 789999999999976555 44567999999997543
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=3.2e-20 Score=204.21 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=159.9
Q ss_pred CEEEEEECCCcEEEEECCCCcee---EE-----EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 7 EHLASISLSGDLILHNLASGAKA---AE-----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i---~~-----l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
.+|++++.|++|++|++...+.. .. ....|...|++|+++|+.. +|+||+.|++.+||++.... ....+.
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~vLs 502 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLGVLS 502 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEEEee
Confidence 57899999999999998652211 11 1234788899999999998 99999999999999999655 478899
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
+|+..|+|+.|++..+.+++++.|++|+||.+.+..|++++. |...|..+.|-.+|..|++++.||.|+||++++. .+
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC 581 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-EC 581 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hh
Confidence 999999999999999999999999999999999999999995 9999999999999999999999999999999998 44
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCC
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWD 207 (648)
...+. .|.+.|++++.++... .+++++.|+.|.+|.
T Consensus 582 ~~tlD--~H~DrvWaL~~~~~~~------------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 582 EMTLD--AHNDRVWALSVSPLLD------------MFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhh--hccceeEEEeecCccc------------eeEecCCCeEEEEee
Confidence 55566 8999999999988543 556667799999994
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=175.63 Aligned_cols=150 Identities=17% Similarity=0.309 Sum_probs=132.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW 76 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg--~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v~~ 76 (648)
||+|.|++|++++.|.++.||.-..+ +++..+.+ |...|.|++|+.+|+ +||+|+.|+.|.||.+.... .....
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 79999999999999999999986544 57788887 778899999999998 89999999999999997433 33678
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---ceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg---k~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
+..|...|..+.|+|...+|++++.|.+|++|+-..+ .+++.+ +|...|.+++|++.|..|++++.|++|+||-..
T Consensus 146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 8999999999999999999999999999999987732 466666 588899999999999999999999999999855
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=6e-20 Score=202.07 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=166.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----ceeE
Q 006360 4 CKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----PKVS 75 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~----~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~----~~v~ 75 (648)
.+|.+|++|+.|.++++|.++++. ++....+ |...|.+|+++..+..+|++++.|+++++|++...+ +.+.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 356799999999999999874433 3333444 788899999999888899999999999999996521 1111
Q ss_pred ----EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEE
Q 006360 76 ----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 76 ----~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWD 150 (648)
....|...|+|++++|+.++|++|+.|++.+||++.......++ +|...|.|+.|++..+.+++++.|++|+||.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 34579999999999999999999999999999999988877777 6999999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 151 l~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
+.+. .+++.+. +|...|..+.|-.+|..| ++++.||-||+|++....+..++
T Consensus 534 is~f-SClkT~e--GH~~aVlra~F~~~~~ql------------iS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 534 ISTF-SCLKTFE--GHTSAVLRASFIRNGKQL------------ISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred eccc-eeeeeec--CccceeEeeeeeeCCcEE------------EeccCCCcEEEEeccchhhhhhh
Confidence 9998 4566666 899999999998865555 45566999999999988887665
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.83 E-value=4.1e-20 Score=189.12 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=148.9
Q ss_pred eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 006360 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (648)
Q Consensus 29 i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IW 108 (648)
.+.+.+ |.+.|+||++.|.++ .|++|+.|++|+|||+.+++. ...+.+|...|..+++++...|+++++.|+.|+.|
T Consensus 144 ~rVi~g-HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 144 YRVISG-HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhhh-ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 334444 788999999999876 899999999999999999985 46788999999999999999999999999999999
Q ss_pred eCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 109 DPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 109 Dl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
|+...+.++.+ +|-..|.|++.+|.-..|++|+.|.+++|||+++. ..+.++. +|..+|..+.+.|.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~--GH~~~V~~V~~~~~--------- 288 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLS--GHTNPVASVMCQPT--------- 288 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEec--CCCCcceeEEeecC---------
Confidence 99999887655 79999999999998889999999999999999998 4455555 99999999999883
Q ss_pred CCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 188 CKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 188 ~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
...+++++.|.+|++||++......++
T Consensus 289 ---dpqvit~S~D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 289 ---DPQVITGSHDSTVRLWDLRAGKTMITL 315 (460)
T ss_pred ---CCceEEecCCceEEEeeeccCceeEee
Confidence 345677788999999999976665543
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.83 E-value=1.3e-19 Score=186.90 Aligned_cols=192 Identities=17% Similarity=0.271 Sum_probs=166.3
Q ss_pred CEEEEEECCCcEEEEECCCCceeE----EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------------
Q 006360 7 EHLASISLSGDLILHNLASGAKAA----ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR------------ 70 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~----~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~------------ 70 (648)
..|++++.|.++++|.++.+...- ..+ +|...|.+|...+++. .+++|+.|.+|.||+....
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence 368999999999999998775432 222 4888899999999998 8999999999999993110
Q ss_pred ------------CceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEE
Q 006360 71 ------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT 138 (648)
Q Consensus 71 ------------~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~La 138 (648)
+..+..+.+|..+|.+|.|++ ...+++++.|.+|+.||+.++.++..+.....+.|+.++|..++|+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence 112557889999999999996 7789999999999999999999999988899999999999999999
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 139 sgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
+|+.|..|++||.+++...+......+|.+.|.++.|+|. +..+|++++.|+++++||+|...
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----------~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----------NEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------CceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999998766667777799999999999996 66678889999999999999655
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.7e-20 Score=191.51 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=153.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+||||+++|++++.|..+.+||+.+|.+...+...++..+.+++|.||+. -|++|+.|+.|..||+++.. .....+-
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv 352 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV 352 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence 59999999999999999999999999999888866678889999999998 69999999999999998876 2333333
Q ss_pred -CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe----------------------------------------
Q 006360 81 -SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------------------------------- 119 (648)
Q Consensus 81 -~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~---------------------------------------- 119 (648)
.-.|.+++..+||+++++.+.|..|++|+..+......+
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 246999999999999999999888888876543222111
Q ss_pred --eCCC--CeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 006360 120 --TYEA--PFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL 194 (648)
Q Consensus 120 --~h~~--~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~l 194 (648)
+|.. .|..-||-- +..++++|++|+.|+||+..++ +++.++. +|...|.+|+|+|. +..++
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~Ls--GHs~~vNcVswNP~-----------~p~m~ 498 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLS--GHSKTVNCVSWNPA-----------DPEMF 498 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeec--CCcceeeEEecCCC-----------CHHHh
Confidence 1111 122334433 4478899999999999999988 6777777 89999999999996 44456
Q ss_pred EEeeCCCeEEcCCCCCC
Q 006360 195 LGGAVGDSILMPDPLPS 211 (648)
Q Consensus 195 vs~s~D~~IkvWDlr~~ 211 (648)
+++++|++|+||.+.+.
T Consensus 499 ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSDN 515 (519)
T ss_pred hccCCCCeEEEecCCcc
Confidence 66788999999988654
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.1e-19 Score=196.32 Aligned_cols=204 Identities=19% Similarity=0.310 Sum_probs=163.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.|+++|++|++|..+|.|.|||..+.+.+..+.++|...|.+++|+ + ..+.+|+.|+.|.++|++.....+..+.+|
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~-~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S-SVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C-ceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 4889999999999999999999999999999998789999999998 3 279999999999999998877655568899
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-EeeCCCCeEEEEEeC-CCCEEEEEE--cCCeEEEEECCCCCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLAFID-DDWILTAGT--SNGRVVFYDIRGKPQ 156 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~-~~~h~~~I~slafsP-dG~~Lasgs--~DG~V~IWDl~s~~~ 156 (648)
...|..+.|++|+.++++|+.|+.|.|||.....+.. ...|.+.|..++|+| ...+||+|+ .|+.|++||..++..
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 9999999999999999999999999999997666554 447999999999999 467888865 599999999997632
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEecc--------------------------------CCCCeEEEEeeCCCeEE
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETT--------------------------------CKAETALLGGAVGDSIL 204 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~~Las~~~--------------------------------~~~~~~lvs~s~D~~Ik 204 (648)
+........|.+|.|++..+-|++... ..++..+++++.|.+++
T Consensus 381 ----i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 381 ----IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred ----ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence 222234556666666665544443211 12344556666688888
Q ss_pred cCCCCCC
Q 006360 205 MPDPLPS 211 (648)
Q Consensus 205 vWDlr~~ 211 (648)
+|++-..
T Consensus 457 fw~~f~~ 463 (484)
T KOG0305|consen 457 FWNLFDE 463 (484)
T ss_pred eccccCC
Confidence 8877654
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.1e-19 Score=186.67 Aligned_cols=211 Identities=13% Similarity=0.174 Sum_probs=168.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~---~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
||++|++||+++.|.+..||++.... ...++.+ |...|.-+.|+||.+ ++++|+.|..+.+||+.++......-.
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhccc
Confidence 89999999999999999999875433 3566776 556677799999999 788888889999999999986544445
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
+|...+.+++|.||+..+++|+.|+.|..||+.....-.--+ ....|.+++..+||+++++.+.|..|++|+......
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d- 388 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD- 388 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-
Confidence 566889999999999999999999999999987544222111 345699999999999999999999999999987532
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEE---------------------------------eccCCCCeEEEEeeCCCeEE
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFID---------------------------------ETTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las---------------------------------~~~~~~~~~lvs~s~D~~Ik 204 (648)
...+ ....+|++++.+.+++++.. |....+..++++|+.|+.|+
T Consensus 389 r~li---se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 389 RGLI---SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred hccc---cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 1122 35678999999988887665 33445678999999999999
Q ss_pred cCCCCCCCCccccc
Q 006360 205 MPDPLPSVTTSSVS 218 (648)
Q Consensus 205 vWDlr~~~~~ss~s 218 (648)
||+...-.....++
T Consensus 466 IWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 466 IWHRISGKLLAVLS 479 (519)
T ss_pred EEEccCCceeEeec
Confidence 99998766665543
No 59
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.82 E-value=5.2e-19 Score=188.55 Aligned_cols=194 Identities=15% Similarity=0.243 Sum_probs=156.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce----------------------------------------------eEEEeCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAK----------------------------------------------AAELKDP 35 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~----------------------------------------------i~~l~~~ 35 (648)
|+|.|-|+|+|...|+|+|||....+. +.++.+
T Consensus 67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G- 145 (603)
T KOG0318|consen 67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG- 145 (603)
T ss_pred eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeec-
Confidence 789999999999999999999743111 112222
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 006360 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 36 ~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~ 115 (648)
|...|++++|-|.....+++|++|++|.+|+-.--+- ...+..|..-|+|+.|+|||.++++++.||+|.+||-.+++.
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF-k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF-KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee-eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 5667778888887777899999999999998655442 356788999999999999999999999999999999999998
Q ss_pred eeEee----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEE------------------------------
Q 006360 116 SSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL------------------------------ 161 (648)
Q Consensus 116 v~~~~----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l------------------------------ 161 (648)
+..+. |.+.|.++.|+||+..|++++.|.+++|||+.+.+ +++.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 88874 99999999999999999999999999999998642 11111
Q ss_pred -----------eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 162 -----------RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 162 -----------~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
...+|...|+++..++++ .++++++.||.|.-||...
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~------------~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDG------------KTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCC------------CEEEeeccCceEEEEecCC
Confidence 112677888888887754 4556668899999999864
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=2.5e-19 Score=188.58 Aligned_cols=198 Identities=20% Similarity=0.300 Sum_probs=158.3
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCce------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCc
Q 006360 1 MYNCKDE-HLASISLSGDLILHNLASGAK------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSP 72 (648)
Q Consensus 1 AFSpdG~-~Lasgs~DG~V~IwDl~sg~~------i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t-~~~ 72 (648)
+||+... +|++++.|+.|.+||+..... ...+...|...|..|+|++....+|+++++|+.+.|||++. ...
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 4666553 788999999999999964332 12233348899999999998888999999999999999985 223
Q ss_pred eeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEeCC-CCEEEEEEcCCeEEE
Q 006360 73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVF 148 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk-~v~~~-~h~~~I~slafsPd-G~~Lasgs~DG~V~I 148 (648)
..+...+|.+.|+|++|+| ++.+||+|+.|++|++||+|.-+ ++..+ .|...|.+|.|+|+ ..+|++++.|+.|.|
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 3567889999999999999 88999999999999999999754 34444 69999999999996 567888999999999
Q ss_pred EECCCCC-----------CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 149 YDIRGKP-----------QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 149 WDl~s~~-----------~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
||+..-. .+...+..-+|...|..+.|+|+.+++ +.+.+.|+.+.||+..
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQMA 404 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE-----------EEEecCCceEEEeecc
Confidence 9997421 112223334899999999999986664 4445679999999875
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=5.9e-20 Score=185.02 Aligned_cols=201 Identities=12% Similarity=0.179 Sum_probs=161.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC------------------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASG------------------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg------------------~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V 62 (648)
+|+|||.++++|+.|..|+|+|++.. -.++++.. |-+.|+++.|+|... +|++++.|++|
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~-ILiS~srD~tv 196 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRET-ILISGSRDNTV 196 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhh-eEEeccCCCeE
Confidence 69999999999999999999998611 14556665 778899999999987 99999999999
Q ss_pred EEEECCCCCce-eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCCCeEEEEEeCCCCEE
Q 006360 63 HLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWIL 137 (648)
Q Consensus 63 ~IWDl~t~~~~-v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~----~h~~~I~slafsPdG~~L 137 (648)
++||+.....+ ..........|.++.|+|.|.+|+.|....++++||+.+-++...- .|.+.|+++.+++.|++.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY 276 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY 276 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence 99999544311 1222334568999999999999999999999999999998876543 488999999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 138 asgs~DG~V~IWDl~s~~~~~~~l~~~~h~-~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
++++.||.|+|||--... ++..+.. .|. ..|.+..|..+|+|+.+. +.|..+++|.+....+...
T Consensus 277 vTaSkDG~IklwDGVS~r-Cv~t~~~-AH~gsevcSa~Ftkn~kyiLsS------------G~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 277 VTASKDGAIKLWDGVSNR-CVRTIGN-AHGGSEVCSAVFTKNGKYILSS------------GKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEeccCCcEEeeccccHH-HHHHHHh-hcCCceeeeEEEccCCeEEeec------------CCcceeeeeeecCCceEEE
Confidence 999999999999987763 3343332 344 568899999977666554 5699999999976655544
Q ss_pred c
Q 006360 217 V 217 (648)
Q Consensus 217 ~ 217 (648)
+
T Consensus 343 Y 343 (430)
T KOG0640|consen 343 Y 343 (430)
T ss_pred E
Confidence 4
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3e-19 Score=176.14 Aligned_cols=187 Identities=17% Similarity=0.268 Sum_probs=159.7
Q ss_pred CCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc-
Q 006360 14 LSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS- 91 (648)
Q Consensus 14 ~DG~V~IwDl~sg~~i~~l~~~-~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP- 91 (648)
..|.++|.++...+-+.++... -.+.+..|+|+++..+++++++.||.++|||.......++.+++|+..|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 3688999999766656555432 36778999999998889999999999999998776667899999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006360 92 DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (648)
Q Consensus 92 dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~ 169 (648)
+...+++++.|++|++||...++.++++ +|..-|...+|+| .++.+++++.|+.++|||++...+.+. +. .|...
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~--ah~~E 192 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE--AHNSE 192 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE--eccce
Confidence 7888899999999999999988888887 6888999999999 588999999999999999998755443 33 68899
Q ss_pred eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 170 VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
|.++.|+.- +..++++++.|+.|+.||+|....+
T Consensus 193 il~cdw~ky-----------~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 193 ILCCDWSKY-----------NHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred eEeeccccc-----------CCcEEEecCCCceEEEEehhhcccc
Confidence 999999863 6677888889999999999976643
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-18 Score=175.09 Aligned_cols=182 Identities=15% Similarity=0.221 Sum_probs=152.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs-~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
.|+.+|.+|++++.|..|+|||..+++.++++.. +...|..++|......++.+.. .|.+|+..++.+++. ++.+.+
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky-lRYF~G 98 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY-LRYFPG 98 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEeecCce-EEEcCC
Confidence 3889999999999999999999999999999985 5566778899877764444322 488999999988875 889999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC-CCce
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPL 158 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~-~~~~ 158 (648)
|...|+.|+.+|-+..+++++.|++|++||++..++...+.... -..++|+|+|-++|++.....|+|||+|.. +.|.
T Consensus 99 H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 99 HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 99999999999977999999999999999999888877765333 345789999999999998889999999975 5566
Q ss_pred EEEeec-CCCCCeeEEEEccCCCeEEEe
Q 006360 159 TVLRAC-SSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 159 ~~l~~~-~h~~~VtsLafspdg~~Las~ 185 (648)
..+... +-....+.|.|+|||++|+.+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 666643 446778999999999998763
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=4.1e-19 Score=185.67 Aligned_cols=196 Identities=18% Similarity=0.264 Sum_probs=169.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
...+++|+.|..+.++|...++.+..+++ |...|+.+.|+++.. .+++++.|..|+||....... ......|..+|+
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE-PTSSRPHEEPVT 307 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchh-heeecCCcceEEeeccccccC-ccccccccccce
Confidence 46789999999999999999999999997 777888999999988 789999999999999976654 467889999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~---~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~ 162 (648)
.+..+|.|.||+++++|++..+.|++++.++....++ -.+++.+|+|||.++.+|..||.|+|||+.... .+-+
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~ 384 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAK 384 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---cccc
Confidence 9999999999999999999999999999988777654 348999999999999999999999999999874 3445
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 163 ~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
+.+|.++|..|.|+.+|-||++ ++.|+.|++||+|......++..
T Consensus 385 Fpght~~vk~i~FsENGY~Lat------------~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENGYWLAT------------AADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred CCCCCCceeEEEeccCceEEEE------------EecCCeEEEEEehhhcccceeec
Confidence 5589999999999986655544 46699999999998776555444
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=3e-19 Score=176.68 Aligned_cols=201 Identities=18% Similarity=0.290 Sum_probs=164.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~-~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~------ 73 (648)
+|+.+|..|++|+.|+++.+|++...+....+.. .|.+.|-.++|.|....+|++++.|++|++||++..++.
T Consensus 27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred EEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc
Confidence 6899999999999999999999987755544331 355566778999887779999999999999999765543
Q ss_pred ---------------------------------------------------------------------------eEEec
Q 006360 74 ---------------------------------------------------------------------------VSWLK 78 (648)
Q Consensus 74 ---------------------------------------------------------------------------v~~l~ 78 (648)
+..++
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc
Confidence 11456
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
.|.....||.|+|+|++|++|+.|-.+.+||+..--|++.+ .+..+|..+.|+.||++||++++|..|-|=++.++.+.
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 78888899999999999999999999999999998888888 58999999999999999999999999999999998654
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
..+ .+.++...|+|+|...+||......++ -..-..+.||+|-+
T Consensus 267 ~eI----~~~~~t~tVAWHPk~~LLAyA~ddk~~---d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 267 WEI----PCEGPTFTVAWHPKRPLLAYACDDKDG---DSNREAGTVKIFGL 310 (313)
T ss_pred EEe----eccCCceeEEecCCCceeeEEecCCCC---ccccccceeEEecC
Confidence 333 478999999999999999887555444 11222467777754
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=1.4e-19 Score=192.29 Aligned_cols=212 Identities=19% Similarity=0.325 Sum_probs=166.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEe------------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK------------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~------------~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~ 68 (648)
.|++.|+.|++.+....++|+|- .|..+.++. ..|-..++|.+|+|+.+..|++++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 48899998888888889999995 554443322 13667889999999998899999999999999997
Q ss_pred CCCceeEEec-----cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeEe--eCCC--CeEEEEEeCCCCEE
Q 006360 69 GRSPKVSWLK-----QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI--TYEA--PFSSLAFIDDDWIL 137 (648)
Q Consensus 69 t~~~~v~~l~-----~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk--~v~~~--~h~~--~I~slafsPdG~~L 137 (648)
..+.....++ +..-.++.++|++|+++||.|+.||.|.+||.+... +...+ .|.. .|+||.|++||++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 6553333333 234568999999999999999999999999985432 33333 3655 89999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 138 asgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
++-+.|+.++|||++..++++.+........+-+.++|+|+.++|+++.. +.-+...+.+++||...+.....+
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS------~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS------APNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc------ccCCCCCceEEEEeccceeeEEEe
Confidence 99999999999999999888888876667778899999999888888733 122233568899998887776554
Q ss_pred cc
Q 006360 218 SL 219 (648)
Q Consensus 218 ss 219 (648)
..
T Consensus 454 ~i 455 (641)
T KOG0772|consen 454 DI 455 (641)
T ss_pred cC
Confidence 44
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=178.37 Aligned_cols=189 Identities=17% Similarity=0.297 Sum_probs=156.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+||.||.+||+|+.+|.|+||+..++.....+.. ....+.-++|+|.+. +|++|+.||.|.+|.+.... ..+.+.+|
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~Gh 189 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSGH 189 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecCC
Confidence 4899999999999999999999999998888864 334455589999887 89999999999999998854 36788999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-----------------------------------------
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----------------------------------------- 119 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~----------------------------------------- 119 (648)
..++++=+|.|+|+.++++..||+|++||..+++++..+
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 999999999999999999999999999999776543211
Q ss_pred -------------------------------------------------------eCCCCeEEEEEeCCCCEEEEEEcCC
Q 006360 120 -------------------------------------------------------TYEAPFSSLAFIDDDWILTAGTSNG 144 (648)
Q Consensus 120 -------------------------------------------------------~h~~~I~slafsPdG~~Lasgs~DG 144 (648)
.|...|..+.|-+ ..+|++++.||
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 1445567777877 57889999999
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 145 ~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
.|++||.|++ ++...+. +|...|.+++++|+.+++ ++.+.|++.+||++
T Consensus 349 ~v~~wDaRtG-~l~~~y~--GH~~~Il~f~ls~~~~~v------------vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 349 KVRQWDARTG-QLKFTYT--GHQMGILDFALSPQKRLV------------VTVSDDNTALVFEV 397 (399)
T ss_pred eEEeeecccc-ceEEEEe--cCchheeEEEEcCCCcEE------------EEecCCCeEEEEec
Confidence 9999999998 4455555 999999999999965554 55567888888875
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.81 E-value=7.5e-20 Score=186.45 Aligned_cols=185 Identities=16% Similarity=0.261 Sum_probs=157.5
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~ 83 (648)
.|+..+++|..|++|+|||.++..+...+.+ |.+.|-|+.|. .+ +|++|+.|.+|+|||++++++ +..+..|.+.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd--~r-viisGSSDsTvrvWDv~tge~-l~tlihHcea 279 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYD--ER-VIVSGSSDSTVRVWDVNTGEP-LNTLIHHCEA 279 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeecc--ce-EEEecCCCceEEEEeccCCch-hhHHhhhcce
Confidence 4677899999999999999999899988887 77778788774 44 899999999999999999986 7888999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee----EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS----CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~----~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
|..+.|+ ..++++++.|..|.+||+.....+. ..+|...|+.+.|+ .++|++++.|.+|++|++.+. ..++
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~-efvR 354 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVR 354 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce-eeeh
Confidence 9999997 6799999999999999998765332 23799999999995 459999999999999999987 4455
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
++. +|...|.|+.+ .+.++++|+.|.+|++||+.--++.
T Consensus 355 tl~--gHkRGIAClQY--------------r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 355 TLN--GHKRGIACLQY--------------RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred hhh--cccccceehhc--------------cCeEEEecCCCceEEEEeccccHHH
Confidence 555 88888888876 5578888899999999999765554
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.81 E-value=1.2e-18 Score=179.72 Aligned_cols=188 Identities=20% Similarity=0.311 Sum_probs=154.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCC-------------------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEe
Q 006360 3 NCKDEHLASISLSGDLILHNLAS-------------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG 57 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~s-------------------------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs 57 (648)
+++|.++++|+.|..|.||+... +..+..+.+ |.+.|.+|.|.+.+ .+++++
T Consensus 202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w~d~~--v~yS~S 278 (423)
T KOG0313|consen 202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVWSDAT--VIYSVS 278 (423)
T ss_pred cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEEcCCC--ceEeec
Confidence 57899999999999999999321 113334554 88899999999844 699999
Q ss_pred CCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--ee--eEeeCCCCeEEEEEeCC
Q 006360 58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PS--SCITYEAPFSSLAFIDD 133 (648)
Q Consensus 58 ~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk--~v--~~~~h~~~I~slafsPd 133 (648)
+|++|+.||+.++... ..+. ....++|++++|..++|++|+.|..|++||.+++. .+ ..++|.+.|..+.|+|.
T Consensus 279 wDHTIk~WDletg~~~-~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLK-STLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred ccceEEEEEeecccce-eeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence 9999999999988753 3333 34568999999999999999999999999999764 22 34479999999999995
Q ss_pred -CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 134 -DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 134 -G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
..+|++|+.|+++++||+|..+.++..+. +|...|.++.|.. +.++++|+.|++|+++.-.+
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~~-------------~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWNE-------------GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEeccC-------------CceEEeccCcceEEEecccc
Confidence 56788999999999999999877777777 8999999999974 45778888899999986554
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=176.02 Aligned_cols=194 Identities=18% Similarity=0.209 Sum_probs=154.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~-~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
..++.++|+|+.|-+|+|||+.....+..+.. |.+.|+++.|.++-. .-|++|++||.|.+|+..... .+..++.|.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~ 127 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHK 127 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccc
Confidence 45789999999999999999998888888875 788999999987652 248899999999999999986 488999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---------------------------------------
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE--------------------------------------- 122 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~--------------------------------------- 122 (648)
+.|+.++++|.+++-++.+.|+.+++||+-.|+.-.+....
T Consensus 128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~ 207 (362)
T KOG0294|consen 128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN 207 (362)
T ss_pred cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc
Confidence 99999999999999999999999999999776543322211
Q ss_pred -CCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006360 123 -APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (648)
Q Consensus 123 -~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~ 201 (648)
..+.|+.|- ++.+|++|..|+.|.+||.... .+...+. +|...|.++.+.. ...+.++++.+.||
T Consensus 208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~--AH~~RVK~i~~~~----------~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFL--AHENRVKDIASYT----------NPEHEYLVTASSDG 273 (362)
T ss_pred cccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeee--cchhheeeeEEEe----------cCCceEEEEeccCc
Confidence 123344443 4567778888888999988874 3444444 7899999988543 23567888889999
Q ss_pred eEEcCCCCCCC
Q 006360 202 SILMPDPLPSV 212 (648)
Q Consensus 202 ~IkvWDlr~~~ 212 (648)
.|+|||++...
T Consensus 274 ~I~vWd~~~~~ 284 (362)
T KOG0294|consen 274 FIKVWDIDMET 284 (362)
T ss_pred eEEEEEccccc
Confidence 99999998763
No 71
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=183.34 Aligned_cols=201 Identities=17% Similarity=0.243 Sum_probs=168.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-------C-CCcee
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-------G-RSPKV 74 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~-------t-~~~~v 74 (648)
+|+|.+|+.|+..|.|++|.+.+|.++..+.. |-..|+|+.|+.|+. +|++|+.||.|.+|++. + ....+
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccce
Confidence 67899998888999999999999999988865 888999999999998 89999999999999872 1 12336
Q ss_pred EEeccCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 75 SWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 75 ~~l~~H~~~V~slafsP--dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
+.+..|.-.|+++...+ -..+|++++.|.++++||+..+..+..+.....+.+++++|-+..+++|+.+|.|.+.++.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 78899999999999876 3568999999999999999999999888899999999999999999999999999998886
Q ss_pred CCC-------------CceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 153 GKP-------------QPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 153 s~~-------------~~~~~l~~~~h~~--~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
+.. ...+.....+|.+ .|+|++++- ++.++++|+.|++|+|||+.......++
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------DGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEec------------CccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 532 0112222237777 999999887 5566677788999999999776665543
No 72
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.81 E-value=7.7e-19 Score=176.73 Aligned_cols=194 Identities=15% Similarity=0.251 Sum_probs=162.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|++|++.|++++.|.+|+.||+++|++++.+++ |...|+.++-+.-|..++.++++|++++|||++.+.. ++ ....+
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~-t~~~k 174 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IK-TFENK 174 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hh-ccccc
Confidence 788999999999999999999999999999997 7888998887777777899999999999999998774 33 33445
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC---CCc
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQP 157 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~---~~~ 157 (648)
..++++.|..++..+++|+-|+.|++||++.+....++ +|...|+.+..+++|.++.+-+.|.+|++||++-. ..+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 67999999999999999999999999999999888777 69999999999999999999999999999999853 234
Q ss_pred eEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 158 LTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 158 ~~~l~~~~h~~~--VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
+.++....|.-. ....+|+|++.++. .++.|+.+++||...
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~------------ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKIT------------AGSADRFVYVWDTTS 297 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccc------------cccccceEEEeeccc
Confidence 566665444433 44567888655554 446699999998754
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-18 Score=170.53 Aligned_cols=204 Identities=18% Similarity=0.223 Sum_probs=171.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
||.+|++|++++.|..+.||-..+|+.+.++.+ |.+.|.|++..-+.+ .+++|+.|.++++||+.++++.. .-...
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~la--~~k~~ 93 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQLA--TWKTN 93 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEEE--EeecC
Confidence 799999999999999999999889999999998 778899999998887 79999999999999999998532 33456
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CeEEEEeCCC-------CceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEE
Q 006360 82 APTAGISFSSDDKIIASVGLD-----KKLYTYDPGS-------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~D-----g~I~IWDl~t-------gk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~I 148 (648)
..|..+.|+.+|++++.+..+ +.|.++|++. ..++..+ .+...++.+.|.|-+.+|++|++||.|.+
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence 689999999999998877654 4799999983 3444443 57789999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccccCccc
Q 006360 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV 223 (648)
Q Consensus 149 WDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss~~~~ 223 (648)
||++++.+.+.... .|...|+.|.|++ +..++++++.|.+-++||.+......++.+-.|.
T Consensus 174 ~da~~g~~~v~s~~--~h~~~Ind~q~s~------------d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 174 YDARTGKELVDSDE--EHSSKINDLQFSR------------DRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred EEcccCceeeechh--hhccccccccccC------------CcceEEecccCccceeeeccceeeEEEeeecccc
Confidence 99999866555545 6888999999999 5566777788999999999987776666665544
No 74
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=8.7e-19 Score=180.68 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=154.6
Q ss_pred CCEEEEEECCCcEEEEECCC----------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006360 6 DEHLASISLSGDLILHNLAS----------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~s----------------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t 69 (648)
..+.++-+..|.|+|||+.. .+.+.++.+ |...-..++|+|-....|++|..-+.|++|...+
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccCccccceEeeeecc
Confidence 34566778889999999843 234556666 5566678999994433588888889999999977
Q ss_pred CCce--eEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC---ceeeEeeCCCCeEEEEEeCCCCEEEEEEcC
Q 006360 70 RSPK--VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (648)
Q Consensus 70 ~~~~--v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tg---k~v~~~~h~~~I~slafsPdG~~Lasgs~D 143 (648)
+.-. ..-+.+|+..|-.++|+| ....|++|+.||.|+|||+|.+ .++.+..|.+.|+.|.|+.+-.+|++|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 6532 234567999999999999 7789999999999999999998 355556799999999999988899999999
Q ss_pred CeEEEEECCCC--CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 144 GRVVFYDIRGK--PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 144 G~V~IWDl~s~--~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
|+++|||+|.. .+++..++ .|..+|++|.|+|. +...++.++.|..|.+||+....
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~-----------e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPH-----------EDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccc-----------cCceEEeccCCCcEEEEEeeccC
Confidence 99999999963 35667777 79999999999995 44455566669999999996544
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=4.7e-19 Score=174.27 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=160.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~-~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
||+.|.++|++|+.+..++|||++..+ ...++.+ |...|+.+.|....+ .|++..+|++|++||.+++.. ++.+ .
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~-v~sL-~ 182 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTE-VQSL-E 182 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcE-EEEE-e
Confidence 689999999999999999999997654 3455665 777888899998777 677779999999999999874 3433 3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
....|+++.++++|.+|.++ ..+.|++||..+...++.+.....|.+..++|+..++++|++|+.++.||..++.....
T Consensus 183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 45579999999999876655 45679999999999998888889999999999999999999999999999999854322
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
. ..+|-++|.||.|+|+|... .+|+.||+|++|...+-.+.
T Consensus 262 ~--nkgh~gpVhcVrFSPdGE~y------------AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 262 Y--NKGHFGPVHCVRFSPDGELY------------ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred c--ccCCCCceEEEEECCCCcee------------eccCCCceEEEEEecCCCch
Confidence 2 23899999999999965554 55577999999988765554
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=6.7e-19 Score=177.74 Aligned_cols=195 Identities=14% Similarity=0.235 Sum_probs=167.1
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC------CC------------
Q 006360 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT------TG------------ 69 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl------~t------------ 69 (648)
.+.+++.|.+.+||.+++|+|+.++.+ |.+.|++|+|++.+. ++++++.|++.+||.. ..
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ceeecccccceeEEeeccccceeeecc-cccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 567889999999999999999999997 778899999999887 8999999999999962 10
Q ss_pred ---------------------CCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEE
Q 006360 70 ---------------------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS 127 (648)
Q Consensus 70 ---------------------~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~s 127 (648)
-...+..+.+|.+.|.+..|...++.+++++.|.+..+||++++..+..+ +|...++-
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH 319 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence 00114467889999999999999999999999999999999999999887 69999999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCC
Q 006360 128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (648)
Q Consensus 128 lafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWD 207 (648)
++-+|..+++++.+.|-+.++||.+..-+.+.++. +|...|+++.|..+ ..+++++.|++|++||
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtdtVTS~vF~~d-------------d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTDTVTSVVFNTD-------------DRVVSGSDDRTVKVWD 384 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhhcceeeeec--ccccceeEEEEecC-------------CceeecCCCceEEEee
Confidence 99999999999999999999999997666666666 99999999999864 2457888899999999
Q ss_pred CCCCC-Ccccccc
Q 006360 208 PLPSV-TTSSVSL 219 (648)
Q Consensus 208 lr~~~-~~ss~ss 219 (648)
++... +..++-+
T Consensus 385 LrNMRsplATIRt 397 (481)
T KOG0300|consen 385 LRNMRSPLATIRT 397 (481)
T ss_pred eccccCcceeeec
Confidence 98544 4444444
No 77
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.8e-19 Score=194.57 Aligned_cols=194 Identities=19% Similarity=0.302 Sum_probs=165.9
Q ss_pred ccCC-CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 2 YNCK-DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSpd-G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|++- -.+|++|+.||+|++||++..+-..++.+ ..+.|++|+|+|...+.|+++.+.|++.+||++........+..|
T Consensus 141 fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 141 FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred eccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 4443 35889999999999999998888888876 788999999999888899999999999999998776667788999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeEeeCCCCeEEEEEeCCCC-EEEEEE--cCCeEEEEECCCCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCITYEAPFSSLAFIDDDW-ILTAGT--SNGRVVFYDIRGKP 155 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk--~v~~~~h~~~I~slafsPdG~-~Lasgs--~DG~V~IWDl~s~~ 155 (648)
.+.|.|+.|+|++.+||+||.|++|+|||+.+.+ ...++....+|.+|+|-|+.. +|++++ .|-.|+|||++-..
T Consensus 220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 9999999999999999999999999999998765 456667889999999999754 455554 47789999999987
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
-|..++. .|...++.++|.. .+...+++++.|+.|..-..+
T Consensus 300 IP~~t~~--eH~~~vt~i~W~~-----------~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 300 IPYATFL--EHTDSVTGIAWDS-----------GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccceeee--ccCccccceeccC-----------CCceeeEeecCccHHHHhhhh
Confidence 7888777 8999999999975 367788888989988776554
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.79 E-value=2e-18 Score=194.02 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=164.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
+++|++|+.|.+++|||..+|++...+.+ |...|.++...+. ++++|+.|.+|++|+++++.. ++.+.+|.+.|+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVN 335 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEccCc---eEeeccCCceEEEEeccCcce-EEEeccccccEE
Confidence 67899999999999999999999999997 7788888766543 788899999999999998875 677888999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeec
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC 164 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~ 164 (648)
++..+ +.++++|+.|++|++||+.+++++..+ +|...|.++.+... +++++|+.|+.|++||+++..+++..+.
T Consensus 336 ~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-- 410 (537)
T KOG0274|consen 336 CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-- 410 (537)
T ss_pred EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc--
Confidence 99997 899999999999999999999999888 69999999988664 8999999999999999998854555555
Q ss_pred CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 165 SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 165 ~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
+|...+.++.+ ...++++++.|++|++||.........+..
T Consensus 411 ~h~~~v~~l~~--------------~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 411 GHTSLVSSLLL--------------RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred CCccccccccc--------------ccceeEeccccccEEEeecccCceeeeecc
Confidence 78888866665 345788889999999999998888776544
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=6e-19 Score=181.04 Aligned_cols=199 Identities=19% Similarity=0.318 Sum_probs=163.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------------
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------------- 72 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~-------------- 72 (648)
..+++|+.||.|+|||+.+..++..++. |.+.|+.+++.. + .++++++|++|+.|.+...-.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc-c--ceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence 4578999999999999999999999997 788999999986 2 589999999999997432100
Q ss_pred -----------------------eeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEE
Q 006360 73 -----------------------KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSL 128 (648)
Q Consensus 73 -----------------------~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~sl 128 (648)
.+..+.-..+.|.++.|+| ...+|++|+.|+.|.+||++++.++..+-....-+.+
T Consensus 156 ~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I 235 (433)
T KOG0268|consen 156 HRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI 235 (433)
T ss_pred ccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence 0122223345578899999 6778899999999999999999999888777888899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc---------------------
Q 006360 129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT--------------------- 187 (648)
Q Consensus 129 afsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~--------------------- 187 (648)
+|+|.+-.++++++|..++.||++....++.+.. +|...|.+++|+|.|+-+++++.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999888899999999999999999888888877 89999999999999888777533
Q ss_pred ----------CCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 188 ----------CKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 188 ----------~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
+.+..++++|++|+.|++|.-...
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 345667888888888888866543
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=8.4e-18 Score=169.41 Aligned_cols=199 Identities=18% Similarity=0.251 Sum_probs=148.2
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 1 MYNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 1 AFSp-dG~~Lasgs~DG~V~IwDl~s-g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+||| ...+++.+++||+|++|++.. |..+.+....+.++|.+++|+.+|. .+++|+.|+.+++||+.+++ +..+.
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q--~~~v~ 110 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQ--VSQVA 110 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCC--eeeee
Confidence 5899 456777999999999999976 4555554445788999999999997 89999999999999999997 57788
Q ss_pred cCCCCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCceeeEeeC-----------------------------------
Q 006360 79 QHSAPTAGISFSSDD--KIIASVGLDKKLYTYDPGSRRPSSCITY----------------------------------- 121 (648)
Q Consensus 79 ~H~~~V~slafsPdg--~~LaSgs~Dg~I~IWDl~tgk~v~~~~h----------------------------------- 121 (648)
.|.++|..+.|-+.. ..|++|+.|++|++||++...++..+..
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~ 190 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF 190 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh
Confidence 999999999998744 4899999999999999987665543321
Q ss_pred -------CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC--CCc--eEEEeecC----CCCCeeEEEEccCCCeEEEec
Q 006360 122 -------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK--PQP--LTVLRACS----SSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 122 -------~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~--~~~--~~~l~~~~----h~~~VtsLafspdg~~Las~~ 186 (648)
+..+.||+...|....+.|+-+|.|-|..+... +.- ++..+..+ .-..|.+|+|+|....
T Consensus 191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt----- 265 (347)
T KOG0647|consen 191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT----- 265 (347)
T ss_pred hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-----
Confidence 223567777777777788888888888877654 111 11111100 0135778999995444
Q ss_pred cCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 187 TCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 187 ~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
|++.+.||++.+||-....-.
T Consensus 266 -------lvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 266 -------LVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred -------EEEecCCceEEEecchhhhhh
Confidence 445566999999997654443
No 81
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.78 E-value=2e-17 Score=170.27 Aligned_cols=196 Identities=14% Similarity=0.209 Sum_probs=162.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
.+|+.+++++|+.|...+||+..++..+.++.+ |++.|.++.|+.+|. +|++|+-+|.|+||+..++.... .+..--
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~-~~~~e~ 148 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQW-KLDQEV 148 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCce-EEEecCCCccEEEEEcccCceEE-Eeeccc
Confidence 578889999999999999999999999888887 888899999999998 99999999999999999887533 343445
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
+.|.-+.|+|.+.+|+.|+.||.|.+|.+..+...+++ +|..++++=.|.|||+.++++..||+|++||+.++ +++..
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~ 227 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHK 227 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeEE
Confidence 66888999999999999999999999999986555555 79999999999999999999999999999999998 55555
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~Ik 204 (648)
+..- .....+++.++..+..++.+ ..++...+.+..-++|.
T Consensus 228 ~~~~-e~~~~~~~~~~~~~~~~~~g--~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 228 ITQA-EGLELPCISLNLAGSTLTKG--NSEGVACGVNNGSGKVV 268 (399)
T ss_pred eccc-ccCcCCccccccccceeEec--cCCccEEEEccccceEE
Confidence 5432 25667888888888887777 33444444444444443
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=187.99 Aligned_cols=194 Identities=20% Similarity=0.223 Sum_probs=168.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEE-EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~-l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V 84 (648)
+.++++++.|++|++||..++..+.. +.+ |.+.|.+++|.. +..++++|+.|.++++||+.++.+ .+.+.+|...|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C-~~~l~gh~stv 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGEC-THSLQGHTSSV 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcE-EEEecCCCceE
Confidence 56788999999999999999998887 776 778889999986 444899999999999999999886 78899999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006360 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (648)
Q Consensus 85 ~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~ 163 (648)
.++... ..++++|+.|.+|++||+.++.++.++. |.++|.++.++ +.++++|+.|++|.|||+.+. ++++.+.
T Consensus 295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~- 368 (537)
T KOG0274|consen 295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLS- 368 (537)
T ss_pred EEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeec-
Confidence 998874 6788889999999999999999999997 99999999997 779999999999999999976 6677777
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC-CCccccccCcc
Q 006360 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS-VTTSSVSLSTA 222 (648)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~-~~~ss~ss~~~ 222 (648)
+|...|+++.+... ..+++++.|+.|++||++.. .+..++..+..
T Consensus 369 -gH~~~V~sl~~~~~-------------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 369 -GHTGRVYSLIVDSE-------------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred -CCcceEEEEEecCc-------------ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 79999999987541 57788899999999999988 66665554333
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=160.07 Aligned_cols=193 Identities=16% Similarity=0.185 Sum_probs=150.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC------C--------ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLAS------G--------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~s------g--------~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWD 66 (648)
+|+|.|.+.++|+...+++|..... + ..+++-..||.+.|.|++|+|+|+ +|++|+.|++|++.-
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~ 117 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLP 117 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEe
Confidence 6999999999999999998875421 1 123344457899999999999999 999999999999875
Q ss_pred CCCCCce---------------------------------------------------eEEeccCCCCeEEEEEccCCCE
Q 006360 67 TTGRSPK---------------------------------------------------VSWLKQHSAPTAGISFSSDDKI 95 (648)
Q Consensus 67 l~t~~~~---------------------------------------------------v~~l~~H~~~V~slafsPdg~~ 95 (648)
+....+. .+.+.+|.+.|..+- +-++-+
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m 196 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAM 196 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcE
Confidence 5321110 223445555555441 224678
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEee---C-----CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC
Q 006360 96 IASVGLDKKLYTYDPGSRRPSSCIT---Y-----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167 (648)
Q Consensus 96 LaSgs~Dg~I~IWDl~tgk~v~~~~---h-----~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~ 167 (648)
|++|+.|.+|++||++...++.++. | ...|..++..|.|.+|++|..|....+||++.+ .+++ ..+.|.
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq--~f~phs 273 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQ--RFHPHS 273 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceee--eeCCCc
Confidence 8899999999999999999988874 2 256899999999999999999999999999988 3344 444899
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 168 ~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
..|.++.|+| ...++++++.|..|++-|+.-
T Consensus 274 adir~vrfsp------------~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 274 ADIRCVRFSP------------GAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cceeEEEeCC------------CceEEEEecccceEEEeeccc
Confidence 9999999999 566777778899999988864
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.2e-18 Score=187.94 Aligned_cols=195 Identities=12% Similarity=0.153 Sum_probs=157.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+.+ ++|++++.|.+|++|++...+|++.|. |.+.|+||+|+|.++++|++|+-||.|+||++...+ +.....-
T Consensus 376 SWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl 450 (712)
T KOG0283|consen 376 SWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDL 450 (712)
T ss_pred ccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhh
Confidence 36654 588899999999999999999999998 899999999999888899999999999999998877 4445555
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEeCC-CCEEEEEEcCCeEEEEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYD 150 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---------h~~~I~slafsPd-G~~Lasgs~DG~V~IWD 150 (648)
...|+++||.|||++.++|+.+|.+++|++...+.+.... ....|+.+.|.|. ...|++.+.|..|+|||
T Consensus 451 ~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 451 RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 5889999999999999999999999999999877654431 1237999999973 44688888999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 151 l~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
.+.. .++..++.+.....-....|+.||++| |+++.|..|++|+...+..
T Consensus 531 ~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~I------------Vs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 531 GRDK-DLVHKFKGFRNTSSQISASFSSDGKHI------------VSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred ccch-hhhhhhcccccCCcceeeeEccCCCEE------------EEeecCceEEEEeCCCCcc
Confidence 9876 455666655444555666777765555 5556799999999865443
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.8e-19 Score=179.78 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=164.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.|+.|...||+|+.||.|+||.+.+|.|++.|...|...|+|+.|+.|+. .+++++.|.+|+|--++.+++ ++.+++|
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~-LKEfrGH 347 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKC-LKEFRGH 347 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchh-HHHhcCc
Confidence 48899999999999999999999999999999977999999999999998 689999999999999999886 6789999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee----------------------------------------
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------------------------------------- 120 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---------------------------------------- 120 (648)
...|+...|.+||++|++++.||+|++|+.++.+|+.++.
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 9999999999999999999999999999998766543221
Q ss_pred --------CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 006360 121 --------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET 192 (648)
Q Consensus 121 --------h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~ 192 (648)
..+...+++++|.|.++++.++|+.++.|.+.+++ ....+. .|...|..++.+|..+.+++.
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~-LE~tl~--VhEkdvIGl~HHPHqNllAsY------- 497 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK-LERTLP--VHEKDVIGLTHHPHQNLLASY------- 497 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc-eeeeee--cccccccccccCcccchhhhh-------
Confidence 12334567789999999999999999999998873 444554 688899999999976666665
Q ss_pred EEEEeeCCCeEEcCCC
Q 006360 193 ALLGGAVGDSILMPDP 208 (648)
Q Consensus 193 ~lvs~s~D~~IkvWDl 208 (648)
+.|+.+++|.+
T Consensus 498 -----sEDgllKLWkp 508 (508)
T KOG0275|consen 498 -----SEDGLLKLWKP 508 (508)
T ss_pred -----cccchhhhcCC
Confidence 56999999963
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.77 E-value=9.4e-18 Score=191.97 Aligned_cols=180 Identities=12% Similarity=0.234 Sum_probs=144.4
Q ss_pred ccCCCCEEEEEE--CCCcEEEEECCC------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 006360 2 YNCKDEHLASIS--LSGDLILHNLAS------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (648)
Q Consensus 2 FSpdG~~Lasgs--~DG~V~IwDl~s------------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl 67 (648)
.+|||..+++|+ .||.+.||+... .+.++.+.. |...|.||.|++||+ +||+|++|+.|.||+.
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSDDRLVMIWER 98 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccCcceEEEeee
Confidence 479999999999 899999998642 123344443 788999999999999 8999999999999998
Q ss_pred CC----CC-------------ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEE
Q 006360 68 TG----RS-------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA 129 (648)
Q Consensus 68 ~t----~~-------------~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~sla 129 (648)
.. .. ..+..+.+|...|.+++|+|++.++++++.|++|.|||.++.+.+..+ +|...|-.+.
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 62 00 125678899999999999999999999999999999999999888777 6999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEEE
Q 006360 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 130 fsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~----~h~~~VtsLafspdg~~Las 184 (648)
|+|-|+||++-+.|++|+||++... ...+.+..+ .-...+..+.|+|||.||++
T Consensus 179 ~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 179 WDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 9999999999999999999997653 122222211 11233556677777777765
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.2e-17 Score=175.23 Aligned_cols=177 Identities=20% Similarity=0.262 Sum_probs=149.7
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSpdG-~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|+|++ ..+++|+.|+.+++||+.+.....++.+ |.+.|+|.+|+|-..+++++|++||+|++||++.... ...-..|
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnh 195 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNH 195 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecC
Confidence 67765 4678889999999999988777557776 8899999999999888999999999999999987753 3345678
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg-k~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
..+|..+.+-|.|.+|++++.. .|++||+-+| +.+..+ .|...|+|+++..++..|++|+-|+.|++||+.+.
T Consensus 196 g~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---- 270 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---- 270 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----
Confidence 9999999999999999998865 6999999865 444444 49999999999999999999999999999997765
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+++....-.++|.+++.+|++..++.+
T Consensus 271 Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 271 KVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEeeecccceeeEEecCCCceEEEe
Confidence 556656678999999999987776666
No 88
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.8e-19 Score=196.24 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=167.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
++.+++|+.|-.+-+|.+..-..+..|.+ |...|.+|.|+.... +|++|+.+|+|++||+...+. ++.+.+|...+.
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~-vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI-VRTLTGHLLNIT 116 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhhh-hhhhhccccCcc
Confidence 46788999999999999877667777776 888999999999887 899999999999999988774 789999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeec
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC 164 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~ 164 (648)
.+.|+|-+.+++.++.|+.+++||++...|...+ +|...+.++.|+|+|.+++.|++|..|+|||+..++ ....+.
T Consensus 117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~-- 193 (825)
T KOG0267|consen 117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFK-- 193 (825)
T ss_pred eeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccc--
Confidence 9999999999999999999999999977777776 488889999999999999999999999999998872 233333
Q ss_pred CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 165 SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 165 ~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
.|.+.|.++.|+| .+.++..|+.|++|++||++.+....+
T Consensus 194 ~~e~~v~sle~hp------------~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 194 SHEGKVQSLEFHP------------LEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred cccccccccccCc------------hhhhhccCCCCceeeeeccceeEEeec
Confidence 6999999999999 455666667899999999997766543
No 89
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.4e-17 Score=185.89 Aligned_cols=183 Identities=15% Similarity=0.214 Sum_probs=158.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|+|.+.++++|+.|-.|+||+.++.+++.++.+ |-+.|+.+.|++.-. .|+++++|.+|+||+..++.+ +..+.+|
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~-iavltGH 134 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC-IAVLTGH 134 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce-EEEEecC
Confidence 5999999999999999999999999999999997 778899999999988 899999999999999999986 7899999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc----------------------------eee-Ee-eCCCCeEEEEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------------------PSS-CI-TYEAPFSSLAF 130 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk----------------------------~v~-~~-~h~~~I~slaf 130 (648)
...|.|..|+|...+|++++-|.+|++||+..-+ .++ ++ +|...|+-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 9999999999999999999999999999984210 111 11 58888999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 131 sPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
+|.-.+|++|+.|..|++|.+...+ ...+-.-.+|.+.|.++-|+|...++++.+.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSE 270 (1202)
T ss_pred cCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCC
Confidence 9999999999999999999998652 2333333489999999999998888888643
No 90
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=2.3e-18 Score=182.27 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=153.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~--~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
+.|||+.|++|+.-.+|.|||+....... ++.. ....+.+++.+||.+ +.++|..||.|.|||+.+.. .++.+.+
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~VrqfqG 549 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQG 549 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeecccC
Confidence 46899999999999999999997654332 2332 345678899999998 88999999999999998876 4889999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
|.+.+.||.+++||..|.+|+-|.+|+.||++.++.+........|.++.++|.+.+|++|-+++.|.|.......
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---- 625 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---- 625 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----
Confidence 9999999999999999999999999999999999988888888999999999999999999999999998887763
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
.+..+-|...|.++.|.+.|+++++.
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ceeecccccEEEEEEecccCceeeec
Confidence 23344799999999999988887764
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.1e-18 Score=187.74 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=162.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 006360 4 CKDEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW 76 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~~ 76 (648)
|++++|++||.||.|++|++.... .+..++ +|.+.|+++....+++ .|++++.|-+|++|+..... ....+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence 567899999999999999985432 244555 4778888888888887 79999999999999996542 33678
Q ss_pred eccCCCCeEEEEE-ccCCCEEEEEeCCCeEEEEeCCCCc--eeeEe----------eCCCCeEEEEEeCCCCEEEEEEcC
Q 006360 77 LKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRR--PSSCI----------TYEAPFSSLAFIDDDWILTAGTSN 143 (648)
Q Consensus 77 l~~H~~~V~slaf-sPdg~~LaSgs~Dg~I~IWDl~tgk--~v~~~----------~h~~~I~slafsPdG~~Lasgs~D 143 (648)
+..|.+.|.|+++ .++..++++|+-|+.|.+||+.++. .+..+ ++...|++++.++.|..|+.|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 8999999999999 6799999999999999999999772 22211 467789999999999999999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 144 G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
+.|++||.++.++. .+..+|...|.++..++||. .+++++.|++|++||+.-..+..++..
T Consensus 193 k~lr~wDprt~~ki---mkLrGHTdNVr~ll~~dDGt------------~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKI---MKLRGHTDNVRVLLVNDDGT------------RLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred cceEEeccccccce---eeeeccccceEEEEEcCCCC------------eEeecCCCceEEeeeccccceeeeEEe
Confidence 99999999998543 33338999999999988554 456667799999999997777665444
No 92
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.7e-17 Score=174.29 Aligned_cols=195 Identities=16% Similarity=0.254 Sum_probs=160.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCcee---EEE-----------------eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 006360 5 KDEHLASISLSGDLILHNLASGAKA---AEL-----------------KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i---~~l-----------------~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~I 64 (648)
.|+++|.|..|..|.|||+.-...+ ..+ ..+|...|-.+.|+.+-+++|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999998532110 000 11466777789999998999999999999999
Q ss_pred EECCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEeCC-CCEEEEEE
Q 006360 65 WDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDD-DWILTAGT 141 (648)
Q Consensus 65 WDl~t~~~~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tg-k~v~~~~h~~~I~slafsPd-G~~Lasgs 141 (648)
||+.++++ ...+..|...|.++.|+| ...+|++|+.|++|.+.|.|.. ..-..+...+.|..++|+|. ...+++++
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999987 567778999999999999 7889999999999999999953 33355567889999999995 45677888
Q ss_pred cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 142 ~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
.||+|+-+|+|...+++..+. .|.+.|.+|+++.. ...++.+++.|+.|++|++....+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~-----------~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQ-----------TPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred CCceEEeeecCCCCCceeEEE--eccCCcceEEecCC-----------CCcceeeccccceEEEEeecCCCC
Confidence 999999999999888887777 89999999999875 334566678899999999875544
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=2.5e-17 Score=181.62 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=160.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC-----CceeEEEeCC------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS-----GAKAAELKDP------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s-----g~~i~~l~~~------~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
.+||+..+++|+.|.+|++||..- |...+.+.-+ -.+.|.|+.++||++ +|+.+--|++|+||-+++-
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce
Confidence 479999999999999999999741 2111111111 246688999999999 8999999999999999988
Q ss_pred CceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 006360 71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (648)
Q Consensus 71 ~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IW 149 (648)
+- ...+++|.-+|.|+..+||+++|++|+.|+.|++|-+.=|.|.+.+ .|...|.++.|.|+...+++++.|+.|+-|
T Consensus 541 KF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 541 KF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 74 5678999999999999999999999999999999999999887655 799999999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
|-.... .++.+. +|...|+|++..|+|.|++++ +.|..|++|.-.
T Consensus 620 Dg~kFe-~iq~L~--~H~~ev~cLav~~~G~~vvs~------------shD~sIRlwE~t 664 (888)
T KOG0306|consen 620 DGEKFE-EIQKLD--GHHSEVWCLAVSPNGSFVVSS------------SHDKSIRLWERT 664 (888)
T ss_pred chhhhh-hheeec--cchheeeeeEEcCCCCeEEec------------cCCceeEeeecc
Confidence 988763 344444 899999999999977666554 669999999654
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.75 E-value=5.8e-17 Score=169.68 Aligned_cols=191 Identities=17% Similarity=0.228 Sum_probs=156.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~-~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.+|.|+||++++.||+....|+.++.++...... ..-.+++.+|+|||- +|.+|..|+.|+|||+..... +..+.+|
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~-~a~Fpgh 388 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTN-VAKFPGH 388 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccc-cccCCCC
Confidence 4789999999999999999999999998877742 234588999999997 899999999999999988773 7789999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee--CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~--h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
.++|..|.|+.+|.+++++.+|+.|++||+|.-+.+..+. ....+.++.|++.|.+|+.++.|=+|++++-.+. .--
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~ 467 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWT 467 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc-cce
Confidence 9999999999999999999999999999999988777774 3446999999999999999988777777765443 222
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCC
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWD 207 (648)
.+.....|.+..+++.|..+.++ +++++.|..++++-
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~------------l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQY------------LASTSMDAILRLYA 504 (506)
T ss_pred eeehhhhcccccceeeecccceE------------EeeccchhheEEee
Confidence 33344478889999999775444 45556677666653
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=2.3e-17 Score=173.97 Aligned_cols=194 Identities=17% Similarity=0.215 Sum_probs=159.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|.++||+|||+|+.|..|.||+..+++.+..+.+ |.+.|.+++|-.... .+++++.|..|++|+++.... +..+.+|
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~-vetlyGH 285 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSY-VETLYGH 285 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCcc-ceeeeecCCceEEEehhHhHH-HHHHhCC
Confidence 4689999999999999999999999999999886 788889999976544 799999999999999987764 6789999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
.+.|..|....-++.+.+|+.|+++++|++.....+...++.+.+.|++|-.+ ..+++|+.||.|.+|++...+ ++.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk-plf~ 363 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK-PLFT 363 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC-ceeE
Confidence 99999999887888888888999999999965555555578889999999865 689999999999999998874 4443
Q ss_pred Eee-c---------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 161 LRA-C---------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 161 l~~-~---------~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
... + .+...|++|+..| ...++.+++.+|.|++|.+...
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~------------~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIP------------GSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeccccccCCccccccccceeeeEecc------------cCceEEecCCCCceEEEEecCC
Confidence 332 1 1112677777766 5556677788999999977654
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.75 E-value=4.3e-17 Score=186.65 Aligned_cols=190 Identities=16% Similarity=0.244 Sum_probs=152.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC------------------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s------------------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~ 63 (648)
|++||++||+|+.|+.|.||.... .+++..+.+ |...|.+|+|+|++. +|++++.|++|.
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~-~lvS~s~DnsVi 154 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDS-LLVSVSLDNSVI 154 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCcc-EEEEecccceEE
Confidence 899999999999999999999762 125566776 677788899999998 999999999999
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce----------------------------
Q 006360 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---------------------------- 115 (648)
Q Consensus 64 IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~---------------------------- 115 (648)
|||..+.+ .+..+++|...|-.+.|.|-|+||++-+.|++|++|++.+-.+
T Consensus 155 iwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 155 IWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 99999985 5889999999999999999999999999999999999632110
Q ss_pred -------------------------eeEeeCCCCeEEEEEeCC-----CC------------EEEEEEcCCeEEEEECCC
Q 006360 116 -------------------------SSCITYEAPFSSLAFIDD-----DW------------ILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 116 -------------------------v~~~~h~~~I~slafsPd-----G~------------~Lasgs~DG~V~IWDl~s 153 (648)
...++|.+++.++.|+|. .+ ++|+|+.|+.|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 112358899999999982 11 678999999999999976
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 154 ~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
. .|+.++.. -....|..++|+|||..|.. ++.||+|.+.+.
T Consensus 314 ~-RPl~vi~~-lf~~SI~DmsWspdG~~Lfa------------cS~DGtV~~i~F 354 (942)
T KOG0973|consen 314 P-RPLFVIHN-LFNKSIVDMSWSPDGFSLFA------------CSLDGTVALIHF 354 (942)
T ss_pred C-Cchhhhhh-hhcCceeeeeEcCCCCeEEE------------EecCCeEEEEEc
Confidence 6 44443332 24578999999997655544 456777766654
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=4.9e-17 Score=159.00 Aligned_cols=195 Identities=15% Similarity=0.249 Sum_probs=160.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEeccC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLKQH 80 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~~l~~H 80 (648)
.+.|...|++++.|..|.+||+.+|+.++.+.+ |...|+.|+|+.+.. ++++|+.|..+++||.+... ..++.+...
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea 144 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA 144 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeeccc-ccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh
Confidence 345677899999999999999999999999997 778899999998887 99999999999999997653 337778888
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
.+.|.+|..+ +..|+.|+.||+++.||++.|+...- ....+|+|++|++|++.+++++-|++|++.|-.++ +.++.
T Consensus 145 ~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~s 220 (307)
T KOG0316|consen 145 KDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKS 220 (307)
T ss_pred cCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHH
Confidence 8999999886 78899999999999999999876432 25679999999999999999999999999999988 45566
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~Ik 204 (648)
+..+...+.-...++.....+++++ +.++.++++.-.|..+.
T Consensus 221 YkGhkn~eykldc~l~qsdthV~sg--SEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 221 YKGHKNMEYKLDCCLNQSDTHVFSG--SEDGKVYFWDLVDETQI 262 (307)
T ss_pred hcccccceeeeeeeecccceeEEec--cCCceEEEEEeccceee
Confidence 6633333344455666666677777 55788888777776654
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.3e-16 Score=161.32 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=136.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|+|.++.|+++++||.+++||+........++ |..++.+++|.++. .+++|+.||.|+.+|+.++. ...+..|.
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~--~~~igth~ 94 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN--EDQIGTHD 94 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCc--ceeeccCC
Confidence 67888888889999999999998877666666 77889999999765 49999999999999999887 45678999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l 161 (648)
..|.||++.+....+++|+.|++|++||.+....+..+.....|.|+... |+.|++|+.|..|.+||+++...+.+.
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~- 171 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR- 171 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-
Confidence 99999999998889999999999999999986666666667788888775 679999999999999999987554421
Q ss_pred eecCCCCCeeEEEEccC
Q 006360 162 RACSSSEAVSSLCWQRA 178 (648)
Q Consensus 162 ~~~~h~~~VtsLafspd 178 (648)
+.......+.||++-|+
T Consensus 172 reS~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPN 188 (323)
T ss_pred ccccceeEEEEEEEecC
Confidence 11123344555555553
No 99
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=3.8e-17 Score=164.04 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=151.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCc------ee----EE----EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006360 5 KDEHLASISLSGDLILHNLASGA------KA----AE----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~------~i----~~----l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
.|+++++|+.||.|.|||++... .+ +. ....|...|..+.|-|-+.-+|.+++.|++++|||..+-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 47899999999999999997532 11 11 122467788999999977669999999999999999887
Q ss_pred CceeEEeccCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCC-EEEEEEcCCe
Q 006360 71 SPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGR 145 (648)
Q Consensus 71 ~~~v~~l~~H~~~V~slafsP---dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~-~Lasgs~DG~ 145 (648)
+. .......+.|+.-+|+| .+.+|++|..|-.|++.|+..|.+...+ +|.+.|.++.|+|... +|++|+.||.
T Consensus 135 Q~--a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 135 QE--AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred ee--eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 74 23334567899999999 4678888888999999999999988877 6999999999999755 5678999999
Q ss_pred EEEEECCCCCCceEEEee------------cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 146 VVFYDIRGKPQPLTVLRA------------CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 146 V~IWDl~s~~~~~~~l~~------------~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
|++||++....++.++.. ..|.+.|.+++|..++.+++++ +.|..+++|+..
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~------------gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC------------GTDDRIRVWNME 276 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc------------cCccceEEeecc
Confidence 999999865444444432 3678889999999877776665 458899999764
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=4.9e-17 Score=177.11 Aligned_cols=193 Identities=19% Similarity=0.254 Sum_probs=158.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC--ceeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 006360 3 NCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSP------- 72 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg--~~i~~l~~~~~~~V~~Vaf-spdg~~lLaSgs~Dg~V~IWDl~t~~~------- 72 (648)
-.+++.|++++.|-+|++|+...+ -++.++.. |.+.|.|+++ -++.. ++|+|+-|+.|.|||+.++..
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhhc-ccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc
Confidence 357889999999999999998776 35555654 8889999999 55555 999999999999999986521
Q ss_pred --eeEEec-cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee-eEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEE
Q 006360 73 --KVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (648)
Q Consensus 73 --~v~~l~-~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v-~~~~h~~~I~slafsPdG~~Lasgs~DG~V~I 148 (648)
....+. ++...|++++-++.+..|++|+..+.|++||.++++.+ ...+|...|.++..++||..+++++.||+|++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 122333 88899999999999999999999999999999998755 44489999999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 149 WDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
||+.... ++..+. .|...|+++..+++-. .+++|+.|+.|..-|++.+.
T Consensus 240 WdLgqQr-Cl~T~~--vH~e~VWaL~~~~sf~------------~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 240 WDLGQQR-CLATYI--VHKEGVWALQSSPSFT------------HVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred eeccccc-eeeeEE--eccCceEEEeeCCCcc------------eEEecCCCCcEEecccCCch
Confidence 9999874 344444 6888899999888544 44555668888888888753
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.7e-17 Score=161.58 Aligned_cols=195 Identities=15% Similarity=0.227 Sum_probs=156.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCC---ceeEEEeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 006360 4 CKDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS-PKVSWL 77 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg---~~i~~l~~~~~~~V~~Vafsp--dg~~lLaSgs~Dg~V~IWDl~t~~-~~v~~l 77 (648)
.-|++||+++.|+.|+||.++.. +.+.++.+ |.++|..++|.. .|. +|++++.||.|.||.-.+++ .+....
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhhh
Confidence 35889999999999999998754 46778887 778888899965 565 99999999999999997764 224456
Q ss_pred ccCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCCCC-c-eee--EeeCCCCeEEEEEeCC---C-----------CEE
Q 006360 78 KQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-R-PSS--CITYEAPFSSLAFIDD---D-----------WIL 137 (648)
Q Consensus 78 ~~H~~~V~slafsP--dg~~LaSgs~Dg~I~IWDl~tg-k-~v~--~~~h~~~I~slafsPd---G-----------~~L 137 (648)
..|...|++|+|.| .|-.|++++.||.|.+.+.+.. . ... ...|.-.|++++|.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 67999999999999 6788999999999999998764 2 222 2258899999999985 4 569
Q ss_pred EEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 138 TAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 138 asgs~DG~V~IWDl~s~~~~~-~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
++|+.|..|+||+.....-.. +.+. +|.+.|..++|.|.-. -....+++++.|++|.||-.+.
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~g--------l~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVG--------LPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhccccC--------CCceeeEEecCCCcEEEEEecC
Confidence 999999999999998752211 2234 8999999999999632 3455688889999999997663
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.74 E-value=2.6e-17 Score=166.10 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=142.0
Q ss_pred CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-----------------CCCceeEEeccCCCCeEEEEEccCCCEE
Q 006360 34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-----------------GRSPKVSWLKQHSAPTAGISFSSDDKII 96 (648)
Q Consensus 34 ~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~-----------------t~~~~v~~l~~H~~~V~slafsPdg~~L 96 (648)
..|..++++.+|++||. ++++|+.|..|+|+|+. ..-+.++.+..|.+.|+++.|+|...+|
T Consensus 109 t~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred eecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 34889999999999998 99999999999999985 1124578899999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCC---ceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE
Q 006360 97 ASVGLDKKLYTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL 173 (648)
Q Consensus 97 aSgs~Dg~I~IWDl~tg---k~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsL 173 (648)
++++.|++|++||+... +..+.+....+|.++.|+|.|.+|++|.....+++||+.+..+.+.......|.+.|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 99999999999999754 334555677899999999999999999999999999999975444444445899999999
Q ss_pred EEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 174 afspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
.+++ .+.++++++.||.|++||-....+.
T Consensus 268 ~Ys~------------t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 268 RYSS------------TGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred EecC------------CccEEEEeccCCcEEeeccccHHHH
Confidence 9998 4556777788999999997654443
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=2.6e-17 Score=171.55 Aligned_cols=189 Identities=17% Similarity=0.269 Sum_probs=146.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------- 73 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~-------- 73 (648)
|.+++.++++++.|+.+++|++...+...++.+ |.+.|+++.|..... .+++|+.|.+|++||+....+.
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccccc
Confidence 778899999999999999999999998888987 777788888765543 3666666666666665432211
Q ss_pred ------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---
Q 006360 74 ------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--- 120 (648)
Q Consensus 74 ------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~--- 120 (648)
......+ +.|+++..++++..|.+++.|.++.+.|+++..+...+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG 383 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence 1122222 368899999999999999999999999999988777763
Q ss_pred --CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006360 121 --YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (648)
Q Consensus 121 --h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s 198 (648)
.....+.++|+|++.|+++|+.||.|+||++.++ ++.++++.......|++++|++.|.+++++ +
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsa------------d 450 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSA------------D 450 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhcc------------c
Confidence 3445889999999999999999999999999998 455666654434479999999977776665 4
Q ss_pred CCCeEEcC
Q 006360 199 VGDSILMP 206 (648)
Q Consensus 199 ~D~~IkvW 206 (648)
.++.+.+|
T Consensus 451 k~~~v~lW 458 (459)
T KOG0288|consen 451 KQKAVTLW 458 (459)
T ss_pred CCcceEec
Confidence 47777877
No 104
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.73 E-value=6.2e-17 Score=167.11 Aligned_cols=178 Identities=18% Similarity=0.319 Sum_probs=138.3
Q ss_pred CccCCC-CEEEEEECCCcEEEEECCCCceeE---EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 006360 1 MYNCKD-EHLASISLSGDLILHNLASGAKAA---ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVS 75 (648)
Q Consensus 1 AFSpdG-~~Lasgs~DG~V~IwDl~sg~~i~---~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~ 75 (648)
+|||-- ..|++|..-+.|++|...+|.-.. -+.+ |...|-.++|+|..+.+|++|+.||+|+|||++.+. ....
