Query 006364
Match_columns 648
No_of_seqs 685 out of 3531
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 22:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-109 5E-114 915.8 71.9 640 1-646 128-788 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.3E-86 4.9E-91 715.3 60.6 522 120-646 84-626 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-83 2.7E-88 710.8 64.5 567 22-595 48-625 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-69 2.5E-74 585.5 53.6 464 23-492 85-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 8.9E-70 1.9E-74 587.3 48.5 496 2-521 378-907 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 2E-68 4.4E-73 576.8 59.0 512 53-596 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-32 2.9E-37 312.2 59.8 533 40-587 347-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-31 4.6E-36 302.5 59.8 517 59-590 331-867 (899)
9 PRK11447 cellulose synthase su 100.0 3.1E-23 6.7E-28 235.6 58.5 565 4-587 72-738 (1157)
10 PRK11447 cellulose synthase su 99.9 9.5E-22 2E-26 223.6 53.9 570 5-590 39-701 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1E-19 2.2E-24 197.5 53.9 547 6-584 56-735 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.8E-18 3.9E-23 187.9 56.0 526 40-588 62-705 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 7.3E-20 1.6E-24 176.1 34.7 448 95-582 51-512 (966)
14 KOG4626 O-linked N-acetylgluco 99.8 3.8E-18 8.2E-23 164.5 28.7 422 126-588 51-484 (966)
15 PRK11788 tetratricopeptide rep 99.8 2.5E-18 5.5E-23 174.6 29.5 290 266-598 46-356 (389)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-16 3.1E-21 170.3 41.1 419 125-588 129-570 (615)
17 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.4E-22 169.9 30.2 283 234-554 49-346 (389)
18 KOG4422 Uncharacterized conser 99.8 2E-15 4.4E-20 139.6 38.9 324 25-389 116-465 (625)
19 PRK15174 Vi polysaccharide exp 99.8 3.9E-16 8.4E-21 166.2 36.5 317 234-560 56-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 1.5E-15 3.3E-20 165.3 40.6 403 128-589 20-456 (765)
21 PRK15174 Vi polysaccharide exp 99.8 2.1E-15 4.6E-20 160.6 39.3 325 256-589 43-381 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.3E-14 2.8E-19 158.1 44.0 413 90-564 13-465 (765)
23 KOG2002 TPR-containing nuclear 99.8 3E-14 6.5E-19 145.3 42.5 565 10-590 146-799 (1018)
24 PRK14574 hmsH outer membrane p 99.8 7.8E-14 1.7E-18 148.9 47.7 221 337-562 267-520 (822)
25 TIGR00990 3a0801s09 mitochondr 99.8 2.5E-14 5.5E-19 153.1 41.5 422 95-561 130-577 (615)
26 KOG2002 TPR-containing nuclear 99.7 1.6E-13 3.5E-18 140.1 39.9 502 7-521 177-743 (1018)
27 PRK14574 hmsH outer membrane p 99.7 4E-13 8.7E-18 143.5 44.4 434 68-586 45-510 (822)
28 KOG4422 Uncharacterized conser 99.7 1.4E-12 3.1E-17 121.1 34.4 434 57-556 116-591 (625)
29 KOG2003 TPR repeat-containing 99.7 2.3E-13 5E-18 127.0 28.9 474 62-575 206-709 (840)
30 KOG4318 Bicoid mRNA stability 99.7 1E-12 2.2E-17 132.7 35.0 511 43-593 11-598 (1088)
31 PF13429 TPR_15: Tetratricopep 99.6 8E-15 1.7E-19 140.8 12.0 211 372-587 59-275 (280)
32 KOG4318 Bicoid mRNA stability 99.6 2.7E-12 5.9E-17 129.7 30.0 53 22-74 22-76 (1088)
33 KOG2076 RNA polymerase III tra 99.6 8.8E-11 1.9E-15 119.7 40.4 528 40-572 157-786 (895)
34 KOG2076 RNA polymerase III tra 99.6 8.4E-12 1.8E-16 127.0 32.3 328 269-600 153-523 (895)
35 KOG1126 DNA-binding cell divis 99.6 6.8E-13 1.5E-17 130.6 22.7 273 305-588 334-619 (638)
36 KOG1155 Anaphase-promoting com 99.6 7.3E-12 1.6E-16 117.8 28.1 360 189-587 159-534 (559)
37 KOG0495 HAT repeat protein [RN 99.6 1.7E-09 3.6E-14 106.4 45.0 460 98-603 412-892 (913)
38 KOG0495 HAT repeat protein [RN 99.5 1.3E-08 2.7E-13 100.4 48.3 418 167-599 384-854 (913)
39 KOG0547 Translocase of outer m 99.5 7.9E-11 1.7E-15 111.7 30.1 208 372-586 341-563 (606)
40 KOG2003 TPR repeat-containing 99.5 5.1E-11 1.1E-15 111.6 28.4 414 168-588 210-688 (840)
41 KOG1915 Cell cycle control pro 99.5 7.6E-09 1.6E-13 98.1 40.8 524 70-633 86-670 (677)
42 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.8E-15 112.4 29.1 254 327-587 250-516 (611)
43 KOG1126 DNA-binding cell divis 99.4 2.3E-11 5E-16 120.0 22.8 246 336-588 334-585 (638)
44 TIGR00540 hemY_coli hemY prote 99.4 4.9E-10 1.1E-14 113.4 32.8 282 234-554 98-398 (409)
45 PRK10747 putative protoheme IX 99.4 4.9E-10 1.1E-14 112.7 32.5 141 407-554 244-389 (398)
46 PRK10747 putative protoheme IX 99.4 1.9E-10 4E-15 115.8 28.6 276 234-520 98-387 (398)
47 KOG1155 Anaphase-promoting com 99.4 3E-09 6.6E-14 100.5 31.9 313 265-588 174-494 (559)
48 TIGR00540 hemY_coli hemY prote 99.4 1.7E-10 3.7E-15 116.7 25.5 278 301-586 95-396 (409)
49 PF13429 TPR_15: Tetratricopep 99.4 4.2E-12 9.2E-17 121.9 11.3 250 296-554 14-276 (280)
50 KOG1915 Cell cycle control pro 99.3 5.6E-09 1.2E-13 98.9 30.8 383 172-596 86-507 (677)
51 TIGR02521 type_IV_pilW type IV 99.3 2.6E-10 5.7E-15 106.8 22.4 198 390-588 29-231 (234)
52 COG2956 Predicted N-acetylgluc 99.3 8.8E-09 1.9E-13 93.0 29.9 316 225-612 40-368 (389)
53 PF13041 PPR_2: PPR repeat fam 99.3 4.1E-12 9E-17 85.0 6.7 50 421-470 1-50 (50)
54 PF13041 PPR_2: PPR repeat fam 99.3 3.8E-12 8.3E-17 85.1 6.1 50 121-171 1-50 (50)
55 KOG0547 Translocase of outer m 99.3 1.5E-08 3.2E-13 96.6 30.2 218 331-556 336-567 (606)
56 KOG2047 mRNA splicing factor [ 99.3 2.2E-06 4.7E-11 85.0 45.8 428 64-502 109-630 (835)
57 KOG1174 Anaphase-promoting com 99.3 1.2E-07 2.7E-12 88.5 34.2 305 251-562 190-507 (564)
58 COG3071 HemY Uncharacterized e 99.2 3.9E-08 8.5E-13 91.8 29.7 285 234-555 98-390 (400)
59 KOG1840 Kinesin light chain [C 99.2 1.5E-09 3.3E-14 108.5 22.1 242 291-587 200-477 (508)
60 KOG3785 Uncharacterized conser 99.2 3.7E-08 8E-13 90.0 26.9 150 407-559 338-494 (557)
61 COG3071 HemY Uncharacterized e 99.2 3.3E-08 7.1E-13 92.3 26.3 275 303-587 97-388 (400)
62 KOG4162 Predicted calmodulin-b 99.2 5.3E-07 1.1E-11 91.2 35.8 433 85-588 316-782 (799)
63 COG2956 Predicted N-acetylgluc 99.2 5.2E-08 1.1E-12 88.2 25.5 245 333-583 47-305 (389)
64 PRK12370 invasion protein regu 99.1 1.2E-08 2.5E-13 107.5 24.5 245 336-590 276-536 (553)
65 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 3E-13 97.7 20.9 189 393-588 65-264 (296)
66 KOG0985 Vesicle coat protein c 99.1 6.6E-06 1.4E-10 85.6 40.1 157 423-600 1104-1260(1666)
67 KOG0985 Vesicle coat protein c 99.1 2E-05 4.4E-10 82.1 43.4 532 3-572 615-1325(1666)
68 COG3063 PilF Tfp pilus assembl 99.1 1.1E-08 2.5E-13 88.2 17.2 161 426-591 38-204 (250)
69 KOG1173 Anaphase-promoting com 99.1 1E-07 2.3E-12 92.8 25.7 245 234-484 258-515 (611)
70 TIGR02521 type_IV_pilW type IV 99.1 1.4E-08 3E-13 95.0 20.0 163 423-589 31-198 (234)
71 KOG1840 Kinesin light chain [C 99.1 7.1E-08 1.5E-12 96.8 24.8 240 255-553 199-477 (508)
72 PRK12370 invasion protein regu 99.1 3.2E-08 7E-13 104.2 23.1 209 372-588 276-501 (553)
73 KOG2047 mRNA splicing factor [ 99.1 2.9E-05 6.3E-10 77.3 43.4 470 59-547 140-715 (835)
74 KOG2376 Signal recognition par 99.0 3.3E-06 7.2E-11 83.0 33.1 466 62-602 17-528 (652)
75 KOG1174 Anaphase-promoting com 99.0 7.8E-06 1.7E-10 76.9 34.0 312 286-636 190-519 (564)
76 KOG1129 TPR repeat-containing 99.0 1.7E-08 3.6E-13 91.3 15.3 224 325-589 227-458 (478)
77 KOG1129 TPR repeat-containing 99.0 1.6E-08 3.5E-13 91.4 14.7 230 292-561 225-464 (478)
78 KOG3785 Uncharacterized conser 99.0 2.9E-06 6.3E-11 77.9 28.0 384 168-594 66-495 (557)
79 PRK11189 lipoprotein NlpI; Pro 98.9 6.6E-07 1.4E-11 86.1 24.5 226 336-571 41-282 (296)
80 PF12569 NARP1: NMDA receptor- 98.9 1.5E-05 3.2E-10 81.4 34.0 45 541-585 472-516 (517)
81 KOG1156 N-terminal acetyltrans 98.9 0.00011 2.3E-09 73.6 38.1 456 67-583 17-505 (700)
82 KOG3616 Selective LIM binding 98.8 1.5E-05 3.2E-10 80.2 30.8 218 330-585 741-962 (1636)
83 PF12569 NARP1: NMDA receptor- 98.8 4.4E-06 9.6E-11 85.2 27.9 124 460-586 196-331 (517)
84 KOG4162 Predicted calmodulin-b 98.8 5.8E-05 1.3E-09 77.0 34.0 442 45-561 311-789 (799)
85 cd05804 StaR_like StaR_like; a 98.8 1.1E-05 2.4E-10 80.8 29.4 258 330-590 52-337 (355)
86 COG3063 PilF Tfp pilus assembl 98.8 1.6E-06 3.5E-11 75.2 19.4 191 395-588 38-235 (250)
87 KOG3617 WD40 and TPR repeat-co 98.8 0.00012 2.5E-09 75.1 34.3 376 56-484 725-1171(1416)
88 KOG0548 Molecular co-chaperone 98.8 1.1E-05 2.5E-10 78.6 26.2 213 360-588 229-454 (539)
89 PF04733 Coatomer_E: Coatomer 98.7 1.6E-06 3.5E-11 82.2 19.6 226 323-560 37-270 (290)
90 KOG3616 Selective LIM binding 98.7 8.8E-05 1.9E-09 74.9 31.9 260 297-588 739-1023(1636)
91 TIGR03302 OM_YfiO outer membra 98.7 2.1E-06 4.6E-11 80.2 20.0 179 391-589 32-232 (235)
92 PRK15359 type III secretion sy 98.7 5.9E-07 1.3E-11 75.9 13.1 122 444-572 14-138 (144)
93 KOG1156 N-terminal acetyltrans 98.7 0.00022 4.8E-09 71.5 32.3 400 198-603 12-487 (700)
94 PF04733 Coatomer_E: Coatomer 98.7 1.1E-06 2.3E-11 83.4 16.0 242 331-588 11-264 (290)
95 PRK10370 formate-dependent nit 98.7 2.8E-06 6E-11 76.0 17.8 116 471-589 52-173 (198)
96 KOG3617 WD40 and TPR repeat-co 98.6 0.00014 3.1E-09 74.5 30.8 58 122-186 725-784 (1416)
97 PF12854 PPR_1: PPR repeat 98.6 3E-08 6.6E-13 59.2 3.2 33 87-119 2-34 (34)
98 KOG1125 TPR repeat-containing 98.6 1.2E-06 2.5E-11 86.1 15.3 213 372-587 300-525 (579)
99 KOG2376 Signal recognition par 98.6 0.00025 5.4E-09 70.3 31.1 405 131-588 20-486 (652)
100 KOG1127 TPR repeat-containing 98.6 9.5E-05 2E-09 77.5 29.5 466 79-586 478-993 (1238)
101 PRK04841 transcriptional regul 98.6 0.001 2.3E-08 75.8 41.9 86 264-349 418-519 (903)
102 KOG4340 Uncharacterized conser 98.6 8.7E-06 1.9E-10 73.1 19.1 293 250-584 5-334 (459)
103 KOG0548 Molecular co-chaperone 98.6 0.00013 2.7E-09 71.6 28.1 235 326-573 229-473 (539)
104 KOG1127 TPR repeat-containing 98.6 0.00016 3.4E-09 75.9 30.1 519 59-587 494-1102(1238)
105 PF12854 PPR_1: PPR repeat 98.6 9.9E-08 2.1E-12 57.0 4.3 33 489-521 2-34 (34)
106 PRK15179 Vi polysaccharide bio 98.6 5.6E-06 1.2E-10 87.8 20.1 170 422-602 85-258 (694)
107 KOG1914 mRNA cleavage and poly 98.5 0.0011 2.5E-08 65.1 32.8 170 337-509 347-525 (656)
108 PRK15359 type III secretion sy 98.5 1.4E-06 3E-11 73.6 12.0 105 479-588 14-120 (144)
109 PRK10370 formate-dependent nit 98.5 1.5E-05 3.2E-10 71.3 18.1 157 398-566 22-184 (198)
110 KOG1070 rRNA processing protei 98.5 1.3E-05 2.9E-10 86.4 20.2 201 389-593 1455-1667(1710)
111 KOG1128 Uncharacterized conser 98.5 8.2E-06 1.8E-10 82.4 17.3 187 388-589 394-582 (777)
112 cd05804 StaR_like StaR_like; a 98.5 0.00035 7.7E-09 70.0 29.3 265 322-590 7-294 (355)
113 KOG0624 dsRNA-activated protei 98.4 0.00016 3.5E-09 66.6 23.2 184 401-588 164-369 (504)
114 PRK15363 pathogenicity island 98.4 4.1E-06 8.9E-11 69.3 11.1 100 489-588 28-131 (157)
115 COG4783 Putative Zn-dependent 98.4 0.00015 3.3E-09 70.4 22.9 143 426-590 309-455 (484)
116 TIGR03302 OM_YfiO outer membra 98.4 2.6E-05 5.6E-10 72.8 17.6 183 352-557 30-234 (235)
117 TIGR02552 LcrH_SycD type III s 98.4 5.7E-06 1.2E-10 69.6 11.8 100 489-588 11-113 (135)
118 KOG1128 Uncharacterized conser 98.4 0.00011 2.3E-09 74.7 22.0 217 286-521 394-614 (777)
119 KOG1125 TPR repeat-containing 98.4 3.1E-05 6.7E-10 76.4 17.8 83 300-384 295-380 (579)
120 PRK04841 transcriptional regul 98.3 0.0044 9.6E-08 70.7 37.7 82 234-315 466-556 (903)
121 COG5010 TadD Flp pilus assembl 98.3 8.4E-05 1.8E-09 66.2 17.6 152 429-583 72-225 (257)
122 PLN02789 farnesyltranstransfer 98.3 0.00029 6.3E-09 67.9 22.6 181 402-586 81-299 (320)
123 KOG1070 rRNA processing protei 98.3 0.00021 4.6E-09 77.6 23.1 159 394-556 1499-1664(1710)
124 PLN02789 farnesyltranstransfer 98.3 0.00014 3E-09 70.1 19.9 184 401-588 46-249 (320)
125 COG5010 TadD Flp pilus assembl 98.3 6.5E-05 1.4E-09 67.0 16.1 134 454-590 62-198 (257)
126 KOG4340 Uncharacterized conser 98.3 3.1E-05 6.8E-10 69.7 14.1 198 395-598 13-216 (459)
127 PRK15179 Vi polysaccharide bio 98.3 0.0002 4.4E-09 76.2 22.7 141 388-533 82-229 (694)
128 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 4E-11 52.6 4.5 35 424-458 1-35 (35)
129 KOG3060 Uncharacterized conser 98.2 0.00042 9E-09 61.4 19.2 166 396-564 56-229 (289)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.8E-10 76.4 13.4 121 462-587 173-295 (395)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.8E-05 1E-09 74.6 15.0 125 393-521 170-295 (395)
132 PRK14720 transcript cleavage f 98.2 0.00045 9.8E-09 74.4 23.0 231 290-571 31-268 (906)
133 TIGR00756 PPR pentatricopeptid 98.2 3.6E-06 7.8E-11 51.3 4.4 35 124-159 1-35 (35)
134 KOG0624 dsRNA-activated protei 98.1 0.0072 1.6E-07 56.1 30.1 192 365-564 165-379 (504)
135 PF13812 PPR_3: Pentatricopept 98.1 5.2E-06 1.1E-10 50.1 4.4 33 424-456 2-34 (34)
136 COG4783 Putative Zn-dependent 98.1 0.00036 7.9E-09 67.8 18.7 176 407-588 252-436 (484)
137 KOG2053 Mitochondrial inherita 98.1 0.023 5E-07 59.8 35.6 212 6-222 21-254 (932)
138 KOG3060 Uncharacterized conser 98.1 0.00046 9.9E-09 61.1 16.9 158 426-588 55-219 (289)
139 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.5E-09 61.5 13.3 114 445-563 5-122 (135)
140 PF13812 PPR_3: Pentatricopept 98.0 8.4E-06 1.8E-10 49.2 4.4 33 124-157 2-34 (34)
141 KOG3081 Vesicle coat complex C 98.0 0.0045 9.8E-08 55.5 22.5 175 379-560 95-276 (299)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00022 4.9E-09 60.5 13.8 84 500-584 54-142 (145)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00054 1.2E-08 58.1 15.4 124 426-552 15-144 (145)
144 KOG2053 Mitochondrial inherita 97.9 0.044 9.6E-07 57.8 34.1 211 68-285 20-256 (932)
145 cd00189 TPR Tetratricopeptide 97.9 0.00011 2.4E-09 57.0 9.8 92 497-588 3-96 (100)
146 PF13414 TPR_11: TPR repeat; P 97.9 4.7E-05 1E-09 55.0 6.5 64 525-588 2-66 (69)
147 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.9E-10 46.5 3.5 31 424-454 1-31 (31)
148 PRK14720 transcript cleavage f 97.8 0.00063 1.4E-08 73.3 16.7 115 460-590 118-253 (906)
149 KOG0553 TPR repeat-containing 97.8 0.00013 2.9E-09 66.3 9.8 91 470-563 93-186 (304)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00031 6.8E-09 57.3 11.5 100 462-561 6-111 (119)
151 PLN03088 SGT1, suppressor of 97.8 0.00022 4.8E-09 70.4 12.3 105 465-572 9-116 (356)
152 PF12895 Apc3: Anaphase-promot 97.8 2E-05 4.3E-10 59.6 3.5 77 508-585 3-83 (84)
153 KOG3081 Vesicle coat complex C 97.8 0.0039 8.6E-08 55.9 17.9 149 429-587 114-269 (299)
154 PLN03088 SGT1, suppressor of 97.8 0.00039 8.4E-09 68.7 13.2 101 429-533 8-110 (356)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00039 8.5E-09 56.7 11.1 96 495-590 3-106 (119)
156 KOG1914 mRNA cleavage and poly 97.8 0.054 1.2E-06 53.8 34.7 210 373-585 309-535 (656)
157 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.6E-10 44.8 3.7 31 124-155 1-31 (31)
158 PRK15331 chaperone protein Sic 97.7 0.00029 6.3E-09 58.7 9.6 100 489-588 31-133 (165)
159 PF13432 TPR_16: Tetratricopep 97.7 9.7E-05 2.1E-09 52.6 6.0 57 532-588 3-59 (65)
160 COG4235 Cytochrome c biogenesi 97.7 0.00047 1E-08 63.3 11.2 108 491-598 152-265 (287)
161 PF04840 Vps16_C: Vps16, C-ter 97.7 0.06 1.3E-06 51.9 26.9 103 399-518 184-286 (319)
162 PF05843 Suf: Suppressor of fo 97.7 0.0021 4.5E-08 61.2 15.6 135 424-561 2-142 (280)
163 PRK02603 photosystem I assembl 97.6 0.0016 3.5E-08 57.1 13.5 130 422-575 34-166 (172)
164 PRK02603 photosystem I assembl 97.6 0.0011 2.3E-08 58.3 11.4 82 494-575 35-121 (172)
165 PRK10153 DNA-binding transcrip 97.5 0.0039 8.5E-08 64.5 16.9 139 421-561 335-488 (517)
166 KOG0553 TPR repeat-containing 97.5 0.00094 2E-08 61.0 10.2 87 501-587 88-176 (304)
167 CHL00033 ycf3 photosystem I as 97.5 0.0043 9.3E-08 54.2 14.4 80 423-505 35-117 (168)
168 PF14559 TPR_19: Tetratricopep 97.5 0.00021 4.6E-09 51.3 4.7 52 537-588 2-53 (68)
169 PF13432 TPR_16: Tetratricopep 97.5 0.0003 6.6E-09 50.0 5.4 61 500-560 3-65 (65)
170 CHL00033 ycf3 photosystem I as 97.4 0.0012 2.6E-08 57.7 10.2 92 494-585 35-138 (168)
171 PRK10153 DNA-binding transcrip 97.4 0.005 1.1E-07 63.7 15.9 133 452-588 331-481 (517)
172 cd00189 TPR Tetratricopeptide 97.4 0.0014 2.9E-08 50.7 9.6 88 426-517 3-91 (100)
173 PF13371 TPR_9: Tetratricopept 97.4 0.00053 1.1E-08 50.1 6.5 57 533-589 2-58 (73)
174 PF08579 RPM2: Mitochondrial r 97.4 0.0016 3.5E-08 50.0 9.0 87 60-170 28-115 (120)
175 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.6E-09 43.6 2.3 32 549-580 2-33 (34)
176 PF12895 Apc3: Anaphase-promot 97.4 0.00056 1.2E-08 51.6 6.4 79 436-518 2-82 (84)
177 PF08579 RPM2: Mitochondrial r 97.4 0.0029 6.2E-08 48.7 9.9 81 425-506 27-116 (120)
178 KOG1538 Uncharacterized conser 97.3 0.041 8.9E-07 55.7 20.1 106 434-553 727-844 (1081)
179 PF14559 TPR_19: Tetratricopep 97.3 0.00032 6.9E-09 50.4 4.4 58 470-530 3-62 (68)
180 PF10037 MRP-S27: Mitochondria 97.3 0.0015 3.3E-08 64.6 10.4 119 88-207 62-186 (429)
181 KOG0550 Molecular chaperone (D 97.3 0.0044 9.6E-08 59.1 12.7 162 431-598 177-359 (486)
182 PF06239 ECSIT: Evolutionarily 97.3 0.0036 7.8E-08 54.7 11.1 118 54-187 44-167 (228)
183 PF04840 Vps16_C: Vps16, C-ter 97.3 0.15 3.2E-06 49.2 23.2 111 459-586 178-288 (319)
184 PF13281 DUF4071: Domain of un 97.2 0.058 1.2E-06 52.5 19.2 161 397-560 146-339 (374)
185 PF13414 TPR_11: TPR repeat; P 97.2 0.001 2.3E-08 47.9 5.9 64 494-557 3-69 (69)
186 PF07079 DUF1347: Protein of u 97.2 0.27 5.8E-06 48.1 31.0 440 69-531 18-530 (549)
187 PF06239 ECSIT: Evolutionarily 97.2 0.0059 1.3E-07 53.4 10.9 96 413-509 35-153 (228)
188 PF10037 MRP-S27: Mitochondria 97.2 0.007 1.5E-07 60.0 12.8 128 44-172 50-186 (429)
189 PF12688 TPR_5: Tetratrico pep 97.1 0.016 3.6E-07 46.5 12.4 91 429-519 7-100 (120)
190 PF05843 Suf: Suppressor of fo 97.1 0.0051 1.1E-07 58.6 11.0 129 459-589 2-136 (280)
191 PRK15363 pathogenicity island 97.1 0.01 2.3E-07 49.4 11.2 84 430-518 42-127 (157)
192 COG3898 Uncharacterized membra 97.0 0.33 7.2E-06 46.5 21.6 283 293-587 85-390 (531)
193 PF13428 TPR_14: Tetratricopep 97.0 0.0014 3.1E-08 41.9 4.4 42 527-568 2-43 (44)
194 COG4700 Uncharacterized protei 97.0 0.023 4.9E-07 48.1 12.1 148 435-586 68-219 (251)
195 PF12688 TPR_5: Tetratrico pep 97.0 0.0082 1.8E-07 48.2 9.4 55 529-583 41-98 (120)
196 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0044 9.5E-08 60.8 8.9 64 525-588 74-140 (453)
197 PF14938 SNAP: Soluble NSF att 96.9 0.079 1.7E-06 50.7 17.6 20 328-347 42-61 (282)
198 PF13371 TPR_9: Tetratricopept 96.9 0.0034 7.5E-08 45.7 6.5 65 502-566 3-69 (73)
199 PRK10803 tol-pal system protei 96.9 0.019 4.2E-07 53.6 12.9 100 461-560 146-251 (263)
200 PRK10803 tol-pal system protei 96.9 0.0075 1.6E-07 56.4 10.1 95 494-588 143-245 (263)
201 PRK10866 outer membrane biogen 96.9 0.11 2.5E-06 48.1 17.8 56 532-587 181-239 (243)
202 PRK10866 outer membrane biogen 96.9 0.31 6.8E-06 45.2 20.4 52 466-517 183-235 (243)
203 KOG1130 Predicted G-alpha GTPa 96.8 0.0065 1.4E-07 57.8 8.8 129 459-587 196-342 (639)
204 KOG2796 Uncharacterized conser 96.7 0.14 2.9E-06 46.2 15.7 168 395-562 139-322 (366)
205 COG4700 Uncharacterized protei 96.7 0.17 3.6E-06 43.1 15.1 122 425-546 91-213 (251)
206 PF14938 SNAP: Soluble NSF att 96.7 0.63 1.4E-05 44.5 25.7 97 425-521 157-264 (282)
207 PF03704 BTAD: Bacterial trans 96.7 0.029 6.3E-07 47.6 11.3 69 527-595 63-136 (146)
208 KOG2041 WD40 repeat protein [G 96.6 1.2 2.6E-05 46.2 24.2 236 54-349 689-951 (1189)
209 KOG0543 FKBP-type peptidyl-pro 96.5 0.018 4E-07 55.3 9.7 82 527-636 258-339 (397)
210 PF12921 ATP13: Mitochondrial 96.5 0.033 7.1E-07 45.3 9.7 52 453-504 47-98 (126)
211 KOG1538 Uncharacterized conser 96.4 0.47 1E-05 48.5 18.6 70 162-247 601-672 (1081)
212 PF13424 TPR_12: Tetratricopep 96.4 0.0032 7E-08 46.6 3.2 59 528-586 7-72 (78)
213 PF09205 DUF1955: Domain of un 96.4 0.16 3.4E-06 40.6 12.2 141 433-592 12-152 (161)
214 PF07079 DUF1347: Protein of u 96.4 1.2 2.5E-05 43.9 33.4 432 5-500 17-531 (549)
215 PF13424 TPR_12: Tetratricopep 96.4 0.0076 1.7E-07 44.6 5.0 61 494-554 5-74 (78)
216 PRK11906 transcriptional regul 96.3 0.077 1.7E-06 52.5 12.7 62 524-585 336-397 (458)
217 PF13525 YfiO: Outer membrane 96.3 0.14 3.1E-06 46.1 13.9 49 532-580 147-198 (203)
218 PF13525 YfiO: Outer membrane 96.3 0.57 1.2E-05 42.2 17.8 50 464-513 147-197 (203)
219 COG3898 Uncharacterized membra 96.3 1.1 2.5E-05 43.0 25.4 244 303-554 133-391 (531)
220 KOG2796 Uncharacterized conser 96.3 0.21 4.5E-06 45.1 14.0 136 323-462 179-323 (366)
221 KOG1130 Predicted G-alpha GTPa 96.1 0.12 2.7E-06 49.5 12.6 152 425-576 197-371 (639)
222 PF13512 TPR_18: Tetratricopep 96.0 0.18 3.8E-06 41.5 11.2 73 501-573 17-97 (142)
223 KOG0550 Molecular chaperone (D 95.9 2 4.2E-05 41.9 20.7 206 372-583 184-437 (486)
224 KOG0543 FKBP-type peptidyl-pro 95.9 0.084 1.8E-06 50.9 10.4 137 430-588 215-354 (397)
225 PF12921 ATP13: Mitochondrial 95.7 0.094 2E-06 42.6 8.9 79 457-535 1-97 (126)
226 COG4235 Cytochrome c biogenesi 95.7 0.3 6.6E-06 45.4 13.2 101 457-560 155-261 (287)
227 KOG3941 Intermediate in Toll s 95.6 0.12 2.7E-06 47.0 9.9 100 410-510 52-174 (406)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.082 1.8E-06 52.2 9.4 62 494-555 75-141 (453)
229 COG1729 Uncharacterized protei 95.5 0.12 2.7E-06 47.2 9.8 89 472-560 155-249 (262)
230 KOG2280 Vacuolar assembly/sort 95.4 4.4 9.5E-05 42.7 24.6 108 323-446 686-793 (829)
231 PF03704 BTAD: Bacterial trans 95.3 0.15 3.2E-06 43.2 9.4 70 426-496 65-138 (146)
232 COG5107 RNA14 Pre-mRNA 3'-end 95.3 3.2 7E-05 40.9 32.1 136 421-560 395-536 (660)
233 KOG2280 Vacuolar assembly/sort 95.3 4.7 0.0001 42.5 30.2 114 455-584 681-794 (829)
234 KOG1920 IkappaB kinase complex 95.3 6 0.00013 44.1 22.6 111 425-553 941-1053(1265)
235 COG1729 Uncharacterized protei 95.3 0.15 3.2E-06 46.7 9.3 100 425-526 144-248 (262)
236 KOG3941 Intermediate in Toll s 95.2 0.15 3.2E-06 46.5 9.0 111 110-221 52-186 (406)
237 KOG4555 TPR repeat-containing 95.2 0.22 4.7E-06 39.7 8.7 103 467-572 52-161 (175)
238 KOG1920 IkappaB kinase complex 95.1 7.1 0.00015 43.6 24.1 158 304-521 894-1053(1265)
239 COG3118 Thioredoxin domain-con 95.0 1.3 2.9E-05 41.1 14.8 118 466-587 142-263 (304)
240 PF10300 DUF3808: Protein of u 95.0 1.4 3.1E-05 45.4 17.1 115 471-588 246-375 (468)
241 PF07719 TPR_2: Tetratricopept 94.9 0.082 1.8E-06 31.2 4.8 33 527-559 2-34 (34)
242 KOG2610 Uncharacterized conser 94.9 0.87 1.9E-05 42.8 13.2 152 404-560 115-283 (491)
243 PF04053 Coatomer_WDAD: Coatom 94.8 0.61 1.3E-05 47.4 13.3 45 504-551 328-372 (443)
244 PRK11906 transcriptional regul 94.7 1.3 2.8E-05 44.2 14.8 142 439-584 274-431 (458)
245 COG5107 RNA14 Pre-mRNA 3'-end 94.7 4.9 0.00011 39.7 26.9 129 458-588 397-530 (660)
246 PF00515 TPR_1: Tetratricopept 94.7 0.073 1.6E-06 31.5 4.1 32 527-558 2-33 (34)
247 KOG4555 TPR repeat-containing 94.5 0.14 3.1E-06 40.6 6.2 88 431-519 51-140 (175)
248 KOG1941 Acetylcholine receptor 94.4 0.62 1.3E-05 44.2 11.0 159 425-583 85-269 (518)
249 COG0457 NrfG FOG: TPR repeat [ 94.3 4.1 8.8E-05 37.2 26.2 193 392-588 59-264 (291)
250 PRK11619 lytic murein transgly 94.3 9.2 0.0002 41.3 30.4 67 299-366 108-174 (644)
251 PF09613 HrpB1_HrpK: Bacterial 94.2 2.3 4.9E-05 35.9 13.1 87 468-557 20-108 (160)
252 PF10300 DUF3808: Protein of u 93.9 2.2 4.7E-05 44.2 15.3 111 372-484 248-373 (468)
253 PRK15331 chaperone protein Sic 93.8 0.99 2.1E-05 38.2 10.3 88 433-524 47-135 (165)
254 PF13170 DUF4003: Protein of u 93.8 2.1 4.5E-05 41.0 13.9 130 372-504 77-227 (297)
255 KOG2114 Vacuolar assembly/sort 93.7 8.2 0.00018 41.4 18.6 119 56-183 333-455 (933)
256 KOG4234 TPR repeat-containing 93.7 0.38 8.3E-06 41.5 7.7 87 502-588 103-196 (271)
257 PF08631 SPO22: Meiosis protei 93.6 7 0.00015 37.3 21.7 17 171-187 5-21 (278)
258 smart00299 CLH Clathrin heavy 93.3 3.2 7E-05 34.6 13.1 86 60-150 10-95 (140)
259 smart00299 CLH Clathrin heavy 93.2 4.4 9.5E-05 33.8 14.4 40 397-436 12-54 (140)
260 COG4105 ComL DNA uptake lipopr 93.1 6.9 0.00015 35.9 20.9 57 532-588 173-232 (254)
261 PF13512 TPR_18: Tetratricopep 93.1 2.7 5.8E-05 34.7 11.4 113 431-560 18-133 (142)
262 PF04184 ST7: ST7 protein; In 93.0 2.4 5.1E-05 42.6 12.9 140 436-587 181-322 (539)
263 PF04097 Nic96: Nup93/Nic96; 93.0 6 0.00013 42.6 17.3 87 328-420 265-355 (613)
264 PF04053 Coatomer_WDAD: Coatom 92.9 3.1 6.7E-05 42.4 14.2 153 231-415 272-425 (443)
265 KOG2114 Vacuolar assembly/sort 92.8 7.9 0.00017 41.5 16.8 139 401-551 377-515 (933)
266 PF13176 TPR_7: Tetratricopept 92.7 0.22 4.7E-06 30.0 3.7 26 562-587 1-26 (36)
267 PF02259 FAT: FAT domain; Int 92.6 12 0.00025 37.2 19.7 149 422-573 145-305 (352)
268 PF13281 DUF4071: Domain of un 92.5 12 0.00026 36.9 18.2 72 294-365 145-227 (374)
269 PF09205 DUF1955: Domain of un 92.4 1.6 3.5E-05 35.1 8.9 58 429-487 92-149 (161)
270 COG3629 DnrI DNA-binding trans 92.3 0.76 1.6E-05 42.9 8.3 62 527-588 154-215 (280)
271 KOG1585 Protein required for f 92.3 8.5 0.00018 34.9 17.3 48 535-583 199-250 (308)
272 COG3118 Thioredoxin domain-con 92.3 10 0.00022 35.6 16.5 154 431-586 142-299 (304)
273 PF04184 ST7: ST7 protein; In 92.1 12 0.00026 37.8 16.4 56 429-484 265-321 (539)
274 PF13181 TPR_8: Tetratricopept 92.0 0.36 7.7E-06 28.4 4.0 31 528-558 3-33 (34)
275 KOG2610 Uncharacterized conser 91.9 1.9 4.2E-05 40.6 10.2 162 434-598 114-285 (491)
276 PF00637 Clathrin: Region in C 91.8 0.048 1E-06 46.0 -0.1 86 62-151 12-97 (143)
277 KOG1258 mRNA processing protei 91.7 18 0.00039 37.4 28.7 179 391-574 296-489 (577)
278 PF13176 TPR_7: Tetratricopept 91.4 0.4 8.8E-06 28.8 3.8 28 528-555 1-28 (36)
279 COG4785 NlpI Lipoprotein NlpI, 91.4 10 0.00022 33.7 14.6 177 405-588 78-265 (297)
280 COG3947 Response regulator con 91.1 8.7 0.00019 35.7 13.3 59 529-587 282-340 (361)
281 PF13170 DUF4003: Protein of u 91.0 2.9 6.3E-05 40.0 11.0 133 141-297 79-224 (297)
282 PF08631 SPO22: Meiosis protei 91.0 15 0.00032 35.1 24.4 61 397-458 126-192 (278)
283 KOG1941 Acetylcholine receptor 90.8 16 0.00035 35.2 18.3 19 561-579 332-350 (518)
284 COG0457 NrfG FOG: TPR repeat [ 90.8 13 0.00027 33.8 24.9 182 372-558 74-268 (291)
285 PF09613 HrpB1_HrpK: Bacterial 90.7 1.8 3.9E-05 36.5 8.1 48 539-586 23-70 (160)
286 PF10602 RPN7: 26S proteasome 90.5 6.1 0.00013 34.6 11.8 95 425-521 38-140 (177)
287 PF13428 TPR_14: Tetratricopep 90.5 0.7 1.5E-05 29.3 4.5 26 426-451 4-29 (44)
288 TIGR02561 HrpB1_HrpK type III 90.4 1.8 4E-05 35.7 7.7 52 539-590 23-74 (153)
289 PF14432 DYW_deaminase: DYW fa 90.0 0.31 6.6E-06 39.0 3.0 28 596-629 2-29 (116)
290 KOG2041 WD40 repeat protein [G 89.9 29 0.00062 36.7 29.4 124 399-533 930-1064(1189)
291 KOG0890 Protein kinase of the 89.8 59 0.0013 40.0 28.8 308 261-589 1389-1731(2382)
292 PF07035 Mic1: Colon cancer-as 89.4 13 0.00028 31.9 13.2 134 240-386 14-149 (167)
293 TIGR02561 HrpB1_HrpK type III 89.2 10 0.00022 31.6 11.0 66 470-538 22-89 (153)
294 KOG4570 Uncharacterized conser 88.9 4.2 9.2E-05 38.1 9.6 98 188-285 58-165 (418)
295 KOG4648 Uncharacterized conser 88.9 1.3 2.8E-05 41.8 6.4 95 431-561 105-200 (536)
296 PF13431 TPR_17: Tetratricopep 88.6 0.57 1.2E-05 27.7 2.8 25 490-514 8-33 (34)
297 COG3629 DnrI DNA-binding trans 88.6 4.5 9.7E-05 38.0 9.9 77 426-503 156-236 (280)
298 KOG4570 Uncharacterized conser 88.4 2.5 5.4E-05 39.5 7.8 101 86-189 58-165 (418)
299 PF07035 Mic1: Colon cancer-as 88.3 15 0.00034 31.5 15.6 37 276-312 15-51 (167)
300 PF00515 TPR_1: Tetratricopept 88.2 1.1 2.4E-05 26.3 3.9 27 425-451 3-29 (34)
301 PRK10941 hypothetical protein; 88.2 2.9 6.3E-05 39.3 8.5 82 529-635 184-265 (269)
302 PF07719 TPR_2: Tetratricopept 87.7 0.94 2E-05 26.5 3.4 28 561-588 2-29 (34)
303 KOG1586 Protein required for f 87.6 15 0.00032 33.2 11.7 26 537-562 165-190 (288)
304 COG4105 ComL DNA uptake lipopr 87.6 23 0.0005 32.6 17.8 47 468-514 177-224 (254)
305 PF07721 TPR_4: Tetratricopept 87.4 0.85 1.9E-05 24.9 2.8 24 561-584 2-25 (26)
306 KOG1585 Protein required for f 87.3 23 0.00049 32.3 13.0 135 425-584 33-174 (308)
307 PF02259 FAT: FAT domain; Int 86.9 24 0.00052 35.0 15.1 68 524-591 144-215 (352)
308 KOG2066 Vacuolar assembly/sort 86.7 50 0.0011 35.6 21.0 35 195-229 393-427 (846)
309 COG2976 Uncharacterized protei 86.7 21 0.00046 31.3 13.4 115 441-559 70-192 (207)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 11 0.00024 28.5 8.7 63 438-502 22-84 (103)
311 PF10602 RPN7: 26S proteasome 86.3 8.3 0.00018 33.7 9.8 95 393-487 37-142 (177)
312 PRK09687 putative lyase; Provi 86.2 32 0.00068 32.8 26.2 17 391-407 141-157 (280)
313 COG4649 Uncharacterized protei 86.2 13 0.00028 31.8 10.1 121 433-554 68-195 (221)
314 KOG2066 Vacuolar assembly/sort 85.7 56 0.0012 35.2 23.1 150 67-226 366-537 (846)
315 PF02284 COX5A: Cytochrome c o 85.7 6.1 0.00013 30.2 7.2 61 441-503 28-88 (108)
316 PF13174 TPR_6: Tetratricopept 85.5 1.9 4.2E-05 24.8 3.9 24 534-557 8-31 (33)
317 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 4.2 9.2E-05 27.0 5.5 34 531-564 6-39 (53)
318 PF13181 TPR_8: Tetratricopept 84.7 2 4.3E-05 25.1 3.8 28 561-588 2-29 (34)
319 PF02284 COX5A: Cytochrome c o 84.4 8.2 0.00018 29.6 7.4 48 520-567 39-86 (108)
320 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 7.6 0.00017 29.4 7.0 47 520-566 36-82 (103)
321 PF13174 TPR_6: Tetratricopept 84.0 1.4 3E-05 25.5 2.8 28 562-589 2-29 (33)
322 PRK15180 Vi polysaccharide bio 83.7 9.2 0.0002 38.1 9.5 85 504-588 333-419 (831)
323 KOG0890 Protein kinase of the 83.6 1.2E+02 0.0027 37.5 32.4 123 197-327 1423-1552(2382)
324 COG4785 NlpI Lipoprotein NlpI, 83.4 3.9 8.5E-05 36.1 6.2 31 489-519 93-124 (297)
325 PF04097 Nic96: Nup93/Nic96; 83.1 73 0.0016 34.5 23.9 64 97-160 116-188 (613)
326 PF10345 Cohesin_load: Cohesin 83.1 74 0.0016 34.5 31.6 191 23-221 28-252 (608)
327 PF10579 Rapsyn_N: Rapsyn N-te 83.1 3.5 7.6E-05 29.8 4.8 47 470-516 18-65 (80)
328 PF06552 TOM20_plant: Plant sp 83.0 13 0.00029 32.1 9.1 34 542-575 51-84 (186)
329 PF13374 TPR_10: Tetratricopep 82.9 2.3 4.9E-05 26.2 3.7 28 561-588 3-30 (42)
330 KOG4234 TPR repeat-containing 82.7 22 0.00048 31.2 10.3 86 431-520 103-194 (271)
331 KOG0276 Vesicle coat complex C 82.5 28 0.0006 36.2 12.4 147 404-584 598-745 (794)
332 KOG1550 Extracellular protein 82.0 76 0.0017 33.9 16.9 52 540-593 378-430 (552)
333 PF00637 Clathrin: Region in C 81.4 1 2.2E-05 37.9 2.1 86 260-348 12-97 (143)
334 smart00028 TPR Tetratricopepti 81.4 2.9 6.4E-05 23.3 3.7 28 530-557 5-32 (34)
335 PF13762 MNE1: Mitochondrial s 81.1 13 0.00029 30.8 8.3 82 94-176 41-132 (145)
336 KOG1498 26S proteasome regulat 80.3 63 0.0014 31.8 19.9 208 388-629 48-279 (439)
337 PF13374 TPR_10: Tetratricopep 80.1 4.4 9.6E-05 24.9 4.3 28 527-554 3-30 (42)
338 PRK15180 Vi polysaccharide bio 79.9 12 0.00025 37.5 8.7 119 436-558 302-423 (831)
339 KOG1258 mRNA processing protei 79.9 82 0.0018 32.9 26.9 173 289-467 296-484 (577)
340 PF11207 DUF2989: Protein of u 79.6 13 0.00028 32.8 8.1 77 35-112 117-198 (203)
341 TIGR02508 type_III_yscG type I 79.3 23 0.00049 27.1 8.1 87 72-163 20-106 (115)
342 KOG1308 Hsp70-interacting prot 78.4 1.2 2.6E-05 42.2 1.6 98 506-603 126-225 (377)
343 KOG1586 Protein required for f 78.4 53 0.0011 29.8 15.2 68 503-570 163-241 (288)
344 COG4455 ImpE Protein of avirul 77.9 52 0.0011 29.5 11.3 125 425-560 3-139 (273)
345 PF11207 DUF2989: Protein of u 77.9 14 0.00031 32.6 7.9 74 506-580 119-198 (203)
346 PF04910 Tcf25: Transcriptiona 77.0 58 0.0013 32.4 13.0 64 525-588 99-167 (360)
347 PHA02875 ankyrin repeat protei 76.7 92 0.002 31.7 15.6 162 44-219 17-190 (413)
348 PF13929 mRNA_stabil: mRNA sta 76.7 69 0.0015 30.3 17.5 113 438-550 143-262 (292)
349 COG2909 MalT ATP-dependent tra 76.6 1.3E+02 0.0028 33.3 20.2 187 404-594 427-652 (894)
350 TIGR02508 type_III_yscG type I 76.3 16 0.00036 27.8 6.6 50 201-250 46-98 (115)
351 PF13929 mRNA_stabil: mRNA sta 75.6 74 0.0016 30.1 13.8 121 95-219 134-263 (292)
352 KOG4648 Uncharacterized conser 75.4 6.7 0.00014 37.3 5.5 82 465-554 104-186 (536)
353 PF13934 ELYS: Nuclear pore co 75.2 40 0.00087 30.9 10.6 105 426-540 79-186 (226)
354 TIGR03504 FimV_Cterm FimV C-te 75.2 5.8 0.00013 25.1 3.5 26 564-589 3-28 (44)
355 KOG0551 Hsp90 co-chaperone CNS 74.9 11 0.00024 35.8 6.8 93 494-586 81-179 (390)
356 PRK12798 chemotaxis protein; R 73.5 1E+02 0.0022 30.8 20.9 177 405-584 125-319 (421)
357 PRK09687 putative lyase; Provi 72.2 93 0.002 29.7 23.6 237 89-365 34-277 (280)
358 PF09986 DUF2225: Uncharacteri 71.7 23 0.00051 32.0 8.1 62 528-589 120-194 (214)
359 smart00386 HAT HAT (Half-A-TPR 70.8 8.8 0.00019 21.7 3.6 30 540-569 1-30 (33)
360 PF14561 TPR_20: Tetratricopep 70.2 13 0.00027 28.2 5.1 40 548-587 10-49 (90)
361 PRK10941 hypothetical protein; 69.0 41 0.00089 31.7 9.3 67 498-564 185-253 (269)
362 KOG4507 Uncharacterized conser 68.9 17 0.00038 37.4 7.0 101 468-571 617-721 (886)
363 PF15469 Sec5: Exocyst complex 68.4 83 0.0018 27.6 10.9 117 428-566 62-179 (182)
364 COG4455 ImpE Protein of avirul 67.6 95 0.0021 28.0 12.3 72 461-535 4-81 (273)
365 PF10345 Cohesin_load: Cohesin 66.8 2E+02 0.0042 31.3 34.7 185 403-587 372-604 (608)
366 KOG1464 COP9 signalosome, subu 66.6 63 0.0014 29.9 9.4 91 498-588 69-173 (440)
367 PF13762 MNE1: Mitochondrial s 65.3 81 0.0018 26.4 9.7 48 458-506 79-127 (145)
368 KOG4642 Chaperone-dependent E3 65.3 22 0.00047 32.3 6.2 86 467-555 19-107 (284)
369 PHA02875 ankyrin repeat protei 65.2 94 0.002 31.7 12.1 140 67-219 9-157 (413)
370 KOG2063 Vacuolar assembly/sort 65.0 2.1E+02 0.0045 32.2 14.7 27 125-152 506-532 (877)
371 PF10579 Rapsyn_N: Rapsyn N-te 64.5 17 0.00037 26.4 4.4 47 435-481 18-66 (80)
372 COG5159 RPN6 26S proteasome re 63.7 1.3E+02 0.0029 28.3 12.8 155 430-584 10-189 (421)
373 PF09670 Cas_Cas02710: CRISPR- 63.4 1.3E+02 0.0027 30.3 12.1 55 432-487 140-198 (379)
374 PF06552 TOM20_plant: Plant sp 63.2 61 0.0013 28.2 8.2 59 441-504 53-123 (186)
375 KOG0545 Aryl-hydrocarbon recep 61.8 44 0.00096 30.5 7.4 53 535-587 239-291 (329)
376 PF07720 TPR_3: Tetratricopept 61.8 32 0.0007 20.6 4.7 30 529-558 4-35 (36)
377 KOG2422 Uncharacterized conser 61.7 1.5E+02 0.0032 31.1 11.8 118 469-586 249-404 (665)
378 COG1747 Uncharacterized N-term 61.5 2E+02 0.0044 29.6 19.1 163 350-521 61-232 (711)
379 KOG4521 Nuclear pore complex, 61.0 2.9E+02 0.0063 31.8 14.5 59 461-519 986-1046(1480)
380 TIGR03504 FimV_Cterm FimV C-te 60.3 21 0.00046 22.6 3.9 24 429-452 5-28 (44)
381 PF07163 Pex26: Pex26 protein; 60.1 90 0.0019 29.3 9.2 87 429-518 89-182 (309)
382 KOG4077 Cytochrome c oxidase, 58.9 65 0.0014 26.0 7.0 60 441-502 67-126 (149)
383 KOG3364 Membrane protein invol 58.1 76 0.0016 26.1 7.4 31 531-561 76-106 (149)
384 PF12862 Apc5: Anaphase-promot 58.1 35 0.00076 26.0 5.7 51 537-587 9-68 (94)
385 COG4649 Uncharacterized protei 57.7 1.3E+02 0.0027 26.1 15.8 119 402-521 68-194 (221)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 57.0 82 0.0018 25.7 7.9 43 476-519 81-124 (126)
387 PF09477 Type_III_YscG: Bacter 56.8 58 0.0013 25.4 6.3 74 175-249 22-98 (116)
388 KOG0376 Serine-threonine phosp 56.5 18 0.00039 36.4 4.6 50 535-584 47-96 (476)
389 PF14561 TPR_20: Tetratricopep 56.4 85 0.0018 23.7 8.4 62 525-586 21-85 (90)
390 COG4976 Predicted methyltransf 56.0 17 0.00037 32.7 3.9 55 505-559 6-62 (287)
391 KOG4279 Serine/threonine prote 55.8 2E+02 0.0044 31.1 11.9 50 501-560 351-400 (1226)
392 KOG0276 Vesicle coat complex C 55.4 71 0.0015 33.4 8.5 100 433-555 596-695 (794)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 91 0.002 25.4 7.9 42 544-585 81-124 (126)
394 PF11768 DUF3312: Protein of u 55.1 1.5E+02 0.0034 30.8 10.9 24 396-419 412-435 (545)
395 PF11663 Toxin_YhaV: Toxin wit 54.6 20 0.00044 29.1 3.8 17 40-56 113-129 (140)
396 KOG3824 Huntingtin interacting 54.4 27 0.00059 32.8 5.1 61 504-564 126-188 (472)
397 PF13934 ELYS: Nuclear pore co 54.2 1.2E+02 0.0026 27.8 9.4 110 452-571 73-183 (226)
398 PF11846 DUF3366: Domain of un 53.9 48 0.001 29.5 6.8 34 524-557 142-175 (193)
399 KOG3807 Predicted membrane pro 53.3 1.2E+02 0.0026 29.1 9.0 55 428-484 280-337 (556)
400 cd00280 TRFH Telomeric Repeat 53.3 1.6E+02 0.0034 25.8 10.1 36 533-569 118-153 (200)
401 KOG0292 Vesicle coat complex C 53.2 18 0.00039 39.2 4.2 90 465-578 627-716 (1202)
402 cd08819 CARD_MDA5_2 Caspase ac 51.7 95 0.0021 23.2 6.5 64 275-340 22-85 (88)
403 PF04090 RNA_pol_I_TF: RNA pol 51.1 1.8E+02 0.0039 25.9 9.5 28 425-452 43-70 (199)
404 KOG4642 Chaperone-dependent E3 51.0 1.4E+02 0.0031 27.3 8.7 81 402-484 20-104 (284)
405 PF10155 DUF2363: Uncharacteri 50.5 1.4E+02 0.003 24.4 8.2 109 8-118 3-124 (126)
406 KOG4077 Cytochrome c oxidase, 50.3 96 0.0021 25.1 6.7 47 519-565 77-123 (149)
407 KOG2908 26S proteasome regulat 50.3 2.1E+02 0.0046 27.7 10.2 17 470-486 87-103 (380)
408 COG0790 FOG: TPR repeat, SEL1 50.3 2.4E+02 0.0051 27.0 16.4 98 473-574 128-236 (292)
409 PRK13800 putative oxidoreducta 49.0 4.7E+02 0.01 30.1 25.0 50 492-541 787-836 (897)
410 PF10366 Vps39_1: Vacuolar sor 49.0 1.3E+02 0.0027 23.8 7.5 27 425-451 41-67 (108)
411 PF11848 DUF3368: Domain of un 48.9 72 0.0016 20.6 5.2 33 434-466 13-45 (48)
412 PF11663 Toxin_YhaV: Toxin wit 48.8 21 0.00046 29.0 3.1 34 433-468 105-138 (140)
413 COG0735 Fur Fe2+/Zn2+ uptake r 48.1 89 0.0019 26.2 7.0 64 44-108 8-71 (145)
414 COG4976 Predicted methyltransf 48.0 39 0.00084 30.5 4.8 55 536-590 5-59 (287)
415 cd08819 CARD_MDA5_2 Caspase ac 47.8 1.2E+02 0.0025 22.8 7.1 39 404-443 48-86 (88)
416 PF14863 Alkyl_sulf_dimr: Alky 47.6 96 0.0021 25.9 6.9 63 511-576 58-120 (141)
417 PF04190 DUF410: Protein of un 46.6 2.6E+02 0.0056 26.4 18.2 83 389-487 87-170 (260)
418 PF07163 Pex26: Pex26 protein; 46.3 2E+02 0.0043 27.2 9.2 21 328-348 90-110 (309)
419 KOG3824 Huntingtin interacting 46.2 30 0.00065 32.6 4.1 53 469-524 127-181 (472)
420 PHA03100 ankyrin repeat protei 45.9 3.2E+02 0.0069 28.5 12.5 18 298-315 288-305 (480)
421 PF11846 DUF3366: Domain of un 45.3 84 0.0018 27.9 6.9 53 469-521 119-171 (193)
422 cd00280 TRFH Telomeric Repeat 44.9 1.2E+02 0.0027 26.4 7.2 61 474-535 85-152 (200)
423 KOG1464 COP9 signalosome, subu 43.8 2.8E+02 0.006 26.0 19.2 207 326-539 70-317 (440)
424 PF04090 RNA_pol_I_TF: RNA pol 43.6 1.6E+02 0.0034 26.3 7.9 91 527-620 42-134 (199)
425 PRK10564 maltose regulon perip 43.5 48 0.001 31.4 5.0 41 425-465 259-299 (303)
426 PF14669 Asp_Glu_race_2: Putat 41.7 2.5E+02 0.0054 24.8 12.7 57 163-219 136-206 (233)
427 PRK13342 recombination factor 41.5 4E+02 0.0087 27.2 13.0 45 125-170 229-276 (413)
428 KOG0508 Ankyrin repeat protein 41.5 4.1E+02 0.0088 27.2 16.4 143 64-219 88-237 (615)
429 COG1747 Uncharacterized N-term 41.3 4.3E+02 0.0093 27.5 21.4 160 320-487 65-234 (711)
430 smart00777 Mad3_BUB1_I Mad3/BU 41.2 2E+02 0.0042 23.5 7.8 40 545-584 82-123 (125)
431 PF11838 ERAP1_C: ERAP1-like C 41.0 3.5E+02 0.0075 26.3 17.5 101 470-570 142-246 (324)
432 PF14689 SPOB_a: Sensor_kinase 40.5 50 0.0011 22.8 3.6 24 462-485 27-50 (62)
433 PF09477 Type_III_YscG: Bacter 40.4 1.8E+02 0.0039 22.8 8.8 16 372-387 21-36 (116)
434 PF10366 Vps39_1: Vacuolar sor 40.2 1.3E+02 0.0028 23.7 6.4 28 322-349 40-67 (108)
435 PF09986 DUF2225: Uncharacteri 40.1 2.9E+02 0.0062 25.1 9.5 60 462-521 122-192 (214)
436 PF12968 DUF3856: Domain of Un 39.1 2E+02 0.0044 23.1 8.5 20 496-515 57-76 (144)
437 PF14853 Fis1_TPR_C: Fis1 C-te 39.0 1E+02 0.0023 20.5 4.8 27 431-459 9-35 (53)
438 KOG2300 Uncharacterized conser 39.0 4.6E+02 0.0099 27.1 16.6 153 429-583 329-508 (629)
439 PF06957 COPI_C: Coatomer (COP 38.9 1.3E+02 0.0028 30.4 7.6 33 527-559 301-333 (422)
440 PF12926 MOZART2: Mitotic-spin 38.3 1.7E+02 0.0037 21.9 7.1 42 276-317 29-70 (88)
441 PF11848 DUF3368: Domain of un 37.9 1.1E+02 0.0024 19.7 4.9 28 139-166 17-44 (48)
442 KOG1498 26S proteasome regulat 37.7 4.3E+02 0.0093 26.4 14.9 109 285-419 47-158 (439)
443 KOG0376 Serine-threonine phosp 37.7 60 0.0013 32.9 5.0 98 435-537 16-116 (476)
444 PHA03100 ankyrin repeat protei 37.6 4.9E+02 0.011 27.0 14.7 19 298-316 255-273 (480)
445 PF12968 DUF3856: Domain of Un 37.4 2.2E+02 0.0047 22.9 8.3 62 525-586 54-126 (144)
446 KOG2758 Translation initiation 37.1 3.9E+02 0.0085 25.8 13.6 167 375-554 18-195 (432)
447 KOG4507 Uncharacterized conser 36.9 1.9E+02 0.0041 30.4 8.2 69 296-364 648-719 (886)
448 KOG2062 26S proteasome regulat 36.7 6E+02 0.013 27.8 24.7 571 40-633 41-675 (929)
449 COG2912 Uncharacterized conser 36.5 1.3E+02 0.0028 28.2 6.6 56 531-586 186-241 (269)
450 PF02847 MA3: MA3 domain; Int 35.8 1.7E+02 0.0038 22.9 6.8 22 296-317 8-29 (113)
451 KOG2471 TPR repeat-containing 35.3 5.2E+02 0.011 26.7 14.1 206 372-596 32-273 (696)
452 PF14689 SPOB_a: Sensor_kinase 35.3 61 0.0013 22.4 3.4 24 428-451 28-51 (62)
453 smart00777 Mad3_BUB1_I Mad3/BU 35.0 2.5E+02 0.0054 22.9 8.6 41 477-518 82-123 (125)
454 KOG1550 Extracellular protein 34.9 6E+02 0.013 27.2 20.7 79 473-557 454-540 (552)
455 PF10475 DUF2450: Protein of u 34.8 2.8E+02 0.0061 26.6 9.1 52 296-349 104-155 (291)
456 KOG2396 HAT (Half-A-TPR) repea 34.5 5.5E+02 0.012 26.7 33.5 95 491-585 456-555 (568)
457 PLN03192 Voltage-dependent pot 34.4 3.9E+02 0.0085 30.4 11.5 21 199-219 624-644 (823)
458 PRK13342 recombination factor 34.4 5.2E+02 0.011 26.4 14.3 112 237-366 154-276 (413)
459 COG5108 RPO41 Mitochondrial DN 34.3 2.1E+02 0.0046 30.5 8.2 72 428-503 33-112 (1117)
460 PRK11639 zinc uptake transcrip 34.1 1.9E+02 0.0042 25.0 7.1 62 47-109 16-77 (169)
461 PF07064 RIC1: RIC1; InterPro 34.1 4E+02 0.0088 25.0 13.5 29 531-559 225-253 (258)
462 KOG4334 Uncharacterized conser 34.1 16 0.00035 36.4 0.5 178 23-207 372-573 (650)
463 PF04034 DUF367: Domain of unk 33.9 2.6E+02 0.0056 22.8 7.5 58 494-551 66-124 (127)
464 PF00244 14-3-3: 14-3-3 protei 33.6 3.9E+02 0.0085 24.7 11.7 161 429-591 7-200 (236)
465 PF12583 TPPII_N: Tripeptidyl 33.4 1.7E+02 0.0038 23.8 5.9 39 535-573 85-123 (139)
466 COG4259 Uncharacterized protei 33.2 1.5E+02 0.0032 22.8 5.2 29 557-585 69-97 (121)
467 COG2909 MalT ATP-dependent tra 33.0 7.5E+02 0.016 27.8 23.9 189 331-521 425-645 (894)
468 COG5191 Uncharacterized conser 32.6 77 0.0017 30.1 4.5 73 494-566 107-182 (435)
469 KOG2581 26S proteasome regulat 32.1 5.4E+02 0.012 25.9 11.6 9 561-569 319-327 (493)
470 smart00638 LPD_N Lipoprotein N 31.8 6.8E+02 0.015 26.9 24.1 57 291-349 311-368 (574)
471 PF11817 Foie-gras_1: Foie gra 31.3 1.6E+02 0.0034 27.5 6.6 25 496-520 180-204 (247)
472 KOG2659 LisH motif-containing 31.3 4.1E+02 0.0089 24.3 12.2 92 425-519 28-128 (228)
473 PRK09462 fur ferric uptake reg 31.2 2.4E+02 0.0052 23.7 7.2 63 46-109 6-69 (148)
474 TIGR02710 CRISPR-associated pr 30.4 5.7E+02 0.012 25.6 11.2 31 430-460 137-167 (380)
475 KOG4814 Uncharacterized conser 30.3 1.7E+02 0.0037 31.1 6.8 61 529-589 397-457 (872)
476 COG3947 Response regulator con 30.0 5E+02 0.011 24.8 13.3 67 426-493 282-352 (361)
477 PRK10564 maltose regulon perip 29.2 1E+02 0.0022 29.4 4.7 38 126-164 260-297 (303)
478 PRK00971 glutaminase; Provisio 29.1 3.9E+02 0.0084 25.8 8.6 77 144-220 168-253 (307)
479 smart00544 MA3 Domain in DAP-5 28.7 2.9E+02 0.0063 21.7 9.2 22 296-317 8-29 (113)
480 PRK14015 pepN aminopeptidase N 28.2 9.6E+02 0.021 27.5 15.1 151 427-581 686-845 (875)
481 cd08326 CARD_CASP9 Caspase act 28.2 2.5E+02 0.0055 20.9 6.1 40 403-442 41-80 (84)
482 COG4941 Predicted RNA polymera 27.7 5.9E+02 0.013 24.9 11.7 120 438-562 271-401 (415)
483 PHA02874 ankyrin repeat protei 27.7 6.8E+02 0.015 25.6 12.0 136 63-219 4-146 (434)
484 PF01347 Vitellogenin_N: Lipop 27.5 8.3E+02 0.018 26.6 19.2 16 523-538 588-603 (618)
