BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006364
         (648 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score = 33.1 bits (74), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 159 HVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMS 202
           HV    AA A G ++ L +GKQ H +S   G G H +    L++
Sbjct: 372 HVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALIT 415


>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
           Bf1650. Northeast Structural Genomics Consortium Target
           Bfr218
          Length = 99

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 539 HGNVEMGERIADALMKMEPAGSG-SYVLMSNLYAEKGDWE 577
            G++E   +  +  ++ EP G   +Y LM N Y + GDW+
Sbjct: 13  QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQ 52


>pdb|4IR8|A Chain A, 1.85 Angstrom Crystal Structure Of Putative
           Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
 pdb|4IR8|B Chain B, 1.85 Angstrom Crystal Structure Of Putative
           Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
          Length = 347

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 359 GSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV 414
           GS + AV + EDI   H Q CH +   + L  DP+ GS+++D     GSI    R+
Sbjct: 96  GSAVRAVCSEEDI---HLQECHKNGEFI-LCWDPLDGSSIIDCNWAVGSIVSIWRI 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,441,296
Number of Sequences: 62578
Number of extensions: 815596
Number of successful extensions: 1901
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1900
Number of HSP's gapped (non-prelim): 7
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)