T Consensus 218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 366632 257788888899999988765332 3444 888999999999999999999999999999998762 2233
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC---ceeeEe-eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD 150 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg---k~v~~~-~h~~~I~slafsPd-G~~Lasgs~DG~V~IWD 150 (648)
..+.|...|+.|.|+.+-.+|++|+.||+++|||++.- +++..+ .|..+|+++.|+|. ...|++++.|.+|.|||
T Consensus 297 ~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 45899999999999997779999999999999999864 566666 49999999999994 66888999999999999
Q ss_pred CCCCCC---------------ceEEEeecCCCCCeeEEEEccCC
Q 006360 151 IRGKPQ---------------PLTVLRACSSSEAVSSLCWQRAK 179 (648)
Q Consensus 151 l~s~~~---------------~~~~l~~~~h~~~VtsLafspdg 179 (648)
+.-... |-+.+-.+.-...|..|.|+++-
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi 420 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI 420 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCC
Confidence 963211 11222222234568889999863
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-16 Score=174.99 Aligned_cols=198 Identities=18% Similarity=0.283 Sum_probs=159.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H 80 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~-H 80 (648)
|+ ..+.|++|. ...|++|+..++........ +...|++|.|+++|. +|++|..+|.|.|||....+. +..+.+ |
T Consensus 185 Ws-s~n~laVal-g~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~-~~~~~~~h 259 (484)
T KOG0305|consen 185 WS-SANVLAVAL-GQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK-TRTLRGSH 259 (484)
T ss_pred cc-cCCeEEEEe-cceEEEEecCCCceEEeEec-CCCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc-cccccCCc
Confidence 44 345666664 45799999988875554443 378899999999999 899999999999999977764 566777 9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~-~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
...|-+++|+ ...+.+|+.|+.|..+|++..+.... + .|...|..++|++|++++|+|+.|+.|.|||..... +.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-cc
Confidence 9999999998 78899999999999999998775543 3 599999999999999999999999999999996653 33
Q ss_pred EEEeecCCCCCeeEEEEccCC-CeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 159 TVLRACSSSEAVSSLCWQRAK-PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg-~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
..+. .|...|.+++|+|-. ..||++ +|+.|++|++||+..-.....+.+
T Consensus 337 ~~~~--~H~aAVKA~awcP~q~~lLAsG----------GGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 337 FTFT--EHTAAVKALAWCPWQSGLLATG----------GGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred EEEe--ccceeeeEeeeCCCccCceEEc----------CCCcccEEEEEEcCCCcEeccccc
Confidence 3344 799999999999954 345554 235599999999986555554444
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.9e-18 Score=187.35 Aligned_cols=178 Identities=20% Similarity=0.311 Sum_probs=156.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|+.+..+|+.|..+|+|++||++.++.++++.+ |...+..|.|+|.+. +++.|+.|+.+++||++...+ .+.+.+|.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~ 154 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-SHTYKSHT 154 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceE-EeccccccccceehhhhccCc-eeeecCCc
Confidence 667778899999999999999999999999987 556667799999998 789999999999999986554 67888899
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
..|.++.|+|+|++++.+++|.+++|||...|+....+. |.+.+..+.|+|..-.++.|+.|++|++||+++.. . +
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~--I 231 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-V--I 231 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-E--e
Confidence 999999999999999999999999999999999998886 99999999999999999999999999999999752 1 1
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEe
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
-........|.++.|+++++.++++
T Consensus 232 ~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eccCCccCCceeeeecCCceeeecC
Confidence 1222446789999999999988886
No 107
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.2e-16 Score=176.17 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=166.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC------CCCceeE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT------GRSPKVS 75 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~------t~~~~v~ 75 (648)
|-|.++++++|...|.+.+||+.+...+.+++. |.+.|..++.+||+. .+++|+.|++|++||.. +.+.++.
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRA-HDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhc-cccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 567788899999999999999988888877774 788899999999998 79999999999999983 1111111
Q ss_pred -----EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee-eEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 006360 76 -----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (648)
Q Consensus 76 -----~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v-~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IW 149 (648)
....-.+.|.|+.++||+++++.+--|.+|++|-+.+-+.. ..++|.-+|.|+..+||++.+++|+.|..|+||
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 11234578999999999999999999999999999998754 556899999999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccccc
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~s 218 (648)
-++-+.+ .+.+ ++|...|.++.|.| ...++++++.|+.|+.||-..+.....+.
T Consensus 578 GLdFGDC-HKS~--fAHdDSvm~V~F~P------------~~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 578 GLDFGDC-HKSF--FAHDDSVMSVQFLP------------KTHLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred ccccchh-hhhh--hcccCceeEEEEcc------------cceeEEEecCcceEEeechhhhhhheeec
Confidence 9987743 3333 38999999999999 45667777889999999998888765543
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=6.2e-17 Score=177.15 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=158.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd--g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+.+|+|++||+|..-|+|+||++..-+....+.. |...|.|+.|+.. ++.+|++++.|..|+|||+......+..+.
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred EECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 4689999999999999999999988888888886 7788899999852 345899999999999999965443444444
Q ss_pred cCCCCe-------------------------------------------------EEEEEccCCCEEEEEeCCCeEEEEe
Q 006360 79 QHSAPT-------------------------------------------------AGISFSSDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 79 ~H~~~V-------------------------------------------------~slafsPdg~~LaSgs~Dg~I~IWD 109 (648)
+|...| ++++..|..+++++++.|+.|+|||
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 444444 5556666668888999999999999
Q ss_pred CCCCceeeEee----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 110 PGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 110 l~tgk~v~~~~----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+..++.++.+. |++....+...|.|.||++.+.|.++.+||.-++++ +-..++|.+.|+.+.|.+|.++|
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc---vA~m~GHsE~VTG~kF~nDCkHl--- 698 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC---VAQMTGHSEAVTGVKFLNDCKHL--- 698 (1080)
T ss_pred ccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh---hhhhcCcchheeeeeecccchhh---
Confidence 99999998883 678889999999999999999999999999999853 23344899999999999965554
Q ss_pred ccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 186 TTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 186 ~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
++.+.|++|.||.+.
T Consensus 699 ---------ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 699 ---------ISVSGDGCIFVWKLP 713 (1080)
T ss_pred ---------eeecCCceEEEEECc
Confidence 555779999999875
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.71 E-value=1.8e-17 Score=172.68 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=142.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~--~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
|-++...|++|+.|..|++|++...+ .+..+.+ ..+.|+.++|.+++. .+++++.|+.+++|++...+. .+.+.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r~-~~TLsG 259 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLRL-RHTLSG 259 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCc-eEEeecCCCceeeeeccchhh-hhhhcc
Confidence 44566789999999999999986655 4556665 556789999999998 577778999999999988875 678999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
|.+.|+++.|......+++|+.|.+|++||+....|.+.+-....+..|+.+ ...+++|+.|++|++||+++... ..
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~ 336 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TR 336 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCce-ee
Confidence 9999999999987767999999999999999999988887667777777776 55788999999999999998742 23
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEE
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las 184 (648)
.+. -.+.|+++..+++|..+.+
T Consensus 337 sv~---~gg~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 337 SVP---LGGRVTSLDLSMDGLELLS 358 (459)
T ss_pred Eee---cCcceeeEeeccCCeEEee
Confidence 333 3458888888887766555
No 110
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=9.1e-14 Score=147.72 Aligned_cols=190 Identities=14% Similarity=0.199 Sum_probs=150.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CCCe
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SAPT 84 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H-~~~V 84 (648)
..|+++|+..++|+|||++...+++.+++ |...|++|.|+-.+. +|++++..|.|.|..+.++.. ...+... ...|
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkd-h~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsv 167 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKD-HQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSV 167 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccC-CcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc-ccceecCCCCeE
Confidence 46899999999999999985556666665 678999999998877 899999999999999988764 2333333 3456
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 85 ~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~--~h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
.-+.|++ ...+|.+++.+|.|.+||+....++..+ .|..+...|+|+|. ..+|++.+.|..|++||++... ....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~ 246 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDR 246 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccce
Confidence 6899999 5567788999999999999887776655 59999999999995 5678889999999999999763 2333
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
+. ...+...|+|.++|-+|+.+ ...|.|..||+|.-..+
T Consensus 247 l~---y~~Plstvaf~~~G~~L~aG------------~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 247 LT---YSHPLSTVAFSECGTYLCAG------------NSKGELIAYDMRSTKAP 285 (673)
T ss_pred ee---ecCCcceeeecCCceEEEee------------cCCceEEEEecccCCCC
Confidence 33 46789999999976655554 56899999999965543
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.8e-15 Score=147.10 Aligned_cols=192 Identities=16% Similarity=0.249 Sum_probs=147.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCcee-----EEEeCCCCCcEEEEEEc-----------------------------
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYS----------------------------- 46 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i-----~~l~~~~~~~V~~Vafs----------------------------- 46 (648)
||+|+|++|++|+.|..|++.-++...+. .++.. |.+.|+.++|.
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 69999999999999999998765422110 11211 23333333332
Q ss_pred -----------------cCCCeEEEEEeCCCeEEEEECCCCCceeEEecc--C-----CCCeEEEEEccCCCEEEEEeCC
Q 006360 47 -----------------RNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ--H-----SAPTAGISFSSDDKIIASVGLD 102 (648)
Q Consensus 47 -----------------pdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~--H-----~~~V~slafsPdg~~LaSgs~D 102 (648)
-++- +|++|++|.+|++||++-..+ +..+.. | ...|..++..|.|++|++|-.|
T Consensus 175 ~~~a~sghtghilalyswn~~-m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGA-MFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEEEEecCc-EEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 1232 788999999999999987664 333321 2 2569999999999999999999
Q ss_pred CeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC---CCceEEEeecCCCCCeeEEEEccC
Q 006360 103 KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 103 g~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~---~~~~~~l~~~~h~~~VtsLafspd 178 (648)
....+||++.++.++.+ .|...|.|+.|+|...|+++++.|..|++-|+... +.++.++. .|...+..+.|+|.
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQ 330 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCc
Confidence 99999999999988777 69999999999999999999999999999999863 22333443 79999999999994
Q ss_pred CCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 179 KPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 179 g~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
..-+++.+.|+++.+|-+.
T Consensus 331 ------------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 ------------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ------------cceeeeccCcceEEEeccC
Confidence 4556777789999999764
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.8e-16 Score=173.85 Aligned_cols=192 Identities=20% Similarity=0.248 Sum_probs=157.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
+..++++|++|+.+++|.+|...+++.-..+.. -.-.+++++|+.+|. +++.|++|-.|++-+...... ...+++|.
T Consensus 62 ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~-~~~lrgh~ 138 (933)
T KOG1274|consen 62 IACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ-EKVLRGHD 138 (933)
T ss_pred EeecccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCc-EEEeecCceeEEEEeccccch-heeecccC
Confidence 345678999999999999999987764433321 335788999999998 899999999999999977664 57889999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---------h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
++|.+|.|+|++++||+.+.||.|++||+.++.+...+. ....+..++|+|+|..+++...|+.|++|+..
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 999999999999999999999999999999988776653 13346789999998889999999999999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 153 s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
+.... ..+....+...+.++.|+|+|+|||++ ..|+.|.|||+.
T Consensus 219 ~we~~-f~Lr~~~~ss~~~~~~wsPnG~YiAAs------------~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 219 GWELQ-FKLRDKLSSSKFSDLQWSPNGKYIAAS------------TLDGQILVWNVD 262 (933)
T ss_pred Cceeh-eeecccccccceEEEEEcCCCcEEeee------------ccCCcEEEEecc
Confidence 98544 344444455559999999998888877 347777777776
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=3.2e-16 Score=165.33 Aligned_cols=200 Identities=15% Similarity=0.247 Sum_probs=167.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEE-Ee----------------CCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAE-LK----------------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~-l~----------------~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~ 63 (648)
++++|+.++++++.+|+|.-|++.+++.... +. ..|...+.+++.++|++ +|++|+.|..|.
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~ 227 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQ 227 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EEEecCCCceEE
Confidence 4789999999999999999999988874311 00 13556678899999999 899999999999
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-EeeCCCCeEEEEEeCCCCEEEEEEc
Q 006360 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 64 IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~-~~~h~~~I~slafsPdG~~Lasgs~ 142 (648)
|||.++.+. ++.+.+|.+.|.+++|--....+++++.|+.|++|++.....+. .++|...|..+....-+..+.+|+.
T Consensus 228 Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 228 IWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred EecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccc
Confidence 999999885 67899999999999999888899999999999999998876554 4589999999988888888888999
Q ss_pred CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 143 DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
|+++++|++....+ .++ .+|.+.+-|++|-. ...+++|+.+|.|.+|++....+..+...
T Consensus 307 DrT~rlwKi~eesq--lif--rg~~~sidcv~~In-------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 307 DRTVRLWKIPEESQ--LIF--RGGEGSIDCVAFIN-------------DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred cceeEEEeccccce--eee--eCCCCCeeeEEEec-------------ccceeeccCCceEEEeeecccCceeEeec
Confidence 99999999965532 233 37888999999874 45678889999999999998888766544
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=6.3e-16 Score=156.39 Aligned_cols=193 Identities=18% Similarity=0.279 Sum_probs=161.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~ 83 (648)
..|+.++++++|.+..+||+++|+.+..+.+ |....+.++-+|..+ ++++.+.|.+.++||++.....+..+.+|.+.
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccc
Confidence 3578899999999999999999999999998 555566667888877 89999999999999998766668899999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEE-
Q 006360 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL- 161 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l- 161 (648)
|+++.|.-+ ..+++|+.|.+|++||++..+ ++.++....+++.++.+..+.+|+.-..+..|++||+..... .+.-
T Consensus 360 VTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPr 437 (481)
T KOG0300|consen 360 VTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARLPR 437 (481)
T ss_pred eeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccCCc
Confidence 999999964 468999999999999999764 678888899999999999888999999999999999987532 1111
Q ss_pred -eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 162 -RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 162 -~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
...+|...|+|++|..+... .-+++++.|+.+.-|.+..
T Consensus 438 tsRqgHrRMV~c~AW~eehp~----------cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 438 TSRQGHRRMVTCCAWLEEHPA----------CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccccccceeeeeeeccccCcc----------cccccccccceeeeeEecc
Confidence 23489999999999875332 2367778899999998764
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=7.8e-16 Score=155.31 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=133.4
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 006360 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (648)
Q Consensus 30 ~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t-~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IW 108 (648)
.++.....+.|.+|+|+|...++++++++|++|++|+++. +...-+....|.++|.+++|+-||..+++|+.|+.+++|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 4555667889999999997776888999999999999966 343335667899999999999999999999999999999
Q ss_pred eCCCCceeeEeeCCCCeEEEEEeCCCC--EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 109 DPGSRRPSSCITYEAPFSSLAFIDDDW--ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 109 Dl~tgk~v~~~~h~~~I~slafsPdG~--~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
|+.+++...+-.|.++|.++.|-+... .|++|+.|.+|++||.|.. .++..+. ..+.++++..-
T Consensus 100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~---LPeRvYa~Dv~---------- 165 (347)
T KOG0647|consen 100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ---LPERVYAADVL---------- 165 (347)
T ss_pred EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee---ccceeeehhcc----------
Confidence 999998888878999999999998655 8999999999999999977 4555555 34556665542
Q ss_pred cCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 187 TCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 187 ~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
..+++.+..++.|.+|++..
T Consensus 166 ----~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 166 ----YPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred ----CceeEEEecCCcEEEEEcCC
Confidence 23445555599999999864
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=154.39 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=149.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc-----eeE-EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGA-----KAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--- 71 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~-----~i~-~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--- 71 (648)
+|+.||++|++++.|+.|+||++++-. +++ .+. -+--+.|.|.||-+.+++++....++++|.+...+
T Consensus 93 ~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~ 169 (420)
T KOG2096|consen 93 AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS 169 (420)
T ss_pred EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence 699999999999999999999997632 121 122 12345689999999888998888999999873221
Q ss_pred ce--------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEc
Q 006360 72 PK--------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 72 ~~--------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~ 142 (648)
.. ++.-+.|...|..+-..-.+++|++++.|..|.|||++ |+.+..+. .....+..+.+|+|++|++++.
T Consensus 170 ~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 170 GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC
Confidence 11 22334566777788887789999999999999999999 78777764 4455677889999999999999
Q ss_pred CCeEEEEECCC-----CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 143 NGRVVFYDIRG-----KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 143 DG~V~IWDl~s-----~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
--.|++|.+-- .....+++...+|...|..++|+++. ..+++.+.||++++||+.
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S------------~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS------------TRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc------------ceeEEEecCCcEEEeecc
Confidence 88899998842 12234555566999999999999954 445666789999999876
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.67 E-value=1.4e-14 Score=149.38 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=142.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
++.+++++.|+.|++||+.+++.+..+..+ . .+..++|+++++.++++++.++.|++||..+++. +..+..+.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-Q-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-C-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCC-cc
Confidence 457889999999999999999988888753 2 3567999999985557778899999999988764 344444433 57
Q ss_pred EEEEccCCCEEEEE-eCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC-eEEEEECCCCCCceEEEee
Q 006360 86 GISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQPLTVLRA 163 (648)
Q Consensus 86 slafsPdg~~LaSg-s~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG-~V~IWDl~s~~~~~~~l~~ 163 (648)
.++|+|+++.++++ ..|+.|++||+++++.+..+.+...+.+++|+|+|.+++++..++ .+++||..+... ...+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~- 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL- 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-
Confidence 78999999877654 568999999999988777776666678999999999999988775 477889887632 22221
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
....+.+++|++++++++. ++..++.|++||+.....
T Consensus 155 --~~~~~~~~~~s~dg~~l~~-----------~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 155 --VDQRPRFAEFTADGKELWV-----------SSEIGGTVSVIDVATRKV 191 (300)
T ss_pred --cCCCccEEEECCCCCEEEE-----------EcCCCCEEEEEEcCccee
Confidence 2344677899997665533 334578899999976544
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.67 E-value=6e-15 Score=146.80 Aligned_cols=178 Identities=15% Similarity=0.199 Sum_probs=149.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEE----eCCCeEEEEECC-------CCC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA----GDDGTLHLWDTT-------GRS 71 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSg----s~Dg~V~IWDl~-------t~~ 71 (648)
+.+.+++++|+.|.++++||+++|+++..++ ....|..+.|+.+|..++++. +..+.|.++|++ ..+
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 3466789999999999999999999999988 567889999999998444432 345779999996 333
Q ss_pred ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 006360 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (648)
Q Consensus 72 ~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~--~h~~~I~slafsPdG~~Lasgs~DG~V~IW 149 (648)
+ +..+..+...++..-|.|-+.+|++|..||.|.+||+++|+.+... .|...|+.+++++|..++++++.|.+-++|
T Consensus 139 p-~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 139 P-YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred c-eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 3 5667778899999999999999999999999999999998654433 488899999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
|.++. .+++.+....+|.+.+++|...+++.++.
T Consensus 218 D~~tl----~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 218 DVRTL----EVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred eccce----eeEEEeeecccccceecccccceEEecCC
Confidence 99987 44555567899999999998777777643
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.7e-15 Score=157.94 Aligned_cols=194 Identities=13% Similarity=0.161 Sum_probs=149.0
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~s 86 (648)
+.||+|+.|.+|++||+.++++...+. +|+..|.++.|++....+|++|+.|++|.++|++..... ...-...+.|-.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-~~~wk~~g~VEk 334 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-GKEWKFDGEVEK 334 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-CceEEeccceEE
Confidence 578999999999999999999999888 689999999999998889999999999999999853321 111233567999
Q ss_pred EEEcc-CCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006360 87 ISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (648)
Q Consensus 87 lafsP-dg~~LaSgs~Dg~I~IWDl~tg-k~v~~~-~h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~~~~~~~l~ 162 (648)
++|.| ....++++..||+|+.+|+|.. +++..+ .|.+.|.+++++.. -.++++++.|+.|++|++..... ..+..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-ccccc
Confidence 99999 6778888999999999999975 777666 59999999999985 56788999999999999986422 11111
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 163 ~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
..-.-+...|.++.|+-.+ +++.|+..+.++|||+....+.
T Consensus 414 ~~~~~~rl~c~~~~~~~a~-----------~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAF-----------TLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCCcce-----------EEEecCccceEEEeecccChhH
Confidence 0011234566677765332 3344444668999999876553
No 120
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.4e-16 Score=183.09 Aligned_cols=200 Identities=20% Similarity=0.292 Sum_probs=155.9
Q ss_pred CccCCCCE----EEEEECCCcEEEEECCC---Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006360 1 MYNCKDEH----LASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 1 AFSpdG~~----Lasgs~DG~V~IwDl~s---g~---~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
+|.+.|.. ||.|..||.|.+||... +. .+..+.. |.+.|..++|++...++|++|+.||.|+|||+...
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~ 149 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP 149 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence 46666654 88889999999999864 22 3334444 67788889999999889999999999999999775
Q ss_pred CceeEE-eccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEeeCC---CCeEEEEEeCCC-CEEEEEEcCC
Q 006360 71 SPKVSW-LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDD-WILTAGTSNG 144 (648)
Q Consensus 71 ~~~v~~-l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~---~~I~slafsPdG-~~Lasgs~DG 144 (648)
+..... -....+.|.+++|+. ..++|++++.+|.+.|||++..+.+..+... ..+..+.|+|++ ..|+++++|.
T Consensus 150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd 229 (1049)
T KOG0307|consen 150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD 229 (1049)
T ss_pred CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence 533322 122457899999998 6788999999999999999998776655422 348899999975 4566666654
Q ss_pred ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 145 ---~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
.|.+||+|....+++++. +|...|.++.|++. |..++++++.|+.|.+|+.....-.
T Consensus 230 ~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~-----------D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQ-----------DPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred CCceeEeecccccCCchhhhc--ccccceeeeccCCC-----------CchhhhcccCCCCeeEecCCCceEe
Confidence 499999999888888886 89999999999985 5566777788999999998864433
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.66 E-value=1.2e-16 Score=157.52 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=163.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~ 82 (648)
+.|..+-++++.|-+.+|||.-+|..+..+. |...|..++|+.|.+ .|++|+.++.++|||++..+.....+.+|.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 4455567788899999999999999999887 788999999999988 7999999999999999887766778899999
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 006360 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~ 162 (648)
.|..+.|....+.|++...|++|++||.+++..++.+....+|+++.+++||.+|.++. .+.|.+||..+.. .++
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~----~lK 219 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG----LLK 219 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecccccc----cee
Confidence 99999999988899999999999999999999999999999999999999999877665 4669999999873 333
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 163 ~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
.+.-...|.+..++|+ ..++|+|..|..++.||...-.....
T Consensus 220 s~k~P~nV~SASL~P~------------k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 220 SYKMPCNVESASLHPK------------KEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred eccCccccccccccCC------------CceEEecCcceEEEEEeccCCceeee
Confidence 3334567888899995 35566667788999998876554443
No 122
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=3.5e-15 Score=154.93 Aligned_cols=198 Identities=19% Similarity=0.262 Sum_probs=154.2
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006360 1 MYNCK-DEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (648)
Q Consensus 1 AFSpd-G~~Lasgs~DG~V~IwDl~sg~-------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~ 72 (648)
+|+|. ++.||+|+.|.+|.||++..+. .+..+.+ |...|..|+|+|...++|++++.|.+|.|||+.+++.
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea 166 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA 166 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence 47774 5688999999999999986543 4556776 7778889999999999999999999999999999986
Q ss_pred eeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCC-CeEEEEEeCCCCEEEEEE---cCCeEE
Q 006360 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGT---SNGRVV 147 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~-~I~slafsPdG~~Lasgs---~DG~V~ 147 (648)
.+ .+. |.+.|++++|+-||.+|++.+.|+.|+|||.++++.+..- .|.+ .-..+.|-.+|.++.+|- .+..+-
T Consensus 167 li-~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 167 LI-TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred ee-ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccccee
Confidence 44 344 9999999999999999999999999999999999988776 4544 355677878888555554 367899
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 148 IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
+||..+...++..... .....|.---|++ +...++++|-.|+.|++|.+....+
T Consensus 245 Lwdp~nl~eP~~~~el-DtSnGvl~PFyD~-----------dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 245 LWDPNNLEEPIALQEL-DTSNGVLLPFYDP-----------DTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccCcccccCcceeEEe-ccCCceEEeeecC-----------CCCEEEEEecCCcceEEEEecCCCc
Confidence 9999987666433332 2233343333444 3566777788899999999876654
No 123
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.4e-15 Score=148.58 Aligned_cols=178 Identities=18% Similarity=0.235 Sum_probs=138.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEec--
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK-- 78 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~~l~-- 78 (648)
.+|-++.+++++.|++|++||++..++...+... ... .++|.|.|- ++|++.....|+|||++.-. .....+.
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~p--i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRP--IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCc--ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 3688899999999999999999988887766642 223 368999997 77777777799999996531 1122222
Q ss_pred -cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-C--CC-CeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-Y--EA-PFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 79 -~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h--~~-~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
......+.+.|+|||++|+.+...+.+++.|.-+|.....+. + .. --...+|.||+++|++|+.||+|++|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 345678999999999999999999999999999998777663 2 12 225778999999999999999999999988
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 154 ~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+. .+..+... +.+++.++.|+|....++++
T Consensus 264 g~-~v~~~~~~-~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 264 GK-KVAVLRGP-NGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred Cc-EeeEecCC-CCCCccccccCCceeeeeec
Confidence 84 34444422 78999999999965555554
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=2.9e-14 Score=146.99 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=141.2
Q ss_pred CccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~L-asgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
+|+|+|+.+ ++++.++.|++||..+++.+..+..+ .. +..++|+++++.+++++..|+.|++||+.+... +..+.
T Consensus 37 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~- 112 (300)
T TIGR03866 37 TLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP- 112 (300)
T ss_pred EECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-
Confidence 478999876 56678899999999988887777642 22 456899999985556667789999999987653 33333
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEE-cCCeEEEEECCCCCCc
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP 157 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg-~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs-~DG~V~IWDl~s~~~~ 157 (648)
+...+.+++|+|++.+++++..++ .+++||..+++....+.....+.+++|+++|.+|++++ .++.|++||+.+.+ .
T Consensus 113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~ 191 (300)
T TIGR03866 113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-V 191 (300)
T ss_pred CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-e
Confidence 334578899999999999988875 57788999887766555555678899999999886554 58999999999863 2
Q ss_pred eEEEeecC---C--CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 158 LTVLRACS---S--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 158 ~~~l~~~~---h--~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
...+.... + ......++|+|++++++.. ...++.|.+||+....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-----------~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-----------LGPANRVAVVDAKTYE 240 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEE-----------cCCCCeEEEEECCCCc
Confidence 33332111 1 1123468889887764332 2335678999886543
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.4e-15 Score=148.06 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=146.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCC--CceeEEecc
Q 006360 5 KDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGR--SPKVSWLKQ 79 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i--~~l~~~~~~~V~~Vafspdg-~~lLaSgs~Dg~V~IWDl~t~--~~~v~~l~~ 79 (648)
-|.+||+++.||+|.||.-.+++-. .++. .|...|++|+|.|.+ ..+|++++.||.|.|.+++.. ....+....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 5899999999999999998766422 2333 377889999999864 337788999999999998654 222355678
Q ss_pred CCCCeEEEEEccC---C-----------CEEEEEeCCCeEEEEeCCCCcee--e-EeeCCCCeEEEEEeCC----CCEEE
Q 006360 80 HSAPTAGISFSSD---D-----------KIIASVGLDKKLYTYDPGSRRPS--S-CITYEAPFSSLAFIDD----DWILT 138 (648)
Q Consensus 80 H~~~V~slafsPd---g-----------~~LaSgs~Dg~I~IWDl~tgk~v--~-~~~h~~~I~slafsPd----G~~La 138 (648)
|.-.|++++|.|. | +.|++|+.|..|+||+...+.-+ . .-+|...|+.++|.|. -.+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999999984 4 67999999999999999886422 2 2369999999999995 35799
Q ss_pred EEEcCCeEEEEECCCCCCc--eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 139 AGTSNGRVVFYDIRGKPQP--LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 139 sgs~DG~V~IWDl~s~~~~--~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
+++.||+|.||..+....+ ..++. .....+..+.|+..|++|+..+ .|+.|.+|.-
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~--~f~~~~w~vSWS~sGn~LaVs~------------GdNkvtlwke 285 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLE--EFPDVVWRVSWSLSGNILAVSG------------GDNKVTLWKE 285 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccc--cCCcceEEEEEeccccEEEEec------------CCcEEEEEEe
Confidence 9999999999988743222 23333 4567899999999888887763 3677777743
No 126
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=2.6e-15 Score=162.68 Aligned_cols=181 Identities=17% Similarity=0.275 Sum_probs=141.8
Q ss_pred ccCCCCEEEE--EECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 006360 2 YNCKDEHLAS--ISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--- 71 (648)
Q Consensus 2 FSpdG~~Las--gs~DG~V~IwDl~sg~~-----i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--- 71 (648)
|..+..++|+ .+..|.|.||+++.-.. +-.+. ++..|.++.|.|-+...|+.+++||.|+||.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 4455566654 45578999999975332 22333 467899999999777789999999999999985432
Q ss_pred ---ceeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeE-eeCCCCeEEEEEeCCCCEEEEEEcCCeE
Q 006360 72 ---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRV 146 (648)
Q Consensus 72 ---~~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~-~~h~~~I~slafsPdG~~Lasgs~DG~V 146 (648)
.....+..|...|+.+.|+| -...|++++.|-+|++||+++++.... .+|.+.|..++|+|||+.+++.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 22457889999999999999 778999999999999999999886644 4899999999999999999999999999
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 147 ~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+||+.+...+++..-.... ...-..|.|.-+|+++++.
T Consensus 745 rVy~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVV 782 (1012)
T ss_pred EEeCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEe
Confidence 9999999877665443221 1334457777777776664
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.3e-15 Score=151.52 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=137.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---CCCC----ceeEEe
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT---TGRS----PKVSWL 77 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl---~t~~----~~v~~l 77 (648)
++.+|++++.|..|.+|+++ |+.+..+.. +...-+..+.+|+|+ +|++++..-.|++|.+ +.+. ..+..+
T Consensus 198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 46799999999999999996 998888875 333345578999999 8889999899999997 2221 225578
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-------CceeeEe-----eCCCCeEEEEEeCCCCEEEEEEcCCe
Q 006360 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-------RRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGR 145 (648)
Q Consensus 78 ~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t-------gk~v~~~-----~h~~~I~slafsPdG~~Lasgs~DG~ 145 (648)
++|...|..++|+++...+++++.||+++|||+.- .+.++.. ...+....+.++|.|..|+.... ..
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~ 353 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SD 353 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-Cc
Confidence 99999999999999999999999999999999853 2222222 12334458999999998887654 46
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 146 V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
|++|..+.++.. ..+. ..|...|.+|+|+++|+|++++|.
T Consensus 354 l~~~~se~g~~~-~~~e-~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 354 LKVFASEDGKDY-PELE-DIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred eEEEEcccCccc-hhHH-HhhcCceeeEEecCCCcEEeeecc
Confidence 999998876432 2222 168999999999999999999843
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.63 E-value=3.4e-15 Score=164.02 Aligned_cols=179 Identities=15% Similarity=0.216 Sum_probs=148.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V 84 (648)
++-+|++|+.|.+|.+|.+.....+..+++ |...|.++....++. +++|++|.++++|-...- ...+.+|...|
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l---~~~l~gH~asV 143 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL---VYSLQGHTASV 143 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc--eEecccccceEEecchhh---hcccCCcchhe
Confidence 445688999999999999999999999997 667777777666654 899999999999987543 34589999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 006360 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (648)
Q Consensus 85 ~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~ 163 (648)
+++.+.|++ .+++|+.|++|++|.- ++.++++ +|..-|..+++-+++ .+++++.||.|++|++... .++..
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge----~l~~~ 215 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE----VLLEM 215 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc----eeeee
Confidence 999999977 8899999999999985 5666666 699999999998875 5778999999999999654 45666
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
++|..-|+++....+ ..++++++.|++++||+..
T Consensus 216 ~ghtn~vYsis~~~~------------~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 216 HGHTNFVYSISMALS------------DGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eccceEEEEEEecCC------------CCeEEEecCCceEEEeecC
Confidence 699999999996653 3455666778888888776
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.6e-14 Score=144.65 Aligned_cols=199 Identities=11% Similarity=0.214 Sum_probs=148.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC----ceeEEEeCCCCCcEEEEEEcc-C-CCeEEEEEeCCCeEEEEECCCC--C-
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSR-N-SRHLLVTAGDDGTLHLWDTTGR--S- 71 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg----~~i~~l~~~~~~~V~~Vafsp-d-g~~lLaSgs~Dg~V~IWDl~t~--~- 71 (648)
.|++.|+++|+++.|++|+|||..+. .+....+. |.+.|..|.|.+ . |+ ++++|+.|++|.||.-... +
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccc-eEEEEecCCceeeeeeccccccc
Confidence 37889999999999999999996543 34455665 555566677754 3 55 9999999999999976211 1
Q ss_pred -----ceeEEeccCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCc------eeeEe--------eCCCCeEEEEE
Q 006360 72 -----PKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRR------PSSCI--------TYEAPFSSLAF 130 (648)
Q Consensus 72 -----~~v~~l~~H~~~V~slafsP--dg~~LaSgs~Dg~I~IWDl~tgk------~v~~~--------~h~~~I~slaf 130 (648)
.....+......|++|+|.| -|-.+++++.||+|+||+.-..- ....+ .+..+..|+.|
T Consensus 98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 22456667788999999999 67889999999999999875432 11222 26678899999
Q ss_pred eCC---CCEEEEEEcC-----CeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006360 131 IDD---DWILTAGTSN-----GRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (648)
Q Consensus 131 sPd---G~~Lasgs~D-----G~V~IWDl~s~~-~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~ 201 (648)
+|. ..+|++|+.+ +.++||...... +..++-...+|..+|++|+|.|+ ......++..++.||
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn--------~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN--------IGRSYHLLAVATKDG 249 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--------cCCceeeEEEeecCc
Confidence 983 5678888876 479999877543 44455555699999999999996 233445666777788
Q ss_pred eEEcCCCCC
Q 006360 202 SILMPDPLP 210 (648)
Q Consensus 202 ~IkvWDlr~ 210 (648)
|+||.+..
T Consensus 250 -v~I~~v~~ 257 (361)
T KOG2445|consen 250 -VRIFKVKV 257 (361)
T ss_pred -EEEEEEee
Confidence 99999874
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.62 E-value=8.4e-15 Score=160.92 Aligned_cols=176 Identities=13% Similarity=0.113 Sum_probs=141.6
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006360 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~sl 87 (648)
.|++|++|.+++||-. +++...+++ |...|.++++.|++ .++||+.|++|++|.-.+ .++.+.+|.+.|..+
T Consensus 114 ~~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~---~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSADKTIKLWKGGT---LLKTFSGHTDCVRGL 185 (745)
T ss_pred ceEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccCcceeeeccCCc---hhhhhccchhheeee
Confidence 3899999999999974 666667776 77788889988877 599999999999998732 367899999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC
Q 006360 88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167 (648)
Q Consensus 88 afsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~ 167 (648)
++-++ ..|++|++||.|++||+.........+|...|.++....++..|+++++|++++||+.. .+.+.+.. ..
T Consensus 186 ~vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~l--Pt 259 (745)
T KOG0301|consen 186 AVLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITL--PT 259 (745)
T ss_pred EEecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEEec--Cc
Confidence 99865 45889999999999999554555666899999999988888899999999999999988 33455552 23
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 168 ~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
-.|+++++-++|..+ + ++.||.|+||-..+
T Consensus 260 tsiWsa~~L~NgDIv------------v-g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 260 TSIWSAKVLLNGDIV------------V-GGSDGRVRVFTVDK 289 (745)
T ss_pred cceEEEEEeeCCCEE------------E-eccCceEEEEEecc
Confidence 478888887755443 3 33489999986654
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.62 E-value=9.3e-15 Score=159.28 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=116.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~--l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~------ 73 (648)
|-|-...|++++.|.++++||++..+++.. +.+ |...|..+||.+.+..+|++|+.||.|.|||++.....
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 566445789999999999999999888766 555 78889999999999999999999999999998533200
Q ss_pred --------------------eEEeccCCCCeEE---EEEccCCCEEEEEeC-CCeEEEEeCCCCceeeEe---------e
Q 006360 74 --------------------VSWLKQHSAPTAG---ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---------T 120 (648)
Q Consensus 74 --------------------v~~l~~H~~~V~s---lafsPdg~~LaSgs~-Dg~I~IWDl~tgk~v~~~---------~ 120 (648)
+...+.|...|.. +.+..|...|++++. |+.|++||++........ .
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t 266 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT 266 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence 1122234444555 555568889999888 999999999876543221 1
Q ss_pred C---CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 121 Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 121 h---~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
+ ...+.++..+..|.+|++.+.|+.|++||+...
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 2 335777888778999999999999999999864
No 132
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=5.2e-15 Score=153.70 Aligned_cols=169 Identities=13% Similarity=0.176 Sum_probs=139.4
Q ss_pred CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEE
Q 006360 34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLY 106 (648)
Q Consensus 34 ~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~------~~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~ 106 (648)
+.|...|-.++|+|.+.+.|++|++|.+|.||++..+. ..+..+.+|...|.-|.|+| -.+.|++++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 35788889999999988899999999999999994332 22678899999999999999 778999999999999
Q ss_pred EEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEe
Q 006360 107 TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDE 185 (648)
Q Consensus 107 IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~-VtsLafspdg~~Las~ 185 (648)
+||+.+|+.+..+.|...|.++.|+-||.+|++.+.|..|+|||.+.++ .+..- .+|.+. -..+.|-.+|.++.++
T Consensus 158 iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~--~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 158 IWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEG--VAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeeec--ccccCCCcceeEEeccCceeeec
Confidence 9999999988888899999999999999999999999999999999984 22222 355543 3456677777755454
Q ss_pred ccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 186 TTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 186 ~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
++-..++.+-+||......+
T Consensus 235 ---------fsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 235 ---------FSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred ---------cccccccceeccCcccccCc
Confidence 34445899999999866554
No 133
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.61 E-value=1e-14 Score=144.74 Aligned_cols=171 Identities=14% Similarity=0.202 Sum_probs=137.2
Q ss_pred EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEE
Q 006360 31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTY 108 (648)
Q Consensus 31 ~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~-~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IW 108 (648)
++++ |...|+.|+|+-+|. .+++|+.|+++.+|++..... +-...++|.+.|-.++|+| +...+++++.|++|++|
T Consensus 15 ~~~~-~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQG-HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred Hhhh-hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 3444 667789999999998 899999999999999966542 1234578999999999999 78899999999999999
Q ss_pred eCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC-----------------------------ceE
Q 006360 109 DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-----------------------------PLT 159 (648)
Q Consensus 109 Dl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~-----------------------------~~~ 159 (648)
|++.++++..+...+.-.-+.|+|+|++++++..|..|.+.|.++.+. .+.
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 999999999887777777799999999999999999999999875321 111
Q ss_pred EEee---------cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcc
Q 006360 160 VLRA---------CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (648)
Q Consensus 160 ~l~~---------~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~s 215 (648)
++.. ..|.....||.|+|+|+|+|++ +.|..+-+||+.-..+..
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G------------sADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG------------SADALVSLWDVDELICER 225 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeec------------cccceeeccChhHhhhhe
Confidence 1111 1577777888888887777776 559999999998666543
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=162.49 Aligned_cols=174 Identities=16% Similarity=0.241 Sum_probs=145.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~- 79 (648)
+|+-+|+++|.|+.|-.|++.++.+......+.+ |...|.+|.|+|+++ +||+.+.||.|+|||++.+... +.+.+
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~-~tl~~v 179 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILS-KTLTGV 179 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhh-hhcccC
Confidence 5788999999999999999999999988888887 778899999999998 8999999999999999877632 22221
Q ss_pred -------CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 006360 80 -------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (648)
Q Consensus 80 -------H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---h~~~I~slafsPdG~~Lasgs~DG~V~IW 149 (648)
....+..++|+|++..++....|+.|++|+..+......+. +...+.++.|+|+|.|||+++-||.|.||
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW 259 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence 13456789999998889999999999999999888766652 44459999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las 184 (648)
|..+... +.....|++++|.|+.+.+-.
T Consensus 260 nv~t~~~-------~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 260 NVDTHER-------HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred ecccchh-------ccccceeEEEecCCCCCeeEE
Confidence 9997321 244578999999998765543
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.6e-14 Score=145.00 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=143.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
||+.|.+||+|+.||.|.|||+.+....+.+.+ |-.+|.+++|+++|+ +|++++.|..|.+||+..+.+ ++.+ ...
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~-l~ri-rf~ 106 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSP-LKRI-RFD 106 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCC-EeeeecCCceeEEEeccCCCc-eeEE-Ecc
Confidence 899999999999999999999988776666654 778999999999999 899999999999999988874 3333 456
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe-e----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-T----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 82 ~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
.+|+.+.|+| +.+.++.+-.+..-.+.++..++....- . ......+..|.+.|++|++|...|.+.+||..+.
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~- 185 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL- 185 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-
Confidence 7899999999 5555555555665666676653322111 1 1122334568899999999999999999999987
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
+++..++. .....|..+.|+..|++++. .+.|+.|+.|++..
T Consensus 186 e~vas~ri-ts~~~IK~I~~s~~g~~lii------------NtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 186 ECVASFRI-TSVQAIKQIIVSRKGRFLII------------NTSDRVIRTYEISD 227 (405)
T ss_pred eeeeeeee-chheeeeEEEEeccCcEEEE------------ecCCceEEEEehhh
Confidence 33444442 12367888888876655544 35699999998873
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=161.39 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=151.0
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~--~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
++=|++.+.|...|+|-+||+.+|-....+- ..|...|+.++....++ ++++++.+|.+++||+..... +..+. -
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l-~~~l~-l 533 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL-KKSLR-L 533 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce-eeeec-c
Confidence 4458888899999999999999998888872 34788999999887777 899999999999999988763 23332 3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
...+.++.++.....++.+..|-.|+++|+.+.+.++.+ +|.+.|++++|+|||++|++++.|++|++||+.++ .
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----~ 609 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----T 609 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----c
Confidence 346788888888889999999999999999999999887 59999999999999999999999999999999998 3
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
.+....-..+++++.|+|+|.+||+...
T Consensus 610 lID~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 610 LIDGLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred eeeeEecCCcceeeEECCCCCEEEEEEe
Confidence 3443446789999999999999888743
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=147.13 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=150.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC----CCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeEE
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVSW 76 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~----~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl-~t~~-~~v~~ 76 (648)
-|+-+++++.+.+.-|++||..+|+..+.+.+.. -....+++|+|||. .|++ +....|+|||+ +.++ +.+..
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchh
Confidence 3677889999999999999999999888776532 12346799999999 4554 57799999999 4332 22222
Q ss_pred ec-----cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEc-CCeEEE
Q 006360 77 LK-----QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS-NGRVVF 148 (648)
Q Consensus 77 l~-----~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~-DG~V~I 148 (648)
.. +..+.|.|++|+| +.+.+++++....+-||.-..+.++.++ +|.+.|+.++|.+||+.|++|.. |..|.+
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 22 3367899999999 7789999999999999988888887776 69999999999999999999986 677999
Q ss_pred EECCCCCCceEEEeecCCCC-CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 149 YDIRGKPQPLTVLRACSSSE-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 149 WDl~s~~~~~~~l~~~~h~~-~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
||+|....++..+. .|.+ .-..|-|.- ...+.+|++|+.||.|++||+..+..
T Consensus 278 WDiR~~~~pv~~L~--rhv~~TNQRI~FDl----------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 278 WDIRYSRDPVYALE--RHVGDTNQRILFDL----------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred Eeehhccchhhhhh--hhccCccceEEEec----------CCCCceeeccCCCccEEEEecCCCCC
Confidence 99998877666555 4443 333344432 23455666667899999999987655
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.8e-14 Score=149.84 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=153.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce---eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWL 77 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~---i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~~l 77 (648)
|+|....|++++.||.++||.+ +|+. +..+.- ...+|.+.+|.|+|...+++++....++.||+.+.+ .++...
T Consensus 221 FHp~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEe-cCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 8899999999999999999998 4543 333332 467889999999998789999999999999997765 224444
Q ss_pred ccCC-CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC
Q 006360 78 KQHS-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 78 ~~H~-~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
.++. ..+..+.+++++++|+..+..|.|.+....+++.+..+...+.|..++|+.|++.|++++.+|.|++||++.. .
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~ 377 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-S 377 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-c
Confidence 5554 3467888999999999999999999999999999999999999999999999999999999999999999988 3
Q ss_pred ceEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 157 PLTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 157 ~~~~l~~~~h~~~V--tsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
++..+. ..+.| +++|.+++|.|+|++ +..|.|.|||...
T Consensus 378 ~~~rf~---D~G~v~gts~~~S~ng~ylA~G------------S~~GiVNIYd~~s 418 (514)
T KOG2055|consen 378 CLHRFV---DDGSVHGTSLCISLNGSYLATG------------SDSGIVNIYDGNS 418 (514)
T ss_pred eEEEEe---ecCccceeeeeecCCCceEEec------------cCcceEEEeccch
Confidence 333333 34444 456666766665555 6688899998653
No 139
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2e-14 Score=147.25 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=151.3
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCce-eEEeccCC-CC
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHS-AP 83 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd-g~~lLaSgs~Dg~V~IWDl~t~~~~-v~~l~~H~-~~ 83 (648)
..+|++...|.|++||..+++.+..+++ +...++.++|..+ +.+.+.+|+.||+|++||++..... ......|. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 4688888999999999999999999997 6667788888764 6668999999999999999765432 33344555 56
Q ss_pred eEEEEEccCCCEEEEEeC----CCeEEEEeCCCCce-eeEe--eCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCC
Q 006360 84 TAGISFSSDDKIIASVGL----DKKLYTYDPGSRRP-SSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~----Dg~I~IWDl~tgk~-v~~~--~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
..|++.+..+++|++|.. |-.|.+||+|..+. +..+ .|...|++++|+| +.++|++|+.||.|.|||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 677887778888888754 55899999998765 5554 5999999999999 57899999999999999998754
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
..-..+....|...|.++.|..++ ...+++-+......+|++..-.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~-----------ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKK-----------YKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCC-----------cceEEEEEccCceeEEEccCCCh
Confidence 433444445688889999998754 12244445578888898876553
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=151.58 Aligned_cols=195 Identities=16% Similarity=0.292 Sum_probs=155.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC-ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg-~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
||+.+.+.||.+-.||.|.||++..+ -+...+.++....|..++|.+.++ |++.+.+|.|.-||+.+.+. ...+..
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~-~~~~d~ 108 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQ-KYNIDS 108 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEecccCce-eEEecC
Confidence 68889999999999999999999764 344567777788999999996665 88889999999999988875 456777
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe---eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~---~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
..+.|++++.+|.+..++.|+.||.+++++...++..... ..++.|.++.|+|++..|+.|+.||.|++||...+..
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 7889999999999999999999998888888887765433 3568999999999999999999999999999998743
Q ss_pred ceEEEee--cC----CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 157 PLTVLRA--CS----SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 157 ~~~~l~~--~~----h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
.. .... .. ..-.|++|.|-.+ ..++++..-|.|++||.....
T Consensus 189 ~~-~~~~~~d~l~k~~~~iVWSv~~Lrd-------------~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 189 LH-IITMQLDRLSKREPTIVWSVLFLRD-------------STIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EE-EeeecccccccCCceEEEEEEEeec-------------CcEEEecCCceEEEEcccCcc
Confidence 32 1111 11 2233566666543 356777778999999987543
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=2.1e-14 Score=146.38 Aligned_cols=189 Identities=19% Similarity=0.285 Sum_probs=145.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE---eccCCCC
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW---LKQHSAP 83 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~---l~~H~~~ 83 (648)
-++|.|+.-|.|+|.|+.++++...+.+ |+..|+.++|.|+..+++++++.|..|++|++++..+. .. ..+|.+.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrde 183 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDE 183 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCc
Confidence 4788899999999999999999999987 88999999999999889999999999999999998763 33 3579999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCce------e-------------------eEe----eC-------------
Q 006360 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------S-------------------SCI----TY------------- 121 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~------v-------------------~~~----~h------------- 121 (648)
|.++.|++++.+|++|+.|..|++|++...+. . -.+ -|
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ 263 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF 263 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence 99999999999999999999999999862110 0 000 00
Q ss_pred ------C-----------------------------------CCeEEE--EEeCCCCEEEEEEcCCeEEEEECCCCCCc-
Q 006360 122 ------E-----------------------------------APFSSL--AFIDDDWILTAGTSNGRVVFYDIRGKPQP- 157 (648)
Q Consensus 122 ------~-----------------------------------~~I~sl--afsPdG~~Lasgs~DG~V~IWDl~s~~~~- 157 (648)
+ ..|+.+ +|++.+++||.|...|.|++||++....+
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 0 112223 34455778999999999999999986542
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 158 ~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
...+........|...+|+.||.+| +....|+.|.-||..
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~l------------v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSIL------------VLVCDDGTVWRWDRV 383 (385)
T ss_pred CceEEeccccceeeeeeecccCcEE------------EEEeCCCcEEEEEee
Confidence 2233322345678889998865554 444568999999864
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=151.29 Aligned_cols=190 Identities=15% Similarity=0.222 Sum_probs=149.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
.++++++|+..+..|.|+|....+++.+..++ -.+.|..++|+.+++ .|++++.+|.|++||++...+..++.....
T Consensus 311 VShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 311 VSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred ecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence 47899999999999999999999999999888 467899999999998 566667789999999998875433333333
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCC------CceeeEe-eCCCCeEEEEEeCCCCEEEEEEc--CCeEEEEECC
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGS------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIR 152 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t------gk~v~~~-~h~~~I~slafsPdG~~Lasgs~--DG~V~IWDl~ 152 (648)
-.-+.+|.++++.+||+|+..|.|.|||..+ .+++..+ .....|+.+.|++|.++|+.++. +..+++..+.
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 3346677788999999999999999999653 2444444 45678999999999999998875 5668888887
Q ss_pred CCCCceEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 153 GKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 153 s~~~~~~~l~~~----~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
+. .++..+ ..-+.|+|++|+|.+-|+|.+ ..++.+.+|.+.-
T Consensus 468 S~----TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvG------------Ne~grv~l~kL~h 513 (514)
T KOG2055|consen 468 SC----TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVG------------NEAGRVHLFKLHH 513 (514)
T ss_pred ce----eeeccCCCCCCcccceEEEEecCCCceEEee------------cCCCceeeEeecc
Confidence 65 333322 334679999999988777776 4588899987753
No 143
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.9e-14 Score=150.96 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=149.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--c
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--K 78 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l--~ 78 (648)
||+.+|..|++|+.||+++||++.+...+..... |...|.++.|+||++ +|++-+.| ..+|||+.++.. +... .
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~-~a~~t~~ 226 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAA-LARKTPF 226 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCc-EEEEecCC-ceEEEEeccCch-hhhcCCc
Confidence 6899999999999999999999888887777765 566789999999998 88888888 999999988853 2222 2
Q ss_pred cCCCCeEEEEEccCC-----CEEEEEeCCCeEEEEeCCCC------ceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEE
Q 006360 79 QHSAPTAGISFSSDD-----KIIASVGLDKKLYTYDPGSR------RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVV 147 (648)
Q Consensus 79 ~H~~~V~slafsPdg-----~~LaSgs~Dg~I~IWDl~tg------k~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~ 147 (648)
........+.|+.|+ .+++....-+.|+.||+... +..+.+.....|.+++.++||++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 333456677887766 33333344456777666432 1122223566899999999999999999999999
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 148 IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
||+...... ++.+. ..|...|+.|.|+|+.++++.. ..+.+..++.-..|.++++..+
T Consensus 307 i~~~~~lq~-~~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l~vd~~~~~~~~ 364 (398)
T KOG0771|consen 307 IYDAKSLQR-LQYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKLAVDKTMQLHRL 364 (398)
T ss_pred EEEeceeee-eEeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEEEEeeccccccccc
Confidence 999988733 22222 3799999999999999999885 3445555666666666655443
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.58 E-value=1.3e-14 Score=154.28 Aligned_cols=188 Identities=12% Similarity=0.075 Sum_probs=156.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|.|||.++.+++..||.|.|||+.+...++.|++ |.+.+.||.+++||. .|.+|+-|++|+.||++++... .-...
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGt-klWTGGlDntvRcWDlregrql--qqhdF 591 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQL--QQHDF 591 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhh--hhhhh
Confidence 4689999999999999999999999999999998 667789999999998 7999999999999999887632 22345
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
...|.++.++|++.+++.|-..+.+.+......+..++..|+.-|.++.|.+.|+++++.+.|+.+-.|...-+...++.
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 67899999999999999999999999998877776677779999999999999999999999999999998876432222
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
.....|.++.++-|.+||++ |+.|.+..||.+
T Consensus 672 ----kE~SsVlsCDIS~ddkyIVT------------GSGdkkATVYeV 703 (705)
T KOG0639|consen 672 ----KESSSVLSCDISFDDKYIVT------------GSGDKKATVYEV 703 (705)
T ss_pred ----cccCcceeeeeccCceEEEe------------cCCCcceEEEEE
Confidence 34678898888876555555 455665555543
No 145
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.58 E-value=2.1e-14 Score=144.18 Aligned_cols=152 Identities=27% Similarity=0.408 Sum_probs=128.5
Q ss_pred CccC--CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 1 MYNC--KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 1 AFSp--dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+|+| ||+.+++. .|+++..||+++.++...+...|+..|+.+.|+|+.+++|++|++||.|+|||.+..+..+..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 4777 67777765 57899999999999999999889999999999999999999999999999999988877789999
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC------------------------------ceeeEeeCCCCeEE
Q 006360 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR------------------------------RPSSCITYEAPFSS 127 (648)
Q Consensus 79 ~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tg------------------------------k~v~~~~h~~~I~s 127 (648)
+|...|++|.|+| ...+|++++.|..|.+|....- .....-.|+..|++
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~ 335 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA 335 (370)
T ss_pred CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence 9999999999999 7788999999999999975211 11111248889999
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEECCC
Q 006360 128 LAFID-DDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 128 lafsP-dG~~Lasgs~DG~V~IWDl~s 153 (648)
++|+. |..++++-+.||.|.|=.+..
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCCh
Confidence 99987 566778889999999866543
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.58 E-value=2.2e-14 Score=151.52 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=151.1
Q ss_pred CccCCC--CEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-
Q 006360 1 MYNCKD--EHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK- 73 (648)
Q Consensus 1 AFSpdG--~~Lasgs~DG~V~IwDl~sg~----~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~- 73 (648)
+|+|.. +.+|+|+..|+|-+||+...+ .+..+ ..|...|.++.|+|.....|++.+.||+|++-|+++....
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 477765 478889999999999994221 22223 3588899999999988778999999999999999876421
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeEe-eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEE
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD 150 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~-v~~~-~h~~~I~slafsPd-G~~Lasgs~DG~V~IWD 150 (648)
+..+......+..+.|+.+...++.+..=|.+.+||++++.. ...+ -|...|..|+++|. ..+|++++.|++++|||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 223333445678888988888888888888999999998764 3222 37779999999994 67889999999999999
Q ss_pred CCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 151 IRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 151 l~s~~~~~-~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
++...... -.+....|...|.++.|+|++ +. +++.+.|..|+|||..
T Consensus 352 ~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----------gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 352 LRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----------GT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhhhcCCCCcceecccccceeeeeEEcCCC-----------Cc-eEeeccCCceEEeecc
Confidence 99632211 156667899999999999963 33 6666779999999984
No 147
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=3.6e-14 Score=152.26 Aligned_cols=171 Identities=17% Similarity=0.191 Sum_probs=131.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEE---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAEL---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------- 71 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l---~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--------- 71 (648)
+++--|++|-.-|.|.+.|....+..+.+ .......|+|++|-|.+..+|+.+..+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 34555667777788988887552221111 112457899999999888899999999999999763110
Q ss_pred ------ceeE------------EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeC
Q 006360 72 ------PKVS------------WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID 132 (648)
Q Consensus 72 ------~~v~------------~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsP 132 (648)
-.+. .+.-..+.|+.++|+|||++||+++.||.++|||..+.+.+..+ ...+...|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 0011 11122346889999999999999999999999999988877665 3678899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 133 dG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
||++|++|++|..|.||.+...+ .+-+.++|...|..|+|+|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence 99999999999999999998773 4455679999999999996
No 148
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.8e-13 Score=137.66 Aligned_cols=198 Identities=13% Similarity=0.163 Sum_probs=150.1
Q ss_pred EEEEEECCCcEEEEECCCCc------------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006360 8 HLASISLSGDLILHNLASGA------------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~------------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~ 75 (648)
.|++|+....|.-+++.... .+..+. .|...|++|+.+ +. ++++|+.|-+|+|||++.... +.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~q-lg 77 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQ-LG 77 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhh-hc
Confidence 36778888777777764221 122333 378889999986 55 899999999999999988764 66
Q ss_pred EeccCCCCeEEEEEccCCC--EEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 76 WLKQHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~--~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
.+..|.+.|+++.|.++-. +|++|+.||.|.+||...-.++..+ .|.+.|+.++.+|.|++-++.+.|+.+++||+-
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 7888999999999998554 8999999999999999998888777 588999999999999999999999999999997
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEec---------------------------cCCCCeEEEEeeCCCeEEc
Q 006360 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET---------------------------TCKAETALLGGAVGDSILM 205 (648)
Q Consensus 153 s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~---------------------------~~~~~~~lvs~s~D~~Ikv 205 (648)
.++.. .++. -....+.|.|+|.|.+++..+ .+.++..++.|..|+.|.+
T Consensus 158 ~Gr~a-~v~~---L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 158 RGRVA-FVLN---LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred cCccc-eeec---cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEE
Confidence 76432 2222 223344599999998655421 2234455666666777777
Q ss_pred CCCCCCCCc
Q 006360 206 PDPLPSVTT 214 (648)
Q Consensus 206 WDlr~~~~~ 214 (648)
||.....+.
T Consensus 234 ~D~ds~~~~ 242 (362)
T KOG0294|consen 234 KDTDSDTPL 242 (362)
T ss_pred eccCCCccc
Confidence 777654333
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=4.9e-14 Score=141.85 Aligned_cols=167 Identities=17% Similarity=0.264 Sum_probs=137.7
Q ss_pred EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------ceeE------EeccCCCCeEEEEEcc-CCCE
Q 006360 31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------PKVS------WLKQHSAPTAGISFSS-DDKI 95 (648)
Q Consensus 31 ~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--------~~v~------~l~~H~~~V~slafsP-dg~~ 95 (648)
.+...|++.|+.+.+.+....++++|+.||.|.+||++... ++.. .-.+|+-.|..+.|-| |..+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 34456889999999988766699999999999999996432 0111 1235777899999999 8889
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeE
Q 006360 96 IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSS 172 (648)
Q Consensus 96 LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPd---G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~Vts 172 (648)
+.+++.|.++++||..+-+....+..++.|.+-+|+|- --+|++|..|-.|++.|+..+. .-..+. +|.+.|.+
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~Ls--GHr~~vla 193 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLS--GHRDGVLA 193 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeec--cccCceEE
Confidence 99999999999999999998888999999999999984 3467788889999999999883 345555 99999999
Q ss_pred EEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 173 LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 173 Lafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
+.|+|...| ++.+++.|+.|++||+|..
T Consensus 194 V~Wsp~~e~-----------vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 194 VEWSPSSEW-----------VLATGSADGAIRLWDIRRA 221 (397)
T ss_pred EEeccCcee-----------EEEecCCCceEEEEEeecc
Confidence 999997444 5666778999999999965
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.55 E-value=9.5e-14 Score=151.51 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=135.9
Q ss_pred CEEEEEECCCcEEEEECCCCcee------EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 006360 7 EHLASISLSGDLILHNLASGAKA------AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ 79 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i------~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~-v~~l~~ 79 (648)
..|+.+..||.|.++|....... ... ..|...|.++.|-| ++.+|++++.|.++++||+.+.... ...+.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence 46888999999999998643322 222 34788999999999 6669999999999999999877642 234789
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCce--------------------eeEe--------eCCCCeEE---
Q 006360 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRP--------------------SSCI--------TYEAPFSS--- 127 (648)
Q Consensus 80 H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~--------------------v~~~--------~h~~~I~s--- 127 (648)
|...|.++||.| +...|++|+.||.|.|||++.... .... .+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 999999999999 778899999999999999964320 0000 12233444
Q ss_pred EEEeCCCCEEEEEEc-CCeEEEEECCCCCC-----ceEEEeecCC---CCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006360 128 LAFIDDDWILTAGTS-NGRVVFYDIRGKPQ-----PLTVLRACSS---SEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (648)
Q Consensus 128 lafsPdG~~Lasgs~-DG~V~IWDl~s~~~-----~~~~l~~~~h---~~~VtsLafspdg~~Las~~~~~~~~~lvs~s 198 (648)
+.+..|...|++++. |+.|+|||++.... +......+.| .-.+.++..+.. +.+++..+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss------------Gt~L~AsC 290 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS------------GTYLFASC 290 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC------------CCeEEEEe
Confidence 555567788888777 99999999997532 2222332233 233455555443 33444445
Q ss_pred CCCeEEcCCCCCCC
Q 006360 199 VGDSILMPDPLPSV 212 (648)
Q Consensus 199 ~D~~IkvWDlr~~~ 212 (648)
.|+.|++|+++...
T Consensus 291 tD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLS 304 (720)
T ss_pred cCCcEEEEeccccC
Confidence 59999999998544
No 151
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=146.59 Aligned_cols=170 Identities=18% Similarity=0.245 Sum_probs=133.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC---------CceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS 71 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s---------g~~i~~l~~~~~~~V~~Vafspdg-~~lLaSgs~Dg~V~IWDl~t~~ 71 (648)
|+-||.+|++|+.||.|.+|.+-+ -+.++.+. +|.-.|+++....-+ +..+++++.|.++++||+..+.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 788999999999999999998732 23455555 477888888876542 3379999999999999999887
Q ss_pred ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc----------------ee-eEeeCCC--CeEEEEEeC
Q 006360 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------PS-SCITYEA--PFSSLAFID 132 (648)
Q Consensus 72 ~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk----------------~v-~~~~h~~--~I~slafsP 132 (648)
.... ......+.+++..|-+..+++|+.+|.|.+.++..-. .+ ...+|.+ .|+|++++-
T Consensus 210 LLlt--i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 210 LLLT--ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred eeEE--EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 4332 3445679999999999999999999999998874322 11 1224666 999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 133 dG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
||..|++|+.||.|+|||+.+. ++++.+. ...++|+.+.+.|
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~--~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSK-QCIRTLQ--TSKGPVTNLQINP 329 (476)
T ss_pred CccEEEeeCCCCCEEEEecchH-HHHHHHh--hhccccceeEeec
Confidence 9999999999999999999987 5555554 2568888888865
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=1e-13 Score=152.47 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=155.3
Q ss_pred ccCCCCEEEEEECCC-----cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 006360 2 YNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K 73 (648)
Q Consensus 2 FSpdG~~Lasgs~DG-----~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~---~ 73 (648)
.||+|+++|+++... .|++|+..+...+..+.+ |.-.|+.++|+||++ +|++.+.|.++.+|....... .
T Consensus 533 ~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 533 ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhh
Confidence 578999999987654 499999988888888887 777889999999999 899999999999999844321 1
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--cee---eEeeCCCCeEEEEEeC-----CCCEEEEEEcC
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPS---SCITYEAPFSSLAFID-----DDWILTAGTSN 143 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg--k~v---~~~~h~~~I~slafsP-----dG~~Lasgs~D 143 (648)
....+.|+..|+++.|+|+++++++++.|++|++|..... +.+ ..+.+...|+.++|.| .+..+++|-+.
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 3457899999999999999999999999999999998876 433 2346888999999987 24588999999
Q ss_pred CeEEEEECCCCCC---------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 144 GRVVFYDIRGKPQ---------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 144 G~V~IWDl~s~~~---------~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
|.|.||......+ ....-....|...|..+.|.|...---. ...+...+..++.|..++++++.
T Consensus 691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~--~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWV--EDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccc--cccceeEEeeecccceeEEeecc
Confidence 9999999651111 1111122367888999999984211000 11233445777779999998763
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=7.2e-14 Score=140.51 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=147.8
Q ss_pred ccCCC-----CEEEEEECCCcEEEEECCC--CceeE--EE----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006360 2 YNCKD-----EHLASISLSGDLILHNLAS--GAKAA--EL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (648)
Q Consensus 2 FSpdG-----~~Lasgs~DG~V~IwDl~s--g~~i~--~l----~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~ 68 (648)
|.|+. ++||+.+ ..+++|.+.. .+... .+ ..++...++++.|+.-..++|.+++-|-+..|||++
T Consensus 104 wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred ecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 55654 3455543 4699999863 22111 11 123467889999998887799999999999999998
Q ss_pred CCCc--eeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe---e-CCCCeEEEEEeC-CCCEEEEE
Q 006360 69 GRSP--KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI---T-YEAPFSSLAFID-DDWILTAG 140 (648)
Q Consensus 69 t~~~--~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~---~-h~~~I~slafsP-dG~~Lasg 140 (648)
.+.. ....+..|...|++|+|.. .-.+|++++.||.|++||++..+...++ . ...+...++|++ |-+++|+-
T Consensus 182 ~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 182 TGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence 7632 3467889999999999998 3468999999999999999987655444 2 256788999998 56777765
Q ss_pred EcC-CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 141 TSN-GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 141 s~D-G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
..| ..|.|.|+|....++..++ +|.+.|.+|+|.|.. ...+.+++.|..+-+||+..
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS-----------~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHS-----------SSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred hcCCceEEEEEecCCCcceehhh--cCcccccceEecCCC-----------CceeeecCCcceEEEEeccc
Confidence 554 4699999999888887777 899999999999963 33455556699999999963
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=9e-14 Score=145.16 Aligned_cols=150 Identities=15% Similarity=0.250 Sum_probs=125.6
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCce---------eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---
Q 006360 2 YNCKDE-HLASISLSGDLILHNLASGAK---------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--- 68 (648)
Q Consensus 2 FSpdG~-~Lasgs~DG~V~IwDl~sg~~---------i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~--- 68 (648)
|.++.. .|++|+.|..|+||.++.+.. +..+ .+|...|++|.|+|+|+ ++++|+++|.|.+|...
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~ 98 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVR 98 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcC
Confidence 344444 899999999999998864321 1223 35788999999999999 99999999999999775
Q ss_pred -----C-----C--CceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCC
Q 006360 69 -----G-----R--SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW 135 (648)
Q Consensus 69 -----t-----~--~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~ 135 (648)
+ . ....+.+.+|...|+.++|+|++.++++++.|..+++||+..|+....+ .|...+..++|.|-++
T Consensus 99 ~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 99 IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 2 1 1234567889999999999999999999999999999999999988877 5999999999999999
Q ss_pred EEEEEEcCCeEEEEECCC
Q 006360 136 ILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 136 ~Lasgs~DG~V~IWDl~s 153 (648)
++++-+.|...+++++..
T Consensus 179 yv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhhccCcccceeeeee
Confidence 999999998777777654
No 155
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.52 E-value=2.7e-14 Score=147.11 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=127.9
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSpdG~-~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|||... .|++++.|+.|.|||++++..+..+.. .-..+.|+|+|.. ..|++|..|..++.||++.-...+....+|
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCccc-cceeeccccccceehhhhhhcccchhhccc
Confidence 677664 677788999999999999988877653 3345679999955 478999999999999998777667888999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe--eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~--~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
...|.+++|+|.|+.|++|+.|++|+||..+.+...-+. ..-..|.|+.|+-|.++|++|+.|+.|++|..+..
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999999999999999999999999999999887654433 24467999999999999999999999999988754
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3.4e-13 Score=136.88 Aligned_cols=161 Identities=21% Similarity=0.314 Sum_probs=129.1
Q ss_pred EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q 006360 31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP 110 (648)
Q Consensus 31 ~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl 110 (648)
++.....+.|..|.|++.+. .|+.+++||++++||+.... +.....|..++.+++|.+ ...+++|+-||.|+.+|+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 45555678899999998877 56666799999999998875 445567899999999985 678999999999999999
Q ss_pred CCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 111 ~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
.++.......|...|.|+.+++....+++|++|++|++||.+.. .....+ .....|.++... +
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~---d~~kkVy~~~v~-------------g 145 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTF---DQGKKVYCMDVS-------------G 145 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-cccccc---ccCceEEEEecc-------------C
Confidence 99998888889999999999998889999999999999999974 222222 234467777653 3
Q ss_pred CeEEEEeeCCCeEEcCCCCCCCC
Q 006360 191 ETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 191 ~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
. .|+.+..|+.|.+||+|....
T Consensus 146 ~-~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 146 N-RLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred C-EEEEeecCceEEEEEcccccc
Confidence 3 444445599999999996554
No 157
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.51 E-value=3e-13 Score=148.61 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=154.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEe--CCCCCcEEEEEEccCC----------CeEEEEEeCCCeEEEEECCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNS----------RHLLVTAGDDGTLHLWDTTG 69 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~--~~~~~~V~~Vafspdg----------~~lLaSgs~Dg~V~IWDl~t 69 (648)
|++....|.+.-.|..|+|||+++-+.+.+.. -.|...|..|.--|.+ +..|++|+.|++|++||+..
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence 67777888888899999999998644332211 1255555555543310 11589999999999999965
Q ss_pred CC--ceeE----------------------------------EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 006360 70 RS--PKVS----------------------------------WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR 113 (648)
Q Consensus 70 ~~--~~v~----------------------------------~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg 113 (648)
.. ...+ ...+....|.+++.+|++++|++|..-|.|++||+..-
T Consensus 412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 11 0000 01122345899999999999999999999999999987
Q ss_pred ceeeEe-eCCCCeEEEEEeC---CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC--CeEEEecc
Q 006360 114 RPSSCI-TYEAPFSSLAFID---DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK--PVFIDETT 187 (648)
Q Consensus 114 k~v~~~-~h~~~I~slafsP---dG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg--~~Las~~~ 187 (648)
+....+ .|+..|.|+.|+. ..++|++++.|..|+|||+.....++..+. +|...|++|.|.-+| ..++++|.
T Consensus 492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld--~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD--GHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc--ccccceeEEEEeecCCceEEEeccC
Confidence 655444 6999999999985 367899999999999999988767777777 899999999998877 45555433
Q ss_pred C-----------------------------------CCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 188 C-----------------------------------KAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 188 ~-----------------------------------~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
+ ....+++++..|+.|+|||+....