485 PF11768 DUF3312: Protein of u 27.3 6.1E+02 0.013 26.7 10.1 56 294-349 412-472 (545)
486 COG5108 RPO41 Mitochondrial DN 26.7 5.3E+02 0.012 27.8 9.5 47 260-306 33-81 (1117)
487 COG0735 Fur Fe2+/Zn2+ uptake r 26.4 3.3E+02 0.0072 22.8 7.0 29 432-460 29-57 (145)
488 PF11817 Foie-gras_1: Foie gra 26.4 1.8E+02 0.0038 27.2 6.0 19 466-484 186-204 (247)
489 PRK12357 glutaminase; Reviewed 25.9 6.3E+02 0.014 24.6 9.6 15 249-263 96-110 (326)
490 PF10516 SHNi-TPR: SHNi-TPR; 25.7 1.6E+02 0.0034 18.0 3.6 26 561-586 2-27 (38)
491 PRK11639 zinc uptake transcrip 25.6 2.8E+02 0.006 24.0 6.6 58 451-510 19-76 (169)
492 PF12796 Ank_2: Ankyrin repeat 25.5 2.2E+02 0.0048 20.9 5.5 21 98-118 29-49 (89)
493 PF14669 Asp_Glu_race_2: Putat 24.9 4.9E+02 0.011 23.1 13.7 57 319-386 105-161 (233)
494 KOG0991 Replication factor C, 24.7 5.6E+02 0.012 23.7 13.3 89 398-490 136-224 (333)
495 PF05053 Menin: Menin; InterP 24.0 2.6E+02 0.0056 29.3 6.8 26 494-519 318-343 (618)
496 COG2976 Uncharacterized protei 23.8 5.3E+02 0.011 23.0 12.7 50 403-452 137-188 (207)
497 PF10255 Paf67: RNA polymerase 23.8 4.4E+02 0.0096 26.7 8.4 55 532-586 128-190 (404)
498 PF09454 Vps23_core: Vps23 cor 23.6 1.9E+02 0.0042 20.2 4.2 46 421-467 6-51 (65)
499 KOG1497 COP9 signalosome, subu 23.5 6.9E+02 0.015 24.3 12.2 107 196-302 146-269 (399)
500 PF02184 HAT: HAT (Half-A-TPR) 23.4 1.4E+02 0.0029 17.5 2.8 21 439-461 3-23 (32)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-109 Score=915.81 Aligned_cols=640 Identities=34% Similarity=0.625 Sum_probs=628.9
Q ss_pred CcccccCCChhHHHHHhhcCCCCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHh
Q 006364 1 MNMYCKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGL 77 (648)
Q Consensus 1 i~~~~~~g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 77 (648)
|++|+++|++++|+++|++|++||+++||+||.+|++.+ +|+++|++|...|+.||.+||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 357899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCC
Q 006364 78 QLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRL 157 (648)
Q Consensus 78 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p 157 (648)
++|..+.+.|+.||+.++|+||++|+++|+++.|.++|++|++||.++||++|.+|++.| .+++|+++|.+|.+.|+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG-ECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc----
Q 006364 158 DHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---- 233 (648)
Q Consensus 158 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---- 233 (648)
|..||+.+|.+|++.|+++.|.+++..+.+.|+.||..+||+||.+|+++|++++|.++|+.|..||+++||++|.
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 234 -MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 234 -g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
|++++|+++|++|...|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..++++||++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCch
Q 006364 313 FDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDP 392 (648)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 392 (648)
|++|.++|+++||++|.+|+++|+.++|+.+|++|..+++||..||++++.+|++.| .++.+.++|..+.+.|+.++.
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g--~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG--ALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc--hHHHhHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999998899999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
.++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||..||+.++.+|++.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADAL 552 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 552 (648)
++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999997889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHH
Q 006364 553 MKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLG 632 (648)
Q Consensus 553 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 632 (648)
.+++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||+++ +++|.|++||.+||+.++||..|+.|.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~--~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK--GKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC--CEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhc-------------cchhhhhhhc
Q 006364 633 SEMK-------------YLNSKRERAI 646 (648)
Q Consensus 633 ~~~~-------------~~~~~~~~~~ 646 (648)
.+|+ .++|+||+.+
T Consensus 762 ~~~~~~g~~~~~~~~~~~~~~~k~~~~ 788 (857)
T PLN03077 762 EKMKASGLAGSESSSMDEIEVSKDDIF 788 (857)
T ss_pred HHHHhCCcCCCcchhccccHHHHHHHH
Confidence 9987 2467777664
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-86 Score=715.29 Aligned_cols=522 Identities=29% Similarity=0.501 Sum_probs=510.3
Q ss_pred CCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHH
Q 006364 120 NKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKG-LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGN 198 (648)
Q Consensus 120 ~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (648)
.++..+|+.+|.++++.| .+++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 84 ~~~~~~~~~~i~~l~~~g-~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACG-RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 357789999999999999 9999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHH
Q 006364 199 VLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKE 273 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 273 (648)
.|+++|+++|++++|.++|++|++||+++||+++. |++++|+++|++|...|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCC
Q 006364 274 GRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESK 352 (648)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 352 (648)
+.+++..+.+.|+.||..++++||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+ ++.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 006364 353 PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISA 432 (648)
Q Consensus 353 p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 432 (648)
||..||++++.+|++.+ .++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+
T Consensus 323 pd~~t~~~ll~a~~~~g--~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLA--LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhcc--chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++.+++|++..+|..|+++|++.|+|++|.+++++|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc--------------cchhhhhhhc
Q 006364 593 KEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK--------------YLNSKRERAI 646 (648)
Q Consensus 593 ~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~--------------~~~~~~~~~~ 646 (648)
|.||+|||+++ +++|.|++||.+||+.++||+.|++|..+|+ +++++|++.+
T Consensus 561 k~~g~s~i~~~--~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 561 MHPACTWIEVK--KQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSG 626 (697)
T ss_pred cCCCeeEEEEC--CeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHH
Confidence 99999999999 9999999999999999999999999999987 4567777654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-83 Score=710.78 Aligned_cols=567 Identities=28% Similarity=0.439 Sum_probs=546.6
Q ss_pred CCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHH
Q 006364 22 NPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNAL 98 (648)
Q Consensus 22 ~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (648)
.|+..++|.+|.+|++.+ +|+.+|+.|.+.|+.|+..+|..++.+|...+.++.+.+++..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 467788999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHH
Q 006364 99 ITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELG 178 (648)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (648)
+++|+++|+++.|.++|++|++||+++||++|.+|++.| .+++|+++|++|...|+.||..||+++|++|+..++++.+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCC
Q 006364 179 KQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCP 253 (648)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p 253 (648)
.+++..+.+.|+.||..++|+||.+|+++|++++|.++|++|+.+|+++||++|. |++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQ 333 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 333 (648)
|..||+.++.+|++.|+++.|.+++..+.+.|+.||..+|++||.+|+++|++++|.++|++|..+|+++||++|.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 334 NGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
.|++++|+++|++|.+ ++.||..||++++.+|++.| +++.+.+++..+.+.|+.|+..++++|+++|+++|++++|.
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g--~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLG--DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc--hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999 99999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC
Q 006364 413 RVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 492 (648)
++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.|
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCc
Confidence 999999999999999999999999999999999999986 59999999999999999999999999999999877 9999
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKME-PAGSGSYVLMSNLYA 571 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~ 571 (648)
+..++++|+++|+++|++++|.++|+.+ +||..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 9999999999999999999999999988 7889999999999999999999999999988765 456788888888999
Q ss_pred hcCCcHHHHHHHHHHh-hCCCccCC
Q 006364 572 EKGDWEMVAILRKGMK-SKGVRKEV 595 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~-~~~~~~~~ 595 (648)
+.|++++|.++++.|+ +.|+.|+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999998 56877764
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-69 Score=585.46 Aligned_cols=464 Identities=23% Similarity=0.390 Sum_probs=449.2
Q ss_pred CCcchHHHHHHhhccCC---hHHHHHHHHHhCC-CCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHH
Q 006364 23 PDIVSWNTVLSGFEKSD---DALSFALRMNLIG-VVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNAL 98 (648)
Q Consensus 23 p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (648)
++..+|+++|.+|.+.+ +|+++|..|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 56679999999999988 9999999999764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHH
Q 006364 99 ITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELG 178 (648)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 178 (648)
+++|+++|+++.|.++|++|++||.++||++|.+|++.| ++++|+++|++|.+.|+.||..||+.++++|++.|+.+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCC
Q 006364 179 KQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCP 253 (648)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p 253 (648)
.+++..+.+.|+.+|..+||+||++|+++|++++|.++|+.|+++|+++||++|. |+.++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQ 333 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 333 (648)
|..||++++.+|++.|+++.|.+++..|.+.|++||..++++||++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH-hCCCCchhHHHHHHHHHhhcCCHHHH
Q 006364 334 NGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK-VGLDSDPIVGSALLDMYGKRGSIFES 411 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 411 (648)
.|+.++|+++|++|.. |+.||..||++++.+|++.| ..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g--~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG--LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999999 99999999999999999999 99999999999986 69999999999999999999999999
Q ss_pred HHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 412 QRVFNETQ-EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
.+++++|. .|+..+|++|+.+|..+|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-G 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999986 57999999999999999999999999999975 5665 679999999999999999999999999877 7
Q ss_pred CCC
Q 006364 490 IEP 492 (648)
Q Consensus 490 ~~p 492 (648)
+.+
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 754
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-70 Score=587.33 Aligned_cols=496 Identities=16% Similarity=0.236 Sum_probs=453.7
Q ss_pred cccccCCChhHHHHHhhcCCCCCcc-----hHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccCh
Q 006364 2 NMYCKSGQFDKALCIFNNLNNPDIV-----SWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGF 73 (648)
Q Consensus 2 ~~~~~~g~~~~A~~~f~~~~~p~~~-----~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 73 (648)
+.|++.|++++|+++|+.|++++.. .++.++.+|.+.+ +|+.+|+.|.. ||..+|+.+|.+|++.|++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 3567889999999999999876554 4556777788887 89999998875 9999999999999999999
Q ss_pred hhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC----CCCcchHHHHHHHHHcCCCChHHHHHHHHH
Q 006364 74 LFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP----NKDSVSWNAILSGYTQDGDYGVEAILALIE 149 (648)
Q Consensus 74 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~~a~~~~~~ 149 (648)
+.|.++|+.|.+.|+.||..+|+.||++|+++|+++.|.++|++|. .||.++||+||.+|++.| ++++|+++|.+
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~ 532 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 489999999999999999 99999999999
Q ss_pred HHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHH--hcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC----C
Q 006364 150 MMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIK--MGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD----R 223 (648)
Q Consensus 150 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~ 223 (648)
|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|+.|.+ |
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 67999999999999999999999999999999986 5
Q ss_pred CchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 224 NVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298 (648)
Q Consensus 224 ~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 298 (648)
+..+||++|. |++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++||.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6799999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHhhcC----CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhH
Q 006364 299 MYARFESMQDSEKVFDELS----CREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISL 373 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~ 373 (648)
+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.. ++.||..||++++.+|++.| ++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G--~l 770 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD--DA 770 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC--CH
Confidence 9999999999999999995 68999999999999999999999999999999 99999999999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHH------HhhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 374 KHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV------FNETQEKSEFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
+.|.++|..|.+.|+.||..+|++++.+|.+ ++++|.++ |+.+...+...| .+.|+.+|+
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~~Al~lf~ 836 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW------------TSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch------------HHHHHHHHH
Confidence 9999999999999999999999999977542 34444444 333222233333 456999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
+|.+.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999998888888999888888888554 6777899999999998543 478999999986
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-68 Score=576.77 Aligned_cols=512 Identities=17% Similarity=0.183 Sum_probs=473.9
Q ss_pred CCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCC-CCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHH
Q 006364 53 VVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGL-DSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILS 131 (648)
Q Consensus 53 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 131 (648)
..++...|..++..|++.|+++.|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788899999999999999999999999999995 5778888899999999999999999999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 006364 132 GYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTG 211 (648)
Q Consensus 132 ~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 211 (648)
+|++.| +.+.|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++
T Consensus 446 a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHH--hcCCCC
Q 006364 212 DANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIK--TNFLSE 289 (648)
Q Consensus 212 ~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 289 (648)
+|.+ +|++|...|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||
T Consensus 525 eAl~--------------------------lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 525 KAFG--------------------------AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHHH--------------------------HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 6555 456777889999999999999999999999999999999987 689999
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCCC----CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHH
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSCR----EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNA 364 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a 364 (648)
..+|++||.+|+++|++++|.++|+.|.+. +..+||++|.+|++.|++++|+++|++|.. |+.||..||+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999754 568999999999999999999999999999 999999999999999
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ----EKSEFAWTAIISALARHGDYE 440 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~ 440 (648)
|++.| +.++|.+++..|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+++
T Consensus 659 ~~k~G--~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 659 AGHAG--DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999 999999999999999999999999999999999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh----hcC--------
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLG----RVG-------- 508 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----~~g-------- 508 (648)
+|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++..+. +++
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999877 99999999999987643 222
Q ss_pred -----------CHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHhc
Q 006364 509 -----------RLEEAEELVGQIP---GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM-EPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 509 -----------~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~ 573 (648)
..++|..+|++|. ..||..+|+.++.++...+..+.+..+++.+... .+++..+|..|++.+.+.
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 2467999999987 5699999999998777888888888888876543 467788999999987332
Q ss_pred CCcHHHHHHHHHHhhCCCccCCc
Q 006364 574 GDWEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 574 g~~~~a~~~~~~m~~~~~~~~~~ 596 (648)
.++|..++++|...|+.|+..
T Consensus 896 --~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 --DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred --hHHHHHHHHHHHHcCCCCCcc
Confidence 358999999999999998864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-32 Score=312.25 Aligned_cols=533 Identities=11% Similarity=0.018 Sum_probs=282.9
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+|...+..+.... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+.+.
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4444444444332 1233444444444445555555555555444432 1223334444444445555555555544433
Q ss_pred CC---CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcch
Q 006364 120 NK---DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSV 196 (648)
Q Consensus 120 ~~---~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (648)
+. +...+..++..+.+.| ++++|..++..+... ..++..++..+...+...|+++.|.+.+..+.+.. +.+...
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 501 (899)
T TIGR02917 425 QLDPELGRADLLLILSYLRSG-QFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPA 501 (899)
T ss_pred hhCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHH
Confidence 21 1223334444555555 555555555555442 12334455555555555555555555555555432 223334
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCC---CchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 006364 197 GNVLMSTYSKCEVTGDANKVFRRMHDR---NVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIG 268 (648)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 268 (648)
+..+...+...|++++|.+.|+.+... +...+..+.. |+.++|...|+++...+ +.+...+..+...+...
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 445555555555555555555554331 2222222222 55555666555554432 12334444555555566
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHH
Q 006364 269 NLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFF 345 (648)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (648)
|+++.|..+++.+.+.. +.+..++..+...|...|++++|...|+.+.+ .+...|..+...+...|++++|...|+
T Consensus 581 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 581 GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665555432 34445555666666666666666666655432 233455555556666666666666666
Q ss_pred HhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CCh
Q 006364 346 GVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--KSE 423 (648)
Q Consensus 346 ~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 423 (648)
++....+.+..++..+...+...| +.+++..++..+.+.+ +.+...+..+...|.+.|++++|.+.|..+.. |+.
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAK--RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 655544444555555666666666 6666666666655543 33444555556666666666666666665442 333
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
.++..++.++.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|.++|+.+.+. .|+ ...+..+..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~ 812 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAW 812 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 45555566666666666666666666553 2334455555556666666666666666666533 333 555666666
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 580 (648)
.+...|+ .+|+..++++. .+.++.++..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666 55666665543 22334455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 006364 581 ILRKGMK 587 (648)
Q Consensus 581 ~~~~~m~ 587 (648)
+++++|.
T Consensus 892 ~~~~~~~ 898 (899)
T TIGR02917 892 KELDKLL 898 (899)
T ss_pred HHHHHHh
Confidence 6666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-31 Score=302.47 Aligned_cols=517 Identities=12% Similarity=0.061 Sum_probs=345.7
Q ss_pred hHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHc
Q 006364 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQ 135 (648)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 135 (648)
.+..+...+...|+++.|...+..+.... +.+...+..+...+.+.|++++|.++|+++.+ .+...|..+...+..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 33444444445555555555555544432 22344455555555555555555555554432 133344444455555
Q ss_pred CCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 006364 136 DGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANK 215 (648)
Q Consensus 136 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 215 (648)
.| ++++|...|..+...... +......++..+.+.|+++.|..++..+.+. .+.+..++..+...|...|++++|..
T Consensus 410 ~~-~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 410 QG-DPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred CC-ChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 55 555555555555443321 1223334445556666666666666666543 24455667777777777777777777
Q ss_pred HHhcCCCCC---chhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 006364 216 VFRRMHDRN---VISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFL 287 (648)
Q Consensus 216 ~~~~~~~~~---~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (648)
.|+.+.+.+ ...+..+.. |++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +
T Consensus 487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 777664421 222222211 77777777777776643 2345566667777777777777777777776654 3
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 006364 288 SEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNA 364 (648)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a 364 (648)
.+...+..++..|.+.|++++|..+++.+.. .+...|..+..++...|++++|+..|+++....+.+...+..+...
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4555666777777778888888777777653 3456777777788888888888888887776445566667777777
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYES 441 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 441 (648)
+...+ +.+.|..++..+.+.. +.+...+..+...+...|++++|.++++.+.+ .+...|..+...+...|++++
T Consensus 645 ~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 645 YAVMK--NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHcC--CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 77777 7788888877777643 33566777777888888888888888877754 255667777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 442 VMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
|+..|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .|+ ...+..+...|.+.|++++|...++++
T Consensus 722 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 88888888774 455566777777888888888888888887654 444 777888888888888888888888876
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 521 P--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 521 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
. .++++.++..+...+...|+ .+|...++++.+..|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5 44567778888888888888 778888888888888888888888888888888888888888877644
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.1e-23 Score=235.63 Aligned_cols=565 Identities=12% Similarity=0.063 Sum_probs=417.6
Q ss_pred cccCCChhHHHHHhhcCCC--CCcchHH-----------------HHHHhhccCC---hHHHHHHHHHhCCCCCChh-hH
Q 006364 4 YCKSGQFDKALCIFNNLNN--PDIVSWN-----------------TVLSGFEKSD---DALSFALRMNLIGVVFDAV-TY 60 (648)
Q Consensus 4 ~~~~g~~~~A~~~f~~~~~--p~~~~~~-----------------~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~-~~ 60 (648)
+.+.|+.++|.+.+++..+ |+...+- .....+.+.+ +|...|+.+..... |+.. ..
T Consensus 72 ~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~ 150 (1157)
T PRK11447 72 LLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAV 150 (1157)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHH
Confidence 4678999999999999864 5443321 1112344445 89999999886543 3322 22
Q ss_pred HHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCc------chH--------
Q 006364 61 STALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDS------VSW-------- 126 (648)
Q Consensus 61 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~-------- 126 (648)
..........|+.++|...++.+.+.. +.++..+..+...+...|+.++|...|+++..... ..|
T Consensus 151 ~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 151 EYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMP 229 (1157)
T ss_pred HHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccC
Confidence 122222335689999999999999875 44567788888999999999999999998754211 111
Q ss_pred ---------HHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchH
Q 006364 127 ---------NAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVG 197 (648)
Q Consensus 127 ---------~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 197 (648)
...+..+-... ....|...+..+......|+... ...-..+...|++++|...++..++.. +.+...+
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~-~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGD-SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred CChhhHHHHHHHHHHCCCch-HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 11111112222 33455555555544333333222 122345667899999999999999864 3467888
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCC--CCc---hhhHHH----------------h-cCChhhHHHHHHHHHHCCCCCCh
Q 006364 198 NVLMSTYSKCEVTGDANKVFRRMHD--RNV---ISWTTM----------------I-SMNREDAVSLFKEMRLDGVCPND 255 (648)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----------------i-~g~~~~a~~~~~~m~~~g~~p~~ 255 (648)
..|...|.+.|++++|+..|++..+ |+. ..|..+ + .|++++|...|++..... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 8999999999999999999988765 321 112111 1 189999999999998863 2245
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC------------ccc
Q 006364 256 VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE------------IIS 323 (648)
Q Consensus 256 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------~~~ 323 (648)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. .++.++|..+++.+.... ...
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 566778888999999999999999999864 344556667777774 467899999998875321 123
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 006364 324 WNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG 403 (648)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (648)
+..+...+...|++++|++.|++..+..+-+...+..+...+.+.| +.++|...++.+.+... .++..+..+...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G--~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG--QRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 5556778889999999999999998855556777888889999999 99999999999887543 34555555666778
Q ss_pred hcCCHHHHHHHHhhcCCCC----h---------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 404 KRGSIFESQRVFNETQEKS----E---------FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
+.|+.++|...++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 8999999999999876421 1 1123456778899999999999872 34455677788888999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-G-PGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|++++|+..|+...+. .|+ ...+..++..|...|++++|++.++.... . .+...+..+..++...|+.++|.+
T Consensus 616 ~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999754 676 88999999999999999999999998762 2 456677888889999999999999
Q ss_pred HHHHHHhcCCCCch------hHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 548 IADALMKMEPAGSG------SYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 548 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+++++++..|+++. .+..++.++...|++++|...+++..
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988766543 66778999999999999999988774
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=9.5e-22 Score=223.59 Aligned_cols=570 Identities=9% Similarity=0.002 Sum_probs=392.2
Q ss_pred ccCCChhHHHHHhhcCC--CC-CcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhH-----------------H
Q 006364 5 CKSGQFDKALCIFNNLN--NP-DIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTY-----------------S 61 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~--~p-~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~-----------------~ 61 (648)
...++.+.|.+.++++. .| |...+..+...+.+.+ +|...++++.+.. |+...+ .
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHH
Confidence 34677888888888765 34 4455666666666666 7888888887754 322222 2
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHH-HHHHHhCCChhHHHHHhccCCC--C-CcchHHHHHHHHHcCC
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNAL-ITMYSRWGRLVEARRVFDEMPN--K-DSVSWNAILSGYTQDG 137 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 137 (648)
.+.+.+...|++++|.+.++.+.+.+ +|+....... .......|+.++|++.|+++.+ | +...+..+-..+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 23345678889999999999888654 3332211111 1222345888999999988875 3 4456777778888888
Q ss_pred CChHHHHHHHHHHHHCCCC----------------CCh---hhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHH
Q 006364 138 DYGVEAILALIEMMRKGLR----------------LDH---VSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGN 198 (648)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~----------------p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (648)
+.++|+..++++...... ++. ..+...+..+-.....+.+...+....+....|+.. ..
T Consensus 196 -~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~ 273 (1157)
T PRK11447 196 -RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-AR 273 (1157)
T ss_pred -CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HH
Confidence 888999999888653210 000 012222222233333444555555444333233321 12
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCC--C-CchhhHHHhc-----CChhhHHHHHHHHHHCCCCC-ChhhHH----------
Q 006364 199 VLMSTYSKCEVTGDANKVFRRMHD--R-NVISWTTMIS-----MNREDAVSLFKEMRLDGVCP-NDVTFI---------- 259 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p-~~~~~~---------- 259 (648)
.+-..+...|++++|...|+.... | +...+..+-. |++++|...|++........ ....+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 334567788999999999988765 3 3333332222 89999999999887653221 111111
Q ss_pred --HHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhc
Q 006364 260 --GLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQN 334 (648)
Q Consensus 260 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 334 (648)
..-..+...|++++|...++.+.+.. +.+...+..+..+|...|++++|++.|++..+. +...+..+...|. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 12335678899999999999988864 445666777888999999999999999887643 3445666666664 4
Q ss_pred CCcHHHHHHHHHhHhCCC---------CCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 006364 335 GLSLAAVQAFFGVIKESK---------PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR 405 (648)
Q Consensus 335 g~~~~A~~~~~~m~~~~~---------p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (648)
++.++|+..++.+....+ .....+..+...+...+ +.++|...++...+... .++..+..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 578889888876543110 01123344556667778 99999999999887653 3566777889999999
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHhcccCc
Q 006364 406 GSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI---------TFLSVLTVCGRNGM 473 (648)
Q Consensus 406 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~ 473 (648)
|++++|...|+.+.+ | +...+..+...+...++.++|+..++++......++.. .+......+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999998743 3 45556666666778899999999988765432222221 12345567888999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 474 IHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
.++|..+++. ..++...+..+...+.+.|++++|++.+++.. .+.+...+..++..+...|+.++|++.+++
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 12346677889999999999999999999876 345678899999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 552 LMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 552 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
+.+..|+++..+..++.++...|++++|.++++++....
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999887654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1e-19 Score=197.49 Aligned_cols=547 Identities=10% Similarity=0.014 Sum_probs=292.6
Q ss_pred cCCChhHHHHHhhcCCC--CC-cchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHH
Q 006364 6 KSGQFDKALCIFNNLNN--PD-IVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQL 79 (648)
Q Consensus 6 ~~g~~~~A~~~f~~~~~--p~-~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 79 (648)
..|++++|...|++..+ |+ ...+..+...|.+.+ +|...+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 35999999999998763 54 556788888888888 899998888875 34555554544333 888899999
Q ss_pred HHHHHHhCCCCCcchHHHHHHH--------HHhCCChhHHHHHhccCCCCC--cchHHHH-HHHHHcCCCChHHHHHHHH
Q 006364 80 HSLIVKFGLDSEVYVGNALITM--------YSRWGRLVEARRVFDEMPNKD--SVSWNAI-LSGYTQDGDYGVEAILALI 148 (648)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~~a~~~~~ 148 (648)
++.+.+.. +.+..++..+... |.+.+....+++ .....|+ ....... ...|.+.+ ++++|+.++.
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~-dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK-QWSQADTLYN 206 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 99999875 3445555555555 777766666666 3333343 3334444 78999999 9999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhcC-CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC-----
Q 006364 149 EMMRKGLRLDHVSFTSAASACGH-EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD----- 222 (648)
Q Consensus 149 ~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 222 (648)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..|+.+...+...|.+.|+.++|.+++++++.
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999976433 3334455556666 355 666666442 3446888899999999999999999999999875
Q ss_pred CCchhhHHHhc-----------------------------------CChhhHHHHHHHHHHCCCCCChhhHHH-------
Q 006364 223 RNVISWTTMIS-----------------------------------MNREDAVSLFKEMRLDGVCPNDVTFIG------- 260 (648)
Q Consensus 223 ~~~~~~~~li~-----------------------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~------- 260 (648)
|+..+|--.+. +.++-+.++ ..+.|.....-.
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHHHHHHhhccc
Confidence 33333332222 111111111 113332222100
Q ss_pred ---------------------------HHHHHhcCCchHHHHHHHHHHHHh-c-CCCCchhHHHHHHHHHhcCCh---HH
Q 006364 261 ---------------------------LIHAISIGNLVKEGRMIHGLCIKT-N-FLSEPSVCNCLITMYARFESM---QD 308 (648)
Q Consensus 261 ---------------------------ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~---~~ 308 (648)
+---....|+.++|.+++...... + -..+....+-|+..|.+.+.+ .+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 111112334444444444444331 0 111222333445555554441 11
Q ss_pred HHHHHh-------------------------hcCC---C--CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHH
Q 006364 309 SEKVFD-------------------------ELSC---R--EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF 358 (648)
Q Consensus 309 a~~~~~-------------------------~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~ 358 (648)
+..+-. .... . +...|..+..++.. ++.++|+..|.+..... |+....
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~ 512 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQH 512 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHH
Confidence 211100 0000 1 22334444444443 45555555554444311 232222
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHH---HHHHHHh
Q 006364 359 GSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTA---IISALAR 435 (648)
Q Consensus 359 ~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~ 435 (648)
..+..++...| +.++|...++.+... +|+...+..+...+.+.|++++|...|+...+.++..++. +...+..
T Consensus 513 L~lA~al~~~G--r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 513 RAVAYQAYQVE--DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 22223333444 555555555554332 2222233344445555555555555555444322221221 1222223
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
.|++++|+..|++..+ ..|+...+..+..++.+.|++++|+..++.... ..|+ ...+..+...+...|++++|.
T Consensus 589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3555555555555554 234444555555555555555555555555542 2444 445555555555555555555
Q ss_pred HHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 515 ELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 515 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
..+++.. .+.++..+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.+.+-++
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555433 222344555555555555555555555555555555555555555555555555555555444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.8e-18 Score=187.88 Aligned_cols=526 Identities=7% Similarity=-0.083 Sum_probs=366.9
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+|+..|++..+.... +...+..|.+.+...|+.++|....+..++.. |+...+..++..+ ++.++|..+++++.
T Consensus 62 ~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~ 135 (987)
T PRK09782 62 TAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence 899999998876544 47788889999999999999999999998874 4444444434333 89999999999987
Q ss_pred C--CC-cchHHHHHHH--------HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHhcCCCChhHHHHHHHHHHH
Q 006364 120 N--KD-SVSWNAILSG--------YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSA-ASACGHEKNLELGKQIHGVSIK 187 (648)
Q Consensus 120 ~--~~-~~~~~~li~~--------~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~ 187 (648)
. |+ ...+..+... |.+.+ +|.+.++ .......|+..+.... .+.|...++++.+..++..+.+
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~e----qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQLP----VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhHH----HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 5 43 2333333333 55544 5555555 4443445556655555 8899999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHh-CCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCC-CChhhHHH
Q 006364 188 MGYGTHVSVGNVLMSTYSK-CEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVC-PNDVTFIG 260 (648)
Q Consensus 188 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~-p~~~~~~~ 260 (648)
.+. .+..-...|-.+|.. .++ +++..+++...+.++..+..+.. |+.++|..+++++...-.. |+..++..
T Consensus 211 ~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 211 QNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred cCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 873 345556667778887 477 88888877655556666666555 9999999999997654322 43333333
Q ss_pred H------------------------------HHHHhcCCchHHHHHHHHH--------HHHhcC----------------
Q 006364 261 L------------------------------IHAISIGNLVKEGRMIHGL--------CIKTNF---------------- 286 (648)
Q Consensus 261 l------------------------------l~~~~~~~~~~~a~~~~~~--------~~~~~~---------------- 286 (648)
+ +..+.+.+.++.++++... +.-.+.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 2 2333444444444433210 000000
Q ss_pred ----CCCchhHHHHHHHHHhcCChHHHHHHHhhcCC-C-Cc----ccHHHHHHHHHhcCC---cHHHHHH----------
Q 006364 287 ----LSEPSVCNCLITMYARFESMQDSEKVFDELSC-R-EI----ISWNALISGYAQNGL---SLAAVQA---------- 343 (648)
Q Consensus 287 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-~~----~~~~~li~~~~~~g~---~~~A~~~---------- 343 (648)
+-+....--+.....+.|+.++|..+|...-. + +. ..-+-++..|.+.+. ..+++.+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 11222222233334567888888888877654 1 11 233356666666654 3333222
Q ss_pred ------------HHHhHh--CC-CC--CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 344 ------------FFGVIK--ES-KP--NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 344 ------------~~~m~~--~~-~p--~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
+..... +. ++ +...+..+..++.. + ..++|...+....... |+......+...+...|
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~--~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T--LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE 523 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C--CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC
Confidence 222222 22 33 55666666666655 5 7777888777776554 44444444555557899
Q ss_pred CHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQE--KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
++++|...|+.+.. ++...+..+...+.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...+++
T Consensus 524 r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999997654 445567778888999999999999999998853 443 3333444455667999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 484 MLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 484 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
..+ +.|+...|..+..++.+.|++++|...+++.. .+.+...+..+..++...|+.++|...++++++..|+++.