T Consensus 570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 2 223467888889999999986433
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.6e-13 Score=144.78 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=153.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--
Q 006360 1 MYNCKDEHLASISLSGDLILHNLAS--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-- 70 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~s--------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~-- 70 (648)
+|.+....|++++.||.|.+|++.. -+.+.+|.+ |..+|-||++..+++ .+++|+.||+|+.|++...
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCce-EEEeeccCceeeeeccCCCCC
Confidence 4677778999999999999999932 246778887 788889999999998 7999999999999966311
Q ss_pred -------CceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee---------------------------
Q 006360 71 -------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS--------------------------- 116 (648)
Q Consensus 71 -------~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v--------------------------- 116 (648)
......+.+|.+.|+.++++.....|++|+.||++++|+.......
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 1224578899999999999998888999999999999997543320
Q ss_pred -----------------eEee--------CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee
Q 006360 117 -----------------SCIT--------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS 171 (648)
Q Consensus 117 -----------------~~~~--------h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~Vt 171 (648)
.++. ....+..+.++|.+.+.+++..|+.|+++|..+++..... . .|...++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~-~--a~~~svt 535 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM-V--AHKDSVT 535 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe-e--eccceec
Confidence 0000 0133567888898899999999999999999988433222 2 6899999
Q ss_pred EEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 172 SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 172 sLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
++++.|+|.|+.+ ++.|+.+++|.+....+.
T Consensus 536 slai~~ng~~l~s------------~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 536 SLAIDPNGPYLMS------------GSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ceeecCCCceEEe------------ecCCceeehhhccchhee
Confidence 9999997666544 467999999988655443
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.4e-14 Score=162.11 Aligned_cols=193 Identities=15% Similarity=0.250 Sum_probs=146.0
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 2 FSpdG-~~Lasgs~DG~V~IwDl~sg~~i~~l~~-~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
||+.. ++||+|+.||.|.|||+++-+.-..+.. ...+.|.+++|+..-.++|++++.+|.+.|||++..+..+ .+..
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-~ls~ 202 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-KLSD 202 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc-cccc
Confidence 67765 4999999999999999987554443322 2456789999999888899999999999999999887543 4444
Q ss_pred CCC--CeEEEEEcc-CCCEEEEEeCCC---eEEEEeCCCC-ceeeEe-eCCCCeEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 006360 80 HSA--PTAGISFSS-DDKIIASVGLDK---KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYD 150 (648)
Q Consensus 80 H~~--~V~slafsP-dg~~LaSgs~Dg---~I~IWDl~tg-k~v~~~-~h~~~I~slafsPdG-~~Lasgs~DG~V~IWD 150 (648)
|.. .+..++|+| +...|+++++|. .|.+||+|.. .+++++ .|...|.++.|++.+ .+|++++.|+.|.+|+
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence 443 477899999 446677777765 7999999864 355666 699999999999955 8899999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 151 l~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.++++. +..+ ......+..+.|+|...-+ +...+.||.|-|+.+.
T Consensus 283 ~~tgEv-l~~~--p~~~nW~fdv~w~pr~P~~-----------~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 283 PNTGEV-LGEL--PAQGNWCFDVQWCPRNPSV-----------MAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCCceE-eeec--CCCCcceeeeeecCCCcch-----------hhhheeccceeeeeee
Confidence 999732 2222 2456889999999965532 2233446666666554
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.5e-13 Score=147.21 Aligned_cols=192 Identities=16% Similarity=0.228 Sum_probs=142.3
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------------- 69 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t------------- 69 (648)
.|.|.+|++|+.||+|+||.+.+|.|++.+. -.+.|.||+|+|.+...+++++.+..+.|-+..-
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell 486 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL 486 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence 5789999999999999999999999999988 4578999999998875555555544444443210
Q ss_pred -----------------------CCceeEEeccCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCce--------
Q 006360 70 -----------------------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRP-------- 115 (648)
Q Consensus 70 -----------------------~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg---~I~IWDl~tgk~-------- 115 (648)
...-+.....|...|..+.|+..|.||+++.-++ .|.|+++...+.
T Consensus 487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk 566 (733)
T KOG0650|consen 487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK 566 (733)
T ss_pred hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC
Confidence 0001234456777899999999999999877654 677777743211
Q ss_pred ---eeE------------------------------e-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006360 116 ---SSC------------------------------I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (648)
Q Consensus 116 ---v~~------------------------------~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l 161 (648)
... + ....+|..++.+|.|..|++|+.|+.++.||+.-..++++.+
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred CceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence 110 0 123457889999999999999999999999999888888888
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
. .|...|++|+||+.-++++++ +.|+.+.|+.-+-
T Consensus 647 r--~H~~avr~Va~H~ryPLfas~------------sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 647 R--LHEKAVRSVAFHKRYPLFASG------------SDDGTVIVFHGMV 681 (733)
T ss_pred h--hhhhhhhhhhhccccceeeee------------cCCCcEEEEeeee
Confidence 8 789999999999965555554 5577777765443
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=6.1e-12 Score=131.32 Aligned_cols=192 Identities=23% Similarity=0.396 Sum_probs=148.1
Q ss_pred cCCCC-EEEEEEC-CCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 006360 3 NCKDE-HLASISL-SGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 3 SpdG~-~Lasgs~-DG~V~IwDl~s-g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~-Dg~V~IWDl~t~~~~v~~l~ 78 (648)
++++. +++..+. |+.+.+||... ......+.. |...|..++|++++. .++.++. |+.+++|++..... +..+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 195 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKP-LSTLA 195 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCce-EEeec
Confidence 45666 4444344 89999999977 666666765 777888999999998 6777775 99999999987553 66778
Q ss_pred cCCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCceee-Ee-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 79 QHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 79 ~H~~~V~slafsPdg~-~LaSgs~Dg~I~IWDl~tgk~v~-~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
.|...|.+++|+|++. ++++++.|+.|++||...+..+. .+ .|...+ ...|++++.++++++.|+.+++||++...
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 8999999999999887 66666999999999999777766 34 455554 33899999899999999999999999775
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
.....+ ..|...|.++.|.|++..+++ ++.|+.+++||.....
T Consensus 275 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~------------~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 275 SLLRTL--SGHSSSVLSVAFSPDGKLLAS------------GSSDGTVRLWDLETGK 317 (466)
T ss_pred cEEEEE--ecCCccEEEEEECCCCCEEEE------------eeCCCcEEEEEcCCCc
Confidence 533333 478999999999985544443 3446668888666444
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.49 E-value=5.8e-13 Score=135.73 Aligned_cols=181 Identities=15% Similarity=0.274 Sum_probs=140.5
Q ss_pred CccCCCCEEEEEECCCcEEEEEC-CCCceeE---EEe---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006360 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAA---ELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl-~sg~~i~---~l~---~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~ 73 (648)
+|+|||.+|++| ....|+|||+ +.|.... ++. ....+.|.|++|+|.....++.++....+-||.-....+
T Consensus 165 ~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p- 242 (406)
T KOG2919|consen 165 QFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP- 242 (406)
T ss_pred EecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-
Confidence 599999999866 5679999998 4443221 111 123678999999998877899999999999998877775
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCc-eeeEe-eCCC-CeEEEEE--eCCCCEEEEEEcCCeEE
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRR-PSSCI-TYEA-PFSSLAF--IDDDWILTAGTSNGRVV 147 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~tgk-~v~~~-~h~~-~I~slaf--sPdG~~Lasgs~DG~V~ 147 (648)
+..+.+|.+.|+.++|.++|+.|++|.. |-.|..||++.-+ ++..+ .|.. .-..|-| .|++++|++|+.||.|+
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 6778899999999999999999999876 5689999998643 33333 3333 2334444 57899999999999999
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 148 IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+||++.....+.++. .|...|..++++|--++++++
T Consensus 323 vwdlk~~gn~~sv~~--~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTG--NYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred EEecCCCCCcccccc--cccccccceecCcccceeeec
Confidence 999998555444444 788999999999987777776
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.2e-12 Score=127.23 Aligned_cols=208 Identities=15% Similarity=0.189 Sum_probs=147.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC---------Cc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLAS---------GA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~s---------g~-~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
|++|-+++|+.|..+|.|.++.+++ ++ .+...+ .|...|+.++|..+ +|++|++ |.|+-|.....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhh
Confidence 6889999999999999999998853 22 233334 47888999999833 5777665 99999977432
Q ss_pred Cc----e--e-EEeccCC-----CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEE
Q 006360 71 SP----K--V-SWLKQHS-----APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWIL 137 (648)
Q Consensus 71 ~~----~--v-~~l~~H~-----~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~L 137 (648)
.. + . .....|. -.|+++-..|..+-|+.++.|+.++.||+++|+..+.+ +|...|.+++-......|
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence 21 0 0 0111222 25889999997777888889999999999999999888 699999999986666679
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 138 asgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp-dg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
++|++||+|+|||+++. +.+.++..+.|..... | .|++|-+- ..++..+++|. ...+.+|.++...+...
T Consensus 172 lsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lR-----p~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLR-----PDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred eecCCCccEEEEecccc-ceeEEeccccChhhcC-----cccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEE
Confidence 99999999999999998 4566666554433211 1 23333222 12444556555 67889999987777665
Q ss_pred cccCcc
Q 006360 217 VSLSTA 222 (648)
Q Consensus 217 ~ss~~~ 222 (648)
...+++
T Consensus 243 fpipa~ 248 (325)
T KOG0649|consen 243 FPIPAR 248 (325)
T ss_pred Eecccc
Confidence 544333
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.48 E-value=1.2e-12 Score=131.69 Aligned_cols=192 Identities=18% Similarity=0.314 Sum_probs=143.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce-eEEEeC----CCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCcee
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKD----PNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~-i~~l~~----~~~~~V~~Vafsp--dg~~lLaSgs~Dg~V~IWDl~t~~~~v 74 (648)
|.||+..+++-. |..|.+|++..+.. +..+.. .+....+.-+|+| ++. .+++ ..|+++..||+++..+..
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCCcEEEEEccchhhhc
Confidence 789999988775 88999999987765 444442 2344566678998 344 4444 678999999999877655
Q ss_pred EEeccCCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEE
Q 006360 75 SWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD 150 (648)
Q Consensus 75 ~~l~~H~~~V~slafsPd-g~~LaSgs~Dg~I~IWDl~tgk-~v~~~-~h~~~I~slafsPd-G~~Lasgs~DG~V~IWD 150 (648)
..-..|...|..+.|+|+ ..+|++|+.||.|+|||.+.-+ +++.+ +|..+|+++.|+|. .++|++|+.|..|.+|.
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 556789899999999994 5678999999999999998754 55555 69999999999994 67888999999999997
Q ss_pred CCCCC-----------------------Cc-----eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006360 151 IRGKP-----------------------QP-----LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (648)
Q Consensus 151 l~s~~-----------------------~~-----~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~ 202 (648)
...-. ++ +..+ ..|...|++++|+.-.++++ .+-+.||.
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--dehEDSVY~~aWSsadPWiF-----------ASLSYDGR 354 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--DEHEDSVYALAWSSADPWIF-----------ASLSYDGR 354 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccc--cccccceEEEeeccCCCeeE-----------EEeccCce
Confidence 64311 00 1112 26899999999998655543 34456777
Q ss_pred EEcCCCC
Q 006360 203 ILMPDPL 209 (648)
Q Consensus 203 IkvWDlr 209 (648)
+.|=.+.
T Consensus 355 viIs~V~ 361 (370)
T KOG1007|consen 355 VIISSVP 361 (370)
T ss_pred EEeecCC
Confidence 7665544
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.1e-12 Score=142.17 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=141.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v-~~l~~ 79 (648)
||. ++.+|++.+.+|.|.-||+.+++....+.. .+..|.+++.+|.+. .++.|++||.++++++..+.... ..+..
T Consensus 76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred EEc-cCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccc
Confidence 466 566788889999999999999999988875 788999999999887 88999999977777776655322 23344
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-----eC----CCCeEEEEEeCCCCEEEEEEcCCeEEEEE
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TY----EAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-----~h----~~~I~slafsPdG~~Lasgs~DG~V~IWD 150 (648)
.++.|.++.|+|++..|+.|+.||.|++||...+..+..+ .. ..-|+++.|-.| ..|++|..-|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 5688999999999999999999999999999998876633 11 123566766655 4799999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 151 l~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
...+. +++.+. .|...|.+++..+++.+++++|
T Consensus 232 ~~~gT-LiqS~~--~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 232 SIFGT-LIQSHS--CHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred ccCcc-hhhhhh--hhhcceeEEEEcCCCCeEEEcc
Confidence 99873 333333 6889999999998776666653
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=4.7e-13 Score=146.14 Aligned_cols=169 Identities=16% Similarity=0.329 Sum_probs=138.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
||-|||..|+.+. +..+.|||...|..+..+++ |.+.|.||+|+.||+ .|++|+.|+.|.||.-+-.. ..-..|
T Consensus 19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG---~LkYSH 92 (1081)
T KOG1538|consen 19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG---ILKYSH 92 (1081)
T ss_pred EECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCc-eeccCCCceeEEEecccccc---eeeecc
Confidence 6889999887664 45799999999999999997 889999999999999 89999999999999976544 234589
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
.+.|.|+.|+|-.+++++|+-.. .-+|...... +........|.+++|..||++++.|..||+|.|-+-... ..+.+
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I 169 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKI 169 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEE
Confidence 99999999999888899888654 6788876533 333345667899999999999999999999999866544 33344
Q ss_pred EeecCCCCCeeEEEEccC
Q 006360 161 LRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 161 l~~~~h~~~VtsLafspd 178 (648)
-+..+...+|++++|+|.
T Consensus 170 ~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred eCCCCCCCCceEEEecCC
Confidence 444467889999999995
No 167
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.46 E-value=5.6e-12 Score=134.65 Aligned_cols=175 Identities=15% Similarity=0.273 Sum_probs=141.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------- 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~------- 73 (648)
+|.++|+ +++|..+|.|.||+..+.+..+... .|.+.|.+++...+|. |++|+.|..|..||-.-.+..
T Consensus 253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchh
Confidence 3677776 5689999999999987777666666 5888899999999986 777999999999984211100
Q ss_pred --------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC
Q 006360 74 --------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY 121 (648)
Q Consensus 74 --------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h 121 (648)
.....+|.+..+.++.+|+..++++++.|+.+++|+ ..++......
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 113346888889999999999999999999999999 5566666667
Q ss_pred CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 122 EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 122 ~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
..++.|+.|+|.| .|+.|...|...+.|..+. ..+.+.. ...++.++.|+|+|.++|.++
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~---d~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT---DNEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe---cCCceEEEEEcCCCCEEEEec
Confidence 8899999999999 9999999999999999985 3333333 488999999999999988873
No 168
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.1e-11 Score=137.42 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=127.2
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~D---G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg--~V~IWDl~t~~~~v~ 75 (648)
+|+|||++|+..+.+ ..|++||+.+++... +.. ......++.|+|+|+.++++.+.++ .|++||+.++. +.
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~ 285 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LT 285 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eE
Confidence 589999999887643 469999998776543 322 2234456899999997767766666 59999998876 45
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC---eEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~-Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG---~V~IW 149 (648)
.+..+......++|+||+++|+.++. ++ .|+++|+.+++.............++|+|||++|+..+.++ .|++|
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 56666666678999999998887764 33 47888888777554443444556789999999998776443 59999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
|+.++. . ..+. +......+.|+|||++++....
T Consensus 366 d~~~g~-~-~~Lt---~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 366 DLSTGS-V-RTLT---PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred ECCCCC-e-EECC---CCCCCCCceECCCCCEEEEEEe
Confidence 998763 2 2333 3334567899999998876533
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=7.7e-13 Score=141.85 Aligned_cols=178 Identities=17% Similarity=0.233 Sum_probs=139.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|||||.-|++++.||.|+||. ++|-+..++. .....|+|++|.|+..+++++.+ +.+.|=-+..... +...+.|.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHD 186 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHD 186 (737)
T ss_pred cCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-eeEEeccC
Confidence 899999999999999999999 4665544444 36789999999999987777654 5566555655443 55679999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l 161 (648)
+-|.++.|++..++|++|++|...++||.........-.|+.+|++++|+|| ..++.++.+ ++++ ..
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---~~-------- 253 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---SS-------- 253 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eeee---cC--------
Confidence 9999999999999999999999999999876555555679999999999999 666666653 3442 11
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006360 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (648)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~ 202 (648)
...+.|..++|++||..++++ +..+.+++.-..+..
T Consensus 254 ---p~~GSifnlsWS~DGTQ~a~g--t~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 254 ---PRVGSIFNLSWSADGTQATCG--TSTGQLIVAYAIEQQ 289 (737)
T ss_pred ---CCccceEEEEEcCCCceeecc--ccCceEEEeeeehhh
Confidence 245789999999999998887 456677666555443
No 170
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.1e-11 Score=137.32 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=126.3
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeE
Q 006360 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~D---G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl--~t~~~~v~ 75 (648)
+|+|||+.|+..+.+ ..|++||+.+++... +.. ....+....|+||++.++++.+.++...||.+ .++. ..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 277 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LR 277 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--cE
Confidence 589999999877643 359999998887543 332 22344578999999966677788887666654 4444 45
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeC-CCe--EEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC---eEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGL-DKK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~-Dg~--I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG---~V~IW 149 (648)
.+..+...+....|+|||++|+.++. ++. |+++|+.+++...............|+|||++|+..+.++ .|++|
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 56666666678899999998887664 344 4444555555443333334455688999999999877654 59999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs 196 (648)
|+.++. ...+. .......+.|+|||++|+......+...+..
T Consensus 358 d~~~g~--~~~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 358 DLATGQ--VTALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ECCCCC--eEEcc---CCCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 998763 22332 2233467899999999888755444433333
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.44 E-value=1.3e-12 Score=142.05 Aligned_cols=199 Identities=22% Similarity=0.260 Sum_probs=149.9
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006360 1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (648)
Q Consensus 1 AFSp-dG~~Lasgs~DG~V~IwDl~sg~-------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~ 72 (648)
.|+| |...||+++.||.|++|.+..+. ....+.. |.+.|+.+.|+|-...+|++++.|-+|+|||+.+...
T Consensus 634 ~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~ 712 (1012)
T KOG1445|consen 634 HWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL 712 (1012)
T ss_pred ccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence 3666 55789999999999999986543 3344554 7888999999997777999999999999999988775
Q ss_pred eeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeEee--CCCCeEEEEEeCCCCEEEEEEcCC----e
Q 006360 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCIT--YEAPFSSLAFIDDDWILTAGTSNG----R 145 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~-v~~~~--h~~~I~slafsPdG~~Lasgs~DG----~ 145 (648)
...+.+|.+.|.+++|+|||+.+++.+.||+|++|..+.+.. +..-. ....-..+.|.-||.+|++.+.|. .
T Consensus 713 -~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ 791 (1012)
T KOG1445|consen 713 -YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ 791 (1012)
T ss_pred -hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence 457899999999999999999999999999999999988653 33221 233445678888999999887764 5
Q ss_pred EEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 146 VVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 146 V~IWDl~s~~-~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
|.+||..+.. .++.+ ..+...| ..|+-.++.+.+.++++|-.|..|.+|.+....+
T Consensus 792 v~~Y~Aq~l~~~pl~t----------~~lDvap--s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 792 VQMYDAQTLDLRPLYT----------QVLDVAP--SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhhhhhhccCCccee----------eeecccC--ccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 8899887642 12221 1222222 2233333455778889999999999998875443
No 172
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.8e-11 Score=135.76 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=124.5
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~---DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg--~V~IWDl~t~~~~v~ 75 (648)
+|+|||+.|+..+. +..|++||+.+++... +.. ....+..++|+|||+.++++...++ .|++||+.++. ..
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~~ 280 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR 280 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EE
Confidence 58999999887542 3579999998776433 221 1222345799999996666656555 58999998876 34
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC---CeEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg---~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D---G~V~IW 149 (648)
.+..+...+...+|+||++.|+.++.++ .|+++|+.+++..........+.+..|+|||++|+..+.+ ..|++|
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 4555556678899999999988777653 5666788777655444444556788999999999876643 358899
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
|+.++. ...+.. ........|+|||++|+..+.
T Consensus 361 dl~~g~--~~~Lt~---~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 361 DLATGG--VQVLTD---TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred ECCCCC--eEEeCC---CCCCCCceECCCCCEEEEEEc
Confidence 998763 233331 123456789999998887644
No 173
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=9.4e-12 Score=126.37 Aligned_cols=190 Identities=13% Similarity=0.207 Sum_probs=135.4
Q ss_pred CCEEEEEECCCcEEEEECCC---------CceeEEEeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCce--
Q 006360 6 DEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPK-- 73 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~s---------g~~i~~l~~~~~~~V~~Vafspdg-~~lLaSgs~Dg~V~IWDl~t~~~~-- 73 (648)
|+.+|+++.|++|.||.-.. .....++.. ....|.+|+|.|.. ..++++++.||+|+||+.......
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 78999999999999997411 112334443 56788999999853 237899999999999987432211
Q ss_pred ---eEEec-------cCCCCeEEEEEcc---CCCEEEEEeCC-----CeEEEEeCCCC--ceee--E-eeCCCCeEEEEE
Q 006360 74 ---VSWLK-------QHSAPTAGISFSS---DDKIIASVGLD-----KKLYTYDPGSR--RPSS--C-ITYEAPFSSLAF 130 (648)
Q Consensus 74 ---v~~l~-------~H~~~V~slafsP---dg~~LaSgs~D-----g~I~IWDl~tg--k~v~--~-~~h~~~I~slaf 130 (648)
.+.+. .+.....|+.|+| ...+|+.|+.+ +.++||....+ +... . ..|..+|+.++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 11122 3666789999998 45678888776 37888876543 2222 2 268999999999
Q ss_pred eCC----CCEEEEEEcCCeEEEEECCCC----------------CCceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCC
Q 006360 131 IDD----DWILTAGTSNGRVVFYDIRGK----------------PQPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCK 189 (648)
Q Consensus 131 sPd----G~~Lasgs~DG~V~IWDl~s~----------------~~~~~~l~-~~~h~~~VtsLafspdg~~Las~~~~~ 189 (648)
.|+ ..+||+++.|| |+||.++.. +-+++.+. ...|.+.|..+.|+-.
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt----------- 299 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT----------- 299 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee-----------
Confidence 995 46799999999 999999831 11233333 3489999999999874
Q ss_pred CCeEEEEeeCCCeEEcCCCC
Q 006360 190 AETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 190 ~~~~lvs~s~D~~IkvWDlr 209 (648)
+.+|.+.+.||+|++|...
T Consensus 300 -GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 300 -GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -eeEEeecCCCceeeehhhh
Confidence 4455556679999999754
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.43 E-value=3.6e-11 Score=125.49 Aligned_cols=197 Identities=25% Similarity=0.395 Sum_probs=149.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEE-ccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~-~i~~l~~~~~~~V~~Vaf-spdg~~lLaSgs~-Dg~V~IWDl~t~~~~v~~l~ 78 (648)
|.+++..++.++.|+.+.+|+...+. .+..+...+...+..+.+ ++++..+++..+. |+.+++||+.........+.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 56778888889899999999998776 666666534345666666 7777634444444 99999999987222467889
Q ss_pred cCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCC-EEEEEEcCCeEEEEECCCCC
Q 006360 79 QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~-~Lasgs~DG~V~IWDl~s~~ 155 (648)
.|...|.+++|+|++.+++.++. |+.+++|++..+..+..+. |...|.+++|+|++. ++++++.|+.|++||....
T Consensus 153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~- 231 (466)
T COG2319 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG- 231 (466)
T ss_pred cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-
Confidence 99999999999999998888886 9999999999877776664 789999999999988 5555589999999988854
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
..... ....|...+ ...|++++ .++++++.|+.+++||++....
T Consensus 232 ~~~~~-~~~~~~~~~-~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 232 KLLRS-TLSGHSDSV-VSSFSPDG------------SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cEEee-ecCCCCcce-eEeECCCC------------CEEEEecCCCcEEEeeecCCCc
Confidence 22221 233566664 33788865 3444667799999999986554
No 175
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=7.9e-12 Score=123.85 Aligned_cols=148 Identities=16% Similarity=0.285 Sum_probs=108.4
Q ss_pred ccCCCCEEEEEEC----------CCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCC
Q 006360 2 YNCKDEHLASISL----------SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTG 69 (648)
Q Consensus 2 FSpdG~~Lasgs~----------DG~V~IwDl~-sg~~i~~l~~~~~~~V~~Vafspdg~~lLaS-gs~Dg~V~IWDl~t 69 (648)
|+++|++|+.-.. -|...||-++ .+..+..+.......|.+++|+|+++.++++ |..++.|.|||++.
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~ 92 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG 92 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence 8899998765322 1234455442 2344455544345569999999999855444 44678999999973
Q ss_pred CCceeEEeccCCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc----
Q 006360 70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---- 142 (648)
Q Consensus 70 ~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~D---g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~---- 142 (648)
.. +..+ +...++.|.|+|+|++|++++.+ |.|.+||+++.+.+....|.. ++.++|+|||++|+++..
T Consensus 93 ~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 93 KK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRL 167 (194)
T ss_pred cE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccce
Confidence 32 3333 34678899999999999998754 579999999888887776654 789999999999998874
Q ss_pred --CCeEEEEECCCC
Q 006360 143 --NGRVVFYDIRGK 154 (648)
Q Consensus 143 --DG~V~IWDl~s~ 154 (648)
|+.++||+..+.
T Consensus 168 ~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 168 RVDNGFKIWSFQGR 181 (194)
T ss_pred eccccEEEEEecCe
Confidence 677999998754
No 176
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.2e-11 Score=133.97 Aligned_cols=176 Identities=14% Similarity=0.167 Sum_probs=129.3
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~---DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~--V~IWDl~t~~~~v~ 75 (648)
+|+|||+.|+..+. +..|++||+.+++.. .+.. ....+...+|+|||+.++++.+.++. |++||+.++. ..
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 283 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT 283 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE
Confidence 48999999888753 468999999877653 3332 33456678999999977777777665 7777888776 45
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC---CeEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~D-g--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D---G~V~IW 149 (648)
.+..+.......+|+||++.|+..+.. + .|++||+..++...+......+....|+|||++|+....+ ..|.+|
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 566677677889999999998877643 2 6899998877665555455667778999999999887653 358889
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
|+.+.. ...+. ....+..+.|+|||++|+..
T Consensus 364 d~~~~~--~~~lt---~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 364 KPDGSG--ERILT---SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ECCCCc--eEecc---CCCCCCCCeECCCCCEEEEE
Confidence 986542 23333 22357788999999988765
No 177
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.42 E-value=3.8e-12 Score=134.76 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=136.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce-eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEe
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWL 77 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~-i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~---~v~~l 77 (648)
|+.+...++.+..=|...+||+++++. ...+. .|...|+.|+++|...++|++++.|++++|||++.-.. .+...
T Consensus 287 ~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 287 FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred ccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 444555666777777999999987765 33344 36668999999999999999999999999999964321 13456
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC----CCceeeEeeCCC----C--eEEEEEeCCCCEEEEEEcCCeEE
Q 006360 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG----SRRPSSCITYEA----P--FSSLAFIDDDWILTAGTSNGRVV 147 (648)
Q Consensus 78 ~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~----tgk~v~~~~h~~----~--I~slafsPdG~~Lasgs~DG~V~ 147 (648)
..|...|.+..|+|.+-.|++.+.|..|+|||.. ...+..++.|.. + .....|.|+.++|++|-.-..|-
T Consensus 366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCccee
Confidence 7899999999999977669999999999999983 334455554432 2 34568999999999999999999
Q ss_pred EEECCCCCCceEEEeecCCCCCeeE-EEEccCCCeEEEeccCCCCeE
Q 006360 148 FYDIRGKPQPLTVLRACSSSEAVSS-LCWQRAKPVFIDETTCKAETA 193 (648)
Q Consensus 148 IWDl~s~~~~~~~l~~~~h~~~Vts-Lafspdg~~Las~~~~~~~~~ 193 (648)
|||-..+ +.+..+... ....|.+ ..|+|-+..+++++...+..+
T Consensus 446 v~~~~~~-q~v~el~~P-~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 446 VFDGNGG-QMVCELHDP-ESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred EEcCCCC-EEeeeccCc-cccccccceeecccccceeccCCccceEE
Confidence 9999887 322222211 1223444 579997766666644333333
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1.3e-11 Score=122.29 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=108.2
Q ss_pred EEEEccCCCeEEEEEeC---------CCeEEEEECCCCCceeEEec-cCCCCeEEEEEccCCCEEEEE--eCCCeEEEEe
Q 006360 42 VLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASV--GLDKKLYTYD 109 (648)
Q Consensus 42 ~Vafspdg~~lLaSgs~---------Dg~V~IWDl~t~~~~v~~l~-~H~~~V~slafsPdg~~LaSg--s~Dg~I~IWD 109 (648)
.+.|+++|.++++.... -+...||.++.....+..+. ...+.|.+++|+|++..|+++ ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 37899999877766551 13355665533332233333 234569999999999887655 4567999999
Q ss_pred CCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 110 PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 110 l~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~---DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++. ..+....| ..++.++|+|||+++++..
T Consensus 90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~~-~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFEH-SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeecccc-CcEEEEEEcCCCCEEEEEE
Confidence 97 55555554 567889999999999999875 467999999965 23333334 4578999999999999873
Q ss_pred cCCCCeEEEEeeCCCeEEcCCCC
Q 006360 187 TCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 187 ~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
... --..|+.++||+..
T Consensus 163 t~~------r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 163 TSP------RLRVDNGFKIWSFQ 179 (194)
T ss_pred ecc------ceeccccEEEEEec
Confidence 211 12348889999764
No 179
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=5.4e-11 Score=130.57 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=129.5
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~D---G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg--~V~IWDl~t~~~~v~ 75 (648)
+|+|||++|+.+..+ ..|++||+.+++..... . ....+.+++|+|+++.++++...++ .|++||+.++. ..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~-~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~ 271 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-S-FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LT 271 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-c-CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC--EE
Confidence 489999999887654 47999999887654322 2 3344556899999986666666554 58889988765 34
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC---eEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg---~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG---~V~IW 149 (648)
.+..+........|+||+++|+.++..+ .|++||+.+++......+...+..+.|+|+|++|+..+.++ .|++|
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 4555655566789999999887766533 68899998877655555666778889999999999888776 79999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCK 189 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~ 189 (648)
|+.+.. ...+.. ........|+|+|++|+......
T Consensus 352 d~~~~~--~~~l~~---~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 352 DLDGGG--ERVLTD---TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eCCCCC--eEEccC---CCCCCCceECCCCCEEEEEEeCC
Confidence 998752 233331 22345678999998887764433
No 180
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=9.6e-12 Score=128.54 Aligned_cols=194 Identities=15% Similarity=0.222 Sum_probs=147.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------- 71 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--------- 71 (648)
||++.-..+|++..|-.|++||-.. ++...++......|.|++|-|.+...|+.|+. +-|+||......
T Consensus 105 aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 105 AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred eechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccc
Confidence 5677666678899999999999644 77778886667889999999998878888877 559999873211
Q ss_pred ----ceeEEeccCCCCeEEEEEccCCCEEEEEeCC-CeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCe
Q 006360 72 ----PKVSWLKQHSAPTAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (648)
Q Consensus 72 ----~~v~~l~~H~~~V~slafsPdg~~LaSgs~D-g~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~ 145 (648)
..+..-.+| ..|+.+.|++||..+++++.+ ..|.|||..++..+... ...+.+.-+.|+|||.+|+++.-|+.
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence 002222344 679999999999999998764 58999999999887776 46778899999999999999999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006360 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (648)
Q Consensus 146 V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~ 202 (648)
.++|+........+... ..+.|...+|+|+|++|... +..+..+.+...++.
T Consensus 262 frlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~--~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFA--CSGSPRLYSLTFDGE 313 (445)
T ss_pred eeeehhcccceecceec---cCCceeeeeecCCCCEEEEE--EcCCceEEEEeecCC
Confidence 99996654322222222 34599999999999998776 335566666654443
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.3e-12 Score=138.64 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=125.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCC---------C
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG---------R 70 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd-g~~lLaSgs~Dg~V~IWDl~t---------~ 70 (648)
+|+.||.+|++|+.|-.+.|||....+.+..+...|...|.+++|-|. ++.++++|+.|..|++||+.. .
T Consensus 57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 589999999999999999999999889999998889999999999984 344889999999999999963 2
Q ss_pred CceeEEeccCCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCceee-----------EeeCCCCeEEEEEeC-CCCEE
Q 006360 71 SPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSS-----------CITYEAPFSSLAFID-DDWIL 137 (648)
Q Consensus 71 ~~~v~~l~~H~~~V~slafsPdg-~~LaSgs~Dg~I~IWDl~tgk~v~-----------~~~h~~~I~slafsP-dG~~L 137 (648)
......+..|...|..|+..|++ +.+.++++||+|+-+|++...... ....--...|+.++| +..+|
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 22356678899999999999977 889999999999999998632111 011223467899998 46789
Q ss_pred EEEEcCCeEEEEECC
Q 006360 138 TAGTSNGRVVFYDIR 152 (648)
Q Consensus 138 asgs~DG~V~IWDl~ 152 (648)
++|+.|-.+++||.+
T Consensus 217 aVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRR 231 (758)
T ss_pred EecCCCchhhhhhhh
Confidence 999999999999954
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.9e-11 Score=135.58 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=117.1
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCce
Q 006360 1 MYNCKDEHLASISLS---GDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPK 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~D---G~V~IwDl~sg~~i--~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IW--Dl~t~~~~ 73 (648)
+|+|||++|+.++.+ ..|++||+.+++.. ..+.+ ....++|+|||+.++++...+|.+.|| |+.++.
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-- 283 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-- 283 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC--
Confidence 589999999887654 36999999877543 22322 233579999999555555678875555 666555
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCC-CceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs-~Dg~I~IWDl~t-gk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
...+..+...+..++|+||++.|+.++ .++...||++.. +.....+.+.. .++.|+|||++|+..+.++ +.+||+
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl 360 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDL 360 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEEC
Confidence 455667777788999999999877665 567777776543 22223334333 4678999999999888765 666999
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 152 ~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
.++.. ..+.. . ....++.|+|+|++|+..+
T Consensus 361 ~~g~~--~~lt~-~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 361 TSGST--EVLSS-T--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCCCe--EEecC-C--CCCCCceECCCCCEEEEEE
Confidence 87632 22221 1 1345688999888877663
No 183
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.40 E-value=1.9e-11 Score=137.23 Aligned_cols=185 Identities=18% Similarity=0.239 Sum_probs=145.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-e----eEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 5 KDEHLASISLSGDLILHNLASGA-K----AAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~-~----i~~l~~~~~~~V~~Vafspd-g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
=|.+++++..++.|+||+....+ . +.-++. ..+.|+++ ++|. --+.|+.|+.+|.+.||++++++. +..+.
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~-~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-v~~f~ 199 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKV-EGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-VYTFQ 199 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeec-cCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-EEEec
Confidence 47889999999999999987641 1 112222 23337765 4553 223688999999999999999985 78899
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCC-CCeEEEEEeCCCCE-EEEEEcCCeEEEEECCCCCC
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWI-LTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~-~~I~slafsPdG~~-Lasgs~DG~V~IWDl~s~~~ 156 (648)
++...|+++.-+|--..++.|..+|+|.+++++.++.+..+.+. +.|+.++|..||.. +++|+..|.+-+||+...+.
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence 99999999999998889999999999999999999999999986 99999999999876 45666779999999998754
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcC
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvW 206 (648)
...+.. .|.+.|..+.|.+..+ ++++.+.|+.+++|
T Consensus 280 ~~v~~n--ah~~sv~~~~fl~~ep------------Vl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 280 INVTRN--AHYGSVTGATFLPGEP------------VLVTAGADNSLKVW 315 (910)
T ss_pred eeeeec--cccCCcccceecCCCc------------eEeeccCCCceeEE
Confidence 333333 7889999999988544 44555556666655
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=3.7e-11 Score=128.11 Aligned_cols=195 Identities=10% Similarity=0.075 Sum_probs=130.6
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-Cc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 006360 1 MYNCKDEHLASISL-SGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV- 74 (648)
Q Consensus 1 AFSpdG~~Lasgs~-DG~V~IwDl~s-g~---~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v- 74 (648)
+|+|+|++|++++. ++.|.+|++.+ +. .+..+. .....+.++|+|+++.++++...++.|.+||+.......
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 47899998887764 78999999864 32 222222 223456788999999666777788999999997632111
Q ss_pred -----EEeccCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCC--Cce--eeEee-------CCCCeEEEEEeCCCCEE
Q 006360 75 -----SWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS--RRP--SSCIT-------YEAPFSSLAFIDDDWIL 137 (648)
Q Consensus 75 -----~~l~~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~t--gk~--v~~~~-------h~~~I~slafsPdG~~L 137 (648)
... ........+.|+|++++++++.. ++.|.+||+.. ++. +..+. +......+.|+|+|++|
T Consensus 164 ~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 011 12234678999999999988876 89999999973 332 22221 11223468899999999
Q ss_pred EEEEc-CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 138 TAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 138 asgs~-DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
+++.. ++.|.+|++.........+....-......+.|+|+|++|++. ...++.|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va-----------~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA-----------GQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE-----------EccCCcEEEEEEc
Confidence 98865 7889999997543333333321122345678999988777654 2346788888664
No 185
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=1.1e-11 Score=136.68 Aligned_cols=197 Identities=13% Similarity=0.149 Sum_probs=149.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-ee-EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA-KA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-------- 71 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~-~i-~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-------- 71 (648)
|+++++.+++-+..|-.++|..++.. .. ..+-..|-+.|.+|+|.|.|+ +|++.+.|.+-+||-.-+.+
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecc
Confidence 78999999999999999999833321 11 122235778899999999998 78888888887775221000
Q ss_pred -------------------------ce-----------------------------------------------------
Q 006360 72 -------------------------PK----------------------------------------------------- 73 (648)
Q Consensus 72 -------------------------~~----------------------------------------------------- 73 (648)
.+
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 00
Q ss_pred -----------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCCC-----eEEEEeCCCC
Q 006360 74 -----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGSR 113 (648)
Q Consensus 74 -----------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg-----~I~IWDl~tg 113 (648)
++.+++|...|++++.+|++++|++++... .|++|+..+-
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 125678999999999999999999998754 6999999887
Q ss_pred ceee-EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006360 114 RPSS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (648)
Q Consensus 114 k~v~-~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~-l~~~~h~~~VtsLafspdg~~Las~~~~~~~ 191 (648)
..+. +..|.-.|+.++|+|||++|++.+.|+++.+|........... -....|...|++..|+|++++
T Consensus 563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~---------- 632 (764)
T KOG1063|consen 563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY---------- 632 (764)
T ss_pred hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce----------
Confidence 6666 4479999999999999999999999999999998654322111 112379999999999996555
Q ss_pred eEEEEeeCCCeEEcCCCCCC
Q 006360 192 TALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 192 ~~lvs~s~D~~IkvWDlr~~ 211 (648)
+++++.|.+|++|.....
T Consensus 633 --FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 --FATASRDKKVKVWEEPDL 650 (764)
T ss_pred --eEEecCCceEEEEeccCc
Confidence 455577999999977644
No 186
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=6.9e-12 Score=127.58 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=118.8
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 006360 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119 (648)
Q Consensus 40 V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~ 119 (648)
..|+.|++.|. +|+.|+.||.|.|||+.+... .+.+.+|..+|.+++|++||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i-ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI-ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch-hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 56789999998 899999999999999998874 6788999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCCCCceEEEeec--CC-CCCeeEEEEccCCCeEEEeccCCCCeEEE
Q 006360 120 TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SS-SEAVSSLCWQRAKPVFIDETTCKAETALL 195 (648)
Q Consensus 120 ~h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~--~h-~~~VtsLafspdg~~Las~~~~~~~~~lv 195 (648)
....+|+.+.|+|. .+.+++.-.+..-.+.++..... .++... +. .....+..|++.|+|+ +
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g~yI------------i 169 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRRGKYI------------I 169 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCCCCEE------------E
Confidence 99999999999994 33333333444455555554321 222211 00 1111223466655555 4
Q ss_pred EeeCCCeEEcCCCCCCCCccc
Q 006360 196 GGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 196 s~s~D~~IkvWDlr~~~~~ss 216 (648)
+|...|.+.++|........+
T Consensus 170 tGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred EecCcceEEEEecchheeeee
Confidence 445577888887776665543
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.38 E-value=1.1e-11 Score=125.00 Aligned_cols=179 Identities=14% Similarity=0.301 Sum_probs=136.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCce---eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc--
Q 006360 5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-- 79 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~---i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~-- 79 (648)
|-++|.+.+-|.+..|||++++.. ...+- .|...|.+|+|...+..+|++++.||.|++||++..+-. ..+.+
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI-AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p 239 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI-AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDP 239 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEE-ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCC
Confidence 346889999999999999998732 33343 378889999999988889999999999999999876521 22222
Q ss_pred C-CCCeEEEEEcc-CCCEEEEEeCCC-eEEEEeCCCCc-eeeEe-eCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCC
Q 006360 80 H-SAPTAGISFSS-DDKIIASVGLDK-KLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 80 H-~~~V~slafsP-dg~~LaSgs~Dg-~I~IWDl~tgk-~v~~~-~h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s 153 (648)
. ..+...++|++ |.+++++-..|. .|.|.|++... ++..+ +|.+.|+.++|.|. ...|++++.|..+.|||+..
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 2 45788999999 778888877765 79999999754 44444 79999999999995 67899999999999999986
Q ss_pred CCC--ceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 006360 154 KPQ--PLTVLRACSSSEAVSSLCWQR-AKPVFIDE 185 (648)
Q Consensus 154 ~~~--~~~~l~~~~h~~~VtsLafsp-dg~~Las~ 185 (648)
... ...-+-.+...+.|..+.|++ ...+++.+
T Consensus 320 ~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 320 MPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred ccccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence 432 111122234678899999996 44567666
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=5.9e-12 Score=135.19 Aligned_cols=167 Identities=16% Similarity=0.263 Sum_probs=131.6
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~s 86 (648)
+.|+.++.||.+.|.+ +.++....+.. |...+.+-.|+++|. -|++++.||.|+||.-.+-- ...+......|+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence 4688889999999998 47777777775 667778889999998 68999999999999876532 2345566778999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 006360 87 ISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS 165 (648)
Q Consensus 87 lafsPdg~~LaSgs~Dg~I~IWDl~tg-k~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~ 165 (648)
++|.|+...++.|-.+ .+.|=-+... ++++-..|.+-|.|+.|++..++|++|++|-..+|||-.+. ..+....
T Consensus 151 ~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----~Lf~S~~ 225 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----NLFTSAA 225 (737)
T ss_pred EEECCCCCceEEecCC-eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----ccccCCh
Confidence 9999977766665544 3555455433 45555679999999999999999999999999999998875 3455557
Q ss_pred CCCCeeEEEEccCCCeEE
Q 006360 166 SSEAVSSLCWQRAKPVFI 183 (648)
Q Consensus 166 h~~~VtsLafspdg~~La 183 (648)
|..+|++++|.|+..|++
T Consensus 226 ~ey~ITSva~npd~~~~v 243 (737)
T KOG1524|consen 226 EEYAITSVAFNPEKDYLL 243 (737)
T ss_pred hccceeeeeeccccceee
Confidence 999999999999854444
No 189
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.36 E-value=8.5e-12 Score=127.58 Aligned_cols=186 Identities=12% Similarity=0.159 Sum_probs=140.8
Q ss_pred EEEEEECCCcEEEEECCCCc---eeEEEeCC-CCCcEEEEEEccC---CCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 8 HLASISLSGDLILHNLASGA---KAAELKDP-NEQVLRVLDYSRN---SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~---~i~~l~~~-~~~~V~~Vafspd---g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.+++.+ .+.+.||...... .++.+... +.+....++|.-+ ++-+++.++.-|.|+|.|+..++. ...+.+|
T Consensus 57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-~~~~~gh 134 (385)
T KOG1034|consen 57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-SKNYRGH 134 (385)
T ss_pred eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-ccceecc
Confidence 455554 4578899875433 33334333 4566666788643 344888889999999999988875 6788999
Q ss_pred CCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 81 ~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
...|+.|.|+| +.+++++++.|..|++||+++..++.+++ |...|.++.|+.+|.+|++++.|..|.+|++..+.
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 99999999999 66899999999999999999999999884 89999999999999999999999999999998321
Q ss_pred Cc--eE----------------------EE-eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 156 QP--LT----------------------VL-RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 156 ~~--~~----------------------~l-~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
-. +. .+ ...-|...|-|+.|- +.++++-+.++.|..|.+.
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--------------gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--------------GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--------------hhheeecccCceEEEEecc
Confidence 00 00 00 111355555555553 2467777779999999884
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.36 E-value=1.1e-11 Score=126.58 Aligned_cols=183 Identities=14% Similarity=0.212 Sum_probs=142.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc---eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~---~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl-~t~~-~~v~ 75 (648)
||++|+..+|.+-....|.||.....+ ...++.. |...|++|+|+|..+ .|++|+.|..-+||.. .++. ....
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccce
Confidence 799999999999999999999876544 5566665 778899999999987 6999999999999998 4332 2244
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee---e--EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---S--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v---~--~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWD 150 (648)
.+..|...+++|.|+|.++.|++|+....|.+|-.+...-- + ...+...|.++.|+|++-+|++|+.|+..+||.
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 56778899999999999999999999999999887765432 1 123677899999999999999999999999885
Q ss_pred CC-----CC--------CCceEEEe-ec-CCCCCeeEEEEccCCCeEEEe
Q 006360 151 IR-----GK--------PQPLTVLR-AC-SSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 151 l~-----s~--------~~~~~~l~-~~-~h~~~VtsLafspdg~~Las~ 185 (648)
.- .. +.++-.+. .. ...+.|..+.|+|+|..|+..
T Consensus 175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 42 11 11111111 11 456889999999988877665
No 191
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.36 E-value=6.9e-11 Score=126.45 Aligned_cols=177 Identities=15% Similarity=0.288 Sum_probs=137.9
Q ss_pred EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEE
Q 006360 9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGIS 88 (648)
Q Consensus 9 Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~sla 88 (648)
|+.|...+.|.-=.++++-.+ ..++ |.+....++.+|+.+ ++++++.|+.|+||+ ..+ +.+-+.-.+++.|+.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~-~v~g-h~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k--~~wt~~~~d~~~~~~ 414 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTL-TVQG-HGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHK--LEWTKIIEDPAECAD 414 (626)
T ss_pred EEEeeccceEEEeeecCCceE-EEEe-cccceeeEEcCCChh-heeeccCcceEEEcc--CCc--eeEEEEecCceeEee
Confidence 555655555555455444333 3444 666778899999887 899999999999999 333 345555667899999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC
Q 006360 89 FSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 89 fsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
|+|.| .|+.|...|...+.|..+...+.+.....++++++|+|+|.+||.|+.|+.|+||-+......+..+.. -+..
T Consensus 415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k-~~gs 492 (626)
T KOG2106|consen 415 FHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK-CSGS 492 (626)
T ss_pred ccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee-ecCc
Confidence 99999 999999999999999999777777767899999999999999999999999999999876555444443 2448
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcC
Q 006360 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (648)
Q Consensus 169 ~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvW 206 (648)
+|+.+.|++|++|+.+. +.|-.|-+|
T Consensus 493 ~ithLDwS~Ds~~~~~~------------S~d~eiLyW 518 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSN------------SGDYEILYW 518 (626)
T ss_pred eeEEeeecCCCceEEec------------cCceEEEEE
Confidence 99999999977666554 557777777
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.9e-12 Score=129.37 Aligned_cols=148 Identities=24% Similarity=0.348 Sum_probs=122.5
Q ss_pred eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCceeeEee---CC-CC
Q 006360 51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCIT---YE-AP 124 (648)
Q Consensus 51 ~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP--dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---h~-~~ 124 (648)
..++++-..|.|+|||..+++. +..++++...++.+.|.. ..+.+.+|+.||+|++||+|.......+. +. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 3688888899999999988764 788999999999999977 56789999999999999999876554442 33 46
Q ss_pred eEEEEEeCCCCEEEEEEc----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC
Q 006360 125 FSSLAFIDDDWILTAGTS----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 200 (648)
Q Consensus 125 I~slafsPdG~~Lasgs~----DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D 200 (648)
..|++.+-.++++++|++ |-.|.+||+|...+++..+.. .|...|++|+|+|+ +..++++|+.|
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~-----------~pnlLlSGSvD 187 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPS-----------DPNLLLSGSVD 187 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCC-----------CCCeEEeeccc
Confidence 778888778889998875 567999999998776555543 79999999999996 66788999999
Q ss_pred CeEEcCCCCCC
Q 006360 201 DSILMPDPLPS 211 (648)
Q Consensus 201 ~~IkvWDlr~~ 211 (648)
|.|.+||+...
T Consensus 188 GLvnlfD~~~d 198 (376)
T KOG1188|consen 188 GLVNLFDTKKD 198 (376)
T ss_pred ceEEeeecCCC
Confidence 99999999854
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.36 E-value=9.3e-12 Score=130.29 Aligned_cols=149 Identities=21% Similarity=0.399 Sum_probs=123.1
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 006360 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLY 106 (648)
Q Consensus 35 ~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--------~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~ 106 (648)
|....|..+.|.++..+++++|+.|..|+||.+.... ..+..+..|...|++|.|+|+|.++++|+.+|.|.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 4567888999999887789999999999999884321 11345678999999999999999999999999999
Q ss_pred EEeCC--------C-----Cc---eeeE-eeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006360 107 TYDPG--------S-----RR---PSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (648)
Q Consensus 107 IWDl~--------t-----gk---~v~~-~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~ 169 (648)
+|-.. + .+ ..+. ..|...|..++|+||++++++++.|..+++||+..+ +....+. .|...
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~--dh~~y 167 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD--DHEHY 167 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc--ccccc
Confidence 99765 2 11 1111 248899999999999999999999999999999988 4455555 89999
Q ss_pred eeEEEEccCCCeEEEec
Q 006360 170 VSSLCWQRAKPVFIDET 186 (648)
Q Consensus 170 VtsLafspdg~~Las~~ 186 (648)
|..++|.|-++|+++-+
T Consensus 168 vqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKS 184 (434)
T ss_pred cceeecchhhhhhhhhc
Confidence 99999999888887763
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=2.4e-10 Score=121.80 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=128.1
Q ss_pred CccCCCCEEEEEE-CCCcEEEEECC-CCce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 006360 1 MYNCKDEHLASIS-LSGDLILHNLA-SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K 73 (648)
Q Consensus 1 AFSpdG~~Lasgs-~DG~V~IwDl~-sg~~--i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~---~ 73 (648)
+|+|++++|++++ .++.|.+|++. +++. +.... .......++|+|+++.++++...++.|.+||+..... .
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 4789999887664 57889999986 3432 22222 2233456999999995555555689999999964321 1
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceee-------EeeCCCCeEEEEEeCCCCEEEEEEc-CC
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-------CITYEAPFSSLAFIDDDWILTAGTS-NG 144 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs-~Dg~I~IWDl~tgk~v~-------~~~h~~~I~slafsPdG~~Lasgs~-DG 144 (648)
+..+ .+...+.+++|+|+++++++++ .++.|.+||+.+...+. ..........+.|+|||+++++.+. ++
T Consensus 119 ~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 119 IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 2222 2334578889999998886554 56899999997633221 1123445678999999999988876 89
Q ss_pred eEEEEECCCCCCce---EEEeecC----CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 145 RVVFYDIRGKPQPL---TVLRACS----SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 145 ~V~IWDl~s~~~~~---~~l~~~~----h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
.|.+||+......+ ..+.... +......+.|+|++++++++ ...++.|.+|++..
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-----------~~~~~~I~v~~i~~ 259 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-----------DRTASLISVFSVSE 259 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-----------cCCCCeEEEEEEeC
Confidence 99999997421112 2222111 11223468899988776554 23367888888754
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.1e-11 Score=126.65 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=124.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~ 75 (648)
|+.++++|++|+.|.++++|++.. .+.+.....+|...|.|++|+.... ++++|..+++|.+-|+.+.+. +
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qs-i- 140 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQS-I- 140 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeeccccee-e-
Confidence 788999999999999999999853 3556655566778999999997766 899999999999999998874 2
Q ss_pred EeccCC---CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-ee---eEeeCCCCeEEEEEeCC-CCEEEEEEcCCeEE
Q 006360 76 WLKQHS---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PS---SCITYEAPFSSLAFIDD-DWILTAGTSNGRVV 147 (648)
Q Consensus 76 ~l~~H~---~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-~v---~~~~h~~~I~slafsPd-G~~Lasgs~DG~V~ 147 (648)
....|. +.|+.+..+|..+.|++.+.++.|.+||.+... .. ..-........+.|+|. ..+|++.+..+-+-
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 233444 489999999999999999999999999998765 22 22245667888999995 56788888888899
Q ss_pred EEECCCCCCc
Q 006360 148 FYDIRGKPQP 157 (648)
Q Consensus 148 IWDl~s~~~~ 157 (648)
+||++....+
T Consensus 221 ~~D~R~~~~~ 230 (609)
T KOG4227|consen 221 VFDRRMQARP 230 (609)
T ss_pred ceeeccccch
Confidence 9999976443
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=1.8e-10 Score=119.72 Aligned_cols=185 Identities=14% Similarity=0.215 Sum_probs=137.4
Q ss_pred EEEEEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCCC
Q 006360 8 HLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHSA 82 (648)
Q Consensus 8 ~Lasgs~D--G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~---~H~~ 82 (648)
++|..+.+ ..+++++++.+..++++.- ...|-+|.++.+ .|+.+-.+ .|+|||++.-+. ++.+. .+..
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--pt~IL~VrmNr~---RLvV~Lee-~IyIydI~~Mkl-LhTI~t~~~n~~ 130 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIFF--PTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKL-LHTIETTPPNPK 130 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEec--CCceEEEEEccc---eEEEEEcc-cEEEEeccccee-ehhhhccCCCcc
Confidence 34444443 4599999988888888873 356777888765 35554443 399999988774 44443 3555
Q ss_pred CeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCe-EEEEECCCCCCce
Q 006360 83 PTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPL 158 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs--~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~-V~IWDl~s~~~~~ 158 (648)
.+.++.++..+.+++.-+ ..|.|.+||+.+-+.+..+ .|++.+.|++|+++|.+||+++..|+ |+||++.++.+ +
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-l 209 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-L 209 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-e
Confidence 577777777777888643 3578999999999988887 59999999999999999999999998 89999998844 3
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
..++.......|.+++|++++.+|++. +..++|.+|.+....
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~s------------S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAAS------------SNTETVHIFKLEKVS 251 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEe------------cCCCeEEEEEecccc
Confidence 444433335678999999987766555 457899999876544
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=6.5e-11 Score=135.45 Aligned_cols=197 Identities=18% Similarity=0.272 Sum_probs=141.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC--CCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECC-C--CC-cee
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTT-G--RS-PKV 74 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~--~~~V~~Vaf-spdg~~lLaSgs~Dg~V~IWDl~-t--~~-~~v 74 (648)
|+|=...+++++..-.|.|||.+.++.+..|..+. ...|+.+++ +.++..++++|+.||.|+||+-- . ++ ..+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 56667788888777789999999999988777532 455777776 44555589999999999999752 2 11 112
Q ss_pred EEecc---C----CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEeC-CCCEEEEEEcCC
Q 006360 75 SWLKQ---H----SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFID-DDWILTAGTSNG 144 (648)
Q Consensus 75 ~~l~~---H----~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h--~~~I~slafsP-dG~~Lasgs~DG 144 (648)
..+.+ + .+.=.-++|.....+|+++|.-..|+|||....+.+.-+.. ..-|+++.-+- .|++|++|..||
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence 22221 1 11114468888666777777788999999998887776643 34455554432 479999999999
Q ss_pred eEEEEECCCCCC--ceEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 145 RVVFYDIRGKPQ--PLTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 145 ~V~IWDl~s~~~--~~~~l~~~~h~~~--VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
.|++||.+.... .+.+.+ .|... |..+.+.+.|- .-+++++.||.|++||+|+.
T Consensus 1232 svRvyD~R~a~~ds~v~~~R--~h~~~~~Iv~~slq~~G~-----------~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYR--EHNDVEPIVHLSLQRQGL-----------GELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceEEeecccCCccccceeec--ccCCcccceeEEeecCCC-----------cceeeeccCCeEEEEecccC
Confidence 999999997543 555666 55555 99999988531 15788889999999999985
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=3.8e-11 Score=124.84 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=136.1
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC------CCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q 006360 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT------GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 36 ~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~------t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWD 109 (648)
|.+.|+++.|+.+++ +|++|++|..+++|.+. +.++....-..|...|.|++|.-...++++|..+++|.+.|
T Consensus 55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 778899999999987 89999999999999984 33332222334568899999999889999999999999999
Q ss_pred CCCCceeeEeeCCC---CeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 110 PGSRRPSSCITYEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 110 l~tgk~v~~~~h~~---~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
+.+.+.+.++.|.. .|..+..+|-.+.|++.+.+|.|.+||.+....+...++..........+.|+|..
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~------- 206 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET------- 206 (609)
T ss_pred cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC-------
Confidence 99999888887655 89999999999999999999999999999876566666655566778889999853
Q ss_pred cCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 187 TCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 187 ~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
-.++++.+..+-+.+||.++.+.
T Consensus 207 ----P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 207 ----PALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred ----ceeEEeccccCCCCceeeccccc
Confidence 33455556678899999997553
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.31 E-value=5.5e-11 Score=123.45 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=117.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCC--CCCcEEEEEEccCCCeEEEEE-eCCCeEEEEECCCCCceeEEeccCCC
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTA-GDDGTLHLWDTTGRSPKVSWLKQHSA 82 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~--~~~~V~~Vafspdg~~lLaSg-s~Dg~V~IWDl~t~~~~v~~l~~H~~ 82 (648)
.++|+++-.+ .|+|||+++++.+.++... +...+.++.++..+.++.+=+ -..|.|+|||..+-++ +..+..|++
T Consensus 97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~ 174 (391)
T KOG2110|consen 97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINAHKG 174 (391)
T ss_pred cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEecCC
Confidence 4566666554 5999999999999988754 344455555555554333323 3468999999988775 678889999
Q ss_pred CeEEEEEccCCCEEEEEeCCC-eEEEEeCCCCceeeEee---CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 83 PTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs~Dg-~I~IWDl~tgk~v~~~~---h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
.+.|++|+++|.+||+++..| .||++++.+|+.+..+. ....|.+++|+||+.+|++.+..++|+||.+..
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999999 57899999999988885 345688999999999999999999999999875
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.2e-11 Score=137.87 Aligned_cols=193 Identities=12% Similarity=0.217 Sum_probs=141.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEecc
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQ 79 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v~~l~~ 79 (648)
|.....+|+++|.-..|+|||.....++..+.......|+++.-+-.+.++|++|..||.|++||.+... ..+...+.
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 3334445555555778999999888888877765666677666554444599999999999999996543 35777889
Q ss_pred CCCC--eEEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeEe---e---CCCCeEEEEEeCCCCEEEEEEcCCeEEEEE
Q 006360 80 HSAP--TAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI---T---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 80 H~~~--V~slafsPdg~-~LaSgs~Dg~I~IWDl~tgk~v~~~---~---h~~~I~slafsPdG~~Lasgs~DG~V~IWD 150 (648)
|.+. |..+.+.+.|. .|++|+.||.|++||++.......+ . ..+.++++..+++..+||+|+. +.|+||+
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 9988 99999998654 5999999999999999984222211 2 2346999999999999999998 8999999
Q ss_pred CCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 151 IRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 151 l~s~~~~~~~l~~~-----~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
+.+... ..++.+ ...+.+.|++|||....+ +.|+.|..|.||...
T Consensus 1332 ~~G~~l--~~~k~n~~F~~q~~gs~scL~FHP~~~ll------------AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1332 LSGEQL--NIIKYNPGFMGQRIGSVSCLAFHPHRLLL------------AAGSADSTVSIYSCE 1381 (1387)
T ss_pred cChhhh--cccccCcccccCcCCCcceeeecchhHhh------------hhccCCceEEEeecC
Confidence 987532 222211 234668999999954444 444567888887543
No 201
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.5e-10 Score=124.36 Aligned_cols=178 Identities=15% Similarity=0.198 Sum_probs=123.4
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~D---G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg--~V~IWDl~t~~~~v~ 75 (648)
+|+|||++|+..+.+ ..|++||+.+++... +.. ....+...+|+|||+.++++...++ .|++||+.++. ..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~-~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 280 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN-FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LS 280 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eE
Confidence 589999999876544 369999998776543 222 2233446899999996666766665 58888998876 34
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-C--eEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~D---g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-G--~V~IW 149 (648)
.+..+........|+||++.|+..+.. ..|++||+.+++...............|+|||++|+....+ + .|.+|
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 556666667778999999988776643 26888899888755443323334567899999999877653 3 58899
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~ 187 (648)
|+.++. ...+.. ........|+|||++++....
T Consensus 361 dl~tg~--~~~lt~---~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 361 DLQRGS--VRILTD---TSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred ECCCCC--EEEccC---CCCCCCceECCCCCEEEEEEe
Confidence 998763 233332 223335689999988877643
No 202
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5e-10 Score=124.94 Aligned_cols=177 Identities=14% Similarity=0.182 Sum_probs=119.5
Q ss_pred CccCCCCEEEEEECC-C--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006360 1 MYNCKDEHLASISLS-G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~D-G--~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~--V~IWDl~t~~~~v~ 75 (648)
+|+|||++|+..+.+ + .|++||+.+++... +.. ........+|+||++.++++...++. |++||+.++. ..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~ 299 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT 299 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE
Confidence 489999998876543 2 58999998776533 221 12233457999999977777777775 7778887776 44
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeC-CC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-C--eEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~-Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-G--~V~IW 149 (648)
.+..+...+...+|+||++.|+..+. ++ .|+++|+.+++..............+|+|||++|+..+.+ + .|.++
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 55666666788999999998877654 23 6888898888765443233334567899999998876653 3 46667
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
|+.++. ...+.. ........|+|||++|+...
T Consensus 380 dl~~g~--~~~lt~---~~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 380 DLETGA--MQVLTS---TRLDESPSVAPNGTMVIYST 411 (448)
T ss_pred ECCCCC--eEEccC---CCCCCCceECCCCCEEEEEE
Confidence 877763 233331 11233458999998877653
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.29 E-value=7.5e-11 Score=132.62 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=143.1
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCce-----eEEEeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCcee
Q 006360 2 YNCKD-EHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKV 74 (648)
Q Consensus 2 FSpdG-~~Lasgs~DG~V~IwDl~sg~~-----i~~l~~~~~~~V~~Vafspdg~-~lLaSgs~Dg~V~IWDl~t~~~~v 74 (648)
|+|.. .+|+.|..+|.|.+||+..+.. +......|...|..+.|..+.. .-|++++.||.|+.|+++.-....
T Consensus 250 f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 250 FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 56644 5778889999999999987654 2334456788899999976432 248888899999999986433211
Q ss_pred E----Eec-------cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC---Cc-----ee-eEeeCCCCeEEEEEeCC
Q 006360 75 S----WLK-------QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS---RR-----PS-SCITYEAPFSSLAFIDD 133 (648)
Q Consensus 75 ~----~l~-------~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~t---gk-----~v-~~~~h~~~I~slafsPd 133 (648)
. ... .....+++++|.+ +-..++.|+.+|.|..-+... +. .+ ....|.+.|.++.++|-
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 1 001 1224689999999 788899999999888744332 22 11 22248999999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 134 G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
+..++..+.|.+|+||.......|+..+. .+...|++++|+|. ...+++++..||.|.+||++....
T Consensus 410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSpt-----------rpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 410 YPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPT-----------RPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred ccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCc-----------CceEEEEEcCCCceehhhhhcccc
Confidence 77666666699999999884445555444 57778999999995 334566667799999999986554
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.2e-10 Score=121.78 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=151.1
Q ss_pred CEEEEEECCCcEEEEECCCCc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccC
Q 006360 7 EHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~----~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D--g~V~IWDl~t~~~~v~~l~~H 80 (648)
..|++|-.+|.+.+|..+.+. .+..+.. ...+..|.-.+...+++++|+.. ..+.|||+...+. +..-+.-
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKNv 192 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKNV 192 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccCC
Confidence 467788889999999987443 3334442 24455677777777788889998 8899999987643 2221111
Q ss_pred ---------CCCeEEEEEccC--CCEEEEEeCCCeEEEEeCCCCc-eeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEE
Q 006360 81 ---------SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRR-PSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVV 147 (648)
Q Consensus 81 ---------~~~V~slafsPd--g~~LaSgs~Dg~I~IWDl~tgk-~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~ 147 (648)
.-+++++.|.+. ...|++++.-+.|++||.+.++ ++..+. .+.+|+++...|+|++|++|..-|.+.
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 124678999886 8899999999999999999764 677774 678999999999999999999999999
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 148 IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
.||++.++.....+. +..+.|.+|..+|.+++++++ +.|+.|+|+|+........+..
T Consensus 273 ~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las~------------GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLASC------------GLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred eecccCceeeccccC--CccCCcceEEEcCCCceEEee------------ccceeEEEeecccchhhhhhhh
Confidence 999999854444344 778999999999977777666 5599999999988665554444
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.7e-10 Score=113.95 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=127.4
Q ss_pred CCEEEEEECCCcEEEEECCCCce------eEEEeC------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006360 6 DEHLASISLSGDLILHNLASGAK------AAELKD------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~------i~~l~~------~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~ 73 (648)
+++|++|+ ||.|+-|.++.... +.+++. ..-..|+++...|..+.+|+ ++.|+.++.||+++++.
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i- 148 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRI- 148 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEE-
Confidence 34566554 59999998864322 112211 12345788888888775554 45889999999999984
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-----------CCCCeEEEEEeCCCCEEEEEEc
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----------YEAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-----------h~~~I~slafsPdG~~Lasgs~ 142 (648)
...+++|++.|.++.--.....|++|++||++++||.++++++.++. ...+|-+++.+. .++++|+.
T Consensus 149 ~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGgG 226 (325)
T KOG0649|consen 149 QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGGG 226 (325)
T ss_pred EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecCC
Confidence 57899999999999986666789999999999999999999998874 123466666654 48887765
Q ss_pred CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 143 DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
..+.+|+++.. .+..++. -...|..+.|..| .++.++..+.|.-|.+.
T Consensus 227 -p~lslwhLrss-e~t~vfp---ipa~v~~v~F~~d--------------~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 227 -PKLSLWHLRSS-ESTCVFP---IPARVHLVDFVDD--------------CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred -CceeEEeccCC-CceEEEe---cccceeEeeeecc--------------eEEEeccccceeeeeec
Confidence 45999999987 3445555 3456777777643 34444556667766553
No 206
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.7e-11 Score=131.74 Aligned_cols=188 Identities=17% Similarity=0.303 Sum_probs=145.1
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006360 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 1 AFSpdG~~Lasgs~D---G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l 77 (648)
.|+.+|+||++...+ ..|.|+++...+...-|.. ..+.|.++.|+|... +|+.+.. ..|+|||+..... ++.+
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqel-vKkL 603 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQEL-VKKL 603 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHH-HHHH
Confidence 378899999987554 4699999977666555543 456778899999988 5555554 7899999977553 5556
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-ceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC---
Q 006360 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR--- 152 (648)
Q Consensus 78 ~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg-k~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~--- 152 (648)
......|..++.+|.|..|+.++.|+.++.+|+.-. ++.+.+ -|...++.++|++.-.++++|+.||.+.||.-.
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 666678999999999999999999999999999754 455555 488899999999999999999999999998543
Q ss_pred ---CC--CCceEEEeecCCCCC----eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcC
Q 006360 153 ---GK--PQPLTVLRACSSSEA----VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (648)
Q Consensus 153 ---s~--~~~~~~l~~~~h~~~----VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvW 206 (648)
.. --+++.+. +|... |..+.|||...+|+++ +.|++|++|
T Consensus 684 Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsA------------GAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSA------------GADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeecc--CceeecccceEeecccCCCceEEec------------CCCceEEee
Confidence 11 12345555 56554 8899999976666555 558899988
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.26 E-value=5.4e-12 Score=141.12 Aligned_cols=191 Identities=17% Similarity=0.237 Sum_probs=139.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
+|...|.+|++|+.|..|+||..+++.++..+.+ |...|+.++.+.+.- ++++++.|..|++|.+..+.+ +..+.+|
T Consensus 197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~p-vsvLrgh 273 (1113)
T KOG0644|consen 197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAP-VSVLRGH 273 (1113)
T ss_pred eeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhh-hhhhcccCceEEEEecCCCch-HHHHhcc
Confidence 3677899999999999999999999999999997 777889999987765 889999999999999999886 7889999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-Cc-------------eeeE--ee---------------CCCCeEEEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RR-------------PSSC--IT---------------YEAPFSSLA 129 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t-gk-------------~v~~--~~---------------h~~~I~sla 129 (648)
++.|++|+|+|-. +.+.||++++||.+- .. .+.. +. ....+.+++
T Consensus 274 tgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~ 349 (1113)
T KOG0644|consen 274 TGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA 349 (1113)
T ss_pred ccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence 9999999999944 778999999999871 10 0000 00 011122333
Q ss_pred EeCCCCEE-----------EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006360 130 FIDDDWIL-----------TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (648)
Q Consensus 130 fsPdG~~L-----------asgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s 198 (648)
|...+-.+ ++.-.+..+++|++.++ +....+. +|...+..+.++|-. ..+..+..
T Consensus 350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~--ghsd~~yvLd~Hpfn-----------~ri~msag 415 (1113)
T KOG0644|consen 350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLM--GHSDEVYVLDVHPFN-----------PRIAMSAG 415 (1113)
T ss_pred hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhc--ccccceeeeeecCCC-----------cHhhhhcc
Confidence 33332223 33334556788888876 3344444 789999999999953 33445556
Q ss_pred CCCeEEcCCCCCCC
Q 006360 199 VGDSILMPDPLPSV 212 (648)
Q Consensus 199 ~D~~IkvWDlr~~~ 212 (648)
.||...|||+-...
T Consensus 416 ~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGI 429 (1113)
T ss_pred CCCceEeeecccCC
Confidence 67888888775433
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.2e-10 Score=129.11 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=117.1
Q ss_pred CccCCCCEEEEEE-CCCcEE--EEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006360 1 MYNCKDEHLASIS-LSGDLI--LHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 1 AFSpdG~~Lasgs-~DG~V~--IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l 77 (648)
+|+|||++|+.+. .+|.+. +||+.+++. ..+.. +...+..+.|+||++.+++++..++...||++.........+
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 5899999888764 677654 556655554 44544 444567789999999666666678888888774322222333
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC-CCC
Q 006360 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG-KPQ 156 (648)
Q Consensus 78 ~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s-~~~ 156 (648)
.+.. .++.|+||+++|+.++.++ +.+||+.+++....... .....+.|+|||++|+.++.++.+.+|++.. ...
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 4443 5678999999999888766 56699998876543322 2345688999999999999999888777632 112
Q ss_pred ceEEEeecCCCCCeeEEEEcc
Q 006360 157 PLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafsp 177 (648)
..+.+. .|.+.+..++|+|
T Consensus 407 ~~~~l~--~~~g~~~~p~wsp 425 (429)
T PRK01742 407 FKARLP--GSDGQVKFPAWSP 425 (429)
T ss_pred ceEEcc--CCCCCCCCcccCC
Confidence 344444 6778889999998
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.6e-11 Score=130.62 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=128.7
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc--CCCEEEEEeCCCeEEE
Q 006360 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYT 107 (648)
Q Consensus 30 ~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP--dg~~LaSgs~Dg~I~I 107 (648)
.++.+ |.+.|+|++|+.+|. +|++|++|-.+.|||.-..+.....-.+|...|.++.|-| +..++++|..|..|++
T Consensus 44 ~eL~G-H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTG-HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhcc-ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45665 788999999999999 9999999999999999877765566689999999999999 6788999999999999
Q ss_pred EeCCCCc----------eeeEe-eCCCCeEEEEEeCCC-CEEEEEEcCCeEEEEECCCCCCceE-------EEeecCCCC
Q 006360 108 YDPGSRR----------PSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLT-------VLRACSSSE 168 (648)
Q Consensus 108 WDl~tgk----------~v~~~-~h~~~I~slafsPdG-~~Lasgs~DG~V~IWDl~s~~~~~~-------~l~~~~h~~ 168 (648)
+|+...+ ....+ .|...|..++-.|++ +.+.++++||+|+-||++....+.. ........-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9997421 12222 378888899999988 7889999999999999997421111 111011122
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 169 ~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
...++..+|.. ..+++.|+.|--.++||.|...+
T Consensus 202 elk~ltisp~r-----------p~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 202 ELKCLTISPSR-----------PYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred eeeeeeecCCC-----------CceEEecCCCchhhhhhhhhhcc
Confidence 35677777753 33444455688899999664443
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.22 E-value=1.5e-10 Score=118.34 Aligned_cols=157 Identities=9% Similarity=0.186 Sum_probs=125.0
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CC
Q 006360 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SR 113 (648)
Q Consensus 37 ~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~-tg 113 (648)
...|+|.+|++|.. .++.+...+.|.||...+.. ...+.+..|...|++|+|+|..+.|++|+.|..-++|... .+
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46899999999988 79999999999999986654 4478899999999999999999999999999999999984 44
Q ss_pred c---eeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 006360 114 R---PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCK 189 (648)
Q Consensus 114 k---~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~-~~~l~~~~h~~~VtsLafspdg~~Las~~~~~ 189 (648)
+ .+.++.+....+++.|+|.++.+++|+....|.||-+.....- +.......+...|+++.|+|++-.+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl------- 161 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL------- 161 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee-------
Confidence 3 2334478999999999999999999999999999988764321 1111112567889999999955444
Q ss_pred CCeEEEEeeCCCeEEcC
Q 006360 190 AETALLGGAVGDSILMP 206 (648)
Q Consensus 190 ~~~~lvs~s~D~~IkvW 206 (648)
..|+.|+.++||
T Consensus 162 -----aaGs~D~k~rVf 173 (361)
T KOG1523|consen 162 -----AAGSTDGKCRVF 173 (361)
T ss_pred -----cccccCcceeEE
Confidence 444557766666
No 211
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.22 E-value=6.4e-11 Score=118.19 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=110.4
Q ss_pred EEEEEeCCCeEEEEECCCCCce---------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--cee--eE
Q 006360 52 LLVTAGDDGTLHLWDTTGRSPK---------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPS--SC 118 (648)
Q Consensus 52 lLaSgs~Dg~V~IWDl~t~~~~---------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg--k~v--~~ 118 (648)
++++|..+|.|.+||+.++... +.....|..+|.++.|.+.-..=++++.+..+..|.+... .+. ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 5667788999999999876321 2344578999999999885555567788888889987643 221 12
Q ss_pred ee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006360 119 IT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (648)
Q Consensus 119 ~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~ 197 (648)
+. ..-.|..+.+.||++++|+++.|+.|+||+.++. +++.++. .|...|.+++|+|+...+ ..+
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagvn~vAfspd~~lm------------Aaa 311 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGVNAVAFSPDCELM------------AAA 311 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhh--hhhcceeEEEeCCCCchh------------hhc
Confidence 22 3446788999999999999999999999999998 6788888 688999999999964444 445
Q ss_pred eCCCeEEcCCC
Q 006360 198 AVGDSILMPDP 208 (648)
Q Consensus 198 s~D~~IkvWDl 208 (648)
+.|..|-+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 77999999986
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.20 E-value=4.5e-11 Score=126.92 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=162.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|-|..=+|++++..|.++..|+.+|+.+..+.. ..+.+..++-+|.+. ++-+|...|+|.+|.....++ +..+..|.
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skeP-LvKiLcH~ 293 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEP-LVKILCHR 293 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccc-eEEEcCCCceEEecCCCCcch-HHHHHhcC
Confidence 445555788899999999999999999988875 445677788999887 899999999999999998886 45677899
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEEC-CCC-CCceE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI-RGK-PQPLT 159 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl-~s~-~~~~~ 159 (648)
++|.+|++.++|+|+++.+.|..|+|||++.-..+..+....+...++|+..| .||++- ...|.||.= -.. .....
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~-G~~v~iw~d~~~~s~~~~~ 371 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSY-GDHVQIWKDALKGSGHGET 371 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeec-CCeeeeehhhhcCCCCCCc
Confidence 99999999999999999999999999999988766655556677888888665 444444 446999943 221 11112
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
.+-.+...+.|..+.|.|-..+|..+...+-..+||-|+.|-..--|...||.+.
T Consensus 372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetr 426 (545)
T KOG1272|consen 372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETR 426 (545)
T ss_pred chhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhh
Confidence 2222234568999999998888888877777788999988877777777777654
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3.2e-09 Score=117.98 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=117.0
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCC
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs--~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~ 94 (648)
.|++||. .+.....+.. +...+...+|+|||+.++++.. .+..|++||+.++.. ..+..+.+.+.+.+|+|||+
T Consensus 183 ~l~~~d~-dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQ-DGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECC-CCCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 7889997 4555555654 5567888999999995544433 246899999988763 44556667788999999998
Q ss_pred EEE-EEeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006360 95 IIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 95 ~La-Sgs~Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~-DG--~V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
.|+ +.+.++ .|++||+.+++......+........|+|||+.|+..+. +| .|++||+.+.. .+.+. .+.+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt--~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRIS--FGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEee--cCCC
Confidence 775 455555 488889998877665556666778999999999887764 33 68888987652 23333 2345
Q ss_pred CeeEEEEccCCCeEEEe
Q 006360 169 AVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (648)
.+....|+|+|++|+..
T Consensus 335 ~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFT 351 (435)
T ss_pred cccCeEECCCCCEEEEE
Confidence 56778999999988776
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=3.7e-09 Score=108.26 Aligned_cols=178 Identities=10% Similarity=0.129 Sum_probs=129.2
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC--CCeEEEEEccCC
Q 006360 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS--APTAGISFSSDD 93 (648)
Q Consensus 16 G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~--~~V~slafsPdg 93 (648)
+.|.|||=...+++.++. -...|..|++.++ .|++. ..+.|+||.....-..++.+.... ....+++-..+.
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 479999966677887776 4578889999876 34443 458899999975433344443322 223333333244
Q ss_pred CEEEE-EeCCCeEEEEeCCCCce---eeEeeCCCCeEEEEEeCCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCC
Q 006360 94 KIIAS-VGLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 94 ~~LaS-gs~Dg~I~IWDl~tgk~---v~~~~h~~~I~slafsPdG~~Lasgs~DG~-V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
.+|+. |-.-|.|.|.|+...+. ..+..|...|.|++++-+|..||+++..|+ |+|||..++. ++..++......
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~-~l~E~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT-LLQELRRGVDRA 227 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc-EeeeeecCCchh
Confidence 44544 44568999999987655 555579999999999999999999999998 8999999984 445555445567
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 169 ~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
.|++|+|+|+..+|++. ++.+++.||.++...
T Consensus 228 ~iy~iaFSp~~s~Lavs------------SdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVS------------SDKGTLHIFSLRDTE 259 (346)
T ss_pred eEEEEEeCCCccEEEEE------------cCCCeEEEEEeecCC
Confidence 89999999987777665 558899999887644
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.7e-09 Score=118.37 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=119.6
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCC
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs--~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~ 94 (648)
.|.+||.. +.....+.. +...+...+|+|||+.++++.. .+..|++||+.+++. ..+......+..++|+|||+
T Consensus 180 ~l~~~d~d-g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 69999975 433344443 4457788999999995554432 345799999987763 33334444456789999999
Q ss_pred EEEEE-eCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCCCC
Q 006360 95 IIASV-GLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 95 ~LaSg-s~Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-G--~V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
.|+.. +.++ .|++||+.+++......+...+....|+|||+.|+..+.+ + .|+++|+.++. ...+. .+..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt--~~~~ 331 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRIT--WEGS 331 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEee--cCCC
Confidence 88865 4444 5999999998877666666678899999999998877754 3 45555776552 23333 2344
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 169 ~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
.+...+|+|||++++...... ....|.+||+..
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~---------g~~~I~~~dl~~ 364 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNG---------GQQHIAKQDLAT 364 (429)
T ss_pred CccCEEECCCCCEEEEEEccC---------CCceEEEEECCC
Confidence 566789999999887753211 123566677643
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.19 E-value=1.4e-10 Score=124.94 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=80.9
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee
Q 006360 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS 117 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~ 117 (648)
..|+.++|++||+ +||+.+.||.++|||..+.+. +-.++..-+...|++|+|||++|++|++|.-|.+|.+..++.+.
T Consensus 291 g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 291 GSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred ccccceeEcCCCc-eEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 4677899999998 899999999999999988763 34455556779999999999999999999999999999988775
Q ss_pred E-eeCCCCeEEEEEeC
Q 006360 118 C-ITYEAPFSSLAFID 132 (648)
Q Consensus 118 ~-~~h~~~I~slafsP 132 (648)
. .+|+.+|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 5 47999999999984
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=119.12 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=138.5
Q ss_pred ccCCCCEE-EEEECCCcEEEEECCCCceeEE----------------------------EeCC------C----CCcEEE
Q 006360 2 YNCKDEHL-ASISLSGDLILHNLASGAKAAE----------------------------LKDP------N----EQVLRV 42 (648)
Q Consensus 2 FSpdG~~L-asgs~DG~V~IwDl~sg~~i~~----------------------------l~~~------~----~~~V~~ 42 (648)
.+|||+|+ ++|...-.|++||+.+..+-.+ +..| + ....++
T Consensus 59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRD 138 (703)
T KOG2321|consen 59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRD 138 (703)
T ss_pred ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcc
Confidence 47999976 5667778999999965422110 0000 0 011123
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee--
Q 006360 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-- 120 (648)
Q Consensus 43 Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-- 120 (648)
++++.-.. =|+.++....|+-+++..++- +.-+....+.+++|..++.+.+|++|+.||.|.+||.++...+..+.
T Consensus 139 m~y~~~sc-Dly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 139 MKYHKPSC-DLYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccCCCc-cEEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 34433222 244555566788888887763 45566666889999999999999999999999999999887666553
Q ss_pred -----CCC-----CeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 121 -----YEA-----PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 121 -----h~~-----~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
|.+ .|+++.|+.+|-.+++|+.+|.|+|||++.... + .+..++..-+|..+.|.+. .+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l-~~kdh~~e~pi~~l~~~~~----------~~ 284 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-L-LVKDHGYELPIKKLDWQDT----------DQ 284 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-e-eecccCCccceeeeccccc----------CC
Confidence 222 399999999999999999999999999999843 3 3444566788999999874 12
Q ss_pred CeEEEEeeCCCeEEcCCCCCCCCcc
Q 006360 191 ETALLGGAVGDSILMPDPLPSVTTS 215 (648)
Q Consensus 191 ~~~lvs~s~D~~IkvWDlr~~~~~s 215 (648)
...+++.. ...++|||-....+-.
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGKPMA 308 (703)
T ss_pred CceEEecc-hHHhhhcccccCCcee
Confidence 23333333 6789999987665543
No 218
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.4e-09 Score=117.16 Aligned_cols=198 Identities=17% Similarity=0.098 Sum_probs=149.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeC--CCCCcEEEEEEc------c-------------CCCeEEEEEeCCCe
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYS------R-------------NSRHLLVTAGDDGT 61 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~--~~~~~V~~Vafs------p-------------dg~~lLaSgs~Dg~ 61 (648)
.+-..++|....||.++|||...++...+|.. +..+.+.+..|. | .+..+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45568999999999999999999988877763 224445555553 1 12336778889999
Q ss_pred EEEEECCCCCceeEEe-ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEE
Q 006360 62 LHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA 139 (648)
Q Consensus 62 V~IWDl~t~~~~v~~l-~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Las 139 (648)
|.+|++..++...... ..|.+.|+++.++.+-..|.+++.|+.+.+|+....+.++.+. ....+.+++.+|||.++++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999998887543333 5799999999999999999999999999999999999888774 5566889999999999998
Q ss_pred EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe-eCCCeEEcCCCCCCC
Q 006360 140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG-AVGDSILMPDPLPSV 212 (648)
Q Consensus 140 gs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~-s~D~~IkvWDlr~~~ 212 (648)
++. .|++||+.+++ .+..+.+|.++|.++.|.-+ . ....+.+++++ ..+..+.+|-+....
T Consensus 162 as~--~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~-----~--~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 162 ASR--QIKVLDIETKE---VVITFTGHGSPVRTLSFTTL-----I--DGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred ccc--eEEEEEccCce---EEEEecCCCcceEEEEEEEe-----c--cccccceeeeccccccceeEEEEEccc
Confidence 864 89999999983 33344499999999999765 0 01122333333 346777888666533
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=125.18 Aligned_cols=188 Identities=14% Similarity=0.181 Sum_probs=145.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE---EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV---LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~---Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
+...++.+..++.+.+||...+....++.........+ +-++++. .++++|+.-+.|.+|+...... -..+.+|.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~-p~~l~GHe 175 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNK-PIRLKGHE 175 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCC-cceecccC
Confidence 45678888889999999998777777666432222211 2234443 4788999999999999974443 23689999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~--~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
+.|..+.|+-||.+++++++|..+++|++.+.+... .++|...|..++|.|. .|+++++|.+.++|+..... +.
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~ 251 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LE 251 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--eh
Confidence 999999999999999999999999999999987654 5689999999999988 99999999999999776542 22
Q ss_pred EEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 160 VLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 160 ~l~~~~h~-~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
++. +|. ..|..++..+ +..+.+++..|+.+++||+.-..
T Consensus 252 ~y~--~h~g~~iw~~~~~~------------~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 252 VYD--EHSGKGIWKIAVPI------------GVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hhh--hhhhcceeEEEEcC------------CceEEEeeccCcchhhhhhhccc
Confidence 333 443 4578888776 55667777889999999987544
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.4e-09 Score=117.56 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=113.7
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEccCC
Q 006360 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93 (648)
Q Consensus 16 G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D--g~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg 93 (648)
..|.+||. ++.....+.. +...+...+|+||++.++++...+ ..|++||+.++.. ..+......+.+..|+|||
T Consensus 176 ~~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 35777786 5555555544 456677899999998544443333 4599999988763 3344444566789999999
Q ss_pred CEEE-EEeCCCe--EEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc-CCeEEEEEC--CCCCCceEEEeecCCC
Q 006360 94 KIIA-SVGLDKK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDI--RGKPQPLTVLRACSSS 167 (648)
Q Consensus 94 ~~La-Sgs~Dg~--I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~-DG~V~IWDl--~s~~~~~~~l~~~~h~ 167 (648)
+.|+ +.+.++. |+++|+..+.......+...+....|+|||+.|+..+. +|...||.+ .+.. ...+.. +.
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~--~g 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTF--TG 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEec--CC
Confidence 8886 4566775 45556666554444445555677899999998886654 455566654 4432 233331 22
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 168 ~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
......+|+|||++|+...... .+..|.+||+..
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~---------g~~~I~v~d~~~ 361 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVG---------GAFKLYVQDLAT 361 (427)
T ss_pred CCcCceEECCCCCEEEEEEccC---------CcEEEEEEECCC
Confidence 3445689999999987653211 123677787753
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.12 E-value=2.7e-10 Score=113.79 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=110.9
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEe---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--CceeE-
Q 006360 8 HLASISLSGDLILHNLASGAKAAELK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKVS- 75 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~~i~~l~---------~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~--~~~v~- 75 (648)
+++.|-.+|+|.+||+.++..+..++ ..|.+.|.++.|.+.-. .=++|+.+..+..|.+... ...+.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccc
Confidence 45677889999999998874443332 23677888888875432 2356677778888988432 22121
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
.+.-..-.|..+.+-||++++++++.|+.|++|..++.+++.++. |.+.|.+++|+||.+++|+++.|++|.+|++
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 111122348889999999999999999999999999999998885 8899999999999999999999999999986
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=3e-09 Score=118.15 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=113.2
Q ss_pred CccCCCCEEEE-EECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 006360 1 MYNCKDEHLAS-ISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Las-gs~DG--~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~--V~IWDl~t~~~~v~ 75 (648)
+|+|||+.|+. .+.+| .|++||+.+++.. .+.. +......++|+||++.++++...++. |+++|+.++.. .
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~ 329 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--E 329 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--E
Confidence 48999997764 45555 5999999877653 3443 33344568999999965555555555 66677766653 3
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC---CeEEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg---~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D---G~V~IW 149 (648)
.+..+......++|+|||++|+..+.++ .|++||+.+++.. .+.+........|+|||++|+..+.+ +.|+++
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3333334455789999999998876543 6999999888765 33344345677999999988876653 458888
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
|+.+.. ...+. .+.+.+..++|+|
T Consensus 409 ~~~g~~--~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDGRV--RQRLV--SADGEVREPAWSP 432 (433)
T ss_pred ECCCCc--eEEcc--cCCCCCCCCccCC
Confidence 886542 23333 3456677777776
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.11 E-value=1.6e-10 Score=118.22 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=108.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
.|||+|+++|+.+.- .+.|-|.++-+..+.+.. -+.|.-+.|..|..++|+....|+.|.+|++...+- ...+...
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIdeg 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDEG 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEeccC
Confidence 489999999998765 888999887766554432 233444889999988888889999999999987764 3456777
Q ss_pred CCCeEEEEEccCCCEE-EEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc
Q 006360 81 SAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 81 ~~~V~slafsPdg~~L-aSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~ 142 (648)
.+.+..++|+|||+.| .+...|-.|.+|.+.+.+....--.+..+..++|+|||++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence 7889999999999655 5566688999999998877655544556788999999999888765
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.11 E-value=1.5e-08 Score=103.76 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=111.2
Q ss_pred CCEEEEEECCCcEEEEECC-CCceeEEEeCCC-CCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCc-eeEEeccCC
Q 006360 6 DEHLASISLSGDLILHNLA-SGAKAAELKDPN-EQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSP-KVSWLKQHS 81 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~-sg~~i~~l~~~~-~~~V~~Vafspdg~~lLaS-gs~Dg~V~IWDl~t~~~-~v~~l~~H~ 81 (648)
.++|++. .++.|+||... +-+.++.+.... ...+.+++-+.+.. +|+. |-.-|.|.|-|+..... .-..+..|.
T Consensus 104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~ 181 (346)
T KOG2111|consen 104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD 181 (346)
T ss_pred CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence 4456655 45789999986 455666555322 22333333222222 3333 45679999999965542 135788999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCe-EEEEeCCCCceeeEee---CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~-I~IWDl~tgk~v~~~~---h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
..|.|++.+.+|.++|+++..|+ |+|||..+|..+..+. ....|.|++|+|+..+|++.+..|+|+||.++..
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999995 7899999999998884 4667999999999999999999999999999864
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=3.6e-09 Score=120.10 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=138.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC---CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006360 1 MYNCKDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~s---g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l 77 (648)
++||+++++|+|..||.|.+|.-.. .+...++-..|...|.++.|+++|. +|++|+..|.+.+|.+.+++ .+.+
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~--kqfL 288 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK--KQFL 288 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC--cccc
Confidence 5799999999999999999996322 1222333334677899999999999 89999999999999998887 3567
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee------------CCCCeEEEEEeCCCCEEEEEEcCCe
Q 006360 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTSNGR 145 (648)
Q Consensus 78 ~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~------------h~~~I~slafsPdG~~Lasgs~DG~ 145 (648)
..-.+.|..+.++||+.+.+.+..|+.|.+....+......+. ..+-.+.++++|.-+.++..+..|.
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 7778899999999999999999999999999876654443332 1334577889997778888889999
Q ss_pred EEEEECCCCCCceEEE--eecCC------CCCeeEEEEccCCCeEEEe
Q 006360 146 VVFYDIRGKPQPLTVL--RACSS------SEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 146 V~IWDl~s~~~~~~~l--~~~~h------~~~VtsLafspdg~~Las~ 185 (648)
|.+||+-+.....+.. ....+ .-.++.++.+..|.++++.
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 9999998765432221 11112 2346777777778888774
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.7e-09 Score=113.24 Aligned_cols=166 Identities=12% Similarity=0.139 Sum_probs=132.0
Q ss_pred EEEEEECC--CcEEEEECCCCceeEEEeCCCC--------CcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006360 8 HLASISLS--GDLILHNLASGAKAAELKDPNE--------QVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (648)
Q Consensus 8 ~Lasgs~D--G~V~IwDl~sg~~i~~l~~~~~--------~~V~~Vafspd-g~~lLaSgs~Dg~V~IWDl~t~~~~v~~ 76 (648)
.+++|+.. ..+.|||++..+.+..-+.... -.++++.|.+. ..+.|+++..-+.|++||.+.++..+..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 55668888 8899999988876665443221 12456677664 1347999999999999999877766788
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeE-e-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~-~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
+.--...|.++...|+++.|++|..-+.+..||++.++.... + +..+.|.++..+|.+.+|++++-|..|+|||+.+.
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 887888999999999999999999999999999999987766 3 57899999999999999999999999999999986
Q ss_pred CCceEEEeecCCCCCeeEEEEcc
Q 006360 155 PQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 155 ~~~~~~l~~~~h~~~VtsLafsp 177 (648)
+...+++ ....+++|.+.+
T Consensus 323 kll~kvY----vKs~lt~il~~~ 341 (412)
T KOG3881|consen 323 KLLHKVY----VKSRLTFILLRD 341 (412)
T ss_pred hhhhhhh----hhccccEEEecC
Confidence 3322222 245566666654
No 227
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.8e-08 Score=111.81 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=118.2
Q ss_pred CccCCCCE--EE-EEECC--CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCC-
Q 006360 1 MYNCKDEH--LA-SISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGR- 70 (648)
Q Consensus 1 AFSpdG~~--La-sgs~D--G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg----~V~IWDl~t~- 70 (648)
+|+|||+. ++ +...+ ..|++.++..++... +.. ........+|+|||+.++++...+| .+.+||+..+
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 59999975 32 33333 358888987765433 222 2223345799999996666654433 4455777542
Q ss_pred -CceeEEeccCCCCeEEEEEccCCCEEEEEe-CCCe--EEEEeCCC--CceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-
Q 006360 71 -SPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK--LYTYDPGS--RRPSSCITYEAPFSSLAFIDDDWILTAGTSN- 143 (648)
Q Consensus 71 -~~~v~~l~~H~~~V~slafsPdg~~LaSgs-~Dg~--I~IWDl~t--gk~v~~~~h~~~I~slafsPdG~~Lasgs~D- 143 (648)
.........+...+...+|+|||+.|+..+ .+|. |+++++.. +...........+....|+|||++|+....+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 111222223334456789999999887765 4554 55555542 2222232344567789999999999876543
Q ss_pred --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 144 --G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
..|++||+.+++. ..+. .....+....|+|||++|+..... ..+..|++||+.
T Consensus 349 g~~~I~v~dl~~g~~--~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~---------~g~~~L~~vdl~ 403 (428)
T PRK01029 349 GVRQICVYDLATGRD--YQLT--TSPENKESPSWAIDSLHLVYSAGN---------SNESELYLISLI 403 (428)
T ss_pred CCcEEEEEECCCCCe--EEcc--CCCCCccceEECCCCCEEEEEECC---------CCCceEEEEECC
Confidence 4699999987742 3333 223456789999999887764221 123456666664
No 228
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.4e-08 Score=109.22 Aligned_cols=190 Identities=15% Similarity=0.096 Sum_probs=126.1
Q ss_pred CccCCCCE-EEEEECC---CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCcee
Q 006360 1 MYNCKDEH-LASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKV 74 (648)
Q Consensus 1 AFSpdG~~-Lasgs~D---G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D--g~V~IWDl~t~~~~v 74 (648)
.|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.++++.+.+ ..|+++|+.++. .
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~--~ 269 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT--L 269 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--E
Confidence 48999985 6654443 469999998876654333 334455678999999777776554 468888887776 3
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEeCC-C--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC--------
Q 006360 75 SWLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-------- 143 (648)
Q Consensus 75 ~~l~~H~~~V~slafsPdg~~LaSgs~D-g--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-------- 143 (648)
..+..+........|+|||+.|+..+.. + .|+++|+.+++..+....... ...|+|||++|+.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence 4455554434556899999988777643 2 789999988876554432222 24899999998876653
Q ss_pred -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006360 144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (648)
Q Consensus 144 -G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~ 201 (648)
..|+++|+.++. .+.+.. ........|+|||+.|+......+...+..-..|+
T Consensus 348 ~~~I~v~d~~~g~--~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 348 TFNLYLISTNSDY--IRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcEEEEEECCCCC--eEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888988763 234432 22344689999999887765544444444444444
No 229
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.4e-10 Score=117.88 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=111.7
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee
Q 006360 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120 (648)
Q Consensus 41 ~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~ 120 (648)
.+|+|+.+|. .+++++.||+++||+...... +.....|...|.++.|+||++.|++.+.| ..++||+.++.++....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 5689999988 899999999999999766654 45677888999999999999999999999 89999999997665543
Q ss_pred ---CCCCeEEEEEeCCC---CEEEE--EEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 121 ---YEAPFSSLAFIDDD---WILTA--GTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 121 ---h~~~I~slafsPdG---~~Las--gs~DG~V~IWDl~s~~~--~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
....+..+.|+.|+ .+.+. ...-+.|..||+..... ..+..+.......|.+++.+.+|++++.++.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~--- 301 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM--- 301 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc---
Confidence 34456778888776 33222 22345577777654322 1111111123467999999999999888733
Q ss_pred CeEEEEeeCCCeEEcCCCC
Q 006360 191 ETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 191 ~~~lvs~s~D~~IkvWDlr 209 (648)
||.|-|++..
T Consensus 302 ---------dGsVai~~~~ 311 (398)
T KOG0771|consen 302 ---------DGSVAIYDAK 311 (398)
T ss_pred ---------CCcEEEEEec
Confidence 5666555544
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.07 E-value=2.3e-08 Score=109.88 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=112.0
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEccCCC
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D--g~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~ 94 (648)
.|+++|.. +.....+.. +...+...+|+|+++.++++...+ ..|++||+.++.. ..+..+...+.+++|+||++
T Consensus 171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 58888874 444455554 444567789999999554443333 5799999988753 33445566677899999998
Q ss_pred EEEEE-eCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCCCC
Q 006360 95 IIASV-GLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 95 ~LaSg-s~Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-G--~V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
.|+.. +.++ .|++||+.+++......+........|+|||++|+..+.. + .|++||+.+.+ ...+. .+..
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~--~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLT--FRGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEee--cCCC
Confidence 77654 4443 6999999988765555555555678999999988876643 3 58888887653 22333 3456
Q ss_pred CeeEEEEccCCCeEEEe
Q 006360 169 AVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (648)
.+..+.|+|+|++++..
T Consensus 323 ~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFV 339 (417)
T ss_pred CccCeEECCCCCEEEEE
Confidence 67788999998887776
No 231
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1e-08 Score=113.78 Aligned_cols=173 Identities=18% Similarity=0.204 Sum_probs=111.5
Q ss_pred CccCCCCEEEEEEC-CC--cE--EEEECCCC--ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCC
Q 006360 1 MYNCKDEHLASISL-SG--DL--ILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRS 71 (648)
Q Consensus 1 AFSpdG~~Lasgs~-DG--~V--~IwDl~sg--~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IW--Dl~t~~ 71 (648)
+|+|||++|+..+. +| .+ .+|++..+ .....+...........+|+|||+.++++...+|...|| ++....
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 48999998887653 23 34 44676543 122233322223345579999999666666566755555 554221
Q ss_pred ceeEEeccCCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc---CCe
Q 006360 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGR 145 (648)
Q Consensus 72 ~~v~~l~~H~~~V~slafsPdg~~LaSgs~D---g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~---DG~ 145 (648)
.....+..+...+....|+|||++|+..+.+ ..|++||+.+++..........+....|+|||++|+.... +..
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence 1234455555667889999999999877654 3799999999887655544456778999999998886543 356
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 146 V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
|++||+.+.+. ..+. ...+.+...+|+|
T Consensus 397 L~~vdl~~g~~--~~Lt--~~~g~~~~p~Ws~ 424 (428)
T PRK01029 397 LYLISLITKKT--RKIV--IGSGEKRFPSWGA 424 (428)
T ss_pred EEEEECCCCCE--EEee--cCCCcccCceecC
Confidence 88999987632 2222 2345566777876
No 232
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5.8e-09 Score=118.40 Aligned_cols=196 Identities=13% Similarity=0.159 Sum_probs=140.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee---EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CCceeE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVS 75 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i---~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t---~~~~v~ 75 (648)
+++.|++.+.. .+..+++|++.++... +....+|...++|++++|+++ +++++..||.|.+|.--. .....+
T Consensus 168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccce
Confidence 45556655544 4456899998765421 122235666789999999998 899999999999996532 222356
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
.+.-|.+.|+++.|+++|.+|++|+..|.+.+|.+.+++....-...++|..+.++||+.+.+....|+.|.+....+..
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 78889999999999999999999999999999999999844444678999999999999999999999999998875431
Q ss_pred CceEEEeec---------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 156 QPLTVLRAC---------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 156 ~~~~~l~~~---------~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
.. ..+... ...+-.+.++++|.-+.++.+ +.-+.|.+||+-...
T Consensus 326 ~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln------------~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 326 IK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN------------GHPGHVQFYDLYTDS 378 (792)
T ss_pred hh-hhccCccCCCccccccccccceeEEEcCCCCceeec------------CCCceEEEEeccccc
Confidence 11 111110 123456677888743333333 235566666665433
No 233
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.04 E-value=8.2e-09 Score=113.56 Aligned_cols=192 Identities=10% Similarity=0.148 Sum_probs=134.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce--------eEEEe---------------------------C-CCCCcEEEEE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAK--------AAELK---------------------------D-PNEQVLRVLD 44 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~--------i~~l~---------------------------~-~~~~~V~~Va 44 (648)
||+.||+++|+|+.|..|.+|+.+-... ++.+. . .....|.+++
T Consensus 60 Ays~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 60 AYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCS 139 (1081)
T ss_pred EEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEee
Confidence 6899999999999999999998642111 11000 0 0122355667
Q ss_pred EccCCCeEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEccCC-----CEEEEEeCCCeEEEEeCCCCceeeE
Q 006360 45 YSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSSDD-----KIIASVGLDKKLYTYDPGSRRPSSC 118 (648)
Q Consensus 45 fspdg~~lLaSgs~Dg~V~IWDl~t~~~~-v~~l~~H~~~V~slafsPdg-----~~LaSgs~Dg~I~IWDl~tgk~v~~ 118 (648)
|..||+ +|+.|-.||+|.|-+..+.... +...-+...+|++++|+|.. ..+++.....++.+|.+....+-+.
T Consensus 140 WtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~ 218 (1081)
T KOG1538|consen 140 WTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD 218 (1081)
T ss_pred ecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc
Confidence 888887 7888999999999876554421 22223567899999999943 4677777788888887764333223
Q ss_pred eeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006360 119 ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (648)
Q Consensus 119 ~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s 198 (648)
-...-...|+.+.++|.+++.|+.|+.+++|-..+- .+-++. .....|+.+...|++++++.+ .
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--rLGTvg--~~D~WIWtV~~~PNsQ~v~~G------------C 282 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--RLGTVG--EQDSWIWTVQAKPNSQYVVVG------------C 282 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEeecCe--EEeecc--ccceeEEEEEEccCCceEEEE------------E
Confidence 334556789999999999999999999999976542 112222 356789999999976665554 5
Q ss_pred CCCeEEcCCCC
Q 006360 199 VGDSILMPDPL 209 (648)
Q Consensus 199 ~D~~IkvWDlr 209 (648)
.||+|--|++.
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 58888888774
No 234
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.02 E-value=1.5e-08 Score=118.12 Aligned_cols=199 Identities=13% Similarity=0.158 Sum_probs=136.0
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCc-------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e-
Q 006360 3 NCKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K- 73 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~-------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~-~- 73 (648)
++++.++++|+.||+|++||...-. ...++. ..+..+.++.+.+.++ .+|.++.||.|++.+++.... .
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccc
Confidence 3456899999999999999986421 112222 1456778888888887 788889999999999965211 1
Q ss_pred ----eEEeccCC--CCeEEEEEcc-CCC-EEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEeCCCCEEEEEEc
Q 006360 74 ----VSWLKQHS--APTAGISFSS-DDK-IIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 74 ----v~~l~~H~--~~V~slafsP-dg~-~LaSgs~Dg~I~IWDl~tgk~v~~~~---h~~~I~slafsPdG~~Lasgs~ 142 (648)
......+. ..|.+-+|.. .+. .++.+..-+.|.+||++.......+. ..+.|++++.+|.++++++|+.
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC
Confidence 11222222 2344445544 333 78889999999999999876554443 5678999999999999999999
Q ss_pred CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee-CCCeEEcCCCCCCCC
Q 006360 143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLPSVT 213 (648)
Q Consensus 143 DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s-~D~~IkvWDlr~~~~ 213 (648)
.|.+.+||+|-. .++...+. .+..+|..++.+|-.+ .....+.++. ..+.|-+|+......
T Consensus 1216 ~G~l~lWDLRF~-~~i~sw~~-P~~~~i~~v~~~~~~~--------~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFR-VPILSWEH-PARAPIRHVWLCPTYP--------QESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred CceEEEEEeecC-ceeecccC-cccCCcceEEeeccCC--------CCceEEEecccCCCceeeeecccCcc
Confidence 999999999976 34444443 4557888888777322 0112222223 466788888765533
No 235
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.00 E-value=5.7e-09 Score=117.60 Aligned_cols=188 Identities=13% Similarity=0.162 Sum_probs=133.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeE------EEe-----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---C-
Q 006360 7 EHLASISLSGDLILHNLASGAKAA------ELK-----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---S- 71 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~------~l~-----~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~---~- 71 (648)
.-+++++.||.|..|+++.-.... ... ......+++++|.+...+.|+.|.++|.|+-=+-.+. .
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 458889999999999886432211 000 1123456789999988888999999999987333222 1
Q ss_pred ---ceeEEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCC-CCceeeEe-eCCCCeEEEEEeCC-CCEEEEEEcCC
Q 006360 72 ---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNG 144 (648)
Q Consensus 72 ---~~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~-tgk~v~~~-~h~~~I~slafsPd-G~~Lasgs~DG 144 (648)
..+.....|.+.|+++.++| ..+.|.+++ |.+|+||... ...++..+ .+...|++++|+|- -..++++..||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 11335567889999999999 445555555 9999999987 55555444 45666999999995 56788888999
Q ss_pred eEEEEECCCC-CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 145 RVVFYDIRGK-PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 145 ~V~IWDl~s~-~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.|.|||+... ..|+.... .+....+.+.|+++|++|+++ ...|.+.+|++.
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavG------------d~~G~~~~~~l~ 516 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVG------------DANGTTHILKLS 516 (555)
T ss_pred ceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEe------------cCCCcEEEEEcC
Confidence 9999999864 23344333 345667778888877776665 557889999885
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=4.5e-09 Score=106.62 Aligned_cols=182 Identities=17% Similarity=0.130 Sum_probs=129.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee--EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEec
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK 78 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i--~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~-~~v~~l~ 78 (648)
|++.+..++++..+|.+.+-+...+... ++++. |.-.+....|+....+++++|++|+.+..||++... ...+..+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 5666778888888999986654443332 25555 555666678988877899999999999999998433 3234466
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCC-CCceeeEeeCCCCeEEEEEeCC--CCEEEEEEcCCeEEEEECCCC
Q 006360 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-SRRPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 79 ~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~-tgk~v~~~~h~~~I~slafsPd--G~~Lasgs~DG~V~IWDl~s~ 154 (648)
-|...|.+|.-+| .+.+|++|+.|-.|++||.| .++++..-...+.|+.++++|. +..|+++-.+| .+|.+....
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 7888999999988 88999999999999999999 5788877777899999999994 34455555555 677777654
Q ss_pred CCceE-EEe-ecCCCCCeeEEEEccCCCeEEEe
Q 006360 155 PQPLT-VLR-ACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 155 ~~~~~-~l~-~~~h~~~VtsLafspdg~~Las~ 185 (648)
...+. ++. ...|.+-+..-.|.....++++|
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeee
Confidence 32211 111 12566666666664433444444
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.99 E-value=1.1e-07 Score=103.57 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=120.0
Q ss_pred CEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 7 EHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 7 ~~L-asgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
+++ ++-..+|.|.|.|..+.+.+.++.... .....++|++|++ ++++++.||.|.+||+.+.+. +..+.... ...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~-v~~i~~G~-~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKV-VATIKVGG-NPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSE-EEEEE-SS-EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCC-EEEEEcCCCeEEEEECCcccE-EEEEecCC-Ccc
Confidence 444 455668999999999999999998532 3334478999999 566678899999999999884 55555444 468
Q ss_pred EEEEccCCCEEEEEe-CCCeEEEEeCCCCceeeEeeC--------CCCeEEEEEeCCCCEEEEEEc-CCeEEEEECCCCC
Q 006360 86 GISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKP 155 (648)
Q Consensus 86 slafsPdg~~LaSgs-~Dg~I~IWDl~tgk~v~~~~h--------~~~I~slafsPdG~~Lasgs~-DG~V~IWDl~s~~ 155 (648)
++++++||++++++. .++.+.++|.++.+.++.+.. ...+..+..++....+++.-. .+.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 899999999988765 688999999999998887742 346778888888875555554 5889998988763
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
.+.. .............|+|+++|++.+....+
T Consensus 162 ~~~~--~~i~~g~~~~D~~~dpdgry~~va~~~sn 194 (369)
T PF02239_consen 162 NLKV--TTIKVGRFPHDGGFDPDGRYFLVAANGSN 194 (369)
T ss_dssp CEEE--EEEE--TTEEEEEE-TTSSEEEEEEGGGT
T ss_pred ccce--eeecccccccccccCcccceeeecccccc
Confidence 3222 22234567888999999998766544333
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=3.1e-09 Score=122.34 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=120.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~ 82 (648)
+++.-++++|+.-+.|++|+....+....+.+ |.+.|..+.|+-+|+ +++++++|.++++|++++.+...-...+|.+
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccc
Confidence 45556889999999999999873333234555 778888899999998 8999999999999999888754446779999
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h-~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
.|+.++|.|+ +|++++.|.++++|+....+......| ...|..++..++..++++++.|+.+++||+.+.
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999987 999999999999997655443322234 456899999999899999999999999999753
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=114.76 Aligned_cols=179 Identities=16% Similarity=0.200 Sum_probs=135.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCC-CCc-eeEEec
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG-RSP-KVSWLK 78 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd-g~~lLaSgs~Dg~V~IWDl~t-~~~-~v~~l~ 78 (648)
|+..|..|++|+.|..|.+||+..++....+...|...|...+|-|. +..-|++++.||.|++=.+.. +.+ ....+.
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~ 229 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA 229 (559)
T ss_pred ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence 78889999999999999999999999888888778777776778774 233689999999999888733 222 245678
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCceeeEe----eCCC---CeEEEEEeCCC-CEEEEEEcCCeEEEE
Q 006360 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEA---PFSSLAFIDDD-WILTAGTSNGRVVFY 149 (648)
Q Consensus 79 ~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v~~~----~h~~---~I~slafsPdG-~~Lasgs~DG~V~IW 149 (648)
.|.+.|+.++.-| .-+.|.+++.|+.+.-+|++.+.+...+ .+.. ....++.+|.. +.+++|+.|-.+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 8999999999999 6678999999999999999987654333 2333 46788888854 488999999999999
Q ss_pred ECCCCCCc-----eEEEeec----CCCCCeeEEEEccCCC
Q 006360 150 DIRGKPQP-----LTVLRAC----SSSEAVSSLCWQRAKP 180 (648)
Q Consensus 150 Dl~s~~~~-----~~~l~~~----~h~~~VtsLafspdg~ 180 (648)
|.+.-... +..++.. ...-.|++++|+.++.
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 99853211 1111110 2234589999986543
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1e-08 Score=111.64 Aligned_cols=169 Identities=17% Similarity=0.307 Sum_probs=127.5
Q ss_pred EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-----EEeccCCC-
Q 006360 9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-----SWLKQHSA- 82 (648)
Q Consensus 9 Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v-----~~l~~H~~- 82 (648)
|+.++....|+-+|++.|..+.-+.. ....+++|..++... +|++|+.+|.|-.||.+....+- ..+..|..
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEcccccccccccc-ccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 44555566799999999999888875 557889999999877 89999999999999997665221 11222333
Q ss_pred ----CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEeCC--CCEEEEEEcCCeEEEEECCCC
Q 006360 83 ----PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 83 ----~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h--~~~I~slafsPd--G~~Lasgs~DG~V~IWDl~s~ 154 (648)
.|+++.|+-+|-.+++|..+|.|.|||++..+++..-.| .-+|..+.|.+. ++.|++. ....++|||-.++
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 399999998899999999999999999999998877655 557889999774 3444443 4467999999988
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006360 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 155 ~~~~~~l~~~~h~~~VtsLafspdg~~Las 184 (648)
+ ++..+. ....+..+|+-|++-.+++
T Consensus 305 k-~~asiE---pt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 305 K-PMASIE---PTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred C-ceeecc---ccCCcCceeeecCCceEEE
Confidence 4 333333 4566999999886444433
No 241
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.97 E-value=1.1e-09 Score=123.12 Aligned_cols=111 Identities=19% Similarity=0.370 Sum_probs=102.2
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 006360 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 36 ~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~ 115 (648)
|...|.|+.|...|. +|++|++|..|+||...+..+ +..+.+|.+.|+.++.+.+.-+++++++|..|++|-+.++.+
T Consensus 189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~-lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARC-LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred hhhheeeeeeccccc-eEeecCccceeeeeeccchhh-hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 777899999999998 899999999999999988875 678899999999999999999999999999999999999999
Q ss_pred eeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 116 SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 116 v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
+.++ +|.+.|++++|+|-. +.+.||++++||.+
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 8776 799999999999964 66789999999998
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.8e-08 Score=102.31 Aligned_cols=206 Identities=13% Similarity=0.174 Sum_probs=131.7
Q ss_pred CccCCC-CEEEEEECCCcEEEEECCCC----c--------eeEEEeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEE
Q 006360 1 MYNCKD-EHLASISLSGDLILHNLASG----A--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWD 66 (648)
Q Consensus 1 AFSpdG-~~Lasgs~DG~V~IwDl~sg----~--------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs-~Dg~V~IWD 66 (648)
||-|.+ ..|++|+.. -|.||..... . +...++......|+.+.|++||. .+++++ .|..|.|||
T Consensus 147 awRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWd 224 (445)
T KOG2139|consen 147 AWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWD 224 (445)
T ss_pred EeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEc
Confidence 466655 456667665 4899976421 1 11123333346789999999998 666665 567899999
Q ss_pred CCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCe
Q 006360 67 TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR 145 (648)
Q Consensus 67 l~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~-tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~ 145 (648)
.+++... -......+.+.-+.|+||+.+|+.+.-|+..++|+.. +-....-.-..+.|...+|+|+|.+|+.... |.
T Consensus 225 pdtg~~~-pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs 302 (445)
T KOG2139|consen 225 PDTGQKI-PLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS 302 (445)
T ss_pred CCCCCcc-cccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC
Confidence 9888742 2222444568899999999999999999999999644 3333333334569999999999998876554 33
Q ss_pred EEEEECCCCCCc-----------eEEEee------cC----CCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006360 146 VVFYDIRGKPQP-----------LTVLRA------CS----SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 146 V~IWDl~s~~~~-----------~~~l~~------~~----h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~Ik 204 (648)
-+||.+.-..++ +..+.. .. ..+.+.+++|+|.|.|+++.....+...+ ....|.
T Consensus 303 p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~----~k~~i~ 378 (445)
T KOG2139|consen 303 PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL----CKLHIS 378 (445)
T ss_pred ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh----hhhhhh
Confidence 445544321110 000000 01 25778999999999999986332211110 134677
Q ss_pred cCCCCCCCCc
Q 006360 205 MPDPLPSVTT 214 (648)
Q Consensus 205 vWDlr~~~~~ 214 (648)
+||.+...+.
T Consensus 379 ~fdtr~sp~v 388 (445)
T KOG2139|consen 379 RFDTRKSPPV 388 (445)
T ss_pred hhcccccCce
Confidence 8888765543
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.5e-07 Score=104.39 Aligned_cols=161 Identities=12% Similarity=0.120 Sum_probs=109.3
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEccCCC
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D--g~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~ 94 (648)
.|.++|.. +.....+.. +...+....|+|||+.++++...+ ..|++||+.++.. ..+....+.+...+|+|||+
T Consensus 180 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence 47788875 444444443 455677889999998555554333 3699999988763 33444445566789999999
Q ss_pred EEEE-EeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006360 95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 95 ~LaS-gs~Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~-DG--~V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
.|+. ...++ .|++||+.+++......+........|+|||+.|+..+. +| .|++||+.++. ...+.. ...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~~~lt~--~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--AERVTF--VGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeec--CCC
Confidence 8874 44444 689999998876655555556677899999998877664 33 58888887663 222321 123
Q ss_pred CeeEEEEccCCCeEEEe
Q 006360 169 AVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (648)
......|+|+|++++..
T Consensus 332 ~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 332 YNARPRLSADGKTLVMV 348 (430)
T ss_pred CccceEECCCCCEEEEE
Confidence 34567899999888776
No 244
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=5.3e-09 Score=113.74 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=120.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC------Cc----eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS------GA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s------g~----~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~ 71 (648)
+..+++++++|+.||+|+.|++.. .. ....+.+ |.+.|+.++++.... .|++|+.||+|++|+.....
T Consensus 352 v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 352 VPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec-cccceeeeeeccccc-ceeeecCCceEEeeccCCcC
Confidence 567899999999999999996532 11 2234444 788888999998876 69999999999999885544
Q ss_pred ce-------------------------------------------eEEecc-------CCCCeEEEEEccCCCEEEEEeC
Q 006360 72 PK-------------------------------------------VSWLKQ-------HSAPTAGISFSSDDKIIASVGL 101 (648)
Q Consensus 72 ~~-------------------------------------------v~~l~~-------H~~~V~slafsPdg~~LaSgs~ 101 (648)
++ +..+.. ....++.+.++|...+.+++..
T Consensus 430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 31 000000 1134677889998899999999
Q ss_pred CCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 102 DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 102 Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
|+.|+++|..+++++... .|...++++++.|+|-+|++++.||.|++|.+...
T Consensus 510 d~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 510 DRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 999999999999987655 69999999999999999999999999999999765
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.7e-07 Score=104.80 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=107.3
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEccCCC
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg--~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~ 94 (648)
.|.++|.. +...+.+.. ....+....|+|||+.++++...++ .|++||+.+++. ..+..........+|+||++
T Consensus 199 ~l~i~d~d-G~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCC-CCCceEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 57777864 433344433 4456777899999996555554443 588999987763 23333333445789999999
Q ss_pred EEEE-EeCCC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 006360 95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (648)
Q Consensus 95 ~LaS-gs~Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~-DG--~V~IWDl~s~~~~~~~l~~~~h~~ 168 (648)
.|+. ...++ .|++||+.+++......+.......+|+|||++|+..+. ++ .|+++|+.++. ...+.. +..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~--~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTF--EGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEec--CCC
Confidence 8865 45555 488889988876655555556678899999998877654 33 47777887653 233331 223
Q ss_pred CeeEEEEccCCCeEEEe
Q 006360 169 AVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (648)
.....+|+|||++++..
T Consensus 351 ~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 351 QNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCcCeeECCCCCEEEEE
Confidence 34567999999888765
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.90 E-value=1.2e-06 Score=94.65 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=120.4
Q ss_pred CccCCCCEEEEEE-CCCcEEEEECCC-CceeEE---Ee---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006360 1 MYNCKDEHLASIS-LSGDLILHNLAS-GAKAAE---LK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (648)
Q Consensus 1 AFSpdG~~Lasgs-~DG~V~IwDl~s-g~~i~~---l~---------~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWD 66 (648)
++++++++|+++. .+|.|.+|++.. |..... +. .......+++.|+|++++++++.-....|++|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 3678999998886 488999999976 333222 21 012456788999999996665555566899999
Q ss_pred CCCCCcee---EE-eccCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCC--CCce--eeEee-------CCCCeEEEEE
Q 006360 67 TTGRSPKV---SW-LKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPG--SRRP--SSCIT-------YEAPFSSLAF 130 (648)
Q Consensus 67 l~t~~~~v---~~-l~~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~--tgk~--v~~~~-------h~~~I~slaf 130 (648)
++.....+ .. ..........++|+|+++++++..+ ++.|.+|++. .+.. +..+. .......+++
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence 97654212 11 2234456889999999998866654 6689999887 4432 22221 1225788999
Q ss_pred eCCCCEEEEEEc-CCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEec
Q 006360 131 IDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 131 sPdG~~Lasgs~-DG~V~IWDl~s~~~~~~~l~~~-~h~~~VtsLafspdg~~Las~~ 186 (648)
+|||++|++... ++.|.+|+++.....+..+... ........++++|+|++|+++.
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence 999999988774 6779999995432223333322 2244588999999988876653
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-08 Score=103.88 Aligned_cols=197 Identities=14% Similarity=0.212 Sum_probs=135.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCC-----------CCcEEEEEEccCCC-eEEEEEeCCCeEEE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNSR-HLLVTAGDDGTLHL 64 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~-----~i~~l~~~~-----------~~~V~~Vafspdg~-~lLaSgs~Dg~V~I 64 (648)
|+..|++|++|+.+|.|.+|.-.... ....++.|. .+.|..+.|.++++ ..++....|++|++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 67889999999999999999743222 223343321 34577788987653 35666789999999
Q ss_pred EECCCCCce-----------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q 006360 65 WDTTGRSPK-----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 65 WDl~t~~~~-----------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWD 109 (648)
|.+...... ...-..|.-.|++|.++.|...++++. |-.|.+|+
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeecc
Confidence 988432211 012235777789999999888887664 67899999
Q ss_pred CCC-CceeeEee--------CCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCCCCce---EEEeec----------CC
Q 006360 110 PGS-RRPSSCIT--------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPL---TVLRAC----------SS 166 (648)
Q Consensus 110 l~t-gk~v~~~~--------h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~~~~~---~~l~~~----------~h 166 (648)
+.- .+...++. ...-|++..|+|. .++++..+..|+|++.|++....+- +.+... +-
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 864 33333332 2345889999994 6788889999999999999532111 111110 11
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCC-CeEEcCCCCCCCC
Q 006360 167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG-DSILMPDPLPSVT 213 (648)
Q Consensus 167 ~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D-~~IkvWDlr~~~~ 213 (648)
-..|..+.|+++|+|+++- | -+|++||+.+...
T Consensus 272 IsSISDvKFs~sGryilsR--------------Dyltvk~wD~nme~~ 305 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSR--------------DYLTVKLWDLNMEAK 305 (433)
T ss_pred hhhhhceEEccCCcEEEEe--------------ccceeEEEeccccCC
Confidence 2457889999999998876 4 6899999976554
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.87 E-value=4.4e-07 Score=98.76 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=132.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~- 79 (648)
+|++||+++++++.||.|.++|+.+++.+.+++. +.....+++++||+++++++..++.|.|+|.++.+. +..+..
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTG 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccc
Confidence 3789999999999999999999999999999984 455678999999997777777899999999988875 343332
Q ss_pred ------CCCCeEEEEEccCCCEEEEE-eCCCeEEEEeCCCCcee--eEeeCCCCeEEEEEeCCCCEEEEE-EcCCeEEEE
Q 006360 80 ------HSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFY 149 (648)
Q Consensus 80 ------H~~~V~slafsPdg~~LaSg-s~Dg~I~IWDl~tgk~v--~~~~h~~~I~slafsPdG~~Lasg-s~DG~V~IW 149 (648)
....+..|..+|....++.. -+.+.|.+.|....+.+ ..+..........|+|++++++++ ..++.|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 23467888888877755554 44589999998876543 344566778899999999987765 456789999
Q ss_pred ECCCCCCceEEEee--cCCCCCeeEEEEccC-CCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccccc
Q 006360 150 DIRGKPQPLTVLRA--CSSSEAVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 150 Dl~s~~~~~~~l~~--~~h~~~VtsLafspd-g~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
|..+.+. +..+.. ..|..++..+- +|. |.+-++.+. +...++.-....+.+||...+.....+..
T Consensus 200 D~~~~k~-v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~---~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 200 DTKTGKL-VALIDTGKKPHPGPGANFP-HPGFGPVWATSGL---GYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp ETTTTEE-EEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBS---SSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred eeccceE-EEEeecccccccccccccc-CCCcceEEeeccc---cceecccccCCccccchhhcCeEEEEEEC
Confidence 9988632 333321 13444555543 332 222333311 22222333345666788877776655443
No 249
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.85 E-value=5.3e-08 Score=113.75 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=124.8
Q ss_pred EECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------eEEeccCCCCeEEEEEccCCC
Q 006360 21 HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------VSWLKQHSAPTAGISFSSDDK 94 (648)
Q Consensus 21 wDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~------v~~l~~H~~~V~slafsPdg~ 94 (648)
|++ .|..+..+.. |...+..++.++....+|++|+.||+|++||.+.-... ......-...+.++...+.+.
T Consensus 1034 W~p-~G~lVAhL~E-hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHE-HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhh-ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665 5778887776 45555577877766449999999999999998432110 112222456789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCce-------eeEee--CCCCe-EEEEEeC-CCC-EEEEEEcCCeEEEEECCCCCCceEEEe
Q 006360 95 IIASVGLDKKLYTYDPGSRRP-------SSCIT--YEAPF-SSLAFID-DDW-ILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (648)
Q Consensus 95 ~LaSgs~Dg~I~IWDl~tgk~-------v~~~~--h~~~I-~slafsP-dG~-~Lasgs~DG~V~IWDl~s~~~~~~~l~ 162 (648)
.+|+++.||.|.+.++...+. ..... ..+.+ .+-+|.. ++. .|+.+...+.|..||+++... ...++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLK 1190 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhh
Confidence 999999999999999876211 11111 23333 3334443 234 788888899999999998633 23344
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 163 ~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
.....+.|++++.+|.+++++.| ...|.+.+||+|-..+..+
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviG------------ts~G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIG------------TSRGQLVLWDLRFRVPILS 1232 (1431)
T ss_pred cCccccceeEEEecCCceEEEEe------------cCCceEEEEEeecCceeec
Confidence 44556899999999966665554 5688899999996665444
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.80 E-value=2.8e-06 Score=91.61 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=125.6
Q ss_pred CccCCCCEEEEEEC----CCcEEEEECCCC--c--eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 006360 1 MYNCKDEHLASISL----SGDLILHNLASG--A--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (648)
Q Consensus 1 AFSpdG~~Lasgs~----DG~V~IwDl~sg--~--~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~ 72 (648)
++++++++|.+... +|.|..|++... + .+..... .......++++++++.++++...+|.|.+|++.....
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 46889999988866 568999987653 3 2333332 2333345899999996566556799999999976421
Q ss_pred eeEE--ec-----------cCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCc--eee----EeeCCCCeEEEEEeC
Q 006360 73 KVSW--LK-----------QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRR--PSS----CITYEAPFSSLAFID 132 (648)
Q Consensus 73 ~v~~--l~-----------~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~tgk--~v~----~~~h~~~I~slafsP 132 (648)
.... .. ......+++.|+|++++++++.. ...|++|++.... ... .+........++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 1111 11 12345789999999998887644 3379999987654 322 224566788999999
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCCCceEEE---eec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006360 133 DDWILTAGTS-NGRVVFYDIRGKPQPLTVL---RAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 133 dG~~Lasgs~-DG~V~IWDl~s~~~~~~~l---~~~----~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~Ik 204 (648)
+++++++.++ ++.|.+|++......+..+ ... ........|+++|||++|.+. ...++.|.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-----------nr~~~sI~ 270 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-----------NRGSNSIS 270 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-----------ECTTTEEE
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-----------eccCCEEE
Confidence 9999887765 6789999998322222222 211 112257889999998887655 23356666
Q ss_pred cCCCC
Q 006360 205 MPDPL 209 (648)
Q Consensus 205 vWDlr 209 (648)
+|++.
T Consensus 271 vf~~d 275 (345)
T PF10282_consen 271 VFDLD 275 (345)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66664
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=121.21 Aligned_cols=182 Identities=14% Similarity=0.230 Sum_probs=142.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~ 82 (648)
+|...+.++|+.||.|++|.+..++.+..+.......|+.+.|+.+|+ .+..+..||.+.+|.+... .....+.|..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~pk--~~~s~qchnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASPK--PYTSWQCHNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCCc--ceeccccCCc
Confidence 456678899999999999999888888877754457788889999998 6888899999999999833 2567788998
Q ss_pred CeEEEEEccCCCEEEEEe---CCCeEEEEeCCCCc---eeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC
Q 006360 83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRR---PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs---~Dg~I~IWDl~tgk---~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
...++.|-. ..+++++ .++.+.+||.--.. ++. ..|.+.++++++-|.-+.|++|+.+|.|++||++.. +
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-q 2369 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-Q 2369 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH-H
Confidence 899999974 6666654 46689999975432 223 469999999999999999999999999999999976 2
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcc
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~s 215 (648)
....+. . ++ ...++++++..|.|+||++..+.-..
T Consensus 2370 l~h~~~-------~----~~-------------~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2370 LRHTFQ-------A----LD-------------TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred HHHHhh-------h----hh-------------hhheeeccCcccceEEEEccccchhh
Confidence 222222 1 11 34577888889999999997664433
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=95.22 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=105.8
Q ss_pred ccCCCCEEE-EEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 006360 2 YNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSpdG~~La-sgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H 80 (648)
|.-|..+++ ....|+.|.+|++...+-.+++.. ....+..++|+|+|+++|.+...|-.|.+|.+.+... ..+.--
T Consensus 56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~~~p 132 (447)
T KOG4497|consen 56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLLPHP 132 (447)
T ss_pred eeccceeeeeeeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEecccee--EEeccc
Confidence 445555554 457788999999988888888886 3455677899999999999999999999999988763 233334
Q ss_pred CCCeEEEEEccCCCEEEEEeCCC------------------------------------eEEEEeCCCCceeeEeeCCCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDK------------------------------------KLYTYDPGSRRPSSCITYEAP 124 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg------------------------------------~I~IWDl~tgk~v~~~~h~~~ 124 (648)
+..+..++|+|||++.+.++.-. .+.+||.--.-.+......-.
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG 212 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence 45678899999999988765422 233443221111112223356
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 125 FSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 125 I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
+..+.|+|.+++|++|+.|+.++|.+--+
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceee
Confidence 77888888888888888888888865444
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=7e-06 Score=86.08 Aligned_cols=189 Identities=11% Similarity=0.148 Sum_probs=129.4
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCC--CceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 006360 1 MYNCKDEHLASISL---SGDLILHNLAS--GAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (648)
Q Consensus 1 AFSpdG~~Lasgs~---DG~V~IwDl~s--g~~i~--~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~ 73 (648)
+|+++.++|.++.. +|.|..|.+.. |++.. .... .+..-+-|+++++++.++++-...|.|.++-++.....
T Consensus 46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 58899998887754 46777777653 44322 1111 22332458999999955555556789999999553211
Q ss_pred --eEEeccCCCC----------eEEEEEccCCCEEEEEeCC-CeEEEEeCCCCceeeE----eeCCCCeEEEEEeCCCCE
Q 006360 74 --VSWLKQHSAP----------TAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWI 136 (648)
Q Consensus 74 --v~~l~~H~~~----------V~slafsPdg~~LaSgs~D-g~I~IWDl~tgk~v~~----~~h~~~I~slafsPdG~~ 136 (648)
......|.+. +....|.|++++|+++.-. -+|.+||+..|+.... +.....-.-|.|+|++++
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~ 204 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY 204 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence 2233445554 8899999999999887542 2699999998875432 245667789999999999
Q ss_pred EEEEEc-CCeEEEEECCCCCCceEEEeec-------CCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 137 LTAGTS-NGRVVFYDIRGKPQPLTVLRAC-------SSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 137 Lasgs~-DG~V~IWDl~s~~~~~~~l~~~-------~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
.++.++ +++|.+|........+..+... .......+|..++||+||..+....+
T Consensus 205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 988776 8999999998753333333321 33456778999999999988744333
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=2.6e-06 Score=104.24 Aligned_cols=194 Identities=13% Similarity=0.065 Sum_probs=124.1
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeEE
Q 006360 1 MYNCKDEHLASISL-SGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (648)
Q Consensus 1 AFSpdG~~Lasgs~-DG~V~IwDl~sg~~i~~l~~~~----------------~~~V~~Vafspdg~~lLaSgs~Dg~V~ 63 (648)
||+++++.|+++.. .+.|+++|+.++. +..+.+.. -..-..|+|++++..++++...++.|+
T Consensus 630 avd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 630 AYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 35667776666554 4568889986543 43332200 012246899996655788888889999
Q ss_pred EEECCCCCceeEEecc---------------CCCCeEEEEEccCCCEE-EEEeCCCeEEEEeCCCCceeeEee-------
Q 006360 64 LWDTTGRSPKVSWLKQ---------------HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT------- 120 (648)
Q Consensus 64 IWDl~t~~~~v~~l~~---------------H~~~V~slafsPdg~~L-aSgs~Dg~I~IWDl~tgk~v~~~~------- 120 (648)
+||..++.. ..+.+ .-...+.|+|+|++.+| ++-..++.|++||+.++......+
T Consensus 709 v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 709 EYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 999977652 22111 11245679999998844 555667899999998765322110
Q ss_pred -------C--------CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC------------CCCCeeEE
Q 006360 121 -------Y--------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS------------SSEAVSSL 173 (648)
Q Consensus 121 -------h--------~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~------------h~~~VtsL 173 (648)
. ......++++++|+++++-..++.|++||..+.. . ..+...+ .-.....|
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEE
Confidence 0 1124588999999988888889999999998752 1 2222111 11245567
Q ss_pred EEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCC
Q 006360 174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (648)
Q Consensus 174 afspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~ 211 (648)
+++++| .++++...++.|++||+...
T Consensus 865 avd~dG------------~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 865 ALGENG------------RLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeCCC------------CEEEEECCCCEEEEEECCCC
Confidence 776654 35555666889999998654
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.70 E-value=2.3e-06 Score=91.77 Aligned_cols=170 Identities=13% Similarity=0.148 Sum_probs=133.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEeccCCCC
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQHSAP 83 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg-~V~IWDl~t~~~~v~~l~~H~~~ 83 (648)
+|++++..+. |.+.|.+...+-.+. -.+...|+-..+.-+.+ -++.|..|| .+-|||..+++ +..+...-+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGN 403 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEEeeCCccc
Confidence 6888888875 778888865554432 23555677777777777 688888898 89999999987 5667777788
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCC----eEEEEECCCCCCce
Q 006360 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----RVVFYDIRGKPQPL 158 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG----~V~IWDl~s~~~~~ 158 (648)
|.++..+++|++++.+.....|.++|+.+++....- ...+-|+...|+|++.+||.+--+| .|++||+.+.+
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--- 480 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--- 480 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe---
Confidence 999999999999999999999999999999865444 3567799999999999999877665 49999999872
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
++........-.+-+|.|++++|..-
T Consensus 481 -iy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 481 -IYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred -EEEecCCcccccCcccCCCCcEEEEE
Confidence 33322344556678999999998764
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=7.6e-07 Score=97.29 Aligned_cols=178 Identities=16% Similarity=0.220 Sum_probs=119.2
Q ss_pred CCCcEEEEECCCCcee-----EEEeCCCCCcEEEEEEccCCCeEEEEEeC--C---------CeEEEEECCCCCceeEEe
Q 006360 14 LSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYSRNSRHLLVTAGD--D---------GTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 14 ~DG~V~IwDl~sg~~i-----~~l~~~~~~~V~~Vafspdg~~lLaSgs~--D---------g~V~IWDl~t~~~~v~~l 77 (648)
.-..|+||........ +.|. ..+.|. +.|++-|..+|+.++. | .+++++++++..+ ..-
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~--~V~ 266 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV--SVP 266 (566)
T ss_pred CCcEEEEeccccccccchhhhcccc--ccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE--EEe
Confidence 3346888876422211 1111 224444 7899888766665442 3 3688888885553 233
Q ss_pred ccCCCCeEEEEEccCCCEEEE--EeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc---CCeEEEEECC
Q 006360 78 KQHSAPTAGISFSSDDKIIAS--VGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIR 152 (648)
Q Consensus 78 ~~H~~~V~slafsPdg~~LaS--gs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~---DG~V~IWDl~ 152 (648)
....++|++++|+|++..+++ |-.--++.|||++. +++..+ ..++=+++-|+|.|++|+.++. .|.|-|||+.
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 345789999999999966554 55566899999874 455444 3677788999999999998776 4789999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 153 s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
+.+ .+..+. ...-+-+.|+|||.|++++..... +- .|+.++||+..
T Consensus 345 n~K-~i~~~~----a~~tt~~eW~PdGe~flTATTaPR--lr----vdNg~Kiwhyt 390 (566)
T KOG2315|consen 345 NRK-LIAKFK----AANTTVFEWSPDGEYFLTATTAPR--LR----VDNGIKIWHYT 390 (566)
T ss_pred chh-hccccc----cCCceEEEEcCCCcEEEEEecccc--EE----ecCCeEEEEec
Confidence 863 333322 234556799999999988733211 11 28999999873
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.69 E-value=5e-07 Score=91.99 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=120.8
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCC-----CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCC
Q 006360 8 HLASISLSGDLILHNLASGAKAAELKDPNE-----QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHS 81 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~-----~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~-~~~v~~l~~H~ 81 (648)
.++-+..+|.|.+|..........+.+-.. ...-++.|++-+. .++++..+|.+.+-+.... -..++.++.|.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccc
Confidence 445566678888887543333333332111 1134577888887 5778888899885554333 22345788999
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC-ceeeE--eeCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCCC
Q 006360 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSC--ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 82 ~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tg-k~v~~--~~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
-.++-..|+- +.+++++|+.|+.+..||+|.. +.+.. ..|...|.++.-+| ++.+|++|+.|-.|++||.|+..+
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 9999999987 6689999999999999999943 33322 24788899998876 688999999999999999998766
Q ss_pred ceEEEeecCCCCCeeEEEEccCC
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAK 179 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg 179 (648)
|+..-. ..+.|+.+.++|.-
T Consensus 246 Pl~~~~---v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 246 PLFKAK---VGGGVWRIKHHPEI 265 (339)
T ss_pred ccccCc---cccceEEEEecchh
Confidence 655433 45889999999953
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.68 E-value=1.9e-07 Score=98.47 Aligned_cols=151 Identities=15% Similarity=0.206 Sum_probs=107.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce----eEEEeCCCCCcEEEEEEccCCCeEEE--EEeCCCeEEEEECCCCCceeE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAK----AAELKDPNEQVLRVLDYSRNSRHLLV--TAGDDGTLHLWDTTGRSPKVS 75 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~----i~~l~~~~~~~V~~Vafspdg~~lLa--Sgs~Dg~V~IWDl~t~~~~v~ 75 (648)
+++++++||++..+...+++++..... +.... -....+.+.|-.+....++ ..++...+.+|....+. ..
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~--~~ 145 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR--CE 145 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeecccccC--cc
Confidence 578889999998888877777654332 22221 1122233444444432232 23455566677666544 35
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee--EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~--~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
.+.+|-..+++|+|+||+++|+++..|..|++-....-..+. .++|...|..++.-++ ..|++++.|++|++||+.+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 677999999999999999999999999999997766544443 4479999999998754 5689999999999999999
Q ss_pred CCCc
Q 006360 154 KPQP 157 (648)
Q Consensus 154 ~~~~ 157 (648)
++++
T Consensus 225 gk~L 228 (390)
T KOG3914|consen 225 GKLL 228 (390)
T ss_pred CCcc
Confidence 8654
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.68 E-value=4.2e-08 Score=117.83 Aligned_cols=176 Identities=16% Similarity=0.248 Sum_probs=127.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECC--CCCceeE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTT--GRSPKVS 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs---~Dg~V~IWDl~--t~~~~v~ 75 (648)
.|+.+|+.+..+..||.+-+|... .+.....++ |....+++.|-. . ++++++ +++.+.+||.. .....++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee
Confidence 488999999999999999999974 555556665 566677777765 2 566654 67899999973 3333344
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
..|...++++++.|....|++|+.+|.|++||++..+..+.+.. ++ ...++++|+..|.++||++...