T Consensus 602 AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 602 SLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 974 47888899999999999999999999999876 3456778888889999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+..++.+|...|++++|...+++..+
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999987764
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=7.3e-20 Score=176.12 Aligned_cols=448 Identities=13% Similarity=0.097 Sum_probs=319.9
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcc-h-HHHHH-HHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcC
Q 006364 95 GNALITMYSRWGRLVEARRVFDEMPNKDSV-S-WNAIL-SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGH 171 (648)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~li-~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (648)
...|..-..+.|++.+|++.-...-+.|.. + -..++ ..+.+.. ..+....--....+. ..--..+|..+-+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~-r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS-RLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc-chhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 334555555667777777765555442221 1 11222 2333333 443333222222221 12234567667777777
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCC
Q 006364 172 EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGV 251 (648)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~ 251 (648)
.|+++.|..++..+++.. +..+..|..+..++...|+.+.|...|....+ +
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq----------------------------l 179 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ----------------------------L 179 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----------------------------c
Confidence 777777777777776653 22455666666666777766666666544433 2
Q ss_pred CCChhhHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHH
Q 006364 252 CPNDVTFIGLIHA-ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI---ISWNAL 327 (648)
Q Consensus 252 ~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l 327 (648)
.|+.....+-+.- ....|.+++|..-+-+.++.. +-=...|+.|...+...|++..|+..|++..+-|+ ..|-.|
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL 258 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL 258 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH
Confidence 3443333322222 233566666666665555432 11234567777777778888888888877765443 567777
Q ss_pred HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGS 407 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (648)
...|...+.+++|+..|.+...-.+-....+..+...|...| .++.|...+++.+... +.-+..|+.|..++...|+
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG--~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQG--LLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccc--cHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence 888888888888888888777644556677777777788888 8889988888887654 2346778899999999999
Q ss_pred HHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 408 IFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 408 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
+.+|.+.+.+... | ..-+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-..|++++|+..|++
T Consensus 336 V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 9999999987764 3 456888999999999999999999999887 6676 46788999999999999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.. .|.|+ ...|+.|...|-..|+.+.|.+.+.+.. ..| -....+.|...+...|++.+|...|+.++++.|+.+
T Consensus 414 al---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 414 AL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 86 67999 9999999999999999999999998865 444 466889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCcHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
.+|..++.++---.+|.+-.+.
T Consensus 491 dA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 491 DAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred hhhhHHHHHHHHHhcccchHHH
Confidence 9999999998888888774333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.8e-18 Score=164.48 Aligned_cols=422 Identities=11% Similarity=0.104 Sum_probs=317.9
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006364 126 WNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYS 205 (648)
Q Consensus 126 ~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 205 (648)
...+.....+.| ++.+|.+.-...-..+. .+..+...+-..+.+..+++...+--....+.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~g-d~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGG-DYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhcc-CHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 455556666777 78777766554433321 112222222223444444444333222222211 223345555666666
Q ss_pred hCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006364 206 KCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKT 284 (648)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 284 (648)
..|++++|+.++ +.+.+ ++| ....|..+..++...|+.+.|.+.+...++.
T Consensus 128 erg~~~~al~~y--------------------------~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 128 ERGQLQDALALY--------------------------RAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HhchHHHHHHHH--------------------------HHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 666555555554 44444 244 4567888888999999999999999888775
Q ss_pred cCCCCch-hHHHHHHHHHhcCChHHHHHHHhhcCC--CC-cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 285 NFLSEPS-VCNCLITMYARFESMQDSEKVFDELSC--RE-IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 285 ~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
+ |+.. ..+.+.......|++.+|...+.+..+ |. .+.|+.|...+-..|+...|+..|++..+-.+--...|..
T Consensus 180 n--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 180 N--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred C--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 3 4433 334455566678999999888877653 33 3789999999999999999999999988733334556777
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCC
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHG 437 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 437 (648)
+-+.+...+ .++.|...+....... +.....+..+...|..+|.++-|+..+++..+ | -...|+.|..++-..|
T Consensus 258 LGnV~ke~~--~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 258 LGNVYKEAR--IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG 334 (966)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence 777777777 7888888777766543 23456777888889999999999999998765 3 4678999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
++.+|.+.|.+... +.|+ ....+.|...+...|.+++|..+|.... .+.|. ...++.|...|..+|++++|..
T Consensus 335 ~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 335 SVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred chHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 99999999999987 5566 4678899999999999999999999886 66898 8889999999999999999999
Q ss_pred HHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 516 LVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 516 ~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+++.. .+|+ ...++.+...+...|++..|.+.+.+++..+|.-+.++..|+.+|...|+..+|+.-+++..+
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 998865 5665 568999999999999999999999999999999999999999999999999999999987653
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.5e-18 Score=174.56 Aligned_cols=290 Identities=11% Similarity=0.161 Sum_probs=192.2
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC-------cccHHHHHHHHHhcCCcH
Q 006364 266 SIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE-------IISWNALISGYAQNGLSL 338 (648)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 338 (648)
...|+++.|...+..+.+.+ +.+..++..+...|...|++++|..+++.+.... ...+..+...|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44455555555555555542 2233345555555555555555555555443211 123444444555555555
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 339 AAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 339 ~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
+|+..|+++.+..++ +..+++.++..|.+.|++++|.+.++.+
T Consensus 125 ~A~~~~~~~l~~~~~-------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 125 RAEELFLQLVDEGDF-------------------------------------AEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHcCCcc-------------------------------------hHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 555555544432222 3444555555666666666666666555
Q ss_pred CCCC--------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC
Q 006364 419 QEKS--------EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI 490 (648)
Q Consensus 419 ~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 490 (648)
.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 4311 1134566777788888899998888888742 223556777778888899999999999988754
Q ss_pred CCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 491 EPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 491 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
.|+ ..++..++.+|.+.|++++|...++++. ..|+...+..++..+...|+++.|..+++++.+..|++.. +..+.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHH
Confidence 444 4667888899999999999999988865 4577677788888999999999999999999999888764 44444
Q ss_pred HHHHh---cCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 568 NLYAE---KGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 568 ~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
..+.. .|+.+++..++++|.+++++++|...
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 44442 56999999999999999999999744
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.4e-16 Score=170.31 Aligned_cols=419 Identities=11% Similarity=0.022 Sum_probs=277.3
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTY 204 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (648)
.+...-..+.+.| ++++|+..|.+... +.|+...|..+-.++.+.|+++.|...+...++.. +.+...+..+-.+|
T Consensus 129 ~~k~~G~~~~~~~-~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNK-DFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3445666778888 99999999998876 46787888888888999999999999999888764 33456778888889
Q ss_pred HhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006364 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKT 284 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 284 (648)
...|++++|...|......+.. +......++..+.. ..+........+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~l~----~~a~~~~~~~l~~ 253 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGF---------------------------RNEQSAQAVERLLK----KFAESKAKEILET 253 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---------------------------ccHHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 9999999888776543211100 00000000000000 0011111111111
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHHHHHH---HhcCCcHHHHHHHHHhHh-C-CCC-CH
Q 006364 285 NFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI---ISWNALISGY---AQNGLSLAAVQAFFGVIK-E-SKP-NA 355 (648)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~-~-~~p-~~ 355 (648)
. +++...+..+.. |...........-++...+.+. ..+..+...+ ...+++++|++.|++... + ..| +.
T Consensus 254 ~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 254 K-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred C-CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 1 111111111111 2111111111111111111111 1111111111 234677888888888776 3 233 34
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 006364 356 YTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISA 432 (648)
Q Consensus 356 ~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 432 (648)
..+..+...+...| +++.|...+....+.. +.....+..+...+...|++++|...|+...+ .+...|..+...
T Consensus 332 ~a~~~lg~~~~~~g--~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKG--KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666666666777 8888888888877653 22355677788888889999999999987653 357788899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
+...|++++|+..|++..+. .|+ ...+..+..++.+.|++++|+..|+...+. .|+ ...|..+..++...|++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 99999999999999999874 454 566777888889999999999999998754 565 78889999999999999
Q ss_pred HHHHHHHhhCC-CCCC-HH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 511 EEAEELVGQIP-GGPG-LS-------VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 511 ~~A~~~~~~~~-~~~~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
++|.+.+++.. ..|+ .. .++..+..+...|++++|...++++++++|++...+..++.+|...|++++|.+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 99999998754 2222 11 122222233446999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 006364 582 LRKGMKS 588 (648)
Q Consensus 582 ~~~~m~~ 588 (648)
.+++..+
T Consensus 564 ~~e~A~~ 570 (615)
T TIGR00990 564 LFERAAE 570 (615)
T ss_pred HHHHHHH
Confidence 9988754
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-17 Score=169.88 Aligned_cols=283 Identities=16% Similarity=0.111 Sum_probs=223.4
Q ss_pred CChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE---PSVCNCLITMYARFESMQDS 309 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 309 (648)
|++++|+..|.++... .| +..++..+...+...|+++.|..+++.+.+.+..++ ..++..+...|.+.|++++|
T Consensus 49 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 49 EQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred CChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999986 34 445788888899999999999999999887542222 24678889999999999999
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Q 006364 310 EKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK 385 (648)
Q Consensus 310 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~ 385 (648)
..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+ +..+....
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------------- 178 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------------- 178 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------------
Confidence 999999975 3557899999999999999999999998876 22111100
Q ss_pred hCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006364 386 VGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL 462 (648)
Q Consensus 386 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 462 (648)
....+..+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|+++|+++.+.+..+...++.
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 011234466667778888888888887653 2 45577888899999999999999999998753222246678
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH---
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRI--- 538 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~--- 538 (648)
.+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++. ..|+...++.++..+..
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 8889999999999999999998754 6776667889999999999999999998765 55888888888877664
Q ss_pred cCCHHHHHHHHHHHHh
Q 006364 539 HGNVEMGERIADALMK 554 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~ 554 (648)
.|+...+...++++.+
T Consensus 331 ~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 331 EGRAKESLLLLRDLVG 346 (389)
T ss_pred CccchhHHHHHHHHHH
Confidence 5588888888888875
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2e-15 Score=139.61 Aligned_cols=324 Identities=14% Similarity=0.117 Sum_probs=241.9
Q ss_pred cchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHh---HHHHHHHHhCCCCCcchHHHHH
Q 006364 25 IVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGL---QLHSLIVKFGLDSEVYVGNALI 99 (648)
Q Consensus 25 ~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~g~~~~~~~~~~li 99 (648)
+++=|.|+.-.++.. ++--+|+.|++.|+..+...-..|++.-+-.++-+-.. +-|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 456777777766666 88889999999998888777767766544332222222 2233333333 2223333
Q ss_pred HHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHH
Q 006364 100 TMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGK 179 (648)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 179 (648)
+.|++.+ -+|+..+ +...+|..||.|+|+.. ..+.|.+++++-.....+.+..+||.+|.+-+-. ..+
T Consensus 191 ----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred ----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 3454444 3444444 56689999999999999 9999999999999988999999999999875433 348
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHH
Q 006364 180 QIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFI 259 (648)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~ 259 (648)
++..+|....+.||..|+|+++.+..+.|+++.|.+. |++++.+|++-|+.|...+|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a----------------------alqil~EmKeiGVePsLsSyh 316 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA----------------------ALQILGEMKEIGVEPSLSSYH 316 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH----------------------HHHHHHHHHHhCCCcchhhHH
Confidence 8999999999999999999999999999999988765 678899999999999999999
Q ss_pred HHHHHHhcCCchHH-HHHHHHHHHH----hcCCC----CchhHHHHHHHHHhcCChHHHHHHHhhcCCC-----------
Q 006364 260 GLIHAISIGNLVKE-GRMIHGLCIK----TNFLS----EPSVCNCLITMYARFESMQDSEKVFDELSCR----------- 319 (648)
Q Consensus 260 ~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------- 319 (648)
.+|.-+++.++..+ +..++.++.. ..++| |...+..-+..|.+..+.+-|.++-.-....
T Consensus 317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~ 396 (625)
T KOG4422|consen 317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH 396 (625)
T ss_pred HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence 99999999888754 3334444332 23333 3445667788888888888888776555422
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
...-|..+....++....+.-+.+|+.|.. -.-|+..+...+++|....+ .++-..+++..++..|..
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~--~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN--RLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC--cchhHHHHHHHHHHhhhh
Confidence 113456677777888888888889998888 67888888888999888888 888888888888877644
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=3.9e-16 Score=166.23 Aligned_cols=317 Identities=10% Similarity=0.034 Sum_probs=237.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
|++++|..+++........+.. .+..+..++...|+++.|...++.+.+.. +.+...+..+...+...|++++|...+
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999999888876433333 33444456667899999999999888764 445667788888888999999999988
Q ss_pred hhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 314 DELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 314 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
++... .+...|..+...+...|++++|...++.+....+.+...+..+ ..+...| ++++|...+..+.+....+
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g--~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKS--RLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcC--CHHHHHHHHHHHHhcCCCc
Confidence 88753 2456788888889999999999998887766333333333333 3366677 8888888888877765444
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCC-HHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYES----VMNQFKEMENKGVRPD-SITFL 462 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~ 462 (648)
+......+...+.+.|++++|...|+...+ .+...+..+...+...|++++ |+..|++..+. .|+ ...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 445555667778888999999988887654 256678888888888888885 78888888874 444 56777
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHHc
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSV-LQSLLGACRIH 539 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~ 539 (648)
.+...+...|++++|+..++...+. .|+ ...+..+..+|.+.|++++|...++++. ..|+... +..+..++...
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 8888888889999999998888744 666 6677778888888999999988888765 3455433 33456678888
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 006364 540 GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~ 560 (648)
|+.++|...++++++..|++.
T Consensus 366 G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHhChhhc
Confidence 999999999999988888764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=1.5e-15 Score=165.29 Aligned_cols=403 Identities=9% Similarity=0.002 Sum_probs=229.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 006364 128 AILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 128 ~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (648)
-.+......| +.++|++++.+..... ..+...+..+..++...|++++|..++...++.. +.+...+..+..++...
T Consensus 20 d~~~ia~~~g-~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 20 DWLQIALWAG-QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3344445555 5666666666555411 1223335555555555566666666655555442 22233344444445555
Q ss_pred CChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 006364 208 EVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFL 287 (648)
Q Consensus 208 g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (648)
|++++|...++ +.... .|+...+..+..++...|+.+.|...++.+.+.. +
T Consensus 97 g~~~eA~~~l~--------------------------~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P 147 (765)
T PRK10049 97 GQYDEALVKAK--------------------------QLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-P 147 (765)
T ss_pred CCHHHHHHHHH--------------------------HHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 54444444433 22222 2322224455555566666666666666666543 2
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh--
Q 006364 288 SEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV-- 365 (648)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~-- 365 (648)
.+...+..+..++...|..+.|.+.++.... ++..... +. . .....++...
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~-l~-------~------------------~~~~~~~r~~~~ 200 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD-LE-------A------------------DAAAELVRLSFM 200 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH-HH-------H------------------HHHHHHHHhhcc
Confidence 2333444455555555666666666555443 1110000 00 0 0000011111
Q ss_pred ---ccCch-hhHHHHHHHHHHHHHh-CCCCchh-HH-HH---HHHHHhhcCCHHHHHHHHhhcCCCC--hh--HHHHHHH
Q 006364 366 ---GAAED-ISLKHGQRCHSHIIKV-GLDSDPI-VG-SA---LLDMYGKRGSIFESQRVFNETQEKS--EF--AWTAIIS 431 (648)
Q Consensus 366 ---~~~~~-~~~~~a~~~~~~~~~~-~~~~~~~-~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~ 431 (648)
...+. ...+.|...++.+.+. ...|+.. .+ .. .+..+...|++++|...|+.+.+.+ .. .--.+..
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~ 280 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVAS 280 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 01110 0124455555555543 1122211 11 11 1223446688888888888877532 11 1122466
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC----------CCCC---hH
Q 006364 432 ALARHGDYESVMNQFKEMENKGVRP---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH----------IEPS---PD 495 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~ 495 (648)
.|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 7888888888888888877632111 123455566677888888998888888865411 1122 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
.+..+...+...|++++|+++++++. .+.+...+..+...+...|+.+.|++.+++++++.|+++..+..++.++...
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 45667788888899999999988865 3455678888888888999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhC
Q 006364 574 GDWEMVAILRKGMKSK 589 (648)
Q Consensus 574 g~~~~a~~~~~~m~~~ 589 (648)
|+|++|..+++++.+.
T Consensus 441 ~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999988877653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.1e-15 Score=160.63 Aligned_cols=325 Identities=10% Similarity=-0.047 Sum_probs=242.1
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHH
Q 006364 256 VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYA 332 (648)
Q Consensus 256 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 332 (648)
.....++..+.+.|+++.|..++.........+ ......++.+....|+++.|...|+++... +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344556777788888888888888887765333 444455556667788888888888887532 4467777788888
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
..|++++|+..|++...-.+.+...+..+..++...| +.++|...+..+......+.. .+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g--~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD--KELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 8888889988888888755556677777888888888 888888888877765543333 23223 3467788888888
Q ss_pred HHHhhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH----HHHHHHHh
Q 006364 413 RVFNETQEK----SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHK----GRHLFDSM 484 (648)
Q Consensus 413 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m 484 (648)
..++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 888876543 23344555677888888888988888888742 2335666777788888888875 78888888
Q ss_pred HHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 485 LKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 485 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.+ +.|+ ...+..+...+.+.|++++|...+++.. .+.+...+..+..++...|++++|...++++.+.+|.++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 64 4676 7788888888888889888888888765 2344566777788888888898888888888888888877
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.+..++.++...|++++|...+++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777788888888888888888876544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.3e-14 Score=158.09 Aligned_cols=413 Identities=9% Similarity=0.004 Sum_probs=283.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC-hhhHHHH
Q 006364 90 SEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD-HVSFTSA 165 (648)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~l 165 (648)
-++....-.+......|+.++|++++.+... .+...+..+...+.+.| ++++|..+|++..+. .|+ ......+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3444555677788899999999999998764 34445888999999999 999999999998874 344 4556677
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHH
Q 006364 166 ASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKE 245 (648)
Q Consensus 166 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~ 245 (648)
...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++.+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----------------------- 144 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALP----------------------- 144 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------
Confidence 788899999999999999998873 34445 77888888888888877777655432
Q ss_pred HHHCCCCCCh-hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccH
Q 006364 246 MRLDGVCPND-VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISW 324 (648)
Q Consensus 246 m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (648)
..|+. ..+..+..++...+..+.|...++...+ .|+. ...+ ..+.+.......
T Consensus 145 -----~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~--~~~l--------~~~~~~~~~r~~-------- 198 (765)
T PRK10049 145 -----RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAE--KRDL--------EADAAAELVRLS-------- 198 (765)
T ss_pred -----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHH--HHHH--------HHHHHHHHHHhh--------
Confidence 23543 4445667777888999999888865543 2220 0000 000000000000
Q ss_pred HHHHHHHHhcCCc---HHHHHHHHHhHh--CCCCCHH-HHH----HHHHHhccCchhhHHHHHHHHHHHHHhCCC-Cchh
Q 006364 325 NALISGYAQNGLS---LAAVQAFFGVIK--ESKPNAY-TFG----SVLNAVGAAEDISLKHGQRCHSHIIKVGLD-SDPI 393 (648)
Q Consensus 325 ~~li~~~~~~g~~---~~A~~~~~~m~~--~~~p~~~-~~~----~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 393 (648)
+.......+++ ++|++.++.+.. ...|+.. .+. ..+.++...+ +.++|...|+.+.+.+.+ |+-
T Consensus 199 --~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 199 --FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred --cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHH-
Confidence 00001111122 556666666664 2222221 111 1123344556 777777777777766532 221
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-----------CC
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQEKS-------EFAWTAIISALARHGDYESVMNQFKEMENKG-----------VR 455 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~ 455 (648)
....+...|...|++++|+..|+.+.+.+ ...+..+..++...|++++|+..++++.... -.
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 22225667888888999988888765432 2345566778889999999999999888742 11
Q ss_pred CCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHH
Q 006364 456 PDS---ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG-LSVL 529 (648)
Q Consensus 456 p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~ 529 (648)
|+. ..+..+...+...|+.++|+++++++... .|+ ...+..+...+...|++++|++.+++.. ..|+ ...+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 332 23455667788999999999999999754 676 8889999999999999999999999876 3354 6677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
..++......|++++|+.+++.+++..|+++.+..
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 77888899999999999999999999999975543
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3e-14 Score=145.32 Aligned_cols=565 Identities=12% Similarity=0.078 Sum_probs=377.0
Q ss_pred hhHHHHHhhcCC--CCCcchHHHHHHh---hccCC--hHHHHHHHHHhC--CCCCChhhHHHHHHHhhcccChhhHhHHH
Q 006364 10 FDKALCIFNNLN--NPDIVSWNTVLSG---FEKSD--DALSFALRMNLI--GVVFDAVTYSTALSFCLDHEGFLFGLQLH 80 (648)
Q Consensus 10 ~~~A~~~f~~~~--~p~~~~~~~ll~~---~~~~~--~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 80 (648)
+++|.+.|.... .|+-... .+-.+ |.+.+ .|+.+|...... ..+||...- +-..+.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~-LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA-LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH-HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 477777777654 3443322 22222 23333 788888885543 344555321 112345778888888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHH---HhC---CChhHHHHHhccCC---CCCcchHHHHHHHHHcCCCChHHHHHHHHHHH
Q 006364 81 SLIVKFGLDSEVYVGNALITMY---SRW---GRLVEARRVFDEMP---NKDSVSWNAILSGYTQDGDYGVEAILALIEMM 151 (648)
Q Consensus 81 ~~~~~~g~~~~~~~~~~li~~~---~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~ 151 (648)
.+..... | ...++++... ... ..+..+..++...- ..|++..|.|-.-|.-.| ++..++.+...+.
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK-DYERVWHLAEHAI 297 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHH
Confidence 8887654 3 2333333211 112 23344444444332 257888888888888899 9999999998887
Q ss_pred HCCCC--CChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhH
Q 006364 152 RKGLR--LDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWT 229 (648)
Q Consensus 152 ~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 229 (648)
..... .-...|--+-+++-..|+++.|...|-...+..-...+..+-.|..+|.+.|+++.+...|+.+....+..+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 64311 1123466778888999999999999988776543333445567889999999999999999988763322222
Q ss_pred H--Hhc------C----ChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH----HHhcCCCCchhH
Q 006364 230 T--MIS------M----NREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLC----IKTNFLSEPSVC 293 (648)
Q Consensus 230 ~--li~------g----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~ 293 (648)
+ ++. + ..+.|..++.+....- ..|...|..+-..+-. ++...+...+... ...+-.+.+.+.
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2 222 1 3366666666655542 2355566555555544 3433335555443 445666888899
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC-------Cc-----c-cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR-------EI-----I-SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~-------~~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
|.+...+...|++..|...|+..... +. + +--.+...+-..++.+.|.+.|..+.+..+.-...|..
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylR 535 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLR 535 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHH
Confidence 99999999999999999999876422 21 1 12224455666778999999999988755444455555
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHh
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KSEFAWTAIISALAR 435 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 435 (648)
+....-..+ ...++...+....... ..++..++-+.+.|.+...+..|.+-|..+.+ +|+.+.-+|.+.|.+
T Consensus 536 l~~ma~~k~--~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 536 LGCMARDKN--NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred hhHHHHhcc--CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 542222234 6777777777766532 45666777777788888888888886654432 355555555554432
Q ss_pred ------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 436 ------------HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 436 ------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
.+..++|+++|.+.... -+-|...-+.+...++..|++.+|..+|.+..+.. .-...+|-.+..+
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHC 689 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHH
Confidence 24578899999988875 24456777778888899999999999999997652 2235678889999
Q ss_pred HhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc------
Q 006364 504 LGRVGRLEEAEELVGQIP----GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK------ 573 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 573 (648)
|..+|++..|+++|+... .+.+..+...|..++...|.+.+|.+....+....|.++..-..++-+..+.
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 999999999999988644 4467888999999999999999999999999999999988777776665442
Q ss_pred -------------CCcHHHHHHHHHHhhCC
Q 006364 574 -------------GDWEMVAILRKGMKSKG 590 (648)
Q Consensus 574 -------------g~~~~a~~~~~~m~~~~ 590 (648)
+..+.|.++|+.|...+
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566777777776544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=7.8e-14 Score=148.95 Aligned_cols=221 Identities=9% Similarity=0.016 Sum_probs=151.8
Q ss_pred cHHHHHHHHHhHh--CCCCCH-H----HHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 337 SLAAVQAFFGVIK--ESKPNA-Y----TFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 337 ~~~A~~~~~~m~~--~~~p~~-~----~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
.+.|+.-++.+.. +..|.. . ...-.+-++...+ +..++...++.+...+.+....+-.++.++|...++++
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~--r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH--QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 3456666666555 222322 1 2223455666777 78888888888888777766777788888888888888
Q ss_pred HHHHHHhhcCCC---------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHH
Q 006364 410 ESQRVFNETQEK---------SEFAWTAIISALARHGDYESVMNQFKEMENKGV-------------RPDSI-TFLSVLT 466 (648)
Q Consensus 410 ~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t~~~ll~ 466 (648)
+|..+|..+... +......|.-+|...+++++|..+++++.+.-. .||-. .+..+..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 888888876432 222346678888888888888888888876311 12222 2334455
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...|++.+|++.++.+... .|. ......+.+.+...|+..+|++.++... .+-+..+....+.+....+++.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 567788888888888888643 564 7777788888888888888888886644 3334555666777777788888
Q ss_pred HHHHHHHHHHhcCCCCchh
Q 006364 544 MGERIADALMKMEPAGSGS 562 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~ 562 (648)
+|+.+.+.+.+..|+++.+
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhhCCCchhH
Confidence 8888888888888887644
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=2.5e-14 Score=153.08 Aligned_cols=422 Identities=11% Similarity=0.017 Sum_probs=257.1
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcC
Q 006364 95 GNALITMYSRWGRLVEARRVFDEMPN--KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD-HVSFTSAASACGH 171 (648)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 171 (648)
+...-..|.+.|+++.|...|++... |+...|..+-.+|.+.| ++++|+..+....+. .|+ ...+..+-.++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALG-DWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 33456678888999999999988654 67778888888999999 999999999988874 344 4567777888899
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCC
Q 006364 172 EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGV 251 (648)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~ 251 (648)
.|++++|..-+..+...+-..+... ..++.-+........+...++.-+. +..++..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~-------------------- 264 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFV-------------------- 264 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHH--------------------
Confidence 9999999887766554432111111 1111111111111223333322211 11111100
Q ss_pred CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc-hhHHHHHHH---HHhcCChHHHHHHHhhcCCC------Cc
Q 006364 252 CPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP-SVCNCLITM---YARFESMQDSEKVFDELSCR------EI 321 (648)
Q Consensus 252 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~------~~ 321 (648)
......+ .......-+....+ ..++. ..+..+... ....+++++|.+.|+..... ..
T Consensus 265 -------~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 265 -------GNYLQSF----RPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred -------HHHHHHc----cCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 0000000 00000000000000 00000 000000000 01234566666666655421 22
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDM 401 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (648)
..|+.+...+...|++++|+..|++.....+.+..+|..+...+...| ++++|...+..+.+.. +.+..++..+...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG--DPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456666666667777777777777766533334556666666666667 7777777777766653 3356677778888
Q ss_pred HhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 478 (648)
|...|++++|...|+...+ | +...|..+...+.+.|++++|+..|++.... .+.+...++.+...+...|++++|+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHH
Confidence 8888888888888887654 2 5667777888888899999999999988764 2334577778888888899999999
Q ss_pred HHHHHhHHhcCCCCC-hH-------HHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 479 HLFDSMLKDYHIEPS-PD-------HYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
..|+...+. .|+ .. .++.....+...|++++|.+++++.. ..| +...+..+...+...|++++|...
T Consensus 488 ~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999887643 443 11 12222233444689999999888753 334 445678888899999999999999
Q ss_pred HHHHHhcCCCCch
Q 006364 549 ADALMKMEPAGSG 561 (648)
Q Consensus 549 ~~~~~~~~p~~~~ 561 (648)
++++.++.+....
T Consensus 565 ~e~A~~l~~~~~e 577 (615)
T TIGR00990 565 FERAAELARTEGE 577 (615)
T ss_pred HHHHHHHhccHHH
Confidence 9999888765433
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.6e-13 Score=140.08 Aligned_cols=502 Identities=12% Similarity=0.090 Sum_probs=349.3
Q ss_pred CCChhHHHHHhhcCC------CCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHh---hcccChh
Q 006364 7 SGQFDKALCIFNNLN------NPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFC---LDHEGFL 74 (648)
Q Consensus 7 ~g~~~~A~~~f~~~~------~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~---~~~~~~~ 74 (648)
.+++-.|+..|.... .||+..- +=.+|.+.+ .|+..|.+..+-.. -++.++..|--.- .....+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHH
Confidence 467778888888732 2444321 012233433 67777777776432 1222222221111 1223455
Q ss_pred hHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCC------cchHHHHHHHHHcCCCChHHHHHHHH
Q 006364 75 FGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKD------SVSWNAILSGYTQDGDYGVEAILALI 148 (648)
Q Consensus 75 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~~a~~~~~ 148 (648)
.+.+++....+.. ..++.+.+.|-+.|.-.|+++.++.+...+...+ ..+|--+-++|-..| ++++|...|.
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHH
Confidence 6666666665543 5678889999999999999999999887776422 335667788899999 9999999998
Q ss_pred HHHHCCCCCChhhH--HHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC----ChHHHHHHHhcCCC
Q 006364 149 EMMRKGLRLDHVSF--TSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCE----VTGDANKVFRRMHD 222 (648)
Q Consensus 149 ~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~ 222 (648)
+-.+. .||.+++ .-+-..+...|+++.+...|+.+.+.. +.+..+.-.|-..|...+ ..+.|..+......
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 87663 4555444 456778889999999999999998864 445556666666676665 56778888887777
Q ss_pred CCchhhHHHhc-------CChhhHHHHHHH----HHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHh---cCCC
Q 006364 223 RNVISWTTMIS-------MNREDAVSLFKE----MRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKT---NFLS 288 (648)
Q Consensus 223 ~~~~~~~~li~-------g~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~ 288 (648)
+.++..++.|. +++..++..|.. |...+-.+-....|.+-.-....|+++.|...+...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 66665555554 666666666654 345565577788888888889999999999998887765 1223
Q ss_pred Cch------hHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHH
Q 006364 289 EPS------VCNCLITMYARFESMQDSEKVFDELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYT 357 (648)
Q Consensus 289 ~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~ 357 (648)
|.. +--.+...+-..++.+.|.+.+..+....+ ..|--+.......+...+|..+++.... ...|+..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 331 222344555566789999999998875443 2333333222234678899999999888 44555555
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhh------------cCCHHHHHHHHhhcCCC---
Q 006364 358 FGSVLNAVGAAEDISLKHGQRCHSHIIKV-GLDSDPIVGSALLDMYGK------------RGSIFESQRVFNETQEK--- 421 (648)
Q Consensus 358 ~~~ll~a~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~--- 421 (648)
+ +-..+.+.. .+..+..-|..+.+. ...+|+++.-+|.+.|.. .+..++|.++|.++.+.
T Consensus 569 l--~G~~~l~k~--~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 569 L--LGNLHLKKS--EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred H--HHHHHHhhh--hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4 433444444 566666655555542 223688887778776653 35678899999987753
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMV 501 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 501 (648)
|..+=|-+.-.++..|++.+|..+|.+.++... -+..+|..+..+|...|++..|++.|+...+++.-.-+.....+|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 667778888999999999999999999998743 3556788999999999999999999999999877666799999999
Q ss_pred HHHhhcCCHHHHHHHHhhCC
Q 006364 502 DMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~ 521 (648)
.++.++|++.+|.+......
T Consensus 724 ra~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998776543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=4e-13 Score=143.54 Aligned_cols=434 Identities=10% Similarity=0.034 Sum_probs=255.6
Q ss_pred hcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHH---HHHHcCCCChHHHH
Q 006364 68 LDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAIL---SGYTQDGDYGVEAI 144 (648)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~~a~ 144 (648)
.+.|++..|...+....+......+.++ .++..+...|+.++|+..+++...|+...+..+. ..+...| ++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g-dyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK-RWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHH
Confidence 4666677777777766655321112233 6666666667777777777666655433333332 2444556 666777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCC
Q 006364 145 LALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRN 224 (648)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 224 (648)
++|+++.+.. |+. ..++..++..|...++.++|++.++.+...+
T Consensus 123 ely~kaL~~d--P~n----------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 123 ALWQSSLKKD--PTN----------------------------------PDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHhhC--CCC----------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 7766666543 221 2233344444555555555555555544321
Q ss_pred chhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 225 VISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFE 304 (648)
Q Consensus 225 ~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 304 (648)
|+...+..++..+...++..+|.+.++++.+.. +.+...+..++....+.|
T Consensus 167 ----------------------------p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 167 ----------------------------PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred ----------------------------cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 222222222222222333333555555555543 334555556666666666
Q ss_pred ChHHHHHHHhhcCCC-CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 006364 305 SMQDSEKVFDELSCR-EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHI 383 (648)
Q Consensus 305 ~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~ 383 (648)
-...|.++...-+.- +...+.-+ +.+.|.+..+...........-|..+=.++ .....++...
T Consensus 218 ~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~~~~~r~~~~d~al--------a~~~~l~~~~ 281 (822)
T PRK14574 218 IVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTRSETERFDIADKAL--------ADYQNLLTRW 281 (822)
T ss_pred CcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccccchhhHHHHHHHH--------HHHHHHHhhc
Confidence 666666666554311 00111100 011122221111100000011121111111 1111111111
Q ss_pred HHhCCCCchh----HHHHHHHHHhhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--
Q 006364 384 IKVGLDSDPI----VGSALLDMYGKRGSIFESQRVFNETQEK----SEFAWTAIISALARHGDYESVMNQFKEMENKG-- 453 (648)
Q Consensus 384 ~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 453 (648)
. ..++... ...-.+-++.+.|++.++++.|+.+..+ ...+--.+.++|...+++++|..+|++.....
T Consensus 282 ~--~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 282 G--KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred c--CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 1121111 1122445677889999999999999854 23455678889999999999999999986642
Q ss_pred ---CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC------------CCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 454 ---VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH------------IEPS-PDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 454 ---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
..++......|.-++...+++++|..+++.+.+... ..|| ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122334457888899999999999999999976311 2234 566677788889999999999999
Q ss_pred hhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 518 GQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 518 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+++. .+-|...+..+...+...|....|++.++.+..++|++..+....+.++...|+|++|..+.+.+
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9876 44678888889999999999999999999999999999999999999999999999998877554
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.4e-12 Score=121.07 Aligned_cols=434 Identities=13% Similarity=0.095 Sum_probs=262.3
Q ss_pred hhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHh--CCChhH-HHHHhccCCC---CCcchHHHHH
Q 006364 57 AVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSR--WGRLVE-ARRVFDEMPN---KDSVSWNAIL 130 (648)
Q Consensus 57 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~~~~---~~~~~~~~li 130 (648)
+.|=+.|++. ...|.+..+.-+|+.|...|++.+..+--.|+..-+- ..++.- -++-|-.|.+ ....+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 3355666654 4567889999999999999988888877777654332 233222 2334444543 344555
Q ss_pred HHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 006364 131 SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVT 210 (648)
Q Consensus 131 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (648)
+.| .. |- ++.+.. .-+..||.++|.++++-...+.|.+++.+........+..++|.+|.+-.-
T Consensus 191 ----K~G-~v--Ad-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 ----KSG-AV--AD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ----ccc-cH--HH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 344 32 22 444332 235678888999888888888888888888777777777777777764322
Q ss_pred HHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHH----HHHHHHHHHhcC
Q 006364 211 GDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEG----RMIHGLCIKTNF 286 (648)
Q Consensus 211 ~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~ 286 (648)
....+++.+|....+.||..|||+++++.++.|+++.| .+++.+|.+.|+
T Consensus 255 --------------------------~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV 308 (625)
T KOG4422|consen 255 --------------------------SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV 308 (625)
T ss_pred --------------------------hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC
Confidence 23367888999999999999999999999999988765 678899999999
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHhhcC--------C----CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhC---
Q 006364 287 LSEPSVCNCLITMYARFESMQD-SEKVFDELS--------C----REIISWNALISGYAQNGLSLAAVQAFFGVIKE--- 350 (648)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~--------~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 350 (648)
.|...+|..+|..+++-++..+ |..++..+. + .|...+..-+..|....+.+-|.++-.-...|
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 9999999999999988888755 333333321 0 12233444455555555555554444333221
Q ss_pred --CCCC---HHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhH
Q 006364 351 --SKPN---AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFA 425 (648)
Q Consensus 351 --~~p~---~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 425 (648)
+.|+ .+-|..+..+.++.. ..+.....|..++..-+-|+..+...++.+..-.|.++-..++|..+..-+
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~e--s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g--- 463 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQME--SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG--- 463 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh---
Confidence 1222 223444555555555 666666666666665556666666666666666666666666555444211
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhcccCcHHHHHH-HHHHhHHhcCCCCChHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSI---TFLSVLTVCGRNGMIHKGRH-LFDSMLKDYHIEPSPDHYSCMV 501 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~-~~~~m~~~~~~~p~~~~~~~l~ 501 (648)
..-+.+--.+++..|......|+.. -+..+..-|.. ++.++.+ .-.+|. ...-.....++..
T Consensus 464 ---------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia 529 (625)
T KOG4422|consen 464 ---------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQR---AQDWPATSLNCIA 529 (625)
T ss_pred ---------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHH---hccCChhHHHHHH
Confidence 1111122233333343333334322 22222222211 1222211 122232 2234456677788
Q ss_pred HHHhhcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 502 DMLGRVGRLEEAEELVGQIP-------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
-.+.|.|+.++|.+++.... ..|.....--|+.+-...++...|..+++-+.+.+
T Consensus 530 ~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 530 ILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 88889999999988876552 22444444455566666677777777777765543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.3e-13 Score=127.02 Aligned_cols=474 Identities=11% Similarity=0.028 Sum_probs=291.9
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHH-HHHHHHHhCCChhHHHHHhcc----CCCC----CcchHHHHHHH
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGN-ALITMYSRWGRLVEARRVFDE----MPNK----DSVSWNAILSG 132 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~----~~~~----~~~~~~~li~~ 132 (648)
.|.+-|.......+|+..++.+++....|+.-... .+-+.+.+...+..|++++.. ++.- .+...|.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 33444555667778888888888877777654333 344567777888888887643 3321 12334555556
Q ss_pred HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchH--------HHHHHHH
Q 006364 133 YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVG--------NVLMSTY 204 (648)
Q Consensus 133 ~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~li~~~ 204 (648)
|.+.| .+++|+..|+...+. .||..+--.|+-++...|+-+..++.|..|+.....+|..-| ..|+.--
T Consensus 286 fiq~g-qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 286 FIQAG-QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred EEecc-cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 77888 888888888887764 477776666666666778888888888888765544443321 1122221
Q ss_pred HhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006364 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIK 283 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 283 (648)
.+...+..-++--+. +.++++-.--++...-+.||-. .|..-+..+-.....+.|..+ ++
T Consensus 363 i~nd~lk~~ek~~ka---------------~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--ei-- 423 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKA---------------DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--EI-- 423 (840)
T ss_pred HhhHHHHHHHHhhhh---------------hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--hh--
Confidence 221111111111001 1111111111111111122211 010111111001111111000 00
Q ss_pred hcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHH-----HHHHHHhcC-CcHHHHHHHHHhHhCCCCCHHH
Q 006364 284 TNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNA-----LISGYAQNG-LSLAAVQAFFGVIKESKPNAYT 357 (648)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----li~~~~~~g-~~~~A~~~~~~m~~~~~p~~~~ 357 (648)
.-..-|.+.|+++.|.++++-....|..+-++ -..-|.+.| ++..|...-+......+-+...
T Consensus 424 -----------~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a 492 (840)
T KOG2003|consen 424 -----------NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAA 492 (840)
T ss_pred -----------hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHH
Confidence 11123566777777777776665544322221 111222222 4455544444433322223333
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 006364 358 FGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ---EKSEFAWTAIISALA 434 (648)
Q Consensus 358 ~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 434 (648)
...--+.....| +++.+...+.+.....-......|| +.-.+.+.|++++|+++|-.+. ..++...-.+.+.|-
T Consensus 493 ~~nkgn~~f~ng--d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 493 LTNKGNIAFANG--DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred hhcCCceeeecC--cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 322223333445 7778877777776654443344444 3345678899999999987654 457777777888899
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 513 (648)
...+..+|++++-+.... ++.|+....-|...|-+.|+-..|.+++-.- |..-| +.++...|..-|....-+++|
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHH
Confidence 999999999999887764 5556788888999999999999999987544 34455 589999999999999999999
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 514 EELVGQIP-GGPGLSVLQSLLGAC-RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 514 ~~~~~~~~-~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
...|++.. .+|+..-|..++..| ++.||++.|...|+...+..|.+......|..+....|.
T Consensus 646 i~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999865 789999999998765 667999999999999999999999999999999888874
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=1e-12 Score=132.73 Aligned_cols=511 Identities=11% Similarity=0.027 Sum_probs=295.5
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCC
Q 006364 43 SFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKD 122 (648)
Q Consensus 43 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 122 (648)
.++-.+...|+.|+.+||.+++..||..|+++.|- +|..|.-...+.+..+++.++.+..+.++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778889999999999999999999999999999 9999998888888899999999999999998876 688
Q ss_pred cchHHHHHHHHHcCCCChHHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhcCCC-Ch------hHHHHHHHHHHH
Q 006364 123 SVSWNAILSGYTQDGDYGVEAILALIE-MM-------RKGLRLDHVSFTSAASACGHEK-NL------ELGKQIHGVSIK 187 (648)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~~a~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~ 187 (648)
+.+|+.|+.+|.+.| +... ++..++ |. ..|+.--..-|-..+++|-..- +. .--+.+++..++
T Consensus 83 aDtyt~Ll~ayr~hG-Dli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHG-DLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhcc-chHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999 6643 333333 22 1233222222222222222111 00 111233344444
Q ss_pred hc--CCCCcchHHHH--HHHHHh-CCChHHHHHHHhcCCC-CCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChh
Q 006364 188 MG--YGTHVSVGNVL--MSTYSK-CEVTGDANKVFRRMHD-RNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDV 256 (648)
Q Consensus 188 ~~--~~~~~~~~~~l--i~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~ 256 (648)
.+ .+......... ++-... ...+++-........+ ++..++.+.+. |+.+.|..++.+|++.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 43 11111111111 111111 1233444444444444 77777777766 99999999999999999998988
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCC
Q 006364 257 TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGL 336 (648)
Q Consensus 257 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (648)
-|..++-+ .++...++.+..-|...|+.|+..|+..-+..+.+.|....+.+.. + ....+++-+..-+-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s----q-~~hg~tAavrsaa~rg- 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS----Q-LAHGFTAAVRSAACRG- 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc----c-hhhhhhHHHHHHHhcc-
Confidence 88888766 8888888999999999999999999988777777755533322221 1 1111222222222222
Q ss_pred cHHHHHHHHHh------------Hh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC---CchhHHHHHHH
Q 006364 337 SLAAVQAFFGV------------IK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD---SDPIVGSALLD 400 (648)
Q Consensus 337 ~~~A~~~~~~m------------~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~ 400 (648)
..|.+.++.- .- +..-....|.......- .| .-+...++-..+...-.. .++..+..
T Consensus 312 -~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qg--k~e~veqlvg~l~npt~r~s~~~V~a~~~--- 384 (1088)
T KOG4318|consen 312 -LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QG--KGEEVEQLVGQLLNPTLRDSGQNVDAFGA--- 384 (1088)
T ss_pred -cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cC--CCchHHHHHhhhcCCccccCcchHHHHHH---
Confidence 2222222211 11 22222222222222111 23 333333333333211110 11112222
Q ss_pred HHhhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHh---CCChHHHHHHHHHH------------HHC----CCCC----
Q 006364 401 MYGKRGSIFESQRVFNETQEKSEF-AWTAIISALAR---HGDYESVMNQFKEM------------ENK----GVRP---- 456 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~~----g~~p---- 456 (648)
.+.+.|.+...+... .++ .-.+... .....+..++.... ... -..|
T Consensus 385 ---------~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 385 ---------LLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred ---------HHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 233344444433211 111 1111111 11111222221111 100 0111
Q ss_pred ---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-----CCHHH
Q 006364 457 ---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG-----PGLSV 528 (648)
Q Consensus 457 ---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 528 (648)
=...-+.++..|...-+..+++..-+.. +.+-+ ...|..||+.++.....++|..+.++...+ -+..-
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 0112234455555555555555443333 22122 267999999999999999999999887622 34455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKM---EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
+..+.+...+++....+..+.+.+.+. .|.-..+..-+.+..+..|+.+...++.+-+...|+..
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 677888888888888888888877753 24445667778888888999999999999888888876
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8e-15 Score=140.78 Aligned_cols=211 Identities=15% Similarity=0.191 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--KSEFAWTAIISALARHGDYESVMNQFKEM 449 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (648)
+.+.+...+..+...+.. ++..+..++.. ...+++++|.+++....+ ++...+..++..+.+.++++++..++++.
T Consensus 59 ~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555544322 44455556665 577888888888776543 46677888888899999999999999998
Q ss_pred HHCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCC
Q 006364 450 ENKG-VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPG 525 (648)
Q Consensus 450 ~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 525 (648)
.... .+++...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.++++... .+.+
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 7632 3456677888888889999999999999999865 786 8888899999999999999888776654 2456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+..|..+..++...|+.+.|...++++.+.+|+|+.....++.++...|+.++|.+++.+..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67789999999999999999999999999999999999999999999999999999987653
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=2.7e-12 Score=129.69 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChh
Q 006364 22 NPDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFL 74 (648)
Q Consensus 22 ~p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 74 (648)
.||.+||..+|..|+..| ++-.+|.-|.-...+.+...|+.++.+....++.+
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhccccccccc
Confidence 689999999999999888 44446766655444444444444444444444333
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=8.8e-11 Score=119.70 Aligned_cols=528 Identities=11% Similarity=0.066 Sum_probs=286.4
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+|..++.+.++... .+...|.+|-..+-..|+.+++...+-.+--. .+.|...|..+-....+.|.++.|.-.|.+..
T Consensus 157 eA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 67777777766543 25666777777777777777666654433322 24455667777777777777777777777666
Q ss_pred CCCcchHHHH---HHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHH----HHHHhcCCCChhHHHHHHHHHHHh-cCC
Q 006364 120 NKDSVSWNAI---LSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTS----AASACGHEKNLELGKQIHGVSIKM-GYG 191 (648)
Q Consensus 120 ~~~~~~~~~l---i~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 191 (648)
+.++.-|-.+ ...|-+.| +...|...|.++.......|..-+.. +++.+...++-+.|.+.++..... +-.
T Consensus 235 ~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 235 QANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred hcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 5443334333 34556667 77777777777776543222222222 334455555556666666665552 234
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhcCCC----CCch----------------------hhH-----HHhc----CCh
Q 006364 192 THVSVGNVLMSTYSKCEVTGDANKVFRRMHD----RNVI----------------------SWT-----TMIS----MNR 236 (648)
Q Consensus 192 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~----------------------~~~-----~li~----g~~ 236 (648)
.+...++.++..|.+...++.|......+.. +|.. +|+ .++. ...
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 4556667777777777777777666544432 1111 111 1111 111
Q ss_pred hhHHHHHHHHHHCCC--CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHh
Q 006364 237 EDAVSLFKEMRLDGV--CPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFD 314 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 314 (648)
+..-.+........+ .-+...|.-+..++...|.+..|..++..+.....--+..+|-.+..+|...|..+.|.+.|.
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~ 473 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYE 473 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 112222222233332 223445566666666666666666666666655444445566666666666666666666666
Q ss_pred hcCCCCcc---cHHHHHHHHHhcCCcHHHHHHHHHhHh---------CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 006364 315 ELSCREII---SWNALISGYAQNGLSLAAVQAFFGVIK---------ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSH 382 (648)
Q Consensus 315 ~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~ 382 (648)
....-++. .--+|-..+.+.|+.++|++.+..+.. ...|+..........+.+.| +.++-..+-..
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g--k~E~fi~t~~~ 551 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG--KREEFINTAST 551 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 65433222 223344455666666666666666432 22344444444444455555 55554444444
Q ss_pred HHHhCCC-----C-----------------chhHHHHHHHHHhhcCCHHHHHHHHhhc--------CCCChh----HHHH
Q 006364 383 IIKVGLD-----S-----------------DPIVGSALLDMYGKRGSIFESQRVFNET--------QEKSEF----AWTA 428 (648)
Q Consensus 383 ~~~~~~~-----~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~ 428 (648)
|+..... | .......++.+-.+.++.....+-...- ..-... .+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 4431110 0 0000011111111111111110000000 000111 2344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC--CCCH-H-HH-HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENKGV--RPDS-I-TF-LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS---PDHYSCM 500 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 500 (648)
++.++++.+++++|+.+...+.+... .++. . .+ ...+.++...+++..|..+++.|...++...+ ...|++.
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67788999999999999888876432 2222 1 22 34455667889999999999999876554433 5567766
Q ss_pred HHHHhhcCCHHHHHHHHhh-CCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 501 VDMLGRVGRLEEAEELVGQ-IPGGPGLSVLQSLL--GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
...+.+.|+----.+++.. +..+|+......++ ......+.+.-|.+.+-++...+|++|-+-.+++-++..
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 6666666654444444443 33333332222222 334566778889999999999999999887777776653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=8.4e-12 Score=126.98 Aligned_cols=328 Identities=13% Similarity=0.134 Sum_probs=216.1
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhc---CCCCcccHHHHHHHHHhcCCcHHHHHHHH
Q 006364 269 NLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDEL---SCREIISWNALISGYAQNGLSLAAVQAFF 345 (648)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (648)
|+++.|..++.++++.. +.....|.+|...|-..|+.+++...+-.. ...|...|-.+.....+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666653 344455666666666666666665544332 23344566666666666666666666666
Q ss_pred HhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHH----HHHHHhhcCCHHHHHHHHhhcCC-
Q 006364 346 GVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSA----LLDMYGKRGSIFESQRVFNETQE- 420 (648)
Q Consensus 346 ~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~- 420 (648)
+..+-.+++...+---...|-+.| +...|..-+.++.....+.|..-+.. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 666644555555555555566666 66666666666665443333222222 23444455556777777665443
Q ss_pred -C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHhcc
Q 006364 421 -K---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITF--------------------------LSVLTVCGR 470 (648)
Q Consensus 421 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~a~~~ 470 (648)
. +...++.++..|.+..+++.|......+......+|..-| ..+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1 4456777888888888888888887777662222222111 112223344
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIPGG---PGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 545 (648)
....+....+..-.... .+.|+ ...|.-+.++|...|++.+|+.++..+... -+..+|-.+...+...|.++.|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 44444444444444333 54454 888999999999999999999999988744 3466899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEE
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 600 (648)
.+.|++++...|++..+-..|+.+|.+.|+.++|.+.++.|-.-+-+..++++|-
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999988764444444666653
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.8e-13 Score=130.62 Aligned_cols=273 Identities=12% Similarity=0.106 Sum_probs=221.0
Q ss_pred ChHHHHHHHhhcCCC--Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CC-CCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 305 SMQDSEKVFDELSCR--EI-ISWNALISGYAQNGLSLAAVQAFFGVIK--ES-KPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 305 ~~~~a~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
+..+|...|..++.. |+ .....+..+|...+++++|.++|+.+.+ .. .-+...|++.|..+ .-+.+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL------q~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL------QDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH------HhhHHHH
Confidence 567788888886532 33 4445567889999999999999999887 22 35678888888765 2233333
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVR 455 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 455 (648)
.+..-.-.--+-.+.+|.++.++|.-+++.+.|++.|+...+- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 3433332233567899999999999999999999999987753 567899999999999999999999998864 44
Q ss_pred CCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHH
Q 006364 456 PDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQS 531 (648)
Q Consensus 456 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 531 (648)
|.. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.++|+++++++. .+.|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 443 567778889999999999999999986 67897 7788888999999999999999999875 3445555556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
-+..+...+++++|.+.+|++.++-|++..+|..++.+|.+.|+.+.|..-+.-+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 667778889999999999999999999999999999999999999999998877654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.3e-12 Score=117.81 Aligned_cols=360 Identities=10% Similarity=0.075 Sum_probs=241.9
Q ss_pred cCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-CChhhHHHHHHHHHHCCCCCChhhH--HHHHHHH
Q 006364 189 GYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-MNREDAVSLFKEMRLDGVCPNDVTF--IGLIHAI 265 (648)
Q Consensus 189 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~ 265 (648)
+...|...+-..-..+-+.|....|+..|......-+..|.+.+. ++.-.-++....... |...|..-+ -.+..++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-GLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-cCcccchHHHHHHHHHHH
Confidence 334454444444445667788888999888877766667776655 222112222222211 111111111 1233344
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHH
Q 006364 266 SIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFF 345 (648)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (648)
......+.+.+-.......|++.+...-+....+.-...++|.|+.+|+++.+.|+.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR---------------------- 295 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR---------------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc----------------------
Confidence 4455666666666666666666665555555555555566666666666665443311
Q ss_pred HhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---C
Q 006364 346 GVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---S 422 (648)
Q Consensus 346 ~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 422 (648)
--|..+|+.++-.-.... ....+..-.-.--+-.+.++..+.+.|+-.++.++|...|+...+- .
T Consensus 296 ------l~dmdlySN~LYv~~~~s------kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~ 363 (559)
T KOG1155|consen 296 ------LDDMDLYSNVLYVKNDKS------KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY 363 (559)
T ss_pred ------chhHHHHhHHHHHHhhhH------HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch
Confidence 123344444443221111 1111111111111234456677888888899999999999987653 4
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
...|+.|..-|....+...|++.|++.++- .+-|-..|-.|.++|.-.+...=|+-+|++.. ...|+ ...|.+|.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALG 439 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHH
Confidence 668999999999999999999999999984 34577899999999999999999999999986 56886 99999999
Q ss_pred HHHhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCchhHHHHHHHHHh
Q 006364 502 DMLGRVGRLEEAEELVGQIPGG--PGLSVLQSLLGACRIHGNVEMGERIADALMKM-------EPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~ 572 (648)
++|.+.++.++|.+.|.+...- .+...+..|...+.+.++.++|.+.+++.++. +|....+...|++-+.+
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 9999999999999999987633 44588999999999999999999999998872 34444566678888999
Q ss_pred cCCcHHHHHHHHHHh
Q 006364 573 KGDWEMVAILRKGMK 587 (648)
Q Consensus 573 ~g~~~~a~~~~~~m~ 587 (648)
.++|++|..+-....
T Consensus 520 ~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 520 MKDFDEASYYATLVL 534 (559)
T ss_pred hcchHHHHHHHHHHh
Confidence 999999988766544
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=1.7e-09 Score=106.43 Aligned_cols=460 Identities=13% Similarity=0.103 Sum_probs=302.0
Q ss_pred HHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHH----HHHCCCCCChhhHHHHHHHhc
Q 006364 98 LITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIE----MMRKGLRLDHVSFTSAASACG 170 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~~ 170 (648)
|.-+|++..-++.|.+++....+ .+...|-+--..=-.+| +.+....+..+ +...|+..+..-|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 33445566667777777665544 35666666555555666 77666666654 345677777777777777777
Q ss_pred CCCChhHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhhHHHhc-----CChhhHH
Q 006364 171 HEKNLELGKQIHGVSIKMGYGT--HVSVGNVLMSTYSKCEVTGDANKVFRRMHD---RNVISWTTMIS-----MNREDAV 240 (648)
Q Consensus 171 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~-----g~~~~a~ 240 (648)
..|..-.+..+....+..|++- -..+++.-...|.+.+.++-|+.+|....+ .+...|..... |..++-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 7777777777777777666543 235667777777777777777777765544 22233333222 5555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 006364 241 SLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE 320 (648)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 320 (648)
.+|++.... ++-....|....+..-..|++..|+.++....+.. +.+.
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnse------------------------------ 618 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSE------------------------------ 618 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcH------------------------------
Confidence 555554443 11122222222223333344444444444444332 1133
Q ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 321 IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
..|-+-+..-..+.+++.|..+|.+... ..|+...|.--++.--..+ ..++|.++++...+. ++.-...|-.+..
T Consensus 619 -eiwlaavKle~en~e~eraR~llakar~-~sgTeRv~mKs~~~er~ld--~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 619 -EIWLAAVKLEFENDELERARDLLAKARS-ISGTERVWMKSANLERYLD--NVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred -HHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchhhHHHhHHHHHhh--hHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 3444444555555555555555555443 2222222222222222233 556666666555543 3444556777777
Q ss_pred HHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
.+-..++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-+|..++++..-.+ +-|...|...++.=.+.|..+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 88888888888888887664 3 45678888888788888899999998887653 33567788888888899999999
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 478 RHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
..+..+..++ -|+ ...|.--|.+..+.++-....+.+++-. .|+.+..++...+.....++.|..-|+++...+
T Consensus 773 ~~lmakALQe---cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 773 ELLMAKALQE---CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHh---CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9888888766 454 7778888888888888666666666654 566777788888999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEc
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVG 603 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 603 (648)
|++..+|..+-..+...|.-++-.+++++... ..|..|..|..+.
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 99999999999999999998899999987764 4577788887765
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=1.3e-08 Score=100.41 Aligned_cols=418 Identities=11% Similarity=0.076 Sum_probs=319.0
Q ss_pred HHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC---CCchhhHHHhc-----CChhh
Q 006364 167 SACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD---RNVISWTTMIS-----MNRED 238 (648)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~-----g~~~~ 238 (648)
++.....+.+.|..++...++.- +.+. -|.-+|++..-++.|.++++...+ .+...|-+.-. |+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 44455666667888888777642 2222 344556677778888888877655 34445544332 77777
Q ss_pred HHHHHHH----HHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChHHHHHH
Q 006364 239 AVSLFKE----MRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE--PSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 239 a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
..+++++ +...|+..+...|..=..+|-..|..-....+...++..|+... ..+|..-.+.|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 7776654 56679999999998888899999999999999999998887654 45677788889999999999999
Q ss_pred HhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 313 FDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 313 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
|....+- +...|...+..=-..|..++...+|++.....+-....|-......-..| +...+..++..+.+....
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag--dv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG--DVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC--CcHHHHHHHHHHHHhCCC
Confidence 8877643 44677777777777888899999999988877777777777777777778 999999999998887644
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE--KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 466 (648)
+..++-+-+..-.....++.|..+|.+... +....|.--+...-..++.++|++++++..+. -|+ ...|..+.+
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 777888888888999999999999987764 56777877777777788999999999988874 566 456777778
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...++++.|...|..=. ..-|+ +..|-.|...=.+.|.+-.|..++++.. .+.+...|...+..-.++|+.+
T Consensus 694 i~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 8888999999998887654 33676 7788888888899999999999998765 4567888999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------------------------------chhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 544 MGERIADALMKMEPAG------------------------------SGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
.|+.+..++++-.|.+ +.....++..+....+++.|.+-|.+... +.+
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDP 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCC
Confidence 9999998888766654 44455666666666777777777765443 234
Q ss_pred CCceeE
Q 006364 594 EVGFSW 599 (648)
Q Consensus 594 ~~~~s~ 599 (648)
+.|-.|
T Consensus 849 d~GD~w 854 (913)
T KOG0495|consen 849 DNGDAW 854 (913)
T ss_pred ccchHH
Confidence 444444
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.9e-11 Score=111.67 Aligned_cols=208 Identities=13% Similarity=0.184 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
+.-.+..-++..++....++. .|--+..+|....+.++....|+...+ .|..+|-.-...+.-.+++++|+.=|++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777765543332 256666778888888888888887654 3666777777777777889999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-
Q 006364 449 MENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP- 524 (648)
Q Consensus 449 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 524 (648)
.++ +.|+ ...|.-+..+.-+.+.++++...|++..++ -|+ ++.|+.....+...+++++|.+.++... ..|
T Consensus 420 ai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 420 AIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred Hhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 887 4554 456666666667888999999999999876 455 7888999999999999999999998754 223
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 525 --------GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 525 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+.+..+++-.-++ +|+..|+.+.+++.+++|....+|..|+.+-.+.|+.++|+++|++-
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23344444444444 89999999999999999999999999999999999999999999864
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.1e-11 Score=111.62 Aligned_cols=414 Identities=11% Similarity=0.064 Sum_probs=262.6
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCCCcchH-HHHHHHHHhCCChHHHHHHHhcCCC--CC--chhhHHH--------hc-
Q 006364 168 ACGHEKNLELGKQIHGVSIKMGYGTHVSVG-NVLMSTYSKCEVTGDANKVFRRMHD--RN--VISWTTM--------IS- 233 (648)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l--------i~- 233 (648)
-|.......+|...++.+++..+-|+.-.. ..+-+.+.+..++.+|++.++.... |. ..+---+ +.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 344445556666777777766655554332 2234556677777777777654432 11 1111111 11
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC------------chhHHHHH----
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE------------PSVCNCLI---- 297 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~li---- 297 (648)
|.++.|+..|+..... .|+..+-..++-++...|+.++..+.|..++..-..+| ....+--|
T Consensus 290 gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 7888888888776553 57776666666666667888888888888776432222 22222111
Q ss_pred -HHHHhcC--ChHHHH----HHHhhcCCCCcc---cHH----------H--------HHHHHHhcCCcHHHHHHHHHhHh
Q 006364 298 -TMYARFE--SMQDSE----KVFDELSCREII---SWN----------A--------LISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 298 -~~~~~~g--~~~~a~----~~~~~~~~~~~~---~~~----------~--------li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
.-.-+.. +.++++ ++..-...++.. -|. . -...+.++|+++.|+++++-..+
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 1111111 112221 111111222210 111 0 11347889999999999988876
Q ss_pred -CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHH
Q 006364 350 -ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTA 428 (648)
Q Consensus 350 -~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 428 (648)
..+.-+..-+.+-..+.-.|..++..+.+.-+...... .-++...+.-.+.-...|++++|.+.+.+....|...-.+
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 33332322222222222222226666666655544321 1122222222233446799999999999999887665544
Q ss_pred HHH---HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 429 IIS---ALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 429 li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
|.+ .+-..|+.++|++.|-++..- +..+.....-+...|....+...|++++.+.. .+.|+ +...+.|.++|
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHh
Confidence 443 467789999999999988763 34556677778888888999999999998774 55675 89999999999
Q ss_pred hhcCCHHHHHHHHh-hCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 505 GRVGRLEEAEELVG-QIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 505 ~~~g~~~~A~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
-+.|+-.+|.+..- ... .+.+..+...|...|....-.+.+...++++.-+.|....--..++.++.+.|+++.|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999998754 333 4567777777777888888889999999999989998777677788889999999999999
Q ss_pred HHHHhh
Q 006364 583 RKGMKS 588 (648)
Q Consensus 583 ~~~m~~ 588 (648)
++....
T Consensus 683 yk~~hr 688 (840)
T KOG2003|consen 683 YKDIHR 688 (840)
T ss_pred HHHHHH
Confidence 987653
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=7.6e-09 Score=98.06 Aligned_cols=524 Identities=11% Similarity=0.095 Sum_probs=315.5
Q ss_pred ccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC--CCc-chHHHHHHHHHcCCCChHHHHHH
Q 006364 70 HEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN--KDS-VSWNAILSGYTQDGDYGVEAILA 146 (648)
Q Consensus 70 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~~a~~~ 146 (648)
++++..|.++|++...-. ..+...|-..+.+=.++..+..|+.+|++... |.+ ..|--.+-.=-..| +...|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg-Ni~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG-NIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 444555666666555433 34444555555555556666666666654332 211 12222222222334 55555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCch
Q 006364 147 LIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVI 226 (648)
Q Consensus 147 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 226 (648)
|..-.. ..|+...|.+.|+.=.+-+.++.|..+++..+-. .|++..|-.....=-++|.+..|..+|+.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer------- 232 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER------- 232 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH-------
Confidence 555443 3455555555555555555555555555554432 35555555555555555555555555432
Q ss_pred hhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcC
Q 006364 227 SWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE--PSVCNCLITMYARFE 304 (648)
Q Consensus 227 ~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 304 (648)
|++.|.. -.-+...|++....=.+...++.|.-++...++.- +.+ ...|..+...--+.|
T Consensus 233 ------------Aie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 233 ------------AIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred ------------HHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhc
Confidence 2222211 00112233333333355677888888888877752 222 345555555555566
Q ss_pred ChHHHHHH--------HhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHH-------HHHHHHHHh-
Q 006364 305 SMQDSEKV--------FDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAY-------TFGSVLNAV- 365 (648)
Q Consensus 305 ~~~~a~~~--------~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~-------~~~~ll~a~- 365 (648)
+....... ++.+... |-.+|--.+..-...|+.+...++|++...+++|-.. .|.-+=-+|
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 65444332 2233333 4467777777778889999999999999998888432 111111111
Q ss_pred --ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh----hcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCC
Q 006364 366 --GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG----KRGSIFESQRVFNETQ--EKSEFAWTAIISALARHG 437 (648)
Q Consensus 366 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 437 (648)
.... +.+.+.+++...++ -++....++.-+=-+|+ ++.++..|.+++.... .|...+|-..|..=.+.+
T Consensus 375 eEle~e--d~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAE--DVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhh--hHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 2244 88889999998888 35556677776666665 5789999999998654 467778888888889999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
+++....+|++.++-+ +-|..+|.....-=...|+.+.|..+|.-+++...+......|...|+-=...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999853 334577777776667889999999999999876444444677888888888999999999999
Q ss_pred hhCC-CCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhc----CCCCc--hhHHHHHHHHHhcC
Q 006364 518 GQIP-GGPGLSVLQSLLGACR-----IHG-----------NVEMGERIADALMKM----EPAGS--GSYVLMSNLYAEKG 574 (648)
Q Consensus 518 ~~~~-~~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g 574 (648)
++.. ..+...+|-++...-. ..+ +...|..+|+++... +|... ......-+.-...|
T Consensus 531 erlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 531 ERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG 610 (677)
T ss_pred HHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 9876 3355557877765433 334 677888999988753 23221 12333334445567
Q ss_pred CcHHHHHHHHHHhh-----CCCccCCcee-EEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHH
Q 006364 575 DWEMVAILRKGMKS-----KGVRKEVGFS-WADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGS 633 (648)
Q Consensus 575 ~~~~a~~~~~~m~~-----~~~~~~~~~s-~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~ 633 (648)
.-.+...+-++|.+ +.+..+.|.+ |=+. +-.+...|.+.+.+-.|.+.-..+..
T Consensus 611 ~~~d~~~V~s~mPk~vKKrr~~~~edG~~~~EEy-----~DYiFPed~~~~~~~K~LeaA~kWK~ 670 (677)
T KOG1915|consen 611 TEGDVERVQSKMPKKVKKRRKIQREDGDTEYEEY-----FDYIFPEDASATKNLKILEAAKKWKK 670 (677)
T ss_pred chhhHHHHHHhccHHHHhhhhhhcccCchhHHHH-----HHhcCccccccCcchHHHHHHHHHHH
Confidence 77777777776643 2233444432 2111 11223334455555556655555544
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-10 Score=112.38 Aligned_cols=254 Identities=12% Similarity=0.037 Sum_probs=192.9
Q ss_pred HHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 327 LISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
-..-+...+++.+..+++....+..+++...+..-|.++...| +...-..+-..+++. .+..+.+|-++.-.|...|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~--~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELG--KSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc--ccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344455566666666666666645555555555555555555 333333333344432 4567788888888899999
Q ss_pred CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
+..+|++.|.+...- -...|-.....|+-.|..++|+..|...-+. ++-....+..+..-|.+.+..+.|.++|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999876543 3568999999999999999999999887663 222223344555668889999999999998
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGP-GLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
.. ++.|+ +...+-+.-..-..+.+.+|...|+... .++ ...+++.|+.+|++.+.+++|...+++.+
T Consensus 406 A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 406 AL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 85 77886 7777777777778899999999987654 112 45678999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 554 KMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 554 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+.|.++.+|..++-+|...|+++.|++.+.+..
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999998543
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2.3e-11 Score=120.04 Aligned_cols=246 Identities=11% Similarity=0.071 Sum_probs=194.7
Q ss_pred CcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHhhcCCHHHHHH
Q 006364 336 LSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGL--DSDPIVGSALLDMYGKRGSIFESQR 413 (648)
Q Consensus 336 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 413 (648)
+..+|+..|......+.-.......+-.+|.... +.++++.+|+.+.+... .-+..+|.+.+-.+-+.=.+.---+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~--~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELI--EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 5688999999944455555677788888999999 99999999999887542 2356677776654433211111111
Q ss_pred HHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC
Q 006364 414 VFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 414 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 492 (648)
-+-.+....+.+|.++.++|.-+++.+.|++.|++... +.| ...+|+.+..-+.....+|.|...|+..+ ++.|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 22223334678999999999999999999999999987 566 56788877777788889999999999875 4555
Q ss_pred C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 493 S-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 493 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
. -..|--|...|.|.++++.|+-.|+++. ..| +......++..+.+.|+.++|.++++++.-++|.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 4 4455556788999999999999999876 445 555667778889999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHhh
Q 006364 570 YAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 570 ~~~~g~~~~a~~~~~~m~~ 588 (648)
+...+++++|...++++++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 9999999999999999986
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=4.9e-10 Score=113.42 Aligned_cols=282 Identities=12% Similarity=0.004 Sum_probs=150.6
Q ss_pred CChhhHHHHHHHHHHCCCCCChhh-HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhcCChHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVT-FIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP--SVCNCLITMYARFESMQDSE 310 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~ 310 (648)
|+++.|.+.+.+..+. .|+... +.....+....|+.+.+...+....+.. |+. .+.-.....+...|+++.|.
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666554443 233222 2233344455566666666666554432 222 22223345555555666555
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh
Q 006364 311 KVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV 386 (648)
Q Consensus 311 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~ 386 (648)
..++.+.+. +...+..+...+.+.|++++|.+.+....+ +.. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH-----------------------
Confidence 555555422 333444555555555555555555555554 221 1111110000
Q ss_pred CCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--
Q 006364 387 GLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITF-- 461 (648)
Q Consensus 387 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-- 461 (648)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 0011111111112233444555555553 36777888888888888888888888888774 3443321
Q ss_pred -HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-h--HHHHHHHHHHhhcCCHHHHHHHHhh--C-CCCCCHHHHHHHHH
Q 006364 462 -LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-P--DHYSCMVDMLGRVGRLEEAEELVGQ--I-PGGPGLSVLQSLLG 534 (648)
Q Consensus 462 -~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~ 534 (648)
..........++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|+. . ...|+...+..+..
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 11112223346677777777776654 444 3 4555667777777777777777772 2 24566666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 006364 535 ACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~ 554 (648)
.+...|+.++|.+++++.+.
T Consensus 379 ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=4.9e-10 Score=112.74 Aligned_cols=141 Identities=12% Similarity=0.039 Sum_probs=72.8
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH
Q 006364 407 SIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS 483 (648)
Q Consensus 407 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 483 (648)
+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .||... .++.+....++.+++.+..+.
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 34444445554432 24555555666666666666666666655542 333311 122222334566666666665
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 484 MLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 484 m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..+. .|+ ...+.++...+.+.|++++|.+.|+... ..|+...+..+...+...|+.++|.+++++.+.
T Consensus 320 ~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5543 443 4445555555555555555555555543 335555555555555555555555555555544
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.9e-10 Score=115.76 Aligned_cols=276 Identities=10% Similarity=0.058 Sum_probs=197.3
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHhcCChHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCN--CLITMYARFESMQDSEK 311 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~ 311 (648)
|+++.|.+.+.......-.| ...|.....+....|+.+.+...+..+.+. .|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666665555443321111 122333344457889999999999888764 45544333 34678888999999999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCH-------HHHHHHHHHhccCchhhHHHHHHHH
Q 006364 312 VFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNA-------YTFGSVLNAVGAAEDISLKHGQRCH 380 (648)
Q Consensus 312 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~-------~~~~~ll~a~~~~~~~~~~~a~~~~ 380 (648)
.++.+.+. ++.....+...|.+.|++++|++++..+.+ ...++. .+|..++....... +.+....++
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--GSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHH
Confidence 99888643 456778888999999999999999999988 433222 12233333322323 444444555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HH
Q 006364 381 SHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SI 459 (648)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 459 (648)
+.+-+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++++..++..+. .|+ ..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 444322 35678888899999999999999999998776543322333455556679999999999999875 455 45
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
.+..+...|.+.|++++|.+.|+...+ ..|+...|..|..++.+.|+.++|.+++++.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677888999999999999999999974 5899999999999999999999999998864
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3e-09 Score=100.53 Aligned_cols=313 Identities=10% Similarity=-0.006 Sum_probs=217.8
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHH-HHHHHHHhcCCcHHHHHH
Q 006364 265 ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWN-ALISGYAQNGLSLAAVQA 343 (648)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~ 343 (648)
+...|....|...+...+.. -+..|.+-+....-..+.+.+..+-...+..+...-. .+..++..-.+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666554432 2333444444333334444444443333322111111 123445555567777777
Q ss_pred HHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC
Q 006364 344 FFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD--SDPIVGSALLDMYGKRGSIFESQRVFNETQE 420 (648)
Q Consensus 344 ~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 420 (648)
...... |++-+...-+....+..... +.++|..+|+.+.+..+- .|..+|+.++-.-..+.++.---+..-.+.+
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~r--DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQR--DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 777766 55444444433333444455 889999999998887431 2556666655333222222222222222333
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYS 498 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 498 (648)
=-+.|..++.+-|.-.++.++|+..|++..+ +.|. ...|+.+..-|....+...|++.++.++ .+.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHh
Confidence 3456777788888999999999999999988 4555 4667778888999999999999999997 5677 488999
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDW 576 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 576 (648)
.|..+|.-.+...-|+-.|++.. .+.|...|.+|+..|.+.++.++|++.|+++...+-.+..+|..|+++|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999876 4568889999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhh
Q 006364 577 EMVAILRKGMKS 588 (648)
Q Consensus 577 ~~a~~~~~~m~~ 588 (648)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.7e-10 Score=116.72 Aligned_cols=278 Identities=10% Similarity=0.027 Sum_probs=159.4
Q ss_pred HhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCH--HHHHHHHHHhccCchhhHHH
Q 006364 301 ARFESMQDSEKVFDELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNA--YTFGSVLNAVGAAEDISLKH 375 (648)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~--~~~~~ll~a~~~~~~~~~~~ 375 (648)
...|+++.|.+.+....+... ..+-.......+.|+++.|.+.|.+..+.. |+. ..-......+...+ +.+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~--~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQN--ELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCC--CHHH
Confidence 446788888777766654321 223333455666778888888877766522 332 22222355555566 7777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHH----HHHHHHHhCCChHHHHHHHHH
Q 006364 376 GQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWT----AIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~ 448 (648)
|...++.+.+.. +-++.+...+...|...|++++|.+.+....+. +...+. ....++...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777665 334556667777777777777777777766643 222221 111222333333444445555
Q ss_pred HHHCCCC---CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 449 MENKGVR---PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDH---YSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 449 m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
+.+.... .+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 5553211 25566666667777777777777777777654 444221 1111112223456666666665543
Q ss_pred CCC-CH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 522 GGP-GL--SVLQSLLGACRIHGNVEMGERIAD--ALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 522 ~~~-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..| ++ ....++...|.+.|++++|.+.++ ...+..|++ ..+..++.++.+.|+.++|.+++++-
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 23 455677777777777777777777 344555544 34557777777777777777777653
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=4.2e-12 Score=121.92 Aligned_cols=250 Identities=15% Similarity=0.195 Sum_probs=100.7
Q ss_pred HHHHHHhcCChHHHHHHHhh-cC----CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCch
Q 006364 296 LITMYARFESMQDSEKVFDE-LS----CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAED 370 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~ 370 (648)
+...+.+.|++++|.++++. +. ..|+..|..+.......+++++|...++++....+-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-
Confidence 34555566666666666632 21 12344555555555556666666666666665222234444444444 4455
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHhCCChHHHHHH
Q 006364 371 ISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ-----EKSEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
+++.|..+.....+.. +++..+...+..+.+.|+++++.++++... ..+...|..+...+.+.|+.++|+..
T Consensus 92 -~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 -DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666665544332 455556667777888888888888877643 23667788888888899999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 006364 446 FKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--G 522 (648)
Q Consensus 446 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 522 (648)
|++..+ ..|+ ......++..+...|+.+++.++++...+.. ..+...+..+..++...|+.++|+..+++.. .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999887 4564 5667788888888999998888888876652 3346677888888999999999999988865 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
+.|+.+...+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 45777778888899999999999888877654
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=5.6e-09 Score=98.93 Aligned_cols=383 Identities=10% Similarity=0.084 Sum_probs=215.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC--C--CchhhHHHhc----CChhhHHHHH
Q 006364 172 EKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD--R--NVISWTTMIS----MNREDAVSLF 243 (648)
Q Consensus 172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~----g~~~~a~~~~ 243 (648)
.+++..|..+|+..+... ..+...|-..+.+=.++..+..|..++++... | |-.-|.-+.- |++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 445566777777766544 45666777777778888888888888876543 2 1111111111 5555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCccc
Q 006364 244 KEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIIS 323 (648)
Q Consensus 244 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (648)
..-.. ..|+...|.+.++.=.+-+.++.|..+++..+-. .|++..|-.....-.++|....
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~--------------- 225 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL--------------- 225 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH---------------
Confidence 54443 2455555555555544555555555555444332 2444444444444444444444
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhHh--CC-CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCc-hhHHHHHH
Q 006364 324 WNALISGYAQNGLSLAAVQAFFGVIK--ES-KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSD-PIVGSALL 399 (648)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li 399 (648)
|..+|..... +. ..+...|.+...--..+. ..+.+..++...+.+=.+.. ...|..+.
T Consensus 226 ----------------aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk--E~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 226 ----------------ARSVYERAIEFLGDDEEAEILFVAFAEFEERQK--EYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred ----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4444444443 11 111111222211112223 56666666666665432221 33444444
Q ss_pred HHHhhcCCHHHHHHHH--------hhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-------HH
Q 006364 400 DMYGKRGSIFESQRVF--------NETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-------TF 461 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~--------~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~ 461 (648)
..--+-|+......+. +.+.+. |--+|--.+..--..|+.+...++|++.+.. ++|-.. .|
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 4444445544333332 222222 4456666677777778888888888887765 555321 12
Q ss_pred HHHHHHh---cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH----HHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH
Q 006364 462 LSVLTVC---GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM----VDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSL 532 (648)
Q Consensus 462 ~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 532 (648)
.-+=-+| ....+++.+.++|+...+ +.|. ..|+.-+ ..-..|+.++..|.+++.... ..|-..++...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHH
Confidence 1111122 346777888888877763 4554 4444333 333456777888888777655 44777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCc
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 596 (648)
+..-...++++....+|++.++-+|.+..+|...+..-...|+++.|..+++...++...--|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 7777778888888888888888888888888888888888888888888887776655433343
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.6e-10 Score=106.76 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=165.5
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.....+..+...|...|++++|.+.++...+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788899999999999999987653 256788889999999999999999999998853 334567778888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 544 (648)
.+...|++++|.+.++...+..........+..+...+.+.|++++|...+++.. .+.+...+..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999997642222236678888999999999999999998765 23456678889999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888889999999999999999999999887754
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=8.8e-09 Score=93.04 Aligned_cols=316 Identities=15% Similarity=0.166 Sum_probs=157.1
Q ss_pred chhhHHHhcCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCCC--chhHHHHHHHH
Q 006364 225 VISWTTMISMNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTN-FLSE--PSVCNCLITMY 300 (648)
Q Consensus 225 ~~~~~~li~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~ 300 (648)
+..-|.+++.+.++|+++|-+|.+. .| +..+-.++-+-|-+.|..+.|..+|..+.++- +..+ ......|..-|
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 3456788888999999999999873 22 22233345555666666666666666655431 1111 11122334445
Q ss_pred HhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHH
Q 006364 301 ARFESMQDSEKVFDELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQ 377 (648)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~ 377 (648)
...|-+|.|+.+|..+.+.+. .....|+..|-...++++|++.-++..+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k---------------------------- 169 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK---------------------------- 169 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------------------
Confidence 555555555555555543221 2233334444444444444444333332
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006364 378 RCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD 457 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 457 (648)
.+-.+... -+.. .|.-+...+....+.+.|..++++..+.. |+
T Consensus 170 --------~~~q~~~~---eIAq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~ 212 (389)
T COG2956 170 --------LGGQTYRV---EIAQ------------------------FYCELAQQALASSDVDRARELLKKALQAD--KK 212 (389)
T ss_pred --------cCCccchh---HHHH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHhhC--cc
Confidence 22111110 0001 12223333344445555555555555432 22
Q ss_pred HH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 006364 458 SI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLL 533 (648)
Q Consensus 458 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 533 (648)
.+ .=..+.+.....|+++.|.+.++...+. .|+ ..+...|..+|...|+.++...++.++. ..+....-..+.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~ 289 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLA 289 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHH
Confidence 21 1123334445556666666666655544 343 4555556666666666666665555433 334444434444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEE
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK--GDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGF 611 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f 611 (648)
..-....-.+.|.....+-+...|.--..|..+-.-.... |++.+...++..|....++..|.+.--.-+ -..|.|
T Consensus 290 ~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG--F~a~~l 367 (389)
T COG2956 290 DLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG--FTAHTL 367 (389)
T ss_pred HHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC--Ccceee
Confidence 3333333344455555555555555444444443333333 557788888888888777777765544444 344555
Q ss_pred e
Q 006364 612 S 612 (648)
Q Consensus 612 ~ 612 (648)
.
T Consensus 368 ~ 368 (389)
T COG2956 368 Y 368 (389)
T ss_pred e
Confidence 4
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=4.1e-12 Score=84.99 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3.8e-12 Score=85.15 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcC
Q 006364 121 KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGH 171 (648)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (648)
||+++||++|.+|++.| ++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~-~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAG-KFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999 999999999999999999999999999999875
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.5e-08 Score=96.63 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=165.5
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 410 (648)
+.-.|+...|...|+..+...+.+...|.-+..+|.... +.+.....|....+.+. -++.+|..-..++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADEN--QSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 455788889999999888833333333777777788888 88888889988887653 356677777777778889999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 411 SQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 411 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
|..=|++...- ++..|--+..+..+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999987653 5667777777888889999999999999886 555678888889999999999999999998863
Q ss_pred cCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 488 YHIEPS---------PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 488 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
+.|+ +.+.-.++. +.=.+++..|..++++.. ..| ....+.+|...-...|+.++|.++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 111111111 112388999999999876 333 45578889999999999999999999987653
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=2.2e-06 Score=84.97 Aligned_cols=428 Identities=11% Similarity=0.126 Sum_probs=240.5
Q ss_pred HHHhhcccChhhHhHHHHHHHHh-CCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHH
Q 006364 64 LSFCLDHEGFLFGLQLHSLIVKF-GLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 64 l~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~ 142 (648)
+....++|++...+..|+..... .+.....+|...+......|-++.+.+++++..+-++..-+-.|.-++..+ +.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d-~~~e 187 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD-RLDE 187 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-chHH
Confidence 34445566666666666665543 334445566666666666666677777777666655555666677777777 6667
Q ss_pred HHHHHHHHHHCC------CCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCC--CC--cchHHHHHHHHHhCCChHH
Q 006364 143 AILALIEMMRKG------LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYG--TH--VSVGNVLMSTYSKCEVTGD 212 (648)
Q Consensus 143 a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~ 212 (648)
|.+.+...+... .+-+...|..+-.-.++..+.-....+ +...+.|+. +| -..+++|.+-|.+.|.++.
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 666666554321 122333344433333333222211111 112222221 22 2467888888888888888
Q ss_pred HHHHHhcCCCC--CchhhHHHhc---------------------C------ChhhHHHHHHHHHHCC-C----------C
Q 006364 213 ANKVFRRMHDR--NVISWTTMIS---------------------M------NREDAVSLFKEMRLDG-V----------C 252 (648)
Q Consensus 213 A~~~~~~~~~~--~~~~~~~li~---------------------g------~~~~a~~~~~~m~~~g-~----------~ 252 (648)
|..+|++.... .+..++.+.. | +++-.+.-|+.+...+ + .
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 88888765441 1111111111 1 1222223333332221 0 0
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc-----
Q 006364 253 PNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLS------EPSVCNCLITMYARFESMQDSEKVFDELSCREI----- 321 (648)
Q Consensus 253 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----- 321 (648)
-+..+|..-+ -...|+..+-...+.+.++. +.| -...|..+...|-..|+++.|+.+|++..+-+-
T Consensus 347 ~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 0111111111 12234455555666666553 222 123477888889999999999999998865433
Q ss_pred --ccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCC-----------------CHHHHHHHHHHhccCchhhHHHHHHHHH
Q 006364 322 --ISWNALISGYAQNGLSLAAVQAFFGVIK-ESKP-----------------NAYTFGSVLNAVGAAEDISLKHGQRCHS 381 (648)
Q Consensus 322 --~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p-----------------~~~~~~~ll~a~~~~~~~~~~~a~~~~~ 381 (648)
.+|......=.++.+++.|+++.+.... .-.| +...|+..+..--..| .++....+++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g--tfestk~vYd 501 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG--TFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence 3444444555567788889888877654 2111 2233444444445566 7888889999
Q ss_pred HHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC----CChh-HHHHHHHHHHh---CCChHHHHHHHHHHHHCC
Q 006364 382 HIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE----KSEF-AWTAIISALAR---HGDYESVMNQFKEMENKG 453 (648)
Q Consensus 382 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 453 (648)
.++...+.....+.| ..-.+-...-++++.++++.-.. |++. .|+..+.-+.+ ..+.+.|..+|++..+ |
T Consensus 502 riidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 999877653333332 22233445568889999987553 4443 67776655543 3468999999999998 7
Q ss_pred CCCCHHHHHHHHHHh--cccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 006364 454 VRPDSITFLSVLTVC--GRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVD 502 (648)
Q Consensus 454 ~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~ 502 (648)
++|...-+..|+-|- .+-|....|+.++++... ++++. ...|+..|.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIK 630 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 888765444444332 345888888888888743 34443 445555543
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-07 Score=88.55 Aligned_cols=305 Identities=9% Similarity=-0.002 Sum_probs=211.2
Q ss_pred CCCChhhHHHHHHHH--hcCCchHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHH
Q 006364 251 VCPNDVTFIGLIHAI--SIGNLVKEGRMIHGLCIK-TNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNAL 327 (648)
Q Consensus 251 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 327 (648)
+.|...+....+.++ +..++-..+.+.+-.+.+ ..++.++.....+.+.+...|+.++|...|++..--|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 334444444444443 334444444444443333 34667788888999999999999999999998765554433322
Q ss_pred ---HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 006364 328 ---ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404 (648)
Q Consensus 328 ---i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (648)
.-.+.+.|+.+....+...+....+-....|..-........ +.+.|..+-...++... .+...+-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K--~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK--KFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh--hHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 334567788888877777776522222222211111122223 66677766666655432 122333333455667
Q ss_pred cCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHh-cccCcHHHHHH
Q 006364 405 RGSIFESQRVFNETQ--EK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVL-TVC-GRNGMIHKGRH 479 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~-~~~g~~~~a~~ 479 (648)
.|+.++|.-.|.... .| +..+|.-|+.+|...|++.+|..+-+..... +..+..+...+. ..| -....-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 899999999998654 44 7889999999999999999999988776553 445566665552 333 33344588999
Q ss_pred HHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 480 LFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 480 ~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
++++-. .+.|+ ....+.+...+.+.|+.+++..++++.. ..||....+.|...+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 998875 67998 8888899999999999999999999865 669999999999999999999999999999999999
Q ss_pred CCchh
Q 006364 558 AGSGS 562 (648)
Q Consensus 558 ~~~~~ 562 (648)
.+..+
T Consensus 503 ~~~~s 507 (564)
T KOG1174|consen 503 KSKRT 507 (564)
T ss_pred cchHH
Confidence 98544
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=3.9e-08 Score=91.81 Aligned_cols=285 Identities=13% Similarity=0.026 Sum_probs=190.9
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
|++..|.++..+-.+.+-.| ...|..-..+.-..|+.+.+..++.+..+.--.++..+.-+........|+.+.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 88888888887766654333 23445555666777888888888877777544555666666677777777777777666
Q ss_pred hhcC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 314 DELS---CREIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 314 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
+++. .+++........+|.+.|++.+...++..+.+ +.-.++..- ++
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-------------------~l---------- 227 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-------------------RL---------- 227 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-------------------HH----------
Confidence 5543 44666777777777788877777777777776 443322110 00
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
...+++.+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|.. ..+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 112334444444444444555556666653 35666667777788888888888888888877777662 2334
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
.+.+.++...-++..+.-.+.++-.| ..+.+|...|.+.+.|.+|...|+... .+|+...|.-+..++...|+.+.|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 56677777777777777766644444 667778888888888888888887644 568888888888888888888888
Q ss_pred HHHHHHHHhc
Q 006364 546 ERIADALMKM 555 (648)
Q Consensus 546 ~~~~~~~~~~ 555 (648)
.++.++.+-+
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8887776643
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.5e-09 Score=108.49 Aligned_cols=242 Identities=19% Similarity=0.253 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhcCCC----------Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHH
Q 006364 291 SVCNCLITMYARFESMQDSEKVFDELSCR----------EI-ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFG 359 (648)
Q Consensus 291 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 359 (648)
.+...|..+|...|+++.|..+++...+. .+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 34445666777777777777666554321 11 1223455566777777777777766642
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh
Q 006364 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDY 439 (648)
Q Consensus 360 ~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (648)
.....++... +.-..+++.|...|.+.|++++|...+
T Consensus 270 i~e~~~G~~h-------------------~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------ 306 (508)
T KOG1840|consen 270 IREEVFGEDH-------------------PAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ 306 (508)
T ss_pred HHHHhcCCCC-------------------HHHHHHHHHHHHHHhccCChHHHHHHH------------------------
Confidence 1111111111 112344556667778888888887764
Q ss_pred HHHHHHHHHHHHCCCC-CCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCC---C-hHHHHHHHHHHhhcCCHH
Q 006364 440 ESVMNQFKEMENKGVR-PDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEP---S-PDHYSCMVDMLGRVGRLE 511 (648)
Q Consensus 440 ~~A~~~~~~m~~~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~ 511 (648)
+.|++++++. .|.. |.. .-++.+...|...+.+++|..++....+.+. ..+ . ..+++.|...|...|+++
T Consensus 307 e~Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 307 ERALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 5566666662 2222 222 3456677778888888888888887765433 222 2 578999999999999999
Q ss_pred HHHHHHhhCC-------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHhcC
Q 006364 512 EAEELVGQIP-------G--GPG-LSVLQSLLGACRIHGNVEMGERIADALMKM----EPAG---SGSYVLMSNLYAEKG 574 (648)
Q Consensus 512 ~A~~~~~~~~-------~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g 574 (648)
+|+++++++. . .+. ...++.|...|...++.+.|.++|++...+ +|++ ..+|..|+.+|.+.|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 9999998765 1 122 346788889999999999999998887653 4544 457999999999999
Q ss_pred CcHHHHHHHHHHh
Q 006364 575 DWEMVAILRKGMK 587 (648)
Q Consensus 575 ~~~~a~~~~~~m~ 587 (648)
++++|.++.+.+.
T Consensus 465 ~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 465 NYEAAEELEEKVL 477 (508)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999988764
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.7e-08 Score=90.01 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=105.8
Q ss_pred CHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQEK-----SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.+.-|.+.|+..-+. .+.--.++.+++.-..++++++-.++....- +..|..--..+.+|.+..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 345566666544332 3344566777777777888888888877765 3333333345778889999999999999
Q ss_pred HHhHHhcCCCCChHHH-HHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 482 DSMLKDYHIEPSPDHY-SCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSL-LGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
-..... .++ +..+| ..|..+|.+.+..+-|.+++-++..+.+..++..+ .+-|.+.+.+--|-++|..+..++|..
T Consensus 417 ~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 417 IRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877422 222 34444 55678999999999999999888755555554444 478999999999999999998888753
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=3.3e-08 Score=92.32 Aligned_cols=275 Identities=13% Similarity=0.117 Sum_probs=180.7
Q ss_pred cCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 303 FESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 303 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
.|++..|+++..+-.+. .+..|..-..+-.+.|+.+.+-.++.+..+ ...++....-+........+ +.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~--d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR--DYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC--CchhHHH
Confidence 35666666655554322 122333333444555666666666666555 33444444444445555555 5666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCC-----------hhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKS-----------EFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
-...+.+.+. -.+.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5555555442 344555666677777777777777777666532 2367777777777777777666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCC
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPG 525 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 525 (648)
+...+ .+-++..-.+++.-+...|+.++|.++.++..++ +..|+. ..++ ...+-++.+.=.+..++.. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 66554 5666666677788888999999999999988877 666661 1122 2334555544444443322 2234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+..+.+|+..|.+++.+.+|...++.++...|+. ..|..++.+|.+.|+..+|..++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4789999999999999999999999988887764 789999999999999999999988765
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=5.3e-07 Score=91.24 Aligned_cols=433 Identities=14% Similarity=0.096 Sum_probs=242.0
Q ss_pred HhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhh
Q 006364 85 KFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVS 161 (648)
Q Consensus 85 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t 161 (648)
...+..|+.+|..|.=++.++|+++.+.+.|++... .....|+.+-..+...| ....|+.+++.-....-.|+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcch
Confidence 334678899999999999999999999999998764 35567999999999999 77899999887665443454444
Q ss_pred HHH-HHHHhc-CCCChhHHHHHHHHHHHhc--C--CCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCC
Q 006364 162 FTS-AASACG-HEKNLELGKQIHGVSIKMG--Y--GTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMN 235 (648)
Q Consensus 162 ~~~-ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~ 235 (648)
--. .-+.|. +.+..+++..+-..++... . ......|-.+--+|...-. +.+..+-.. ..