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~- 2400 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEF- 2400 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcccc-
Confidence 78999999999999999999999999999999998887766543 44 5678999999999999999876
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~ 201 (648)
..+..+. +...-.++ |-..|..+-++ ....+++|+.|+
T Consensus 2401 ~ll~~~p---~e~ak~gf-Fr~~g~Q~~v~----~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2401 GLLHTFP---SEHAKQGF-FRNIGMQINVG----QCNRIFSCGADG 2438 (2439)
T ss_pred chhhcCc---hhhcccch-hhhcCceeeec----cCceEEEecCCC
Confidence 3333222 11122333 55555555444 444555665565
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=1.7e-06 Score=95.23 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=121.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEe-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~-~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V 84 (648)
-..++-|...|.|.+|++..|+....+. +.|.+.|.++.|+.+-. .|.+++.|+.|..|+...... +..+.+....+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 3467788889999999999999888887 67888999999888877 799999999999999988774 56677788889
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCC-----CCEEEEEE-cCCeEEEEECCC
Q 006360 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-----DWILTAGT-SNGRVVFYDIRG 153 (648)
Q Consensus 85 ~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPd-----G~~Lasgs-~DG~V~IWDl~s 153 (648)
..++++||+..+++++. .|++||+.+++.+..+ +|.++|.++.|--+ |.+++++. .+..+.+|-+..
T Consensus 148 ~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 148 SSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999999998875 7999999999999888 69999999999876 66766543 345577887665
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=1.8e-06 Score=87.05 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=120.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC--C
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA--P 83 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~--~ 83 (648)
..+||.|+..|...+|...+.+....+...+...|..+.=.-+...-+..++.|.++++.++..+.... .-|.. .
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---eeeccccc
Confidence 357889999999999999766554433332333222211111222246677899999999987664321 12222 3
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--eeeEe--eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceE
Q 006360 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk--~v~~~--~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~ 159 (648)
++++++++|++++++.+....|..|.+.... .+.+. .....-.+..|+.....+|++..||++.|||++....+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 8899999999999999999999999886532 33322 3445556788999999999999999999999998655544
Q ss_pred EEe--ecCCCCCeeEEEEccCCC
Q 006360 160 VLR--ACSSSEAVSSLCWQRAKP 180 (648)
Q Consensus 160 ~l~--~~~h~~~VtsLafspdg~ 180 (648)
... ...|.+.+..+.|++-|.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCc
Confidence 332 236899999999998543
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=1.8e-07 Score=104.40 Aligned_cols=202 Identities=13% Similarity=0.162 Sum_probs=141.4
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCce-eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 006360 2 YNCKD-EHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 2 FSpdG-~~Lasgs~DG~V~IwDl~sg~~-i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~ 79 (648)
|+++. ..+++++.|-.|+.||+++-.. +..+...+.. ...|+|+-...+++++ +..+.|.|||.+.+...+..+++
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecc
Confidence 55655 4789999999999999987553 3334333333 3458999777655554 67788999999888777899999
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC--ceeeEeeCCCCeEEEEEeCC--CCEEEEEEcCCeEEEE-----
Q 006360 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR--RPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFY----- 149 (648)
Q Consensus 80 H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tg--k~v~~~~h~~~I~slafsPd--G~~Lasgs~DG~V~IW----- 149 (648)
|...|+.++|+. -...+.+++.|++|++||.... +....+....+|..-.|-|- |.++.---.+..|.++
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence 999999999987 5667899999999999998653 33444556677777777773 3333322223344444
Q ss_pred ----ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 150 ----DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 150 ----Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
+..+..+++..+. +|...|...-|-..+.-..- .+.....||+-+.|..+++|-+.
T Consensus 280 d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d--~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGD--YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhccccCCcceeeec--CcchHHHHHhhhhcccccCC--CCccceeEEEeecCCceEeeecc
Confidence 4444445555555 89999998888654321111 13456678999999999999764
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.3e-06 Score=92.38 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=106.0
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCE
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI 95 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaS-gs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~ 95 (648)
+++++++....+. +.....++|++++|+++++.+.++ |-.=-.|.|||++..- +.. -..++=+++-|+|.|++
T Consensus 252 ~Lyll~t~g~s~~--V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~d--f~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVS--VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFD--FPEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEE--EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eEe--CCCCCccceEECCCCCE
Confidence 5888887633333 343367899999999999844333 3345679999998754 333 33456688999999999
Q ss_pred EEEEeCC---CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc------CCeEEEEECCCCCCceEEEeecCC
Q 006360 96 IASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLTVLRACSS 166 (648)
Q Consensus 96 LaSgs~D---g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~------DG~V~IWDl~s~~~~~~~l~~~~h 166 (648)
|+.++.+ |.|-+||+.+.+++..+... ..+-+.|+|||.+|++++. |+.++||+..+.. +... .-
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~----l~~~-~f 399 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL----LHEK-MF 399 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce----eehh-hh
Confidence 9998876 58999999998777666433 3456799999999998875 6779999998752 1111 01
Q ss_pred CCCeeEEEEcc
Q 006360 167 SEAVSSLCWQR 177 (648)
Q Consensus 167 ~~~VtsLafsp 177 (648)
......++|.|
T Consensus 400 ~sEL~qv~W~P 410 (566)
T KOG2315|consen 400 KSELLQVEWRP 410 (566)
T ss_pred hHhHhheeeee
Confidence 11466777776
No 264
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=2.5e-06 Score=97.60 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=140.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V 84 (648)
++..++.|+....+..+|+++.+..+...- ....|..++.+ ++ ++++|...|+|.+-|.++.+. ++.+..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEec--Cc-EEEeecccceEEeecCCcCce-eeeeeccccce
Confidence 556788888888999999988777665553 22336655553 55 899999999999999998885 78999999999
Q ss_pred EEEEEccCCCEEEEEeC---------CCeEEEEeCCCCceeeEeeCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCC
Q 006360 85 AGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 85 ~slafsPdg~~LaSgs~---------Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~ 154 (648)
.++.. .|+.|++||. |..|++||++.-+.+.-+.......-+.|+|. -..+++.+..|...+.|..+.
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc
Confidence 87766 5999999986 55789999998876665554444567888885 567888889999999995443
Q ss_pred CCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 155 PQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 155 ~~~-~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
..+ ..+.........+..++++++|..++.+ ..++.|.+|--++
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------------d~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFG------------DHEGHVNLWADRP 343 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEe------------cccCcEeeecCCC
Confidence 332 3334333455668999999977777665 4588999997443
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.50 E-value=1.2e-06 Score=92.60 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=113.0
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEeccCCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCcee
Q 006360 42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPS 116 (648)
Q Consensus 42 ~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~--~v~~l~~H~~~V~slafsPdg~~LaSgs~D---g~I~IWDl~tgk~v 116 (648)
.+.+++.++ +|+.+..++...++++..... .......-...-+.+.|..+...+..+..- ..+.+|....+.+.
T Consensus 67 ~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 345666676 888888888877777754432 111222222334455555555555544444 45556665558888
Q ss_pred eEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006360 117 SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (648)
Q Consensus 117 ~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs 196 (648)
.+++|...++.++|+||+++|+++..|..|+|-..... ..+..++ .+|..-|..++..+ +..|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~Iesfc-lGH~eFVS~isl~~-------------~~~LlS 210 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFC-LGHKEFVSTISLTD-------------NYLLLS 210 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhc-cccHhheeeeeecc-------------Cceeee
Confidence 88899999999999999999999999999999777654 2222233 27999999999765 345788
Q ss_pred eeCCCeEEcCCCCCCCCcccccc
Q 006360 197 GAVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 197 ~s~D~~IkvWDlr~~~~~ss~ss 219 (648)
++.|++|++||.+....+.+...
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cCCCCcEEEEecccCCcccccch
Confidence 88899999999998888765443
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.48 E-value=8.7e-06 Score=99.64 Aligned_cols=154 Identities=12% Similarity=0.196 Sum_probs=109.1
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCC--------------CCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006360 1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDP--------------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (648)
Q Consensus 1 AFSp-dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~--------------~~~~V~~Vafspdg~~lLaSgs~Dg~V~IW 65 (648)
+|++ ++..+++...++.|++||..++... .+.+. .......|+|+++++.++++-..++.|++|
T Consensus 689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 3667 4555666667789999998766442 22210 012235689999998677777788999999
Q ss_pred ECCCCCceeEE------------ecc--------CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC----
Q 006360 66 DTTGRSPKVSW------------LKQ--------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---- 121 (648)
Q Consensus 66 Dl~t~~~~v~~------------l~~--------H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h---- 121 (648)
|+.++...+.. +-. .-....+++|+++|.++++-..++.|++||..++......+.
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 99765421111 000 011246899999999989889999999999988776654431
Q ss_pred ----------CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 122 ----------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 122 ----------~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
......++++++|+++++-+.++.|++||+.+..
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 1246789999999988888889999999998864
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.48 E-value=6.8e-05 Score=80.77 Aligned_cols=199 Identities=10% Similarity=0.076 Sum_probs=125.0
Q ss_pred ccCCCCEEEEEEC----------CCcEEEEECCCCceeEEEeCCCC------CcEEEEEEccCCCeEEEEEeC-CCeEEE
Q 006360 2 YNCKDEHLASISL----------SGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTAGD-DGTLHL 64 (648)
Q Consensus 2 FSpdG~~Lasgs~----------DG~V~IwDl~sg~~i~~l~~~~~------~~V~~Vafspdg~~lLaSgs~-Dg~V~I 64 (648)
++|||+.|+++.. +..|.+||..+++.+.++..... ..-..+++++||+.+++.--. +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 6899998876654 77899999999999988874322 122357899999954444424 789999
Q ss_pred EECCCCCceeE--------------------Eecc---------------CCCCeEEE---------EEcc-CCCEEEEE
Q 006360 65 WDTTGRSPKVS--------------------WLKQ---------------HSAPTAGI---------SFSS-DDKIIASV 99 (648)
Q Consensus 65 WDl~t~~~~v~--------------------~l~~---------------H~~~V~sl---------afsP-dg~~LaSg 99 (648)
+|+.+++.... +..+ +...|... .|.+ ++++++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99976653210 1000 00011000 2234 77776666
Q ss_pred eCCCeEEEEeCCCC-----ceeeEee--------CCCCeEEEEEeCCCCEEEEEE-c---------CCeEEEEECCCCCC
Q 006360 100 GLDKKLYTYDPGSR-----RPSSCIT--------YEAPFSSLAFIDDDWILTAGT-S---------NGRVVFYDIRGKPQ 156 (648)
Q Consensus 100 s~Dg~I~IWDl~tg-----k~v~~~~--------h~~~I~slafsPdG~~Lasgs-~---------DG~V~IWDl~s~~~ 156 (648)
.. |.|.+.|+... +....+. ..+.+.-++++++++.+++.. . .+.|.++|..+.+
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k- 290 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK- 290 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-
Confidence 55 99999996443 2333221 123344599999999888743 1 2479999998873
Q ss_pred ceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~-~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
.+..+. -...+..|+|++|++ +|+.. ...++.|.++|+.......+
T Consensus 291 vi~~i~---vG~~~~~iavS~Dgkp~lyvt-----------n~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 291 RLRKIE---LGHEIDSINVSQDAKPLLYAL-----------STGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEEEEe---CCCceeeEEECCCCCeEEEEe-----------CCCCCcEEEEECcCCeEEee
Confidence 233333 356899999999887 44433 22366677777765544433
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.46 E-value=2.3e-05 Score=84.33 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=138.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEEeCC--------CCCcEEEEE----Ecc-CCCeEEEEEeCCCeEEEEECCC
Q 006360 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP--------NEQVLRVLD----YSR-NSRHLLVTAGDDGTLHLWDTTG 69 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~--------~~~~V~~Va----fsp-dg~~lLaSgs~Dg~V~IWDl~t 69 (648)
|.||+.|+.. ..|.|++||..+... ..+.-. ....+.-+. |++ +|+ +++..+. |.+.|.+...
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEec-CcEEEECCCC
Confidence 5688888754 558899999865443 223211 011111111 333 354 7777776 7788877765
Q ss_pred CCceeEEeccCCCCeEEEEEccCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEE
Q 006360 70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (648)
Q Consensus 70 ~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg-~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~I 148 (648)
+- ....+|...|.-..+.-+++-++.|..|| .|-|+|.++++.......-+.|.++..+++|++++++.....|.+
T Consensus 351 ~~---~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 351 GY---SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred Ce---eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 54 23347777788888888888999999999 999999999998888888899999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 149 WDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
+|+.++.. +.+. ....+-|+.+.|+|+++++|.+.. .+-.-..|+++|...
T Consensus 428 ididngnv--~~id-kS~~~lItdf~~~~nsr~iAYafP--------~gy~tq~Iklydm~~ 478 (668)
T COG4946 428 IDIDNGNV--RLID-KSEYGLITDFDWHPNSRWIAYAFP--------EGYYTQSIKLYDMDG 478 (668)
T ss_pred EEecCCCe--eEec-ccccceeEEEEEcCCceeEEEecC--------cceeeeeEEEEecCC
Confidence 99998842 2222 245678999999999999999833 222256788888764
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=7.5e-07 Score=99.56 Aligned_cols=197 Identities=17% Similarity=0.238 Sum_probs=139.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC-CceeEEEeCCCCCcEEEEEEccCC--CeEEEEEeCCCeEEEEECC--CCCceeEE
Q 006360 2 YNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNS--RHLLVTAGDDGTLHLWDTT--GRSPKVSW 76 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~s-g~~i~~l~~~~~~~V~~Vafspdg--~~lLaSgs~Dg~V~IWDl~--t~~~~v~~ 76 (648)
.+|-|+-+|.++.-| +++.|+.. +...+-+.....-.|..+.|++.. .+.+++ .......||++. ........
T Consensus 32 i~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~aIef~ 109 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNAIEFV 109 (1081)
T ss_pred eccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCccceEEE
Confidence 467777788787776 55666543 344444432233456678888754 323343 444566789983 22333456
Q ss_pred eccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 77 LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 77 l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk-~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
+.+|...|+++-|+| ....+++++-|-.+..||++... ++..+ .-......|+|+.....+.+.+..+.|.|||++.
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 779999999999999 55688999999999999999865 33333 3455667899997544455555667799999999
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 154 ~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
+..++..++ +|...|..++|..- -...+++++.|++|++||-.....
T Consensus 190 gs~pl~s~K--~~vs~vn~~~fnr~-----------~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 190 GSTPLCSLK--GHVSSVNSIDFNRF-----------KYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred CCcceEEec--ccceeeehHHHhhh-----------hhhhhcccCCCCceeeeccccccc
Confidence 988888888 68888999988752 344678888899999999876654
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=7.5e-05 Score=78.46 Aligned_cols=192 Identities=11% Similarity=0.140 Sum_probs=127.2
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-Ccee---EEEeCCCCCc----------EEEEEEccCCCeEEEEEe-CCCeEEE
Q 006360 1 MYNCKDEHLASISL-SGDLILHNLAS-GAKA---AELKDPNEQV----------LRVLDYSRNSRHLLVTAG-DDGTLHL 64 (648)
Q Consensus 1 AFSpdG~~Lasgs~-DG~V~IwDl~s-g~~i---~~l~~~~~~~----------V~~Vafspdg~~lLaSgs-~Dg~V~I 64 (648)
+++++|++|+++.. .|.|.++-++. |... ..+. |.+. ++...|.|+++ +|++++ .--.|.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~ 171 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFL 171 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEE
Confidence 35788999888754 47899999865 4322 2222 2222 78889999999 455544 3346999
Q ss_pred EECCCCCceeE--EeccCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCC--c--eeeEe-------eCCCCeEEEEE
Q 006360 65 WDTTGRSPKVS--WLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSR--R--PSSCI-------TYEAPFSSLAF 130 (648)
Q Consensus 65 WDl~t~~~~v~--~l~~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~tg--k--~v~~~-------~h~~~I~slaf 130 (648)
|++..+..... ....-......|.|+|++++.++..+ +++|-+|..... + .++.+ ....+...|.+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 99986542211 11133345789999999999877665 779999988763 2 22222 13556788999
Q ss_pred eCCCCEEEEEEc-CCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEE
Q 006360 131 IDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALL 195 (648)
Q Consensus 131 sPdG~~Lasgs~-DG~V~IWDl~s~~~~~~~l~~~-~h~~~VtsLafspdg~~Las~~~~~~~~~lv 195 (648)
++||++|+++.. ...|.+|.+......+..+... .+...-....|+++|++|++....++...++
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 999999998764 3468888887643333333332 4445578899999999888875555443333
No 271
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.44 E-value=1.9e-06 Score=86.53 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=97.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-eeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----CCCeEEEEECCCCCceeEEec
Q 006360 5 KDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~-~i~~l~~~~~~~V~~Vafspdg~~lLaSgs-----~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
-++.++++..||.+.+++.+.-. ....+...+.+.. +.++...+. ++.++. .-+..++|+++..+..+...+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeeccc-EEecCCcceEeeccceeeeccccccccccccc
Confidence 36778999999999999976411 1111111111111 122333343 333322 224567788765543222222
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCcee-eEe-eCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCC
Q 006360 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 79 ~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v-~~~-~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s 153 (648)
.. ..|.+++-+| +.+++++|+.||.+-+||.+..... ..+ .|+.+|+.+.|+| ++..|+++++||.+..||..+
T Consensus 178 ~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 178 AL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22 3499999999 7788889999999999999987432 222 5999999999999 688999999999999999885
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=2e-06 Score=89.30 Aligned_cols=187 Identities=9% Similarity=0.155 Sum_probs=127.1
Q ss_pred CEEEEEECCCcEEEEECCCCc-----------------------------------eeEEEeCCCCCcEEEEEEccCCCe
Q 006360 7 EHLASISLSGDLILHNLASGA-----------------------------------KAAELKDPNEQVLRVLDYSRNSRH 51 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~-----------------------------------~i~~l~~~~~~~V~~Vafspdg~~ 51 (648)
..++....|.+|++|.+.... +.+.+...|...|+++.++.|.+
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 456677789999999875321 11233345677788899999887
Q ss_pred EEEEEeCCCeEEEEECCCCCc--eeEEeccC-----CCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCcee----eEe
Q 006360 52 LLVTAGDDGTLHLWDTTGRSP--KVSWLKQH-----SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS----SCI 119 (648)
Q Consensus 52 lLaSgs~Dg~V~IWDl~t~~~--~v~~l~~H-----~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~v----~~~ 119 (648)
.+++ ++|-.|.+|++.-... .+.-++.+ ..-|++..|+| ..++++..+..|+|++.|++..... ..+
T Consensus 178 t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 4444 6789999999853321 12233333 34689999999 7788999999999999999854221 111
Q ss_pred e-------------CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC----------CCCe---eEE
Q 006360 120 T-------------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS----------SEAV---SSL 173 (648)
Q Consensus 120 ~-------------h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h----------~~~V---tsL 173 (648)
. --..|..+.|+++|+++++-.. -+|+|||+....+++..+..+.+ ...| ..+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1 1245788999999999998765 47999999887778777764421 1222 235
Q ss_pred EEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 174 afspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
+|+. +..++++|+..+.++++++
T Consensus 336 ~~sg------------~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 336 SWSG------------NDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred EEcC------------CcceEecccccceEEEecC
Confidence 5554 4455666677777888774
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.43 E-value=5.1e-06 Score=86.30 Aligned_cols=191 Identities=19% Similarity=0.209 Sum_probs=138.8
Q ss_pred CCCEEEEEECCCcEEEEE-CCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccC
Q 006360 5 KDEHLASISLSGDLILHN-LASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQH 80 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwD-l~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~---~~v~~l~~H 80 (648)
..+-+++.+.|.+++||- .+.++.-..+.......++++.+.++.+ .|+.|-..|++.-+.+...- ...+....|
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 345578899999999995 4456665556544567788999998887 78889999999988774321 224455678
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------------Cc------------eeeEe
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-----------------------------RR------------PSSCI 119 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t-----------------------------gk------------~v~~~ 119 (648)
...|..+.|+-...++++.+.|..+..--.+. ++ .+..+
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence 88898888888788888888776443221111 11 11111
Q ss_pred -eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEee
Q 006360 120 -TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (648)
Q Consensus 120 -~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s 198 (648)
+|.+.+.+++|.+....|++|..|..|.+||+...+. ..+..++|...|..+...+ .-..++++.
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~------------~t~~l~S~~ 259 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQ------------HTRQLISCG 259 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc--eeeeeccchhhhhhhhhhh------------hheeeeecc
Confidence 4788899999999999999999999999999987643 3444458889998888766 344566777
Q ss_pred CCCeEEcCCCCC
Q 006360 199 VGDSILMPDPLP 210 (648)
Q Consensus 199 ~D~~IkvWDlr~ 210 (648)
.|+.|.+||..-
T Consensus 260 edg~i~~w~mn~ 271 (404)
T KOG1409|consen 260 EDGGIVVWNMNV 271 (404)
T ss_pred CCCeEEEEeccc
Confidence 899999998863
No 274
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.42 E-value=9e-06 Score=89.96 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=135.0
Q ss_pred CccCCCCEEEEE---ECC-CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCcee
Q 006360 1 MYNCKDEHLASI---SLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKV 74 (648)
Q Consensus 1 AFSpdG~~Lasg---s~D-G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~--V~IWDl~t~~~~v 74 (648)
+|+|++..++.. ... ..++++|+++++....+.. ...-...+|+|||+.++++...|+. |+++|+.++. .
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~ 274 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--L 274 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--c
Confidence 588898876543 222 3699999988876555542 1222336899999988888888876 5566776665 2
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-Ce--EEE
Q 006360 75 SWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GR--VVF 148 (648)
Q Consensus 75 ~~l~~H~~~V~slafsPdg~~LaSgs~Dg---~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-G~--V~I 148 (648)
..+....+.-..-.|+|||++|+..+..+ .|.++|...+...........-..-.|+|||.+|+..+.. |. |.+
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~ 354 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDK 354 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence 33444444444678999999998876654 6888888877765444444444478899999999977743 44 777
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEc
Q 006360 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM 205 (648)
Q Consensus 149 WDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~Ikv 205 (648)
+|+.+... .+.+. +......-.|.++|+.+...+....+..+...+.++.+..
T Consensus 355 ~~~~~~~~-~~~lt---~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 355 NDLASGGK-IRILT---STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred eccCCCCc-EEEcc---ccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 77776643 34333 5555667789999999888766666777777776766654
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.0001 Score=81.83 Aligned_cols=160 Identities=9% Similarity=0.096 Sum_probs=104.4
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEE-EEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEccC
Q 006360 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (648)
Q Consensus 16 G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLa-Sgs~--Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPd 92 (648)
..|.+-|. +|...+.+.. .. .+...+|+||++.+++ +... +..|+++|+.+++. ..+....+.+....|+||
T Consensus 169 ~~l~~~d~-dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADY-TLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECC-CCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCC
Confidence 35667676 4544444443 23 5667899999985344 3332 35799999988763 334445566777899999
Q ss_pred CCEEEEEe-C--CCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCC
Q 006360 93 DKIIASVG-L--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSS 166 (648)
Q Consensus 93 g~~LaSgs-~--Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D-G--~V~IWDl~s~~~~~~~l~~~~h 166 (648)
|+.|+... . +..|+++|+.+++......+........|+|||+.|+..+.. + .|+++|+.++.. +.+...+.
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~ 321 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK 321 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC
Confidence 98776543 2 347999999888765554444434566899999988876642 3 588889887632 22221111
Q ss_pred CCCeeEEEEccCCCeEEEec
Q 006360 167 SEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 167 ~~~VtsLafspdg~~Las~~ 186 (648)
....|+|||++|+...
T Consensus 322 ----~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 322 ----NNSSVSTYKNYIVYSS 337 (419)
T ss_pred ----cCceECCCCCEEEEEE
Confidence 1248999999988764
No 276
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.4e-06 Score=93.87 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=129.7
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCCC
Q 006360 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGS 112 (648)
Q Consensus 35 ~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP--dg~~LaSgs~Dg~I~IWDl~t 112 (648)
.|.+.|..|.|+..|. +|+++++|..|.+||......++....+|...|..-.|-| +..-|++++.||.|++=.+..
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4778889999999998 8999999999999999888877888889999999889988 667899999999999877643
Q ss_pred -Ccee---eEeeCCCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEE
Q 006360 113 -RRPS---SCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFID 184 (648)
Q Consensus 113 -gk~v---~~~~h~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~---~VtsLafspdg~~Las 184 (648)
+.+. .+-.|.++|..++.-|+ -..|.+++.|+.|.-+|++.........+...+.. ....++.+|...
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt---- 294 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT---- 294 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc----
Confidence 3322 23369999999999996 45688999999999999997644333334334444 466777777433
Q ss_pred eccCCCCeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 185 ETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 185 ~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
..+..+..|.-+++||.+.....
T Consensus 295 -------~~faVgG~dqf~RvYD~R~~~~e 317 (559)
T KOG1334|consen 295 -------NEFAVGGSDQFARVYDQRRIDKE 317 (559)
T ss_pred -------cccccCChhhhhhhhcccchhhc
Confidence 23444456899999999866543
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=3e-06 Score=86.86 Aligned_cols=198 Identities=14% Similarity=0.201 Sum_probs=129.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEEeCCC-----------CCcEEEEEEccC-CCeEEEEEeCCCeEEE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRN-SRHLLVTAGDDGTLHL 64 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~-----~i~~l~~~~-----------~~~V~~Vafspd-g~~lLaSgs~Dg~V~I 64 (648)
|...|.||++|...|.|.+|.-.... ...++++|. .+.|..+.|..+ ++.-++..+.|++|++
T Consensus 34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl 113 (460)
T COG5170 34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL 113 (460)
T ss_pred eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence 55678999999999999999754322 222344432 234667777654 4455666789999999
Q ss_pred EECCCCCce------------------------------------------eEEeccCCCCeEEEEEccCCCEEEEEeCC
Q 006360 65 WDTTGRSPK------------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLD 102 (648)
Q Consensus 65 WDl~t~~~~------------------------------------------v~~l~~H~~~V~slafsPdg~~LaSgs~D 102 (648)
|.+.....+ ......|.-.|+++.|+.|...++++ .|
T Consensus 114 WKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-Dd 192 (460)
T COG5170 114 WKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DD 192 (460)
T ss_pred eeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cc
Confidence 988443100 00113466668889999877777655 46
Q ss_pred CeEEEEeCCCCc-eeeEe---eC-----CCCeEEEEEeCC-CCEEEEEEcCCeEEEEECCCCCCce---EE----Eeec-
Q 006360 103 KKLYTYDPGSRR-PSSCI---TY-----EAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPL---TV----LRAC- 164 (648)
Q Consensus 103 g~I~IWDl~tgk-~v~~~---~h-----~~~I~slafsPd-G~~Lasgs~DG~V~IWDl~s~~~~~---~~----l~~~- 164 (648)
-.|.+|++.-.. +..++ .| ..-|++..|+|. .+.+...+..|.|++-|++....+. +. +...
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 789999986432 22222 22 235788999995 5677788889999999999431110 11 1111
Q ss_pred -----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 165 -----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 165 -----~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
+-...|..+.|+++|+|+++- .-.+|++||+++...
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsR-------------dyltvkiwDvnm~k~ 313 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSR-------------DYLTVKIWDVNMAKN 313 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEe-------------ccceEEEEecccccC
Confidence 223567889999999888775 136899999997654
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.35 E-value=1.8e-05 Score=85.90 Aligned_cols=183 Identities=15% Similarity=0.140 Sum_probs=123.4
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC----------CCeEEEEECCCCCceeEEeccCC
Q 006360 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----------DGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 12 gs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~----------Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
.+..+.++||.+..+..+....--.-+.|. +.|++.|+++++-.-. ..+++|++++.....+ .....
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q-LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~ 274 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ-LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLK 274 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccE-EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecccc
Confidence 356678888888766655432221233444 8899999865553211 2468899998766433 33668
Q ss_pred CCeEEEEEccCCCEEEEE--eCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC---CeEEEEECCCCCC
Q 006360 82 APTAGISFSSDDKIIASV--GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQ 156 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSg--s~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D---G~V~IWDl~s~~~ 156 (648)
++|..++|.|.++.++++ -.+-.+.++|++.. +......+.=..+.|+|.+++++.++.| |.|.+||..+...
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 899999999977666554 47889999999876 3333345555678899999999987765 6799999988743
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.+..+. .....-+.|+||+.++.+...+.. --.|..|++||+-
T Consensus 353 ~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v~ 395 (561)
T COG5354 353 VAGAFN----GLNTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDVY 395 (561)
T ss_pred EEEEee----cCCceEeeccCCceEEEecCCCcc------cccCcceEEEEec
Confidence 332222 223444679999998877633221 1238999999985
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.33 E-value=3.4e-06 Score=87.59 Aligned_cols=102 Identities=18% Similarity=0.333 Sum_probs=82.2
Q ss_pred EEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006360 10 ASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (648)
Q Consensus 10 asgs~DG~V~IwDl~--sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~sl 87 (648)
..|...|.|.+..+. .-..+.++.+ |...+.+++|.+..+ ++++|..|..|.+||+-........+.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 345555555554433 3345566665 778889999999877 899999999999999987776677889999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCC
Q 006360 88 SFSSDDKIIASVGLDKKLYTYDPGSR 113 (648)
Q Consensus 88 afsPdg~~LaSgs~Dg~I~IWDl~tg 113 (648)
+..+--+.+++++.||.|.+||+...
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 99888899999999999999998653
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.32 E-value=0.00017 Score=73.65 Aligned_cols=177 Identities=14% Similarity=0.165 Sum_probs=110.6
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCceeE-Ee
Q 006360 1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WL 77 (648)
Q Consensus 1 AFSp-dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafs-pdg~~lLaSgs~Dg~V~IWDl~t~~~~v~-~l 77 (648)
+|.+ ++.++++--..+.|+.|+..+++.. .+... . ...+++. +++. |+.+..++ +.++|..+++.... ..
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~--~-~~G~~~~~~~g~--l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP--G-PNGMAFDRPDGR--LYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS--S-EEEEEEECTTSE--EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC--C-CceEEEEccCCE--EEEEEcCc-eEEEecCCCcEEEEeec
Confidence 3666 5556666556889999998766543 33321 2 4557777 5643 55555544 55669887753211 11
Q ss_pred c--c-CCCCeEEEEEccCCCEEEEEeCC--------CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEE-EEcCCe
Q 006360 78 K--Q-HSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTSNGR 145 (648)
Q Consensus 78 ~--~-H~~~V~slafsPdg~~LaSgs~D--------g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Las-gs~DG~ 145 (648)
. . .....+++++.++|+++++.... |.|+.++.. ++...........+.++|+||++.|++ -+..+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 1 1 34568899999999977776654 568888888 666555556667889999999997764 556788
Q ss_pred EEEEECCCCCCce---EEEeec-CCCCCeeEEEEccCCCeEEEe
Q 006360 146 VVFYDIRGKPQPL---TVLRAC-SSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 146 V~IWDl~s~~~~~---~~l~~~-~h~~~VtsLafspdg~~Las~ 185 (648)
|..|++......+ .++... ...+..-.++++.+|++.++.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 9999997543311 222211 222347788888876655443
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.30 E-value=5.5e-05 Score=77.38 Aligned_cols=153 Identities=11% Similarity=0.127 Sum_probs=104.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCC------CCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP------NEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTG 69 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~------~~~~V~~Vafspdg-----~~lLaSgs~Dg~V~IWDl~t 69 (648)
|||||+..||.+...|+|++||+. |..+..+... ....|..+.|.... ...|+.-..+|.++-|-+..
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLM-GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEecc-cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 699999999999999999999984 4544444421 23566667775432 22466667888888777632
Q ss_pred C--C--ceeEE--e-ccCCCCeEEEEEccCCCEEEEEeCCC-----------eEEEEeCCCCce----------------
Q 006360 70 R--S--PKVSW--L-KQHSAPTAGISFSSDDKIIASVGLDK-----------KLYTYDPGSRRP---------------- 115 (648)
Q Consensus 70 ~--~--~~v~~--l-~~H~~~V~slafsPdg~~LaSgs~Dg-----------~I~IWDl~tgk~---------------- 115 (648)
+ + ...+. + ..+...|.++.|+|.+++|++|+... -+..|.+-++.+
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~ 208 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS 208 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence 1 1 11222 2 22467899999999999888876532 255565422111
Q ss_pred -----ee-----Ee----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 116 -----SS-----CI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 116 -----v~-----~~----~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
.+ .+ .....|..|..+|||..||+.+.+|.|.+|++.+.
T Consensus 209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 00 01 13566889999999999999999999999999875
No 282
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.30 E-value=1.8e-06 Score=86.64 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=75.9
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc-CCCE
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKI 95 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP-dg~~ 95 (648)
..++|++...+.+..-. .....|.+++-+|.-++++++|++||.+-+||.+.....+..++.|+..|+.+.|+| ++..
T Consensus 160 ~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 45566654333221111 123448899999998889999999999999999888766778899999999999999 8899
Q ss_pred EEEEeCCCeEEEEeCCC
Q 006360 96 IASVGLDKKLYTYDPGS 112 (648)
Q Consensus 96 LaSgs~Dg~I~IWDl~t 112 (648)
|+++++||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999874
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=4.3e-06 Score=86.86 Aligned_cols=162 Identities=11% Similarity=0.169 Sum_probs=112.0
Q ss_pred EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCeE
Q 006360 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPTA 85 (648)
Q Consensus 10 asgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~----~~~v~~l~~H~~~V~ 85 (648)
++.+.+-.|-+-|+++|.. ..|. ....|.++.|...+. +++.|..+|.|..+|++.+ ....+. .-|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccc-cccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchh
Confidence 4455666788888876643 2333 345566678887676 8999999999999999654 222333 35778899
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEeCCCCce---eeEe-eCCCCeE--EEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 86 GISFSS-DDKIIASVGLDKKLYTYDPGSRRP---SSCI-TYEAPFS--SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 86 slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~---v~~~-~h~~~I~--slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
++.... ++.+|++.+.+|+|++||.+.-++ +... +|...-. -+..++....|++++.|...+||.++.+ +.+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl 381 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLL 381 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-cee
Confidence 998877 889999999999999999997666 4443 3433222 2334456678888999999999999987 344
Q ss_pred EEEeec--CCCCCeeEEEEcc
Q 006360 159 TVLRAC--SSSEAVSSLCWQR 177 (648)
Q Consensus 159 ~~l~~~--~h~~~VtsLafsp 177 (648)
..+... .....+.+++|..
T Consensus 382 ~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccCCCCccccccccceehhc
Confidence 444332 2223456666653
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=9.4e-06 Score=90.66 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=115.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc---------------eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGA---------------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~---------------~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IW 65 (648)
+||.+..+|++|+.||.++|..+.+.. .-+++.+ |...|..+.|+.+.+ .|-+...+|.|.+|
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~Q-KLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQ-KLTTSDTSGLIIVW 98 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccc-cccccCCCceEEEE
Confidence 488889999999999999999876432 1124444 778889999998877 78888999999999
Q ss_pred ECCCCCceeEEe-ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC
Q 006360 66 DTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG 144 (648)
Q Consensus 66 Dl~t~~~~v~~l-~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG 144 (648)
-+-.+......+ ...+.-|.+++|+.||..|+.+-.||.|.+=.+...++...--.......+.|++|...++.+-.+|
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang 178 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG 178 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence 985554221222 2345678999999999999999999998887766544332111233455788999999999999999
Q ss_pred eEEEEECCC
Q 006360 145 RVVFYDIRG 153 (648)
Q Consensus 145 ~V~IWDl~s 153 (648)
.+++||...
T Consensus 179 e~hlydnqg 187 (1189)
T KOG2041|consen 179 ETHLYDNQG 187 (1189)
T ss_pred cEEEecccc
Confidence 999999874
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=5.6e-07 Score=102.06 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=130.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ 79 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg-~V~IWDl~t~~~~v~~l~~ 79 (648)
||+-+.++|+.|+..|.|++|++.+|.....+.+ |...|+.|.=+.+|..+|.+++... -..+|+........+.+.+
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHhccccccCccccccc
Confidence 5788889999999999999999999998888876 7788888888889986666555555 5789999654333444443
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-----~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
-.++.|+.....-+.|.......+||++++..+.++ .....-++..|+|+..+|+ +|| .+||++..
T Consensus 1187 ----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1187 ----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH
Confidence 467888864444444555567899999998766542 1233347889999887765 566 68999986
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCCcccc
Q 006360 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (648)
Q Consensus 155 ~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~~ss~ 217 (648)
+.+..+..+ . .-..=.|+|+|.-++..+ .|||+|.|.-.+++
T Consensus 1258 -~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----------------EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1258 -EAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----------------EIWDMRTFKLLHSV 1299 (1516)
T ss_pred -HHHhhhhhh--e-ecccccccCCCceEEeec-----------------hhhhhHHHHHHhcC
Confidence 333333322 1 112235888776665541 48999998876654
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.19 E-value=0.00011 Score=74.32 Aligned_cols=147 Identities=18% Similarity=0.119 Sum_probs=103.0
Q ss_pred EEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-E-EeccCCCCeEE
Q 006360 9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-S-WLKQHSAPTAG 86 (648)
Q Consensus 9 Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v-~-~l~~H~~~V~s 86 (648)
+..++.|.+++++++.-+..-..+.... -.+..+.++++++ ++++.++...|..|.++.....+ . ......+.-.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccc-cceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 4456667777777764332222121111 2367789999998 78888999999999996543222 2 33444556678
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCcee-eEe-----eCCCCeEEEEEeCCCC--EEEEEEcCCeEEEEECCCCCCc
Q 006360 87 ISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-----TYEAPFSSLAFIDDDW--ILTAGTSNGRVVFYDIRGKPQP 157 (648)
Q Consensus 87 lafsPdg~~LaSgs~Dg~I~IWDl~tgk~v-~~~-----~h~~~I~slafsPdG~--~Lasgs~DG~V~IWDl~s~~~~ 157 (648)
..|+.....+|++..||++.|||++..... ... .|.+.+..+.|++.|. +|+..-.-+.+++.|+++....
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 899999999999999999999999875432 222 3889999999998543 4555556678999999987543
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.18 E-value=0.00044 Score=70.88 Aligned_cols=193 Identities=13% Similarity=0.171 Sum_probs=119.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCC--ceeEE--EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006360 2 YNCKDEHLASISLSGDLILHNLASG--AKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg--~~i~~--l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l 77 (648)
.+.||+.||+. .|..|.|-..++. ..+.+ +........+-++|+||+. +||.+...|+|++||+.+... ..+
T Consensus 5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~l--f~I 80 (282)
T PF15492_consen 5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSEL--FVI 80 (282)
T ss_pred ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEeccccee--EEc
Confidence 46788888765 6778888766542 22222 2222344567799999998 899999999999999987542 222
Q ss_pred cc-------CCCCeEEEEEccC------CCEEEEEeCCCeEEEEeCCCC-----ceeeEe----eCCCCeEEEEEeCCCC
Q 006360 78 KQ-------HSAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSR-----RPSSCI----TYEAPFSSLAFIDDDW 135 (648)
Q Consensus 78 ~~-------H~~~V~slafsPd------g~~LaSgs~Dg~I~IWDl~tg-----k~v~~~----~h~~~I~slafsPdG~ 135 (648)
.. -...|..+.|... ...|++...+|.++-|-+..+ +....+ .+...|.++.|+|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 2346777777652 235777788888877765322 222222 2577899999999888
Q ss_pred EEEEEEc----CC-------eEEEEECCCCCCceEEEee--------------------------cCCCCCeeEEEEccC
Q 006360 136 ILTAGTS----NG-------RVVFYDIRGKPQPLTVLRA--------------------------CSSSEAVSSLCWQRA 178 (648)
Q Consensus 136 ~Lasgs~----DG-------~V~IWDl~s~~~~~~~l~~--------------------------~~h~~~VtsLafspd 178 (648)
+|++|+. ++ -+..|.+-+...-.+.+.. ......|..|..+||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 8777653 11 2666766443211111110 012445666666665
Q ss_pred CCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 179 KPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 179 g~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
| .+|++...+|.|.+|++-.
T Consensus 241 g------------~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 241 G------------SLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred C------------CEEEEEEcCCeEEEEecCc
Confidence 4 4555557799999999853
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=4.3e-06 Score=86.86 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=117.3
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-----ceeeE
Q 006360 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----RPSSC 118 (648)
Q Consensus 44 afspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg-----k~v~~ 118 (648)
+|+-+-.-+-++.+.+..|-+-|+.++-. ..+ ..+..|.++.|...+++++.|...|.|..+|++.+ .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~--qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ--QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc--ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56543322335566778888888888752 333 36678999999988999999999999999999864 46677
Q ss_pred eeCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006360 119 ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (648)
Q Consensus 119 ~~h~~~I~slafsP-dG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~ 197 (648)
+-|...|+++..-. ++++|++.+.+|+|++||++..++...+....+|-..-.-+-++- ...+.+++++
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v----------~~eeg~I~s~ 364 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV----------KEEEGSIFSV 364 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc----------ccccceEEEc
Confidence 78999999998776 788999999999999999997654333444336654433333322 2355566777
Q ss_pred eCCCeEEcCCCCCCCCcccccc
Q 006360 198 AVGDSILMPDPLPSVTTSSVSL 219 (648)
Q Consensus 198 s~D~~IkvWDlr~~~~~ss~ss 219 (648)
+.|...+||.++.-.-..++..
T Consensus 365 GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cCeeEEEEEecccCceeeccCC
Confidence 7899999999885554444433
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=5.2e-06 Score=90.24 Aligned_cols=175 Identities=21% Similarity=0.277 Sum_probs=114.9
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEccCCCEEEEEeCCC
Q 006360 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDK 103 (648)
Q Consensus 30 ~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~------~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg 103 (648)
+.+.+ |...|+.++--.+.+ -|++++.|++|++|.++... ........|+.+|+++.|..+-++|+++ |+
T Consensus 729 ~nf~G-H~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTG-HQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred ecccC-cHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 34444 555566554443443 69999999999999985321 1244667899999999999888887755 78
Q ss_pred eEEEEeCCCCceeeEe---eCCCCeEEEEEeC--CCCEEEEE-EcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEE
Q 006360 104 KLYTYDPGSRRPSSCI---TYEAPFSSLAFID--DDWILTAG-TSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCW 175 (648)
Q Consensus 104 ~I~IWDl~tgk~v~~~---~h~~~I~slafsP--dG~~Lasg-s~DG~V~IWDl~s~~~--~~~~l~~~~h~~~VtsLaf 175 (648)
.|.+||.--++.+..+ ...+.+..+..-+ +..++.+| +...+|+++|.+.... .+++....+....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 8999999888766533 1223333232222 44455555 6788999999997532 2333333455677999999
Q ss_pred ccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 176 QRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 176 spdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.+.|++++.+ -+.+...++..-....|.-|.+.
T Consensus 885 a~~GN~lAa~-LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 885 ADKGNKLAAA-LSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred ccCcchhhHH-hcCCcEEEEecCCCceeccCCcc
Confidence 9999999887 23334444444444457778553
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.16 E-value=0.0008 Score=70.66 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=134.3
Q ss_pred CccC-CCCEEEEEECCCc-EEEEECCCCceeEEEeCCCCCc-EEEEEEccCCCeEEEEEe-----CCCeEEEEECCCCCc
Q 006360 1 MYNC-KDEHLASISLSGD-LILHNLASGAKAAELKDPNEQV-LRVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSP 72 (648)
Q Consensus 1 AFSp-dG~~Lasgs~DG~-V~IwDl~sg~~i~~l~~~~~~~-V~~Vafspdg~~lLaSgs-----~Dg~V~IWDl~t~~~ 72 (648)
+.+| ++..++.+-.-|+ +.+||..+++....+......- .-.-+|++||+ +|++.- ..|.|-|||....-.
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcE
Confidence 3567 4556777777665 7789999999888776532221 12357999999 455532 357899999985555
Q ss_pred eeEEeccCCCCeEEEEEccCCCEEEEEeC------------------CCeEEEEeCCCCceeeEee-----CCCCeEEEE
Q 006360 73 KVSWLKQHSAPTAGISFSSDDKIIASVGL------------------DKKLYTYDPGSRRPSSCIT-----YEAPFSSLA 129 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsPdg~~LaSgs~------------------Dg~I~IWDl~tgk~v~~~~-----h~~~I~sla 129 (648)
++..+..|.-....+.+.||++.|+++.. +-.|.+.|..+|+.+.... |.-.|.-++
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa 169 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA 169 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE
Confidence 57777888777889999999987776532 2357778888998776642 566899999
Q ss_pred EeCCCCEEEEEEcCCe-------EEEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 006360 130 FIDDDWILTAGTSNGR-------VVFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (648)
Q Consensus 130 fsPdG~~Lasgs~DG~-------V~IWDl~s~~~~~~~l~~~-----~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~ 197 (648)
+.++|..++..-..|. |.+++.... +..+... .-.+.|-+|+++.++.+++..+
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts----------- 235 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS----------- 235 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC-----------
Confidence 9999987776665543 555554432 2222211 3457899999999877665543
Q ss_pred eCCCeEEcCCCCCCCC
Q 006360 198 AVGDSILMPDPLPSVT 213 (648)
Q Consensus 198 s~D~~IkvWDlr~~~~ 213 (648)
-..+.+.+||...-.-
T Consensus 236 PrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRL 251 (305)
T ss_pred CCCCEEEEEECCCCCE
Confidence 3356677776654443
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=6.5e-05 Score=82.32 Aligned_cols=196 Identities=10% Similarity=0.185 Sum_probs=117.9
Q ss_pred ccCCCCEEEEEEC-----------CCcEEEEECCCCceeEEEeCC--CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 006360 2 YNCKDEHLASISL-----------SGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (648)
Q Consensus 2 FSpdG~~Lasgs~-----------DG~V~IwDl~sg~~i~~l~~~--~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~ 68 (648)
|||+.+||++-+. ...++|||+.+|...+.+... .......+.|+.|++ ++|.-.. ..|.||+..
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETP 334 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecC
Confidence 8999999998542 247999999999988877752 233345678999998 5655444 678899875
Q ss_pred CCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCC-----e---------------------------------------
Q 006360 69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----K--------------------------------------- 104 (648)
Q Consensus 69 t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg-----~--------------------------------------- 104 (648)
.-.. +..-.-.-..|....|+|.+++||.=...- .
T Consensus 335 sf~l-ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 335 SFML-LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred ceee-ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEE
Confidence 4321 111111223466677777766666422110 1
Q ss_pred -------------EEEEeCCCCc-eeeEeeCCCCeEEEEEeCCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCC
Q 006360 105 -------------LYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSS 167 (648)
Q Consensus 105 -------------I~IWDl~tgk-~v~~~~h~~~I~slafsPdG~~Lasgs~---DG~V~IWDl~s~~~~~~~l~~~~h~ 167 (648)
+-|+.++... ++..+.....|...+|-|.|+.+++-+. ..+|.+|.+.+.......+... ..
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-cc
Confidence 1111111110 1112224556778899999988876554 3569999988422211222211 12
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 168 ~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
...+.|-|+|.|++++.+. ++ +..+.+.++|...
T Consensus 493 ~~~N~vfwsPkG~fvvva~-------l~--s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAA-------LV--SRRGDLEFYDTDY 526 (698)
T ss_pred cccceEEEcCCCcEEEEEE-------ec--ccccceEEEecch
Confidence 5577899999999998872 22 2567788888754
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=1.2e-05 Score=87.44 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=104.5
Q ss_pred CCCEEEEEECCCcEEEEECCC-------CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006360 5 KDEHLASISLSGDLILHNLAS-------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~s-------g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l 77 (648)
+.+-+++++.|.+|++|.++. ..+..+++. |...|+++-|..+-+ .++ +.|+-|++||.--+....+..
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr-~i~--ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLR-SIA--SCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccc-eee--eccCcceeecccccchhHhhh
Confidence 456788999999999999863 225556665 788899999998876 444 567999999985554322121
Q ss_pred c-cCCCCeEEEEEcc--CCCEE-EEEeCCCeEEEEeCCCCceeeEee------CCCCeEEEEEeCCCCEEEEEEcCCeEE
Q 006360 78 K-QHSAPTAGISFSS--DDKII-ASVGLDKKLYTYDPGSRRPSSCIT------YEAPFSSLAFIDDDWILTAGTSNGRVV 147 (648)
Q Consensus 78 ~-~H~~~V~slafsP--dg~~L-aSgs~Dg~I~IWDl~tgk~v~~~~------h~~~I~slafsPdG~~Lasgs~DG~V~ 147 (648)
. ...+.+..+..-+ +..++ +-|+...+|+++|.+.+.-+..+. ..+-+.+++..+.|++++++-.+|.|.
T Consensus 822 dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEE
Confidence 1 1122233333333 34443 444778899999999987665553 235588999999999999999999999
Q ss_pred EEECCCC
Q 006360 148 FYDIRGK 154 (648)
Q Consensus 148 IWDl~s~ 154 (648)
+.|.+++
T Consensus 902 ~LDaR~G 908 (1034)
T KOG4190|consen 902 ILDARNG 908 (1034)
T ss_pred EEecCCC
Confidence 9999998
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.13 E-value=0.00068 Score=69.24 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=106.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeC---C-CCCcEEEEEEccCCCeEEEEEeCC--------CeEEEEECCCCC
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKD---P-NEQVLRVLDYSRNSRHLLVTAGDD--------GTLHLWDTTGRS 71 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~---~-~~~~V~~Vafspdg~~lLaSgs~D--------g~V~IWDl~t~~ 71 (648)
++ ..|+.+..+ .+.++|+.+++....+.. . .....+.+++.++|+ +.++.... |.|+.++.. ++
T Consensus 50 ~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~ 125 (246)
T PF08450_consen 50 PD-GRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK 125 (246)
T ss_dssp TT-SEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE
T ss_pred cC-CEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce
Confidence 44 445555554 466669888754433332 1 456678999999998 66665443 557777777 33
Q ss_pred ceeEEeccCCCCeEEEEEccCCCEEE-EEeCCCeEEEEeCCCCc--e--eeEe-e--C-CCCeEEEEEeCCCCEEEEEEc
Q 006360 72 PKVSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRR--P--SSCI-T--Y-EAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 72 ~~v~~l~~H~~~V~slafsPdg~~La-Sgs~Dg~I~IWDl~tgk--~--v~~~-~--h-~~~I~slafsPdG~~Lasgs~ 142 (648)
+..+...-...+.|+|+|+++.|+ +-+..+.|..||+.... . ...+ . . .+....+++..+|++.++...
T Consensus 126 --~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 126 --VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp --EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred --EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 333344455689999999998765 56677889999986322 1 1222 1 2 224788999999998888888
Q ss_pred CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006360 143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176 (648)
Q Consensus 143 DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafs 176 (648)
.+.|.++|.+. +.+..+... ...+++++|-
T Consensus 204 ~~~I~~~~p~G--~~~~~i~~p--~~~~t~~~fg 233 (246)
T PF08450_consen 204 GGRIVVFDPDG--KLLREIELP--VPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEETTS--CEEEEEE-S--SSSEEEEEEE
T ss_pred CCEEEEECCCc--cEEEEEcCC--CCCEEEEEEE
Confidence 99999999983 345555533 3489999994
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.11 E-value=0.00069 Score=71.14 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=112.4
Q ss_pred CccCCCCEEEEEEC-----CCcEEEEECC-CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe------CCC--------
Q 006360 1 MYNCKDEHLASISL-----SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------DDG-------- 60 (648)
Q Consensus 1 AFSpdG~~Lasgs~-----DG~V~IwDl~-sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs------~Dg-------- 60 (648)
+|++||++|++.-. .|.|-|||.. .-+.+.++.. ++-.-+.+.+.||++.+++.-+ +.|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 59999999987633 4789999998 5667778875 4434466889999975444321 112
Q ss_pred ---eEEEEECCCCCceeE-Ee--ccCCCCeEEEEEccCCCEEEEEeCCC-------eEEEEeCCCCceeeEe--------
Q 006360 61 ---TLHLWDTTGRSPKVS-WL--KQHSAPTAGISFSSDDKIIASVGLDK-------KLYTYDPGSRRPSSCI-------- 119 (648)
Q Consensus 61 ---~V~IWDl~t~~~~v~-~l--~~H~~~V~slafsPdg~~LaSgs~Dg-------~I~IWDl~tgk~v~~~-------- 119 (648)
.+.+.|..+++..-+ .+ ..|...|..+++.++|..++.+-..| .|.+++... .+..+
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~ 213 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWR 213 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHH
Confidence 344445555553211 23 34777899999999988777665544 344444333 22222
Q ss_pred eCCCCeEEEEEeCCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 120 TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 120 ~h~~~I~slafsPdG~~Lasgs-~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
...+.|-+|+++.++.++++.+ ..+.+.+||..++. .+.. ..-..+..|+-.+++ ++++.
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~----~~l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGS----VPLPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-Eeec----cccCceeeeeecCCc-eEEeC
Confidence 2467899999999998776555 67889999999873 2221 123445666666554 44443
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00024 Score=81.52 Aligned_cols=180 Identities=17% Similarity=0.276 Sum_probs=122.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCC---C-
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGR---S- 71 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg-----~V~IWDl~t~---~- 71 (648)
+|++.+..+|.|+.+|.|.+++- .-+.+..++.+....|. .-|.-+++++|++.+.|+ .|+|||++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~-~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQ-FLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhh-HhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46788889999999999998883 55565777765544344 345556656888877664 4899998432 2
Q ss_pred ce-e--EEeccC-----CCCeEEEEEccCCCEEEEEeCCCeEEEEeCC---CC--ceeeEeeCCCCeEEEEEeCCCCEEE
Q 006360 72 PK-V--SWLKQH-----SAPTAGISFSSDDKIIASVGLDKKLYTYDPG---SR--RPSSCITYEAPFSSLAFIDDDWILT 138 (648)
Q Consensus 72 ~~-v--~~l~~H-----~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~---tg--k~v~~~~h~~~I~slafsPdG~~La 138 (648)
+. + +.+..| ..++.+++.+.+-+.||+|-.+|.|..+.-. .. +..-......+|+.+++..|+..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 11 1 223332 3567889999999999999999999988532 11 1122224678999999999988744
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC-eEEE
Q 006360 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP-VFID 184 (648)
Q Consensus 139 sgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~-~Las 184 (648)
....-..|.+|.+.+.....+++. .|...+.|..|++... ++++
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--cCCccceeeecCCCCccEEEe
Confidence 333445699999996642334455 6778899999987655 4443
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.09 E-value=0.00013 Score=88.09 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=123.7
Q ss_pred cCCCCEEEEEECCCcEEEE----ECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----------
Q 006360 3 NCKDEHLASISLSGDLILH----NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---------- 68 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~Iw----Dl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~---------- 68 (648)
-++...++.+..+|.|.++ +..+ ...++.+.-...|.+++|+||++ +|+....+++|.+.+..
T Consensus 84 l~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~ 160 (928)
T PF04762_consen 84 LADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLD 160 (928)
T ss_pred ccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecC
Confidence 3566677788889999998 4432 23334444457899999999999 77777778887765321
Q ss_pred ---CCC---------ceeEEecc------------------------CCCCeEEEEEccCCCEEEEEeC---C---CeEE
Q 006360 69 ---GRS---------PKVSWLKQ------------------------HSAPTAGISFSSDDKIIASVGL---D---KKLY 106 (648)
Q Consensus 69 ---t~~---------~~v~~l~~------------------------H~~~V~slafsPdg~~LaSgs~---D---g~I~ 106 (648)
-+. .+-..+.+ +.+.-..|+|-.||.++++.+- + ..|+
T Consensus 161 ~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iR 240 (928)
T PF04762_consen 161 SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIR 240 (928)
T ss_pred ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEE
Confidence 000 00001100 2234467899999999998765 2 4899
Q ss_pred EEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeE
Q 006360 107 TYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVF 182 (648)
Q Consensus 107 IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~---DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~L 182 (648)
+|+-. |....+-. ..+--.+++|.|.|++||+... ...|.+|.-++...-...+........|..|.|+.|+.+|
T Consensus 241 Vy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iL 319 (928)
T PF04762_consen 241 VYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEIL 319 (928)
T ss_pred EECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEE
Confidence 99965 65444332 3333457899999999998765 3558888887754433444433456789999999999999
Q ss_pred EEeccCCCCeEEEEee
Q 006360 183 IDETTCKAETALLGGA 198 (648)
Q Consensus 183 as~~~~~~~~~lvs~s 198 (648)
|... .+...+++.+
T Consensus 320 Av~~--~~~vqLWt~~ 333 (928)
T PF04762_consen 320 AVWL--EDRVQLWTRS 333 (928)
T ss_pred EEEe--cCCceEEEee
Confidence 8863 2334444433
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.08 E-value=0.00023 Score=77.54 Aligned_cols=192 Identities=12% Similarity=0.135 Sum_probs=126.5
Q ss_pred ccCCCCEEEEEECCC---------------cEEEEECCCCceeEEEeCCCCC--cEEEEEEccCCCeEEEEEeCCCeEEE
Q 006360 2 YNCKDEHLASISLSG---------------DLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTLHL 64 (648)
Q Consensus 2 FSpdG~~Lasgs~DG---------------~V~IwDl~sg~~i~~l~~~~~~--~V~~Vafspdg~~lLaSgs~Dg~V~I 64 (648)
|+|+++||++-...+ ++.+||..+|..+..+...... ....+.|+-++. +++-. ....++|
T Consensus 79 fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i 156 (561)
T COG5354 79 FSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYI 156 (561)
T ss_pred cCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhh-ccCeEEE
Confidence 789999998865433 5999999999999888764433 233688998886 34333 4567999
Q ss_pred EECCCCCceeEEeccC-CCCeEEEEEccC--CCEEEE-----EeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCC
Q 006360 65 WDTTGRSPKVSWLKQH-SAPTAGISFSSD--DKIIAS-----VGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDW 135 (648)
Q Consensus 65 WDl~t~~~~v~~l~~H-~~~V~slafsPd--g~~LaS-----gs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~ 135 (648)
+++ +......-+..- ...|....|+|. +..|+. .+.++.+++|.+..+..+.... ....-..+.|++.|+
T Consensus 157 ~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~ 235 (561)
T COG5354 157 HEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK 235 (561)
T ss_pred Eec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence 998 332111111111 256888999994 445554 4667789999998766554432 233335688999998
Q ss_pred EEEEEE-----------cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEE
Q 006360 136 ILTAGT-----------SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 136 ~Lasgs-----------~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~Ik 204 (648)
+|++-. ....++|+++.....++.. ...++|...+|.|+++.+++ ++|..+..+-
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F~v----------i~g~~pa~~s 301 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRFAV----------ISGYMPASVS 301 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCceeE----------Eeccccccee
Confidence 877432 1245899999865433332 45789999999997765544 3445566777
Q ss_pred cCCCCC
Q 006360 205 MPDPLP 210 (648)
Q Consensus 205 vWDlr~ 210 (648)
++|++.
T Consensus 302 ~~~lr~ 307 (561)
T COG5354 302 VFDLRG 307 (561)
T ss_pred eccccc
Confidence 777663
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.03 E-value=0.0011 Score=71.42 Aligned_cols=143 Identities=6% Similarity=0.027 Sum_probs=96.2
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCC
Q 006360 5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGR 70 (648)
Q Consensus 5 dG~~Lasgs~D-----G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs---------~Dg~V~IWDl~t~ 70 (648)
++.++++.... +.|.+.|..+++.+..+....... .+ ++||++.++++.. .+..|.+||..+.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 34445444333 899999999999999888544333 34 9999997677777 7899999999998
Q ss_pred CceeEEeccC-------CCCeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEE
Q 006360 71 SPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT 141 (648)
Q Consensus 71 ~~~v~~l~~H-------~~~V~slafsPdg~~LaSgs~--Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs 141 (648)
+.. ..+.-- ......++++|||++|+.... +..|.++|+.+++.+..+...+...-...+.+..++. +
T Consensus 88 ~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~ 164 (352)
T TIGR02658 88 LPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH--C 164 (352)
T ss_pred cEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE--e
Confidence 853 333321 223457899999999998763 6799999999999998886544333333333333322 3
Q ss_pred cCCeEEEEECCC
Q 006360 142 SNGRVVFYDIRG 153 (648)
Q Consensus 142 ~DG~V~IWDl~s 153 (648)
.||......+..
T Consensus 165 ~Dg~~~~v~~d~ 176 (352)
T TIGR02658 165 RDGSLAKVGYGT 176 (352)
T ss_pred ecCceEEEEecC
Confidence 455555544443
No 299
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.02 E-value=1.5e-06 Score=96.38 Aligned_cols=195 Identities=14% Similarity=0.178 Sum_probs=129.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCcee-EEEeCCCCCcEEEEEEccCCCeEEEEEe----CCCeEEEEECCCC--Cce--eE
Q 006360 5 KDEHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGR--SPK--VS 75 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i-~~l~~~~~~~V~~Vafspdg~~lLaSgs----~Dg~V~IWDl~t~--~~~--v~ 75 (648)
|...++.|..+|.|.+-.++...-- .++...+...+++++|++-+.+.||+|- .|..+.|||+.+. .++ ..
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 3356788999999999887654332 4455556778999999987655677763 3567999999765 211 11
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeC-CCCEEEEEEcCCeEEEEE-CCC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD-IRG 153 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsP-dG~~Lasgs~DG~V~IWD-l~s 153 (648)
...+.......+||..+.+++++|...+.+.++|++........-....+..+..+| .+++++.-. ||.|.+|| .++
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence 222244556789999999999999999999999998533222111334566677778 566776554 99999999 666
Q ss_pred CCCceEEEeecCC--CCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 154 KPQPLTVLRACSS--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 154 ~~~~~~~l~~~~h--~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
-+.++..+..... -..+..++|.|.. .+.+.+..-..++|+++|+.-
T Consensus 228 ienpl~~i~~~~N~~~~~l~~~aycPtr----------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPKQLFALAYCPTR----------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hccHHHHHhhCCCCcccceeeEEeccCC----------cchhhhhccCcceEEEecccc
Confidence 5555444431111 1248999999943 333333334467888888863
No 300
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=0.00024 Score=79.12 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=85.0
Q ss_pred EEEEccCCCeEEEEE----eCCCe----EEEEECCCCCce--eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 006360 42 VLDYSRNSRHLLVTA----GDDGT----LHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (648)
Q Consensus 42 ~Vafspdg~~lLaSg----s~Dg~----V~IWDl~t~~~~--v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~ 111 (648)
++.|+....+.+.+. +.+|. -++|++...+.. ...-......|.|++++|+...++.|+.||.|.+||..
T Consensus 210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~ 289 (545)
T PF11768_consen 210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT 289 (545)
T ss_pred EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC
Confidence 468887665566654 33443 457887554321 11223567889999999999999999999999999987
Q ss_pred CCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 112 SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 112 tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
.+... .....-..+.++|+|+|.++++|+..|.+.+||+.-..
T Consensus 290 ~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 290 RGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 76433 22455667899999999999999999999999998653
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.99 E-value=2.1e-05 Score=56.38 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=34.5
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWD 109 (648)
+..+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 678899999999999999999999999999999998
No 302
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00018 Score=76.45 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=73.1
Q ss_pred EEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc-CCCEE
Q 006360 18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKII 96 (648)
Q Consensus 18 V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP-dg~~L 96 (648)
|++.+..+.+....+. .++..|+.++|+|..+.++..++.+.+|+|.|+.+... +..+..| ..+++++|.- +.++|
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCccee
Confidence 4444444444444333 36778999999998877899999999999999998874 5566666 7899999988 56788
Q ss_pred EEEeCCCeEEEEeCCCCc
Q 006360 97 ASVGLDKKLYTYDPGSRR 114 (648)
Q Consensus 97 aSgs~Dg~I~IWDl~tgk 114 (648)
+.|...|.|.+||++..+
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 888899999999998654
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.94 E-value=0.00015 Score=74.64 Aligned_cols=148 Identities=11% Similarity=0.187 Sum_probs=101.7
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCC-----CCeEEEEEcc-CCCEEEEEeCCCeEE
Q 006360 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLY 106 (648)
Q Consensus 35 ~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v~~l~~H~-----~~V~slafsP-dg~~LaSgs~Dg~I~ 106 (648)
.|...|.++.|+.|.+ .++ .++|-.|.+|++.-.. -.+.-++.|. .-|++..|+| ....+...+..|.|+
T Consensus 170 aH~yhiNSiS~NsD~e-t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKE-TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchh-eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3556677888888876 344 4678899999985432 2233445553 4588999999 677888888999999
Q ss_pred EEeCCCCcee----eEe-------------eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-----
Q 006360 107 TYDPGSRRPS----SCI-------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----- 164 (648)
Q Consensus 107 IWDl~tgk~v----~~~-------------~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~----- 164 (648)
+.|++..... ..+ .....|..+.|+++|++|++-.. -+|+|||++..+.|++.+..+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 9999853211 111 12345788999999999988765 469999999988888877533
Q ss_pred -----CCCCCee---EEEEccCCCeEEEe
Q 006360 165 -----SSSEAVS---SLCWQRAKPVFIDE 185 (648)
Q Consensus 165 -----~h~~~Vt---sLafspdg~~Las~ 185 (648)
.....|. .+.|+.|.+.+.++
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCccccccc
Confidence 1123333 46676666665555
No 304
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00025 Score=77.95 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=116.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------CCCeEEEEECCCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------DDGTLHLWDTTGR 70 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs-----------~Dg~V~IWDl~t~ 70 (648)
|||.|.||++--..| |.+|--.+-..++.+. |. .|.-+.|+|+.+ +|++-+ ....++|||+.++
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcccc
Confidence 899999999987766 8899876666666665 44 356689999998 787743 2257999999988
Q ss_pred CceeEEecc---CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEEEEcC---
Q 006360 71 SPKVSWLKQ---HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSN--- 143 (648)
Q Consensus 71 ~~~v~~l~~---H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Lasgs~D--- 143 (648)
..+ +.+.. ....---+.|+.|++++|.-..| .|.||+.....++-.-. .-..|....|+|.+++||.-...
T Consensus 293 ~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chh-cceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 743 23322 22222346899999999988775 58899876533221111 34568888999998888864431
Q ss_pred --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 144 --G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
..+.|..+.+. +.++... -|.-.-..|.|..+|.||+.-
T Consensus 371 ~parvtL~evPs~-~~iRt~n--lfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 371 IPARVTLMEVPSK-REIRTKN--LFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CcceEEEEecCcc-ceeeecc--ceeeeccEEEeccCCcEEEEE
Confidence 34667766655 2222222 122223457788888888775
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.00023 Score=80.74 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=129.7
Q ss_pred EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006360 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (648)
Q Consensus 8 ~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafsp---dg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V 84 (648)
+||++...|+|.+||+..+..+..+. ++.+.+..++|-+ +.+.+|++-....+|.+|+..+++...+.-.. ....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iL 158 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEIL 158 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-Ccce
Confidence 57888889999999999888888887 4677788888865 45567888888899999999998853332223 3456
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEeCCC-------CceeeEe-eCCC-------------------------CeEEEEE
Q 006360 85 AGISFSS-DDKIIASVGLDKKLYTYDPGS-------RRPSSCI-TYEA-------------------------PFSSLAF 130 (648)
Q Consensus 85 ~slafsP-dg~~LaSgs~Dg~I~IWDl~t-------gk~v~~~-~h~~-------------------------~I~slaf 130 (648)
.|+.+.| |.++++.-+..|.|.+.+.-. ++.+++. .|.. .+..++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 7899999 888888888888888877532 2222221 1111 0123567
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 131 sPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
+|..+.++.......+.|+|+.-. +++.++. -..+.+.-+.|-|++ ....+++...||.+.+|-.+
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvp--ier~~akfv~vlP~~----------~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVP--IERGGAKFVDVLPDP----------RRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhh-ceeEEEE--eccCCcceeEeccCC----------CcceEEEEecCCeEEEEEee
Confidence 887666666777788999999876 4444444 234556667777754 44455666677877777554
No 306
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.89 E-value=0.0015 Score=74.39 Aligned_cols=210 Identities=11% Similarity=0.016 Sum_probs=126.3
Q ss_pred ccCCCCEEEE-EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe-----------------------
Q 006360 2 YNCKDEHLAS-ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG----------------------- 57 (648)
Q Consensus 2 FSpdG~~Las-gs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs----------------------- 57 (648)
+.+||+.+.. .-..+.+.+.|..+.+....+.- ......++++++++.+++++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3467765533 33346788888888777766653 223345677888875444431
Q ss_pred ----------------CCCeEEEEECCC----CCceeEEeccCCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCce-
Q 006360 58 ----------------DDGTLHLWDTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRP- 115 (648)
Q Consensus 58 ----------------~Dg~V~IWDl~t----~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~-Dg~I~IWDl~tgk~- 115 (648)
.++.|.+.|..+ ... +.....-....+.+.++|||+++++++. +.+|.++|+.+.+.
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 124577777765 222 2233333445789999999998877665 78999999987552
Q ss_pred -----------eeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC------CCC---ceEEEee---cCCCCCeeE
Q 006360 116 -----------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG------KPQ---PLTVLRA---CSSSEAVSS 172 (648)
Q Consensus 116 -----------v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s------~~~---~~~~l~~---~~h~~~Vts 172 (648)
+............+|+++|+...+-.-|..|..||+.. +++ .+..+.. .+|.....+
T Consensus 357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g 436 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMG 436 (635)
T ss_pred hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCC
Confidence 33333344445678999998888888899999999975 111 1222221 133322223
Q ss_pred EEEccCCCeEEEeccCCC------------CeEEEEeeCCCeEEcCCCCCCCCc
Q 006360 173 LCWQRAKPVFIDETTCKA------------ETALLGGAVGDSILMPDPLPSVTT 214 (648)
Q Consensus 173 Lafspdg~~Las~~~~~~------------~~~lvs~s~D~~IkvWDlr~~~~~ 214 (648)
=.-.++|+||++....+. ...|+--+.|.-.-++|--.+..+
T Consensus 437 ~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p~~~EP 490 (635)
T PRK02888 437 ETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHDGPTFAEP 490 (635)
T ss_pred CcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEecCCCCCCC
Confidence 334688898888533222 223444455665666666544444
No 307
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.89 E-value=0.00052 Score=83.05 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=110.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCcee------------------------EEEeC----------------------
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKA------------------------AELKD---------------------- 34 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i------------------------~~l~~---------------------- 34 (648)
+||||++.|+....+++|.+.+- +...+ ..|.|
T Consensus 127 ~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 127 SWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred EECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 59999999999999999888753 21111 11111
Q ss_pred --CCCCcEEEEEEccCCCeEEEEEeC---C---CeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeC---CC
Q 006360 35 --PNEQVLRVLDYSRNSRHLLVTAGD---D---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DK 103 (648)
Q Consensus 35 --~~~~~V~~Vafspdg~~lLaSgs~---D---g~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~---Dg 103 (648)
.+...+ .|+|-.||. +||+.+. + ..++||+-++.- ......-.+--.+++|.|.|++|++.-. ..