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~seR~---~~ 459 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKSERD---AL 459 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChHHHH---HH
Confidence 333 333343 4455666666555555421 0 1111222222222221100 000000000 12
Q ss_pred hhhHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHh
Q 006364 236 REDAVSLFKEMRLDG-VCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFD 314 (648)
Q Consensus 236 ~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 314 (648)
..++++.+++-.+.+ -.|+...|.++ -++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 245555555554432 22333333222 234455666666666666666555556666666666666666666666555
Q ss_pred hcCCCCcccHHHH---HHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 315 ELSCREIISWNAL---ISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 315 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
...+.-..-++.+ +..-..-++.++++.....+.. .-.+.. .+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~---------------------q~----------- 585 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV---------------------QQ----------- 585 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH---------------------hh-----------
Confidence 4321111111100 1111123444444444444332 000000 00
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcC----CC-C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--C----
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQ----EK-S-EFAWTAIISALARHGDYESVMNQFKEMENKGVRP--D---- 457 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~---- 457 (648)
.|+-....+.+..+. ++ + +.++.-+.. ... -+.+.+..-.. |...-+.| +
T Consensus 586 ---------------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 586 ---------------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-LPSSTVLPGPDSLWY 647 (799)
T ss_pred ---------------hhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-cCcccccCCCCchHH
Confidence 000111112222111 00 1 111111111 111 00000000000 11111222 2
Q ss_pred --HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 006364 458 --SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSL 532 (648)
Q Consensus 458 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 532 (648)
...|......+.+.+..++|...+.+.. ++.|- ...|......+...|.+++|.+.|.... .+.++.+..++
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 1234455566788888888888888774 55665 7778888888999999999999887654 44456788889
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 533 LGACRIHGNVEMGER--IADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...+...|+-..|+. +...+.+++|.++..|..|+.++.+.|+.++|.+.+....+
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999998888888 99999999999999999999999999999999999987644
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=5.2e-08 Score=88.20 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=177.1
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHhhcCCHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG-LDSD--PIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~ 409 (648)
-+++.++|+++|-+|.+..+.+..+--++-+.+-+.| ..+.|..+|..+.++. ++.+ ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3456677777777776644445555555666666667 7777777777766532 1111 123345677788999999
Q ss_pred HHHHHHhhcCCCCh---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCcHHHHHHHHH
Q 006364 410 ESQRVFNETQEKSE---FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS----ITFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 410 ~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
.|+.+|..+.+.+. .....|+..|-...+|++|++.-+++.+.|-.+.. ..|.-+........+++.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999887443 45667899999999999999999999987655543 356677777888899999999999
Q ss_pred HhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 483 SMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG--LSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 483 ~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
+..+. .|+ +..--.+.+.....|+++.|.+.++... ..|+ +.+...|..+|...|+.+++...+.++.+..+.
T Consensus 205 kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 98754 676 5566677899999999999999999876 3343 346788889999999999999999999988776
Q ss_pred CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 559 GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
... -..+...-....-.+.|...+
T Consensus 282 ~~~-~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 282 ADA-ELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred ccH-HHHHHHHHHHhhChHHHHHHH
Confidence 543 334444444333344444444
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=1.2e-08 Score=107.52 Aligned_cols=245 Identities=12% Similarity=0.045 Sum_probs=173.4
Q ss_pred CcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc---------cCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 336 LSLAAVQAFFGVIKESKPNAYTFGSVLNAVG---------AAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 336 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
..++|+..|++..+..+-+...+..+..++. ..+ +.++|...++...+.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~--~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQN--AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccch--HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3467777777776643444445544433322 223 5788888888888765 336677788888899999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHH
Q 006364 407 SIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 407 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998664 3 4667888999999999999999999999884 55532 33334445666889999999999
Q ss_pred HhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 483 SMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGL-SVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 483 ~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+..+. ..|+ ...+..+..+|...|++++|...++++. ..|+. ..++.+...+...| +.|...++.+.+..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88654 2354 6667888899999999999999998865 33443 34455555666667 47888788877654333
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 560 SGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
+..+..+..+|+-.|+-+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333377788888888777766 7776543
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.4e-08 Score=97.72 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVC 468 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 468 (648)
..+..+...|.+.|+.++|...|+...+ .+...|+.+...+...|++++|+..|++..+ +.|+ ..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3455555666666777777766665543 2456677777777777777777777777665 3444 45556666666
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
...|++++|.+.|+...+. .|+..........+...++.++|...+++.....+...|.. .......|+...+ ..
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HH
Confidence 6677777777777766543 45422111112223345667777776654321111122221 1222234444333 23
Q ss_pred HHHHH-------hcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 549 ADALM-------KMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 549 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+. ++.|..+.+|..++.+|...|++++|...+++..+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333 33455556777777777777777777777766554
No 66
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=6.6e-06 Score=85.60 Aligned_cols=157 Identities=19% Similarity=0.282 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
+..|+.+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++....++ .-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 457999999999999999999887432 35678999999999999999999999877665 6666655 46888
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
+|++.+++.+-++++. .|+..-...++.-|...|.++.|.-+|.. .+.|..|+..+...|.++.|.+.
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777654 57888888999999999999988888764 46788888888888998888877
Q ss_pred HHHHhhCCCccCCceeEE
Q 006364 583 RKGMKSKGVRKEVGFSWA 600 (648)
Q Consensus 583 ~~~m~~~~~~~~~~~s~~ 600 (648)
-++.......|....+-+
T Consensus 1243 aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hhhccchhHHHHHHHHHh
Confidence 665544444444433333
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2e-05 Score=82.13 Aligned_cols=532 Identities=14% Similarity=0.126 Sum_probs=261.9
Q ss_pred ccccCCChhHHHHHhhcCCC--CCcch-----HHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccCh
Q 006364 3 MYCKSGQFDKALCIFNNLNN--PDIVS-----WNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGF 73 (648)
Q Consensus 3 ~~~~~g~~~~A~~~f~~~~~--p~~~~-----~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 73 (648)
.|.+.|-...|++.|..+.. +.+++ =.-+..-|.+.. ++.+.++.|...+++-|..+.-.+..-|...-..
T Consensus 615 LCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~ 694 (1666)
T KOG0985|consen 615 LCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGA 694 (1666)
T ss_pred HHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence 35677888888888887653 22221 112344455555 8899999999988887777766666666554445
Q ss_pred hhHhHHHHHHHHh-----------CCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-------------------C--
Q 006364 74 LFGLQLHSLIVKF-----------GLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-------------------K-- 121 (648)
Q Consensus 74 ~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-- 121 (648)
+...++|+..... ++..|+.+.-..|.+.++.|++.+..++..+-.- |
T Consensus 695 ~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLi 774 (1666)
T KOG0985|consen 695 QALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLI 774 (1666)
T ss_pred HHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceE
Confidence 5555666554431 3467888888999999999999999888765431 1
Q ss_pred ----------CcchH------HHHHHHHHcCCCChHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHhcCCCC
Q 006364 122 ----------DSVSW------NAILSGYTQDGDYGVEAILALIEMMRKGLRL-----------DHVSFTSAASACGHEKN 174 (648)
Q Consensus 122 ----------~~~~~------~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~ 174 (648)
|.+.| --.|..|++.- ++.+.-.+.-.++...+.- ..+....|..-+-+.++
T Consensus 775 iVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkv-Nps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNR 853 (1666)
T KOG0985|consen 775 IVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKV-NPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNR 853 (1666)
T ss_pred EEecccccHHHHHHHHHHhhHHHHHHHHHhhc-CCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhh
Confidence 11111 12344444433 2222222222222211100 01112233344455666
Q ss_pred hhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH----------HHHhcCCC----------------------
Q 006364 175 LELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDAN----------KVFRRMHD---------------------- 222 (648)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----------~~~~~~~~---------------------- 222 (648)
+..-...++..+..|. .|..++|+|...|..+++-.+-. .+=+-..+
T Consensus 854 LklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~v 932 (1666)
T KOG0985|consen 854 LKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINV 932 (1666)
T ss_pred HHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHh
Confidence 6666777777777774 57888899988887665433210 00000111
Q ss_pred -----------------CCchhhHHHhcCChhhHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006364 223 -----------------RNVISWTTMISMNREDAVSLFKEMRLDGVC--PNDVTFIGLIHAISIGNLVKEGRMIHGLCIK 283 (648)
Q Consensus 223 -----------------~~~~~~~~li~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 283 (648)
.|...|+.++...-.--..+.++...-+++ -|.......++++...+-..+-.+++++++-
T Consensus 933 cNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL 1012 (1666)
T KOG0985|consen 933 CNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVL 1012 (1666)
T ss_pred cCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 233333333332222223344444443332 1334444555555555555555555555442
Q ss_pred hc--CCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHH
Q 006364 284 TN--FLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSV 361 (648)
Q Consensus 284 ~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 361 (648)
.. +..+...-|.|+-.-.+. +.....+..+++..-|.. .+......++-+++|..+|++.- .+......+
T Consensus 1013 ~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VL 1084 (1666)
T KOG0985|consen 1013 DNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQVL 1084 (1666)
T ss_pred CCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH
Confidence 11 111222223333222222 233333444443322211 11223344555667776665542 233333333
Q ss_pred HH--------------------------HhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHH
Q 006364 362 LN--------------------------AVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVF 415 (648)
Q Consensus 362 l~--------------------------a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 415 (648)
+. |-.+.+ ...+|..-|-. .-|+..|..+++...+.|.+++-.+.+
T Consensus 1085 ie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~--~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGG--LVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcC--chHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33 222222 22222222111 123444444555555555555554444
Q ss_pred hhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC
Q 006364 416 NETQEK--SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS 493 (648)
Q Consensus 416 ~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 493 (648)
...+++ .+..=+.||-+|++.++..+-.+++ .-||......+..-|...|.++.|.-+|...
T Consensus 1157 ~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred HHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 333221 2222334555555555444333222 2344444445555555555555555555433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH------------------------------cCCHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI------------------------------HGNVE 543 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~g~~~ 543 (648)
..|..|...+...|.++.|.+.-++.. +..+|..+--+|.. .|-++
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 346667777777777777776665543 44455555555544 44444
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 544 MGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
+-..+++..+.++..+.+.|.-|+-+|++
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 44444444444445555555555555554
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.1e-08 Score=88.15 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=137.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
..-|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 445677889999999999999998884 454 5788888888999999999999999886 55886 8888888999
Q ss_pred HhhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH
Q 006364 504 LGRVGRLEEAEELVGQIPGGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 579 (648)
+|..|++++|...|++....|. ..+|..++.+..+.|+.+.|+..+++.++.+|+.+.....+++.+...|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988764443 457888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 006364 580 AILRKGMKSKGV 591 (648)
Q Consensus 580 ~~~~~~m~~~~~ 591 (648)
.-++++...++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988876654
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1e-07 Score=92.78 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=142.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
+++.+.+++++..... .++....+..-|.++...|+...-..+-..+++. .|..+.+|-++.--|...|+..+|++.|
T Consensus 258 c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 258 CRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred ChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 4566666666665543 2344445555566777777766666555555553 4667778888888888889999999999
Q ss_pred hhcCCCCc---ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 314 DELSCREI---ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 314 ~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
.+...-|. ..|-.+...|+-.|..++|+..|...-+-++-...-+--+---|.+.+ +.+.|.++|....... +.
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~--n~kLAe~Ff~~A~ai~-P~ 412 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN--NLKLAEKFFKQALAIA-PS 412 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc--cHHHHHHHHHHHHhcC-CC
Confidence 88765443 678889999999999999999888776622221111122223344555 6677777766655432 44
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEK----------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
|+.+.+-+.-.....+.+.+|..+|+....+ -..+++.|..+|.+.+++++|+..|++.... .+-|..|
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~ 491 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDAST 491 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhH
Confidence 5666666666666666666666666543311 1122444444444444444444444444432 2223344
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHh
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
+.++.-.+...|+++.|+..|.+.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHH
Confidence 444444444444444444444443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=1.4e-08 Score=95.03 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+. .|+ ...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL---NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHH
Confidence 4567888999999999999999999998752 334677788888999999999999999998754 454 67888889
Q ss_pred HHHhhcCCHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 502 DMLGRVGRLEEAEELVGQIPGG----PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
..+...|++++|.+.+++.... .....+..+...+...|+++.|...++++.+..|.++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987532 235567788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 006364 578 MVAILRKGMKSK 589 (648)
Q Consensus 578 ~a~~~~~~m~~~ 589 (648)
+|.+.+++..+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=7.1e-08 Score=96.75 Aligned_cols=240 Identities=13% Similarity=0.189 Sum_probs=141.2
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHh-----cC-CCCch-hHHHHHHHHHhcCChHHHHHHHhhcCC--------C
Q 006364 255 DVTFIGLIHAISIGNLVKEGRMIHGLCIKT-----NF-LSEPS-VCNCLITMYARFESMQDSEKVFDELSC--------R 319 (648)
Q Consensus 255 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--------~ 319 (648)
..+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888999999999999999887764 21 12222 233466788899999999999877631 1
Q ss_pred C---cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCC-CCch-hH
Q 006364 320 E---IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGL-DSDP-IV 394 (648)
Q Consensus 320 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~ 394 (648)
+ ..+++.|...|.+.|++++|...+++..+ |+.. ..|. .|.. ..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~--~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEK--LLGASHPEVAAQ 327 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHH--hhccChHHHHHH
Confidence 1 24566666677777777777776655432 1111 0000 0111 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD----SITFLSVLTVCGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~ 470 (648)
.+.+...+...+++++|..++.. |++++.. -+.++ ..+++.+...|.+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~------------------------al~i~~~----~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQK------------------------ALKIYLD----APGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHH------------------------HHHHHHh----hccccchHHHHHHHHHHHHHHH
Confidence 22333334444444444444321 1111111 01222 2456666666667
Q ss_pred cCcHHHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDY-----HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGPG-LSVLQSLLGA 535 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~ 535 (648)
.|++++|.++|++++... +..+. ...++.|...|.+.++.++|.++|.+.. ..|+ ..+|..|...
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 777777777766665431 12232 4556667777777777777777665533 2233 3478888888
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 006364 536 CRIHGNVEMGERIADALM 553 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~ 553 (648)
|...|+++.|+++.+.+.
T Consensus 460 Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 888888888888888776
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=3.2e-08 Score=104.23 Aligned_cols=209 Identities=13% Similarity=0.080 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHh---------hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYG---------KRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDY 439 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 439 (648)
+.++|...++...+.... +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 678888888888865422 3445555555443 23458899999987764 3677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 440 ESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 440 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
++|+..|++..+. .|+ ...+..+..++...|++++|+..+++..+ +.|+ ...+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999984 455 56777888889999999999999999974 4676 333344455567789999999999
Q ss_pred hhCCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 518 GQIPG--GP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 518 ~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++... +| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 88642 34 34556777788889999999999999998888888888888999999888 478887777654
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=2.9e-05 Score=77.30 Aligned_cols=470 Identities=13% Similarity=0.140 Sum_probs=280.2
Q ss_pred hHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCC----------CcchHHH
Q 006364 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK----------DSVSWNA 128 (648)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ 128 (648)
.|...+......+-++-+..++++.++. ++..-+-.|..+++.+++++|.+.+..+... +-..|+-
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 3444444445556666677777766643 3334666777778888888888777766532 3334655
Q ss_pred HHHHHHcCCCChH---HHHHHHHHHHHCCCCCCh--hhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006364 129 ILSGYTQDGDYGV---EAILALIEMMRKGLRLDH--VSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMST 203 (648)
Q Consensus 129 li~~~~~~g~~~~---~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 203 (648)
+-...+++. +.- ..-.+++.+.. .-+|. ..+.+|.+-|.+.|.++.|..+++...+.-. .+.-++.+-+.
T Consensus 216 lcdlis~~p-~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~ 290 (835)
T KOG2047|consen 216 LCDLISQNP-DKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDA 290 (835)
T ss_pred HHHHHHhCc-chhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHH
Confidence 555555544 211 11122222221 22443 3567777777788888888877777665422 22223333333
Q ss_pred HHhC----------------C------ChHHHHHHHhcCCC---------------CCchhhHHHhc---CChhhHHHHH
Q 006364 204 YSKC----------------E------VTGDANKVFRRMHD---------------RNVISWTTMIS---MNREDAVSLF 243 (648)
Q Consensus 204 ~~~~----------------g------~~~~A~~~~~~~~~---------------~~~~~~~~li~---g~~~~a~~~~ 243 (648)
|+.- | +++-...-|+.+.. .++..|..-.. |+..+-...+
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH
Confidence 3221 1 12222233333322 23344443333 7788888888
Q ss_pred HHHHHCCCCCC------hhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChHHHHHHHh
Q 006364 244 KEMRLDGVCPN------DVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE---PSVCNCLITMYARFESMQDSEKVFD 314 (648)
Q Consensus 244 ~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 314 (648)
.+..+. +.|. ...|..+.+-|-..|+++.|+.+|++..+..++-- ..+|..-..+-.+..+++.|.++.+
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 887664 3332 23466777888899999999999999887654432 3455555566667788889988887
Q ss_pred hcC---CC------------------CcccHHHHHHHHHhcCCcHHHHHHHHHhHh-CC-CCCHH-HHHHHHHHhccCch
Q 006364 315 ELS---CR------------------EIISWNALISGYAQNGLSLAAVQAFFGVIK-ES-KPNAY-TFGSVLNAVGAAED 370 (648)
Q Consensus 315 ~~~---~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~p~~~-~~~~ll~a~~~~~~ 370 (648)
... .+ +...|...++.--..|-++....+|+++.. .+ .|... -|..+|. ...
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---eh~- 525 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---EHK- 525 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhH-
Confidence 653 11 223566666666667788888888888888 43 34322 2333333 222
Q ss_pred hhHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHhh---cCCHHHHHHHHhhcCCCChhHH-HHHHHHH----HhCCChHH
Q 006364 371 ISLKHGQRCHSHIIKVGLDSDP-IVGSALLDMYGK---RGSIFESQRVFNETQEKSEFAW-TAIISAL----ARHGDYES 441 (648)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~-~~li~~~----~~~g~~~~ 441 (648)
-++++.++++.-+..--.|+. .+|+.-+.-+.+ ..+++.|..+|++..+.-+..+ -++.-.| -..|-...
T Consensus 526 -yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 -YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred -HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566666666554433223443 345554444433 3478999999998775322211 1222223 34688899
Q ss_pred HHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHH
Q 006364 442 VMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS---PDHYSCMVDMLGRVGRLEEAEEL 516 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~ 516 (648)
|+.+|++.... +++.. ..|+..|.--...=-+.....+|++.++. -|+ ....-...+.=++.|..+.|..+
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999997654 66654 56777775443333344556777777754 565 33344456777889999999999
Q ss_pred HhhCC--CC--CCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 517 VGQIP--GG--PGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 517 ~~~~~--~~--~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
+.... .. .+...|.+.-..-.+|||-+.-.+
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 87644 22 466789999888999999444333
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.3e-06 Score=83.01 Aligned_cols=466 Identities=14% Similarity=0.112 Sum_probs=246.9
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHH--HHHHHH--cCC
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNA--ILSGYT--QDG 137 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g 137 (648)
+=+..+...+++++|.+....+...+ +.|...+..=+-++.+.+++++|+.+.+.-... .+++. +=.+|| +.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34455667888999999999888776 555666667677788889999999776543321 22222 244554 456
Q ss_pred CChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhCCChHHHHH
Q 006364 138 DYGVEAILALIEMMRKGLRLDHV-SFTSAASACGHEKNLELGKQIHGVSIKMGYGT-HVSVGNVLMSTYSKCEVTGDANK 215 (648)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 215 (648)
..++|+..+. |..++.. +...-...|-+.+++++|..+|..+.+++.+. +...-..++.+-..
T Consensus 94 -k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--------- 158 (652)
T KOG2376|consen 94 -KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--------- 158 (652)
T ss_pred -cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------
Confidence 7788888777 3333332 44444455667777777777777776665321 11111111111000
Q ss_pred HHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH---HHhcCCchHHHHHHHHHHHHhcCCCCchh
Q 006364 216 VFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIH---AISIGNLVKEGRMIHGLCIKTNFLSEPSV 292 (648)
Q Consensus 216 ~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (648)
.. -..|......| ..+|..+.+ .+...|++.+|.++++...+.+.+.
T Consensus 159 ------------------------l~-~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~---- 208 (652)
T KOG2376|consen 159 ------------------------LQ-VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK---- 208 (652)
T ss_pred ------------------------hh-HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh----
Confidence 00 00122222333 234443333 2345677777777766654322100
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHH---HHhccCc
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVL---NAVGAAE 369 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll---~a~~~~~ 369 (648)
| ..++.. -.++-.++ + ..---|.-.+...|+..+|..+|....+..++|........ .+...-.
T Consensus 209 ---l-----~~~d~~-eEeie~el---~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 209 ---L-----EDEDTN-EEEIEEEL---N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred ---h-----cccccc-hhhHHHHH---H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcccc
Confidence 0 000000 00000000 0 00112233445566666666666666664444442222211 1111111
Q ss_pred hhhHHH--------------HHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHH
Q 006364 370 DISLKH--------------GQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKS-EFAWTAIISALA 434 (648)
Q Consensus 370 ~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 434 (648)
++-. +......+.+ .-......-+.++.+|. +..+.+.++-....... ...+.+++....
T Consensus 276 --~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t 350 (652)
T KOG2376|consen 276 --NYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEAT 350 (652)
T ss_pred --ccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence 1100 0001111110 00111222234555553 45566666666665432 334444444332
Q ss_pred --hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH--------HhHHhcCCCCChHHHHHHHHHH
Q 006364 435 --RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFD--------SMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 435 --~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
+.....+|.+++...-+....-........+.-....|+++.|.+++. ...+. +.. +.+...++..+
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~ 427 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALY 427 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHH
Confidence 223577788888777664222223444555566688999999999998 44322 333 44556677888
Q ss_pred hhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 505 GRVGRLEEAEELVGQIP--------GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.+.++.+.|..++.+.. .++. ..+|.-+...-.++|+-++|...++++.+.+|++......+.-+|++. +
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d 506 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-D 506 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-C
Confidence 88887666666655433 2222 223444555567789999999999999999999999999999999875 3
Q ss_pred cHHHHHHHHHHhhCCCccCCceeEEEE
Q 006364 576 WEMVAILRKGMKSKGVRKEVGFSWADV 602 (648)
Q Consensus 576 ~~~a~~~~~~m~~~~~~~~~~~s~~~~ 602 (648)
.+.|..+- +.+.|.++..-++|
T Consensus 507 ~eka~~l~-----k~L~p~~~l~~vdV 528 (652)
T KOG2376|consen 507 PEKAESLS-----KKLPPLKGLKAVDV 528 (652)
T ss_pred HHHHHHHh-----hcCCCcccchhcCc
Confidence 45555553 34445555443333
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.8e-06 Score=76.86 Aligned_cols=312 Identities=9% Similarity=0.006 Sum_probs=183.0
Q ss_pred CCCCchhHHHHHHHHHhc--CChHHHHHHHhhcC-----CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCC---CCH
Q 006364 286 FLSEPSVCNCLITMYARF--ESMQDSEKVFDELS-----CREIISWNALISGYAQNGLSLAAVQAFFGVIKESK---PNA 355 (648)
Q Consensus 286 ~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---p~~ 355 (648)
++|...+...-+.+++.+ ++...|...+-.+. ..|+.....+..++...|+.++|+..|++...-.+ ...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 444444444445555543 44444443332222 33667778888888889999999888887765111 112
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 006364 356 YTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISA 432 (648)
Q Consensus 356 ~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 432 (648)
..|..++. +.| +.+....+...+.... +-+...|-.-........+++.|+.+-++..+. ++..+-.-...
T Consensus 270 D~Ya~LL~---~eg--~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~l 343 (564)
T KOG1174|consen 270 DLYAVLLG---QEG--GCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRL 343 (564)
T ss_pred HHHHHHHH---hcc--CHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHH
Confidence 22333332 333 4444444444443221 011111222222233445677777766655443 34444444456
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHhh-cCC
Q 006364 433 LARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMV-DMLGR-VGR 509 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-~~~~~-~g~ 509 (648)
+.+.|+.++|.-.|+..+. +.| +..+|-.|+.+|...|...+|.-.-+...+. +.-+..+...+. ..+.- ...
T Consensus 344 L~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchh
Confidence 7777777887777777765 343 4577778888887777777777666655433 122344444332 22222 223
Q ss_pred HHHHHHHHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 510 LEEAEELVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 510 ~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
-|+|.+++++.. .+|+ ....+.+...|...|..+.+..++++.+...|++ ..+..|++++...+.+++|.+.+....
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467777777644 4454 3355666677777788888888888777766654 677777888877777777777776443
Q ss_pred hCCCccCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 588 SKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 588 ~~~~~~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
...|+.+.-.+.|++|.++++
T Consensus 499 ----------------------------r~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 499 ----------------------------RQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred ----------------------------hcCccchHHHHHHHHHHhccC
Confidence 456777777888888888887
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.7e-08 Score=91.26 Aligned_cols=224 Identities=12% Similarity=0.040 Sum_probs=141.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 006364 325 NALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404 (648)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (648)
+.+..+|.+.|.+.+|.+.|+.-.. ..|-+.||..+ -..|.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-q~~~~dTfllL-------------------------------------skvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-QFPHPDTFLLL-------------------------------------SKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-cCCchhHHHHH-------------------------------------HHHHHH
Confidence 4566677777777777776655443 22333344444 444555
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 405 RGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
..++..|+.+|.+..+ | |+....-+...+-..++.++|.++|++..+. -..+......+...|...++.+-|+.+|
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHH
Confidence 5555555555554443 2 2222233444455555666666666666553 1223334444445555566666666666
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP---GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
+.+.+- |+ -+.+.|+.+.-++.-.++++-++.-|.+.. ..| -..+|..|.......||+..|.+.|+.++..+
T Consensus 348 RRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 666543 43 234556666666666666666666555443 122 34578888888888999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
|++...++.|+-+-.+.|+.++|..+++..++.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999999999877654
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.6e-08 Score=91.36 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=172.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC--CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHH-HHHHHHhccC
Q 006364 292 VCNCLITMYARFESMQDSEKVFDELS--CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF-GSVLNAVGAA 368 (648)
Q Consensus 292 ~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~-~~ll~a~~~~ 368 (648)
.-+-+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..++..|+.+|.+-.... |..+|| ..+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~A------ 297 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQA------ 297 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhH------
Confidence 34678899999999999999998764 4577899999999999999999999998876643 334443 2222
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHH
Q 006364 369 EDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
..+...++.++|.++++...+. ++.+..++..+|.-.++.+-|+..
T Consensus 298 -------------------------------Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 298 -------------------------------RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred -------------------------------HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 2233345667777777765542 556666677788888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-- 521 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 521 (648)
|+++...|+. +...|+.+.-+|...+++|-++..|...... --.|+ .++|-.+.....-.|++.-|.+.|+-..
T Consensus 347 YRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 8888888754 5667777877888888888888888887655 44455 6778888888888888888888888665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 522 GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 522 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.......++.|.-.-.+.|+++.|..++..+....|.-.+
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 2244567888887778888888888888888888776443
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.9e-06 Score=77.92 Aligned_cols=384 Identities=12% Similarity=0.036 Sum_probs=206.3
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHH
Q 006364 168 ACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMR 247 (648)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~ 247 (648)
++-+.|++++|...+..+.+. -.++..++-.|..++.-.|.+.+|..+-...++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k------------------------- 119 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK------------------------- 119 (557)
T ss_pred HHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-------------------------
Confidence 334555555555555555442 234444444455555555666666665443322
Q ss_pred HCCCCCChhhH-HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCC--cccH
Q 006364 248 LDGVCPNDVTF-IGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCRE--IISW 324 (648)
Q Consensus 248 ~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 324 (648)
.... ..+++...+.++-++-..+++.+.+.- .---+|..+....-.+++|++++.++...+ -...
T Consensus 120 -------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 120 -------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred -------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 1112 222333334455555444444443321 111233333334446677777777765433 2344
Q ss_pred HHH-HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccC--chhhHHHHHH----------HHHHHHHhCCC--
Q 006364 325 NAL-ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAA--EDISLKHGQR----------CHSHIIKVGLD-- 389 (648)
Q Consensus 325 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~--~~~~~~~a~~----------~~~~~~~~~~~-- 389 (648)
|.- .-+|.+..-++-+.+++.--.+.++-+....+.......+. |+...++-.. ....+.++++.
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEE
Confidence 433 34566666677676666666554444444433322221111 1000111111 11222222210
Q ss_pred ----------C-----chhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC-------ChHHHHHHHH
Q 006364 390 ----------S-----DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHG-------DYESVMNQFK 447 (648)
Q Consensus 390 ----------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~ 447 (648)
| -+..--.|+-.|.+.+++.+|..+...+....+.-|-.-.-.++..| ...-|.+.|+
T Consensus 268 rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 1 12223346667889999999999988877555444433333333333 3444555555
Q ss_pred HHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC--C
Q 006364 448 EMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG--P 524 (648)
Q Consensus 448 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 524 (648)
-.-+++...|.. ---+...++.-..++++.+-++++...- =..-|...+ .+..+++..|.+.+|+++|-.+..+ .
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 554555554432 2334455556667888888888888543 233334444 4688999999999999999877633 4
Q ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC-CCC-chhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccC
Q 006364 525 GLSVLQSLLGACR-IHGNVEMGERIADALMKME-PAG-SGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKE 594 (648)
Q Consensus 525 ~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 594 (648)
+..+|.+++.-|. ..+..+. +++.+++.+ |.+ ......+++.+.+.+.+--|.+.+..+......|+
T Consensus 426 n~~~Y~s~LArCyi~nkkP~l---AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQL---AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchH---HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 6677877776555 4555544 566666665 333 33455778889999999889999988876554443
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=6.6e-07 Score=86.14 Aligned_cols=226 Identities=9% Similarity=0.014 Sum_probs=144.5
Q ss_pred CcHHHHHHHHHhHh--CCCCC--HHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHH
Q 006364 336 LSLAAVQAFFGVIK--ESKPN--AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFES 411 (648)
Q Consensus 336 ~~~~A~~~~~~m~~--~~~p~--~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 411 (648)
..+.++..+.++.. ...|+ ...|..+-..+...| +.+.|...+....+.. +.++..|+.+...|...|++++|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455555555554 12221 233444444555566 6666666666666644 33567788888889999999999
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhc
Q 006364 412 QRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 412 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 488 (648)
...|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999987754 3 5678888889999999999999999998874 555432222222345567899999999776433
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHH--HHHHhh-CCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 006364 489 HIEPSPDHYSCMVDMLGRVGRLEEA--EELVGQ-IPGG-----PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG- 559 (648)
Q Consensus 489 ~~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~- 559 (648)
..|+...+ .++.. ..|+..++ .+.+.+ .... .....|..+...+...|+.++|...|+++++.+|.+
T Consensus 195 -~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23443222 23332 34554333 332322 1111 234578999999999999999999999999999754
Q ss_pred chhHHHHHHHHH
Q 006364 560 SGSYVLMSNLYA 571 (648)
Q Consensus 560 ~~~~~~l~~~~~ 571 (648)
...-..++....
T Consensus 271 ~e~~~~~~e~~~ 282 (296)
T PRK11189 271 VEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.5e-05 Score=81.42 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
=++.|.+.++-+.+..|++..+|..-..+|.+.|++--|.+.+++
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 468899999999999999999999999999999999988887653
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=0.00011 Score=73.62 Aligned_cols=456 Identities=12% Similarity=0.094 Sum_probs=213.6
Q ss_pred hhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHH
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEA 143 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a 143 (648)
|...+++..++.+.+.+.+. .+....+....-=.+...|+-++|......-.. ++.++|..+--.+.... ++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHHHH
Confidence 44567788888888887773 333334433333334556888888887766554 45677887766666666 89999
Q ss_pred HHHHHHHHHCCCCCChh-hHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC
Q 006364 144 ILALIEMMRKGLRLDHV-SFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD 222 (648)
Q Consensus 144 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 222 (648)
+..|...... .||.. .+.-+---=++.++++........+.+.. +.....|..+..++.-.
T Consensus 95 iKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~--------------- 156 (700)
T KOG1156|consen 95 IKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL--------------- 156 (700)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH---------------
Confidence 9999988874 34443 22211111122233332222222222210 00111122222222222
Q ss_pred CCchhhHHHhcCChhhHHHHHHHHHHCC-CCCChhhHHHHHHHH------hcCCchHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 223 RNVISWTTMISMNREDAVSLFKEMRLDG-VCPNDVTFIGLIHAI------SIGNLVKEGRMIHGLCIKTNFLSEPSVCNC 295 (648)
Q Consensus 223 ~~~~~~~~li~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (648)
|+...|..++++..+.. -.|+...|.....-+ ...|..+.|.+.+..-... +......-..
T Consensus 157 -----------g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ 224 (700)
T KOG1156|consen 157 -----------GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEET 224 (700)
T ss_pred -----------HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhh
Confidence 56666666666665543 245555554433322 3445555555544432221 1111222233
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCc--ccHHH-HHHHHHhcCCcHHHH-HHHHHhHhCCC----CCHHHHHHHHHHhcc
Q 006364 296 LITMYARFESMQDSEKVFDELSCREI--ISWNA-LISGYAQNGLSLAAV-QAFFGVIKESK----PNAYTFGSVLNAVGA 367 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~~~----p~~~~~~~ll~a~~~ 367 (648)
-.+.+.+.+++++|..++..+..+++ .-|.. +..++.+--+..+++ .+|.......+ |-....+ +++ .
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---G 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---c
Confidence 44556667777777777776654433 33333 233333333333343 33433333111 1111111 111 1
Q ss_pred CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 368 AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
.. -.+....++....+.|+++ ++..+...|-.-...+ +.+++ +..|...+.+. ......+
T Consensus 301 ee--l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~L----vt~y~~~L~~~-------~~f~~~D 360 (700)
T KOG1156|consen 301 EE--LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKL----VTSYQHSLSGT-------GMFNFLD 360 (700)
T ss_pred ch--hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHH----HHHHHhhcccc-------cCCCccc
Confidence 11 2233333444444555443 2223333332111111 11110 00111111100 0000000
Q ss_pred HHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 006364 448 EMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--G 522 (648)
Q Consensus 448 ~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 522 (648)
.= .--+|.. .|+..+...+-+.|+++.|..+++... +-.|+ ++-|..-...+...|.+++|..++++.. .
T Consensus 361 ~~--~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 361 DG--KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cc--ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 00 0013443 334455566677777777777777775 44677 6667666777777777777777777665 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-------hhHH--HHHHHHHhcCCcHHHHHHH
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS-------GSYV--LMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~--~l~~~~~~~g~~~~a~~~~ 583 (648)
.||..+=..-..-..+..+.++|.++..+..+.+.+-. -.|. -=+.+|.+.|+|..|.+=+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 34443333444455566777777777766665442110 0122 2244566666666665544
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=1.5e-05 Score=80.24 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=105.0
Q ss_pred HHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 330 GYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
+-....++.+|+.+++.++.. +.-..-|..+...|+..| +++.+.++|-.. ..++--|++|.+.|+++
T Consensus 741 aai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~--dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKG--DFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccch--hHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455556666655555431 111223444555555555 556555555321 12344555666666666
Q ss_pred HHHHHHhhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 410 ESQRVFNETQEK--SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 410 ~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+|.++-.+...| ....|-+-..-+-.+|++.+|.++|-... .|+. .+..|-+.|..++.+++..+-
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~--- 876 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH--- 876 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh---
Confidence 666665555444 23345444555555666666655553321 2332 234455555555555554432
Q ss_pred cCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 488 YHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 488 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.|+ ..+...+..-|...|++.+|+.-|-+.. -|.+-++.|...+-++.|-++. ...+..+..-.+.
T Consensus 877 ---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayria---ktegg~n~~k~v~ 944 (1636)
T KOG3616|consen 877 ---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA---KTEGGANAEKHVA 944 (1636)
T ss_pred ---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH---hccccccHHHHHH
Confidence 222 3344445555556666666655444322 2444555555555554443332 2233444444444
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 006364 566 MSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~ 585 (648)
..++-.-.|+ .|.+++++
T Consensus 945 flwaksiggd--aavkllnk 962 (1636)
T KOG3616|consen 945 FLWAKSIGGD--AAVKLLNK 962 (1636)
T ss_pred HHHHHhhCcH--HHHHHHHh
Confidence 4444443343 45555553
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=4.4e-06 Score=85.16 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=84.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC 536 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 536 (648)
++..+...|.+.|++++|+++++..++. .|+ ++.|..-...|-+.|++++|.+.++... ..-|-.+=+.....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 3445556677788888888888877644 677 7778888888888888888888877765 223333444455667
Q ss_pred HHcCCHHHHHHHHHHHHhcCC--CC-------chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 537 RIHGNVEMGERIADALMKMEP--AG-------SGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+.|++++|++.+....+.+. .. .....-.+++|.+.|++..|.+.+..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 778888888888877765542 11 112345677788888888877766544
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=5.8e-05 Score=76.98 Aligned_cols=442 Identities=12% Similarity=0.024 Sum_probs=256.3
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC----
Q 006364 45 ALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---- 120 (648)
Q Consensus 45 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 120 (648)
+.++....++-|...|..+--++...|+++.+-+.|++....- ......|+.+-..|..+|.-..|..+++.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 4445555566788888888888888999999999999887543 34456788888899999999999999887643
Q ss_pred CC-cchHHHHHHHHHcCCCChHHHHHHHHHHHHC------CCCCChhhHHHHHHHhc----CCCC-------hhHHHHHH
Q 006364 121 KD-SVSWNAILSGYTQDGDYGVEAILALIEMMRK------GLRLDHVSFTSAASACG----HEKN-------LELGKQIH 182 (648)
Q Consensus 121 ~~-~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~----~~~~-------~~~a~~~~ 182 (648)
|+ ...+-..-..|.+.-+..+++++.-.+.... .+.|- .|..+--+|+ .... ..++.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 32 2223223334444332666777666655541 12222 2222222221 1111 12233333
Q ss_pred HHHHHhc-CCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHH
Q 006364 183 GVSIKMG-YGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGL 261 (648)
Q Consensus 183 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 261 (648)
+..++.+ -.|++..|-++ -|+.. ++.+.|++..++...-+-.-+...|..+
T Consensus 468 e~av~~d~~dp~~if~lal--q~A~~--------------------------R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLAL--QYAEQ--------------------------RQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHHhcCCCCchHHHHHHH--HHHHH--------------------------HhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3333322 12222222211 12222 5566677777777766556677788888
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHH
Q 006364 262 IHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAV 341 (648)
Q Consensus 262 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (648)
.-.++..+++..|+.+.+.....- ..|......-++.-...++.+++......+.. .|... .+....++-...+
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~ 593 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLL 593 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhh
Confidence 888888999999999887665421 11111111222333345677766655443321 01100 0111122222233
Q ss_pred HHHHHhHh--CCCC-CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 342 QAFFGVIK--ESKP-NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 342 ~~~~~m~~--~~~p-~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
++...+.- ..+. ...++..+..-..... ...| .+..+..+...
T Consensus 594 ~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--------------~~~~--------------------se~~Lp~s~~~ 639 (799)
T KOG4162|consen 594 RLKAGLHLALSQPTDAISTSRYLSSLVASQL--------------KSAG--------------------SELKLPSSTVL 639 (799)
T ss_pred hhhcccccCcccccccchhhHHHHHHHHhhh--------------hhcc--------------------cccccCccccc
Confidence 33333322 1111 1112211111111000 0000 00011111111
Q ss_pred CCCC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC
Q 006364 419 QEKS------EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 419 ~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 492 (648)
+.|+ ...|......+.+.++.++|...+.+.... ..-....|......+...|..++|.+.|.... -+.|
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP 715 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDP 715 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCC
Confidence 1121 235667777888888889998888887663 23334555555566778899999999998875 6789
Q ss_pred C-hHHHHHHHHHHhhcCCHHHHHH--HHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 493 S-PDHYSCMVDMLGRVGRLEEAEE--LVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 493 ~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
+ +....++..++.+.|+..-|.. ++..+. .+.+...|..++..+.+.|+.+.|...|.-+.++++.+|.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8 8899999999999998777766 777765 4567889999999999999999999999999999877653
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.1e-05 Score=80.80 Aligned_cols=258 Identities=9% Similarity=-0.010 Sum_probs=154.3
Q ss_pred HHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH---HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 330 GYAQNGLSLAAVQAFFGVIKESKPNAYTFGS---VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~---ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
.+...|++++|.+.+++.....+.+...+.. ........+ ....+...+.. .....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSG--MRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhccccc--CchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556677777777777776644444444332 111111223 33344443333 11111222334445667788899
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCcHHHHHHH
Q 006364 407 SIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGV-RPDS--ITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 407 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
++++|.+.++...+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999987664 3566778888889999999999999988876421 2332 2455677778889999999999
Q ss_pred HHHhHHhcCCCCChHHH-H--HHHHHHhhcCCHHHHHHH---Hhh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006364 481 FDSMLKDYHIEPSPDHY-S--CMVDMLGRVGRLEEAEEL---VGQ---I-PGGPGLSVLQSLLGACRIHGNVEMGERIAD 550 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (648)
++.........+..... + .+...+...|....+.++ ... . +.............++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99875331111222111 1 223333444433333222 111 1 111112222345667788899999999988
Q ss_pred HHHhcCC---------CCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 551 ALMKMEP---------AGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 551 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+....- .........+.++...|++++|.+.+......+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8765321 134566788888999999999999998776543
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=1.6e-06 Score=75.15 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=152.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 470 (648)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++... +.|+ ....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 345667788999999999999887754 455788889999999999999999999887 4554 4556666666788
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|.+++|.+.|+..... ..-|. ..+|..++-+..++|+++.|.+.+++.. .+..+.....+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88999999999998776 33333 7788888888899999999999988765 23345566777888888999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 548 IADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+++.....+.......+.+.+-...|+-+.+.+.-..+..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999888888888888888888889998888877666543
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=0.00012 Score=75.12 Aligned_cols=376 Identities=12% Similarity=0.098 Sum_probs=209.3
Q ss_pred ChhhHHHHHHH--hhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCC-----------C
Q 006364 56 DAVTYSTALSF--CLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK-----------D 122 (648)
Q Consensus 56 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~ 122 (648)
|..|--.++.. |...|+.+.|.+-.+.+.. ..+|..|.+++.+..+++-|.-.+..|.+. |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45555555543 5667888888777666543 356888888888888888887777777641 1
Q ss_pred cchHHHHHHH-HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHH
Q 006364 123 SVSWNAILSG-YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLM 201 (648)
Q Consensus 123 ~~~~~~li~~-~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 201 (648)
..--.+-..+ -...| ..++|..+|++-++ |-.|=+.|-..|.+++|.++-+.--+..+. .+|-...
T Consensus 799 ~~e~eakvAvLAieLg-MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELG-MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CcchhhHHHHHHHHHh-hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 1111111111 23445 66677777766554 233344455666777776665533222221 2233333
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 006364 202 STYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLC 281 (648)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 281 (648)
.-+-..++.+.|++.|++...+--... .|+..++.......+.+ .|...|...-.-+-..|+.+.|..+|...
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~-rmL~e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVF-RMLKEYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHH-HHHHhChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 334445667777777765543211111 11112222222222222 24455555555667788899998888876
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHH
Q 006364 282 IKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSV 361 (648)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 361 (648)
.+ |-+++...+-.|+.++|-++-++- .|......+.+.|-..|++.+|+..|.+.+ +|...
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--------afsnA 999 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ--------AFSNA 999 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------HHHHH
Confidence 65 456777777888888888877654 345556667788888888999988887764 34444
Q ss_pred HHHhccCc-------------hhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--------
Q 006364 362 LNAVGAAE-------------DISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------- 420 (648)
Q Consensus 362 l~a~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 420 (648)
|+.|-..+ ..+.-.+-.+|++ .|. -...-+..|-|.|.+.+|+++-=.-.+
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 44433222 1133333333332 221 122344568888888888876322221
Q ss_pred ------CChhHHHHHHHHHHhCCChHHHHHHHHHHHH----------CC----------------CCCCHH----HHHHH
Q 006364 421 ------KSEFAWTAIISALARHGDYESVMNQFKEMEN----------KG----------------VRPDSI----TFLSV 464 (648)
Q Consensus 421 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g----------------~~p~~~----t~~~l 464 (648)
.|+...+.-..-++.+.++++|..++-..++ .| -.|+.. ....+
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 2555555555556666666666665543321 11 113332 23445
Q ss_pred HHHhcccCcHHHHHHHHHHh
Q 006364 465 LTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m 484 (648)
...|.+.|.+..|-+-|.+.
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhccchHHHHHHHhhh
Confidence 56677777777777666655
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.1e-05 Score=78.63 Aligned_cols=213 Identities=12% Similarity=0.105 Sum_probs=133.0
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCCh----------hHHHHH
Q 006364 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSE----------FAWTAI 429 (648)
Q Consensus 360 ~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~l 429 (648)
.+.++..+.. ++..+.+-+....... .+..-++....+|...|.+......-+...+..- .....+
T Consensus 229 ~lgnaaykkk--~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 229 ELGNAAYKKK--DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444444444 5556666555555544 4455555666666666666655554443332211 122224
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG 508 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g 508 (648)
..+|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|. ..-...-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4466667788888888888766555554332 2233444444444332 34555 222222366677888
Q ss_pred CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 509 RLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 509 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
++..|+..+.++. .+.|...|..-.-++.+.|++..|..-.+..++++|+....|..-+.++....+|++|.+.+++-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887765 33456677777778888888888888888888888888888888888888888888888888655
Q ss_pred hh
Q 006364 587 KS 588 (648)
Q Consensus 587 ~~ 588 (648)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 43
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=1.6e-06 Score=82.19 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=136.0
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD-SDPIVGSALLDM 401 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 401 (648)
....+.+++...|+++.++ .++..+..|.......+...+.... +-+.+..-+......... .+..+......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~--~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPS--DKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTST--THHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 3344556677777665443 3333333555555544444444323 333333333222222222 333444444556
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCcHHHH
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG----RNGMIHKG 477 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a 477 (648)
|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..| .+...+..++. -...+.+|
T Consensus 112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhHHHH
Confidence 77788888888888765 4566667778888889999999999988876 3344 33344444432 22358888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 006364 478 RHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV-EMGERIADALMK 554 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 554 (648)
..+|+++.++ ..+++.+.+.+..++...|++++|.+++.+.. .+.++.++..++......|+. +.+.+...++..
T Consensus 187 ~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888654 34667778888888888888888888877654 223556666677776777766 667778888777
Q ss_pred cCCCCc
Q 006364 555 MEPAGS 560 (648)
Q Consensus 555 ~~p~~~ 560 (648)
..|.++
T Consensus 265 ~~p~h~ 270 (290)
T PF04733_consen 265 SNPNHP 270 (290)
T ss_dssp HTTTSH
T ss_pred hCCCCh
Confidence 777764
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=8.8e-05 Score=74.93 Aligned_cols=260 Identities=13% Similarity=0.129 Sum_probs=182.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHH
Q 006364 297 ITMYARFESMQDSEKVFDELSCREII--SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLK 374 (648)
Q Consensus 297 i~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~ 374 (648)
|.+-.....+.+|+.+++.+..+++. -|..+..-|...|+++.|.++|.+. ..++-.+..|.+.| .++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~--kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAG--KWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccc--cHH
Confidence 44556677888899999888876553 4677778899999999999998654 23566788889999 888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006364 375 HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGV 454 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 454 (648)
.+.++-.. -.|.......|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+.+.++-
T Consensus 809 da~kla~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~----- 876 (1636)
T KOG3616|consen 809 DAFKLAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH----- 876 (1636)
T ss_pred HHHHHHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----
Confidence 88776543 345566667777777778899999999999999888875 467889999999988887654
Q ss_pred CCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC----CCHHH
Q 006364 455 RPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG----PGLSV 528 (648)
Q Consensus 455 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 528 (648)
.|+ ..|...+..-+...|+...|...|-+.. -|..-+++|...+.|++|.++-+.-... .-...
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 333 3566777788888999999998887652 2566788888899999999887653311 11112
Q ss_pred HH------HHHHHHHHcCCHHHHHHH------HHHHHh---c--CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 529 LQ------SLLGACRIHGNVEMGERI------ADALMK---M--EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 529 ~~------~l~~~~~~~g~~~~a~~~------~~~~~~---~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|. +.+..+.++|-.+.|... |+.+.+ + ...-+..+..++--+...|++++|.+.+-+..+
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 21 122233445544444321 122221 1 123456788888889999999999877655443
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=2.1e-06 Score=80.21 Aligned_cols=179 Identities=10% Similarity=0.033 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SE---FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS----IT 460 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 460 (648)
....+..+...|.+.|++++|...|+++.. | +. .+|..+..++...|++++|+..|+++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344556666667777777777777776543 2 11 35566667777777777777777777663 2321 13
Q ss_pred HHHHHHHhccc--------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 006364 461 FLSVLTVCGRN--------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531 (648)
Q Consensus 461 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 531 (648)
+..+..++... |++++|.+.|+.+.+. .|+ ...+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33444444433 6677777777777644 444 2222222111 0000000 011124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+...+...|+++.|...++.+.+..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999987765 478999999999999999999999887654
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=5.9e-07 Score=75.86 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=92.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 444 NQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 444 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...+++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555554 44553 4455667778888888888888876 44665 7788888888888888888888888765
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 522 -GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 522 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
.+.++..|..+..++...|+.++|...+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888777776543
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00022 Score=71.45 Aligned_cols=400 Identities=13% Similarity=0.111 Sum_probs=235.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCC-----CchhhHHHhc---CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 006364 198 NVLMSTYSKCEVTGDANKVFRRMHDR-----NVISWTTMIS---MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGN 269 (648)
Q Consensus 198 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 269 (648)
..++..|- .+++...++..+.+..+ +....-.+.- |+.++|....+.-....+ -+.+.|..+--.+-...
T Consensus 12 ~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhh
Confidence 34444443 35555555555554432 2222211111 888888888776655322 23444544444455667
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 270 LVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFG 346 (648)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (648)
++++|...|....+.+ +.|..++..+.-.=++.|+++..........+ .....|..+..++...|+...|..+++.
T Consensus 90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877765 45566666666556666777766655554432 2447888888899999999999999999
Q ss_pred hHh--CCCCCHHHHHHHHHHhcc------CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 347 VIK--ESKPNAYTFGSVLNAVGA------AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 347 m~~--~~~p~~~~~~~ll~a~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
..+ .-.|+...+......+.+ .| ..+.+.+.+...... +......-..-.+.+.+.+++++|..++..+
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g--~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAG--SLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 888 346777777655544332 23 444444443332221 2222233345667788899999999999988
Q ss_pred CCC--ChhHHHH-HHHHHHhCCChHHHH-HHHHHHHHCC---CCCCHHH--------HHHHHHHhcc----cC-------
Q 006364 419 QEK--SEFAWTA-IISALARHGDYESVM-NQFKEMENKG---VRPDSIT--------FLSVLTVCGR----NG------- 472 (648)
Q Consensus 419 ~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t--------~~~ll~a~~~----~g------- 472 (648)
..+ |...|.- +..++.+-.+.-+++ .+|....+.- ..|-... +...+.-|.+ .|
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 764 4444444 444554344444444 6676666531 1111111 1111111110 00
Q ss_pred ------cHHH-------HHHHHHHhHHh--c------CC-CCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH
Q 006364 473 ------MIHK-------GRHLFDSMLKD--Y------HI-EPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLS 527 (648)
Q Consensus 473 ------~~~~-------a~~~~~~m~~~--~------~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 527 (648)
+..+ +..+...+... + .. .|+ ..++-.++..+-+.|+++.|...++... ..|+..
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli 405 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI 405 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence 1000 11111111100 0 01 344 4456667888889999999999998866 345543
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc-----cCCceeEEE
Q 006364 528 -VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR-----KEVGFSWAD 601 (648)
Q Consensus 528 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~s~~~ 601 (648)
.|-.-...+...|+++.|...++.+.+++..|...-..-++-..++.+.++|.++.......|.. .+..|.|..
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 44455567788899999999999999998777666656777788888999999988887666541 123466766
Q ss_pred Ec
Q 006364 602 VG 603 (648)
Q Consensus 602 ~~ 603 (648)
+.
T Consensus 486 ~E 487 (700)
T KOG1156|consen 486 LE 487 (700)
T ss_pred Hh
Confidence 55
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=1.1e-06 Score=83.39 Aligned_cols=242 Identities=11% Similarity=0.051 Sum_probs=156.0
Q ss_pred HHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 331 YAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
+.-.|++..++.-.. ... ....+.....-+.+++...| ..+. +...+.+.. .|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg--~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALG--QYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT---HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcC--ChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 344566666665554 222 11122333444555665555 4332 333333333 566665555555554445566
Q ss_pred HHHHHHhhcC-CC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 410 ESQRVFNETQ-EK----SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 410 ~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
.+..-+++.. ++ +....-.....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665433 32 2222222334566789999999988642 35566677888899999999999999999
Q ss_pred HHhcCCCCChH---HHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 485 LKDYHIEPSPD---HYSCMVDMLGRVGRLEEAEELVGQIPG--GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 485 ~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
. .+..|.. ...+.+..+.-.+.+++|.-+|+++.. .+++.+++.+..++...|++++|+++++.+++.+|.+
T Consensus 158 ~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 Q---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp H---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred H---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 6 3455522 223333333333579999999999764 4778888889999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCc-HHHHHHHHHHhh
Q 006364 560 SGSYVLMSNLYAEKGDW-EMVAILRKGMKS 588 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 588 (648)
+.+...++-+....|+. +.+.+++++++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998 668889988875
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=2.8e-06 Score=75.97 Aligned_cols=116 Identities=9% Similarity=0.101 Sum_probs=88.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH-HHcCC--HHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC-RIHGN--VEM 544 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~--~~~ 544 (648)
.++.+++...++...+. .|+ ...|..+...|...|++++|...+++.. .+.+..++..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 56667777777766543 565 7788888888888888888888887754 334666777777764 56666 488
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
|.++++++++.+|+++.++..++..+...|++++|...++++.+.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888887653
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=0.00014 Score=74.49 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=33.0
Q ss_pred CcchHHHHHH--HHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHH
Q 006364 122 DSVSWNAILS--GYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSI 186 (648)
Q Consensus 122 ~~~~~~~li~--~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 186 (648)
|..|-..++. -|..-| +.+.|++-.+-++ +...|..+.+.|.+..+++-|+-.+..|.
T Consensus 725 d~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEec-cHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 4444444442 344556 6666665555444 23456666666666666666666665554
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=3e-08 Score=59.23 Aligned_cols=33 Identities=42% Similarity=0.599 Sum_probs=25.7
Q ss_pred CCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 87 GLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 87 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677778888888888888888888888877774
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.2e-06 Score=86.09 Aligned_cols=213 Identities=8% Similarity=-0.011 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
++..|.-.|+..++.. +-+...|--|...-+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+..++.
T Consensus 300 ~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~ 378 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK 378 (579)
T ss_pred CchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3444444444443332 22333444444444555555556666655443 2556666777788888888888888887
Q ss_pred HHHCCCC-----C---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 449 MENKGVR-----P---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 449 m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
-+....+ + +..+=.. ..+.+........++|-.+....+..+|.+.+.+|.-+|--.|.+++|.+.|+.+
T Consensus 379 Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 379 WIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAA 456 (579)
T ss_pred HHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHH
Confidence 7653211 0 1000000 2333444556667777777766676688889999999999999999999999987
Q ss_pred C-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 521 P-GG-PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 521 ~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
. .+ .|...||.|+..+....+.++|+.+|.+++++.|.-..+...|+-.|...|.+.+|.+.+-...
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6 34 5678999999999999999999999999999999999999999999999999999999886543
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00025 Score=70.30 Aligned_cols=405 Identities=13% Similarity=0.053 Sum_probs=214.9
Q ss_pred HHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHH--HHHH--Hh
Q 006364 131 SGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVL--MSTY--SK 206 (648)
Q Consensus 131 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~ 206 (648)
.-+...| ++++|.+....++..+ +-|...+..=+-+..+.+.++.|..+.+.- +. ..+++.. =.+| .+
T Consensus 20 n~~~~~~-e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNG-EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHhccch-HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch---hhhcchhhHHHHHHHHH
Confidence 3444556 6777777777776644 223344555555566666666666433321 10 0111111 2222 23
Q ss_pred CCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 006364 207 CEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPND-VTFIGLIHAISIGNLVKEGRMIHGLCIKTN 285 (648)
Q Consensus 207 ~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 285 (648)
.++.|+|...++ |..++. .+...-...|.+.++++++..+|..+.+.+
T Consensus 92 lnk~Dealk~~~-------------------------------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 92 LNKLDEALKTLK-------------------------------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cccHHHHHHHHh-------------------------------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444555444443 223322 244444556778888888888888887766
Q ss_pred CCCC-chhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHH---HHHHhcCCcHHHHHHHHHhHh--------CCCC
Q 006364 286 FLSE-PSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALI---SGYAQNGLSLAAVQAFFGVIK--------ESKP 353 (648)
Q Consensus 286 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~p 353 (648)
.+.. ...-..++.. +..-.+. +.+..+.....+|..+. ..++..|++.+|++++....+ +..-
T Consensus 141 ~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~ 215 (652)
T KOG2376|consen 141 SDDQDEERRANLLAV----AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN 215 (652)
T ss_pred CchHHHHHHHHHHHH----HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4321 1111112111 1111121 34444444344554443 356678999999999988732 1111
Q ss_pred --CHHH-----HHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHhhcCCHH-HHHHHHhhcCCC-
Q 006364 354 --NAYT-----FGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSD---PIVGSALLDMYGKRGSIF-ESQRVFNETQEK- 421 (648)
Q Consensus 354 --~~~~-----~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~- 421 (648)
+... -..+.-.+-..| +.+++..++..+++....-. ....|.|+.+-.-..-++ .++..++.....
T Consensus 216 eEeie~el~~IrvQlayVlQ~~G--qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQG--QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 1111 112233344567 88999999999988765322 223344443322111111 233333322211
Q ss_pred -------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc--ccCcHHHHHHHHHHhHH
Q 006364 422 -------------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG--RNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 422 -------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 486 (648)
..+..|..+-.+. .+..+.+.++..... +..|. ..+..++..+. +...+.++.+++....+
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~-tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALF-TNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 1122222222222 223344443333221 22333 44555555553 22357788888887754
Q ss_pred hcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHh--------hCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 487 DYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVG--------QIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 487 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
. .|. ..+--.++......|+++.|.+++. .++ ..-.+.+..++...+.+.++...|..++..++.-
T Consensus 370 ~---~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 370 G---HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred c---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 4 454 5566777888999999999999988 333 2334455666777777878777788877777642
Q ss_pred ----CC---CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 556 ----EP---AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 556 ----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+ .-...+..++..-.+.|+-++|..+++++.+
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 12 2233455666666778999999999998876
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=9.5e-05 Score=77.49 Aligned_cols=466 Identities=14% Similarity=0.059 Sum_probs=247.0
Q ss_pred HHHHHHHhCCCCC-cchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCC
Q 006364 79 LHSLIVKFGLDSE-VYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKG 154 (648)
Q Consensus 79 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g 154 (648)
++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .|..++......|++.. .++.|..+.-..-+..
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES-TWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhhc
Confidence 3333333333343 35677888888888888899999987765 46778889999999999 9999998843322211
Q ss_pred -CCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHH--
Q 006364 155 -LRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTM-- 231 (648)
Q Consensus 155 -~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-- 231 (648)
...-...|...--.+...++...+..-+....+.. +-|...|..|..+|..+|++..|.++|.+...-++.+|-.-
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHH
Confidence 00011112222223556677777777777766654 45778899999999999999999999988776444433221
Q ss_pred ---hc---CChhhHHHHHHHHHHCC------CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 232 ---IS---MNREDAVSLFKEMRLDG------VCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITM 299 (648)
Q Consensus 232 ---i~---g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 299 (648)
+. |.+.+|+..+......- ..--..++..+...+...|-...+..+++.-++. ..++++..
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~-------f~~~l~h~ 708 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES-------FIVSLIHS 708 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHh
Confidence 11 77777777766654320 0001111111222222222222222222222211 00111111
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchh-hHHH-HH
Q 006364 300 YARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDI-SLKH-GQ 377 (648)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~-~~~~-a~ 377 (648)
. ..+...|-.+- .|...|...... .|+......+..-.-..+.. ..+- ..
T Consensus 709 ~-----------------~~~~~~Wi~as----------dac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~L 760 (1238)
T KOG1127|consen 709 L-----------------QSDRLQWIVAS----------DACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFL 760 (1238)
T ss_pred h-----------------hhhHHHHHHHh----------HHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHH
Confidence 0 00111111111 111111111100 12221111111111111100 0000 00
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhh----cC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChHHHHHHH
Q 006364 378 RCHSHIIKVGLDSDPIVGSALLDMYGK----RG----SIFESQRVFNETQ---EKSEFAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
..-.......+..++..|..|+.-|.+ +| +...|...+.... ..+..+||.|.-. ...|.+.-|...|
T Consensus 761 g~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCf 839 (1238)
T KOG1127|consen 761 GYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCF 839 (1238)
T ss_pred HHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhh
Confidence 000000111112223344334333333 11 2234555555433 3567778877665 5556777777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC-----
Q 006364 447 KEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQI----- 520 (648)
Q Consensus 447 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 520 (648)
-+-... .+-+..+|..+...|....+++.|...|.... .+.|+ ...|--........|+.-++..+|..-
T Consensus 840 Iks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 840 IKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 665543 23445677777777888888888888888775 56775 666766666666778777777777651
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 521 P--GGPGLSVLQSLLGACRIHGNVEMG----------ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 521 ~--~~~~~~~~~~l~~~~~~~g~~~~a----------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
. .-|+...|.+........|+.+.- --+.++.....|+...+|...+......+.+.+|.+...+.
T Consensus 916 ~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 916 KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 225555555544444455554433 33455555667888888888888888777777776665543
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.001 Score=75.81 Aligned_cols=86 Identities=6% Similarity=-0.136 Sum_probs=38.5
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCC------CC--chhHHHHHHHHHhcCChHHHHHHHhhcCC----CCc----ccHHHH
Q 006364 264 AISIGNLVKEGRMIHGLCIKTNFL------SE--PSVCNCLITMYARFESMQDSEKVFDELSC----REI----ISWNAL 327 (648)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~l 327 (648)
.+...|+++++...+......--. +. ......+...+...|+++.|...+++... .+. ..++.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 344556666666666655432100 00 01111222334455666666655554321 111 122333
Q ss_pred HHHHHhcCCcHHHHHHHHHhHh
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~ 349 (648)
...+...|++++|...+.+...
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555666666666555543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=8.7e-06 Score=73.12 Aligned_cols=293 Identities=12% Similarity=0.144 Sum_probs=172.2
Q ss_pred CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc--ccHHH-
Q 006364 250 GVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI--ISWNA- 326 (648)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~- 326 (648)
|+....--+.+++..+.+..+++.+.+++....+.. +.+....+.|..+|....++..|-..++++...-+ .-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444456667777777777777777776655543 22445566677777777777777777777653222 22221
Q ss_pred HHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC
Q 006364 327 LISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG 406 (648)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (648)
-...+-+.+.+.+|+.+...|... |+...-..-+.+..+ ...+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIk-----------------------------------Yse~ 126 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIK-----------------------------------YSEG 126 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHh-----------------------------------cccc
Confidence 123445566677777776666431 111111111111111 1234
Q ss_pred CHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 407 SIFESQRVFNETQ-EKSEFAWTAIISALARHGDYESVMNQFKEMEN-KGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 407 ~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+ .|..| ...|+..+. ..+.|+++.|+++..++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEI 204 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHH
Confidence 4555555555555 24444444555555566666666666666555 34443 344544443 33445666666666665
Q ss_pred HHhcCCC-------------CC--------hHH-------HHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHH
Q 006364 485 LKDYHIE-------------PS--------PDH-------YSCMVDMLGRVGRLEEAEELVGQIP----GGPGLSVLQSL 532 (648)
Q Consensus 485 ~~~~~~~-------------p~--------~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l 532 (648)
+++ |++ || .-+ +|.-...+.+.|+++.|.+.+-.|| ...|+.+...+
T Consensus 205 ieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 205 IER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 543 321 11 122 3333344568899999999999998 33677776554
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
.-. -..++...+.+-+..+++++|-.+.++..+.-+|++..-++-|..++-
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 322 234556667777788889999999999999999999999999998874
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=0.00013 Score=71.58 Aligned_cols=235 Identities=10% Similarity=0.059 Sum_probs=143.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC------chhHHHHHH
Q 006364 326 ALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS------DPIVGSALL 399 (648)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li 399 (648)
.+....-+..++..|++.+.....-. .+..-++..-.++...+ ....+...-...++.|-.. =......+.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~--~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG--KYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc--HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555555411 22223333333344444 3333333333332222110 011122244
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHH
Q 006364 400 DMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 478 (648)
.+|.+.++++.|...|.+...+... -....+....++++...+...- +.|... -.-.-...+.+.|++..|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence 5777888899999988875432111 1122333445666665555544 344431 1222255677889999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 479 HLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
..|.++++. .|+ ...|....-+|.+.|.+.+|++-.+... .++....|..-+.++....+++.|.+.|.+.++.
T Consensus 379 ~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 379 KHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999866 576 8899999999999999999988766544 3344555666666777788999999999999999
Q ss_pred CCCCchhHHHHHHHHHhc
Q 006364 556 EPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 556 ~p~~~~~~~~l~~~~~~~ 573 (648)
+|.+...-..+.+++...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999988888888887753
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=0.00016 Score=75.94 Aligned_cols=519 Identities=11% Similarity=0.004 Sum_probs=247.5
Q ss_pred hHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCC---cchHHHH--HHHH
Q 006364 59 TYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKD---SVSWNAI--LSGY 133 (648)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l--i~~~ 133 (648)
.|..|-..|+...+...|.+.|+...+.. ..+...+....+.|++..+++.|..+.-...+.+ ...||-. --.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 55666666666667778888888877664 4566778889999999999999988854433321 1122222 2234
Q ss_pred HcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhCCChHH
Q 006364 134 TQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHV-SVGNVLMSTYSKCEVTGD 212 (648)
Q Consensus 134 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 212 (648)
.+.+ +..+|+.-|+...+..+ -|...|..+..+|.+.|.+..|.++|...... .|+. ..---...+-+..|++.+
T Consensus 573 Lea~-n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAH-NLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCcc-chhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 4455 66777777777766432 25567777888888888888888887665443 2322 111112223445566777
Q ss_pred HHHHHhcCCCC---------Cc-hhhHH-----HhcCC-------hhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCc
Q 006364 213 ANKVFRRMHDR---------NV-ISWTT-----MISMN-------REDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNL 270 (648)
Q Consensus 213 A~~~~~~~~~~---------~~-~~~~~-----li~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 270 (648)
|...+..+... +. .++-. .+.|- ++++++.|.-.......-+...|..+-.+|...-.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 66666554320 00 00000 00022 22222222222222211222222222222110000
Q ss_pred hH------HHHHH-HHHHHHhcC--------------------CCCchhHHHHHHHHHh----cC----ChHHHHHHHhh
Q 006364 271 VK------EGRMI-HGLCIKTNF--------------------LSEPSVCNCLITMYAR----FE----SMQDSEKVFDE 315 (648)
Q Consensus 271 ~~------~a~~~-~~~~~~~~~--------------------~~~~~~~~~li~~~~~----~g----~~~~a~~~~~~ 315 (648)
.+ ....+ +.+....+. ..+...|..|+..|.+ +| +...|...+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 00000 001111111 1112222222222222 11 11233444433
Q ss_pred cC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCch
Q 006364 316 LS---CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDP 392 (648)
Q Consensus 316 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 392 (648)
-. ..+..+||.|.-. ...|.+.-|...|-+-....+....+|..+--.|.... +.+.+...+.......+ .+.
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~--d~E~A~~af~~~qSLdP-~nl 884 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ--DFEHAEPAFSSVQSLDP-LNL 884 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc--cHHHhhHHHHhhhhcCc-hhh
Confidence 22 2344555555433 33344444444443333333445555555555555555 66666666665554321 122
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhc-----CC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHH---------CCCC
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNET-----QE---KSEFAWTAIISALARHGDYESVMNQFKEMEN---------KGVR 455 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~ 455 (648)
..|--........|+.-++..+|..- .+ ++..-|-+...-..++|+.++-+..-+..-. .|.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 22222222223345555555555431 11 2333333333344455555444433333221 1233
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYS----CMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 531 (648)
-+...|........+.+.+..|.+...+.+.-...+-+...|+ .....++..|.++.|..-+...+...+..+..+
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt 1044 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGT 1044 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhh
Confidence 3345666666666666666666666555432212223333444 334455566777777666665554444444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGS---YVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
-+.. .-.++++.+...|++++.+...+... ...++......+.-+.|...+-+..
T Consensus 1045 ~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1045 DLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 3333 44678888888888888776544443 3334444455566666666554443
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=9.9e-08 Score=57.00 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 489 HIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 489 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666663
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=5.6e-06 Score=87.80 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=115.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
++..+-.|.....+.|.+++|..+++...+ +.||. ..+..+..++.+.+.+++|...+++... ..|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777777788888888888888888877 56764 4556677777888888888888887763 4776 777777
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+..++.+.|++++|..+|++.. ..| +..+|..+..++...|+.+.|..+|+++++...+....|..+. ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 7888888888888888888765 233 3667778888888888888888888888877655544443322 2222
Q ss_pred HHHHHHHHHhhCCCccCCceeEEEE
Q 006364 578 MVAILRKGMKSKGVRKEVGFSWADV 602 (648)
Q Consensus 578 ~a~~~~~~m~~~~~~~~~~~s~~~~ 602 (648)
.-..+++++.-.+.......+.+-+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVL 258 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeH
Confidence 3344555554444444444444433
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.0011 Score=65.08 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=105.2
Q ss_pred cHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCHHHHHHH
Q 006364 337 SLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS-DPIVGSALLDMYGKRGSIFESQRV 414 (648)
Q Consensus 337 ~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 414 (648)
.+...+.+++... ...--..+|...++...+.. .++.|+.+|....+.+..+ ++.+.++++..||. ++..-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e--GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE--GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh--hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 4455555666555 22222345566666666666 6777777777777766666 66777777777664 566777777
Q ss_pred HhhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 415 FNETQE--KS-EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 415 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
|+.-.+ +| ..--...+.-+...++-..|..+|++....++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 775443 23 333345566666667777777777777776566553 5677777666777777777777666655544
Q ss_pred --CCCChHHHHHHHHHHhhcCC
Q 006364 490 --IEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 490 --~~p~~~~~~~l~~~~~~~g~ 509 (648)
..|...+-..+++-|.-.+.
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred hhhcCCCChHHHHHHHHhhccc
Confidence 44443444445555554444
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=1.4e-06 Score=73.57 Aligned_cols=105 Identities=7% Similarity=-0.028 Sum_probs=90.7
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
.+++... .+.|+. +..+...+...|++++|...|+... .+.+...|..+..+|...|+++.|...++++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455554 345653 5567888999999999999999865 45678899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|.++..+..++.++...|++++|...+++..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987764
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.5e-05 Score=71.29 Aligned_cols=157 Identities=8% Similarity=0.105 Sum_probs=121.0
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 398 LLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
-+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++..+. -+.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888888766654433221 0122356778888888887774 245678888999999999999999
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHHHHHHH-hhcCC--HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 478 RHLFDSMLKDYHIEPS-PDHYSCMVDML-GRVGR--LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
...|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++.. .+.+..++..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999987 45786 88888888864 67777 599999999876 334677888899999999999999999999
Q ss_pred HHhcCCCCchhHHHH
Q 006364 552 LMKMEPAGSGSYVLM 566 (648)
Q Consensus 552 ~~~~~p~~~~~~~~l 566 (648)
++++.|++..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998877665444
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=1.3e-05 Score=86.42 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=169.0
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQEK--------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
+.+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445567777888888899999999999876642 3458999999888889888999999999873 333467
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP---GLSVLQSLLGAC 536 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 536 (648)
|..|+..|.+.+..++|.++++.|.++++ -....|...++.+.+..+-+.|..++.++. .-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 457789999999999999999999988754 223 355566677777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
.++|+.+.+..+|+.++.-.|.....|..+++.-.+.|+.+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999998877654
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=8.2e-06 Score=82.42 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=99.8
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
++|--..-..+.+.+.+.|-...|..+|+... .|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34444455556666666666677766666543 456666666666666666666666555 35666666666666
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh-CC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQ-IP-GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
.....-+++|+++.+....+ .-..+.....+.++++++.+.++. +. .+-...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 65555566666665544221 111112222234555555555443 22 122344455555555555555555
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.++|-+...++|++...|..++-+|.+.|+..+|...+++..+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 55555555555555555555555555555555555555544433
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.46 E-value=0.00035 Score=69.95 Aligned_cols=265 Identities=14% Similarity=0.085 Sum_probs=165.9
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHH-HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHH--
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGS-VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGS-- 396 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~-ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 396 (648)
..|..+...+...|+.+++...+....+ ...++...... ....+...+ +.+.+..++....+.. +.+...+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG--DLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3455555666667777777777766655 22233322222 122344566 8999999999988764 33333433
Q ss_pred -HHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 397 -ALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 397 -~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
.........|....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222223356666777776653322 23344556678899999999999999999852 334566778888899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC--C-HHHH-H--HHHHHHHHcCCHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP--G-LSVL-Q--SLLGACRIHGNVE 543 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~-~~~~-~--~l~~~~~~~g~~~ 543 (648)
++++|..+++...+.....|+ ...|..+...+...|++++|..++++.. ..| . .... + .++.-....|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998754222334 2456678899999999999999999864 222 1 1111 1 2333444555544
Q ss_pred HHHHH---HHHHHhcCCCC--chhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 544 MGERI---ADALMKMEPAG--SGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 544 ~a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+.+. ........|.. ...-...+.++...|++++|.+.++.++...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44433 22211111221 2223367777888999999999999887644
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.45 E-value=0.00016 Score=66.58 Aligned_cols=184 Identities=8% Similarity=0.059 Sum_probs=127.8
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
.+.-.|+...|+.....+.+ -|+..|..-..+|...|++..|+.=++..-+.. .-+..++.-+-.-+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 34456788888888776664 377778888888999999988887776665531 22344555555566777888888
Q ss_pred HHHHHHhHHhcCCCCC-hHHHHH---H---------HHHHhhcCCHHHHHHHHhh-CCCCCCH-----HHHHHHHHHHHH
Q 006364 478 RHLFDSMLKDYHIEPS-PDHYSC---M---------VDMLGRVGRLEEAEELVGQ-IPGGPGL-----SVLQSLLGACRI 538 (648)
Q Consensus 478 ~~~~~~m~~~~~~~p~-~~~~~~---l---------~~~~~~~g~~~~A~~~~~~-~~~~~~~-----~~~~~l~~~~~~ 538 (648)
+...++.. .+.|| ...|.. | +....+.++|-++++-.+. |...|.. ..+..+-.+++.
T Consensus 243 L~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 243 LKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 88777775 56777 222221 1 1123345666666665554 3344542 223344455667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
-|++.+|.+.-.+.++++|+|..++..-+.+|.-...+++|+.=++...+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999988877654
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=4.1e-06 Score=69.26 Aligned_cols=100 Identities=8% Similarity=-0.035 Sum_probs=87.0
Q ss_pred CCC-CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 489 HIE-PS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 489 ~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
++. ++ ....-.+...+...|++++|.++|+... .+-+..-|-.|...|...|+++.|..+|.++..++|++|.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 44 5555666777889999999999999765 4567788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 565 LMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++.+|...|+.+.|.+.|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999986653
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00015 Score=70.37 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=104.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL-SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
+--....+...|++++|+..++.+... .||...|. .....+...++.++|.+.++.+... .|+ ....-.+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333344455678888888888888774 45554444 4455678888888888888888744 777 6666677888
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
|.+.|+..+|...++... .+.|+..|..|..+|...|+..++..+. +..|+..|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 888888888888888765 4467778888888888888887766663 446777888888888
Q ss_pred HHHHHhhCC
Q 006364 582 LRKGMKSKG 590 (648)
Q Consensus 582 ~~~~m~~~~ 590 (648)
.....+++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 887776543
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=2.6e-05 Score=72.82 Aligned_cols=183 Identities=12% Similarity=0.008 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Chh--
Q 006364 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS--DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEF-- 424 (648)
Q Consensus 352 ~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-- 424 (648)
......+......+...+ +.+.|...+..+.+..... ....+..+...|.+.|++++|...++.+.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSG--DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 445667777888888999 9999999999988765321 124667788999999999999999998864 2 222
Q ss_pred -HHHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCCh
Q 006364 425 -AWTAIISALARH--------GDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSP 494 (648)
Q Consensus 425 -~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 494 (648)
++..+..++.+. |+.++|++.|+++... .|+.. .+..+... . .. .... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~------~~~~---------~ 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YL------RNRL---------A 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HH------HHHH---------H
Confidence 455666666654 7889999999999874 45542 22211111 0 00 0000 0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP----GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
.....+...+.+.|++++|...++... ..| ....|..++.++...|+.++|...++.+....|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 112356677888999999998887754 122 356788889999999999999998888876655
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=5.7e-06 Score=69.57 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=77.7
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
...|+ ......+...+...|++++|.+.++... .+.+...|..+...+...|+++.|...++++.+.+|.++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34564 5556677777788888888888887754 33466777778888888888888888888888888888888888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|...+++..+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888876654
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00011 Score=74.70 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=172.2
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh
Q 006364 286 FLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV 365 (648)
Q Consensus 286 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~ 365 (648)
++|--..-..+...+.+.|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||+..|..+....
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 4555555667888999999999999999987 4788899999999999999998887776 788999999998888
Q ss_pred ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHH
Q 006364 366 GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESV 442 (648)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 442 (648)
.... -.+.|.++.+..... .-..+.....+.+++.++.+.|+.-.+- -..+|-....+..+.++++.|
T Consensus 468 ~d~s--~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPS--LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChH--HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7776 788888887665432 1122222233478999999999865443 456888888999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 443 MNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 443 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
.+.|..-.. ..||. ..|+.+-.+|.+.|+-.+|...+.+..+- + .-+...|...+....+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999887 56774 78999999999999999999999998754 4 3335566667777889999999999988764
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=3.1e-05 Score=76.38 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHH
Q 006364 300 YARFESMQDSEKVFDELSCRE---IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHG 376 (648)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a 376 (648)
+.+.|++.+|.-.|+.....| ...|--|......+++-..|+..+++..+-.+-|...+-.|.-.|...+ .-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg--~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG--LQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--hHHHH
Confidence 455666777766666654433 3566666666777776666666666666544445555555555555555 44444
Q ss_pred HHHHHHHH
Q 006364 377 QRCHSHII 384 (648)
Q Consensus 377 ~~~~~~~~ 384 (648)
...++.-+
T Consensus 373 l~~L~~Wi 380 (579)
T KOG1125|consen 373 LKMLDKWI 380 (579)
T ss_pred HHHHHHHH
Confidence 44444433
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.0044 Score=70.74 Aligned_cols=82 Identities=7% Similarity=-0.193 Sum_probs=35.5
Q ss_pred CChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHhcC
Q 006364 234 MNREDAVSLFKEMRLDGVCPND----VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLS-----EPSVCNCLITMYARFE 304 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g 304 (648)
|++++|...+++....--..+. ...+.+...+...|+++.|...+.......-.. ...++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 5555555555554432101111 122233334455666666666665554321110 0112233344455555
Q ss_pred ChHHHHHHHhh
Q 006364 305 SMQDSEKVFDE 315 (648)
Q Consensus 305 ~~~~a~~~~~~ 315 (648)
+++.|...+++
T Consensus 546 ~~~~A~~~~~~ 556 (903)
T PRK04841 546 FLQAAYETQEK 556 (903)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=8.4e-05 Score=66.24 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=75.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG 508 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 508 (648)
+-..+...|+-+....+....... .+-|..............|++..|...+++... .-.||...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444455555544444443221 112222333344555555555555555555532 11223555555555555555
Q ss_pred CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 509 RLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 509 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
++++|..-|.+.. ...++.+.+.+...+.-.||.+.|+.++.......+.+..+-..|+.+....|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555554432 22334445555555555555555555555555555555555555555555555555555543
No 122
>PLN02789 farnesyltranstransferase
Probab=98.29 E-value=0.00029 Score=67.88 Aligned_cols=181 Identities=9% Similarity=0.015 Sum_probs=119.9
Q ss_pred HhhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 006364 402 YGKRG-SIFESQRVFNETQE---KSEFAWTAIISALARHGDY--ESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 402 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 475 (648)
+.+.| ++++++..++.+.+ ++..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|..-..++.+.|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33444 45677777666553 2444566555555555542 66788888887642 234677777777777888888
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc---CCH----HHHHHHHhhCC--CCCCHHHHHHHHHHHHHc----CC
Q 006364 476 KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV---GRL----EEAEELVGQIP--GGPGLSVLQSLLGACRIH----GN 541 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----g~ 541 (648)
++++.++++++. .|+ ...|+....++.+. |.. +++.++..++. .+-+...|+-+.+.+... ++
T Consensus 160 eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 160 DELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 888888888755 443 55666555555443 222 45666664433 345677888888888773 44
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------------CcHHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKG------------------DWEMVAILRKGM 586 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 586 (648)
..++......+.+.+|.++.+...|+.+|.... ..++|.++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 566888888888888999999999999998643 236677777777
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00021 Score=77.61 Aligned_cols=159 Identities=12% Similarity=0.148 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCCC-C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQEK-S-EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 471 (648)
+|.+++++-..-|.-+...++|++..+- | ...|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc
Confidence 3444444444444444455555544432 2 234555555555555555555555555553 333344555555555555
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPS---PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
.+-+.|..++.++.+. -|. .....-.+.+-.+.|+.+.+..+|+... .+.....|+..+..-.++|+.+.++
T Consensus 1578 ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHH
Confidence 5555555555555432 232 3333444444555555555555555443 2224445666666666666666666
Q ss_pred HHHHHHHhcC
Q 006364 547 RIADALMKME 556 (648)
Q Consensus 547 ~~~~~~~~~~ 556 (648)
.+|+++..+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 6666655543
No 124
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.00014 Score=70.10 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=137.5
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc--H
Q 006364 401 MYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHG-DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM--I 474 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~ 474 (648)
.+.+.++.++|+...+.+.+. +..+|+.....+...| ++++++..++++.+... -+..+|+.-...+.+.|. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 344567888899888877653 4557777777777777 57999999999998532 234556655444555555 3
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc---CCH----HH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH---GNV----EM 544 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~----~~ 544 (648)
+++..+++.+.+ +.|. ..+|+....++.+.|++++|++.++++. ..-+..+|+.....+... |.. +.
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 678889988874 4776 8889999999999999999999999986 345777888877666554 222 46
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhc----CCcHHHHHHHHHHhh
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEK----GDWEMVAILRKGMKS 588 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 588 (648)
+.....++++.+|.|.++|..+..++... ++..+|.+...+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 77778899999999999999999999883 445668777766544
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=6.5e-05 Score=66.95 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHH
Q 006364 454 VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQ 530 (648)
Q Consensus 454 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 530 (648)
..|+......+-.++.-.|+-+.+..+....... .| +......++....+.|++.+|...+++.. .++|...|+
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 4454332256667777788888888887765322 23 35566668999999999999999999875 668999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+.-+|-+.|+.+.|...|.+++++.|.++.++..|+-.|.-.|+.+.|..++......+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998776544
No 126
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.1e-05 Score=69.69 Aligned_cols=198 Identities=10% Similarity=0.056 Sum_probs=155.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLS-VLTVCGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~ 470 (648)
+++.+.-+.+..++.+|++++..-.++ +....+.+..+|....++..|-..|+++-. ..|...-|.. -..++-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 445555556777899999998766553 556778888999999999999999999877 4566555432 3455667
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSC--MVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
.+.+.+|+++...|.. .|+...-.. -....-..+++..+..+++..+.+.+..+.+.......+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 8889999999988842 344222111 1223446788999999999999777788877777777899999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 549 ADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 549 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
|+.+.+...-+|..-..++-++.+.|+++.|.+...++.++|++..|...
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 99999998888888888999999999999999999999999999988554
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.0002 Score=76.24 Aligned_cols=141 Identities=15% Similarity=0.134 Sum_probs=106.8
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLS 463 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 463 (648)
...++..+..|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 445677778888888888999999998887764 4 556777888888888999999998888887 456654 4455
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLL 533 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 533 (648)
+..++.+.|++++|..+|++.... .|+ ...+..+..++...|+.++|...|++.. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 566678888999999999888753 555 7788888888888899999988888765 335555444443
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.8e-06 Score=52.59 Aligned_cols=35 Identities=31% Similarity=0.682 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00042 Score=61.39 Aligned_cols=166 Identities=13% Similarity=0.171 Sum_probs=118.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEKSEFAWTAI---ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
..++-+..-+|+.+.|..+++.+...-+.++... ..-+-..|++++|+++|+...+.. +.|.+++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3344455566788888888877654322222211 123445788999999999998864 556677776666666677
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcC---CHHHHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHG---NVEMGER 547 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g---~~~~a~~ 547 (648)
.--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+...| |.+.+.+
T Consensus 135 K~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777888888877765 45678899999999999999999999999865 344 5556666766655544 7888999
Q ss_pred HHHHHHhcCCCCchhHH
Q 006364 548 IADALMKMEPAGSGSYV 564 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~ 564 (648)
.|++++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999996655443
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=2.7e-05 Score=76.37 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH 539 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 539 (648)
..|+..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++++.. .+-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666677788888888877654 3553 3346667767777778887777654 223566666667778899
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++++.|..+++++.+..|.+..+|..|+.+|...|+|++|.-.++-+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998764
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=4.8e-05 Score=74.62 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.... .+-|...+..-...|...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 445567777778899999999999999888888888999999999999999999999864 3335555555666688999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 473 MIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
+++.|+.+.+++. ...|+ ..+|..|+.+|.+.|++++|+-.++.+|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999997 45887 7899999999999999999999999988
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00045 Score=74.40 Aligned_cols=231 Identities=8% Similarity=0.020 Sum_probs=132.5
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
...+..|+..|...+++++|.++.+...+. .+..|-.+...+.+.++.+++..+ .+.. ...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------~~~ 94 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------SFS 94 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------hcc
Confidence 344555666666666666666666544321 223333333355555555544443 2222 111
Q ss_pred cCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 006364 367 AAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 443 (648)
... ++.....++..+... ..+...+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+...|+.. +.++|.
T Consensus 95 ~~~--~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNL--KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccc--chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 111 222223333333332 23344566677777788888888888777664 3666777777777777 778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC
Q 006364 444 NQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG 522 (648)
Q Consensus 444 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 522 (648)
+++.+.... +...+++..+.++|.+++.. .|+ ...+..+....... ...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhh------------hcc
Confidence 777776653 44455677777777777633 444 33322222221111 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
.--..++..+-..|...++++.+..+++.+++.+|.|..+..-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2223455556666777788888888888888888888888887877776
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.6e-06 Score=51.26 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=31.3
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCCh
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDH 159 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 159 (648)
.+||++|.+|++.| ++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~-~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAG-RVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999 999999999999999999873
No 134
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.13 E-value=0.0072 Score=56.12 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=132.7
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChHH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET---QEKSEFAWTAIISALARHGDYES 441 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 441 (648)
+...| +...+......+.+.. +.|...+..-..+|...|.+..|+.=+... ...+..+.--+-..+...|+.+.
T Consensus 165 ~~~~G--D~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 165 ASGSG--DCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HhcCC--chhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 34445 6666666666666543 567777777788888888888887665543 34566666677777788888888
Q ss_pred HHHHHHHHHHCCCCCCHH-HH---HHH---------HHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHH
Q 006364 442 VMNQFKEMENKGVRPDSI-TF---LSV---------LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDM 503 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~~-t~---~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~ 503 (648)
++...++..+ +.||.. +| ..| .......+++.++++-.+...+. .|. ...+..+-.+
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 8888887776 567752 11 111 11234556777777777777644 444 3345556677
Q ss_pred HhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 504 LGRVGRLEEAEELVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
+...|++-+|++...+.. ..|+ +.++.--..+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 778889999998877755 3444 777777778888888999999999999999988865543
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=5.2e-06 Score=50.09 Aligned_cols=33 Identities=33% Similarity=0.721 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRP 456 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 456 (648)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00036 Score=67.84 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=126.9
Q ss_pred CHHHHHHHHhhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 407 SIFESQRVFNETQE------KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 407 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
++.++...-+.++. ++...+...+.+.........+-.++-+-.+. .-...-|..-+ .....|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 44455545555543 24444555555444333333333333222221 11122333333 45567899999999
Q ss_pred HHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 481 FDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 481 ~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
++.+... .|+ +..+....+.+.+.++..+|.+.++++. ..|+ ...+-.+..++.+.|+..+|+.+++.....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999865 776 7777888999999999999999999876 4465 66778888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 558 AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 558 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+++..|..|+.+|...|+-.++...+-+...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999998876654
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.023 Score=59.81 Aligned_cols=212 Identities=13% Similarity=0.058 Sum_probs=138.6
Q ss_pred cCCChhHHHHHhhcCCC--CCcchHHHHHHhhccC--C---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhH
Q 006364 6 KSGQFDKALCIFNNLNN--PDIVSWNTVLSGFEKS--D---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQ 78 (648)
Q Consensus 6 ~~g~~~~A~~~f~~~~~--p~~~~~~~ll~~~~~~--~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 78 (648)
..+++..|....+++.+ || ..|...+.++... | +|..+++.....+.. |..|+..+-..|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45677788877777653 44 3466667776433 3 888888877766555 88899999999999999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCCChhH----HHHHhccCCCCCcchHHHHHHHHHcCCCC---------hHHHHH
Q 006364 79 LHSLIVKFGLDSEVYVGNALITMYSRWGRLVE----ARRVFDEMPNKDSVSWNAILSGYTQDGDY---------GVEAIL 145 (648)
Q Consensus 79 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~g~~---------~~~a~~ 145 (648)
+|++.... .|+......+..+|.|.+++.. |.+++...++.--.-|+.+- .+.+.-.. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~S-lilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVIS-LILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHH-HHHHhccCCcccccchhHHHHHH
Confidence 99999876 4667778888889999887754 77788877776656666542 22221101 123444
Q ss_pred HHHHHHHCC-CCCChhhHHHHHHHhcCCCChhHHHHHHHH-HHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC
Q 006364 146 ALIEMMRKG-LRLDHVSFTSAASACGHEKNLELGKQIHGV-SIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD 222 (648)
Q Consensus 146 ~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 222 (648)
.++.+.+.+ -.-+..-...-+..+...+++++|..++.. ....-...+...-+.-++.+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 555555443 212222222233445567788899888843 33333344555556777888888888887666555544
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00046 Score=61.15 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=124.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSV-LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
|..++-+....|+.+.|..+++++... + |.+.-...+ ..-+...|.+++|+++++...++ .|+ ..+|-.-+-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHH
Confidence 444556667789999999999999886 4 554322222 12245678999999999999877 575 7777777777
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC---CcHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG---DWEM 578 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 578 (648)
+-..|+.-+|++-+.... +..|...|.-|...|...|+++.|.-.+++++=..|-++-.+..++.++...| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888888888776654 45799999999999999999999999999999999999999999999988776 4555
Q ss_pred HHHHHHHHhh
Q 006364 579 VAILRKGMKS 588 (648)
Q Consensus 579 a~~~~~~m~~ 588 (648)
+.+++.+..+
T Consensus 210 arkyy~~alk 219 (289)
T KOG3060|consen 210 ARKYYERALK 219 (289)
T ss_pred HHHHHHHHHH
Confidence 6677765544
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00012 Score=61.55 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=87.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 445 QFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 445 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
+|++... ..|+. .....+...+...|++++|.+.|+..... .|+ ...+..+...+.+.|++++|...++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 44543 44556666778888999999999888653 454 7788888888999999999998888764
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 522 -GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 522 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
.+.+...+..+...+...|+.+.|...++++.+.+|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345677788888889999999999999999999999876543
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.4e-06 Score=49.16 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.6
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCC
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGLRL 157 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p 157 (648)
.+||++|.+|++.| +++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g-~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAG-DPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 57888888888888 8888888888888888877
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0045 Score=55.50 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
+.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 33444444444444444444556778888888888877633 2333333344556667778888888888752 345
Q ss_pred HHHHHHHHHh----cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHHHHH
Q 006364 459 ITFLSVLTVC----GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPG--GPGLSVLQSL 532 (648)
Q Consensus 459 ~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 532 (648)
.|.+-|..++ ...+.+.+|.-+|++|.++ ..|+..+.+-+..+....|++++|..+++.... ..++.++..+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 5666555554 3345677888888888543 466777777777777777788888777776652 2455555555
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCCCc
Q 006364 533 LGACRIHG-NVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 533 ~~~~~~~g-~~~~a~~~~~~~~~~~p~~~ 560 (648)
+..-...| +.+...+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 54444444 44455566666666666654
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00022 Score=60.45 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 500 MVDMLGRVGRLEEAEELVGQIPGG-PGL----SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+...+...|++++|...|+..... |+. .....|...+...|+++.|...++.. ...+..+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 334444445555555444443311 221 12223344444555555555554331 122233445555666666666
Q ss_pred CcHHHHHHHH
Q 006364 575 DWEMVAILRK 584 (648)
Q Consensus 575 ~~~~a~~~~~ 584 (648)
++++|...++
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 6666665554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00054 Score=58.12 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCM 500 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l 500 (648)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+..... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 34444444 3677777777788777742 222 123334456677788888888888888765 32232 2344556
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGNVEMGERIADAL 552 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 552 (648)
...+...|++++|+..++....+ ..+..+...+..+...|+.+.|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888888776533 34445566677888888888888888765
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.92 E-value=0.044 Score=57.79 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=123.1
Q ss_pred hcccChhhHhHHHHHHHHhCCCCCcchHHHHHHH--HHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHH
Q 006364 68 LDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITM--YSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 68 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~ 142 (648)
...+++..|.+....+.+.. |+. .|...+.+ +.|.|+.++|..+++.... .|..|..++-..|...+ ..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-KLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-hhhH
Confidence 35677888888888887763 443 23334443 3577899999888887654 37778888888888888 8899
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC----------hHH
Q 006364 143 AILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEV----------TGD 212 (648)
Q Consensus 143 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~ 212 (648)
|..+|++.... -|+......+..++.+.+++..-.++--++-+ .++-+.+.+=+++..+...-. +.-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999888764 57777777888888888877665554444444 234455555555555443211 122
Q ss_pred HHHHHhcCCCCC--------chhhHHHhc--CChhhHHHHHH-HHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 006364 213 ANKVFRRMHDRN--------VISWTTMIS--MNREDAVSLFK-EMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLC 281 (648)
Q Consensus 213 A~~~~~~~~~~~--------~~~~~~li~--g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 281 (648)
|.+.++.+.+.+ ...|--++. |.+++|++++. .....-...+...-+--+..+...+.+.+..++-..+
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344444443322 111222222 56666666652 2222222223333334444555556666666655555
Q ss_pred HHhc
Q 006364 282 IKTN 285 (648)
Q Consensus 282 ~~~~ 285 (648)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 5554
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00011 Score=57.00 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+..+...+...|++++|...++... .+.+...+..+...+...|+++.|...++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888887754 22344667777888888899999999999999999988889999999999999
Q ss_pred CcHHHHHHHHHHhh
Q 006364 575 DWEMVAILRKGMKS 588 (648)
Q Consensus 575 ~~~~a~~~~~~m~~ 588 (648)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988877654
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=4.7e-05 Score=55.02 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG-DWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 588 (648)
++.+|..+...+...|+++.|+..++++++.+|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999987654
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.8e-05 Score=46.46 Aligned_cols=31 Identities=26% Similarity=0.705 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGV 454 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 454 (648)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.84 E-value=0.00063 Score=73.33 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=62.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (648)
.+..+..+|.+.|+.+++..+|+++.+- .|+ +.+.+.+...|... ++++|.+++.+.. ..+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV------------~~~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DKEKAITYLKKAI------------YRFIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH------------HHHHh
Confidence 4444444555555555555555555422 343 45555555555555 5555555444321 11223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc--------------------hhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 539 HGNVEMGERIADALMKMEPAGS--------------------GSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~--------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.+++..+..+++++.+.+|++. ..+.-+-+.|...++|+++..+++.+.+..