T Consensus 206 ~s~dd~~~-~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 206 LSWDDGRV-RISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred cccCCCce-EEEECCCCc-EEEEEEEEcCCCceeEEEEECCCceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 011223 478999999 5665443 3 579999987321 2222222333457899999999998765 34
Q ss_pred eEEEEeCCCCceeeEe-----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006360 104 KLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 104 ~I~IWDl~tgk~v~~~-----~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspd 178 (648)
.|.+|.- +|.....+ .....|..+.|+.|+.+|+....|. |.+|-..+..--++.--.+.....+..+.|+|.
T Consensus 282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 6777763 34333222 2456799999999999999988766 999999886322222222234455666999995
Q ss_pred C
Q 006360 179 K 179 (648)
Q Consensus 179 g 179 (648)
.
T Consensus 360 ~ 360 (928)
T PF04762_consen 360 K 360 (928)
T ss_pred C
Confidence 4
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.89 E-value=0.0015 Score=65.52 Aligned_cols=185 Identities=15% Similarity=0.082 Sum_probs=110.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS--- 81 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~--- 81 (648)
++.++++++.++.|+.||..+|+.+..+..... ..... .. ++. .++.+..++.|+.+|..+++..........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~-~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VV-DGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EE-ETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-ee-ccc-ccccccceeeeEecccCCcceeeeecccccccc
Confidence 567788888999999999999999888775221 11111 22 233 466666888999999988885433122221
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCC-C----------eEEEEEeCCCCEEEEEEcCCeEEEEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA-P----------FSSLAFIDDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~-~----------I~slafsPdG~~Lasgs~DG~V~IWD 150 (648)
..........++..++.+..++.|..+|+++|+.+....... . +..-....++ .++.+..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 112222333348888889889999999999999876653221 1 1122222244 777788788644449
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCCCC
Q 006360 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 151 l~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
+.++... .... ...+..+ ... .++.+++.. .++.|..||+....
T Consensus 190 ~~tg~~~---w~~~--~~~~~~~-~~~-----------~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKL---WSKP--ISGIYSL-PSV-----------DGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEE---EEEC--SS-ECEC-EEC-----------CCTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCCCCEE---EEec--CCCccCC-cee-----------eCCEEEEEe-CCCEEEEEECCCCC
Confidence 9988422 2211 1112221 112 133344444 68999999987543
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=6.7e-05 Score=84.10 Aligned_cols=146 Identities=12% Similarity=0.183 Sum_probs=110.0
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------------eEEeccCCCCeEEEEEccCCCEEEEEe
Q 006360 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------------VSWLKQHSAPTAGISFSSDDKIIASVG 100 (648)
Q Consensus 35 ~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~--------------v~~l~~H~~~V~slafsPdg~~LaSgs 100 (648)
++....+|+.|+.... +|++|+.||.+++..+.+.... -+.+.+|.+.|.-+.|+.+.+.|-+..
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3456678999999887 8999999999999988543211 235789999999999999889999999
Q ss_pred CCCeEEEEeCCCCceeeEe---eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 101 LDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 101 ~Dg~I~IWDl~tgk~v~~~---~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
.+|.|.+|-+-.|.-...+ ..+..|.+++|+-||..|+..-.||.|.|=.+.+..---+.++ ......+.|++
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g~~l~hv~ws~ 166 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----GQLLAHVLWSE 166 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----hheccceeecc
Confidence 9999999999887644332 3567789999999999999999999988877766421111122 12234678888
Q ss_pred CCCeEEEe
Q 006360 178 AKPVFIDE 185 (648)
Q Consensus 178 dg~~Las~ 185 (648)
|.+.+...
T Consensus 167 D~~~~Lf~ 174 (1189)
T KOG2041|consen 167 DLEQALFK 174 (1189)
T ss_pred cHHHHHhh
Confidence 76655443
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.85 E-value=4.9e-05 Score=54.44 Aligned_cols=38 Identities=18% Similarity=0.539 Sum_probs=34.1
Q ss_pred ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006360 27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (648)
Q Consensus 27 ~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWD 66 (648)
+++..+.+ |...|.+|+|+|++. +|++++.|+.|+|||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 56778886 888999999999987 899999999999998
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.83 E-value=0.00088 Score=79.62 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=116.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC----CCCCce------
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT----TGRSPK------ 73 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl----~t~~~~------ 73 (648)
-+.+.|+.+..+|.|.+.|..+.... +.+.....|.+++|+||++ +++....++++.+-+. -..+..
T Consensus 78 ~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~ 154 (1265)
T KOG1920|consen 78 ADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPIAEKPLDADDER 154 (1265)
T ss_pred cccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccchhcccccccccc
Confidence 45667778888999999988765432 3333456788899999998 6777777777765432 000000
Q ss_pred ------------eEEeccCC---------------------CCeEEEEEccCCCEEEE-----EeCCCeEEEEeCCCCce
Q 006360 74 ------------VSWLKQHS---------------------APTAGISFSSDDKIIAS-----VGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 74 ------------v~~l~~H~---------------------~~V~slafsPdg~~LaS-----gs~Dg~I~IWDl~tgk~ 115 (648)
-..+.+.. +.=..|+|--||.++++ ....+.|++||.. |..
T Consensus 155 ~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L 233 (1265)
T KOG1920|consen 155 KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL 233 (1265)
T ss_pred ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence 01112110 11234899999999988 3334799999977 443
Q ss_pred eeEe-eCCCCeEEEEEeCCCCEEEEEE---cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006360 116 SSCI-TYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 116 v~~~-~h~~~I~slafsPdG~~Lasgs---~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las 184 (648)
-..- ...+--.+++|-|.|.++++-. .|+.|.+|..++...-..++........|..++|+.++..|+.
T Consensus 234 ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 234 NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 2222 2344456899999999998754 4667999998875443344444444455999999999888877
No 312
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.82 E-value=0.0019 Score=70.29 Aligned_cols=142 Identities=12% Similarity=0.163 Sum_probs=94.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V 84 (648)
.+..+++++.+|.|+.+|..+|+.+..+.... .....+.. ++. .++.++.++.|+.||..+++.. +.......+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~~--W~~~~~~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKEL--WRAKLSSEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCC-EEEEEcCCCEEEEEECCCCcEe--eeeccCcee
Confidence 35678888899999999999999988766422 22222222 344 5777888999999999888742 222222323
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeE------EEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS------SLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 85 ~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~------slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
.+.-.. .+..++.+..++.|+.||.++|+.+-.+....... +.... +..++.+..+|.|+.+|+++++
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 221111 35677778889999999999998876654333221 11121 3477888889999999998874
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00012 Score=83.43 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=111.6
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q 006360 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (648)
Q Consensus 37 ~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v 116 (648)
.+.+.|++++. + +|+-|..+|.|++++....- .....|... .-+|.++++|+.||+|.|..+.+.+..
T Consensus 39 ~D~is~~av~~--~-~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVHD--K-FFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhhc--c-eeeeccccceEEEEecCCcc---ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 34566666653 3 79999999999999997663 233445443 558999999999999999999999988
Q ss_pred eEeeCCCCeEEEEEeCC-----CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006360 117 SCITYEAPFSSLAFIDD-----DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (648)
Q Consensus 117 ~~~~h~~~I~slafsPd-----G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~ 191 (648)
..+....++.+++++|| .+.+++|+..| |.++.-+-......+ ....-.++|.+++|..
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g-------------- 170 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG-------------- 170 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC--------------
Confidence 88888999999999997 57789999988 888876532221122 2236679999999964
Q ss_pred eEEEEeeCCCeEEcCCCCCCCCccc
Q 006360 192 TALLGGAVGDSILMPDPLPSVTTSS 216 (648)
Q Consensus 192 ~~lvs~s~D~~IkvWDlr~~~~~ss 216 (648)
.++++++ |--|+|||+....-...
T Consensus 171 ~lIAWan-d~Gv~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 171 NLIAWAN-DDGVKVYDTPTRQRLTN 194 (846)
T ss_pred cEEEEec-CCCcEEEeccccceeec
Confidence 3444444 77789998865444333
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0011 Score=75.73 Aligned_cols=140 Identities=21% Similarity=0.285 Sum_probs=103.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC----CCeEEEEEeCCCeEEEEECC--CCCceeEEec
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN----SRHLLVTAGDDGTLHLWDTT--GRSPKVSWLK 78 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd----g~~lLaSgs~Dg~V~IWDl~--t~~~~v~~l~ 78 (648)
+|.++++|+.||+|.|..+.+.+....+. -...+.+|+++|+ ....+++|+..| +.++.-. +.+..+ .+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~ 157 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS 157 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence 68999999999999999998888777665 3467888999998 122689999888 8887652 222112 456
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-------CCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-------EAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h-------~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
...+.|.+++|. |++||-++.+| |++||+..++.+..+.. ...-..+.|.++ ..|+.|=. .+|+|..+
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~-d~v~i~~I 232 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWG-DSVKICSI 232 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecC-CeEEEEEE
Confidence 677899999996 89999999888 89999999887766631 112345778765 34555544 46999888
Q ss_pred CC
Q 006360 152 RG 153 (648)
Q Consensus 152 ~s 153 (648)
+.
T Consensus 233 ~~ 234 (846)
T KOG2066|consen 233 KK 234 (846)
T ss_pred ec
Confidence 83
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.78 E-value=0.00063 Score=75.79 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=88.4
Q ss_pred eEEEEECCCCCceeEEeccCCCCeEEEEEcc-CCCEEEEEe----CCC----eEEEEeCCCCce----eeEeeCCCCeEE
Q 006360 61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG----LDK----KLYTYDPGSRRP----SSCITYEAPFSS 127 (648)
Q Consensus 61 ~V~IWDl~t~~~~v~~l~~H~~~V~slafsP-dg~~LaSgs----~Dg----~I~IWDl~tgk~----v~~~~h~~~I~s 127 (648)
++.+|.+...+..+......+....++.|+- +...|.+.. .+| .-++|++..++. +..+.....|.|
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 3444444444322323333344557788887 666666543 334 345677765543 233468899999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCC
Q 006360 128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (648)
Q Consensus 128 lafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWD 207 (648)
++++|+...++.|+.||.|.+||...... ... .+.-..+.++|+|+|-++++ ++..|.+.+||
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~--ka~~~P~~iaWHp~gai~~V------------~s~qGelQ~FD 327 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGVT---LLA--KAEFIPTLIAWHPDGAIFVV------------GSEQGELQCFD 327 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCee---eee--eecccceEEEEcCCCcEEEE------------EcCCceEEEEE
Confidence 99999999999999999999999987622 122 23456788999996555544 45579999999
Q ss_pred CCC
Q 006360 208 PLP 210 (648)
Q Consensus 208 lr~ 210 (648)
+-.
T Consensus 328 ~AL 330 (545)
T PF11768_consen 328 MAL 330 (545)
T ss_pred eec
Confidence 854
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.77 E-value=0.0017 Score=70.52 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=90.1
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEEeCCCC--C--------cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006360 7 EHLASISLSGDLILHNLASGAKAAELKDPNE--Q--------VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~--~--------~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~ 76 (648)
..++.+..+|.|+.+|..+|+.+........ . ......+ .+. .++.++.+|.++.||..+++.. +
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~tG~~~--W 265 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLRSGRVL--W 265 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECCCCcEE--E
Confidence 4567788889999999999987765432110 0 0001111 233 5777788999999999888632 2
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCC-eEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~-I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
...... ..... .++..|+.++.||.|+.+|..+++.+... ..... ...... .+..|++++.+|.|+++|..++
T Consensus 266 ~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 266 KRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred eeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 222211 11222 25678888899999999999999876544 21221 222222 3668999999999999999887
Q ss_pred C
Q 006360 155 P 155 (648)
Q Consensus 155 ~ 155 (648)
+
T Consensus 341 ~ 341 (377)
T TIGR03300 341 S 341 (377)
T ss_pred C
Confidence 4
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.0005 Score=78.12 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=113.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccC-----------CCeEEEEEeCCCeEEEEECCCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----------SRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspd-----------g~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
|++.| +||.|+. ..|.+-|..+-+.+..+.. |...|+.|.|.|- ..-+|+++...|.|.+||+...
T Consensus 23 w~~~G-LiAygsh-slV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 23 WSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred cCccc-eEEEecC-ceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 55544 6777765 5789999989999988885 6788899999763 2336778888899999999877
Q ss_pred CceeEEeccCCCCeEEEEEcc---CC-CEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeEEEEEeC-CCCEEEEEEcCC
Q 006360 71 SPKVSWLKQHSAPTAGISFSS---DD-KIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSSLAFID-DDWILTAGTSNG 144 (648)
Q Consensus 71 ~~~v~~l~~H~~~V~slafsP---dg-~~LaSgs~Dg~I~IWDl~tgk~v~~~~h-~~~I~slafsP-dG~~Lasgs~DG 144 (648)
.. +.++..|.+.|.+++|-+ +. ..++.-....+|.+|+..+|+.+-.... .....|+.++| |...+..-+..|
T Consensus 100 s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 100 SV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred hh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 64 567888999999999976 33 4667777788999999999987766543 44566789998 667777777778
Q ss_pred eEEEEECC
Q 006360 145 RVVFYDIR 152 (648)
Q Consensus 145 ~V~IWDl~ 152 (648)
.|.+.+.-
T Consensus 179 ~vl~~~~l 186 (1062)
T KOG1912|consen 179 FVLSCKDL 186 (1062)
T ss_pred eEEEEecc
Confidence 88877664
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.75 E-value=0.00019 Score=82.70 Aligned_cols=143 Identities=14% Similarity=0.141 Sum_probs=108.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCCCCcee
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKV 74 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~---------Dg~V~IWDl~t~~~~v 74 (648)
.+++++.+|...|+|.+-|.++.+.++++.. |.+.|.+ |.-.|+ +|++|+. |..|+|||++.-+. +
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSD--fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmra-l 259 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISD--FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRA-L 259 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeec-cccceee--eeccCC-eEEEeecccccccccccchhhhhhhhhhhc-c
Confidence 3678899999999999999999999999997 6777765 455576 7888775 55689999987653 2
Q ss_pred EEeccCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeC---CCCc-ee-eEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEE
Q 006360 75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP---GSRR-PS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (648)
Q Consensus 75 ~~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl---~tgk-~v-~~~~h~~~I~slafsPdG~~Lasgs~DG~V~I 148 (648)
.-+.-+.+ ..-+.|+| -...+++++..|...+.|. .... -+ ........|..++++++|+.++.|..+|.|.+
T Consensus 260 ~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 260 SPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred CCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 22233333 35578888 6678888999999999994 3321 12 22245566999999999999999999999999
Q ss_pred EECC
Q 006360 149 YDIR 152 (648)
Q Consensus 149 WDl~ 152 (648)
|.-+
T Consensus 339 wa~~ 342 (1118)
T KOG1275|consen 339 WADR 342 (1118)
T ss_pred ecCC
Confidence 9843
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.73 E-value=0.002 Score=64.75 Aligned_cols=137 Identities=19% Similarity=0.102 Sum_probs=89.0
Q ss_pred CCCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccC
Q 006360 14 LSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (648)
Q Consensus 14 ~DG~V~IwDl~sg~~i~~l~~~~-~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPd 92 (648)
.+|+|..||..+|+.+....... .....+..+. ++. .+++++.++.|+.||..+++.... ... ...+...- ..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~l~~~d~~tG~~~W~-~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGG-RVYVASGDGNLYALDAKTGKVLWR-FDL-PGPISGAP-VVD 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETT-EEEEEETTSEEEEEETTTSEEEEE-EEC-SSCGGSGE-EEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCC-EEEEEcCCCEEEEEECCCCCEEEE-eec-ccccccee-eec
Confidence 36899999999999998886421 1222211222 344 566678999999999988874322 222 22222211 224
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEe-eCC----CCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 93 DKIIASVGLDKKLYTYDPGSRRPSSCI-TYE----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 93 g~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~----~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
+..++++..|+.|+.+|..+|+.+... ... .....+....++..++++..++.|+.+|+++++
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 667777778889999999999988763 211 112223333347889999989999999999884
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0013 Score=70.90 Aligned_cols=201 Identities=9% Similarity=0.074 Sum_probs=131.2
Q ss_pred ccCCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCC-ceeEE
Q 006360 2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRS-PKVSW 76 (648)
Q Consensus 2 FSpdG~~Lasgs~-DG~V~IwDl~sg~~i~~l~~~~-~~~V~~Vafspdg~--~lLaSgs~Dg~V~IWDl~t~~-~~v~~ 76 (648)
-+.+|.++.+.+. |..++++|+++-..+.-++... .+.+. +..++... .+.++.-.++.|.|+|-.... .....
T Consensus 61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f 139 (558)
T KOG0882|consen 61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF 139 (558)
T ss_pred ccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee
Confidence 3567778888777 9999999998766554443211 12221 11222211 133444578999999986654 33445
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC------CceeeEe----------eCCCCeEEEEEeCCCCEEEEE
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------RRPSSCI----------TYEAPFSSLAFIDDDWILTAG 140 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t------gk~v~~~----------~h~~~I~slafsPdG~~Lasg 140 (648)
-.-|..+|.++.+++.+..+++....|.|..|.... .+....+ ..+....++.|+|+|..+.+-
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 567999999999999999999999999999999873 1111111 245668899999999999999
Q ss_pred EcCCeEEEEECCCCCCceEEEeec------------------------------CC-CCCeeEEEEccCCCeEEEeccCC
Q 006360 141 TSNGRVVFYDIRGKPQPLTVLRAC------------------------------SS-SEAVSSLCWQRAKPVFIDETTCK 189 (648)
Q Consensus 141 s~DG~V~IWDl~s~~~~~~~l~~~------------------------------~h-~~~VtsLafspdg~~Las~~~~~ 189 (648)
..|..|++++.++++ .++.+... .| .-.-+.++|+..|++|+.+..
T Consensus 220 ~~DrkVR~F~~KtGk-lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~-- 296 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGK-LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI-- 296 (558)
T ss_pred CcccEEEEEEeccch-hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc--
Confidence 999999999998763 11111100 11 123456788888888887633
Q ss_pred CCeEEEEeeCCCeEEcC
Q 006360 190 AETALLGGAVGDSILMP 206 (648)
Q Consensus 190 ~~~~lvs~s~D~~IkvW 206 (648)
-+.-++.-.....++++
T Consensus 297 ~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 297 LGIKVINLDTNTVVRIL 313 (558)
T ss_pred eeEEEEEeecCeEEEEe
Confidence 33344444444445544
No 321
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.0031 Score=67.24 Aligned_cols=178 Identities=12% Similarity=0.155 Sum_probs=109.3
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEE---ccC---CCeEEEEEeC----------CCeEEEEECCCC-----Ccee
Q 006360 16 GDLILHNLASGAKAAELKDPNEQVLRVLDY---SRN---SRHLLVTAGD----------DGTLHLWDTTGR-----SPKV 74 (648)
Q Consensus 16 G~V~IwDl~sg~~i~~l~~~~~~~V~~Vaf---spd---g~~lLaSgs~----------Dg~V~IWDl~t~-----~~~v 74 (648)
..|++.|..+.+.+..+.-...+.+.+++. ..+ ...+|+.|.. .|.|.+|++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999988888887776555666665553 222 1446776642 288999999773 2222
Q ss_pred EEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeEeeC--CCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 75 ~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-~v~~~~h--~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
.......++|++++-- ++. |+.+. .+.|++|++...+ ....-.+ ...+.++... +++|++|.....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2334557889998876 444 44333 4689999998877 4444333 3355555554 669999998888888865
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 152 ~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
+.....+..+........++++.|-.++ ..++.+..++.+.++...+
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~------------~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDE------------DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SS------------SEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCC------------cEEEEEcCCCeEEEEEECC
Confidence 5433333444433345557777776532 2555566678877776543
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.57 E-value=0.0059 Score=62.89 Aligned_cols=181 Identities=12% Similarity=0.139 Sum_probs=101.7
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--cee---
Q 006360 1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKV--- 74 (648)
Q Consensus 1 AFSpdG~-~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v--- 74 (648)
+|+|+.+ ++++....+.|..++. +|+.++.+......-.-.|++..++. ++++--.++.+.++++.... ...
T Consensus 28 Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 28 TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEE
T ss_pred EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhc
Confidence 4888766 5566677788988896 68888887653345567788887765 55555568999999983321 111
Q ss_pred EEe-----ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC---CceeeEe---------eCCCCeEEEEEeCC-CCE
Q 006360 75 SWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI---------TYEAPFSSLAFIDD-DWI 136 (648)
Q Consensus 75 ~~l-----~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t---gk~v~~~---------~h~~~I~slafsPd-G~~ 136 (648)
..+ ..+...+-.++|.+.++.|+.+-+..-..||.+.. ...+... .....+..++++|. |.+
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence 111 12445689999999877777777766566665543 2222111 13345789999995 567
Q ss_pred EEEEEcCCeEEEEECCCCCCceEEEeecC--C-----CCCeeEEEEccCCCeEEEe
Q 006360 137 LTAGTSNGRVVFYDIRGKPQPLTVLRACS--S-----SEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 137 Lasgs~DG~V~IWDl~s~~~~~~~l~~~~--h-----~~~VtsLafspdg~~Las~ 185 (648)
++....+..|.++|.... ++..+.... | -...-.|+|.++|+..++.
T Consensus 186 liLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 186 LILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 777778888999995543 333333222 1 1346789999988765554
No 323
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.019 Score=62.92 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=120.9
Q ss_pred ccCCCCEE-EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEec
Q 006360 2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 2 FSpdG~~L-asgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs--~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+++++..+ +....++.|.+.|..+.+......... .-..++|+++++++.++-. .++++.+.|..+...... ..
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~ 157 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP 157 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee
Confidence 46677644 444456889999987777776665322 4456899999986666655 368898888888775333 33
Q ss_pred cCCCCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCceee-----EeeCCCCeEEEEEeCCCCEEEEEEcC---CeEEEE
Q 006360 79 QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs-~Dg~I~IWDl~tgk~v~-----~~~h~~~I~slafsPdG~~Lasgs~D---G~V~IW 149 (648)
....+ ..+++.|++..++.+. .++.|.+.|........ ..........+.++++|+++.+.... +.|.+.
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 33334 8899999999766665 78899999977766553 12334445678999999977765544 589999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 006360 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~ 186 (648)
|..+..- .......+.. ....+.++|+|+++....
T Consensus 237 d~~~~~v-~~~~~~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 237 DTATGNV-TATDLPVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred eCCCceE-EEeccccccC-CCCceeECCCCCEEEEEe
Confidence 9887631 1110111122 466789999988877663
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.55 E-value=0.0023 Score=75.24 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=93.7
Q ss_pred ECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCC------CeEEEEEeCCCeEEEEECCCCCceeEEe----ccCCC
Q 006360 13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS------RHLLVTAGDDGTLHLWDTTGRSPKVSWL----KQHSA 82 (648)
Q Consensus 13 s~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg------~~lLaSgs~Dg~V~IWDl~t~~~~v~~l----~~H~~ 82 (648)
.....|+-.|++.|+.+.++..+....|. .|.|+. ..-.+.|-.++.++.||.+-...++..- .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 34578999999999999999875544454 444431 1135667788999999997543222211 12345
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
...|++-..+| +||+|+.+|.||+||--..+....+ +...+|..|..+.||+||++.+. ..|.|++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 56777776555 7899999999999994332333334 46889999999999999987765 45777765
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.53 E-value=0.0011 Score=73.99 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=90.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE-CCCCCceeEEeccC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD-TTGRSPKVSWLKQH 80 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWD-l~t~~~~v~~l~~H 80 (648)
+||+|++++++ .||...||.......... + ....++|...++ +|+-...+.|.|+. ++.... ..+...
T Consensus 40 ~npngr~v~V~-g~geY~iyt~~~~r~k~~--G----~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~~--k~i~~~ 108 (443)
T PF04053_consen 40 HNPNGRFVLVC-GDGEYEIYTALAWRNKAF--G----SGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEVV--KSIKLP 108 (443)
T ss_dssp E-TTSSEEEEE-ETTEEEEEETTTTEEEEE--E----E-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-TT-------S
T ss_pred ECCCCCEEEEE-cCCEEEEEEccCCccccc--C----ceeEEEEecCcc--EEEEECCCeEEEEEcCccccc--eEEcCC
Confidence 78999999884 578888888433333221 1 223467888554 77777789999963 432221 112111
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC------
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK------ 154 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~------ 154 (648)
..+..|-. |.+|+..+.+ .|.+||+.+++.+..+.... |..+.|+++|.+++..+.+ .++|++.+..
T Consensus 109 -~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~ 181 (443)
T PF04053_consen 109 -FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIP 181 (443)
T ss_dssp -S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBT
T ss_pred -cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhccccc
Confidence 12343322 7777777655 89999999999999887554 8999999999999999866 5777765432
Q ss_pred ----CCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006360 155 ----PQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 155 ----~~~~~~l~~~~h~~~VtsLafspdg~~Las 184 (648)
...+..+. .....|.+.+|..+ -++.+
T Consensus 182 ~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYt 212 (443)
T PF04053_consen 182 EEGVEDAFELIH--EISERIKSGCWVED-CFIYT 212 (443)
T ss_dssp TTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE
T ss_pred ccCchhceEEEE--EecceeEEEEEEcC-EEEEE
Confidence 11234443 22578999999876 33333
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00038 Score=74.02 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=87.5
Q ss_pred EEEEECCCCCceeEEeccCCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCC-CCEEEE
Q 006360 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTA 139 (648)
Q Consensus 62 V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~-~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPd-G~~Las 139 (648)
|++.+-.+-+. ...+..|...|.+++|+|..+ ++..++.+.+|+|.|+++..++..+.....+++++|+-| .++|++
T Consensus 175 v~~l~~~~fks-sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKS-SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcch-hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 44444433332 345667888899999999544 889999999999999999988887776699999999875 567889
Q ss_pred EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 140 gs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
|..+|.|+|||++....++..+...-...+|..|+.-+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 99999999999998766655555433456666666544
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.51 E-value=0.005 Score=70.27 Aligned_cols=193 Identities=11% Similarity=-0.040 Sum_probs=113.6
Q ss_pred CCCCEEEEEEC-CCcEEEEECCCCceeEEEeCCCCCcEEEEEEc-------------------cCCCeEEEEEeCCCeEE
Q 006360 4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYS-------------------RNSRHLLVTAGDDGTLH 63 (648)
Q Consensus 4 pdG~~Lasgs~-DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafs-------------------pdg~~lLaSgs~Dg~V~ 63 (648)
.||++|+.-.. ...|...++...++-..+...+...++.++|- +||+.+..+.-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 47888887654 55677777776665554443344444444443 34432222233344566
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEe----------------------------------------CCC
Q 006360 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----------------------------------------LDK 103 (648)
Q Consensus 64 IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs----------------------------------------~Dg 103 (648)
+.|..+.+...+...+ .....++++++++++++.+ .++
T Consensus 219 vID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn 296 (635)
T PRK02888 219 AVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS 296 (635)
T ss_pred EEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence 6666654422221111 1335567777777777664 234
Q ss_pred eEEEEeCCC-----CceeeEeeCCCCeEEEEEeCCCCEEEEEEc-CCeEEEEECCCCCCce-------E-EEeecCCCCC
Q 006360 104 KLYTYDPGS-----RRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPL-------T-VLRACSSSEA 169 (648)
Q Consensus 104 ~I~IWDl~t-----gk~v~~~~h~~~I~slafsPdG~~Lasgs~-DG~V~IWDl~s~~~~~-------~-~l~~~~h~~~ 169 (648)
.|.++|.++ .+.+..+........+.++|||+++++.+. +.+|.|+|+.+.+..+ . +.....-...
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 588888887 456677777888889999999999887664 8899999998754211 1 1111111222
Q ss_pred eeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 170 VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
-...+|+++|. .+.+--.|..|..|++..
T Consensus 377 PLHTaFDg~G~------------aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGRGN------------AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCCCC------------EEEeEeecceeEEEehHH
Confidence 23345655443 444445588899998764
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0024 Score=70.87 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=100.9
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCCce-eEEeccCCCCeEEEEEccC
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSSD 92 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D---g~V~IWDl~t~~~~-v~~l~~H~~~V~slafsPd 92 (648)
.+.+-|.. +.....+.. ....+..-+|++++..+.+..-.. ..++++|+.++... +.. ....-....|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~-~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTD-SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecc-cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCCCC
Confidence 45555543 554444443 344555578999998655443222 35999999777632 222 3333445789999
Q ss_pred CCEEEEEe-CCC--eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc-CCe--EEEEECCCCCCceEEEeecCC
Q 006360 93 DKIIASVG-LDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGR--VVFYDIRGKPQPLTVLRACSS 166 (648)
Q Consensus 93 g~~LaSgs-~Dg--~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~-DG~--V~IWDl~s~~~~~~~l~~~~h 166 (648)
|+.|+.+. .|+ .|+++|+..+...+.....+.-..-.|+|||++|+..+. .|. |.++|+..... ..+.. .
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~--~ 324 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF--S 324 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec--c
Confidence 98876554 445 688889988775553333444446789999999887664 443 77778777633 33332 2
Q ss_pred CCCeeEEEEccCCCeEEEec
Q 006360 167 SEAVSSLCWQRAKPVFIDET 186 (648)
Q Consensus 167 ~~~VtsLafspdg~~Las~~ 186 (648)
.+.-..-.|+|||++++..+
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCCcCccCCCCCCEEEEEe
Confidence 22223788999999988874
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.00092 Score=75.60 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=90.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-----
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS----- 75 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~-~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~----- 75 (648)
++-.+++++.|+.-|.|++|+-..++. ..++. .....+..+..+++.. ++|.|+..|.|.++-+....+.-.
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeecc
Confidence 455688999999999999999655543 33332 2233444456777665 889999999999998865432211
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC-----ceeeEeeCCCCeEEEEEe
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----RPSSCITYEAPFSSLAFI 131 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tg-----k~v~~~~h~~~I~slafs 131 (648)
.-+.|+..|+|++|++++..+++|...|+|.+-.+... +...++...+.|..+.+.
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 12347889999999999999999999999999888762 112223456667666654
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00075 Score=72.68 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=122.0
Q ss_pred CCEEEEEECCCcEEEEECCCCce----eEEEeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCce-eEEecc
Q 006360 6 DEHLASISLSGDLILHNLASGAK----AAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPK-VSWLKQ 79 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~----i~~l~~~~~~~V~~Vafspdg~~lLaSgs~-Dg~V~IWDl~t~~~~-v~~l~~ 79 (648)
.+++++++.||+++.|.- +... +..+. .|...|..++.+-++. ++++.+. |+.++++|+..-... ...+..
T Consensus 20 a~fiiqASlDGh~KFWkK-s~isGvEfVKhFr-aHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKK-SRISGVEFVKHFR-AHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hheEEeeecchhhhhcCC-CCccceeehhhhH-HHHHHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhccccc
Confidence 467889999999999984 3312 22222 2566777788888886 8888777 999999999765421 111122
Q ss_pred CCCCeEEEEEcc-CC--CEEEEEeCCCeEEEEeCCCCcee-eEe--eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 80 HSAPTAGISFSS-DD--KIIASVGLDKKLYTYDPGSRRPS-SCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 80 H~~~V~slafsP-dg--~~LaSgs~Dg~I~IWDl~tgk~v-~~~--~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
-.+.+.+ ..++ |. .+-++.-.++.+.++|-....+. ..+ -|..+|.++.+++-+..+++....|.|.-|....
T Consensus 97 lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 97 LPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 2222221 1222 11 22333455789999998765433 222 3899999999999999999999999999999874
Q ss_pred -CCCceE-----------EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 154 -KPQPLT-----------VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 154 -~~~~~~-----------~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
...+.. .+..........++.|+|+|..+.+-+ .|..|++++.+
T Consensus 176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~------------~DrkVR~F~~K 231 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN------------PDRKVRGFVFK 231 (558)
T ss_pred cccCccccccccccccchhhcccccccCccceEEccccCcccccC------------cccEEEEEEec
Confidence 111111 111113456788999999988877762 36666666554
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.28 E-value=0.064 Score=59.49 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006360 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 123 ~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las 184 (648)
+++..+++||+|++||.-..+|.+.|++.+-.+ .+..+.. ........+.|.-+.-.++.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~-~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE-KLCEFDT-DSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccc-eeEEeec-CcCCCCcEEEEECCCcEEEE
Confidence 579999999999999999999999998876542 2233332 23456778888876544443
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0021 Score=72.83 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=89.7
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 006360 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 36 ~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~ 115 (648)
+...|.--++...++ +++.|+.-|.|++|+-.++........+....+..++.+++..++|.|+..|.|.++-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 344444445666676 7999999999999998877643333333455566777888999999999999999998876542
Q ss_pred ee--Ee-----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 116 SS--CI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 116 v~--~~-----~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
-. .+ .|...|+|++|++|+..|++|...|+|.+-.+..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 11 2678899999999999999999999999988876
No 333
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.15 E-value=0.18 Score=55.59 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=89.5
Q ss_pred ccCCCCEEEEE-ECCC----cEEEEECCCCceeEEE-eCCCCCcEEEEEEccCCCeEEEEEeCC----------CeEEEE
Q 006360 2 YNCKDEHLASI-SLSG----DLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDD----------GTLHLW 65 (648)
Q Consensus 2 FSpdG~~Lasg-s~DG----~V~IwDl~sg~~i~~l-~~~~~~~V~~Vafspdg~~lLaSgs~D----------g~V~IW 65 (648)
++|||++||.+ +..| .|+++|+.+|+.+... .. .....+.|.++++.++++...+ ..|++|
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 68999998865 4444 4999999999876533 22 1112389999998677775433 348888
Q ss_pred ECCCCCce-eEEeccCCCC--eEEEEEccCCCEEEEEeCC----CeEEEEeCCCC-----ceeeEeeCCCCeE-EEEEeC
Q 006360 66 DTTGRSPK-VSWLKQHSAP--TAGISFSSDDKIIASVGLD----KKLYTYDPGSR-----RPSSCITYEAPFS-SLAFID 132 (648)
Q Consensus 66 Dl~t~~~~-v~~l~~H~~~--V~slafsPdg~~LaSgs~D----g~I~IWDl~tg-----k~v~~~~h~~~I~-slafsP 132 (648)
++.+.... ...+...... ...+.++.|+++|+..... ..|++.|+..+ ....+......+. .+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 88766432 2333333332 5678889999988764443 35888898875 3334444444443 34333
Q ss_pred CCCEEEEEE---cCCeEEEEECCCCC
Q 006360 133 DDWILTAGT---SNGRVVFYDIRGKP 155 (648)
Q Consensus 133 dG~~Lasgs---~DG~V~IWDl~s~~ 155 (648)
.+.+++... .++.|...++....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CCEEEEeeCCCCCCcEEEEecccccc
Confidence 333333332 24668888888764
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.12 E-value=0.022 Score=62.45 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=89.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
+..|+.++.+|.|+.+|.++|+.+.+.... ........+. + . .++.+..++.|+.+|..+++.... .. ......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~-~~-~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWT-VN-LDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeee-ec-CCCCcc
Confidence 556777888999999999999998877642 2211111121 3 3 466677889999999998874322 21 111100
Q ss_pred EE--EEcc--CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCC--------eEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 006360 86 GI--SFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--------FSSLAFID--DDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 86 sl--afsP--dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~--------I~slafsP--dG~~Lasgs~DG~V~IWDl 151 (648)
.+ .-+| .+..++.+..++.+..+|..+|+.+-......+ ...+..+| .+..|++++.+|.++.+|+
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 00 0122 234577788899999999999886544321111 11111122 3557777888999999999
Q ss_pred CCCC
Q 006360 152 RGKP 155 (648)
Q Consensus 152 ~s~~ 155 (648)
.+++
T Consensus 274 ~tG~ 277 (394)
T PRK11138 274 RSGQ 277 (394)
T ss_pred CCCC
Confidence 9874
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.10 E-value=0.022 Score=62.54 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=87.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
+..|+.++.+|.++.+|..+|+.+.+..... . ..+.. .+. .|+.++.++.|+.+|..+++.....-........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~-~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--V-NDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--c-cCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence 4567777889999999999998876654211 1 11222 244 5677788999999999888632211110011112
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC-CCCeEE-EEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSS-LAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h-~~~I~s-lafsPdG~~Lasgs~DG~V~IWDl 151 (648)
...+ .+.+|+.++.||.|+++|..+|+.+..... ...+.. ..+ .+..|++++.||.|+.+++
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2222 366788899999999999999998766542 222321 222 2457889999999988764
No 336
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=97.09 E-value=0.0013 Score=58.74 Aligned_cols=46 Identities=30% Similarity=0.392 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 603 IEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 603 ~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
.+.|.+|..+-.+|..-|.++...+.+|+|||.+||-||+.||..|
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777888888899999999999999999999999874
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0028 Score=72.73 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=84.1
Q ss_pred CccCCCCEEEEEEC----CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 006360 1 MYNCKDEHLASISL----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (648)
Q Consensus 1 AFSpdG~~Lasgs~----DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~ 76 (648)
.|+|...++++++. .|.|.||- .+|++-+.+.- .-.+.++||+|..- +|+.|-.-|.+.+|...+.+. ...
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~-htv 96 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTET-HTV 96 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCcee-eee
Confidence 48899999887753 57899885 57775544432 12245699999865 788888889999999987763 456
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~ 111 (648)
...|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 67899999999999999999999999999999765
No 338
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.00052 Score=78.79 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=103.1
Q ss_pred EEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCC--eEEE
Q 006360 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--KLYT 107 (648)
Q Consensus 30 ~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg--~I~I 107 (648)
..+.. +....+|++|+-..+ .|+.|...|.|++|++.++.. .....+|...|+.+.-+-||..+++.+.-. -..+
T Consensus 1095 ~~frd-~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRD-ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhc-cccceeeEEeecCCc-eEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34444 456788999998877 789999999999999988874 456789999999999888988877665443 4679
Q ss_pred EeCCC-CceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeE
Q 006360 108 YDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVF 182 (648)
Q Consensus 108 WDl~t-gk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~-~h~~~VtsLafspdg~~L 182 (648)
|++.. +.....+ ....++.|+..-..-+.|+....+.|||+.+...+...+... +....-.++.|+|+...+
T Consensus 1172 W~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99865 3333333 345678888765555667766779999999875444333321 222333667888864444
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.07 E-value=0.037 Score=56.44 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=70.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~ 85 (648)
|++++.|...|.+++.++++|..+..+.....-.++ ....+++. +|+.++.|++.+..|.++..+. ...+.......
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~g-lIycgshd~~~yalD~~~~~cV-ykskcgG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGG-LIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCc-eEEEecCCCcEEEecccccceE-EecccCCceec
Confidence 677889999999999999999888877753333333 23456777 8999999999999999888763 33444434344
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGSR 113 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~tg 113 (648)
+-+..|-...|+.+...|.|.-......
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCCC
Confidence 4556663334444555555554444443
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.003 Score=70.79 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=75.5
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE-EEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q 006360 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~-slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v 116 (648)
..+.-+.|+|.-. +||.+..+|.|.++.+. .+ ++..+.-|...++ ++||.|||+.|+.|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3456689999888 99999999999998887 33 3556665666666 9999999999999999999999999998877
Q ss_pred eE--eeCCCCeEEEEEeC
Q 006360 117 SC--ITYEAPFSSLAFID 132 (648)
Q Consensus 117 ~~--~~h~~~I~slafsP 132 (648)
.. +.....|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 66 45677888888863
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.99 E-value=0.015 Score=68.69 Aligned_cols=140 Identities=18% Similarity=0.236 Sum_probs=93.4
Q ss_pred CeEEEEE-eCCCeEEEEECCCCCceeEEeccCCCC-eEEEEEc----c-CCCEEEEEeCCCeEEEEeCCCCc--eeeE--
Q 006360 50 RHLLVTA-GDDGTLHLWDTTGRSPKVSWLKQHSAP-TAGISFS----S-DDKIIASVGLDKKLYTYDPGSRR--PSSC-- 118 (648)
Q Consensus 50 ~~lLaSg-s~Dg~V~IWDl~t~~~~v~~l~~H~~~-V~slafs----P-dg~~LaSgs~Dg~I~IWDl~tgk--~v~~-- 118 (648)
+++|+.- .....|+-.|+..++. +..+..|... |..++-. . .....+.|-.+..|..||.|-.. ++..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3354443 4567899999999885 5666666543 5544321 1 23456778888899999998642 3321
Q ss_pred --eeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 006360 119 --ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (648)
Q Consensus 119 --~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs 196 (648)
+.......|++-..+| +||+|+.+|.|++||--+ ......+. +...+|..|+.+.||+||++. |....+|+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp--~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALP--GLGDPIIGIDVTADGKWILAT--CKTYLLLID 645 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCC--CCCCCeeEEEecCCCcEEEEe--ecceEEEEE
Confidence 1245567888877766 799999999999999543 23223333 667999999999999997665 334444443
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.084 Score=57.92 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=108.7
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-
Q 006360 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW- 76 (648)
Q Consensus 1 AFSpdG~~Lasgs~---DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~- 76 (648)
+|+++++.+..+.. ++.+.+.|..+++.+....... .. ..+++.|++..++++-..++.|.+.|..+... ...
T Consensus 122 ~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~ 198 (381)
T COG3391 122 AVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGS 198 (381)
T ss_pred EECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-eccc
Confidence 47888987776655 6889999988888888755322 23 66899999996666666889999999766542 110
Q ss_pred ---eccCCCCeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCceeeE-eeCCC-CeEEEEEeCCCCEEEEEEcC-CeEE
Q 006360 77 ---LKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSC-ITYEA-PFSSLAFIDDDWILTAGTSN-GRVV 147 (648)
Q Consensus 77 ---l~~H~~~V~slafsPdg~~LaSgs~D---g~I~IWDl~tgk~v~~-~~h~~-~I~slafsPdG~~Lasgs~D-G~V~ 147 (648)
...-......+.+.+++.+++..... +.+...|..++..... ..... ....+.++|+|.++.+.... +.|.
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 11222335678999999976665544 5899999998887665 22222 56778999999999888554 7899
Q ss_pred EEECCCC
Q 006360 148 FYDIRGK 154 (648)
Q Consensus 148 IWDl~s~ 154 (648)
+.|..+.
T Consensus 279 vid~~~~ 285 (381)
T COG3391 279 VIDGATD 285 (381)
T ss_pred EEeCCCC
Confidence 9998876
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.97 E-value=0.033 Score=64.48 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=91.7
Q ss_pred CccCCCCEEEEEE------CCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------------C
Q 006360 1 MYNCKDEHLASIS------LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------------G 60 (648)
Q Consensus 1 AFSpdG~~Lasgs------~DG--~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D------------g 60 (648)
+++|||+.++... .|+ .|.+++. .+.. ..+.. ......-.|+|+|+ .|++..+. +
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~--g~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE--GHSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec--CCCCCCceECCCCC-ceEEEecCcceEEEeccCCCc
Confidence 4689999887665 243 4555564 3333 33332 12356678999987 34444322 3
Q ss_pred eEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEE---EeCCCCceeeE-----e--eCCCCeEEEEE
Q 006360 61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT---YDPGSRRPSSC-----I--TYEAPFSSLAF 130 (648)
Q Consensus 61 ~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~I---WDl~tgk~v~~-----~--~h~~~I~slaf 130 (648)
.+++.+++.+... . .....|..+.|+|||..|+... ++.|++ -....|. ..+ + .....+..+.|
T Consensus 431 ql~~~~vd~ge~~--~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 431 QLARTPVDASAVA--S--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred eEEEEeccCchhh--h--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceE
Confidence 3444455444321 1 3345799999999999988876 477777 4444454 222 2 13334688999
Q ss_pred eCCCCEEEEEEcCCe--EEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 006360 131 IDDDWILTAGTSNGR--VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 131 sPdG~~Lasgs~DG~--V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp 177 (648)
..++.++ ++..++. |+..++..... ..+........+..|+=.+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccc--cccCCCCccCceEEEecCC
Confidence 9998855 5555444 44445554321 1112112345666666554
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.96 E-value=0.022 Score=68.19 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=71.8
Q ss_pred EEEccCCCeEEEEE----eCC-CeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeC---CCeEEEEeCCC--
Q 006360 43 LDYSRNSRHLLVTA----GDD-GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGS-- 112 (648)
Q Consensus 43 Vafspdg~~lLaSg----s~D-g~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~---Dg~I~IWDl~t-- 112 (648)
|.|--||+ +|++. ..+ ..|+|||-+ +.. -..-......-.+++|-|.|.+|++... |..|.+|.-..
T Consensus 201 IsWRgDg~-~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 201 ISWRGDGE-YFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred EEEccCCc-EEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 78999998 56652 233 789999987 221 1111222334468999999999988643 45788887432
Q ss_pred -CceeeEee-CCCCeEEEEEeCCCCEEEE---EEcCCeEEEEECCCC
Q 006360 113 -RRPSSCIT-YEAPFSSLAFIDDDWILTA---GTSNGRVVFYDIRGK 154 (648)
Q Consensus 113 -gk~v~~~~-h~~~I~slafsPdG~~Las---gs~DG~V~IWDl~s~ 154 (648)
|....-+. ....|..++|+.++.+|++ ......|++|-+.+.
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 22111122 2334999999999999987 444555999999875
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.92 E-value=0.24 Score=51.11 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=90.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE--------
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW-------- 76 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~-------- 76 (648)
.++.|+.|..+| |++|+.........+. +...|..+...++-+ +++.- .|+.+++|++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccccccc
Confidence 578899998888 9999983333323332 223388888888777 34443 3499999998544321100
Q ss_pred -----eccCCCCeEEEE--EccCCCEEEEEeCCCeEEEEeCCCC-----ceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC
Q 006360 77 -----LKQHSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSR-----RPSSCITYEAPFSSLAFIDDDWILTAGTSNG 144 (648)
Q Consensus 77 -----l~~H~~~V~sla--fsPdg~~LaSgs~Dg~I~IWDl~tg-----k~v~~~~h~~~I~slafsPdG~~Lasgs~DG 144 (648)
.......+..++ -...+...+++...+.|.+|..... +..+.+.....+..++|. ++.|+.|..++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc
Confidence 112223344444 1124444455555668888877653 455666788999999998 55788887665
Q ss_pred eEEEEECCCC
Q 006360 145 RVVFYDIRGK 154 (648)
Q Consensus 145 ~V~IWDl~s~ 154 (648)
..++|+.+.
T Consensus 159 -f~~idl~~~ 167 (275)
T PF00780_consen 159 -FYLIDLNTG 167 (275)
T ss_pred -eEEEecCCC
Confidence 788899865
No 346
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.89 E-value=0.0026 Score=56.95 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 604 EILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 604 ~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
+-|-++..+-++|..-|.++...+.+|+|||.+||-||+.||+.|
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777778888899999999999999999999864
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.88 E-value=0.00032 Score=78.34 Aligned_cols=159 Identities=14% Similarity=0.187 Sum_probs=109.3
Q ss_pred CCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcc-CCCEEEEEe----CCCeEEEEe
Q 006360 37 EQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSS-DDKIIASVG----LDKKLYTYD 109 (648)
Q Consensus 37 ~~~V~~Vafspdg~-~lLaSgs~Dg~V~IWDl~t~~~~-v~~l~~H~~~V~slafsP-dg~~LaSgs----~Dg~I~IWD 109 (648)
...+.|++++-+.+ .+++.|..+|.|-+-.++..... .....+|...+++++|++ |.++||.|- .|-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34567788765443 68889999999999888554322 345667888999999999 777887763 345899999
Q ss_pred CCCC--ceeeE--e--eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeE
Q 006360 110 PGSR--RPSSC--I--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVF 182 (648)
Q Consensus 110 l~tg--k~v~~--~--~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafsp-dg~~L 182 (648)
+.++ .+... + .......+++|-.+.+.|.+|.....|.++|++........ ..+..+..+..+| .+.|+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s----vnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS----VNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh----hhhhhcccceecCCCCCce
Confidence 9876 22211 1 23445668899888889999999999999999953211111 2344566677777 44443
Q ss_pred EEeccCCCCeEEEEeeCCCeEEcCC-CCCCC
Q 006360 183 IDETTCKAETALLGGAVGDSILMPD-PLPSV 212 (648)
Q Consensus 183 as~~~~~~~~~lvs~s~D~~IkvWD-lr~~~ 212 (648)
+. ..|+.|-+|| .+...
T Consensus 212 cs-------------~~dg~iAiwD~~rnie 229 (783)
T KOG1008|consen 212 CS-------------NSDGDIAIWDTYRNIE 229 (783)
T ss_pred ec-------------cccCceeeccchhhhc
Confidence 33 3499999999 55443
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0042 Score=69.70 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
|+|.-..||++..+|.|.++.++ .+.+.++..+.....++++|.|||+ +|+.|-.||+|++-|+..+.........-.
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~~~~s~e 105 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVSFLFSVE 105 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceeccccccc
Confidence 78999999999999999999986 8888888865555555999999998 999999999999999988775433334455
Q ss_pred CCeEEEEEc
Q 006360 82 APTAGISFS 90 (648)
Q Consensus 82 ~~V~slafs 90 (648)
..|.++-|.
T Consensus 106 ~~is~~~w~ 114 (665)
T KOG4640|consen 106 TDISKGIWD 114 (665)
T ss_pred cchheeecc
Confidence 678888886
No 349
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.78 E-value=0.078 Score=61.42 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=81.2
Q ss_pred CcEEEEEEccCCCeEEEEEe-----CCC--eEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCC--------
Q 006360 38 QVLRVLDYSRNSRHLLVTAG-----DDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-------- 102 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs-----~Dg--~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~D-------- 102 (648)
..+...+++++++.++++.. .|. .|++++..+.. .....+. ...+-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 35677899999996555542 243 45555653322 2223332 37889999998888777533
Q ss_pred ----CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEE---EECCCCCCceEE-----EeecCCCCCe
Q 006360 103 ----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF---YDIRGKPQPLTV-----LRACSSSEAV 170 (648)
Q Consensus 103 ----g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~I---WDl~s~~~~~~~-----l~~~~h~~~V 170 (648)
+.+++.++..+.... ...+.|..+.|+|||..|+... +|.|+| -....+. ..+ +. ..-...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~-~~l~~~~ 499 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVG-PGLGDTA 499 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEee-cccCCcc
Confidence 233333444333322 3356799999999999988766 477877 3333332 111 11 1233446
Q ss_pred eEEEEccCCCeE
Q 006360 171 SSLCWQRAKPVF 182 (648)
Q Consensus 171 tsLafspdg~~L 182 (648)
.++.|..++.++
T Consensus 500 ~~l~W~~~~~L~ 511 (591)
T PRK13616 500 VSLDWRTGDSLV 511 (591)
T ss_pred ccceEecCCEEE
Confidence 889999876644
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.71 E-value=0.2 Score=53.38 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=95.2
Q ss_pred CCEEEEEEC----------CCcEEEEECCCC-----ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006360 6 DEHLASISL----------SGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 6 G~~Lasgs~----------DG~V~IwDl~sg-----~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
-.+|++|.. .|.|.+|++... +..........+.|++++-- +. .|+.+ .++.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~-~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVA-VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEE-ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEe-ecCEEEEEEccCc
Confidence 356776643 288999999874 22211111235677777655 33 34433 3489999999777
Q ss_pred C-ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC-CceeeEee---CCCCeEEEEEeCCCCEEEEEEcCCe
Q 006360 71 S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGR 145 (648)
Q Consensus 71 ~-~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t-gk~v~~~~---h~~~I~slafsPdG~~Lasgs~DG~ 145 (648)
. ............|.++... +++|+.|...+.|.++..+. .+.+..+. ...+++++.|-.|++.++++..+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 6 3333333333456666655 66999998888777764432 23233332 4556888888866679999999999
Q ss_pred EEEEECCCC------CC-ceEEEeecCCCCCeeEE
Q 006360 146 VVFYDIRGK------PQ-PLTVLRACSSSEAVSSL 173 (648)
Q Consensus 146 V~IWDl~s~------~~-~~~~l~~~~h~~~VtsL 173 (648)
|.++..... .. .+.....+.....|+++
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 999987631 11 23333334455667777
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.088 Score=61.30 Aligned_cols=147 Identities=19% Similarity=0.300 Sum_probs=99.0
Q ss_pred CEEEEEECCC-----cEEEEECCCC------ceeE---EE--eCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--
Q 006360 7 EHLASISLSG-----DLILHNLASG------AKAA---EL--KDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-- 67 (648)
Q Consensus 7 ~~Lasgs~DG-----~V~IwDl~sg------~~i~---~l--~~~-~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl-- 67 (648)
++|++.+.|+ .|+|||++.- .++. .+ +.+ ...++.+++.+.+-. .+|+|-.||.|.++.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc
Confidence 5777766664 4999998642 2331 11 112 356788899998866 8999999999999854
Q ss_pred -CCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce-eeEe-eCCCCeEEEEEeCCCCEEEEEEcCC
Q 006360 68 -TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDDDWILTAGTSNG 144 (648)
Q Consensus 68 -~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~-v~~~-~h~~~I~slafsPdG~~Lasgs~DG 144 (648)
+....+.........+|+.+.+..++..++-+.....|.+|.+....+ ...+ .++..+.|..|++....+++++..
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e- 235 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE- 235 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-
Confidence 222222344445568899999998888744444455789999884332 3334 477889999998765545555443
Q ss_pred eEEEEECCCCC
Q 006360 145 RVVFYDIRGKP 155 (648)
Q Consensus 145 ~V~IWDl~s~~ 155 (648)
.|++||....+
T Consensus 236 ~l~fY~sd~~~ 246 (933)
T KOG2114|consen 236 FLYFYDSDGRG 246 (933)
T ss_pred eEEEEcCCCcc
Confidence 59999998764
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.34 Score=51.65 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=93.5
Q ss_pred EEEEECCCCceeEEEeC----CCCCcEEEEEEccCCCeEEEEEe-----C-----CCeEEEEECCCCCceeEEeccCCCC
Q 006360 18 LILHNLASGAKAAELKD----PNEQVLRVLDYSRNSRHLLVTAG-----D-----DGTLHLWDTTGRSPKVSWLKQHSAP 83 (648)
Q Consensus 18 V~IwDl~sg~~i~~l~~----~~~~~V~~Vafspdg~~lLaSgs-----~-----Dg~V~IWDl~t~~~~v~~l~~H~~~ 83 (648)
+++++++++..+..+.. ......+.+...|+|..++-+.+ . -|.|+.+|.. +. .++.+..|-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEEe
Confidence 66777665555333321 12234567788899983222222 1 1334444442 22 25556666667
Q ss_pred eEEEEEccCCCEEEEEeCC-CeEEEEeCCC--C----ceeeEe--eCCCCeEEEEEeCCCCEEEEEEcCC-eEEEEECCC
Q 006360 84 TAGISFSSDDKIIASVGLD-KKLYTYDPGS--R----RPSSCI--TYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRG 153 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~D-g~I~IWDl~t--g----k~v~~~--~h~~~I~slafsPdG~~Lasgs~DG-~V~IWDl~s 153 (648)
-+.|+|+||++.++.+... +.|+-|++.. + +..... ...+..-.++...+|++.+++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 7899999999887777664 6888887752 2 111111 2356677888888998887666655 89999999
Q ss_pred CCCceEEEeecCCCCCeeEEEEc
Q 006360 154 KPQPLTVLRACSSSEAVSSLCWQ 176 (648)
Q Consensus 154 ~~~~~~~l~~~~h~~~VtsLafs 176 (648)
+ +++..+.. ....+++++|-
T Consensus 244 G-~l~~~i~l--P~~~~t~~~Fg 263 (307)
T COG3386 244 G-KLLGEIKL--PVKRPTNPAFG 263 (307)
T ss_pred C-cEEEEEEC--CCCCCccceEe
Confidence 4 34455552 33778888885
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.62 E-value=0.21 Score=54.02 Aligned_cols=178 Identities=18% Similarity=0.207 Sum_probs=94.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~----------------~~~V~~Vafspdg~~lLaSgs~Dg~V~IW 65 (648)
|+|+|+.|+... ++.|++++..++...+-..... -+.-..+.|+||++++++.--++..|..+
T Consensus 50 ~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 50 WSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp E-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred eecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 899999999884 6789999987764433221110 01124578999999665554444444333
Q ss_pred -----------------------------------ECCCCCce-eEEe---ccCCCCeEEEEEccCCCEEEEEeCCC---
Q 006360 66 -----------------------------------DTTGRSPK-VSWL---KQHSAPTAGISFSSDDKIIASVGLDK--- 103 (648)
Q Consensus 66 -----------------------------------Dl~t~~~~-v~~l---~~H~~~V~slafsPdg~~LaSgs~Dg--- 103 (648)
|+.+++.. +... ..-...+..+.|.+++..|+..-.++
T Consensus 129 ~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~ 208 (353)
T PF00930_consen 129 PLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN 208 (353)
T ss_dssp EEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST
T ss_pred EeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC
Confidence 33333211 1111 11233467899999888444433322
Q ss_pred --eEEEEeCCCCceeeEe--eCCCCe---EEEEEe-CCCC-EEEEEEcCCeEE--EEECCCCCCceEEEeecCCCCCeeE
Q 006360 104 --KLYTYDPGSRRPSSCI--TYEAPF---SSLAFI-DDDW-ILTAGTSNGRVV--FYDIRGKPQPLTVLRACSSSEAVSS 172 (648)
Q Consensus 104 --~I~IWDl~tgk~v~~~--~h~~~I---~slafs-PdG~-~Lasgs~DG~V~--IWDl~s~~~~~~~l~~~~h~~~Vts 172 (648)
.+.++|..++++.... ...++| ....|. +++. +|.....||.-+ +++..+. ..+.+. ...-.|..
T Consensus 209 ~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT--~G~~~V~~ 284 (353)
T PF00930_consen 209 RLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLT--SGDWEVTS 284 (353)
T ss_dssp EEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS---SSS-EEE
T ss_pred EEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccc--cCceeecc
Confidence 6778898887654433 234443 355554 5544 455555777644 4555554 223333 33445644
Q ss_pred -EEEccCCCeEEE
Q 006360 173 -LCWQRAKPVFID 184 (648)
Q Consensus 173 -Lafspdg~~Las 184 (648)
+.|+++++.|..
T Consensus 285 i~~~d~~~~~iyf 297 (353)
T PF00930_consen 285 ILGWDEDNNRIYF 297 (353)
T ss_dssp EEEEECTSSEEEE
T ss_pred cceEcCCCCEEEE
Confidence 667777665443
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.61 E-value=0.19 Score=51.78 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=87.2
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc--
Q 006360 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-- 114 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~-~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-- 114 (648)
..+..+.|+|+.+.++++....+.|..++.++.- +..+. ...+..-.|++.-++.++++--.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3489999999988788888889999999976443 33332 223568899998778777766668999999884321
Q ss_pred --e--eeEe--e----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC--CCCceEEEeec------CCCCCeeEEEEc
Q 006360 115 --P--SSCI--T----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRAC------SSSEAVSSLCWQ 176 (648)
Q Consensus 115 --~--v~~~--~----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s--~~~~~~~l~~~------~h~~~VtsLafs 176 (648)
. +..+ . +...+..++|++.++.|+++-+..-..||.++. ....+...... .....+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 1 1112 1 345689999999988888888777677777764 21222222111 234557889999
Q ss_pred cCCCeEEE
Q 006360 177 RAKPVFID 184 (648)
Q Consensus 177 pdg~~Las 184 (648)
|....+..
T Consensus 180 p~t~~lli 187 (248)
T PF06977_consen 180 PRTGHLLI 187 (248)
T ss_dssp TTTTEEEE
T ss_pred CCCCeEEE
Confidence 86544333
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.58 E-value=0.14 Score=46.07 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=67.6
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCC
Q 006360 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA 123 (648)
Q Consensus 44 afspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~ 123 (648)
.|.-+|.+.|+.|++|..|+||+-..- +..+..+ +.|.+++-... ..|+.+-.+|+|-+|+-.. .+-.+..+.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~---~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~ 81 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEI---VAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKSKN 81 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcE---EEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeeccCC
Confidence 455677788999999999999986532 3334433 45777776644 6799999999999998532 223334455
Q ss_pred CeEEEEEeC---CC-CEEEEEEcCCeEEE
Q 006360 124 PFSSLAFID---DD-WILTAGTSNGRVVF 148 (648)
Q Consensus 124 ~I~slafsP---dG-~~Lasgs~DG~V~I 148 (648)
.+.++++.. || .-|++|-.+|.|-+
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 577777655 22 25888888888753
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.48 E-value=0.0073 Score=40.28 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=32.0
Q ss_pred eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEe
Q 006360 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 74 v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWD 109 (648)
+..+..|...|.+++|++++.++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455667888999999999889999999999999996
No 357
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.079 Score=58.79 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=88.4
Q ss_pred CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCE-------EEEEeCCCeEEEEeCCCCce--eeEe
Q 006360 49 SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI-------IASVGLDKKLYTYDPGSRRP--SSCI 119 (648)
Q Consensus 49 g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~-------LaSgs~Dg~I~IWDl~tgk~--v~~~ 119 (648)
.+.+|.++..-..++-.|+..++. +..++-|.+ |+-+.+.|+.+. -+.|-.|..|+-||.+-... +...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 333444556667788889988874 556666665 787888875432 24566788899999984322 1111
Q ss_pred -----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 120 -----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 120 -----~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
.......|.+-..+| +|++|+.+|.|++||--.. .....+. +...+|..|..+.+|++|++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~-~AKTAlP--gLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR-RAKTALP--GLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh-hhhhccc--ccCCceeeEEeeccCcEEEEe
Confidence 133445666655555 7999999999999998432 2223333 778999999999999997665
No 358
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.42 E-value=1 Score=46.66 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=99.8
Q ss_pred CCCCEEEEEECCC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 4 CKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 4 pdG~~Lasgs~DG--~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
.+|.++-+.+.-| .|+.+|+.+++......-.....--.++... +.++.-.-.++...+||..+-+. +..+ ...
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~-~~~~-~y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK-IGTF-PYP 129 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE-EEEE-E-S
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE-EEEE-ecC
Confidence 4566667777666 6999999999988766644433333444442 23555567889999999988764 3333 223
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---C---CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---h---~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
..=+.++ .|+..|+.......|+++|..+.+....+. . -..++-+.|- +|.+.|=.-....|...|..++
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG- 205 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG- 205 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-
Confidence 3446777 367777777777899999998887666553 2 2235566665 5655554445566777788777
Q ss_pred CceEEEeec-------------CCCCCeeEEEEccCCC
Q 006360 156 QPLTVLRAC-------------SSSEAVSSLCWQRAKP 180 (648)
Q Consensus 156 ~~~~~l~~~-------------~h~~~VtsLafspdg~ 180 (648)
.....+... ........|+|+|...
T Consensus 206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 333333211 1135688999988644
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.36 E-value=0.22 Score=56.56 Aligned_cols=146 Identities=11% Similarity=0.080 Sum_probs=88.0
Q ss_pred CCCEEEEEECCC------------------cEEEEECCCCceeEEEeCCCCCc-----EEEEEEc----cCC--CeEEEE
Q 006360 5 KDEHLASISLSG------------------DLILHNLASGAKAAELKDPNEQV-----LRVLDYS----RNS--RHLLVT 55 (648)
Q Consensus 5 dG~~Lasgs~DG------------------~V~IwDl~sg~~i~~l~~~~~~~-----V~~Vafs----pdg--~~lLaS 55 (648)
.+..++.+..++ .|+-+|.++|+.+..++..+... .....+. -++ ..+++.
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~ 306 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH 306 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence 356677776554 79999999999998876322110 0000111 122 235778
Q ss_pred EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEE------------------eCCCeEEEEeCCCCceee
Q 006360 56 AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV------------------GLDKKLYTYDPGSRRPSS 117 (648)
Q Consensus 56 gs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSg------------------s~Dg~I~IWDl~tgk~v~ 117 (648)
++.+|.++..|..+++..-..-.. ...+...| ..++.+ ..+|.|...|+.+|+.+-
T Consensus 307 g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W 380 (488)
T cd00216 307 APKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW 380 (488)
T ss_pred ECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence 889999999999998843221111 11223333 233332 246789999999998775
Q ss_pred EeeCC---------CCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC
Q 006360 118 CITYE---------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 118 ~~~h~---------~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
..... .+...-...-.+..|++++.||.|+.+|.++++.
T Consensus 381 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 381 EKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred EeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 55422 1111111112467899999999999999999853
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.35 E-value=0.14 Score=46.07 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=65.1
Q ss_pred cCCC-CEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 006360 3 NCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 3 SpdG-~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
.-|| +.|++|+.|..|+||+ ....+.++. ....|.+++-...+ .|+.+-.+|+|-+|+-..... ..+ .+
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~RlW---RiK-SK 80 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQRLW---RIK-SK 80 (111)
T ss_pred CCCCcceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCCC--EEEEEecCCEEEEEeCcceee---eec-cC
Confidence 3444 5788999999999998 457777777 34566667666554 588889999999998755432 222 23
Q ss_pred CCeEEEEEcc-C--C-CEEEEEeCCCeEE
Q 006360 82 APTAGISFSS-D--D-KIIASVGLDKKLY 106 (648)
Q Consensus 82 ~~V~slafsP-d--g-~~LaSgs~Dg~I~ 106 (648)
..+.++++.. + | ..|++|-.+|.|-
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3467776654 2 2 3688888888764
No 361
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.0074 Score=69.46 Aligned_cols=108 Identities=13% Similarity=0.219 Sum_probs=83.1
Q ss_pred EEEEEccCCCeEEEEEe----CCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCcee
Q 006360 41 RVLDYSRNSRHLLVTAG----DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (648)
Q Consensus 41 ~~Vafspdg~~lLaSgs----~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v 116 (648)
+...|+|... +|+.++ ..|.|.||--. +++.... ...-.++++||+|....|+.|-.-|.+.+|...+.+..
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadt-GEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADT-GEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecC-CCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 4467999888 777665 45788888433 3322111 11223577999999999999999999999998876644
Q ss_pred eEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 117 SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 117 ~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
... .|..+|..+.|+++|+.++++..-|.|.+|.+.
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 433 699999999999999999999999999999876
No 362
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.32 E-value=0.59 Score=51.03 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=112.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEE----ccCCCeE-EEEEe-CC---CeEEEEECCCCCcee
Q 006360 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY----SRNSRHL-LVTAG-DD---GTLHLWDTTGRSPKV 74 (648)
Q Consensus 4 pdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vaf----spdg~~l-LaSgs-~D---g~V~IWDl~t~~~~v 74 (648)
|...+|+...+++-+.+||+ .|+.+..+... .++.|.. .-.++.+ |+.++ .+ ..|++|.+......+
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~G---r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVG---RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecCC---CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 44567888888899999998 78888877532 2232322 1234332 33333 32 579999885432223
Q ss_pred EEecc-------CCCCeEEEEE--cc-CCC-EEEEEeCCCeEEEEeCC---CC----ceeeEeeCCCCeEEEEEeCCCCE
Q 006360 75 SWLKQ-------HSAPTAGISF--SS-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI 136 (648)
Q Consensus 75 ~~l~~-------H~~~V~slaf--sP-dg~-~LaSgs~Dg~I~IWDl~---tg----k~v~~~~h~~~I~slafsPdG~~ 136 (648)
..+.. ....++.+|+ ++ ++. +++....+|.+.-|-+. .+ +.++.+.....+..|+......+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 33322 1234778887 34 454 56667888877766553 44 35677777889999999998899
Q ss_pred EEEEEcCCeEEEEECCCCC--CceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCCC
Q 006360 137 LTAGTSNGRVVFYDIRGKP--QPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (648)
Q Consensus 137 Lasgs~DG~V~IWDl~s~~--~~~~~l~~--~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr~ 210 (648)
|+.+-++--|.-|+..-.. ....+... ......|-.|++... ....+.++++...++...+||...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--------~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--------SDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---------CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--------CCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999999888888886322 11122111 123456777776542 122345566666688999998764
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.25 E-value=0.27 Score=53.51 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=96.0
Q ss_pred CccCCCCEEEEEEC-CC--cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 006360 1 MYNCKDEHLASISL-SG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 1 AFSpdG~~Lasgs~-DG--~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l 77 (648)
+|..||+.|+.++. || .+++.|+.+++..+-..+.. .......++++++.+++ ...+..|+-.|+.+.+.. ...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~~-~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYY-VKNGRSLRRVDLDTLEER-VVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEE-EETTTEEEEEETTT--EE-EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEE-EECCCeEEEEECCcCcEE-EEE
Confidence 58899987665544 44 57888998887665444322 22223566788874444 445578888899887742 233
Q ss_pred ccCCCCeEEEEEc--cCCCEEEEEeC----------------------CCeEEEEeCCCCceeeEeeCCCCeEEEEEeCC
Q 006360 78 KQHSAPTAGISFS--SDDKIIASVGL----------------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD 133 (648)
Q Consensus 78 ~~H~~~V~slafs--Pdg~~LaSgs~----------------------Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPd 133 (648)
......+-...|. .|+..++-.-. .+.|...|+.+|+...++....++.-+.|+|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 3344444445554 36666543211 23577789999998888888889999999994
Q ss_pred -CCEEEEEEc---CCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 134 -DWILTAGTS---NGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 134 -G~~Lasgs~---DG~-V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
...|+.|.+ +.. -+||-++....-.+.+........+.-=-|.+||..|...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 556666654 221 3566665433333333322233445556789999887764
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.25 E-value=0.22 Score=51.02 Aligned_cols=110 Identities=11% Similarity=0.048 Sum_probs=81.9
Q ss_pred ccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCe
Q 006360 46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF 125 (648)
Q Consensus 46 spdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I 125 (648)
.++.+.+++.|+..+.+.--|..++.. .+-......|.+-+.- -|.+++.|...|.+++.+..+|.....+...+.|
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~--~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNL--IWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcE--EeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 455667899999999999999998874 3333334445443333 4778999999999999999999766555444444
Q ss_pred E-EEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 126 S-SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 126 ~-slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
. .....+++..|.+|+.|+..+..|.++.....