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 3344444444444444444432 334455577888899999999999887643
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00013 Score=66.33 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=45.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
+.+++.+|+..|...+ .+.|+ ..-|..-..+|.+.|.++.|.+-.+... ..| ...+|..|..++...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555544 33443 4444444555555555555554444433 122 2334555555555555555555
Q ss_pred HHHHHHHhcCCCCchhH
Q 006364 547 RIADALMKMEPAGSGSY 563 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~~ 563 (648)
+.|+++++++|++....
T Consensus 170 ~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHhhhccCCCcHHHH
Confidence 55555555555555333
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00031 Score=57.30 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-CCC----HHHHHHHHHH
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-GPG----LSVLQSLLGA 535 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~ 535 (648)
..+...+...|++++|...|..+.+.+.-.|. ...+..+..++.+.|++++|...++.+.. .|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555555433111111 23344445555555555555555544321 111 2344445555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
+...|+.+.|...++++.+..|+++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55555566666666666655555543
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00022 Score=70.45 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=78.6
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|+++|+++++. .|+ ...|..+..+|.+.|++++|+..++++. .+.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34456678888888888888743 665 7777778888888888888888887764 33456677777888888888
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
++.|...++++++++|.++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888887777766555443
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=2e-05 Score=59.59 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 508 GRLEEAEELVGQIP-GGP---GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 508 g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
|++++|+.+++++. ..| +...|..+..++...|+++.|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555443 112 334455566666666666666666666 5556666666667777777777777777777
Q ss_pred HH
Q 006364 584 KG 585 (648)
Q Consensus 584 ~~ 585 (648)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 153
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0039 Score=55.87 Aligned_cols=149 Identities=10% Similarity=0.092 Sum_probs=108.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML---- 504 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~---- 504 (648)
-...|+..|++++|+...+... ..+... .=...+.+..+.+-|.+.++.|.+ +. +..+.+-|..++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHh
Confidence 3456888899999998887621 222222 222334567788899999999963 22 244555454444
Q ss_pred hhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH-HH
Q 006364 505 GRVGRLEEAEELVGQIPG--GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV-AI 581 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~ 581 (648)
.-.+.+.+|.-+|++|.. +|++.+.+....+|...|++++|+.+++.++..++.+|.+...++-+-...|+-.++ .+
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345678999999999874 588888888888999999999999999999999999999998888887778876554 45
Q ss_pred HHHHHh
Q 006364 582 LRKGMK 587 (648)
Q Consensus 582 ~~~~m~ 587 (648)
.+..++
T Consensus 264 ~l~QLk 269 (299)
T KOG3081|consen 264 NLSQLK 269 (299)
T ss_pred HHHHHH
Confidence 555554
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00039 Score=68.73 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=81.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV 507 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~ 507 (648)
....+...|++++|+.+|++.++.. +-+...|..+..+|...|++++|+..++.+.+ +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999852 23467788888899999999999999999974 4776 88899999999999
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 006364 508 GRLEEAEELVGQIP-GGPGLSVLQSLL 533 (648)
Q Consensus 508 g~~~~A~~~~~~~~-~~~~~~~~~~l~ 533 (648)
|++++|...+++.. ..|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999998865 345444444333
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00039 Score=56.73 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHH
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIPG-GPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLM 566 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 566 (648)
.++..++..+.+.|++++|.+.++.+.. .|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778889999999999999988752 232 3567778899999999999999999999988875 5679999
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 567 SNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
+.++...|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999887653
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.76 E-value=0.054 Score=53.85 Aligned_cols=210 Identities=12% Similarity=0.103 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC---HHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGS---IFESQRVFNETQE----KSEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
.+++..+++..+..-...+..+|..+.+.--..-+ .+.....+++... .-..+|..+++.-.+....+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 44555555555544334444555544433222112 3444444444432 2345788899998999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-
Q 006364 446 FKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG- 523 (648)
Q Consensus 446 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 523 (648)
|.+..+.+..+ +....++++.-++ +++.+-|.++|+.=.+++|-.| .--...++-+...++-..|..+|++...+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988888 5566667776554 5799999999998877755444 33455678888899999999999987633
Q ss_pred --C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 524 --P--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG----SGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 524 --~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
| ...+|..++..-..-||+..+.++-++....-|.+ ...-..+..-|.-.+.+..-..-++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 2 34789999999999999999999988887665522 12333455556666655544444433
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.4e-05 Score=44.76 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=23.9
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCC
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGL 155 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~ 155 (648)
++||++|++|++.| ++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~-~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMG-QFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccc-hHHHHHHHHHHHhHCcC
Confidence 46788888888888 88888888888877664
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.00029 Score=58.74 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=83.5
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
|+.++ ....-....-+-..|++++|..+|+-+. ..-+...|..|...|...++++.|...|..+.-++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55555 3333344455668999999999998654 45677788899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+.+|...|+.++|...++...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999986654
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=9.7e-05 Score=52.56 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=48.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+...+...|+++.|+..++.+++..|.++..+..++.++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999988887754
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00047 Score=63.32 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=91.6
Q ss_pred CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 491 EPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH---GNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 491 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
.|+ ...|..|...|.+.|+++.|..-|.+.. ..+++..+..+..++... ....++..++++++..+|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 575 9999999999999999999999998765 457788888888776544 3567899999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 565 LMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
.|+-.+...|++.+|...|+.|.+..-.-+|..+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999999987654444433
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.06 Score=51.91 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 478 (648)
+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-..+... +-++.-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44444556666666666666666666666666666666666655543321 112355556666666666666666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHh
Q 006364 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVG 518 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (648)
.+...+ | +..-+..|.++|++.+|.+.-.
T Consensus 258 ~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 258 KYIPKI-------P----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHH
Confidence 665542 1 1334555666666666655433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0021 Score=61.23 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV-CGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
.+|..++....+.+..+.|..+|++..+.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888888888888999999999998542 2233444433333 3345778889999999988743 34677888899
Q ss_pred HHhhcCCHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 503 MLGRVGRLEEAEELVGQIPGG-PG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.+.+.|+.+.|..+|++.... |. ..+|...+..-.+.|+.+...++.+++.+.-|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987632 33 358999999999999999999999999998887543
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0016 Score=57.13 Aligned_cols=130 Identities=14% Similarity=0.251 Sum_probs=89.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYS 498 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 498 (648)
....+..+...+...|++++|+..|++.......+. ...+..+...+.+.|++++|...+++..+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777888888888888888888876433332 356777777788888888888888887643 565 66666
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.+..++...|+...+..-++.. ...++.|.+.++++.+.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777777777766554332221 122577888888888888876 6666666666554
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0011 Score=58.27 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
...+..+...+.+.|++++|...+++.. ..++ ...+..+...+...|+++.|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456666677777777777777776653 1121 3567778888888899999999999999888988888888888
Q ss_pred HHHhcCC
Q 006364 569 LYAEKGD 575 (648)
Q Consensus 569 ~~~~~g~ 575 (648)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0039 Score=64.48 Aligned_cols=139 Identities=11% Similarity=0.042 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc--------cCcHHHHHHHHHHhHH
Q 006364 421 KSEFAWTAIISALARH-----GDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGR--------NGMIHKGRHLFDSMLK 486 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~--------~g~~~~a~~~~~~m~~ 486 (648)
.+...|...+.+.... +....|+.+|++..+ ..|+- ..|..+..++.. ..++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3555666666554332 225677777777776 45653 233332222211 0112222333322211
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 487 DYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
......+...|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10011123444444444444555555555555543 3345555555555555555555555555555555555543
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.00094 Score=61.00 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=77.5
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
.+-+.+.+++++|+..|.+.. .+.|++.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 455778899999999999865 445677778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006364 579 VAILRKGMK 587 (648)
Q Consensus 579 a~~~~~~m~ 587 (648)
|++.+++..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 999987544
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0043 Score=54.21 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++...+ +.|+ ..++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44567777777888888888888888876432221 24677777788888888888888888764 3554 555666
Q ss_pred HHHHHh
Q 006364 500 MVDMLG 505 (648)
Q Consensus 500 l~~~~~ 505 (648)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 666665
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.46 E-value=0.00021 Score=51.33 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=43.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...|+++.|.+.++++.+..|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999998876654
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.0003 Score=49.96 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=46.6
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
+...+.+.|++++|.+.|+... ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778888888888888765 224 566788888888889999999999999999888874
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0012 Score=57.75 Aligned_cols=92 Identities=13% Similarity=-0.060 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
...|..++..+...|++++|...+++.. ..| ...+|..+...+...|+.++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777777888888888888887763 112 23578888899999999999999999999999999888888888
Q ss_pred HHH-------hcCCcHHHHHHHHH
Q 006364 569 LYA-------EKGDWEMVAILRKG 585 (648)
Q Consensus 569 ~~~-------~~g~~~~a~~~~~~ 585 (648)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 78888866555543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.005 Score=63.73 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=99.9
Q ss_pred CCCCCCHHHHHHHHHHhcc-----cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHH
Q 006364 452 KGVRPDSITFLSVLTVCGR-----NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV--------GRLEEAEELV 517 (648)
Q Consensus 452 ~g~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 517 (648)
.+.+.|...|...+++... .+..+.|+.+|++..+ ..|+ ...|..+..++... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3456777888888888543 2347899999999985 4898 66776665554332 1234455555
Q ss_pred hhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 518 GQIP----GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 518 ~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+.. ...++.++..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++...
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4422 334557787777777778999999999999999999 578999999999999999999999987654
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0014 Score=50.65 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++...+. .|. ...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHH
Confidence 3445555555566666666665555431 122234444444555555555555555554322 222 23344444444
Q ss_pred hhcCCHHHHHHHH
Q 006364 505 GRVGRLEEAEELV 517 (648)
Q Consensus 505 ~~~g~~~~A~~~~ 517 (648)
...|++++|...+
T Consensus 79 ~~~~~~~~a~~~~ 91 (100)
T cd00189 79 YKLGKYEEALEAY 91 (100)
T ss_pred HHHHhHHHHHHHH
Confidence 4444444444443
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.42 E-value=0.00053 Score=50.11 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=49.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999998877653
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0016 Score=50.04 Aligned_cols=87 Identities=9% Similarity=0.112 Sum_probs=68.1
Q ss_pred HHHHHHHhhcccChhhHhHHHHHHHHhCC-CCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCC
Q 006364 60 YSTALSFCLDHEGFLFGLQLHSLIVKFGL-DSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGD 138 (648)
Q Consensus 60 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 138 (648)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+ -.+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~- 83 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IEN- 83 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHH-
Confidence 34556777778999999999999999999 89999999999887753211111 112
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 006364 139 YGVEAILALIEMMRKGLRLDHVSFTSAASACG 170 (648)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 170 (648)
..-+.+.+|+.|...+++|+..||+.++..+.
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 45688899999999999999999999998764
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.40 E-value=0.00012 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.551 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCcHHHH
Q 006364 549 ADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 549 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 580 (648)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00056 Score=51.60 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 006364 436 HGDYESVMNQFKEMENKGV-RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 513 (648)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|+.+++.. ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3555666666666655322 112333333555555666666666665551 22222 23333345555555666665
Q ss_pred HHHHh
Q 006364 514 EELVG 518 (648)
Q Consensus 514 ~~~~~ 518 (648)
.+.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0029 Score=48.75 Aligned_cols=81 Identities=14% Similarity=0.326 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccC--------cHHHHHHHHHHhHHhcCCCCChH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGV-RPDSITFLSVLTVCGRNG--------MIHKGRHLFDSMLKDYHIEPSPD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 495 (648)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. .+-..+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566667777999999999999999999 899999999999876542 355677889999877 8999999
Q ss_pred HHHHHHHHHhh
Q 006364 496 HYSCMVDMLGR 506 (648)
Q Consensus 496 ~~~~l~~~~~~ 506 (648)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.041 Score=55.68 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=59.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 513 (648)
..+|..+-++++-+++-. .+..+...+..-+-+...+..|-++|.+|-. ...++++....++|.+|
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEA 792 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHh
Confidence 344445555554444322 2334444444444555566667777777622 23567777778888888
Q ss_pred HHHHhhCC-CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 514 EELVGQIP-GGPGLSV-----------LQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 514 ~~~~~~~~-~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
..+-++.| ..|++.. +.-.-.++.+.|+..+|.++++++.
T Consensus 793 FalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 793 FALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 88877776 2233321 1112235556667777777776654
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00032 Score=50.43 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=35.2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQ 530 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 530 (648)
..|++++|+++|+.+... .|+ ...+..++.+|.+.|++++|.++++++. ..|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456777777777777644 553 5666666777777777777777766665 235533333
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.0015 Score=64.59 Aligned_cols=119 Identities=12% Similarity=0.030 Sum_probs=95.6
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-C-----CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhh
Q 006364 88 LDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-K-----DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVS 161 (648)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t 161 (648)
.+.+......+++......+++.+..++-.... | -..|..++|+.|.+.| ..+.++.++..=...|+-||.+|
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~-~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELG-AEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcC-CHHHHHHHHhChhhcccCCChhh
Confidence 344555666777777777777888777666543 1 2345569999999999 99999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 006364 162 FTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (648)
|+.||..+.+.|++..|.++...|...+.-.+..++.--+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888777777776666666665
No 181
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0044 Score=59.07 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=106.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhcccCcHHHHHHHHHHhHHhcCCCCChHH------------
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT--VCGRNGMIHKGRHLFDSMLKDYHIEPSPDH------------ 496 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------ 496 (648)
.++...|++++|...-....+. .++ ..+..+++ ++-..++.+.|...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4566778888887766555442 111 11222222 2345567788888887765 44565221
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 497 -YSCMVDMLGRVGRLEEAEELVGQIP------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 497 -~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
+..=.+-..+.|++.+|.+.+.+.. .+|++..|.....+..+.|+.++|..--+.++.++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1112333567788888888887765 235566666666777788889999888888888888888888888899
Q ss_pred HHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 570 YAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 570 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
+...++|++|.+-++...+..-.+.+..+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~ 359 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRT 359 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99999999988888776544433444333
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0036 Score=54.70 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCChhhHHHHHHHhh-----cccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHH
Q 006364 54 VFDAVTYSTALSFCL-----DHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNA 128 (648)
Q Consensus 54 ~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 128 (648)
..+..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- .-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 347778888887775 457888888899999999999999999999998764 3321 1111
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q 006364 129 ILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNL-ELGKQIHGVSIK 187 (648)
Q Consensus 129 li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~ 187 (648)
+=..+-.-..+.+-|++++++|...|+-||..|+..+++.+++.+.. ....++.-.|.+
T Consensus 108 fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 108 FQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11222222225578999999999999999999999999999887763 344555555544
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.15 Score=49.25 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (648)
.+.+..+.-|...|+...|.++-.. |.+ |+..-|...+.+|+..|+|++-.++... +-++.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455566677778888887777544 455 8899999999999999999998887664 2344668899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.|+..+|..+..++ .+..-...|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888871 2255678899999999998775443
No 184
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.058 Score=52.48 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=108.0
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEK-------SEFAWTAIISALAR---HGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.++-.|-...+++...++.+.+... ....-.....++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888899999998888764 22223344556667 8999999999999777667788888888776
Q ss_pred Hhc---------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-HH---HHHHHH---hhC-----C--CC
Q 006364 467 VCG---------RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR-LE---EAEELV---GQI-----P--GG 523 (648)
Q Consensus 467 a~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-----~--~~ 523 (648)
.|- .....++|+..|.+. +.+.|+..+=-.++.++...|. .+ +..++- ... . ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 652 233578888888876 4667774332223333334443 21 222222 111 1 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.+--.+.+++.++.-.||.+.|.++++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4455567899999999999999999999999987653
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.20 E-value=0.001 Score=47.86 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG-NVEMGERIADALMKMEP 557 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 557 (648)
...|..+...+...|++++|+..|++.. .+.++.+|..+..++...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556666667777777777777766644 3345566777777777777 67888888888877776
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.18 E-value=0.27 Score=48.11 Aligned_cols=440 Identities=13% Similarity=0.070 Sum_probs=209.1
Q ss_pred cccChhhHhHHHHHHHHhCCCCC------cchHHHHHHHHHhCCChhHHHHHhccCCCC-CcchHHHHHHHH--HcCCCC
Q 006364 69 DHEGFLFGLQLHSLIVKFGLDSE------VYVGNALITMYSRWGRLVEARRVFDEMPNK-DSVSWNAILSGY--TQDGDY 139 (648)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~g~~ 139 (648)
+++++.++..+|.++.+.. ..+ ....+.++++|.. .+++.....+....+. ....|-.+..++ -+.+ .
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k-~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK-E 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh-h
Confidence 5667777777777776542 122 1234456666653 3344433333333221 123344444333 2445 6
Q ss_pred hHHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcC----CCCcchHHHHH
Q 006364 140 GVEAILALIEMMRK--GLRL------------DHVSFTSAASACGHEKNLELGKQIHGVSIKMGY----GTHVSVGNVLM 201 (648)
Q Consensus 140 ~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li 201 (648)
+.+|++.+..-... +-+| |..-=+..+.++...|.+.+++.++..+...=+ .-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 66777666654433 2221 222224456677788888888888877765443 36778888877
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHC------CCCCChhhHHHHHHHHhcCC--chHH
Q 006364 202 STYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLD------GVCPNDVTFIGLIHAISIGN--LVKE 273 (648)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~--~~~~ 273 (648)
-+++++--++--......+- || | ++-++-...+|... .+.|....+..++....... .+.-
T Consensus 175 lmlsrSYfLEl~e~~s~dl~-pd---y-------YemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLY-PD---Y-------YEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHhHHHHHHHHHhcccccC-hH---H-------HHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccH
Confidence 77766432221111100000 10 1 11112222222111 23344444444444332221 1222
Q ss_pred HHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChHHHHHHHhhcC--------CCCcccHHHHHHHHHhcCCcHHHHHHH
Q 006364 274 GRMIHGLCIKTNFLSEPS-VCNCLITMYARFESMQDSEKVFDELS--------CREIISWNALISGYAQNGLSLAAVQAF 344 (648)
Q Consensus 274 a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (648)
-.+++......-+.|+.. +...|+.-+.+ +.+++..+.+.+. +.=+.++..++...++.++...|-..+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 233343333444444432 22334433333 3344433333332 122356666777777777777776666
Q ss_pred HHhHhCCCCCHHHHH-------HHHHHhccCch--hhHHHHHHHHHHHHHhCCCCchhHHHHHH---HHHhhcCC-HHHH
Q 006364 345 FGVIKESKPNAYTFG-------SVLNAVGAAED--ISLKHGQRCHSHIIKVGLDSDPIVGSALL---DMYGKRGS-IFES 411 (648)
Q Consensus 345 ~~m~~~~~p~~~~~~-------~ll~a~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A 411 (648)
.-+.- ..|+...-. .+-+..+.-.. -.+..-..++..+....+..-. ....|+ .-+.+.|. -++|
T Consensus 322 ~lL~~-ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKI-LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHh-cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHH
Confidence 54433 222221111 11111110000 0222333344444433332211 112222 23444555 7778
Q ss_pred HHHHhhcCC---CChhHHHHHH----HHHHhC---CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHH--hcccCcHH
Q 006364 412 QRVFNETQE---KSEFAWTAII----SALARH---GDYESVMNQFKEMENKGVRPDSIT----FLSVLTV--CGRNGMIH 475 (648)
Q Consensus 412 ~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a--~~~~g~~~ 475 (648)
.++++.+.+ -|..+-|... ..|.+. ..+.+-+.+-+-..+.|+.|-.+. -|.|..| +-..|++.
T Consensus 400 lnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 400 LNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 888876653 2444333322 122221 223334444444456677765432 2333332 34568888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 006364 476 KGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS 531 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 531 (648)
++.-+-.-.. .+.|++.+|..+.-++....++++|..++..+| |+..++++
T Consensus 480 kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 480 KCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 8765544443 568888899888888888889999999998886 45555544
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.0059 Score=53.41 Aligned_cols=96 Identities=18% Similarity=0.345 Sum_probs=75.2
Q ss_pred HHHhhc--CCCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc--------------
Q 006364 413 RVFNET--QEKSEFAWTAIISALAR-----HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN-------------- 471 (648)
Q Consensus 413 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 471 (648)
..|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44566677777777664 466777777889999999999999999999887543
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006364 472 --GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 472 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 509 (648)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 346778999999955 5999999999999999988875
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.007 Score=60.02 Aligned_cols=128 Identities=11% Similarity=-0.009 Sum_probs=105.3
Q ss_pred HHHHHHh---CCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHh--CCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 44 FALRMNL---IGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF--GLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 44 ~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
++..|.+ .+.+.+......++..+....+++.+..++-..... ...--+.+..++|+.|.+.|..+.+..++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444432 345668888889999999988999999988888765 23334566779999999999999999999875
Q ss_pred CC----CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCC
Q 006364 119 PN----KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHE 172 (648)
Q Consensus 119 ~~----~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (648)
.. ||..++|.+|..+.+.| ++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~-~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKG-NYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcc-cHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 54 89999999999999999 9999999999998888888888888777777554
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.016 Score=46.46 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=67.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPD--SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLG 505 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 505 (648)
+..++-..|+.++|+.+|++..+.|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677788999999999999999887665 35667788888999999999999999877632211 1222333455778
Q ss_pred hcCCHHHHHHHHhh
Q 006364 506 RVGRLEEAEELVGQ 519 (648)
Q Consensus 506 ~~g~~~~A~~~~~~ 519 (648)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887654
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.0051 Score=58.60 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR-VGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
.+|..++..+.+.+..+.|+.+|..+.+.... +...|......-.+ .++.+.|.++|+... ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999744222 34555555555333 566677999999876 45678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+...++.+.+..+|++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766554 57888888888999999999999888764
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.09 E-value=0.01 Score=49.44 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=38.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV 507 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~ 507 (648)
..-+...|++++|..+|+-... +.|.. .-|..|..+|...|++++|+..|.... .+.|+ +..+-.+..++...
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHc
Confidence 3334445555555555554444 22322 233334444444555555555555443 23343 44444444455555
Q ss_pred CCHHHHHHHHh
Q 006364 508 GRLEEAEELVG 518 (648)
Q Consensus 508 g~~~~A~~~~~ 518 (648)
|+.+.|.+.|+
T Consensus 117 G~~~~A~~aF~ 127 (157)
T PRK15363 117 DNVCYAIKALK 127 (157)
T ss_pred CCHHHHHHHHH
Confidence 55555444444
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.03 E-value=0.33 Score=46.48 Aligned_cols=283 Identities=15% Similarity=0.152 Sum_probs=181.8
Q ss_pred HHHHHHHHHh--cCChHHHHHHHhhcC---CCCcccHHHHHHH--HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh
Q 006364 293 CNCLITMYAR--FESMQDSEKVFDELS---CREIISWNALISG--YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV 365 (648)
Q Consensus 293 ~~~li~~~~~--~g~~~~a~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~ 365 (648)
|.+|-.++.- .|+-..|.+.-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|...-..-.--+..|.-..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleA 164 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence 5666555544 467777776655433 3455444445443 44679999999999999762222222333444444
Q ss_pred ccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHH---h
Q 006364 366 GAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ-----EKSEF--AWTAIISALA---R 435 (648)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~ 435 (648)
-+.| +.+.+.+.-...-..- +--.-...+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+ -
T Consensus 165 qr~G--areaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 165 QRLG--AREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred Hhcc--cHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 5566 7777777666555432 2234566788899999999999999998654 34432 2223333222 1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH--
Q 006364 436 HGDYESVMNQFKEMENKGVRPDSIT-FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE-- 512 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~-- 512 (648)
..+...|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+. .|.+..+...+ +.|.|+.-.
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHH
Confidence 2346666666555554 6777543 334456788999999999999999754 67666654443 346665322
Q ss_pred HHHH--HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHh
Q 006364 513 AEEL--VGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK-GDWEMVAILRKGMK 587 (648)
Q Consensus 513 A~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~ 587 (648)
..+. +..|. +.+....-++..+-...|++..|..-.+.+....|.. ++|.+|+++-... |+-.++...+-+-.
T Consensus 315 lkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 315 LKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 2221 23333 3455666777788889999999999999998888875 7899999997665 99888887775544
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.00 E-value=0.0014 Score=41.94 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
.+|..+..++...|+.+.|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999888765
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.023 Score=48.15 Aligned_cols=148 Identities=9% Similarity=0.087 Sum_probs=96.3
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 514 (648)
+.=+.+....-..+-.+ ..|+...-..|..+..+.|++.+|...|++.... -+.-|....-.+..+....+++.+|.
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 33344544443333222 5677666677778888888888888888887542 23335677777777788888888888
Q ss_pred HHHhhCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 515 ELVGQIP-GGP---GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 515 ~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..+++.. .+| ++.....+...+...|..+.|+..++.+...-|. +..-...+..+.++|+.+++..-+..+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8777643 111 2223445667788888888888888888876664 345555667778888777765544433
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.0082 Score=48.19 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPA---GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
+-.+.+.++..|+.++|..+++...+..|+ +......++-++...|++++|.+.+
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334445555555555555555555555454 4444445555555556666655544
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.93 E-value=0.0044 Score=60.81 Aligned_cols=64 Identities=11% Similarity=-0.034 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS---YVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+...|+.+..+|...|++++|...++++++++|+++.. |..++.+|...|+.++|...+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555432 55555555555555555555554443
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.93 E-value=0.079 Score=50.73 Aligned_cols=20 Identities=10% Similarity=-0.062 Sum_probs=10.8
Q ss_pred HHHHHhcCCcHHHHHHHHHh
Q 006364 328 ISGYAQNGLSLAAVQAFFGV 347 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m 347 (648)
...|-..+++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 44555556666666665554
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.0034 Score=45.71 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=50.4
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 502 DMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
..|.+.+++++|.++++.+. .+.++..|......+...|+++.|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888765 345666777788888888999999999999999988876655433
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.019 Score=53.61 Aligned_cols=100 Identities=9% Similarity=0.136 Sum_probs=53.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-----CCCHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-----GPGLSVLQSLLG 534 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~ 534 (648)
|...+.-..+.|++++|+..|+.+.+.+.-.+- ...+-.+..+|...|++++|...|+.+.. +.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334446666666666666654221111 23455556666666666666666555431 112334444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.+...|+.+.|...++.+++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56666777777777777766666654
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.91 E-value=0.0075 Score=56.36 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG---SGSYVL 565 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 565 (648)
...|..-+..+.+.|++++|...|+.+. ..|+ +.++..+..++...|+++.|...|+++.+..|++ +.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4456666666677899999999988765 2243 3567788899999999999999999999988775 566777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.++++.+.+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.11 Score=48.11 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+..-|.+.|++.-|..-++.+++.-|+. +.+...+.++|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455788899999999999999887765 4567888999999999999999887653
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.87 E-value=0.31 Score=45.24 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
.-|.+.|.+..|..-++.+.+++.-.|. .+....++.+|...|..++|....
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3355556666666666666655544443 445555556666666666655544
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.0065 Score=57.81 Aligned_cols=129 Identities=10% Similarity=-0.013 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSM---LKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGPGL 526 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~ 526 (648)
..|..|...|.-.|+++.|+...+.- .+.||-... ...+..+.+++.-.|+++.|.+.++... .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666667777788999998776543 244554443 6778889999999999999998887532 11234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKM----E--PAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
....+|.+.|....+++.|+.+..+-+.+ + .....+|.+|+++|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45567778888888888888877665432 2 3456789999999999999999988776543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.14 Score=46.21 Aligned_cols=168 Identities=8% Similarity=0.005 Sum_probs=112.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC--C--------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK--S--------EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSV 464 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 464 (648)
+++|...+.-..-+++-...++.-..+ . ...-++++..+.-.|.+.-.+.++++.++...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 344555554444444444444433221 1 234567778888889999999999999987656667777788
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhc----CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHH
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDY----HIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG--PGLSVLQSLLGACRI 538 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~ 538 (648)
.+.-...||.+.|..+|+...+.. ++.-.......+...|.-++++.+|...+.+++.. -++...|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888889999999999999765442 22222333334445566677888888888887733 344444544444556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|+...|.+..+.+.+..|.....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchh
Confidence 788899999999999888875443
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.17 Score=43.12 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
.--.|..++...|+..+|...|++...--+.-|......+.++....++...|...++.+.+...-.-++...-.+...|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 33445566666666666666666665533444555566666666666666666666666544311111234444555666
Q ss_pred hhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 006364 505 GRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
...|+.++|+.-|+-.. .-|+...-.-...-+.++|+..++.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 66666666666665443 2244333222333344555444443
No 206
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.68 E-value=0.63 Score=44.55 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHh-cCCCCC--hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVR-----PDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKD-YHIEPS--PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~ 495 (648)
.+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...||+..|.+.++..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556778889999999999999998764332 2221 2333444566778999999999988633 123223 44
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHhhCC
Q 006364 496 HYSCMVDMLGR--VGRLEEAEELVGQIP 521 (648)
Q Consensus 496 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 521 (648)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666776643 235677777777765
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.029 Score=47.59 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh-----hCCCccCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK-----SKGVRKEV 595 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 595 (648)
.+...++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.+++++++ +.|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4566777888899999999999999999999999999999999999999999999998774 34665554
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=1.2 Score=46.19 Aligned_cols=236 Identities=8% Similarity=0.069 Sum_probs=111.9
Q ss_pred CCChhhHHHHHHHhhcccChhhHhHHHHHHHHh-CCC--------CCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcc
Q 006364 54 VFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF-GLD--------SEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSV 124 (648)
Q Consensus 54 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 124 (648)
.|.+..|..+.......-.++.|...|-+...- |++ .+.....+=+.+| .|.+++|.+++-.+.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 466666766666655555566666555443211 111 1111122223332 47888888888888777643
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD----HVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVL 200 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 200 (648)
|..+.+.| ++-...++++. -|-..| ...|+.+-..++....++.|.+.+..-.. ....
T Consensus 767 -----ielr~klg-DwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 767 -----IELRKKLG-DWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -----HHHHHhhh-hHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 44455555 55444443332 111111 12344444444444445555544443211 1123
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 006364 201 MSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGL 280 (648)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 280 (648)
+.+|.+...+++-+.+.+.+++ |....-.+..++.+.|.-++|.+.|-.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-------------------------------~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-------------------------------DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-------------------------------ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 4444444444444444444433 333333444555555665555544422
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHH--------------HHHHHHHhcCCcHHHHHHHHH
Q 006364 281 CIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWN--------------ALISGYAQNGLSLAAVQAFFG 346 (648)
Q Consensus 281 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------~li~~~~~~g~~~~A~~~~~~ 346 (648)
.+.+ .+-+..|...+++.+|.++-++..-|.+.+.- --|..+.+.|++-+|.+++.+
T Consensus 878 ---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 878 ---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred ---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 1111 23345566666666666666655444332211 123344556666666677666
Q ss_pred hHh
Q 006364 347 VIK 349 (648)
Q Consensus 347 m~~ 349 (648)
|.+
T Consensus 949 mae 951 (1189)
T KOG2041|consen 949 MAE 951 (1189)
T ss_pred HhH
Confidence 654
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.018 Score=55.26 Aligned_cols=82 Identities=6% Similarity=0.056 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDID 606 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 606 (648)
.++..|.-.+.+.+++..|.+.-++.++++|+|......-+.+|...|+++.|...++++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------ 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------ 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH------------------
Confidence 45667777788888899999999999999999999999999999999999999998887763
Q ss_pred ceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 607 GLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 607 ~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
..|.++.|...|..|..+++
T Consensus 320 ----------~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 320 ----------LEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred ----------hCCCcHHHHHHHHHHHHHHH
Confidence 35666777777777777766
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.033 Score=45.26 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 453 GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 453 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
...|+..+..+++.+|+..|++..|+++.+...+.|+++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4667888888888888888888888888888888888766677777776543
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.47 Score=48.49 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCChhHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhH
Q 006364 162 FTSAASACGHEKNLELGKQI--HGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDA 239 (648)
Q Consensus 162 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a 239 (648)
|+..=++|.+..++.--+-+ ++.+++.|-.|+... +...++-.|++.+|-++|.+- |.-..|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~-------------G~enRA 664 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS-------------GHENRA 664 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc-------------CchhhH
Confidence 33344445554444433322 334455565565543 345566677888888887654 344567
Q ss_pred HHHHHHHH
Q 006364 240 VSLFKEMR 247 (648)
Q Consensus 240 ~~~~~~m~ 247 (648)
+++|..|+
T Consensus 665 lEmyTDlR 672 (1081)
T KOG1538|consen 665 LEMYTDLR 672 (1081)
T ss_pred HHHHHHHH
Confidence 77776665
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.38 E-value=0.0032 Score=46.58 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKM----EPA---GSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555555432 111 1345666666666666666666666554
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.38 E-value=0.16 Score=40.56 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=88.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
+.-.|..++..++..+...+ .+..-+|.++.-....-+-+-..+.++..-+-|.+.|- .....++.+|.+.|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcch--
Confidence 34567888888888887763 34555666665555555556666666666444333331 1122345555555532
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
.......+.+...+|.-+.-.+++..+.+.+..+|+....++++|.+.|+..++.+++.+.-++|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344556778889999999999999988877888999999999999999999999999999999875
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.37 E-value=1.2 Score=43.91 Aligned_cols=432 Identities=12% Similarity=0.095 Sum_probs=227.2
Q ss_pred ccCCChhHHHHHhhcCCC-----CC----cchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHH--hhccc
Q 006364 5 CKSGQFDKALCIFNNLNN-----PD----IVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSF--CLDHE 71 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~~-----p~----~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~ 71 (648)
-+.+++.+|..+|.++-+ |. .+.-+.+|++|-... .....+....+. .| ...|-.+..+ +-+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 467899999999998863 22 223567888887776 333333333332 22 3344445444 34678
Q ss_pred ChhhHhHHHHHHHHh--CCC------------CCcchHHHHHHHHHhCCChhHHHHHhccCCC--------CCcchHHHH
Q 006364 72 GFLFGLQLHSLIVKF--GLD------------SEVYVGNALITMYSRWGRLVEARRVFDEMPN--------KDSVSWNAI 129 (648)
Q Consensus 72 ~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 129 (648)
.++.|.+.+..-... +.. +|...-+..++++...|++.+++.++++|.+ -|..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888888777655 322 2444556678889999999999999998864 277788875
Q ss_pred HHHHHcC-------CC-------ChHHHHHHHHHHHHC------CCCCChhhHHHHHHHhcCC--CChhHHHHHHHHHHH
Q 006364 130 LSGYTQD-------GD-------YGVEAILALIEMMRK------GLRLDHVSFTSAASACGHE--KNLELGKQIHGVSIK 187 (648)
Q Consensus 130 i~~~~~~-------g~-------~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~ 187 (648)
+-.+.++ +. .++-++-...+|... .+.|-...+..++....-. ..+.--.+++....+
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 5444332 10 112222222223221 2344444444444433221 223333444444444
Q ss_pred hcCCCCcc-hHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 006364 188 MGYGTHVS-VGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAIS 266 (648)
Q Consensus 188 ~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 266 (648)
.-+.|+-. +...|+.-+.+ +.+++..+.+.+..- + .+.+.+ -=..+|..++..+.
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--------------~----i~~Lke----~li~~F~~~Ls~~V 309 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--------------K----IEKLKE----ELIDRFGNLLSFKV 309 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--------------h----HHHHHH----HHHHHHHHHHHHHH
Confidence 44555432 22333333333 333333332221100 0 011111 12346778888888
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCchhHHH-------HHHHHHh----cCChHHHHHHHhhcCCCCccc---HHHHH---H
Q 006364 267 IGNLVKEGRMIHGLCIKTNFLSEPSVCNC-------LITMYAR----FESMQDSEKVFDELSCREIIS---WNALI---S 329 (648)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~----~g~~~~a~~~~~~~~~~~~~~---~~~li---~ 329 (648)
+.++...|.+.+..+.-. .|+..+... +.++.+. .-+..+=..+|......|+.. -.-|+ .
T Consensus 310 k~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 310 KQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 888888888888776543 343333222 2222221 112333344555555444421 11122 2
Q ss_pred HHHhcCC-cHHHHHHHHHhHhCCCCCHHHHHHHHH----Hhcc---CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006364 330 GYAQNGL-SLAAVQAFFGVIKESKPNAYTFGSVLN----AVGA---AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDM 401 (648)
Q Consensus 330 ~~~~~g~-~~~A~~~~~~m~~~~~p~~~~~~~ll~----a~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (648)
-+-+.|. -++|+++++...+-.+-|...-+.+.. +|.+ .. ....-..+-+.+.+.|++|-.+.-.-+.+
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~--~~~rLlkLe~fi~e~gl~~i~i~e~eian- 464 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMH--AIPRLLKLEDFITEVGLTPITISEEEIAN- 464 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhcCCCcccccHHHHHH-
Confidence 2334554 788999998887733334433333321 1111 11 23333344444445555543332211111
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.+++|+- +..+|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++
T Consensus 465 -----~LaDAEy-------------------Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 465 -----FLADAEY-------------------LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred -----HHHHHHH-------------------HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1122222 3457888887765555555 7888888888887888888899999988
Q ss_pred HHhHHhcCCCCChHHHHHH
Q 006364 482 DSMLKDYHIEPSPDHYSCM 500 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l 500 (648)
..+ +|+..+++.=
T Consensus 519 ~~L------P~n~~~~dsk 531 (549)
T PF07079_consen 519 QKL------PPNERMRDSK 531 (549)
T ss_pred HhC------CCchhhHHHH
Confidence 754 6666666543
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.35 E-value=0.0076 Score=44.56 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-----GG---PG-LSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..+|+.+...|.+.|++++|+..+++.. .. |+ ..++..+...+...|++++|++.++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6789999999999999999999987654 11 33 55788899999999999999999998753
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=96.30 E-value=0.077 Score=52.48 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
.|+.....+..+....++++.|...++++..++|+.+.+|...+.+..-.|+.++|.+.+++
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444445555555555555555555555555555555555555555555544
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.30 E-value=0.14 Score=46.10 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=37.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCcHHHH
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSG---SYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 580 (648)
+...+.+.|.+..|..-++.+++.-|+.+. ....++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 355678899999999999999999888644 5678888899999887443
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.30 E-value=0.57 Score=42.23 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 513 (648)
+..-|.+.|.+..|..-++.+++++.-.|. ......|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344566677777777777777766443333 44556666666666666543
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.29 E-value=1.1 Score=43.02 Aligned_cols=244 Identities=15% Similarity=0.083 Sum_probs=113.8
Q ss_pred cCChHHHHHHHhhcCCC-Cc--ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHH
Q 006364 303 FESMQDSEKVFDELSCR-EI--ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRC 379 (648)
Q Consensus 303 ~g~~~~a~~~~~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~ 379 (648)
.|+.+.|.+-|+.|... .. .-...|.-.-.+.|..+.|..+-++.-..-+--.......+...+..| +++.+.++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g--dWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG--DWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC--ChHHHHHH
Confidence 46777777777766532 11 112222223334566666655555544433334455566666666666 77777776
Q ss_pred HHHHHHhC-CCCchhH--HHHHHHHHhh---cCCHHHHHHHHhhcC--CCChh-HHHHHHHHHHhCCChHHHHHHHHHHH
Q 006364 380 HSHIIKVG-LDSDPIV--GSALLDMYGK---RGSIFESQRVFNETQ--EKSEF-AWTAIISALARHGDYESVMNQFKEME 450 (648)
Q Consensus 380 ~~~~~~~~-~~~~~~~--~~~li~~~~~---~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (648)
.+.-.... +.++..- -..|+.+-+. ..+...|...-.+.. .||.+ .--.-..++.+.|+..++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 66554322 2222211 1111111110 112233333222211 23322 22223455666777777777777666
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH
Q 006364 451 NKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSV 528 (648)
Q Consensus 451 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 528 (648)
+....|+.. .+-...+.|+. ++.-++...+--.++|+ .+....+..+-...|++..|..--+... ..|....
T Consensus 291 K~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 291 KAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 654444431 11123344432 22222222222234555 5555556666666666665554444332 3456666
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 006364 529 LQSLLGACRI-HGNVEMGERIADALMK 554 (648)
Q Consensus 529 ~~~l~~~~~~-~g~~~~a~~~~~~~~~ 554 (648)
|..|...-.. .||-.++.+.+.+..+
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 6555554333 3666666665555543
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.21 Score=45.10 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=95.0
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHH----
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSA---- 397 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 397 (648)
.-+.++..+.-.|.+.-.+..+++..+ ..+.++.....+.+.-.+.| +.+.+...++...+..-..+...++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 445666777777888888888888888 55667777777888888888 88888888887776543444333333
Q ss_pred -HHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006364 398 -LLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL 462 (648)
Q Consensus 398 -li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 462 (648)
....|.-..++..|...|+++... |+..-|.-.-++.-.|+...|++.++.|... .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 334455677888888888777653 5666666666667778888888888888873 45544444
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.12 Score=49.50 Aligned_cols=152 Identities=13% Similarity=0.019 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH----HHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHh---cCC-CCChH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEM----ENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKD---YHI-EPSPD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~ 495 (648)
.|..|.+.|.-.|+++.|+..-+.= ++-|-+.. ...+..+..++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666677777777654432 22232222 245666777777778888888777764311 111 11244
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-Cch
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP--------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME-----PA-GSG 561 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----p~-~~~ 561 (648)
..-+|.+.|.-...+++|+..+.+-. .-.....+-+|..++...|+.+.|....++.++.. |. ...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 45566777777777788877765432 11234456677888888888888887777766532 22 233
Q ss_pred hHHHHHHHHHhcCCc
Q 006364 562 SYVLMSNLYAEKGDW 576 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~ 576 (648)
.-..|.+.-...|.-
T Consensus 357 ar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 357 ARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhHHHHHHhCCC
Confidence 445555555555543
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.96 E-value=0.18 Score=41.50 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHhhcCCHHHHHHHHhhCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHh
Q 006364 501 VDMLGRVGRLEEAEELVGQIPG----G-PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG---SYVLMSNLYAE 572 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 572 (648)
.....+.|++++|.+.|+.+.. . -...+-..|+.++...++++.|...+++.++++|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3444577888888888776651 1 23345566788899999999999999999999988765 34444444444
Q ss_pred c
Q 006364 573 K 573 (648)
Q Consensus 573 ~ 573 (648)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=2 Score=41.87 Aligned_cols=206 Identities=12% Similarity=0.035 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHH--HHhhcCCHHHHHHHHhhcCCCChh---------------HHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLD--MYGKRGSIFESQRVFNETQEKSEF---------------AWTAIISALA 434 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~ 434 (648)
+.+.+..+-..+.+..-. ..+...++ ++--.++.+.|...|++...-++. .|..=.+-..
T Consensus 184 ~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred cchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 666776666665554321 11112222 223356788888888876643222 2333445567
Q ss_pred hCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 435 RHGDYESVMNQFKEMENK---GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
+.|++..|.+.|.+.+.. .++|+...|.....+..+.|+..+|+.-.+... .+.|. +..|..-..++...++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998863 456667778888888899999999999888775 56776 66666667778888999
Q ss_pred HHHHHHHhhCC-CCCCH---HHHHHHHHHHH---------------HcCCHHHHHHHHHHHHhcCCCCc--------hhH
Q 006364 511 EEAEELVGQIP-GGPGL---SVLQSLLGACR---------------IHGNVEMGERIADALMKMEPAGS--------GSY 563 (648)
Q Consensus 511 ~~A~~~~~~~~-~~~~~---~~~~~l~~~~~---------------~~g~~~~a~~~~~~~~~~~p~~~--------~~~ 563 (648)
++|.+-+++.. ...+. .+|....-++. ...+.+.....-+.++...|+-. .-+
T Consensus 338 e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kF 417 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKF 417 (486)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHH
Confidence 99999887643 22222 22222222222 11222222222233344445422 136
Q ss_pred HHHHHHHHhcCCcHHHHHHH
Q 006364 564 VLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~ 583 (648)
...+++|...++..+..+.-
T Consensus 418 kevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 418 KEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHhcCHHHHhhcc
Confidence 67788888888887776654
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.084 Score=50.88 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=98.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 509 (648)
.+.|.+.|++..|...|++.... -. +...-+.++..... ..-..++..+.-++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677888888888888876642 00 01111111111111 1123456777888899999
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH-HHHHHHH
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV-AILRKGM 586 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 586 (648)
+.+|++..++.. .++++-.+-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888765 4577778778889999999999999999999999999999988888888777666554 7778877
Q ss_pred hh
Q 006364 587 KS 588 (648)
Q Consensus 587 ~~ 588 (648)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.74 E-value=0.094 Score=42.62 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhH--------------HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 457 DSITFLSVLTVCGRNGMIHKGRHLFDSML--------------KDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 457 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
|..++..++.++++.|+++....+.+..- ......|+.....+++.+|+..|++..|+++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455666666666666666665554431 112344555555566666666666666655554332
Q ss_pred ---CCCCHHHHHHHHHH
Q 006364 522 ---GGPGLSVLQSLLGA 535 (648)
Q Consensus 522 ---~~~~~~~~~~l~~~ 535 (648)
.+-+..+|..|+.-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 23335555555543
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.3 Score=45.36 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC---CHHHHHHHHhhCC--CCCCHHHHH
Q 006364 457 DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG---RLEEAEELVGQIP--GGPGLSVLQ 530 (648)
Q Consensus 457 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~~~~~~~~ 530 (648)
|...|..|..+|...|+.+.|..-|....+ +.|+ ...+..+..++.... ...++..+++++. .+.++.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 456666666666666666666666666643 3443 555555555543332 3455666666654 233444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
-|...+...|++.+|...++.+++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 555666777777777777777777666553
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.64 E-value=0.12 Score=46.96 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=78.5
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----------
Q 006364 410 ESQRVFNETQ--EKSEFAWTAIISALARH-----GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG---------- 472 (648)
Q Consensus 410 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 472 (648)
..+..|.... ++|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566555 56777888888877654 556666777899999999999999999999876543
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006364 473 ------MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 473 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 510 (648)
+-+-++.++++|. .+|+.||.++-..|++++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2345789999995 559999999999999999999864
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.56 E-value=0.082 Score=52.23 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGL----SVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
...+..+..+|.+.|++++|+..+++.. ..|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444455555555555555555554422 23332 23455555555555555555555555544
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.12 Score=47.22 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP----GGP-GLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a 545 (648)
|++..|..-|...++.|.-.+ ....+-.|..++...|++++|...|..+. ..| -+..+-.|.......|+.+.|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 445555555544444422111 13333344444444444444444443321 111 123344444444455555555
Q ss_pred HHHHHHHHhcCCCCc
Q 006364 546 ERIADALMKMEPAGS 560 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~ 560 (648)
...++++.+.-|..+
T Consensus 235 ~atl~qv~k~YP~t~ 249 (262)
T COG1729 235 CATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHCCCCH
Confidence 555555555555443
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=4.4 Score=42.72 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=56.5
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMY 402 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (648)
+.+--+.-+..-|+..+|.++-.+. --||...|---+.+++..+ ++++-+++-.. ..++.-|.-++..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~wLk~~aLa~~~--kweeLekfAks------kksPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWWLKLTALADIK--KWEELEKFAKS------KKSPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHHHHHHHHHhhh--hHHHHHHHHhc------cCCCCCchhHHHHH
Confidence 3444445555555555555544333 2355555555555555555 55444433221 11244455566666
Q ss_pred hhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 006364 403 GKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
.+.|+.++|.+.+.....-. -...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHH
Confidence 66667777766665554311 3455666666666666543
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.35 E-value=0.15 Score=43.24 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH----HhcCCCCChHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML----KDYHIEPSPDH 496 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 496 (648)
...++..+...|++++|+.+.+++... -+-|...|..++.++...|+...|.+.|+.+. +++|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666777777777777777764 23456677777777777777777777776653 34577776554
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.33 E-value=3.2 Score=40.88 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=105.6
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHH-HH
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKG-VRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDH-YS 498 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~ 498 (648)
+-...|...++...+....+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|..+|+.=... -||... -.