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 3 33456789999999999999999999875433
No 365
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.24 E-value=0.65 Score=48.01 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=87.1
Q ss_pred cEEEEEEccCCCeEEEEE--eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEe-CCCCce
Q 006360 39 VLRVLDYSRNSRHLLVTA--GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-PGSRRP 115 (648)
Q Consensus 39 ~V~~Vafspdg~~lLaSg--s~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWD-l~tgk~ 115 (648)
.+...+++++++.+.+.. .....++++...+.. ...+.+ ..+....|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 567789999998554554 233456665544433 222222 2678889999988777777677667663 333432
Q ss_pred e--eEe-e-CCCCeEEEEEeCCCCEEEEEE---cCCeEEEEECCCC-CC-ceEE---Eee-cCCCCCeeEEEEccCCCeE
Q 006360 116 S--SCI-T-YEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGK-PQ-PLTV---LRA-CSSSEAVSSLCWQRAKPVF 182 (648)
Q Consensus 116 v--~~~-~-h~~~I~slafsPdG~~Lasgs---~DG~V~IWDl~s~-~~-~~~~---l~~-~~h~~~VtsLafspdg~~L 182 (648)
. ..- . ....|..+.++|||..++... .++.|+|--+... .. +... +.. ......++++.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 2 221 1 222899999999999988766 3577777655321 11 1111 111 1335689999999977665
Q ss_pred EEe
Q 006360 183 IDE 185 (648)
Q Consensus 183 as~ 185 (648)
+..
T Consensus 181 V~~ 183 (253)
T PF10647_consen 181 VLG 183 (253)
T ss_pred EEe
Confidence 554
No 366
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=96.22 E-value=0.014 Score=51.16 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 604 EILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 604 ~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
|-+-+|.++-+++..-+..+...+.+|++||-+||-||+-||..|
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 344556667777777788889999999999999999999999875
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.22 E-value=0.33 Score=53.47 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=73.7
Q ss_pred EEEEEEccCCCeEEEEEeCCCe----EEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCC-----------e
Q 006360 40 LRVLDYSRNSRHLLVTAGDDGT----LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----------K 104 (648)
Q Consensus 40 V~~Vafspdg~~lLaSgs~Dg~----V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg-----------~ 104 (648)
+..++++|+++.++++.+..|. |+++|+.+++.....+... ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3357899999976666665554 9999999886432222221 122399999988877665433 4
Q ss_pred EEEEeCCCCcee--eEee--CCCC-eEEEEEeCCCCEEEEEEcC----CeEEEEECCCC
Q 006360 105 LYTYDPGSRRPS--SCIT--YEAP-FSSLAFIDDDWILTAGTSN----GRVVFYDIRGK 154 (648)
Q Consensus 105 I~IWDl~tgk~v--~~~~--h~~~-I~slafsPdG~~Lasgs~D----G~V~IWDl~s~ 154 (648)
|++|++.+...- .++. .... ...+..++|+++|+..... ..|++.|+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 889999877532 3332 2222 6788899999998865542 34888888874
No 368
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.51 Score=56.81 Aligned_cols=136 Identities=12% Similarity=0.011 Sum_probs=87.1
Q ss_pred ccCCCCEEEE--EECCCcEEEEECCCCceeE-----EEeC-----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 006360 2 YNCKDEHLAS--ISLSGDLILHNLASGAKAA-----ELKD-----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (648)
Q Consensus 2 FSpdG~~Las--gs~DG~V~IwDl~sg~~i~-----~l~~-----~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t 69 (648)
.++|+...++ .+.+-.|+.||+++-..-. -+.. .......++.|+|.-....+.+..|+.|.+..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 3566655443 3344478899986532111 0111 12234456889987655567788899999888754
Q ss_pred CCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-----CCCCeEEEEEeCCCCEEEE
Q 006360 70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTA 139 (648)
Q Consensus 70 ~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-----h~~~I~slafsPdG~~Las 139 (648)
....+.. ......++|++|+|.|+.++.|-+.|++.-|...- +....+. ....|.||+|-....++++
T Consensus 188 ~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 188 LAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 4322222 23455689999999999999999999998887543 3222221 2478999999876555553
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.06 E-value=0.019 Score=38.13 Aligned_cols=38 Identities=32% Similarity=0.604 Sum_probs=30.6
Q ss_pred ceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 006360 27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (648)
Q Consensus 27 ~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWD 66 (648)
+.+..+.. +...|.+++|++++. ++++++.|+.+++||
T Consensus 3 ~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG-HTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe-cCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34455554 567889999999886 899999999999996
No 370
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.05 E-value=0.13 Score=57.52 Aligned_cols=136 Identities=10% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------CceeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----------SPKVS 75 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~----------~~~v~ 75 (648)
|.+|+..+. +.|.+||+.+++.++.+.. ..|..|.|++++. +++..+. ..++|++.+.. +....
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDV---SAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEec---CCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceE
Confidence 666665554 4799999999999999974 2478899999998 5655554 56777776433 11133
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
.+..-...|.+.+|.-+ .|+..... .|++ +-.|..........++.=+.+.+..+.|++...|+.|..|.+.
T Consensus 191 ~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 191 LIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 44443567999999855 55555555 7777 4445543333346677778888877888888899888888776
No 371
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.064 Score=64.04 Aligned_cols=147 Identities=10% Similarity=0.025 Sum_probs=93.4
Q ss_pred cEEEEEEccCCCeEEE-EEeCCCeEEEEECCCCCcee----E------EeccCCCCeEEEEEcc-CCCEEEEEeCCCeEE
Q 006360 39 VLRVLDYSRNSRHLLV-TAGDDGTLHLWDTTGRSPKV----S------WLKQHSAPTAGISFSS-DDKIIASVGLDKKLY 106 (648)
Q Consensus 39 ~V~~Vafspdg~~lLa-Sgs~Dg~V~IWDl~t~~~~v----~------~l~~H~~~V~slafsP-dg~~LaSgs~Dg~I~ 106 (648)
.+..+..++|+....+ ..+.+-.|+.||++.-.... . ........+.++.|+| ---..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444455556542222 23344579999995432111 1 1122234467889998 334566778888888
Q ss_pred EEeCCCCc-eeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEE
Q 006360 107 TYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFI 183 (648)
Q Consensus 107 IWDl~tgk-~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~--~h~~~VtsLafspdg~~La 183 (648)
+..+.... .+..+......+|++|+|.|+.+++|-..|++.-|...-..+ ..+... .....|.+|+|-....|++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeEEE
Confidence 87765432 333345677889999999999999999999999997764311 111111 1247799999999888887
Q ss_pred Eecc
Q 006360 184 DETT 187 (648)
Q Consensus 184 s~~~ 187 (648)
..+.
T Consensus 260 vy~n 263 (1405)
T KOG3630|consen 260 VYGN 263 (1405)
T ss_pred Eecc
Confidence 7644
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.12 Score=57.50 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=93.9
Q ss_pred EEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCe------EEEEEeCCCeEEEEECCCCCc-eeEEeccCC-
Q 006360 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRH------LLVTAGDDGTLHLWDTTGRSP-KVSWLKQHS- 81 (648)
Q Consensus 10 asgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~------lLaSgs~Dg~V~IWDl~t~~~-~v~~l~~H~- 81 (648)
..+.....|+-.|++.|+.+.+.+-+.. |.-+.+.|+.+. .-+.|-.|+.|+-||.+-... ++.....|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 3455566788899999999988885333 666788886531 123466788899999864332 233333332
Q ss_pred ---CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 82 ---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 82 ---~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
....|++-. ...+|++|+.+|.|++||--..+....+ +...+|..|..+.||++|++.+. .++.+.|+.
T Consensus 428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred ccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 334555544 4458999999999999997332333333 57889999999999999886664 556666664
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.81 E-value=0.38 Score=49.63 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=74.8
Q ss_pred CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceee-----------
Q 006360 49 SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS----------- 117 (648)
Q Consensus 49 g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~----------- 117 (648)
++ .|+.|.++| |++|++......... .+...|..+...++-+.+++-+ |+.|+++|+..-....
T Consensus 7 ~~-~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GD-RLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CC-EEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 44 688888888 999999333221222 2223399999999777766665 4999999987644332
Q ss_pred ----EeeCCCCeEEEE--EeCCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEcc
Q 006360 118 ----CITYEAPFSSLA--FIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 118 ----~~~h~~~I~sla--fsPdG~~Lasgs~DG~V~IWDl~s~~~~~-~~l~~~~h~~~VtsLafsp 177 (648)
.+.....+...+ -...+...++......|.||......... ..++.......+.+++|..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~ 148 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG 148 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence 122223344444 11234444444455689998887642222 3333344568899999983
No 374
>PHA02713 hypothetical protein; Provisional
Probab=95.72 E-value=0.36 Score=55.70 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCCEEEEEECC------CcEEEEECCCCceeEEEeCCCCCc-EEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 006360 5 KDEHLASISLS------GDLILHNLASGAKAAELKDPNEQV-LRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP 72 (648)
Q Consensus 5 dG~~Lasgs~D------G~V~IwDl~sg~~i~~l~~~~~~~-V~~Vafspdg~~lLaSgs~Dg-----~V~IWDl~t~~~ 72 (648)
++..++.||.+ ..+..||..+..- ..+..-.... -.+++ .-+++ +.+.|+.++ .|..||..+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~-~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLA-VIDDT-IYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEE-EECCE-EEEECCcCCCCCCceEEEEECCCCeE
Confidence 44556666643 2477888765542 1222111111 11122 22444 777787654 488899876542
Q ss_pred eeEEeccCCCCe--EEEEEccCCCEEEEEeCCC-----------------------eEEEEeCCCCceeeEeeC-CCCeE
Q 006360 73 KVSWLKQHSAPT--AGISFSSDDKIIASVGLDK-----------------------KLYTYDPGSRRPSSCITY-EAPFS 126 (648)
Q Consensus 73 ~v~~l~~H~~~V--~slafsPdg~~LaSgs~Dg-----------------------~I~IWDl~tgk~v~~~~h-~~~I~ 126 (648)
..+..-.... .+++ .-++++.+.|+.++ .+..||..+.+-...-.. .....
T Consensus 380 --~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 380 --KMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR 456 (557)
T ss_pred --EECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence 2221111111 1111 12677788887653 477788877653322211 11111
Q ss_pred -EEEEeCCCCEEEEEEcCC------eEEEEECCC
Q 006360 127 -SLAFIDDDWILTAGTSNG------RVVFYDIRG 153 (648)
Q Consensus 127 -slafsPdG~~Lasgs~DG------~V~IWDl~s 153 (648)
+++ .-+|.+.+.|+.++ .|..||..+
T Consensus 457 ~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 122 22466667776542 367888886
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.71 E-value=0.018 Score=57.64 Aligned_cols=138 Identities=9% Similarity=0.056 Sum_probs=76.3
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEE-Ec
Q 006360 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGIS-FS 90 (648)
Q Consensus 12 gs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~sla-fs 90 (648)
-+.||.|.-+++...+.-..-...+......+.++ . -++.|+.+|.|++|..................|-++. -.
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c-eEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 45666776666643332111111111112223333 2 5888999999999988632211111112223333332 22
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeeEee-CC-CCeEEEEEeCCCCEEEEE--EcCCeEEEEECCC
Q 006360 91 SDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YE-APFSSLAFIDDDWILTAG--TSNGRVVFYDIRG 153 (648)
Q Consensus 91 Pdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~-~~I~slafsPdG~~Lasg--s~DG~V~IWDl~s 153 (648)
.++.+.++++.|+.|+.|++.-.+.+-..+ |. .++.....+..+..|+.. +.|..++.|++..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 366789999999999999999888776664 44 344444444445555555 5566666666654
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.67 E-value=1.1 Score=50.90 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=89.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCC-----c-E-EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-----V-L-RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~-----~-V-~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+..++.++.++.|+.+|..+|+.+..+...... . + ..+.+. ++. .++.++.++.|+.+|.++++..-+ ..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~W~-~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQVWK-FG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEeee-ec
Confidence 456677888899999999999988777542210 0 0 011111 213 577788899999999998874322 22
Q ss_pred cCCC--CeEEEEEcc--CCCEEEEEe---------CCCeEEEEeCCCCceeeEeeCCC---------------------C
Q 006360 79 QHSA--PTAGISFSS--DDKIIASVG---------LDKKLYTYDPGSRRPSSCITYEA---------------------P 124 (648)
Q Consensus 79 ~H~~--~V~slafsP--dg~~LaSgs---------~Dg~I~IWDl~tgk~v~~~~h~~---------------------~ 124 (648)
.... .-..+.-+| .+.+++.++ .++.|+.+|..+|+.+-.+.... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 1111 001112222 234555553 36789999999998776553210 0
Q ss_pred e-EEEEEeCCCCEEEEEEcCC------------------eEEEEECCCCCCc
Q 006360 125 F-SSLAFIDDDWILTAGTSNG------------------RVVFYDIRGKPQP 157 (648)
Q Consensus 125 I-~slafsPdG~~Lasgs~DG------------------~V~IWDl~s~~~~ 157 (648)
+ ...++.+.+..+++++.++ .|+-+|+.+++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1234455567788887665 6888899888543
No 377
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.58 E-value=1 Score=48.70 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCcEEEEEEccCCCeEEE-EEeCCC---eEEEEECCCCCceeEEeccCCCCe---EEEEEc-cCC-CEEEEEeCCC--eE
Q 006360 37 EQVLRVLDYSRNSRHLLV-TAGDDG---TLHLWDTTGRSPKVSWLKQHSAPT---AGISFS-SDD-KIIASVGLDK--KL 105 (648)
Q Consensus 37 ~~~V~~Vafspdg~~lLa-Sgs~Dg---~V~IWDl~t~~~~v~~l~~H~~~V---~slafs-Pdg-~~LaSgs~Dg--~I 105 (648)
...+..+.|.++++.+++ ....+. .+.++|..++.+.+.........| ..+.|. +++ .+|.....|| .|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 445667889888873333 333333 366778877665443333333333 356665 644 4555555677 57
Q ss_pred EEEeCCCCceeeEeeCCCCeEE-EEEeCCCCEEE-EEEcC----CeEEEEECC-CCCCceEEEeecCCCCCeeEEEEccC
Q 006360 106 YTYDPGSRRPSSCITYEAPFSS-LAFIDDDWILT-AGTSN----GRVVFYDIR-GKPQPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 106 ~IWDl~tgk~v~~~~h~~~I~s-lafsPdG~~La-sgs~D----G~V~IWDl~-s~~~~~~~l~~~~h~~~VtsLafspd 178 (648)
+++|...+....+......|.. +.|+++++.|+ ++..+ ..|+..++. .+ ..+.+. ...+....+.|+|+
T Consensus 263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT--~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLT--CEDGDHYSASFSPD 338 (353)
T ss_dssp EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESS--TTSSTTEEEEE-TT
T ss_pred EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEecc--CCCCCceEEEECCC
Confidence 7778777765544445566744 77888877665 44432 246666666 33 233333 22222269999999
Q ss_pred CCeEEEe
Q 006360 179 KPVFIDE 185 (648)
Q Consensus 179 g~~Las~ 185 (648)
|++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 8887654
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.52 E-value=1.5 Score=45.41 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=99.2
Q ss_pred eeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeE
Q 006360 28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL 105 (648)
Q Consensus 28 ~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg--~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I 105 (648)
.+.++..........+.|..++. ++-+.+.-| .|+.+|+.+++..........---..++.. +++++...=.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 44555533355667788877775 777777666 699999998874322222222222344444 44555566678899
Q ss_pred EEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC---CCeeEEEEccCCCeE
Q 006360 106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS---EAVSSLCWQRAKPVF 182 (648)
Q Consensus 106 ~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~---~~VtsLafspdg~~L 182 (648)
.+||..+.+.+..+...+.=+.++ .||..|+.......|+++|..+.+ ....+...... ..+..+.|. +|...
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 999999999888887766666776 467788888888889999998763 23333322222 335567775 34333
Q ss_pred EEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 183 IDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 183 as~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
|-. +..+..+.+.-.....+.++|+.
T Consensus 189 ANV-W~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 189 ANV-WQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp EEE-TTSSEEEEEETTT-BEEEEEE-H
T ss_pred EEe-CCCCeEEEEeCCCCeEEEEEEhh
Confidence 332 44444444444444444455654
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.73 Score=47.93 Aligned_cols=194 Identities=14% Similarity=0.156 Sum_probs=110.9
Q ss_pred EEEEECCCc-EEEEECCCCceeEEEeCCCC-CcEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCCCceeEEeccCC
Q 006360 9 LASISLSGD-LILHNLASGAKAAELKDPNE-QVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGRSPKVSWLKQHS 81 (648)
Q Consensus 9 Lasgs~DG~-V~IwDl~sg~~i~~l~~~~~-~~V~~Vafspdg~~lLaSgs~-----Dg~V~IWDl~t~~~~v~~l~~H~ 81 (648)
++.+-.-|+ ..++|....+.+..+..... ...-.=.|++||+ +|+..-+ -|.|-|||.+.+-..+-.+..|.
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G 161 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG 161 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCC
Confidence 444444443 45677766665555443211 1111236899999 4544333 36799999987766677788888
Q ss_pred CCeEEEEEccCCCEEEEEeC------------------CCeEEEEeCCCCceeeEee-----CCCCeEEEEEeCCCCEEE
Q 006360 82 APTAGISFSSDDKIIASVGL------------------DKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILT 138 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~------------------Dg~I~IWDl~tgk~v~~~~-----h~~~I~slafsPdG~~La 138 (648)
-....+.|.+||+.++.+.. .-.+.+.|..+|+.+.... +.-.|.-++..+||.+++
T Consensus 162 iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 88899999999999987654 1145566666666554332 345677888888887666
Q ss_pred EEEcCCe----EEEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCCC
Q 006360 139 AGTSNGR----VVFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (648)
Q Consensus 139 sgs~DG~----V~IWDl~s~~~~~~~l~~~-----~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDlr 209 (648)
.+-..|. --+.-...+..+++.+... .-...|-+|+.+.+ ++.+.++.-..+...+||..
T Consensus 242 gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~-----------~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 242 GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR-----------DGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc-----------CCeEEEecCCCCeEEEEEcC
Confidence 5543331 1111111111222222211 11234556666543 44444555556777788876
Q ss_pred CCCCc
Q 006360 210 PSVTT 214 (648)
Q Consensus 210 ~~~~~ 214 (648)
.-.-.
T Consensus 311 tG~vv 315 (366)
T COG3490 311 TGAVV 315 (366)
T ss_pred CCcEE
Confidence 54443
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.051 Score=64.58 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=74.0
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEE---
Q 006360 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSS--- 127 (648)
Q Consensus 52 lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~s--- 127 (648)
.++.|+..|.|...|..+.-...+.-..-..+|++++|+.+|..++.|-.+|.|.+||+..++..+.+. +..+.+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 678888889999999877532233334456789999999999999999999999999999999887773 5555444
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 128 LAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 128 lafsPdG~~Lasgs~DG~V~IWDl 151 (648)
+.+..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 444556667888887775 4443
No 381
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.40 E-value=0.91 Score=50.12 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEEe-------CCCCCcEEEEEEcc-----CC--CeEEEEEeCCCeEEEEECC--
Q 006360 5 KDEHLASISLSGDLILHNLASGAKAAELK-------DPNEQVLRVLDYSR-----NS--RHLLVTAGDDGTLHLWDTT-- 68 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~sg~~i~~l~-------~~~~~~V~~Vafsp-----dg--~~lLaSgs~Dg~V~IWDl~-- 68 (648)
|=-++|.|..+|.+.|.|++....+..-. ......++++.|.- |+ .-++++|...|.+.+|.+.
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 33478999999999999997766665421 12345677788862 22 2367888999999999883
Q ss_pred C-CCce---eEEeccCCCCeEEEE-EccCC--------------------CEEEEEeCCCeEEEEeCCCCceeeEeeCCC
Q 006360 69 G-RSPK---VSWLKQHSAPTAGIS-FSSDD--------------------KIIASVGLDKKLYTYDPGSRRPSSCITYEA 123 (648)
Q Consensus 69 t-~~~~---v~~l~~H~~~V~sla-fsPdg--------------------~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~ 123 (648)
. +.-. ......+.+.|..|. |+.+. +.++....+..++++..-+.+...... +.
T Consensus 176 ~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~ 254 (395)
T PF08596_consen 176 SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DD 254 (395)
T ss_dssp GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS
T ss_pred CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-cc
Confidence 1 1111 112234556666555 32211 223444456779999998877654443 33
Q ss_pred --CeEEEEEe-----CCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEe
Q 006360 124 --PFSSLAFI-----DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 124 --~I~slafs-----PdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~--~h~~~VtsLafspdg~~Las~ 185 (648)
.+..+++- ..+..|++-..+|.|++|.+-..+. +..+... .+...+...+|.++|..++-.
T Consensus 255 ~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 255 PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-IKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp -EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E-EEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH-hhcccCCCccccccccccEECCCCCEEEEe
Confidence 23344452 3577888899999999999998643 3333321 122335567778888776665
No 382
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.27 E-value=1.4 Score=47.22 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=93.7
Q ss_pred CEEEEEECCCcEEEEECC-CCceeEEE---eCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-EeccC
Q 006360 7 EHLASISLSGDLILHNLA-SGAKAAEL---KDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLKQH 80 (648)
Q Consensus 7 ~~Lasgs~DG~V~IwDl~-sg~~i~~l---~~~~~~-~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~-~l~~H 80 (648)
+.+.+-|.||.+.-..+. .|+..... .....+ .+..-++...+..+++ -+.+|.|+--|+........ .+.--
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCccccc
Confidence 356677889999888887 45544221 111222 2222344444443444 57889999989877653211 11100
Q ss_pred ----------CCCeEEEEEccCCCEEEEEeCCC----------eEEEEeCCCCceeeEeeCCCCeEEEEEeCCCC-EEEE
Q 006360 81 ----------SAPTAGISFSSDDKIIASVGLDK----------KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTA 139 (648)
Q Consensus 81 ----------~~~V~slafsPdg~~LaSgs~Dg----------~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~-~Las 139 (648)
.+.-.-+++++..++|++--..| .|+++|+.+++.+..+....++.+|..+.|.+ +|++
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 11234477887555555432221 69999999999999998777899999998766 4544
Q ss_pred EE-cCCeEEEEECCCCCCceEEEeecC
Q 006360 140 GT-SNGRVVFYDIRGKPQPLTVLRACS 165 (648)
Q Consensus 140 gs-~DG~V~IWDl~s~~~~~~~l~~~~ 165 (648)
.+ .++.|.+||..++ +.+..+...+
T Consensus 307 ~~~~~~~l~v~D~~tG-k~~~~~~~lG 332 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATG-KLVRSIEQLG 332 (342)
T ss_dssp EETTTTEEEEEETTT---EEEEE---S
T ss_pred EcCCCCeEEEEeCcCC-cEEeehhccC
Confidence 43 5789999999998 4455555333
No 383
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=95.23 E-value=0.12 Score=50.83 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 006360 579 FQRTLEETLDSFQKSIHEDMRNLHIE--------------ILRQFHMQETQMSNVMSSIL----ENQAELMKEIKSLRKE 640 (648)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~lh~~--------------~~r~~~~~~~e~~~~~~~~~----~~~~~l~~e~~~lr~e 640 (648)
.|..|+-.|..||+.+...|.+-+.+ .++.....=.||..+|..-. ++-.+..+.+.+|..|
T Consensus 89 hq~alelIM~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de~~~~~~qe~i~qL~~E 168 (181)
T PF05769_consen 89 HQSALELIMSKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQSQAEKICEMAAVMRKAIELDEENSQEEQEIIAQLETE 168 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhHhHHHHHHHHHHH
Confidence 45666778888998888777554432 33333333347777774332 3345778899999999
Q ss_pred HHHHHhhC
Q 006360 641 NHQLRQLL 648 (648)
Q Consensus 641 ~~~lr~~~ 648 (648)
|+.||.+|
T Consensus 169 N~~LRelL 176 (181)
T PF05769_consen 169 NKGLRELL 176 (181)
T ss_pred HHHHHHHH
Confidence 99999986
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.21 E-value=0.67 Score=53.67 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCCEEEEEECC-C-----cEEEEECCCCceeEEEeCCCCCcE-EEEEEccCCCeEEEEEeCCCe-----EEEEECCCCCc
Q 006360 5 KDEHLASISLS-G-----DLILHNLASGAKAAELKDPNEQVL-RVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGRSP 72 (648)
Q Consensus 5 dG~~Lasgs~D-G-----~V~IwDl~sg~~i~~l~~~~~~~V-~~Vafspdg~~lLaSgs~Dg~-----V~IWDl~t~~~ 72 (648)
+|...++||.| | ++.+||..+.+-.. +..-..... ..++. -+|. +.+.|+.||. |-.||..+.+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~-l~g~-iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV-LDGK-LYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE-ECCE-EEEEeccccccccccEEEecCCCCcc
Confidence 45667888888 3 57888887665322 221111111 11111 1344 8888998864 77888877653
Q ss_pred eeEEeccCCCCeEEEEEcc-CCCEEEEEeCCC------eEEEEeCCCCceeeEee--CCCCeEEEEEeCCCCEEEEEEcC
Q 006360 73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDK------KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSN 143 (648)
Q Consensus 73 ~v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg------~I~IWDl~tgk~v~~~~--h~~~I~slafsPdG~~Lasgs~D 143 (648)
...........+..... ++++.++||.|+ .+..||..+++-...-. ..-.-..++. -++.+.++|+.|
T Consensus 409 --~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 409 --TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFD 485 (571)
T ss_pred --cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCcc
Confidence 22222222333333333 788888888665 57889988876443322 1111111222 256778888877
Q ss_pred Ce-----EEEEECCCC
Q 006360 144 GR-----VVFYDIRGK 154 (648)
Q Consensus 144 G~-----V~IWDl~s~ 154 (648)
+. |..||..+.
T Consensus 486 ~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 486 GTSALSSVERYDPETN 501 (571)
T ss_pred CCCccceEEEEcCCCC
Confidence 63 788888876
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.20 E-value=0.79 Score=53.09 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCEEEEEECCC------cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 006360 6 DEHLASISLSG------DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK 73 (648)
Q Consensus 6 G~~Lasgs~DG------~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D------g~V~IWDl~t~~~~ 73 (648)
+..++.||.++ .+..||..++.......-.....-.++++.. + .++++|+.| ..+..||....+.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W- 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQW- 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCce-
Confidence 45667777773 5888998776433322211222233344443 3 488899988 3578888876652
Q ss_pred eEEeccCCCCeEEEEEcc-CCCEEEEEeCCC-----eEEEEeCCCCceeeEeeCCCCeEEEEE-eCCCCEEEEEEcCC--
Q 006360 74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK-----KLYTYDPGSRRPSSCITYEAPFSSLAF-IDDDWILTAGTSNG-- 144 (648)
Q Consensus 74 v~~l~~H~~~V~slafsP-dg~~LaSgs~Dg-----~I~IWDl~tgk~v~~~~h~~~I~slaf-sPdG~~Lasgs~DG-- 144 (648)
..+..-...-..+.... +|.+.++||.|| .|-.||..+.+-...-........... .-+|.+.++|+.++
T Consensus 362 -~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 -TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred -eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 11111111111111112 788999999997 588888887664333222222222222 22677777887654
Q ss_pred ----eEEEEECCCC
Q 006360 145 ----RVVFYDIRGK 154 (648)
Q Consensus 145 ----~V~IWDl~s~ 154 (648)
.|..||..+.
T Consensus 441 ~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 441 NCLNSVECYDPETN 454 (571)
T ss_pred cccceEEEEcCCCC
Confidence 4788888875
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.20 E-value=0.5 Score=50.34 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=79.2
Q ss_pred CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--C----CceeEEeccCCCCeEEEEE
Q 006360 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--R----SPKVSWLKQHSAPTAGISF 89 (648)
Q Consensus 16 G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t--~----~~~v~~l~~H~~~V~slaf 89 (648)
|.|+.+|. .+..++.+.. +-..-+.|+|+||++.++++=+..+.|+-|++.. . ......+....+..-.++.
T Consensus 143 G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred ceEEEEcC-CCCEEEeecC-cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence 34555554 4555544443 3344567999999996666666668898888752 1 1112223334566677888
Q ss_pred ccCCCEEEEEeCCC-eEEEEeCCCCceeeEeeCC-CCeEEEEEe-CCCCEEEEEE
Q 006360 90 SSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYE-APFSSLAFI-DDDWILTAGT 141 (648)
Q Consensus 90 sPdg~~LaSgs~Dg-~I~IWDl~tgk~v~~~~h~-~~I~slafs-PdG~~Lasgs 141 (648)
..+|++.+++..+| .|.+|+.. ++.+..+... ..+++++|- ++.+.|++.+
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88898886555554 89999998 8888777655 778888885 3445544433
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.20 E-value=0.054 Score=54.35 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEE-EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-CC
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV-LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-AP 83 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~-Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~-~~ 83 (648)
+..+++|..+|.|++|++.--..+......-...|-+ |.-..++. +.++++.||.|+.|++.-.+. +-....|. ..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNKV-LGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccc-eeEEeccCCceeeeccccCce-eeeeccccCCC
Confidence 3467889999999999986222222111111223322 22222232 889999999999999976663 34444555 33
Q ss_pred eEEEEEccCCCEEEEE--eCCCeEEEEeCC
Q 006360 84 TAGISFSSDDKIIASV--GLDKKLYTYDPG 111 (648)
Q Consensus 84 V~slafsPdg~~LaSg--s~Dg~I~IWDl~ 111 (648)
+..+.....+..|+.. +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 4333333344444444 555555555544
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.19 E-value=0.33 Score=54.84 Aligned_cols=139 Identities=13% Similarity=0.199 Sum_probs=87.5
Q ss_pred CcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEccC----CCEEEEEeCCCeEEEEeCC
Q 006360 38 QVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD----DKIIASVGLDKKLYTYDPG 111 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs--~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPd----g~~LaSgs~Dg~I~IWDl~ 111 (648)
.+++.++|. ||+.++++.- .+|.+++=|- ...+.-..|+.+.|.|- ..-++..-..+.|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 356778887 5665666542 3333332221 11233345999999983 3456666777889999985
Q ss_pred -----CCceeeE----eeCCCC--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 006360 112 -----SRRPSSC----ITYEAP--FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP 180 (648)
Q Consensus 112 -----tgk~v~~----~~h~~~--I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~ 180 (648)
.++.+.. +...-+ -..+.|+|...+|++-.....-.+++++.....++. .....+.|.|.||.+||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka--Di~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA--DIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE--eccCCceEEEEEecCcCC
Confidence 2232221 111222 257889999999888777766677788765433322 225678999999999999
Q ss_pred eEEEecc
Q 006360 181 VFIDETT 187 (648)
Q Consensus 181 ~Las~~~ 187 (648)
.|+.+-.
T Consensus 169 RLVVAvG 175 (671)
T PF15390_consen 169 RLVVAVG 175 (671)
T ss_pred EEEEEeC
Confidence 8877633
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=1.7 Score=45.54 Aligned_cols=153 Identities=13% Similarity=0.185 Sum_probs=100.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-----
Q 006360 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS----- 75 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~----- 75 (648)
.|||+.+.|++......-.||=...|+.+..+.-.--.-.-.+.|..+++ ++++--.++.++++.+......+.
T Consensus 92 Tynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 92 TYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCccEEeccceE
Confidence 48999998888877777777766789998877632212223467776665 555656778888877654421111
Q ss_pred ----EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeE--e-e-------CCCCeEEEEEeC-CCCEEEE
Q 006360 76 ----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSC--I-T-------YEAPFSSLAFID-DDWILTA 139 (648)
Q Consensus 76 ----~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-~v~~--~-~-------h~~~I~slafsP-dG~~Las 139 (648)
...........++|.|..+.|+.+-+-.-+.||.+.... .+.. . . .-..|.++.|++ .+..|+.
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence 111114457889999988888888777767777665332 1111 1 1 123467788887 4677888
Q ss_pred EEcCCeEEEEECCCC
Q 006360 140 GTSNGRVVFYDIRGK 154 (648)
Q Consensus 140 gs~DG~V~IWDl~s~ 154 (648)
+.+++.|.-.|....
T Consensus 251 S~ESr~l~Evd~~G~ 265 (316)
T COG3204 251 SDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCceEEEEecCCC
Confidence 888998888888765
No 390
>PRK10115 protease 2; Provisional
Probab=95.05 E-value=6.6 Score=46.63 Aligned_cols=170 Identities=8% Similarity=-0.034 Sum_probs=88.1
Q ss_pred ccCCCCEEEEEEC-C----CcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCC
Q 006360 2 YNCKDEHLASISL-S----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRS 71 (648)
Q Consensus 2 FSpdG~~Lasgs~-D----G~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D-----g~V~IWDl~t~~ 71 (648)
|+|||++|+.+-. + ..|++.|+.+|..+...-. ..-..++|.+|++.++++...+ ..|+.|++.+..
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 6899998876532 2 3588999988864332211 1114589999998777765533 368888887762
Q ss_pred c-eeEEeccCCCCeEEEEEcc-CCCEEEEEeCC---CeEEEEeCC--CCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC-
Q 006360 72 P-KVSWLKQHSAPTAGISFSS-DDKIIASVGLD---KKLYTYDPG--SRRPSSCITYEAPFSSLAFIDDDWILTAGTSN- 143 (648)
Q Consensus 72 ~-~v~~l~~H~~~V~slafsP-dg~~LaSgs~D---g~I~IWDl~--tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D- 143 (648)
. ....+........-..+.. ++++++..+.. +.+.+|+.. .+.....+.+...+..-..+. +..|+.-+..
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~tn~~ 289 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLRSNRH 289 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEEEcCC
Confidence 1 1223333333333233434 78776655443 478888853 344333333333322212222 2344433332
Q ss_pred ---CeEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006360 144 ---GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176 (648)
Q Consensus 144 ---G~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafs 176 (648)
..|...++..... ...+........|..+.+.
T Consensus 290 ~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~ 324 (686)
T PRK10115 290 GKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF 324 (686)
T ss_pred CCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE
Confidence 2344445543211 2333311122357777776
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.04 E-value=3.9 Score=46.99 Aligned_cols=201 Identities=9% Similarity=-0.036 Sum_probs=107.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE----------EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR----------VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~----------~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~ 75 (648)
+..|++++.++.|+-+|..+|+.+.++.......+. .+++. +. .++.+..|+.|.-+|..+++..-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEee
Confidence 456777888899999999999998877632111111 11222 23 466778899999999998884322
Q ss_pred EeccCCCCeEEEEEcc--CCCEEEEEe------CCCeEEEEeCCCCceeeEeeC---C----------------------
Q 006360 76 WLKQHSAPTAGISFSS--DDKIIASVG------LDKKLYTYDPGSRRPSSCITY---E---------------------- 122 (648)
Q Consensus 76 ~l~~H~~~V~slafsP--dg~~LaSgs------~Dg~I~IWDl~tgk~v~~~~h---~---------------------- 122 (648)
.-......-..+.-.| .+..|+.+. .+|.|..+|..+|+.+-.+.. .
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 2111111001111122 233444443 268999999999987654321 0
Q ss_pred -------CCe-EEEEEeCCCCEEEEEEcC-----C-----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006360 123 -------APF-SSLAFIDDDWILTAGTSN-----G-----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 123 -------~~I-~slafsPdG~~Lasgs~D-----G-----------~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspd 178 (648)
+.+ ..+.+++...+|+.+..+ + .|.-.|+++++.. -.++...|.. ....+ +.
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~-W~~Q~~~~D~--wD~d~-~~ 301 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK-WHYQTTPHDE--WDYDG-VN 301 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE-EeeeCCCCCC--ccccC-CC
Confidence 011 134666666677766632 2 4666677776422 2222222322 11111 11
Q ss_pred CCeEEEe-ccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 179 KPVFIDE-TTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 179 g~~Las~-~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
...|+.. .......+++.+..++.+.+.|.+.-..
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2233322 1111224666777788888888765443
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=1.1 Score=46.71 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=87.6
Q ss_pred CccCCCCEEEEEECC-----CcEEEEECCCC-ceeEEEeCCCCCcEEEEEEccCCCeEEEEEe------CCC--------
Q 006360 1 MYNCKDEHLASISLS-----GDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------DDG-------- 60 (648)
Q Consensus 1 AFSpdG~~Lasgs~D-----G~V~IwDl~sg-~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs------~Dg-------- 60 (648)
.||+||.+|...-+| |.|=|||...+ +.+.++.. |+-.-+.+.|.+||+.+++..+ +-|
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 599999999765433 67999998643 45566665 4444567899999994333322 111
Q ss_pred ---eEEEEECCCCCce-eEEec--cCCCCeEEEEEccCCCEEEEEeCCCe-----EEEEeCCCCceeeEee--------C
Q 006360 61 ---TLHLWDTTGRSPK-VSWLK--QHSAPTAGISFSSDDKIIASVGLDKK-----LYTYDPGSRRPSSCIT--------Y 121 (648)
Q Consensus 61 ---~V~IWDl~t~~~~-v~~l~--~H~~~V~slafsPdg~~LaSgs~Dg~-----I~IWDl~tgk~v~~~~--------h 121 (648)
.+.+.|..++... .+.+. .+.-.|..++..+|+..++-|-..|. ..+=-...++.+..+. .
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence 1223332222211 11122 23445788888888877766644331 1111123344444332 3
Q ss_pred CCCeEEEEEeCCCCEEEE-EEcCCeEEEEECCCC
Q 006360 122 EAPFSSLAFIDDDWILTA-GTSNGRVVFYDIRGK 154 (648)
Q Consensus 122 ~~~I~slafsPdG~~Las-gs~DG~V~IWDl~s~ 154 (648)
...|-+++.+.+..+++. .-..+...+||..++
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 456778888865455554 445566889999988
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.97 E-value=0.63 Score=53.97 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=68.2
Q ss_pred eEEEEEccCCCEEEEEeCC-CeEEEEeCCCCceeeEe--eCCCCeEEEEEe--CCCCEEEEEEcCCeEEEEECC-----C
Q 006360 84 TAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSCI--TYEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIR-----G 153 (648)
Q Consensus 84 V~slafsPdg~~LaSgs~D-g~I~IWDl~tgk~v~~~--~h~~~I~slafs--PdG~~Lasgs~DG~V~IWDl~-----s 153 (648)
+.-+.-+.-++ ++....+ ..+.|||.+.+...... ...+.|.++.|. |||+.+++.+..+.|.+|.-. .
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344444344 4444444 48999999988754433 458899999997 589999999999999998542 1
Q ss_pred CC---CceEEEeecCCC-CCeeEEEEccCCCeEEEe
Q 006360 154 KP---QPLTVLRACSSS-EAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 154 ~~---~~~~~l~~~~h~-~~VtsLafspdg~~Las~ 185 (648)
.. .+++.+....|+ .+|.+.+|.++|.+++..
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence 11 234444444555 689999999988777766
No 394
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.96 E-value=1.7 Score=46.69 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=109.1
Q ss_pred ccCCCCEEEEEEC--CCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-CCCceeE---
Q 006360 2 YNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-GRSPKVS--- 75 (648)
Q Consensus 2 FSpdG~~Lasgs~--DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~-t~~~~v~--- 75 (648)
++.||+++++... -..|.|-|+..++.+.++.. .+.+. .-|.++.-|.+-|.||.+.-..+. .++....
T Consensus 102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~---iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWL---IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEE---EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred EccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEE---EEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 5667777665433 34588888888888887764 22222 223332347788889999888886 3332211
Q ss_pred EeccCCCCe-EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeE--ee-----------CCCCeEEEEEeCCCCEEEEEE
Q 006360 76 WLKQHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--IT-----------YEAPFSSLAFIDDDWILTAGT 141 (648)
Q Consensus 76 ~l~~H~~~V-~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~--~~-----------h~~~I~slafsPdG~~Lasgs 141 (648)
.+..-.+++ ..-++...+..++-.+.+|.|+-.|+........ +. ..+...-+++++..+.|++--
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 122222222 2344555555666688999999999876653221 11 122334577887655555432
Q ss_pred c---CC-------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe-eCCCeEEcCCCCC
Q 006360 142 S---NG-------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG-AVGDSILMPDPLP 210 (648)
Q Consensus 142 ~---DG-------~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~-s~D~~IkvWDlr~ 210 (648)
. +| .|.+||+.+.+ .+..+. -..++.+|..+.+ +..+|++. ..++.+.+||...
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~---l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHK-RVARIP---LEHPIDSIAVSQD-----------DKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTE-EEEEEE---EEEEESEEEEESS-----------SS-EEEEEETTTTEEEEEETTT
T ss_pred cCCCCCCccCCceEEEEEECCCCe-EEEEEe---CCCccceEEEccC-----------CCcEEEEEcCCCCeEEEEeCcC
Confidence 2 11 38888888873 233333 2345778888764 44455443 3478999999986
Q ss_pred CCCcc
Q 006360 211 SVTTS 215 (648)
Q Consensus 211 ~~~~s 215 (648)
-....
T Consensus 322 Gk~~~ 326 (342)
T PF06433_consen 322 GKLVR 326 (342)
T ss_dssp --EEE
T ss_pred CcEEe
Confidence 55443
No 395
>smart00340 HALZ homeobox associated leucin zipper.
Probab=94.83 E-value=0.03 Score=40.65 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 006360 627 QAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 627 ~~~l~~e~~~lr~e~~~lr~~ 647 (648)
-+.|.+||++|++|.++||.+
T Consensus 14 ce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 14 CESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 367999999999999999986
No 396
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=94.72 E-value=0.23 Score=51.96 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 576 LQLFQRTLEETLDSFQKSIHEDMRNL--HIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~l--h~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
++.+++++.+.+.-++..++.=...+ +++-++.+..++.|-..|.+++.+ ++....+.++|++||+|||++|
T Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~-l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 36 LSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLE-LESRLQELEQLEAENARLRELL 109 (276)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888888888887776544443 345555566666666666655332 4444444558899999999986
No 397
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.67 E-value=3.7 Score=44.87 Aligned_cols=174 Identities=11% Similarity=0.159 Sum_probs=85.5
Q ss_pred cEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeC---CCe-EEEEECCCCCceeEEeccCC--CCeEEEEEc
Q 006360 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGT-LHLWDTTGRSPKVSWLKQHS--APTAGISFS 90 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~---Dg~-V~IWDl~t~~~~v~~l~~H~--~~V~slafs 90 (648)
.|...|+.+|+....+. ...-+..+.|+|....+|+-|.. +.. -+||-+++.......+..|. ..+..=-|.
T Consensus 169 ~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 35556777776554444 34566778999988777776643 332 46776644332244444443 234445688
Q ss_pred cCCCEEEEEeC-----CCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC----------------CeEEEE
Q 006360 91 SDDKIIASVGL-----DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN----------------GRVVFY 149 (648)
Q Consensus 91 Pdg~~LaSgs~-----Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D----------------G~V~IW 149 (648)
|||..|...+. +..|.-+|+.+++........ +..-+--++||++++-=+.| -.|+++
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 99988776433 447888899888765443332 34444456788877643332 146778
Q ss_pred ECCCCCCceEEEeec-------CCCC--CeeEEEEccCCCeEEEeccCCCCeEEE
Q 006360 150 DIRGKPQPLTVLRAC-------SSSE--AVSSLCWQRAKPVFIDETTCKAETALL 195 (648)
Q Consensus 150 Dl~s~~~~~~~l~~~-------~h~~--~VtsLafspdg~~Las~~~~~~~~~lv 195 (648)
++..... ..+..+ .+.. .=..+.|+|||++++..++..+...+.
T Consensus 326 ~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 326 DVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 8876421 222221 1111 134689999999987765544444333
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.60 E-value=0.037 Score=64.51 Aligned_cols=154 Identities=10% Similarity=-0.011 Sum_probs=87.3
Q ss_pred CCCeEEEEECCC--CC----ceeEEeccCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEE-
Q 006360 58 DDGTLHLWDTTG--RS----PKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS- 127 (648)
Q Consensus 58 ~Dg~V~IWDl~t--~~----~~v~~l~~H~~~V~slafsP---dg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~s- 127 (648)
.-|.+.|||++- ++ ..++........+.-|.|.| +.-+++++-.++.|++.............|..++..
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDM 230 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccH
Confidence 347788999842 11 22334444445567777776 667777777788887766544322111124443332
Q ss_pred ----------EEEeCCCCEEEEEEcCCeEEEEECCCCC-CceEE-EeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEE
Q 006360 128 ----------LAFIDDDWILTAGTSNGRVVFYDIRGKP-QPLTV-LRACSSS-EAVSSLCWQRAKPVFIDETTCKAETAL 194 (648)
Q Consensus 128 ----------lafsPdG~~Lasgs~DG~V~IWDl~s~~-~~~~~-l~~~~h~-~~VtsLafspdg~~Las~~~~~~~~~l 194 (648)
-.++|||..++..+.||.|++|.+.-.. ...++ +....|. .+-.|.-|+.+.+..+.. ..-.++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i---~~w~~~ 307 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI---GKWVLR 307 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc---ceeEEE
Confidence 2378999999999999999988775211 11111 1112444 333333355443333332 123344
Q ss_pred EEeeC-CCeEEcCCCCCCCCc
Q 006360 195 LGGAV-GDSILMPDPLPSVTT 214 (648)
Q Consensus 195 vs~s~-D~~IkvWDlr~~~~~ 214 (648)
++++. .+.+++|.-.++.+.
T Consensus 308 Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 308 ITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EecccCCcceeEeeccchhhh
Confidence 55544 677899988777765
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.13 Score=61.21 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce--eeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 006360 92 DDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (648)
Q Consensus 92 dg~~LaSgs~Dg~I~IWDl~tgk~--v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~ 169 (648)
.+..|+.|+..|.|-..|+...-. ..-....++|++++|+.+|..++.|..+|.|.+||+... ++++.+.. |..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e--~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITE--HGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeee--cCCc
Confidence 466788999999999888876422 122235789999999999999999999999999999987 56677764 4444
Q ss_pred eeEE
Q 006360 170 VSSL 173 (648)
Q Consensus 170 VtsL 173 (648)
++++
T Consensus 175 ~t~v 178 (1206)
T KOG2079|consen 175 VTGV 178 (1206)
T ss_pred cceE
Confidence 4443
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.51 E-value=6.1 Score=42.05 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeC-CCCc
Q 006360 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRR 114 (648)
Q Consensus 36 ~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl-~tgk 114 (648)
....+..+..+++++ +++++.......-||--...-.. .-+.....|..+.|.|++.+.+.+ ..|.|++=|. ....
T Consensus 143 ~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 456677888889998 66666555555677764332112 223456789999999998776644 8888888872 2222
Q ss_pred eeeE--e---eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEe-ecCCCCCeeEEEEccCCCeEEEe
Q 006360 115 PSSC--I---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 115 ~v~~--~---~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~-~~~h~~~VtsLafspdg~~Las~ 185 (648)
.... . .....+..++|.+++...++|+ .|. .++..+.++. .+... ...-...++.|.|..+.+-++.+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEEEC
Confidence 2111 1 1233488999999877766554 453 3445555533 22222 12234567888887654444444
No 401
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.45 E-value=0.8 Score=50.54 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=71.7
Q ss_pred EeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---------CCCCeEEEEEeC-----CC---CEEE
Q 006360 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFID-----DD---WILT 138 (648)
Q Consensus 76 ~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---------h~~~I~slafsP-----dG---~~La 138 (648)
.+....+.|++++.+ |=.+++.|..+|.+.|.|+|....+.... ....|+++.|.- |+ -.|+
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 344557889999997 66789999999999999999877665532 234688888873 33 4688
Q ss_pred EEEcCCeEEEEECCC-CCC--ceEEEeec-CCCCCeeEEE-EccCCCe--EEEe-------ccCCCCeEEEEeeCCCeEE
Q 006360 139 AGTSNGRVVFYDIRG-KPQ--PLTVLRAC-SSSEAVSSLC-WQRAKPV--FIDE-------TTCKAETALLGGAVGDSIL 204 (648)
Q Consensus 139 sgs~DG~V~IWDl~s-~~~--~~~~l~~~-~h~~~VtsLa-fspdg~~--Las~-------~~~~~~~~lvs~s~D~~Ik 204 (648)
+|+..|.+.+|.+.- ... .+...... .+.++|..|. |+.+... +++. .......+++.++ +..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceE
Confidence 999999999998751 111 11112211 4667777766 4333222 2211 0011223444444 77788
Q ss_pred cCCCCCCC
Q 006360 205 MPDPLPSV 212 (648)
Q Consensus 205 vWDlr~~~ 212 (648)
++.+-...
T Consensus 239 v~~~~~~k 246 (395)
T PF08596_consen 239 VFKPPKSK 246 (395)
T ss_dssp EE-TT---
T ss_pred EEeCCCCc
Confidence 87665433
No 402
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.45 E-value=4.2 Score=46.73 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=86.3
Q ss_pred cEEEEECCCCceeEEEeCCCCCc--------EEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCcee--------EE--
Q 006360 17 DLILHNLASGAKAAELKDPNEQV--------LRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKV--------SW-- 76 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~--------V~~Vafspdg~--~lLaSgs~Dg~V~IWDl~t~~~~v--------~~-- 76 (648)
.|.-.|+++|+....++..+.+. ..-+.+..+++ .+++.+..+|.+++.|-.+++... ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 57788999999988887533211 11133334554 578889999999999998877421 00
Q ss_pred -eccCC------------------CCe-----------EEEEEccCCCEEEEEeCC------------------------
Q 006360 77 -LKQHS------------------APT-----------AGISFSSDDKIIASVGLD------------------------ 102 (648)
Q Consensus 77 -l~~H~------------------~~V-----------~slafsPdg~~LaSgs~D------------------------ 102 (648)
+.... ..+ ..++++|+..+++....+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00000 000 125566655555544333
Q ss_pred ---------CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCce
Q 006360 103 ---------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (648)
Q Consensus 103 ---------g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~ 158 (648)
+.|.-+|+.+++.+-......+...-.+.-.+.+++.++.||.++.+|.++++...
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 35777888888877655433332211122245677788889999999999995443
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.44 E-value=7 Score=46.86 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=70.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCC-------cEEEEEEcc----------------CCCeEEEEEeCCCeE
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-------VLRVLDYSR----------------NSRHLLVTAGDDGTL 62 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~-------~V~~Vafsp----------------dg~~lLaSgs~Dg~V 62 (648)
+..|+.++.++.|+-.|..+|+.+.++.-.... .++.+.+.. .++ .|+.+..|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence 556777888899999999999998887632211 123344321 222 57778889999
Q ss_pred EEEECCCCCceeEEeccCCCCe-------------EEEEEcc--CCCEEEEEeC----------CCeEEEEeCCCCceee
Q 006360 63 HLWDTTGRSPKVSWLKQHSAPT-------------AGISFSS--DDKIIASVGL----------DKKLYTYDPGSRRPSS 117 (648)
Q Consensus 63 ~IWDl~t~~~~v~~l~~H~~~V-------------~slafsP--dg~~LaSgs~----------Dg~I~IWDl~tgk~v~ 117 (648)
+-.|.++++.+. .+ +..+.| ..+.-.| .+..|++++. +|.|+-+|.++|+.+-
T Consensus 273 iALDA~TGk~~W-~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLCE-DF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEEE-Ee-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998887432 11 221111 1112223 2445666643 6889999999999875
Q ss_pred Ee
Q 006360 118 CI 119 (648)
Q Consensus 118 ~~ 119 (648)
.+
T Consensus 351 ~~ 352 (764)
T TIGR03074 351 AW 352 (764)
T ss_pred EE
Confidence 54
No 404
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.39 E-value=2.7 Score=50.29 Aligned_cols=165 Identities=7% Similarity=0.090 Sum_probs=105.4
Q ss_pred cEEEEECCCCceeEEEeCCCCCc---EEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEeccC--C
Q 006360 17 DLILHNLASGAKAAELKDPNEQV---LRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQH--S 81 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~~~~---V~~Vafspdg~~lLaSgs----------~Dg~V~IWDl~t~~~~v~~l~~H--~ 81 (648)
.++++|-++-+.++..+....+. |..+.|..|.+.+++.|. ..|.|.||.+.... .+.....+ .
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLELVAETVVK 829 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-ceeeeeeeeec
Confidence 36777776666555444322232 333458877555666653 24778888876622 13333332 3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe-eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~-~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~ 160 (648)
+.|.++..- +|+++|.- ...|++|+..+++.++.- .+..++..+...-.|..|++|.--+.+.+.-.+..+..+..
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 455555432 67776644 458999999988655443 57788888888888999999999888888777665444455
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEe
Q 006360 161 LRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+....+..+++++.+-.+..|+.+.
T Consensus 907 vArD~~p~Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYLGAE 931 (1096)
T ss_pred eehhhCccceeeEEEecCceEEeec
Confidence 5555677888888877655555443
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.35 E-value=11 Score=42.08 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=90.4
Q ss_pred CCEEEEEECCCcEEEEECCCCc-----eeEEEeCCCCCcEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCC-------
Q 006360 6 DEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYS---RNSRHLLVTAGDDGTLHLWDTTGR------- 70 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~-----~i~~l~~~~~~~V~~Vafs---pdg~~lLaSgs~Dg~V~IWDl~t~------- 70 (648)
.+.|++|+.+|.++||+..... .+-+.+ -+.+|-.|..- +..+...++.=.-..+.||.+...
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 4689999999999999985433 222332 34566666643 222222333356678888887211
Q ss_pred -CceeEEeccCC--CCeEEEEEcc----C-CCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEc
Q 006360 71 -SPKVSWLKQHS--APTAGISFSS----D-DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 71 -~~~v~~l~~H~--~~V~slafsP----d-g~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~ 142 (648)
...+..+..|. ...+.+++-| . ..+|++-+.||.+.+|+-+.-.....+...--...++|.+.-..+++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 12244455553 2344455544 2 47889999999999999665443333333222345677887778999988
Q ss_pred CCeEEEEECC
Q 006360 143 NGRVVFYDIR 152 (648)
Q Consensus 143 DG~V~IWDl~ 152 (648)
+..|..|...
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 8888888663
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.30 E-value=2.6 Score=46.60 Aligned_cols=197 Identities=11% Similarity=0.075 Sum_probs=90.5
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----ceeEEEeC---CC---CCcEEEEEEccCCCeEEEEE--eCC----CeEEEEEC
Q 006360 5 KDEHLASIS-LSGDLILHNLASG----AKAAELKD---PN---EQVLRVLDYSRNSRHLLVTA--GDD----GTLHLWDT 67 (648)
Q Consensus 5 dG~~Lasgs-~DG~V~IwDl~sg----~~i~~l~~---~~---~~~V~~Vafspdg~~lLaSg--s~D----g~V~IWDl 67 (648)
+.++|+..+ ..+.|+|+|+.+. +..+.+.. .. -..-+.+-..|+|+ +++++ ..+ |-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777665 6789999998742 23333331 00 01122233457887 66654 222 45778888
Q ss_pred CCCCceeEEeccC--CCCeEEEEEccCCCEEEEEeC--------------------CCeEEEEeCCCCceeeEeeCC---
Q 006360 68 TGRSPKVSWLKQH--SAPTAGISFSSDDKIIASVGL--------------------DKKLYTYDPGSRRPSSCITYE--- 122 (648)
Q Consensus 68 ~t~~~~v~~l~~H--~~~V~slafsPdg~~LaSgs~--------------------Dg~I~IWDl~tgk~v~~~~h~--- 122 (648)
++.+..-.+-... ...-+++-|.|..+.+++... ...|.+||+.+.+.++.+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8766433332222 234578889999999888643 348999999999999998644
Q ss_pred CCeEEEEEe--CCCCEEEEEE-cCCeEEEEEC-CCCCCc-eEEEeecCC-----------------CCCeeEEEEccCCC
Q 006360 123 APFSSLAFI--DDDWILTAGT-SNGRVVFYDI-RGKPQP-LTVLRACSS-----------------SEAVSSLCWQRAKP 180 (648)
Q Consensus 123 ~~I~slafs--PdG~~Lasgs-~DG~V~IWDl-~s~~~~-~~~l~~~~h-----------------~~~VtsLafspdg~ 180 (648)
.....|.|. |+..+=++|+ -..+|..|-. ..+.-. .+++..... ..-|+.|..+.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 234556665 4444444333 3444555543 322111 122221110 23478888887755
Q ss_pred eEEEeccCCCCeEEEEeeCCCeEEcCCCCCCCC
Q 006360 181 VFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (648)
Q Consensus 181 ~Las~~~~~~~~~lvs~s~D~~IkvWDlr~~~~ 213 (648)
+ +++++-.+|.|+.||+.....
T Consensus 325 f-----------LYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 325 F-----------LYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp E-----------EEEEETTTTEEEEEE-SSTTS
T ss_pred E-----------EEEEcccCCcEEEEecCCCCC
Confidence 5 455566799999999975443
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.23 E-value=0.015 Score=67.60 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=80.1
Q ss_pred CcEEEEECC--CCceeEEEe----CCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 006360 16 GDLILHNLA--SGAKAAELK----DPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (648)
Q Consensus 16 G~V~IwDl~--sg~~i~~l~----~~~~~~V~~Vafspd--g~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~sl 87 (648)
|.+.|||+. .|+....+. ...+..+.-|.|.|- .+-+++.+-.++.|++..+.... ...+..|...+.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccH
Confidence 568889875 354333222 222334455566552 22367777788888887775543 23456677666554
Q ss_pred E-----------EccCCCEEEEEeCCCeEEEEeCC-CC----ceeeEe-eCC-CCeEEEEEeCC-------CCE--EEEE
Q 006360 88 S-----------FSSDDKIIASVGLDKKLYTYDPG-SR----RPSSCI-TYE-APFSSLAFIDD-------DWI--LTAG 140 (648)
Q Consensus 88 a-----------fsPdg~~LaSgs~Dg~I~IWDl~-tg----k~v~~~-~h~-~~I~slafsPd-------G~~--Lasg 140 (648)
+ .+|||..|+.++.||.+++|.+. +| +|+... .|. .+-.|..|+.+ +.+ ++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 3 58899999999999988888763 22 233333 243 33334334332 222 2333
Q ss_pred E-cCCeEEEEECCCCCCc
Q 006360 141 T-SNGRVVFYDIRGKPQP 157 (648)
Q Consensus 141 s-~DG~V~IWDl~s~~~~ 157 (648)
+ .+..+++|......++
T Consensus 311 td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCcceeEeeccchhhh
Confidence 3 3455888887766443
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.07 E-value=1.9 Score=43.77 Aligned_cols=93 Identities=10% Similarity=0.116 Sum_probs=65.8
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEE--CCCCCc----eeEEecc---CC-CCeEEEEEccCCCEEEEEeCCCeEEEEe
Q 006360 40 LRVLDYSRNSRHLLVTAGDDGTLHLWD--TTGRSP----KVSWLKQ---HS-APTAGISFSSDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 40 V~~Vafspdg~~lLaSgs~Dg~V~IWD--l~t~~~----~v~~l~~---H~-~~V~slafsPdg~~LaSgs~Dg~I~IWD 109 (648)
-+.++|..+.+.+.++-+.+-.|.-|| ..++.. .+..++. .. -..-.+++.-+|++.+++-+.++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356889988887777878888898888 444331 1222221 11 1123455566899999999999999999
Q ss_pred CCCCceeeEee-CCCCeEEEEEeC
Q 006360 110 PGSRRPSSCIT-YEAPFSSLAFID 132 (648)
Q Consensus 110 l~tgk~v~~~~-h~~~I~slafsP 132 (648)
..+|+.+..+. ....|+|++|--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 99999988875 466799999963
No 409
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=93.99 E-value=0.072 Score=42.57 Aligned_cols=27 Identities=41% Similarity=0.664 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 622 SILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 622 ~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
.++.+-+.|..|+++|++||.+||.+|
T Consensus 30 ~vL~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 30 KVLLDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999986
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.85 E-value=1.8 Score=47.16 Aligned_cols=139 Identities=15% Similarity=0.209 Sum_probs=77.5
Q ss_pred EEEEEEccCCCeEEEEEe-----------CCC-eEEEEECCCC--C-ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCe
Q 006360 40 LRVLDYSRNSRHLLVTAG-----------DDG-TLHLWDTTGR--S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK 104 (648)
Q Consensus 40 V~~Vafspdg~~lLaSgs-----------~Dg-~V~IWDl~t~--~-~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~ 104 (648)
...|+|.++|+ ++++.. ..+ .|.+++-..+ + .....+.......+.++|.+++ ++ ++.....
T Consensus 16 P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPDI 92 (367)
T ss_pred CceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCeE
Confidence 34589999998 555432 223 6777765322 1 1233444444557889999888 44 4444544
Q ss_pred EEEEeCCC-C----ceeeE---eeC-----CCCeEEEEEeCCCCEEEEEEc-------------------CCeEEEEECC
Q 006360 105 LYTYDPGS-R----RPSSC---ITY-----EAPFSSLAFIDDDWILTAGTS-------------------NGRVVFYDIR 152 (648)
Q Consensus 105 I~IWDl~t-g----k~v~~---~~h-----~~~I~slafsPdG~~Lasgs~-------------------DG~V~IWDl~ 152 (648)
+++.|... + +...+ +.. ......++|.|||.+.++-+. .|.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 44546532 1 21112 211 344778999999986664431 1446666665
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 153 s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
+.. +.++. .+ ......++|+++|.++++.
T Consensus 173 g~~--~e~~a-~G-~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 173 GGK--LRVVA-HG-FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CCe--EEEEe-cC-cCCCccceECCCCCEEEEc
Confidence 542 23332 12 2345688999988776664
No 411
>PHA03098 kelch-like protein; Provisional
Probab=93.66 E-value=2 Score=49.08 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=69.6
Q ss_pred CCEEEEEECCC------cEEEEECCCCceeEEEeCCC--CCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 006360 6 DEHLASISLSG------DLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP 72 (648)
Q Consensus 6 G~~Lasgs~DG------~V~IwDl~sg~~i~~l~~~~--~~~V~~Vafspdg~~lLaSgs~D-----g~V~IWDl~t~~~ 72 (648)
+..++.||.++ .+..||..+.+.. .+.... ......+.+ ++. +++.|+.+ ..+..||..+...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF--NNR-IYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE--CCE-EEEEeCCCCCEecceEEEEcCCCCce
Confidence 44556666442 5778887665442 222111 111122222 344 77777765 3477888876542
Q ss_pred eeEEecc--CCCCeEEEEEccCCCEEEEEeCC------CeEEEEeCCCCceeeEeeCC--CCeEEEEEeCCCCEEEEEEc
Q 006360 73 KVSWLKQ--HSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCITYE--APFSSLAFIDDDWILTAGTS 142 (648)
Q Consensus 73 ~v~~l~~--H~~~V~slafsPdg~~LaSgs~D------g~I~IWDl~tgk~v~~~~h~--~~I~slafsPdG~~Lasgs~ 142 (648)
..... +...-.+++. -++++++.||.+ ..+..||..+++-...-... ..-.+++ .-++.+++.|+.
T Consensus 371 --~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~ 446 (534)
T PHA03098 371 --REEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGI 446 (534)
T ss_pred --eeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCc
Confidence 22211 1111112222 256777777732 35889998876533222111 1111222 235566666654
Q ss_pred C--------CeEEEEECCCC
Q 006360 143 N--------GRVVFYDIRGK 154 (648)
Q Consensus 143 D--------G~V~IWDl~s~ 154 (648)
+ ..+.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred cCCCCCcccceEEEecCCCC
Confidence 3 23888998865
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.51 E-value=1.8 Score=50.85 Aligned_cols=119 Identities=7% Similarity=0.086 Sum_probs=79.2
Q ss_pred CeEEEEEcc--CCCEEEEEeCCCeEEEEeCCC-------C-------------ceeeEeeCCCCeEEEEEe--CCCCEEE
Q 006360 83 PTAGISFSS--DDKIIASVGLDKKLYTYDPGS-------R-------------RPSSCITYEAPFSSLAFI--DDDWILT 138 (648)
Q Consensus 83 ~V~slafsP--dg~~LaSgs~Dg~I~IWDl~t-------g-------------k~v~~~~h~~~I~slafs--PdG~~La 138 (648)
.|+.+...- +...|+.|..||.|.+|.++. . ++...+.....+++++++ ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 355555443 567889999999999996621 0 123334467789999998 7788999
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC-eEEEEeeCCCeEEcCCC
Q 006360 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE-TALLGGAVGDSILMPDP 208 (648)
Q Consensus 139 sgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~-~~lvs~s~D~~IkvWDl 208 (648)
+++....|.||-.............+.|...|.+|+|-++.. +..+ ..+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~-------d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDL-------DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCC-------CCccceEEEEEeccCcEEEEEE
Confidence 999888888886654222112222334677899999987521 1112 36677778898888877
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.50 E-value=1.6 Score=50.70 Aligned_cols=107 Identities=17% Similarity=0.320 Sum_probs=70.5
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEeCC-----CC--
Q 006360 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPG-----SR-- 113 (648)
Q Consensus 43 Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsP--dg~~LaSgs~Dg~I~IWDl~-----tg-- 113 (648)
+.-+.-++ +.+.-+....+.|||.+.............+.|.+++|.. +++.|++.|..+.|.+|--. ..
T Consensus 35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33444444 3333344567999999887643333334578899999965 99999999999999988531 11
Q ss_pred --ceeeEe---eC-CCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 114 --RPSSCI---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 114 --k~v~~~---~h-~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
..+..+ .+ ..+|.+..|.++|..++.. ++.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 123333 23 3689999999998765544 3468888754
No 414
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=93.37 E-value=0.88 Score=38.97 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 621 SSILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 621 ~~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
..|..++.+|..|++.|.+||++||.-
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888864
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=12 Score=39.37 Aligned_cols=162 Identities=9% Similarity=0.051 Sum_probs=99.8
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 006360 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 37 ~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v-~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~ 115 (648)
...+..+.++.+ +.+.+.++.-++|.|+.+..... ..+....+..+++.. .|++...+..|.-+.++|+.+...
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 344556667643 56677788889999997765332 222222244455555 489999888777788899887653
Q ss_pred eeEe---e-CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 006360 116 SSCI---T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (648)
Q Consensus 116 v~~~---~-h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~ 191 (648)
-... . .......++.+ |++-..+..|+-+.|.|+.+...|..+-. ......+.++..+++.-+++.. ..+
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdnr~y~vvy---~eg 234 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDNRAYLVVY---DEG 234 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCCeeEEEEc---ccc
Confidence 3322 2 23333566665 66777888899999999998766544332 2233478888888877776665 133
Q ss_pred eEEEEeeCCCeEEcCCCC
Q 006360 192 TALLGGAVGDSILMPDPL 209 (648)
Q Consensus 192 ~~lvs~s~D~~IkvWDlr 209 (648)
.+++-.+......+++..
T Consensus 235 vlivd~s~~ssp~~~gsy 252 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSY 252 (370)
T ss_pred eEEEecCCCCCceEeecc
Confidence 444444434444444433
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.34 E-value=2.5 Score=48.08 Aligned_cols=115 Identities=9% Similarity=0.090 Sum_probs=74.7
Q ss_pred CcEEEEEEccC----CCeEEEEEeCCCeEEEEECCC-----CCceeEEeccCC----CCeEEEEEccCCCEEEEEeCCCe
Q 006360 38 QVLRVLDYSRN----SRHLLVTAGDDGTLHLWDTTG-----RSPKVSWLKQHS----APTAGISFSSDDKIIASVGLDKK 104 (648)
Q Consensus 38 ~~V~~Vafspd----g~~lLaSgs~Dg~V~IWDl~t-----~~~~v~~l~~H~----~~V~slafsPdg~~LaSgs~Dg~ 104 (648)
+-|+.+.|.|- .. -+++....+.|.||.+.- .+..+....... ---..+.|+|....|++-..+..
T Consensus 57 EhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 45788999985 33 344556778999999841 221111111111 12356889998888877776666
Q ss_pred EEEEeCCCCc--eeeEeeCCCCeEEEEEeCCCCEEEEEEcCC-eEEEEECCC
Q 006360 105 LYTYDPGSRR--PSSCITYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRG 153 (648)
Q Consensus 105 I~IWDl~tgk--~v~~~~h~~~I~slafsPdG~~Lasgs~DG-~V~IWDl~s 153 (648)
-.+++++... ...-+...+.|.|.+|.+||+.|+++-... .-+|||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5677776433 333346788999999999999888765442 367888654
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.18 E-value=3.1 Score=45.36 Aligned_cols=136 Identities=12% Similarity=0.136 Sum_probs=72.9
Q ss_pred CccCCCCEEEEEE-----------CCC-cEEEEECCC--Cce--eEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 006360 1 MYNCKDEHLASIS-----------LSG-DLILHNLAS--GAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (648)
Q Consensus 1 AFSpdG~~Lasgs-----------~DG-~V~IwDl~s--g~~--i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~I 64 (648)
+|.++|+++++-. ..+ .|.+++-.+ |+. ...+.. .....+.++|.+++ ++++ ..+...++
T Consensus 20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~-~~~~i~~~ 95 (367)
T TIGR02604 20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVA-TPPDILFL 95 (367)
T ss_pred eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEe-CCCeEEEE
Confidence 5778888776642 223 677776433 332 223332 22344678888776 4554 34333334
Q ss_pred EECCCC-----C--ceeEEecc----CCCCeEEEEEccCCCEEEEEeCC-------------------CeEEEEeCCCCc
Q 006360 65 WDTTGR-----S--PKVSWLKQ----HSAPTAGISFSSDDKIIASVGLD-------------------KKLYTYDPGSRR 114 (648)
Q Consensus 65 WDl~t~-----~--~~v~~l~~----H~~~V~slafsPdg~~LaSgs~D-------------------g~I~IWDl~tgk 114 (648)
.|.... + ..+..+.. +....+.++|.|||.+.++.+.. +.|.-+|...++
T Consensus 96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 455321 1 11111211 12347789999999877765521 345555655544
Q ss_pred eeeEee-CCCCeEEEEEeCCCCEEEEEE
Q 006360 115 PSSCIT-YEAPFSSLAFIDDDWILTAGT 141 (648)
Q Consensus 115 ~v~~~~-h~~~I~slafsPdG~~Lasgs 141 (648)
.. .+. .......++|+++|+++++-.
T Consensus 176 ~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 LR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EE-EEecCcCCCccceECCCCCEEEEcc
Confidence 32 222 223346788888888766543
No 418
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.10 E-value=0.47 Score=39.41 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 607 RQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 607 r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
-....+|+|...+ .++...|.+|++.|++||+|||+
T Consensus 18 eti~~Lq~e~eeL----ke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 18 ETIALLQMENEEL----KEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344566665544 44466677888888888888875
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.07 E-value=2.3 Score=50.58 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=57.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCC---------CCce---eeEe---------eCCCCeEEEEEeCC---CCEE
Q 006360 82 APTAGISFSSDDKIIASVGLDKKLYTYDPG---------SRRP---SSCI---------TYEAPFSSLAFIDD---DWIL 137 (648)
Q Consensus 82 ~~V~slafsPdg~~LaSgs~Dg~I~IWDl~---------tgk~---v~~~---------~h~~~I~slafsPd---G~~L 137 (648)
-.|..|.++|+|.+++..|..|.+.+.=.+ .|+. .+.+ .....|..+.|+|. +.+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358889999999999999987743332211 1111 1111 13456889999996 6899
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEe
Q 006360 138 TAGTSNGRVVFYDIRGKPQPLTVLR 162 (648)
Q Consensus 138 asgs~DG~V~IWDl~s~~~~~~~l~ 162 (648)
++-+.|+.+++||+.....+.+++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987766666665
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.04 E-value=0.35 Score=36.66 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 121 h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
....|.+++|+|...+||.++.||.|.||.+..
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 456799999999999999999999999999943
No 421
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.79 E-value=5.3 Score=41.99 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=74.4
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--ccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 006360 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l--~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~ 115 (648)
..+.++.|+|+.+.+|++ .+...-.||=-..++. +..+ .+ -.....|+|.-+++++++--.++.+.++.+.....
T Consensus 86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~Gdl-irtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDL-IRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEe-cCCCceEEEEecCCce-EEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 448999999999955554 4445444554444442 3322 22 23356678887888877777788888887665421
Q ss_pred ee-----Ee-----eC-CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 116 SS-----CI-----TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 116 v~-----~~-----~h-~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
+. .+ .+ ......++|+|....|+..-+..=+.||.+...
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 11 11 12 556789999999888888888777888777654
No 422
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.77 E-value=0.013 Score=64.17 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=95.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH 80 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~-~H 80 (648)
|-+.+..++.++.+..|..||- .++.+-+.. .....-.++|..++...++.+...+.+++||+.........+. .|
T Consensus 42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred EecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 5566666888888888999984 555554443 2233345889888887777888899999999976542111111 12
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee-CCCCeEEEEEeCCCCEEEE
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA 139 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~-h~~~I~slafsPdG~~Las 139 (648)
.... +.|++....++.+...+.+.||+.++.+.+...+ |...+++++|.+.+..+..
T Consensus 119 s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 119 SKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred hHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 2222 6788888888889899999999999887766666 8899999999987655443
No 423
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.68 E-value=5.6 Score=47.82 Aligned_cols=127 Identities=15% Similarity=0.200 Sum_probs=82.1
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCC----------CeEEEEEccCCCEEEEEeCC
Q 006360 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSA----------PTAGISFSSDDKIIASVGLD 102 (648)
Q Consensus 37 ~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~----~~~v~~l~~H~~----------~V~slafsPdg~~LaSgs~D 102 (648)
+....+|+|+|.....||.....|+..|||+... ...+.....+.+ .-..|+|..+.+.|+.++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 3456789999988778999999999999999211 111222222222 23478898888888877755
Q ss_pred CeEEEEeCCCCceee-Ee--eCCCCeEEEEEeCC--CCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 006360 103 KKLYTYDPGSRRPSS-CI--TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS 166 (648)
Q Consensus 103 g~I~IWDl~tgk~v~-~~--~h~~~I~slafsPd--G~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h 166 (648)
.+.++|+++..... .. .....|..+.-+++ +..++.. ...|.+.|+.........+-...|
T Consensus 225 -~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~~~~~~~llSwkH 290 (765)
T PF10214_consen 225 -KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSSSEKLTRLLSWKH 290 (765)
T ss_pred -ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCCCCCeeeeeeccc
Confidence 58999999876533 22 35677888888886 3333332 356888888874323333333334
No 424
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.45 E-value=0.52 Score=39.88 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 602 HIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 602 h~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
+-+|++|...+|.-|..|++. +.+..+|++.|+.||+-|.++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~R----ve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDR----VEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888877777766 456789999999999999875
No 425
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.43 E-value=0.89 Score=46.34 Aligned_cols=48 Identities=29% Similarity=0.411 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 600 NLHIEILRQFHMQETQMSNVMS-------SILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 600 ~lh~~~~r~~~~~~~e~~~~~~-------~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
.-|+|.|||-|.--+.|..++. ...+....|++|+..|+.|.+++|+-
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999998888888873 44555666777888888888888763
No 426
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.15 E-value=10 Score=40.59 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=90.0
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCe------EEEEECCCC--C-cee-----EEeccCCC--------CeEEEEEccCC
Q 006360 36 NEQVLRVLDYSRNSRHLLVTAGDDGT------LHLWDTTGR--S-PKV-----SWLKQHSA--------PTAGISFSSDD 93 (648)
Q Consensus 36 ~~~~V~~Vafspdg~~lLaSgs~Dg~------V~IWDl~t~--~-~~v-----~~l~~H~~--------~V~slafsPdg 93 (648)
.-+.+..+.+.+++. .+++.++++. ++.+++... . ..+ ..+..-.+ ..-+|++.+++
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 345677888986555 5666788888 766666431 0 001 11111111 34578886688
Q ss_pred CEEEEEeCC------CeEEEEeCCCCceeeEe----------------eCCCCeEEEEEeCCCCEEEEEEc-----CC--
Q 006360 94 KIIASVGLD------KKLYTYDPGSRRPSSCI----------------TYEAPFSSLAFIDDDWILTAGTS-----NG-- 144 (648)
Q Consensus 94 ~~LaSgs~D------g~I~IWDl~tgk~v~~~----------------~h~~~I~slafsPdG~~Lasgs~-----DG-- 144 (648)
.++++-=.+ ..|+.+|.. |+....+ .....+..|+++|||+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877777 788888876 5543332 13445789999999997766544 22
Q ss_pred ---------eEEEEECCCCCCceEEEeec-C------CCCCeeEEEEccCCCeEEEe
Q 006360 145 ---------RVVFYDIRGKPQPLTVLRAC-S------SSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 145 ---------~V~IWDl~s~~~~~~~l~~~-~------h~~~VtsLafspdg~~Las~ 185 (648)
.|..||..+...+...+... . ....|..+.+.+++++++..
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 23445555422222222211 1 45778999999999988776
No 427
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.02 E-value=2.2 Score=47.12 Aligned_cols=127 Identities=10% Similarity=0.006 Sum_probs=65.2
Q ss_pred CCcEEEEECCCCceeEEEeCCCCC-cEEEEEEc--cCCCeEEEEEeCCCeEEEEEC-CCCCce---eEEecc--------
Q 006360 15 SGDLILHNLASGAKAAELKDPNEQ-VLRVLDYS--RNSRHLLVTAGDDGTLHLWDT-TGRSPK---VSWLKQ-------- 79 (648)
Q Consensus 15 DG~V~IwDl~sg~~i~~l~~~~~~-~V~~Vafs--pdg~~lLaSgs~Dg~V~IWDl-~t~~~~---v~~l~~-------- 79 (648)
..+|++||+.+.+.++++.-.... ..-.|.|. |+..+-|+.+.-..+|..|-. +.+.-. +..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 357999999999999998864433 34456665 445555666666777776644 222211 111111
Q ss_pred ---------CCCCeEEEEEccCCCEEEE-EeCCCeEEEEeCCCCce---eeEeeC-----------------CCCeEEEE
Q 006360 80 ---------HSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGSRRP---SSCITY-----------------EAPFSSLA 129 (648)
Q Consensus 80 ---------H~~~V~slafsPdg~~LaS-gs~Dg~I~IWDl~tgk~---v~~~~h-----------------~~~I~sla 129 (648)
-..-|++|.++.|.++|+. +-.+|.|+.||+.+... +-.+.. .+....+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 0245799999998887754 55689999999987432 222111 12236678
Q ss_pred EeCCCCEEEEEE
Q 006360 130 FIDDDWILTAGT 141 (648)
Q Consensus 130 fsPdG~~Lasgs 141 (648)
.|-||+.|++.+
T Consensus 381 lS~DGkRlYvTn 392 (461)
T PF05694_consen 381 LSLDGKRLYVTN 392 (461)
T ss_dssp E-TTSSEEEEE-
T ss_pred EccCCeEEEEEe
Confidence 888888887654
No 428
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.01 E-value=4.3 Score=41.90 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=65.4
Q ss_pred CeEEEEEccCCCEEEEEe--CC-CeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEE-CCCCCCce
Q 006360 83 PTAGISFSSDDKIIASVG--LD-KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD-IRGKPQPL 158 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs--~D-g~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWD-l~s~~~~~ 158 (648)
.+...++++++..++... .+ ..|+++..... .........+..-.|++++...+....+...+++. ........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 588899999999887776 33 35666654432 22222344788889999988887777777667763 23322222
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 006360 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~ 185 (648)
..+......+.|+++.++|||..++.-
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEE
Confidence 222222222389999999999887765
No 429
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.95 E-value=0.5 Score=35.84 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=29.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR 114 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk 114 (648)
...|.+++|+|...+||.+..||.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=2.8 Score=48.83 Aligned_cols=49 Identities=20% Similarity=0.437 Sum_probs=34.9
Q ss_pred EEEEECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 006360 18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 18 V~IwDl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~ 70 (648)
|+||+. +|..+..+.-.|...| .+.|+.+.. |++...||++++|++-+.
T Consensus 66 I~If~~-sG~lL~~~~w~~~~lI-~mgWs~~ee--LI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 66 IRIFNI-SGQLLGRILWKHGELI-GMGWSDDEE--LICVQKDGTVHVYGLLGE 114 (829)
T ss_pred EEEEec-cccchHHHHhcCCCee-eecccCCce--EEEEeccceEEEeecchh
Confidence 777776 6776665544355444 589998875 666689999999998554
No 431
>PHA02713 hypothetical protein; Provisional
Probab=91.77 E-value=1.7 Score=50.33 Aligned_cols=141 Identities=10% Similarity=0.116 Sum_probs=74.5
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCceeE--EEeCCCCCcEEEEEEccCCCeEEEEEeCCC-----------------
Q 006360 5 KDEHLASISLSG-----DLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----------------- 60 (648)
Q Consensus 5 dG~~Lasgs~DG-----~V~IwDl~sg~~i~--~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg----------------- 60 (648)
+|+..+.||.++ .+..||..+.+-.. .+... ......+.+ ++. +.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEE--CCE-EEEEeCCCcccccccccccccccccc
Confidence 566667777654 37888876543221 11110 111111222 444 777777542
Q ss_pred ------eEEEEECCCCCceeEEecc-CCCCeE-EEEEccCCCEEEEEeCCC------eEEEEeCCC-CceeeE--eeCC-
Q 006360 61 ------TLHLWDTTGRSPKVSWLKQ-HSAPTA-GISFSSDDKIIASVGLDK------KLYTYDPGS-RRPSSC--ITYE- 122 (648)
Q Consensus 61 ------~V~IWDl~t~~~~v~~l~~-H~~~V~-slafsPdg~~LaSgs~Dg------~I~IWDl~t-gk~v~~--~~h~- 122 (648)
.|..||..+.+. ..+.. ...... +++ .-++++.+.|+.++ .+..||..+ .+-... +...
T Consensus 427 ~~~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIW--ETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccceEEEECCCCCeE--eecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 477888876542 11111 111111 222 22577777777642 467899987 553322 2211
Q ss_pred CCeEEEEEeCCCCEEEEEEcCC--eEEEEECCCC
Q 006360 123 APFSSLAFIDDDWILTAGTSNG--RVVFYDIRGK 154 (648)
Q Consensus 123 ~~I~slafsPdG~~Lasgs~DG--~V~IWDl~s~ 154 (648)
.....+.+ +|.+.++|+.|| .|..||+.+.
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 11222222 678888999888 6888888876
No 432
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=91.75 E-value=0.51 Score=45.91 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 620 MSSILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 620 ~~~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
++.-+.++..|.+.|++|.+|||+||.|
T Consensus 50 lQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 50 LQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444667888888888999999987
No 433
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=91.74 E-value=1.1 Score=41.61 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 582 TLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKEN 641 (648)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~ 641 (648)
-|...+.++.+.|+..|..=|.+||.|+-..+ +++.+++.+...++.|..-+++||+|.
T Consensus 37 kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~-~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 37 KLNFDIQELDKRIRSQVTSNHEDLLSQASSIE-ELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778899999999999999999998755 566699999999999999999999885
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=9.3 Score=42.38 Aligned_cols=137 Identities=16% Similarity=0.154 Sum_probs=88.6
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 006360 42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119 (648)
Q Consensus 42 ~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~--~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~ 119 (648)
.+-|...++ +|++ -..|.+.-|-+.+.. ..+.......++|.++.|++|.+.|++--.|+.|.+++....+.....
T Consensus 27 gvFfDDaNk-qlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 27 GVFFDDANK-QLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ceeeccCcc-eEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344544444 3333 344566677765432 234444456679999999999999999999999999998544433222
Q ss_pred -----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 006360 120 -----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (648)
Q Consensus 120 -----~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las 184 (648)
.....|...+|... .-+|.....| +-+|-+...+..++.++ .|.-.|.-..|.++-+.+.-
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEee
Confidence 13345888999866 4566666666 77777765544445555 56667777778777655433
No 435
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.39 E-value=2.7 Score=33.73 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=39.8
Q ss_pred HHHHHHHhHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 591 QKSIHEDMRN---LHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 591 ~~~~~~~~~~---lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
|.++-+||+. ++=| |+.++.-.-.+..-+++-..+..+|..||++|++|.+.||.
T Consensus 3 QsaL~~EirakQ~~~eE-L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEE-LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444432 3333 35567767777788888888999999999999999999984
No 436
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=91.38 E-value=0.43 Score=37.47 Aligned_cols=28 Identities=32% Similarity=0.359 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 620 MSSILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 620 ~~~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
++-+.+.+++|++.|.+|..||+.||+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667889999999999999999985
No 437
>PRK10115 protease 2; Provisional
Probab=91.32 E-value=24 Score=41.97 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=69.0
Q ss_pred CcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCC------CeEEE
Q 006360 38 QVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYT 107 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs~Dg----~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~D------g~I~I 107 (648)
-.+..+.|+|+++.++++...+| .|++.|+.++......+.. .-..++|.+|++.|+....+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999996555544444 4888899877532222222 12569999988877666543 37888
Q ss_pred EeCCCC--ceeeEee-CCCCeE-EEEEeCCCCEEEEEEc---CCeEEEEECC
Q 006360 108 YDPGSR--RPSSCIT-YEAPFS-SLAFIDDDWILTAGTS---NGRVVFYDIR 152 (648)
Q Consensus 108 WDl~tg--k~v~~~~-h~~~I~-slafsPdG~~Lasgs~---DG~V~IWDl~ 152 (648)
+++.++ +...++. ...... .+..+.|+.+++..+. ++.+.+|+..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 999888 3333443 223333 2233447887775544 4568898853
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.31 E-value=23 Score=37.76 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=64.8
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeEeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-~v~~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
...-...+..+..++|+.+++++..-..+.-||-.... ..........|..|.|.|++.+.+++ ..|.|++=+.....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34445678888889999998888777777788865432 22222356789999999998776654 88888887722211
Q ss_pred CceEE--EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCe
Q 006360 156 QPLTV--LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (648)
Q Consensus 156 ~~~~~--l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~ 202 (648)
..... .........+..++|.+++...+.++ .+.++++.....+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg---~G~l~~S~DgGkt 264 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG---SGTLLVSTDGGKT 264 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES---TT-EEEESSTTSS
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC---CccEEEeCCCCcc
Confidence 11111 11112233488999999887777662 3455555544333
No 439
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.29 E-value=0.52 Score=49.62 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 614 TQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 614 ~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
.|=..|.+++.+-.++|....+.|++||+|||+||
T Consensus 73 ~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 73 YENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444433323455555555888888888876
No 440
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.24 E-value=11 Score=40.07 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCce---eEEEeCCC-CCcEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCC
Q 006360 5 KDEHLASISLS-----GDLILHNLASGAK---AAELKDPN-EQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGR 70 (648)
Q Consensus 5 dG~~Lasgs~D-----G~V~IwDl~sg~~---i~~l~~~~-~~~V~~Vafspdg~~lLaSgs~-----Dg~V~IWDl~t~ 70 (648)
++.+++.|+.+ ..+..||+.+.+. ...+.... ...-.+++.. ++. +++.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~-iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGT-LYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCE-EEEEeCcCCCccCceEEEEcCCCC
Confidence 34455666654 2567777765543 12221111 1111122222 344 6666664 246888998766
Q ss_pred CceeEEecc--CCCCeEEEEEccCCCEEEEEeCCC----eEEEEeCCCCceeeEeeC---CCCe---EEE-EEeCCCCEE
Q 006360 71 SPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCITY---EAPF---SSL-AFIDDDWIL 137 (648)
Q Consensus 71 ~~~v~~l~~--H~~~V~slafsPdg~~LaSgs~Dg----~I~IWDl~tgk~v~~~~h---~~~I---~sl-afsPdG~~L 137 (648)
+- ..+.. ........+...++++++.|+.++ .+.+||+.+.+-...-.. ..+. ... +...++.++
T Consensus 150 ~W--~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 150 EW--FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred Ce--eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 52 22221 111222222233677888887764 356889887654322111 1111 111 122356777
Q ss_pred EEEEcC
Q 006360 138 TAGTSN 143 (648)
Q Consensus 138 asgs~D 143 (648)
+.|+.+
T Consensus 228 v~GG~~ 233 (323)
T TIGR03548 228 CIGGFN 233 (323)
T ss_pred EECCcC
Confidence 777765
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=2.4 Score=46.75 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=84.1
Q ss_pred CCCEEEEEECCCcEEEEECCC--CceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee---EEecc
Q 006360 5 KDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV---SWLKQ 79 (648)
Q Consensus 5 dG~~Lasgs~DG~V~IwDl~s--g~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v---~~l~~ 79 (648)
|.+..+.+-..|.+.=|-+.. ......+.....+.|.+++|++|.+ +|+.--.|+.|.+++....+... +..+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 444444444556666676532 2334455555677999999999998 88888899999999985544322 22333
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc-eeeEe-eCCCCeEEEEEeCCCCEEEEEE
Q 006360 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGT 141 (648)
Q Consensus 80 H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk-~v~~~-~h~~~I~slafsPdG~~Lasgs 141 (648)
....|..++|..+ .-++.....| +-+|.....+ .++.. .+...|.--.|+++-+.++.++
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 4456999999854 6677776666 4454433221 22222 4667777778888766655443
No 442
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.94 E-value=0.29 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 619 VMSSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 619 ~~~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
-|+++...+.+|.||++.|+.||+.||+
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566777777777777777775
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=90.83 E-value=26 Score=37.66 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEE-EECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCce
Q 006360 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHL-WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (648)
Q Consensus 37 ~~~V~~Vafspdg~~lLaSgs~Dg~V~I-WDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~ 115 (648)
...+.++.+.+++. ++ ..+..|.+.. +|-....- ......-...++++.+.+++..+++ +..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~-~v-~~g~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YV-AVSSRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCe-EE-EEeCCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45678888988875 44 4455565553 22221111 1122233457899999998887665 4567665433444443
Q ss_pred eeEee-----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEEe
Q 006360 116 SSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFIDE 185 (648)
Q Consensus 116 v~~~~-----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~-~~h~~~VtsLafspdg~~Las~ 185 (648)
-.... ....+..+.+.+++..+++ +.+|.|. +....++ ....+.. ..-....+.+.|..+++.++.+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC-CCeECCcCCCCCcceEEEEEeCCCceEEEC
Confidence 32221 2245788899988775554 4567554 3444432 2222221 1122357778877666555554
No 444
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=90.80 E-value=0.73 Score=48.56 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 603 IEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 603 ~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
.|=+..|.-++.|-+.+-.+ +.++.++..|+++|++||+|||.+|
T Consensus 62 ~~~~~~~~~~~~en~~Lk~~-l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 62 LEFLKSLKDLALENEELKKE-LAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666 4458889999999999999999886
No 445
>PF15294 Leu_zip: Leucine zipper
Probab=90.76 E-value=1.4 Score=45.94 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 006360 630 LMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 630 l~~e~~~lr~e~~~lr~~ 647 (648)
|.+||.+|++||+.||..
T Consensus 130 l~kEi~rLq~EN~kLk~r 147 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKER 147 (278)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999999999975
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=90.45 E-value=15 Score=41.50 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCEEEEEECCC-----cEEEEECCCCceeEEEeCCC-CCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEe
Q 006360 6 DEHLASISLSG-----DLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWL 77 (648)
Q Consensus 6 G~~Lasgs~DG-----~V~IwDl~sg~~i~~l~~~~-~~~V~~Vafspdg~~lLaSgs~D--g~V~IWDl~t~~~~v~~l 77 (648)
+..+++||.++ .+..||..+++... +..-. ...-.+++ .-++. +.+.|+.+ ..+..||...... ..+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v-~~~~~-iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV-PANNK-LYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE-EECCE-EEEECCcCCCCceEEEECCCCeE--EEC
Confidence 34456676543 47778876654322 11111 11111122 22444 77777754 3578888765432 222
Q ss_pred ccCCCCe--EEEEEccCCCEEEEEeCCC---eEEEEeCCCCceeeEeeCCCC--eEEEEEeCCCCEEEEEEcCCeEEEEE
Q 006360 78 KQHSAPT--AGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAP--FSSLAFIDDDWILTAGTSNGRVVFYD 150 (648)
Q Consensus 78 ~~H~~~V--~slafsPdg~~LaSgs~Dg---~I~IWDl~tgk~v~~~~h~~~--I~slafsPdG~~Lasgs~DG~V~IWD 150 (648)
..-.... .+++ .-++++.+.||.++ .+..||.++.+-...-....+ -.+++ .-+|.+.+.| |.+.+||
T Consensus 347 ~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 347 PSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEec
Confidence 1111111 1222 22677888887654 477889877653322111111 11222 2355566666 4578899
Q ss_pred CCCC
Q 006360 151 IRGK 154 (648)
Q Consensus 151 l~s~ 154 (648)
..+.
T Consensus 422 p~~~ 425 (480)
T PHA02790 422 ESSN 425 (480)
T ss_pred CCCC
Confidence 8764
No 447
>PLN02153 epithiospecifier protein
Probab=90.34 E-value=19 Score=38.60 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=50.5
Q ss_pred eEEEEEeCC-----CeEEEEECCCCCceeEEecc------CCCCeEEEEEccCCCEEEEEeCC-----------CeEEEE
Q 006360 51 HLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQ------HSAPTAGISFSSDDKIIASVGLD-----------KKLYTY 108 (648)
Q Consensus 51 ~lLaSgs~D-----g~V~IWDl~t~~~~v~~l~~------H~~~V~slafsPdg~~LaSgs~D-----------g~I~IW 108 (648)
.+++.|+.+ ..+.+||..+..- ..+.. ........+..-++++++.|+.+ ..|.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEW--TFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEE--EEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 377777653 3578899876542 22211 01111111222356777777754 247788
Q ss_pred eCCCCceeeEeeC----CCCe-EEEEEeCCCCEEEEEEcC-------------CeEEEEECCCC
Q 006360 109 DPGSRRPSSCITY----EAPF-SSLAFIDDDWILTAGTSN-------------GRVVFYDIRGK 154 (648)
Q Consensus 109 Dl~tgk~v~~~~h----~~~I-~slafsPdG~~Lasgs~D-------------G~V~IWDl~s~ 154 (648)
|..+.+-...-.. .... .+++. -++++++.|+.+ ..|.+||+.+.
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence 9887653322111 1111 11222 255666655432 35888998865
No 448
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.33 E-value=2.8 Score=41.81 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH------HhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 006360 572 SNFTLQLFQRTLEETLDSFQKSIHE------DMRNLHIEILRQFHMQETQMSNV---MSSILENQAELMKEIKSLRKENH 642 (648)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lh~~~~r~~~~~~~e~~~~---~~~~~~~~~~l~~e~~~lr~e~~ 642 (648)
-.+..+|++.-|+..|-----.+-+ ||+-+-.|+=-.|...+.|-..+ +++..++.+++++++|+|+.||.
T Consensus 101 EhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 101 EHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678887777755332222223 66666666655577666654444 45566667778888888998888
Q ss_pred HHH
Q 006360 643 QLR 645 (648)
Q Consensus 643 ~lr 645 (648)
||-
T Consensus 181 ~Le 183 (290)
T COG4026 181 RLE 183 (290)
T ss_pred HHH
Confidence 874
No 449
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.06 E-value=13 Score=45.78 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=97.7
Q ss_pred CCCcEEEEECCCCceeEEEeCCCCCcEEEEEEcc-------CC-CeEEEEEe-----C----CCeEEEEECC-----CCC
Q 006360 14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-------NS-RHLLVTAG-----D----DGTLHLWDTT-----GRS 71 (648)
Q Consensus 14 ~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Vafsp-------dg-~~lLaSgs-----~----Dg~V~IWDl~-----t~~ 71 (648)
..+.|.+.+..+++.+..+.-...+.+.+++... .+ +-+|+.|. . -|.++|||+- .++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3445667776677666655544455555555421 11 23566553 2 3789999982 121
Q ss_pred ----ce--eEEeccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeC-CCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcCC
Q 006360 72 ----PK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG 144 (648)
Q Consensus 72 ----~~--v~~l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl-~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~DG 144 (648)
.+ ....+..++.|..+|=- +|+++.+-+ .+|.+|++ +....+-+--..-++.-....--+++|+.|..-.
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~G--qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQG--QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEe-ccEEEEccC--cEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhh
Confidence 11 22334566777776533 565544333 47999999 4444332211222333333333466788887767
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 145 ~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
.|.+.-.......+..+......-.++++.|--|| ....++.+..|+.|.++--
T Consensus 1159 sisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg----------~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1159 SISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDG----------SNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred ceEEEEEccCceEEEEeecCCchhhceeeeeEEcC----------CeeEEEEEcCCCcEEEEEe
Confidence 77776665543222333322223346677765543 3445566667888887733
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=11 Score=37.84 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=58.9
Q ss_pred CCCEEEEEECC--CcEEEEECCCCceeEEEeCCC----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 006360 5 KDEHLASISLS--GDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (648)
Q Consensus 5 dG~~Lasgs~D--G~V~IwDl~sg~~i~~l~~~~----~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~ 78 (648)
+|.++.+.+.- ..|++||+.+|+.+....-.. ++.++. -+..+..-.-.+|...+||.++-++.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~-- 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRF-- 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccc--
Confidence 34455555443 369999999898877655321 122221 23434444567888899998776542211
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCc
Q 006360 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR 114 (648)
Q Consensus 79 ~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk 114 (648)
...+.=+.++. |++.|+.+....+++.-|.++..
T Consensus 128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ccCCcceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence 12233345543 56667766666678887876644
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.01 E-value=18 Score=40.06 Aligned_cols=112 Identities=12% Similarity=0.123 Sum_probs=64.4
Q ss_pred EeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc----eeEEecc--CCCCeEEEEEccCCCEEEEEeCCCeE
Q 006360 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP----KVSWLKQ--HSAPTAGISFSSDDKIIASVGLDKKL 105 (648)
Q Consensus 32 l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~----~v~~l~~--H~~~V~slafsPdg~~LaSgs~Dg~I 105 (648)
+.......+..+.|.+++. +++ ++.+|.+.. ....+.. ....... ....++++.|.+++.. +.++.+|.+
T Consensus 275 ~~~~~~~~l~~v~~~~dg~-l~l-~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v 350 (398)
T PLN00033 275 HNRASARRIQNMGWRADGG-LWL-LTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGIL 350 (398)
T ss_pred ecCCCccceeeeeEcCCCC-EEE-EeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcE
Confidence 3333456678889998887 444 456677654 3333221 1122111 1234888999876664 556667766
Q ss_pred EEEeCCCCceeeEe----eCCCCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 006360 106 YTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (648)
Q Consensus 106 ~IWDl~tgk~v~~~----~h~~~I~slafsPdG~~Lasgs~DG~V~IW 149 (648)
.... ..|+.-... .....++.+.|.++++.+++ +.+|.|.-|
T Consensus 351 ~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 351 LRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred EEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 5553 445543332 23456889999877665554 467776655
No 452
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.97 E-value=3.1 Score=42.99 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 577 QLFQRTLEETLDSFQKSIHEDMRNLHI----------------------EILRQFHMQETQMSNVMSSILENQAELMKEI 634 (648)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~lh~----------------------~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~ 634 (648)
|-+.---+|-||++-+.++.++..||- +.|+|=...-.-|-.-|..+.+..++|.+||
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555442 2334444334456666778888889999999
Q ss_pred HHHHHHHHHHHh
Q 006360 635 KSLRKENHQLRQ 646 (648)
Q Consensus 635 ~~lr~e~~~lr~ 646 (648)
..||.|+++||.
T Consensus 210 ~~L~~eV~~L~~ 221 (258)
T PF15397_consen 210 PQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 453
>PRK14127 cell division protein GpsB; Provisional
Probab=89.80 E-value=0.65 Score=41.68 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 615 QMSNVMSSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 615 e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
|....|+++-++.+.|.+||++|++||.+|+.
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~ 58 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKA 58 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555666666666655554
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.70 E-value=31 Score=36.70 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=111.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECC------CC-ceeEEEeCC----CCCcEEEEEEccCCC-----------eEEEEEeC
Q 006360 1 MYNCKDEHLASISLSGDLILHNLA------SG-AKAAELKDP----NEQVLRVLDYSRNSR-----------HLLVTAGD 58 (648)
Q Consensus 1 AFSpdG~~Lasgs~DG~V~IwDl~------sg-~~i~~l~~~----~~~~V~~Vafspdg~-----------~lLaSgs~ 58 (648)
+|+|.+.+-++...-+...+||.. .. .++..+... .....+.+.|+.... ..++.+++
T Consensus 29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 578888777777777889999985 11 233334321 123456666764322 13567789
Q ss_pred CCeEEEEECCCCCc----eeEEec-cCCCCeE-EEEEcc--CCCEEEEEe-CCCeEEEEeCCCCceee------------
Q 006360 59 DGTLHLWDTTGRSP----KVSWLK-QHSAPTA-GISFSS--DDKIIASVG-LDKKLYTYDPGSRRPSS------------ 117 (648)
Q Consensus 59 Dg~V~IWDl~t~~~----~v~~l~-~H~~~V~-slafsP--dg~~LaSgs-~Dg~I~IWDl~tgk~v~------------ 117 (648)
||+|.-|...-... .+..+. .....|+ .+++.. .+.+|+.+. ..++|.+||-.=.+...
T Consensus 109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag 188 (336)
T TIGR03118 109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG 188 (336)
T ss_pred CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence 99999998632221 122222 1223443 455543 344554443 45688888754222110
Q ss_pred -------EeeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 006360 118 -------CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (648)
Q Consensus 118 -------~~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspdg~~Las~~~~~~ 190 (648)
.++..-.|+-..-.+++..=+.|..-|.|-+||+... .++.+...+.-..-+.|+..|- .. ..-.
T Consensus 189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa-----~F-G~~s 260 (336)
T TIGR03118 189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPE-----SF-GSLS 260 (336)
T ss_pred CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChh-----hh-CCCC
Confidence 0000111222222233333334455678999999875 3344443445556677777662 11 2235
Q ss_pred CeEEEEeeCCCeEEcCCCCCCC
Q 006360 191 ETALLGGAVGDSILMPDPLPSV 212 (648)
Q Consensus 191 ~~~lvs~s~D~~IkvWDlr~~~ 212 (648)
+.+|+..=.|++|..||...-.
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 6677877779999999986433
No 455
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.52 E-value=1.9 Score=43.65 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=48.5
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCceeeEe---------------eCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 89 FSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 89 fsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~---------------~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
+..+++++++.+.+|.+++||+.+++++..- .....|..+.++.+|.-|++- .+|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 3346889999999999999999988754322 133567888888888766654 457889998876
Q ss_pred C
Q 006360 154 K 154 (648)
Q Consensus 154 ~ 154 (648)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 5
No 456
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.31 E-value=0.51 Score=52.37 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=35.4
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 592 KSIHEDMRNLHIEILRQFHMQETQMSNVMS-----------SILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 592 ~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~-----------~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
+++|.++.. |++|=..|+.|-..|.+ .+..+..+|.+|.++|++|.+||+.+|
T Consensus 69 k~~r~~~~~----l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 69 KELRKRLAK----LISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654 45666666666666643 344456788888999999988887653
No 457
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.04 E-value=15 Score=37.64 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=79.7
Q ss_pred CcEEEEEEccCCCeEEEEEeC--------CCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEE-EeCCCeEEEE
Q 006360 38 QVLRVLDYSRNSRHLLVTAGD--------DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIAS-VGLDKKLYTY 108 (648)
Q Consensus 38 ~~V~~Vafspdg~~lLaSgs~--------Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaS-gs~Dg~I~IW 108 (648)
...++-..+|+|+++.-+-++ .|.++.|-....- ..+...-..-+.++|+.+.+.++. -+.+-.|.-|
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc---eeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 344556678999842222222 2445555443322 222233344578899987776654 4556678778
Q ss_pred e--CCCCcee-----eEeeC----C-CCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 006360 109 D--PGSRRPS-----SCITY----E-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176 (648)
Q Consensus 109 D--l~tgk~v-----~~~~h----~-~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafs 176 (648)
| ..+|... .-+.. + .....++...+|++.++.-..++|..+|+.+++ .+..+.. ....|+++||-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK-~L~eikl--Pt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK-ILLEIKL--PTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc-EEEEEEc--CCCceEEEEec
Confidence 7 5555432 11211 1 122355667788888888889999999999985 3444443 37789999985
No 458
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.87 E-value=1.9 Score=43.07 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 614 TQMSNVMSSILENQAELMKEIKSLRKENHQLR 645 (648)
Q Consensus 614 ~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr 645 (648)
|+|....+++.+++.++.+|+..|++||++|-
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele 162 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELE 162 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999999999999998874
No 459
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.72 E-value=40 Score=40.64 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=85.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEEeCCCCCcEE-------------EEEEcc--CCCeEEEEEeC----------CC
Q 006360 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-------------VLDYSR--NSRHLLVTAGD----------DG 60 (648)
Q Consensus 6 G~~Lasgs~DG~V~IwDl~sg~~i~~l~~~~~~~V~-------------~Vafsp--dg~~lLaSgs~----------Dg 60 (648)
+.+|+.++.|+.|+-.|.++|+.+..+.. ...|. .+.-.| .+. .++.|+. +|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCc
Confidence 34788888999999999999999877642 11110 000011 122 4555532 68
Q ss_pred eEEEEECCCCCceeEEeccC--------CC--------Ce-EEEEEccCCCEEEEEe------------------CCCeE
Q 006360 61 TLHLWDTTGRSPKVSWLKQH--------SA--------PT-AGISFSSDDKIIASVG------------------LDKKL 105 (648)
Q Consensus 61 ~V~IWDl~t~~~~v~~l~~H--------~~--------~V-~slafsPdg~~LaSgs------------------~Dg~I 105 (648)
.|+-+|..+++..-..-..+ .+ .+ ...++.++..+++.+. ..+.|
T Consensus 337 ~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 89999999988543322110 00 11 2234555444444422 12367
Q ss_pred EEEeCCCCceeeEee---CCC-------CeEEEEEeC-CCC---EEEEEEcCCeEEEEECCCCC
Q 006360 106 YTYDPGSRRPSSCIT---YEA-------PFSSLAFID-DDW---ILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 106 ~IWDl~tgk~v~~~~---h~~-------~I~slafsP-dG~---~Lasgs~DG~V~IWDl~s~~ 155 (648)
.-.|.++|+..-.+. |+- ...-+.+.. +|+ .|+.++.+|.++++|.++++
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 777888888765443 211 111122222 553 78889999999999999884
No 460
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.69 E-value=10 Score=44.83 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=69.7
Q ss_pred CeEEEEEeCCCeEEEEECCC-------C----Cc---e----eEEeccCCCCeEEEEEc--cCCCEEEEEeCCCeEEEEe
Q 006360 50 RHLLVTAGDDGTLHLWDTTG-------R----SP---K----VSWLKQHSAPTAGISFS--SDDKIIASVGLDKKLYTYD 109 (648)
Q Consensus 50 ~~lLaSgs~Dg~V~IWDl~t-------~----~~---~----v~~l~~H~~~V~slafs--Pdg~~LaSgs~Dg~I~IWD 109 (648)
..+|+.|.+||.|.+|.++. . .. . -.....-...+++++++ ...++||++++...|.+|-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 34888999999999996621 0 00 0 00111233468999998 7888899888888777765
Q ss_pred CCC--Cce--eeEeeCCCCeEEEEEeCCC---C---EEEEEEcCCeEEEEECC
Q 006360 110 PGS--RRP--SSCITYEAPFSSLAFIDDD---W---ILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 110 l~t--gk~--v~~~~h~~~I~slafsPdG---~---~Lasgs~DG~V~IWDl~ 152 (648)
... .+. .....+...|-+|+|-++. . +|++++-.|.|.+|++.
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 433 221 1233467788999998742 2 78888889999999883
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=4.3 Score=50.03 Aligned_cols=139 Identities=21% Similarity=0.320 Sum_probs=82.4
Q ss_pred EECCCcEEEEECCCCceeEEEeCCCCCcEEEEE--------EccCCCeEEEEEeCCCeEEEEECC--CCCceeEEecc--
Q 006360 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLD--------YSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSWLKQ-- 79 (648)
Q Consensus 12 gs~DG~V~IwDl~sg~~i~~l~~~~~~~V~~Va--------fspdg~~lLaSgs~Dg~V~IWDl~--t~~~~v~~l~~-- 79 (648)
.+.|+.+++|+.+++.....+.+- ...|..|. |.+.=+++|+.+.- -.|.|+-+. ........+..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~-shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGL-SHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccch-hhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccce
Confidence 456889999999987766666652 22232232 33444555555433 556666542 11111112222
Q ss_pred ----CCCCeEEEEEccCCCEEEEEeCCCeEE--EEeCCCC---c-ee-----------------eEe-eCCCCeEEEEEe
Q 006360 80 ----HSAPTAGISFSSDDKIIASVGLDKKLY--TYDPGSR---R-PS-----------------SCI-TYEAPFSSLAFI 131 (648)
Q Consensus 80 ----H~~~V~slafsPdg~~LaSgs~Dg~I~--IWDl~tg---k-~v-----------------~~~-~h~~~I~slafs 131 (648)
....|.|+....+|+.+++| .||.|+ +|....+ + |. ... .+..+|..+...
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 24568888866677766655 455333 2222221 1 11 111 246789999998
Q ss_pred CCCCEEEEEEcCCeEEEEECCC
Q 006360 132 DDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 132 PdG~~Lasgs~DG~V~IWDl~s 153 (648)
..-+++++-++.|.|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999986
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.58 E-value=12 Score=34.91 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=68.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc--------eeEEEeCCCCCcEEEEEEcc----CCCeEEEEEeCCCeEEEEECCC
Q 006360 2 YNCKDEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSR----NSRHLLVTAGDDGTLHLWDTTG 69 (648)
Q Consensus 2 FSpdG~~Lasgs~DG~V~IwDl~sg~--------~i~~l~~~~~~~V~~Vafsp----dg~~lLaSgs~Dg~V~IWDl~t 69 (648)
|......|+.+..-|+|.|++..... .+..+. -...|++++-.+ ++...|+.|+. ..+..||+..
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 33444578888899999999875332 334444 245666665433 23336666655 7799999987
Q ss_pred CCceeEEeccCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEeCCCCcee
Q 006360 70 RSPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPS 116 (648)
Q Consensus 70 ~~~~v~~l~~H~~~V~slafsP---dg~~LaSgs~Dg~I~IWDl~tgk~v 116 (648)
... ...+.-.+.|+++.+-. ...-++.++.+..|.-||....+..
T Consensus 83 N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch--hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 763 24455567788888743 2234555555677887876655443
No 463
>PHA03098 kelch-like protein; Provisional
Probab=88.53 E-value=5.9 Score=45.29 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=70.4
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEEeC-CCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCc
Q 006360 5 KDEHLASISLS-----GDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSP 72 (648)
Q Consensus 5 dG~~Lasgs~D-----G~V~IwDl~sg~~i~~l~~-~~~~~V~~Vafspdg~~lLaSgs~D------g~V~IWDl~t~~~ 72 (648)
++..++.||.+ ..+..||..+.+-.. ... .....-.+++. -+++ +++.|+.+ ..+..||..+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~lp~~r~~~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE-EPPLIFPRYNPCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceee-CCCcCcCCccceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCee
Confidence 45566677765 247778876554221 111 01111111222 2344 67777632 4588999876542
Q ss_pred eeEEeccCC--CCeEEEEEccCCCEEEEEeCCC--------eEEEEeCCCCceeeEe--eCC-CCeEEEEEeCCCCEEEE
Q 006360 73 KVSWLKQHS--APTAGISFSSDDKIIASVGLDK--------KLYTYDPGSRRPSSCI--TYE-APFSSLAFIDDDWILTA 139 (648)
Q Consensus 73 ~v~~l~~H~--~~V~slafsPdg~~LaSgs~Dg--------~I~IWDl~tgk~v~~~--~h~-~~I~slafsPdG~~Las 139 (648)
..+.... ..-.+++. -++++++.|+.+. .+.+||..+++-...- ... .....+.+ ++.+++.
T Consensus 419 --~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 419 --SKGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV 493 (534)
T ss_pred --eecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE
Confidence 1111111 01112222 2566667776432 3889999877643322 111 11122222 5667777
Q ss_pred EEcC-----CeEEEEECCCC
Q 006360 140 GTSN-----GRVVFYDIRGK 154 (648)
Q Consensus 140 gs~D-----G~V~IWDl~s~ 154 (648)
|+.+ ..|.+||..+.
T Consensus 494 GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcCCcccceeEEEeCCCC
Confidence 7654 46888888765
No 464
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.38 E-value=14 Score=44.13 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=48.4
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEECC----------CCCceeE--E--------eccCCCCeEEEEEccC---CCE
Q 006360 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----------GRSPKVS--W--------LKQHSAPTAGISFSSD---DKI 95 (648)
Q Consensus 39 ~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~----------t~~~~v~--~--------l~~H~~~V~slafsPd---g~~ 95 (648)
.|..|.++++|. +++..|..|. .|-.+. .+...+. . ...+...|..+.|+|. +.+
T Consensus 86 ~v~~i~~n~~g~-~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGS-LLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCC-EEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 477788999998 5555555453 333331 1111111 1 1134467899999994 689
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 006360 96 IASVGLDKKLYTYDPGSR 113 (648)
Q Consensus 96 LaSgs~Dg~I~IWDl~tg 113 (648)
|+.-..|++|++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 465
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.34 E-value=8 Score=31.83 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 580 QRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
-..|++.||.+-+.+ ++.--++..|++=+ .+-++++=..+. +..+|++||+.||+||+.+|.
T Consensus 7 ~~~Lr~rLd~~~rk~--~~~~~~~k~L~~ER--d~~~~~l~~a~~-e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 7 IATLRNRLDSLTRKN--SVHEIENKRLRRER--DSAERQLGDAYE-ENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 345666666554332 23334444555422 112233333433 478899999999999988874
No 466
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=88.03 E-value=4 Score=40.88 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Q 006360 585 ETLDSFQKSIHEDM--RNLHIEILRQFHMQETQMSNVMSSILENQAELM-------KEIKSLRKENHQLRQL 647 (648)
Q Consensus 585 ~~~~~~~~~~~~~~--~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~-------~e~~~lr~e~~~lr~~ 647 (648)
+.|.+|++++--=+ .-=|||=|||||-.-|||+.-..+..+++.++. ||-..||...+.|||.
T Consensus 50 ~~leey~~em~~lL~ekm~Hveelr~iHadiN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR~~ 121 (286)
T KOG4451|consen 50 ENLEEYELEMGVLLLEKMGHVEELREIHADINEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADELRQI 121 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 35555555432111 112999999999999999999999988887765 5677778888888864
No 467
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.99 E-value=35 Score=41.16 Aligned_cols=140 Identities=10% Similarity=0.158 Sum_probs=84.8
Q ss_pred CCCcEEEEEEc---c--CCC-eEEEEEeCCCeEEEEECCCC------C--------ceeEEecc---CCCCeEEEEEcc-
Q 006360 36 NEQVLRVLDYS---R--NSR-HLLVTAGDDGTLHLWDTTGR------S--------PKVSWLKQ---HSAPTAGISFSS- 91 (648)
Q Consensus 36 ~~~~V~~Vafs---p--dg~-~lLaSgs~Dg~V~IWDl~t~------~--------~~v~~l~~---H~~~V~slafsP- 91 (648)
...+|..|+|. . +.. .+|+ .-....+.|+...-. . ..+..+.. ......+|+|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 56778888887 2 111 2333 345567777772111 1 01222221 224678899999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc-----eeeEe-eCCCC----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCC
Q 006360 92 DDKIIASVGLDKKLYTYDPGSRR-----PSSCI-TYEAP----------FSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (648)
Q Consensus 92 dg~~LaSgs~Dg~I~IWDl~tgk-----~v~~~-~h~~~----------I~slafsPdG~~Lasgs~DG~V~IWDl~s~~ 155 (648)
+...||+....|...|||+.... ..... ...+. ...+.|..+-+.|++++.. .+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence 78899999999999999992111 11111 11222 2378898887778777654 58999999874
Q ss_pred CceEEEeecCCCCCeeEEEEccC
Q 006360 156 QPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 156 ~~~~~l~~~~h~~~VtsLafspd 178 (648)
.... +........|..+.-++.
T Consensus 236 ~~~~-l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 236 QTEY-LVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ccch-hccCCChhheeeEEecCC
Confidence 4221 222345577888888776
No 468
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.91 E-value=47 Score=36.85 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=50.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeC--CCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 81 ~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h--~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
.+++..++++|++++||.-..+|.+.++...-.+....+.. ......+.|+-+...++.- ...|.++....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~ 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC
Confidence 35799999999999999999999999998766666655543 3667888898664433332 34566665443
No 469
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=87.74 E-value=0.75 Score=38.39 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 619 VMSSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 619 ~~~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
|+++|.++++.|.+|++.|..|.|++++
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999876
No 470
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.59 E-value=6.8 Score=38.24 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 577 QLFQRTLEETLDSFQ--KSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 577 ~~~~~~~~~~~~~~~--~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
+.++.++.+.++.+. -.++.|+.|+--.+=..|-.++.||..+- ..+.+.|+.|+++|+.|.++||+-
T Consensus 26 ~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~---k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 26 KALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSR---KSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666555442 34577777755555555555555554322 234566777777777777777653
No 471
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.58 E-value=2.2 Score=49.75 Aligned_cols=99 Identities=22% Similarity=0.330 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhH----HhHHHHHH----HHHHHHHHHHH
Q 006360 548 GIPPAINGGMSQSLK-SPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMR----NLHIEILR----QFHMQETQMSN 618 (648)
Q Consensus 548 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~lh~~~~r----~~~~~~~e~~~ 618 (648)
+-+|+.+|.+.-.-. +.--++-..-+.||+===|||..+|-+ |+.+.+.-+ ||-|.-|+ .++.|-.|...
T Consensus 370 slLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlre-qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k 448 (861)
T PF15254_consen 370 SLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLRE-QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLK 448 (861)
T ss_pred HhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH-HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 678888887653222 211122223444543223566666665 444444333 55555554 46677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006360 619 VMSSILENQAELMKEIKSLRKENHQLRQL 647 (648)
Q Consensus 619 ~~~~~~~~~~~l~~e~~~lr~e~~~lr~~ 647 (648)
-.+.++.+++||.|.|+.+|+||++||.+
T Consensus 449 ~~e~lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 449 SQELLQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999976
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.37 E-value=21 Score=33.35 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=71.5
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCC--------CceeeEeeCCCCeEEEEEeC-----CCCEEEEEEcCCeEEEEECC
Q 006360 86 GISFSSDDKIIASVGLDKKLYTYDPGS--------RRPSSCITYEAPFSSLAFID-----DDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 86 slafsPdg~~LaSgs~Dg~I~IWDl~t--------gk~v~~~~h~~~I~slafsP-----dG~~Lasgs~DG~V~IWDl~ 152 (648)
.-.|...+..|++++.-++|.|++... ...+..+.....|++++--+ +...|+.|+.. .|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 345666677889999999999998763 23556777788888886544 34567777664 59999998
Q ss_pred CCCCceEEEeecCCCCCeeEEEEcc----CCCeEEEeccCCCCeEEEEeeCCCeEEcCCC
Q 006360 153 GKPQPLTVLRACSSSEAVSSLCWQR----AKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (648)
Q Consensus 153 s~~~~~~~l~~~~h~~~VtsLafsp----dg~~Las~~~~~~~~~lvs~s~D~~IkvWDl 208 (648)
.....+.. .-.+.|.++.+-. +.++++.+ +...+.+-..+|.=.+|-+
T Consensus 82 ~N~d~Fyk----e~~DGvn~i~~g~~~~~~~~l~ivG----Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYK----EVPDGVNAIVIGKLGDIPSPLVIVG----GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhh----hCccceeEEEEEecCCCCCcEEEEC----ceEEEEEeCCCCcEEEEEe
Confidence 76432221 2335677776632 23444444 2233333344666666643
No 473
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=87.12 E-value=0.95 Score=50.39 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 606 LRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 606 ~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
.-|=|+-+.| .|..++.++.+|.+|+++||+||--|||.|
T Consensus 293 A~~SRkKKKE---y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 293 ACQSRKKKKE---YMLGLEARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555554 566667789999999999999999999874
No 474
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.69 E-value=2.6 Score=31.40 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.2
Q ss_pred CCeEEEEEeCCC---CEEEEEEcCCeEEEEECCCC
Q 006360 123 APFSSLAFIDDD---WILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 123 ~~I~slafsPdG---~~Lasgs~DG~V~IWDl~s~ 154 (648)
+.|.++.|+|++ .+|+..-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47888878899999999953
No 475
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=86.58 E-value=48 Score=35.48 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=66.9
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEeeCCCCeEEEEEeCCCCEEEEEEcC--------------------C
Q 006360 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------------------G 144 (648)
Q Consensus 85 ~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~h~~~I~slafsPdG~~Lasgs~D--------------------G 144 (648)
.+..|+ ++++.++-+..|.|..+|.++|+...+....+....++|. |.++++|-.. .
T Consensus 206 hSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C 282 (335)
T TIGR03032 206 HSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC 282 (335)
T ss_pred cCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence 445565 7888888999999999999988877666677888999997 7788776431 2
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 006360 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (648)
Q Consensus 145 ~V~IWDl~s~~~~~~~l~~~~h~~~VtsLafspd 178 (648)
-|.|.|++++ ..+..++..+.-..+.++++-|.
T Consensus 283 Gv~vidl~tG-~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 283 GVAVIDLNSG-DVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred cEEEEECCCC-CEEEEEEeCCceeEEEEEEEecC
Confidence 3777888887 44566665566667777777775
No 476
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.57 E-value=6.2 Score=32.18 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 006360 634 IKSLRKENHQLR 645 (648)
Q Consensus 634 ~~~lr~e~~~lr 645 (648)
.++|++||+||.
T Consensus 48 reaL~~eneqlk 59 (79)
T COG3074 48 REALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHH
Confidence 335555555553
No 477
>smart00338 BRLZ basic region leucin zipper.
Probab=86.15 E-value=1.8 Score=34.89 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 616 MSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 616 ~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
|..-.+.+.....+|.++|..|+.||+.|++.|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455557778888888888888888764
No 478
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.86 E-value=53 Score=40.20 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=88.8
Q ss_pred cEEEEECCCCceeEEEeCCC---CCcEEEEEEccCCCe-EEEEEe-----------CCCeEEEEECCCCCceeEEeccC-
Q 006360 17 DLILHNLASGAKAAELKDPN---EQVLRVLDYSRNSRH-LLVTAG-----------DDGTLHLWDTTGRSPKVSWLKQH- 80 (648)
Q Consensus 17 ~V~IwDl~sg~~i~~l~~~~---~~~V~~Vafspdg~~-lLaSgs-----------~Dg~V~IWDl~t~~~~v~~l~~H- 80 (648)
.|+++|..+++.++.+.-.. .-.+..+.|+..... +++.|. .+|.++.|++-.....+..+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 48899988888776665322 234555667654443 333332 24557888873322223333222
Q ss_pred -CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee---CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCCCC
Q 006360 81 -SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 81 -~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~---h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~~~ 156 (648)
...|. +..|-..++++ +....+++||+...+.++... ....|..+++ .+..|++|...-.|.++-.+....
T Consensus 934 ~~~~v~--Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred CCccce--EEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCC
Confidence 23343 45564444443 445689999998877665442 2456777776 466888888777777766655444
Q ss_pred ceEEEeecCCCCCeeEEEEcc
Q 006360 157 PLTVLRACSSSEAVSSLCWQR 177 (648)
Q Consensus 157 ~~~~l~~~~h~~~VtsLafsp 177 (648)
.+.++....-...|+++.+-.
T Consensus 1009 ~l~~fadD~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELLD 1029 (1205)
T ss_pred eEEEEeCCCccceeeEEEEec
Confidence 444444333344566655543
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.79 E-value=24 Score=35.64 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=77.1
Q ss_pred CCC-CEEEEEECCCcEEEEECC--CCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEE---ECC--C
Q 006360 4 CKD-EHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLW---DTT--G 69 (648)
Q Consensus 4 pdG-~~Lasgs~DG~V~IwDl~--sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~D------g~V~IW---Dl~--t 69 (648)
+.| +.|+.+...+.|.+|++. ..+.+..+.. -+.|..+.++..|+ +|+|--.+ ..+++| +.. .
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 335 556555666789999987 3445566653 36677899999998 67764322 256765 221 1
Q ss_pred CCceeEEecc---------------------CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCce----eeEee---
Q 006360 70 RSPKVSWLKQ---------------------HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRP----SSCIT--- 120 (648)
Q Consensus 70 ~~~~v~~l~~---------------------H~~~V~slafsP-dg~~LaSgs~Dg~I~IWDl~tgk~----v~~~~--- 120 (648)
.......+-+ -...+.|++..| .|++++ |+ ++++.+|.+..... +..+.
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~ 179 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFER 179 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechh
Confidence 1111111222 133567888888 666554 33 45788887754322 11111
Q ss_pred ----C--CCCeEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 006360 121 ----Y--EAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (648)
Q Consensus 121 ----h--~~~I~slafsPdG~~Lasgs~DG~V~IWDl 151 (648)
| .-....+++. +.++|..+. -.++++.+
T Consensus 180 ~l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred hhhheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1 1123455554 457776654 34666544
No 480
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.76 E-value=95 Score=37.89 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=61.3
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccC--C-C---EEEEEeCCCeEEEEeC-CCCceeeEe--e--
Q 006360 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD--D-K---IIASVGLDKKLYTYDP-GSRRPSSCI--T-- 120 (648)
Q Consensus 52 lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPd--g-~---~LaSgs~Dg~I~IWDl-~tgk~v~~~--~-- 120 (648)
.++.++.++.+...++.........-+.....|.|++++|- + + +++.|..+..+.+.-. .+...+... .
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 46666666777766775554222222344568999999982 2 3 6888887776554432 222222211 1
Q ss_pred -CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 006360 121 -YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (648)
Q Consensus 121 -h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s 153 (648)
-...|.-.+|--|..+|.++..||.+..|-+..
T Consensus 581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred ccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 122344455555788999999999988776654
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.73 E-value=54 Score=35.04 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCceeEEecc--CC-CCeEEEEEccCCCEEEEEeCC
Q 006360 60 GTLHLWDTTGRSPKVSWLKQ--HS-APTAGISFSSDDKIIASVGLD 102 (648)
Q Consensus 60 g~V~IWDl~t~~~~v~~l~~--H~-~~V~slafsPdg~~LaSgs~D 102 (648)
..|.+||..+.+- ..+.. .. ..-.+++ .-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W--~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQW--RNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCce--eECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 4688999876652 22211 11 1112222 2367777777754
No 482
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=85.52 E-value=4.6 Score=38.94 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 579 FQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
=||-+=+.|+.|+-.+=.-||-| ++|=|..+.++=.|...-..|..=|.+--.|+.+||+++++||..|
T Consensus 78 ERR~~~~~l~~y~~~~P~~vRPL-~QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL 146 (179)
T PF13942_consen 78 ERRQMVDRLNSYSLQFPASVRPL-LQLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQL 146 (179)
T ss_pred HHHHHHHHHHHhhhhcCHHHhHH-HHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46677788999999999999987 6888888888888888888888888888899999999999998754
No 483
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=85.51 E-value=2.8 Score=44.69 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=43.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 593 SIHEDMRNLHIEILRQFHMQETQMS--------NVMSSILENQAELMKEIKSLRKENHQLR 645 (648)
Q Consensus 593 ~~~~~~~~lh~~~~r~~~~~~~e~~--------~~~~~~~~~~~~l~~e~~~lr~e~~~lr 645 (648)
.++-++.|-++++-+++..+-++.. +-|+++.+.+.+|++||++|++|..+|-
T Consensus 256 k~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 256 KVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999888777764 3458888999999999999999987763
No 484
>PRK13684 Ycf48-like protein; Provisional
Probab=85.47 E-value=26 Score=37.71 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=77.3
Q ss_pred cCCCCEEEEEECCCcEEEE-ECCCCceeEEEeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc--
Q 006360 3 NCKDEHLASISLSGDLILH-NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-- 79 (648)
Q Consensus 3 SpdG~~Lasgs~DG~V~Iw-Dl~sg~~i~~l~~~~~~~V~~Vafspdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~l~~-- 79 (648)
.+++.+++++ ..|.++.- | ..++....+.......++++.+.++++ +++. +..|.+++=..+.+.. .+....
T Consensus 181 ~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s-W~~~~~~~ 255 (334)
T PRK13684 181 SPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES-WSKPIIPE 255 (334)
T ss_pred CCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc-cccccCCc
Confidence 4555555444 45554432 2 223333334444556788899999887 4444 5667765322333321 111111
Q ss_pred --CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee----CCCCeEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 006360 80 --HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (648)
Q Consensus 80 --H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~----h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~ 152 (648)
....+..+.|.+++..+ .++.+|.|.. ....++.-.... ....+..+.|..++..++ .+..|.|..|+-.
T Consensus 256 ~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred cccccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence 12347888999877654 4556775543 444455433331 223577788876666555 5567888777643
No 485
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=85.14 E-value=0.27 Score=48.78 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 615 QMSNVMSSILENQAELMKEIKSLRKENHQL 644 (648)
Q Consensus 615 e~~~~~~~~~~~~~~l~~e~~~lr~e~~~l 644 (648)
.|+.+++-++.+++.|++||++|+.||.||
T Consensus 133 dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 133 DLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666666666655
No 486
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.08 E-value=1.9 Score=33.42 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006360 621 SSILENQAELMKEIKSLRKENHQLRQ 646 (648)
Q Consensus 621 ~~~~~~~~~l~~e~~~lr~e~~~lr~ 646 (648)
++....+++|..||+.||.|.+.+|-
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566788999999999999998874
No 487
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.04 E-value=8.2 Score=42.90 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=36.7
Q ss_pred eccCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCceeeEee
Q 006360 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120 (648)
Q Consensus 77 l~~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~tgk~v~~~~ 120 (648)
+......+.+|+.+|++++.++...-|.|.++|+..+..++.++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 34445568899999999999998888999999999988877764
No 488
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.01 E-value=6.3 Score=33.10 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 006360 625 ENQAELMKEIKSLRKE 640 (648)
Q Consensus 625 ~~~~~l~~e~~~lr~e 640 (648)
....+|+.||++||+|
T Consensus 46 ~~r~~L~~en~qLk~E 61 (79)
T PRK15422 46 HQREELERENNHLKEQ 61 (79)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333444444444444
No 489
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.40 E-value=5.6 Score=39.95 Aligned_cols=12 Identities=0% Similarity=-0.058 Sum_probs=4.7
Q ss_pred CchhHHHHHHHH
Q 006360 571 GSNFTLQLFQRT 582 (648)
Q Consensus 571 ~~~~~~~~~~~~ 582 (648)
+...++.-+++=
T Consensus 90 ~~~~rlp~le~e 101 (206)
T PRK10884 90 SLRTRVPDLENQ 101 (206)
T ss_pred cHHHHHHHHHHH
Confidence 333444334433
No 490
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=84.12 E-value=10 Score=39.28 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=56.3
Q ss_pred CCCCCCCCC-CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 554 NGGMSQSLK-SPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMK 632 (648)
Q Consensus 554 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~ 632 (648)
|-|+.||.| -++.+- |---.+.+-|+.-|+|....+|. =-.||..|--+|-||=.-|=+|==-=.+.=+. +.|-+|
T Consensus 48 NHGikPP~PEQYLTPL-QQKEV~iRHLkakLkes~~~l~d-RetEI~eLksQL~RMrEDWIEEECHRVEAQLA-LKEARk 124 (305)
T PF15290_consen 48 NHGIKPPNPEQYLTPL-QQKEVCIRHLKAKLKESENRLHD-RETEIDELKSQLARMREDWIEEECHRVEAQLA-LKEARK 124 (305)
T ss_pred CCCCCCCCHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 556666554 222222 22456667788888888777766 34578888888888776664432222232222 678888
Q ss_pred HHHHHHHHHHHHHhh
Q 006360 633 EIKSLRKENHQLRQL 647 (648)
Q Consensus 633 e~~~lr~e~~~lr~~ 647 (648)
|||+||+=.+-.|.-
T Consensus 125 EIkQLkQvieTmrss 139 (305)
T PF15290_consen 125 EIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888877766653
No 491
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.02 E-value=12 Score=36.62 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006360 612 QETQMSNVMSSILENQAELMK 632 (648)
Q Consensus 612 ~~~e~~~~~~~~~~~~~~l~~ 632 (648)
++.|+..+-+++.++.++|..
T Consensus 85 L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333333
No 492
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.93 E-value=2.8 Score=44.27 Aligned_cols=50 Identities=20% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006360 587 LDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKE 640 (648)
Q Consensus 587 ~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e 640 (648)
+..+-+.+|.||.- +-+|....+.|...-|..|..+..++++||++||+-
T Consensus 227 ~~shI~~Lr~EV~R----LR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~ 276 (310)
T PF09755_consen 227 LSSHIRSLRQEVSR----LRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRK 276 (310)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555542 334555555555555555555444444444444443
No 493
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.83 E-value=4.2 Score=30.25 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=26.2
Q ss_pred cEEEEEEccCCC--eEEEEEeCCCeEEEEECCCC
Q 006360 39 VLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGR 70 (648)
Q Consensus 39 ~V~~Vafspdg~--~lLaSgs~Dg~V~IWDl~t~ 70 (648)
.|++++|+|... .+|+.+-.-+.|.|+|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 588999997543 58888888899999999853
No 494
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.73 E-value=7.2 Score=39.47 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=42.9
Q ss_pred ccCCCeEEEEEeCCCeEEEEECCCCCceeEE------ec-------cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 006360 46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------LK-------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112 (648)
Q Consensus 46 spdg~~lLaSgs~Dg~V~IWDl~t~~~~v~~------l~-------~H~~~V~slafsPdg~~LaSgs~Dg~I~IWDl~t 112 (648)
..++. ++++...+|.+++||+...+..+.. +. .....|..+.++.+|.-|++-+ +|..+.||..-
T Consensus 19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 34565 6777789999999999887643221 11 2345567777776666666554 35667777654
Q ss_pred Cc
Q 006360 113 RR 114 (648)
Q Consensus 113 gk 114 (648)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 495
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.53 E-value=22 Score=35.79 Aligned_cols=102 Identities=12% Similarity=0.163 Sum_probs=62.3
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEccCCCEEEEEeCCC------eEEEE-eCCC----Ccee--eE
Q 006360 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK------KLYTY-DPGS----RRPS--SC 118 (648)
Q Consensus 52 lLaSgs~Dg~V~IWDl~t~~~~v~~l~~H~~~V~slafsPdg~~LaSgs~Dg------~I~IW-Dl~t----gk~v--~~ 118 (648)
.|+.+...+.|.+|++.........-...-+.|..+.++..|++|++-=.+. .+|+| +.+. ..++ +.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 3444466788999999854444444444557899999999999999864332 45554 2211 1111 11
Q ss_pred ---------------------eeCCCCeEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 006360 119 ---------------------ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (648)
Q Consensus 119 ---------------------~~h~~~I~slafsPdG~~Lasgs~DG~V~IWDl~s~ 154 (648)
+.....+.|++-.|-..-|++|+. +.+.||.+...
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 123445678888885334555554 56999987643
No 496
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=83.47 E-value=7.7 Score=38.94 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH---HH--HHHHHH------------HHHHHHHHHHHHHHHHHH
Q 006360 582 TLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSN---VM--SSILEN------------QAELMKEIKSLRKENHQL 644 (648)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~lh~~~~r~~~~~~~e~~~---~~--~~~~~~------------~~~l~~e~~~lr~e~~~l 644 (648)
.|++.+...+....+-++-+|...|+.-.-++.|++. ++ +....+ ...|.+--..+.+||+||
T Consensus 89 ~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L 168 (206)
T PF14988_consen 89 TLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQL 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888888888888888888777622 21 111111 233555566677777777
Q ss_pred Hhh
Q 006360 645 RQL 647 (648)
Q Consensus 645 r~~ 647 (648)
|.-
T Consensus 169 ~k~ 171 (206)
T PF14988_consen 169 RKE 171 (206)
T ss_pred HHH
Confidence 754
No 497
>PLN02193 nitrile-specifier protein
Probab=83.42 E-value=81 Score=35.63 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=70.2
Q ss_pred CCEEEEEECC-----CcEEEEECCCCceeEEEeC----CCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCC
Q 006360 6 DEHLASISLS-----GDLILHNLASGAKAAELKD----PNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRS 71 (648)
Q Consensus 6 G~~Lasgs~D-----G~V~IwDl~sg~~i~~l~~----~~~~~V~~Vafspdg~~lLaSgs~Dg-----~V~IWDl~t~~ 71 (648)
+..++.|+.+ +.+.+||+.+.+-.. +.. .....-.+++. -++ .+++.|+.++ .+..||+.+..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCE
Confidence 3444556544 357888886644321 211 11111122222 233 3677776543 46788886654
Q ss_pred ceeEEecc------CCCCeEEEEEccCCCEEEEEeCC----CeEEEEeCCCCceeeEeeC-----CCCeEEEEEeCCCCE
Q 006360 72 PKVSWLKQ------HSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCITY-----EAPFSSLAFIDDDWI 136 (648)
Q Consensus 72 ~~v~~l~~------H~~~V~slafsPdg~~LaSgs~D----g~I~IWDl~tgk~v~~~~h-----~~~I~slafsPdG~~ 136 (648)
. ..+.. .... ..++. -++++++.++.+ ..|.+||+.+.+-...... .....+++ .-++++
T Consensus 306 W--~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~i 380 (470)
T PLN02193 306 W--FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHI 380 (470)
T ss_pred E--EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEE
Confidence 2 22111 0111 11222 257777777765 3689999988765433211 11111222 225667
Q ss_pred EEEEEcC--------------CeEEEEECCCC
Q 006360 137 LTAGTSN--------------GRVVFYDIRGK 154 (648)
Q Consensus 137 Lasgs~D--------------G~V~IWDl~s~ 154 (648)
++.|+.+ ..+.+||+.+.
T Consensus 381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEECCccCCccccccCccceeccEEEEEcCcC
Confidence 7777753 24788888765
No 498
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.08 E-value=25 Score=39.80 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=51.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEe---------CCCCcee---eEee---------CCCCeEEEEEeCCC---CEEE
Q 006360 83 PTAGISFSSDDKIIASVGLDKKLYTYD---------PGSRRPS---SCIT---------YEAPFSSLAFIDDD---WILT 138 (648)
Q Consensus 83 ~V~slafsPdg~~LaSgs~Dg~I~IWD---------l~tgk~v---~~~~---------h~~~I~slafsPdG---~~La 138 (648)
.|..+..++.|..++-.+.+|.+.++= +++|+.+ ++++ ..-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 367788899999999999999655442 2345432 1121 11235678999974 6788
Q ss_pred EEEcCCeEEEEECCCCCC
Q 006360 139 AGTSNGRVVFYDIRGKPQ 156 (648)
Q Consensus 139 sgs~DG~V~IWDl~s~~~ 156 (648)
.-+.|..|+|||+.....
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 888999999999987643
No 499
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.92 E-value=3.2 Score=45.06 Aligned_cols=48 Identities=29% Similarity=0.323 Sum_probs=35.9
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 006360 601 LHIEILRQ-FHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 648 (648)
Q Consensus 601 lh~~~~r~-~~~~~~e~~~~~~~~~~~~~~l~~e~~~lr~e~~~lr~~~ 648 (648)
+||+.||- -.-++.+++.+--++.+++..+++|-+..|+||+||-+.|
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555442 2335566777778899999999999999999999997764
No 500
>PLN02153 epithiospecifier protein
Probab=82.63 E-value=52 Score=35.19 Aligned_cols=146 Identities=13% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEEeCC-----CCCcEEEEEEccCCCeEEEEEeCC-----------CeEE
Q 006360 5 KDEHLASISLS-----GDLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSRHLLVTAGDD-----------GTLH 63 (648)
Q Consensus 5 dG~~Lasgs~D-----G~V~IwDl~sg~~i~~l~~~-----~~~~V~~Vafspdg~~lLaSgs~D-----------g~V~ 63 (648)
+++.++.|+.+ ..+.+||+ ....-..+... ........+..-+++ +++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~-~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDT-VKNEWTFLTKLDEEGGPEARTFHSMASDENH-VYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEEC-CCCEEEEeccCCCCCCCCCceeeEEEEECCE-EEEECCccCCCccCCCcccceEE
Q ss_pred EEECCCCCceeEEeccC----CCCeEEEEEccCCCEEEEEeCC-------------CeEEEEeCCCCceeeEee----CC
Q 006360 64 LWDTTGRSPKVSWLKQH----SAPTAGISFSSDDKIIASVGLD-------------KKLYTYDPGSRRPSSCIT----YE 122 (648)
Q Consensus 64 IWDl~t~~~~v~~l~~H----~~~V~slafsPdg~~LaSgs~D-------------g~I~IWDl~tgk~v~~~~----h~ 122 (648)
+||..+.. ...+... ..........-++++++.++.+ ..|.+||+.+.+-...-. ..
T Consensus 163 ~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 163 AYNIADGK--WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EEECCCCe--EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Q ss_pred CCeEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCC
Q 006360 123 APFSSLAFIDDDWILTAGTSN--------------GRVVFYDIRGK 154 (648)
Q Consensus 123 ~~I~slafsPdG~~Lasgs~D--------------G~V~IWDl~s~ 154 (648)
......+..-++.+++.|+.. ..|+.||+.+.
T Consensus 241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Done!