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345678889998888888999999999999988 6778888888887554 57888999999876655 355333 24
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCCCC--CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIPGG--PG--LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
-.+.-+.+.++-+.|..+|+....+ .+ ..+|..++..-..-|++..+..+-+++.+.-|...
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 4566677889999999999865411 22 56889999988999999999988888888888753
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=4.7 Score=42.54 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006364 455 RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLG 534 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 534 (648)
.-...|.+--+.-+...|+-.+|.++-.+. . .||...|-.-+.+++..+++++-+++-+.+.. +.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHH
Confidence 334445566666777889999998887665 2 58888888889999999999999998887763 344677889
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
+|.+.|+..+|.+++-+.-.+ .-...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 999999999999987765332 157788999999999887653
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.28 E-value=6 Score=44.13 Aligned_cols=111 Identities=12% Similarity=0.006 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVD 502 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~ 502 (648)
.|.+...-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+-.++. ..-+ ..+-..|+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS----EGKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHH
Confidence 344444444445555555555544321 1223556666666666666665552 1112 222355666
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
.+...++.-+|-++..+....|.. .+..+++...+++|.++.....
T Consensus 1008 ~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 666777777777776665544332 2233445555666666655543
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.25 E-value=0.15 Score=46.74 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
.|+.-+..| +.|++..|..-|...+... +-+ ...+-.|..++...|++++|..+|..+.+.++-.|. ++.+--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 466555544 5677999999999988852 211 234556888999999999999999999999888887 6899999
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCC-CCH
Q 006364 501 VDMLGRVGRLEEAEELVGQIPGG-PGL 526 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~~-~~~ 526 (648)
.....+.|+.++|...+++...+ |+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999887633 443
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.24 E-value=0.15 Score=46.49 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=83.7
Q ss_pred HHHHHhccCC--CCCcchHHHHHHHHHcC-----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCCh-------
Q 006364 110 EARRVFDEMP--NKDSVSWNAILSGYTQD-----GDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNL------- 175 (648)
Q Consensus 110 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~------- 175 (648)
-.++.|...+ ++|..+|-+.+..|... + ..+=.-..++.|.+.|+.-|..+|..||+.+-+..-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~-HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRT-HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456677776 57888898888888654 3 5555566678899999999999999999987654422
Q ss_pred ---------hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH-HHHHHHhcCC
Q 006364 176 ---------ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTG-DANKVFRRMH 221 (648)
Q Consensus 176 ---------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~ 221 (648)
+=+..++++|..+|+.||..+-..|++++++.|-.- +..++.-.|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 236789999999999999999999999999887532 3334333333
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.16 E-value=0.22 Score=39.66 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=53.9
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCC-CH---HHHHHHHHHHHHc
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGP-GL---SVLQSLLGACRIH 539 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~~l~~~~~~~ 539 (648)
+.+..|+.+.|++.|.+.. .+-|. ...||.-..++--.|+.++|++-+++.. ..| .- ..|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4456666666666666654 34554 5666666666666666666666555433 111 11 1222223345556
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
|+.+.|..=|+.+-+++.+-..--....|-|+.
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAA 161 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAA 161 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHH
Confidence 666666666666666655444444444444443
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.13 E-value=7.1 Score=43.64 Aligned_cols=158 Identities=14% Similarity=0.199 Sum_probs=94.1
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 006364 304 ESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHI 383 (648)
Q Consensus 304 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~ 383 (648)
+++++|+.-+..+. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+..-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-------~~~~e~~k~i~~~ya~hL-------------- 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-------KPDSEKQKVIYEAYADHL-------------- 949 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-------ccCHHHHHHHHHHHHHHH--------------
Confidence 45666666665554 223444444445666777777665 577777776666655321
Q ss_pred HHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--H
Q 006364 384 IKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT--F 461 (648)
Q Consensus 384 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 461 (648)
.+ ...|+--.-+|.++|+.++|.+.| ...|++++|+.+-.+|.. .-|... -
T Consensus 950 ~~------~~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 RE------ELMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HH------hccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 11 112233445688888888887654 556788888887777642 222221 1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
..|..-+...++.-+|-++..+...+ | .--+..|+++..+++|.++.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 34556667777777777777665432 2 233556777777888877766544
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1.3 Score=41.08 Aligned_cols=118 Identities=9% Similarity=0.074 Sum_probs=84.3
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHHcCC
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS---LLGACRIHGN 541 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~ 541 (648)
......|+..+|...|+..... .|+ ...-..|+.+|...|+.+.|..++..++.......|.. -+..+....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456778899999999888754 554 66777888999999999999999999985543333333 2333444444
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
......+ +.-..-+|+|...-..++..|...|+.++|.+.+=.+.
T Consensus 219 ~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 219 TPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4433333 33345689999999999999999999999988765554
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.03 E-value=1.4 Score=45.43 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=69.9
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHH-HHHHhhcCCHHHHHHHHhhCCC-C-----CCHHHHHHHHHHHHHcCCHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSCM-VDMLGRVGRLEEAEELVGQIPG-G-----PGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~ 543 (648)
....+.|.++++.+.+. -|+...|... ...+...|++++|.+.+++... + .....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45667777777777654 5664444333 4555667777777777775441 1 11223334555666777888
Q ss_pred HHHHHHHHHHhcCCCCchhHH-HHHHHHHhcCCc-------HHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEPAGSGSYV-LMSNLYAEKGDW-------EMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 588 (648)
+|...+.++.+...-+...|. ..+-+|...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888776655444444 444556666777 777777766543
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.92 E-value=0.082 Score=31.24 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888887764
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.87 Score=42.78 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH--HH--HhcccCcHHH
Q 006364 404 KRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSV--LT--VCGRNGMIHK 476 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~--a~~~~g~~~~ 476 (648)
-.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+ +- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34666666666666654 26667777777777777777777777776653 34554333222 22 2356677777
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPG-------LSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
|.+.-++.. .+.|. .-.-.++...+.-.|++.++.++..+-...-+ ..-|... -.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 777766654 44443 44555566666677777777777766542211 1112221 122334677777777
Q ss_pred HHHHH--hcCCCCc
Q 006364 549 ADALM--KMEPAGS 560 (648)
Q Consensus 549 ~~~~~--~~~p~~~ 560 (648)
|++-+ +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76533 3444444
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.79 E-value=0.61 Score=47.38 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
..+.|+++.|.++.++.. +...|..|......+|+++.|++++++
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334455555544444332 344455555555555555555555444
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=94.73 E-value=1.3 Score=44.17 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHh--------c-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh
Q 006364 439 YESVMNQFKEMEN-KGVRPDS-ITFLSVLTVC--------G-RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGR 506 (648)
Q Consensus 439 ~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~--------~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~ 506 (648)
.+.|+.+|.+... ..+.|+- ..|..+..++ . ...+..+|.++-+... .+.|+ ......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 5677888888872 2356664 3333222221 1 1345566777776665 45665 7777788888888
Q ss_pred cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH--HHHHHHHhcCCcHHHHHH
Q 006364 507 VGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV--LMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 507 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~~ 582 (648)
.|+++.|..+|++.. .+....+|......+.-.|+.++|.+.++++++++|....+-. ..++.|... ..++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 888999999999865 4445667888888888999999999999999999998655433 333346554 45667776
Q ss_pred HH
Q 006364 583 RK 584 (648)
Q Consensus 583 ~~ 584 (648)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 63
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.71 E-value=4.9 Score=39.71 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHhhcCCHHHHHHHHhh-CCCCCCHHHH-HHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH-IEPSPDHYSCMVDMLGRVGRLEEAEELVGQ-IPGGPGLSVL-QSLLG 534 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~ 534 (648)
...|...+.+..+..-++.|..+|-+..+. + +.|++.++++++.-++ .|+..-|..+|+. |..-||...| ...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 356777888888888899999999999776 5 6678999999998775 6888899999986 4444665554 56777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAG--SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+...++-+.|..+|+...+.-..+ ..+|..++.--..-|+...|..+-++|.+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7888899999999999776543222 56788888777778888777666666543
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.69 E-value=0.073 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888876
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.49 E-value=0.14 Score=40.63 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=52.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcC
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVG 508 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g 508 (648)
-+++..|+.+.|++.|.+.... .+-....||.-..++.-.|+.++|+.-+++..+--|-... -..|..-...|-..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3556677777777777776663 2334566777777777777777777777766654332211 223333344555666
Q ss_pred CHHHHHHHHhh
Q 006364 509 RLEEAEELVGQ 519 (648)
Q Consensus 509 ~~~~A~~~~~~ 519 (648)
+.+.|..-|+.
T Consensus 130 ~dd~AR~DFe~ 140 (175)
T KOG4555|consen 130 NDDAARADFEA 140 (175)
T ss_pred chHHHHHhHHH
Confidence 66666665554
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.35 E-value=0.62 Score=44.21 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCC--ChHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMEN-KGVRPDS---ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEP--SPDH 496 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p--~~~~ 496 (648)
+|-.+..++-+.-++.+++.+-+.-.. .|..|.. ....++-.|+...+.++++++.|+...+--. -.| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433322 2223311 2223344555555666677766666543211 112 1445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP-------GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKME------PA 558 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~ 558 (648)
|..|...|.+..++++|.-+..+.. .+.- ..+...+.-+++..|....|.+.-+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6666777777777666655443321 1111 1122334455666666666666655555432 22
Q ss_pred CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 559 GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
.......++++|...|+.+.|..-+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHH
Confidence 2334456667777777666554443
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.34 E-value=4.1 Score=37.25 Aligned_cols=193 Identities=17% Similarity=0.141 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQ-----EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666666777777777777666543 22445566666667777777788888777776433331 12222222
Q ss_pred -HhcccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-C-CHHHHHHHHHHHHH
Q 006364 467 -VCGRNGMIHKGRHLFDSMLKDYHIEP----SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GG-P-GLSVLQSLLGACRI 538 (648)
Q Consensus 467 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~-~~~~~~~l~~~~~~ 538 (648)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.... .. . ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777888888888887743 233 24444444445667778888888777654 22 2 35667777777788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++.+.+...+.......|.....+..++..+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888777666677777777766777887777765543
No 250
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.32 E-value=9.2 Score=41.27 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=31.1
Q ss_pred HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 299 MYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
.+.+.+++.....++..- ..+...-.....+....|+.++|......+-......+.....++..+.
T Consensus 108 ~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~ 174 (644)
T PRK11619 108 ELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 344455555555532221 2233334445555666666666655555554422223334444444443
No 251
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.23 E-value=2.3 Score=35.90 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=59.4
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 545 (648)
-...++.+++..++..+. -+.|. ...-..-...+.+.|++.+|..+++++... |....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 356778889999988885 45776 444444566678899999999999988743 5555556777777665544444
Q ss_pred HHHHHHHHhcCC
Q 006364 546 ERIADALMKMEP 557 (648)
Q Consensus 546 ~~~~~~~~~~~p 557 (648)
....+.+++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 555555665554
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.89 E-value=2.2 Score=44.16 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-------SEFAWTAIISALARHGDYESVMN 444 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 444 (648)
+.+.+..++..+.+.- |-+....-.-...+...|++++|.+.|+..... ....+--+.-.+....++++|.+
T Consensus 248 ~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 6677777777766542 222222333445566778888888888754421 22334445556667778888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHh-cccCcH-------HHHHHHHHHh
Q 006364 445 QFKEMENKGVRPDSITFLSVLTVC-GRNGMI-------HKGRHLFDSM 484 (648)
Q Consensus 445 ~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~m 484 (648)
.|.++.+.. .-+..+|..+..+| ...|+. ++|.++|.+.
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 888887642 23444554444444 445555 6666666655
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=93.81 E-value=0.99 Score=38.16 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=45.7
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLE 511 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 511 (648)
+.+.|++++|..+|.-+...+. -|..-|..|..+|-..+.+++|+..|..... +.++ +..+-....+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~---l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT---LLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCCCccchHHHHHHHhCCHH
Confidence 3455666666666666554221 1222334444444556666666666665532 1221 333344556666666666
Q ss_pred HHHHHHhhCCCCC
Q 006364 512 EAEELVGQIPGGP 524 (648)
Q Consensus 512 ~A~~~~~~~~~~~ 524 (648)
+|...|.....+|
T Consensus 123 ~A~~~f~~a~~~~ 135 (165)
T PRK15331 123 KARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHHhCc
Confidence 6666666554443
No 254
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.78 E-value=2.1 Score=40.99 Aligned_cols=130 Identities=12% Similarity=0.273 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh--c----CCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCC
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK--R----GSIFESQRVFNETQEK-------SEFAWTAIISALARHGD 438 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~ 438 (648)
.++....+++.+.+.|+..+..+|-+....... . .....|..+|+.|++. +-.++.+|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 445555666666666666666555443222222 1 1345677777777752 44455555444 2222
Q ss_pred ----hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCc--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 439 ----YESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGM--IHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 439 ----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
.+.+..+|+.+...|+..+. .....+|.-+..... +.++.++++.+.+. ++++...+|..+.-+-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 35667788888888877654 333344433322222 45788888888776 9998888887765443
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=8.2 Score=41.42 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=65.5
Q ss_pred ChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHH----HHHHhCCChhHHHHHhccCCCCCcchHHHHHH
Q 006364 56 DAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALI----TMYSRWGRLVEARRVFDEMPNKDSVSWNAILS 131 (648)
Q Consensus 56 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 131 (648)
..-+...-|..+.+...++.|..+-.. .+. |......++ +-+.+.|++++|...+-+-..- .--..+|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~ 405 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSEVIK 405 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHHHHH
Confidence 344556667777777777777765443 332 333333333 4444678888887766543220 11123455
Q ss_pred HHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHH
Q 006364 132 GYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHG 183 (648)
Q Consensus 132 ~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (648)
-|.... ...+-...++.+.+.|+. +...-+.||.+|.+.++.+.-.++..
T Consensus 406 kfLdaq-~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 406 KFLDAQ-RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HhcCHH-HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 555444 555555666666666654 33444566777777666665544443
No 256
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.70 E-value=0.38 Score=41.53 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=63.5
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 502 DMLGRVGRLEEAEELVGQIP--GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~--~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+-+.+.|++++|..-|.... .++. ...|..-..+..+.+.++.|..-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556677777776665543 1211 2233344456678888999999999999999988888888889999999
Q ss_pred CcHHHHHHHHHHhh
Q 006364 575 DWEMVAILRKGMKS 588 (648)
Q Consensus 575 ~~~~a~~~~~~m~~ 588 (648)
++++|++=++++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988887765
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.59 E-value=7 Score=37.30 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=9.3
Q ss_pred CCCChhHHHHHHHHHHH
Q 006364 171 HEKNLELGKQIHGVSIK 187 (648)
Q Consensus 171 ~~~~~~~a~~~~~~~~~ 187 (648)
+.|+++.|..++.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 44555555555555544
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.34 E-value=3.2 Score=34.63 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=53.1
Q ss_pred HHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCC
Q 006364 60 YSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDY 139 (648)
Q Consensus 60 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 139 (648)
...++..+...+.......+++.+.+.+ ..++..+|.++..|++.+ .......+.. ..+......+++.|.+.+ .
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~-l 84 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK-L 84 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC-c
Confidence 3456666666667777777777777766 366677888888887653 3334444442 233344455666666666 6
Q ss_pred hHHHHHHHHHH
Q 006364 140 GVEAILALIEM 150 (648)
Q Consensus 140 ~~~a~~~~~~m 150 (648)
++++.-++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.21 E-value=4.4 Score=33.84 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhC
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARH 436 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 436 (648)
.++..+...+.......+++.+... +....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 4444554455555555555544322 233455555555543
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.12 E-value=6.9 Score=35.86 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=45.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSG---SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..-|.+.|.+..|..-++.+++.-|+.+. .+..+.++|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456678899999999999999988766544 566777889999999999988776653
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.10 E-value=2.7 Score=34.74 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=57.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
....+.|++++|.+.|+.+... .+.. ...-..++.++.+.|++++|...++..++-+.-.|+ ..|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3444566677777777666654 2211 244455666666677777777776666655333333 2333334443332
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 508 GRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 508 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
...+.. +..+. ..=+..+....|...|+.+++.-|++.
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 11111 000112235677788888888888764
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.99 E-value=2.4 Score=42.58 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
..+.+.-++.-++..+ +.||-.+...++ +-..+.-+.++.++|++..+. + ...+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhh
Confidence 3445555555555555 566654443333 334455677888888776543 1 0000000 00000111 011
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 516 LVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA--GSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 516 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+..-...|-..+-..|...+++.|+.++|.+.++.+++..|. +..++..|++++...+++.++..++.+-.
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111111233344455667777778888888888887766654 44577778888888888888877777643
No 263
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.96 E-value=6 Score=42.56 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhh--
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG-LDSDPIVGSALLDMYGK-- 404 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 404 (648)
...+.-.|+++.|++.+.+ ......|.+.+...+.-+.-.. ...... ..+.... -.|.+.-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gLL~--~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGLLR--VSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT-----------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCCCC--CCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 3456778999999999887 2256677778877777665544 222111 1111111 11222557778888876
Q ss_pred -cCCHHHHHHHHhhcCC
Q 006364 405 -RGSIFESQRVFNETQE 420 (648)
Q Consensus 405 -~g~~~~A~~~~~~~~~ 420 (648)
..+..+|.+.|-.+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4577788887766553
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.87 E-value=3.1 Score=42.39 Aligned_cols=153 Identities=9% Similarity=0.033 Sum_probs=88.0
Q ss_pred HhcCChhhHHHHHHHH-HHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHH
Q 006364 231 MISMNREDAVSLFKEM-RLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDS 309 (648)
Q Consensus 231 li~g~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 309 (648)
++.++++++.+..+.= .-..+ | ....+.+++-+-+.|..+.|.++-..-. .-.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 3337777766665411 11111 2 4447788888888999998887754321 234567789999999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 310 EKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 310 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
.++.++.. +...|..|.....+.|+++-|.+.|.+... +..++-.+...| +.+.-.++.......|-
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g--~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTG--DREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT---HHHHHHHHHHHHHTT--
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhC--CHHHHHHHHHHHHHccC-
Confidence 99887765 566899999999999999999999987753 445555555555 55555555444444331
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVF 415 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~ 415 (648)
++....++.-.|++++..+++
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHH
Confidence 223333333445555544444
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=7.9 Score=41.54 Aligned_cols=139 Identities=16% Similarity=0.072 Sum_probs=60.2
Q ss_pred HHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
.+.+.|++++|...|-+...--.. ..+|.-|....+..+-..+++.+.+.|+.-...| ..|+.+|.+.++.++-.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHHHHH
Confidence 334455666665555433211000 1234444444445555555555555554433222 3455555666665555554
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
.+..- + |.. ..-....+..+.+.+-+++|..+-.+.... ..+.. -.+...+|+++|.+.++.
T Consensus 454 I~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~h--e~vl~---ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 454 ISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLATKFKKH--EWVLD---ILLEDLHNYEEALRYISS 515 (933)
T ss_pred HhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHHHhccC--HHHHH---HHHHHhcCHHHHHHHHhc
Confidence 44331 1 111 111223344445555555555554444321 11111 122344556655555443
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.72 E-value=0.22 Score=30.03 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999988888743
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.64 E-value=12 Score=37.24 Aligned_cols=149 Identities=9% Similarity=0.041 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRP---DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDH 496 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 496 (648)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|+..++...+. .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577888888888888888888888877643211 2222333344445567778888877777652 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 497 YSCMVDMLGRVGRLEEAEEL-VGQIPGGPGLSVLQSLLGACRIH------GNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...|+.+.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333334444444 788889999999999999988888888887
Q ss_pred HHhc
Q 006364 570 YAEK 573 (648)
Q Consensus 570 ~~~~ 573 (648)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7653
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.46 E-value=12 Score=36.93 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC---Cc----ccHHHHHHHHHh---cCCcHHHHHHHHHhHh-CCCCCHHHHHHHH
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR---EI----ISWNALISGYAQ---NGLSLAAVQAFFGVIK-ESKPNAYTFGSVL 362 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll 362 (648)
..++-+|....+++...++.+.+... ++ ..--...-++-+ .|+.++|++++..+.. ...+++.||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677778888888888877643 11 111122334445 7788888888888555 6667777776555
Q ss_pred HHh
Q 006364 363 NAV 365 (648)
Q Consensus 363 ~a~ 365 (648)
..+
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 443
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.45 E-value=1.6 Score=35.08 Aligned_cols=58 Identities=9% Similarity=0.240 Sum_probs=27.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
.+..+...|+-++--+++.++... -+|++.....+..||.+.|+..++.+++.++.++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344445555555555555554432 2445555555555555556655555555555544
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.33 E-value=0.76 Score=42.93 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..++..+...|+.+.+...++++.+.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777888888888877777777776654
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=8.5 Score=34.86 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhc----CCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKM----EPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
.+.-..|+..|++.++.--+. .|++..+...|...|- .|+.+++.++.
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 344445566666666654432 2445555555555553 35555555544
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=10 Score=35.60 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=93.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 510 (648)
......|++.+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888877642 222344556677778888888888888776322 0011112222345566666666
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCcHH-HHHHHHHH
Q 006364 511 EEAEELVGQIPGGP-GLSVLQSLLGACRIHGNVEMGERIADALMKM--EPAGSGSYVLMSNLYAEKGDWEM-VAILRKGM 586 (648)
Q Consensus 511 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 586 (648)
.+...+-.+.-..| |...-..+...+...|+.+.|...+=.+++. +-.+...-..|..++.-.|.-+. +...+.+|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 65555555554444 5556666777777888887777665555543 34566777777888777774443 44444444
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.12 E-value=12 Score=37.85 Aligned_cols=56 Identities=5% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVR-PDSITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 455555666666666666666543111 12234455666666666666666666554
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.00 E-value=0.36 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
+|..+...+...|+++.|...+++.+++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666666777777777777777766663
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=1.9 Score=40.61 Aligned_cols=162 Identities=10% Similarity=0.047 Sum_probs=121.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHH----HHHHHHHhhcCC
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHY----SCMVDMLGRVGR 509 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----~~l~~~~~~~g~ 509 (648)
--+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... -.|+...| ..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578899999999999875 6778888888889999999999999999888644 24554333 334455678999
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA----GSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
+++|++.-++.. .+.|.-.-.++...+...|+..++.+...+-...-.. -.-.|-..+-.|...+.++.|.+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998876 3455656677788888999999999887775443321 1335777888888999999999999
Q ss_pred HHHhhCCCccCCcee
Q 006364 584 KGMKSKGVRKEVGFS 598 (648)
Q Consensus 584 ~~m~~~~~~~~~~~s 598 (648)
++=.-..+.++.+.+
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 765444555665533
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.75 E-value=0.048 Score=46.03 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=67.3
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChH
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGV 141 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 141 (648)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|-+.| .++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~-l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG-LYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT-SHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc-hHH
Confidence 45677778888999999999999887777889999999999999999999999985443 44466777777888 888
Q ss_pred HHHHHHHHHH
Q 006364 142 EAILALIEMM 151 (648)
Q Consensus 142 ~a~~~~~~m~ 151 (648)
++.-++.++-
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8887777653
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.72 E-value=18 Score=37.43 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=126.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVR--PDSITFLSVL 465 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll 465 (648)
+..+|..-++.-.+.|+.+.+.-.|+...-| -...|--.+.-.-..|+.+-|-.++....+-.++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888888899999999999888765 2345655555555568888888887776654333 3333333332
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH---HHHhhCC-CCCCHHHHHHHH----H-H
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE---ELVGQIP-GGPGLSVLQSLL----G-A 535 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~----~-~ 535 (648)
+...|+.+.|..+++...+++ |+ ...-..-+....+.|..+.+. +++.... .+-+..+...+. . .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 466789999999999998763 76 444444566777889988888 5555433 233333332222 2 2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+...++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 455788999999999999999999999999999988776
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.39 E-value=0.4 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.35 E-value=10 Score=33.73 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 006364 405 RGSIFESQRVFNETQ--EK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
.|-..-|.-=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444322 23 3457888888888889999999999888774 332 22222222345567888888876
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 006364 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG- 559 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~- 559 (648)
|-..-+.-.-.|=...|-.++. +.-+..+|..-+.+--.+.|...|...+-.+.- |... -+.+++++.+-..++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 6665443223333444444433 344666666543332224555667665544322 2221 133444444333332
Q ss_pred ------chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 ------SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+|.-|+.-|...|+.++|..+++....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 46899999999999999999999986543
No 280
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.15 E-value=8.7 Score=35.75 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++.....|...|.+.+|.++-++++.++|-+...+..|.++|+..|+--+|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445678999999999999999999999999999999999999999888888888774
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.02 E-value=2.9 Score=40.02 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcC--CCC----hhHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhCCChH
Q 006364 141 VEAILALIEMMRKGLRLDHVSFTSAASACGH--EKN----LELGKQIHGVSIKMGY---GTHVSVGNVLMSTYSKCEVTG 211 (648)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 211 (648)
.+.+.+++.|.+.|.+-+..+|-+..-.... ..+ ...++.+|..|++... .++-..+.+|+.. ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4555667777888888777777653333322 222 3456677777776532 2233333333322 222221
Q ss_pred HHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcC-Cc--hHHHHHHHHHHHHhcCC
Q 006364 212 DANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIG-NL--VKEGRMIHGLCIKTNFL 287 (648)
Q Consensus 212 ~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~-~~--~~~a~~~~~~~~~~~~~ 287 (648)
. + .+++...|+.+...|+..+.. .+.+-+-+++.. .. ..++..+++.+.+.|++
T Consensus 157 ~---l-------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 157 E---L-------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred H---H-------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 1 1 244556677777777665333 333333333222 22 34566777777777777
Q ss_pred CCchhHHHHH
Q 006364 288 SEPSVCNCLI 297 (648)
Q Consensus 288 ~~~~~~~~li 297 (648)
+....|..+.
T Consensus 215 ik~~~yp~lG 224 (297)
T PF13170_consen 215 IKYMHYPTLG 224 (297)
T ss_pred cccccccHHH
Confidence 7776665543
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.98 E-value=15 Score=35.06 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHH---HhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISAL---ARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
.-+..+.+.++.+.+.+++..|... ....+...+..+ .. .....|...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3344444455555665555555432 122333333333 22 2234555555555544444443
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.85 E-value=16 Score=35.21 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHhcCCcHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a 579 (648)
..+..++.+|...|.-++-
T Consensus 332 K~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 3566778888777765543
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.75 E-value=13 Score=33.83 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHH-HHHhCCChHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKV-GLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIIS-ALARHGDYESVMNQF 446 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~~~~~g~~~~A~~~~ 446 (648)
....+...+...... ........+......+...+++..+.+.+...... +......... .+...|+++.|...|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 153 (291)
T COG0457 74 RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153 (291)
T ss_pred cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444443333321 23334445555666666667777777777766542 2223333334 788899999999999
Q ss_pred HHHHHCCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 447 KEMENKGVRP----DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 447 ~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
++... ..| ....+......+...++.+.+...+...... .|+ ...+..+...+...+++++|...+...
T Consensus 154 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 154 EKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99855 333 2344444444467788999999999988644 443 677888888899999999999988876
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 521 P-GGPG-LSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 521 ~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
. ..|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5 2343 455666666666777899999999999988887
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.74 E-value=1.8 Score=36.49 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.++.+.++.++.-+.-+.|..+..-..-++++...|+|.+|.++++.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.50 E-value=6.1 Score=34.56 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC----hHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS----PDH 496 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~ 496 (648)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...|++..+.....+......- .++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3444555556666666666666665554333332 33445555555566666665555554322111 011 112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
|..+ .+...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234567777766665544
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.47 E-value=0.7 Score=29.31 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
|..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.42 E-value=1.8 Score=35.75 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
.++.+.++.+++.+.-+.|+.+..-..-+.++...|+|++|.++++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666666666666666666666666666666666666555443
No 289
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=89.97 E-value=0.31 Score=39.01 Aligned_cols=28 Identities=57% Similarity=1.024 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCceEEEecCCCCCcChHHHHHHHH
Q 006364 596 GFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAE 629 (648)
Q Consensus 596 ~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~ 629 (648)
||||+++ |.|++||.+||+...+...+.
T Consensus 2 ~~~w~~~------h~F~sgd~shp~~~~~~~~~~ 29 (116)
T PF14432_consen 2 GCSWIEV------HSFVSGDRSHPQSELINKMKE 29 (116)
T ss_pred CCCccce------EEEEeCCCcCccHHHHHHHHH
Confidence 7899864 899999999999876666553
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.94 E-value=29 Score=36.68 Aligned_cols=124 Identities=10% Similarity=0.222 Sum_probs=57.0
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHH----HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 006364 399 LDMYGKRGSIFESQRVFNETQEKSE---FAWTAIISAL----ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 471 (648)
|..+.+.|+.-+|.+++.+|.++.. +.|-.+-..| .-..+..+++.-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 4556677777777777776654211 1111111111 111223344444444444444333221 1223
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPGLSVLQSLL 533 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~ 533 (648)
|...++-++.+..-+ -....||..|..--...|..+.|++.--.+. .-|...+|..|.
T Consensus 1003 ~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 334444444443321 1235566666666777888888877533332 124455555444
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.76 E-value=59 Score=39.99 Aligned_cols=308 Identities=12% Similarity=0.042 Sum_probs=169.2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCChHHHHHHHhh-cCCCCcccHHHHHHHHHhcCCc
Q 006364 261 LIHAISIGNLVKEGRMIHGLCIKTNF--LSEPSVCNCLITMYARFESMQDSEKVFDE-LSCREIISWNALISGYAQNGLS 337 (648)
Q Consensus 261 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 337 (648)
+..+-.+.+.+.+|...++.-..... .-....+..+...|+..+++|....+... ...+ +...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 33455566777777777766311000 11122344555588888888887776653 2222 334456667788999
Q ss_pred HHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 338 LAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNE 417 (648)
Q Consensus 338 ~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 417 (648)
..|...|+.+.+..++...+++.++..-...+ .++...-..+-.....-+-....++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~--~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQ--HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCCCccccchhhHHHhhhccc--chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999998855666777777766655555 555444433322222111122233334444567777777777665
Q ss_pred cCCCChhHHHHH--HHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHH----------
Q 006364 418 TQEKSEFAWTAI--ISALARHGD--YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDS---------- 483 (648)
Q Consensus 418 ~~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---------- 483 (648)
..+..+|.+. +..+.+..+ .-.-.+..+.+++.-+.| +.+|+..|.+..+.++.-.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655 223322222 112223444444321211 2233333332232222211
Q ss_pred hHHhcCCCCCh------HHHHHHHHHHhhcCCHHHHHHHH---hh------CC---CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 484 MLKDYHIEPSP------DHYSCMVDMLGRVGRLEEAEELV---GQ------IP---GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 484 m~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~---~~------~~---~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
.....+..|+. ..|..- +.+.+....+.+-+ ++ |. ..--..+|......++..|.++.|
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~R---l~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNR---LERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHhhccCccccccccchhHHHH---HHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11112344431 112111 11222222222211 11 11 123456899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
..+.-.+.+.. -+..+.-.+..+...|+-..|..+++.-.+.
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99888877766 5578999999999999999999999876643
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.39 E-value=13 Score=31.92 Aligned_cols=134 Identities=9% Similarity=0.062 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC--ChHHHHHHHhhcC
Q 006364 240 VSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFE--SMQDSEKVFDELS 317 (648)
Q Consensus 240 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~ 317 (648)
++.++.+...|+.|+...+..+++.+.+.|.+..-. .++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 466777788899999999999999999999866544 4455666666665554443333221 1233455555543
Q ss_pred CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh
Q 006364 318 CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV 386 (648)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~ 386 (648)
..+..++..+...|++-+|+++.+....-..+ ....++.+..+.+ +...-..+++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~--D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSN--DDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 24667788899999999999998876441112 2244566666666 555555555555543
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.20 E-value=10 Score=31.57 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGP-GLSVLQSLLGACRI 538 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 538 (648)
..++.+++..+++.|. -+.|+ ...-..-+..+.+.|++++|.+++++....+ ....-..|+..|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4678888888888875 45665 3333334556678888888888888877443 33333444444443
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=4.2 Score=38.09 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=71.1
Q ss_pred hcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC---------CCchhhHHHhc-CChhhHHHHHHHHHHCCCCCChhh
Q 006364 188 MGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD---------RNVISWTTMIS-MNREDAVSLFKEMRLDGVCPNDVT 257 (648)
Q Consensus 188 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~-g~~~~a~~~~~~m~~~g~~p~~~~ 257 (648)
.|.+....+...++..-....+++++...+-.+.. ...++|-.++. -++++++.++..=.+.|+-||.++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 34455566666667666667777777776655533 12334444333 678888888888888999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 006364 258 FIGLIHAISIGNLVKEGRMIHGLCIKTN 285 (648)
Q Consensus 258 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 285 (648)
++.+|+.+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999888877776654
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.85 E-value=1.3 Score=41.80 Aligned_cols=95 Identities=13% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 509 (648)
+-|.++|++++|+++|.+-.. +.| |.+++..-..||.+...+..|..-....+.- -...+.+|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR-- 171 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRR-- 171 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHH--
Confidence 345666666666666655444 334 5555555555555555554444333332210 01123333333
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 510 LEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 510 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
+.+-...|+..+|.+=++..++++|.+-.
T Consensus 172 -----------------------~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 172 -----------------------MQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred -----------------------HHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 33334556777778888888888887543
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.63 E-value=0.57 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 490 IEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 490 ~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
+.|+ ...|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3665 777777777777777777775
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.61 E-value=4.5 Score=37.97 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----hcCCCCChHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK----DYHIEPSPDHYSCMV 501 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~l~ 501 (648)
+..++..+...|+++.+...++++... -+-|...|..++.+|...|+...|+..|+.+.+ ..|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 334444444445555555555554443 123444455555555555555555554444432 345556555544443
Q ss_pred HH
Q 006364 502 DM 503 (648)
Q Consensus 502 ~~ 503 (648)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.40 E-value=2.5 Score=39.54 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=74.7
Q ss_pred hCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-------CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCC
Q 006364 86 FGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-------KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLD 158 (648)
Q Consensus 86 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~ 158 (648)
.|.+....+...++..-....+++.+...+-...+ ++. +--+.++-+.+. ++++++.++..=.+.|+.||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky--~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc--ChHHHHHHHhCcchhccccc
Confidence 35555666667777777767788888887766654 222 222334444333 67799999999999999999
Q ss_pred hhhHHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 006364 159 HVSFTSAASACGHEKNLELGKQIHGVSIKMG 189 (648)
Q Consensus 159 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 189 (648)
.+|+..+|..+.+.+++..|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776654
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.32 E-value=15 Score=31.45 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 276 MIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
++...+.+.+++|+...+..+++.+.+.|+......+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444555667777777777777777777665554443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.21 E-value=1.1 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777776665
No 301
>PRK10941 hypothetical protein; Provisional
Probab=88.21 E-value=2.9 Score=39.26 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCce
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGL 608 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~ 608 (648)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~------------------- 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ------------------- 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-------------------
Confidence 4666778889999999999999999999999999999999999999999998877654432
Q ss_pred EEEecCCCCCcChHHHHHHHHHHHHHh
Q 006364 609 HGFSSGDNTHPRSEEIYRMAECLGSEM 635 (648)
Q Consensus 609 ~~f~~~~~~~~~~~~i~~~l~~l~~~~ 635 (648)
....|....|...++.|....
T Consensus 245 ------~P~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 245 ------CPEDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred ------CCCchhHHHHHHHHHHHhhcC
Confidence 134566677777777766554
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.68 E-value=0.94 Score=26.50 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5688999999999999999999987654
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.59 E-value=15 Score=33.16 Aligned_cols=26 Identities=4% Similarity=-0.128 Sum_probs=17.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
...+++.+|..+|++.....-+++-.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHH
Confidence 45677888888888877655554433
No 304
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.57 E-value=23 Score=32.59 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=19.3
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
|.+.|.+..|..-++.|.+.+.-.+. ...+-.|..+|.+.|-.++|.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 34444444444444444443222222 233333444444444444433
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.35 E-value=0.85 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888887764
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.30 E-value=23 Score=32.26 Aligned_cols=135 Identities=9% Similarity=0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
.|.--..+|....++++|...+.+..+. ...|...|.. ...++.|.-+.+++.+ -|. +..|+--..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k----lsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK----LSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHH
Confidence 4555555666666666666666555431 2222222211 1223334444444421 122 3344444555
Q ss_pred HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCcH
Q 006364 504 LGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~ 577 (648)
|...|..+-|-..+++.. -....-+.+.|.++|++...+-..+ ...|-..+++|.+..+++
T Consensus 101 Y~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 555665555444443321 0112233444555555544332111 123444555666666666
Q ss_pred HHHHHHH
Q 006364 578 MVAILRK 584 (648)
Q Consensus 578 ~a~~~~~ 584 (648)
+|...+.
T Consensus 168 Eaa~a~l 174 (308)
T KOG1585|consen 168 EAATAFL 174 (308)
T ss_pred HHHHHHH
Confidence 6655554
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.91 E-value=24 Score=34.97 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEP----AGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
....+|..+...+++.|+++.|..++.++....+ ..+.....-++.+...|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999988652 2567788889999999999999999888776333
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.71 E-value=50 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhH
Q 006364 195 SVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWT 229 (648)
Q Consensus 195 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 229 (648)
.+...+|+.+...|++++|-...-.|...+..-|.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe 427 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWE 427 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHH
Confidence 34556677777777777777777666665555443
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.67 E-value=21 Score=31.26 Aligned_cols=115 Identities=5% Similarity=0.004 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcCCHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFL--SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHY-----SCMVDMLGRVGRLEEA 513 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 513 (648)
+.....+++....-+-...++. .+...+...|++++|...++..... |....+ -.|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666532122222222 3345678889999999998876532 323333 3345667788999999
Q ss_pred HHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 514 EELVGQIPGGPGLS-VLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 514 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+..++....+.-.. ....-+..+...|+-++|...|++.++.++.+
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99999876432222 22334567889999999999999999887443
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.36 E-value=11 Score=28.54 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
+.-++.+-++.+....+.|++....+.|+||.+.+|+..|.++|+....+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4445666667777777899999999999999999999999999998865523 24556766654
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.30 E-value=8.3 Score=33.73 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---CCHHHHHH
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEKS------EFAWTAIISALARHGDYESVMNQFKEMENKGVR---PDSITFLS 463 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ 463 (648)
..+..+.+.|.+.|+.+.|.+.|..+.+.. +..+-.+|......+++..+.....+....-.. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456789999999999999999999988653 335677888888899999999888887653222 22222222
Q ss_pred HHH--HhcccCcHHHHHHHHHHhHHh
Q 006364 464 VLT--VCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 464 ll~--a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+.. ++...|++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 235578999999888776544
No 312
>PRK09687 putative lyase; Provisional
Probab=86.23 E-value=32 Score=32.83 Aligned_cols=17 Identities=12% Similarity=-0.146 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHhhcCC
Q 006364 391 DPIVGSALLDMYGKRGS 407 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~ 407 (648)
+..+-...+.++++.|+
T Consensus 141 ~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 141 STNVRFAVAFALSVIND 157 (280)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 33333444444444444
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.19 E-value=13 Score=31.78 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=68.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHhhcC
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD-HYSCM--VDMLGRVG 508 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--~~~~~~~g 508 (648)
+++.++.++|+.-|.++.+-|...=++ ............|+...|...|+++-.+ .-.|.+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 345666777777777777655432211 1111222345667777777777777554 3333321 11111 23455677
Q ss_pred CHHHHHHHHhhCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 509 RLEEAEELVGQIPGG--P-GLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 509 ~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
.+++.....+.+... | ....-.+|.-+-.+.|++..|.+.|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777777777665522 2 233345566667777888888888877765
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.71 E-value=56 Score=35.21 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=89.9
Q ss_pred hhcccChhhHhHHHHHHHHhCCCC---CcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHH
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDS---EVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEA 143 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a 143 (648)
+.+.+.+++|...-.... |..| ...++..+|+.+.-.|++++|-.+.-.|...+..-|---+..++..+ +..
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~-~l~-- 440 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELD-QLT-- 440 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccc-ccc--
Confidence 344455666655444322 3334 34678888999999999999999988888888888888888888777 332
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHh------------cCC-------CCcchHHHHHHHH
Q 006364 144 ILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKM------------GYG-------THVSVGNVLMSTY 204 (648)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~-------~~~~~~~~li~~~ 204 (648)
.++.-+.......+...|..+|-.+.. .+.. .+++..... ..+ -+......|...|
T Consensus 441 -~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 441 -DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred -hhhccCCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 222222222223444556666655544 1111 111111110 001 1223345588999
Q ss_pred HhCCChHHHHHHHhcCCCCCch
Q 006364 205 SKCEVTGDANKVFRRMHDRNVI 226 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~ 226 (648)
...+++++|..++-....+++.
T Consensus 516 l~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHccChHHHHHHHHhccChHHH
Confidence 9999999999998888765543
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.67 E-value=6.1 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
+...-++.+....+.|++....+.|.||.+.+++..|.++|+....+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4455556666667889999999999999999999999999999876633 334477777653
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.46 E-value=1.9 Score=24.85 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=11.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 534 GACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
.++...|+.+.|.+.++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444444444444444444
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.86 E-value=4.2 Score=27.01 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
.+.-++.+.|+++.|.+..+.+++++|++..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566789999999999999999999999865533
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.73 E-value=2 Score=25.08 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999987654
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.40 E-value=8.2 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 520 IPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
+-.-|++.+..+.+.+|++.+|+..|.++++-+.....+....|..+.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 335689999999999999999999999999998876555544666553
No 320
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.02 E-value=7.6 Score=29.38 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 520 IPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+-.-|++.+..+-+.+|++.+|+..|.++++-.......+...|..+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 33568889999999999999999999999998875444344455544
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.00 E-value=1.4 Score=25.45 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999988753
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.71 E-value=9.2 Score=38.15 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=44.0
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
+...|+++.+...+.... ......+...++......|+++.|....+.++..+-+++++...-+..-...|-++++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 344555555555554433 123334455555555556666666666666655554444444333333444455666666
Q ss_pred HHHHHhh
Q 006364 582 LRKGMKS 588 (648)
Q Consensus 582 ~~~~m~~ 588 (648)
.|+++..
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 6665543
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.57 E-value=1.2e+02 Score=37.45 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHhc-CCCCCchhhHHHhc----CChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCc
Q 006364 197 GNVLMSTYSKCEVTGDANKVFRR-MHDRNVISWTTMIS----MNREDAVSLFKEMRLDGVCPN-DVTFIGLIHAISIGNL 270 (648)
Q Consensus 197 ~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~----g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 270 (648)
|-.+...|+.-+++|...-+... ...++. ++-++. |++..|...|+.+.+. .|+ ..+++.++..-...+.
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCccH--HHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccc
Confidence 34445577777777776666552 333332 222222 8888888888888765 344 5677777776666666
Q ss_pred hHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHH
Q 006364 271 VKEGRMIHGLCIKTNFLSEPSV-CNCLITMYARFESMQDSEKVFDELSCREIISWNAL 327 (648)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 327 (648)
+....-..+...... .+.... ++.=+.+--+.+++|...+... .++..+|...
T Consensus 1499 l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 666555433332221 222222 2223344466777777776665 5666677665
No 324
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.41 E-value=3.9 Score=36.15 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
.+.|+ +..||.|.--+...|+++.|.+.|+.
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 34444 44455554444555555555555544
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.12 E-value=73 Score=34.47 Aligned_cols=64 Identities=27% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHhCCChhHHHHHhccCC---CCCcchHHHHHHHHHcCCC------ChHHHHHHHHHHHHCCCCCChh
Q 006364 97 ALITMYSRWGRLVEARRVFDEMP---NKDSVSWNAILSGYTQDGD------YGVEAILALIEMMRKGLRLDHV 160 (648)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~------~~~~a~~~~~~m~~~g~~p~~~ 160 (648)
++|--+.|+|++++|.++..+.. ++....+-..+..|+...+ .-++...-|+...+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 35556779999999999983332 2344567777777776531 2234555566655544333543
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.07 E-value=74 Score=34.49 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=108.9
Q ss_pred CCcchHHHHHHhhccCChHHHHHHHHHh-CCCCCC--hhhHHHHHHHhh-cccChhhHhHHHHHHHHhCCCCCcc-----
Q 006364 23 PDIVSWNTVLSGFEKSDDALSFALRMNL-IGVVFD--AVTYSTALSFCL-DHEGFLFGLQLHSLIVKFGLDSEVY----- 93 (648)
Q Consensus 23 p~~~~~~~ll~~~~~~~~a~~~~~~m~~-~g~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~----- 93 (648)
.++..|..||+ -|+..++...+ ..++|. ..++-.+...+. ...+++.|+..+++.+...-.++..
T Consensus 28 ~~l~~Y~kLI~------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 28 EQLKQYYKLIA------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred hhHHHHHHHHH------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 45566777777 56667777663 334443 334455555554 6778999999999776554333221
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC----CCcchH----HHH-HHHHHcCCCChHHHHHHHHHHHHCC---CCCChhh
Q 006364 94 VGNALITMYSRWGRLVEARRVFDEMPN----KDSVSW----NAI-LSGYTQDGDYGVEAILALIEMMRKG---LRLDHVS 161 (648)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~----~~l-i~~~~~~g~~~~~a~~~~~~m~~~g---~~p~~~t 161 (648)
....++..|.+.+... |.+.+++..+ .....| ..+ +.-+...+ ++..|++.++.+...- ..|-...
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 2334567777776666 7777766443 111222 222 22222346 8888999998875532 3444555
Q ss_pred HHHHHHHhc--CCCChhHHHHHHHHHHHhcC---------CCCcchHHHHHHHH--HhCCChHHHHHHHhcCC
Q 006364 162 FTSAASACG--HEKNLELGKQIHGVSIKMGY---------GTHVSVGNVLMSTY--SKCEVTGDANKVFRRMH 221 (648)
Q Consensus 162 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~ 221 (648)
+..++.+.. ..+..+.+.+....+..... .|...++..+++.+ ...|++..+...++.+.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666544 44445566666665543222 23445566666554 45677667766665554
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.07 E-value=3.5 Score=29.80 Aligned_cols=47 Identities=6% Similarity=0.054 Sum_probs=30.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEEL 516 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 516 (648)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777666333334 45667777777777777776654
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.03 E-value=13 Score=32.06 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
+++|..-+++++.++|+...++.+++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777888888999999999999999887653
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.89 E-value=2.3 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888876643
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.73 E-value=22 Score=31.20 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDS-----ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
+-+..+|++++|..-|.+.++. ++|.. ..|..-..++.+.+.++.|+.-....+ .+.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHH
Confidence 3466677777777777777663 22222 223333344555666666655554443 33444 33333334445
Q ss_pred hhcCCHHHHHHHHhhC
Q 006364 505 GRVGRLEEAEELVGQI 520 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~ 520 (648)
.+...+++|+.-++++
T Consensus 179 ek~ek~eealeDyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKI 194 (271)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 5555555555444443
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.53 E-value=28 Score=36.18 Aligned_cols=147 Identities=20% Similarity=0.099 Sum_probs=97.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHH
Q 006364 404 KRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
-.|+++.|..++-.++++ .-+.++.-+-+.|-.++|++ +.+|.. -|... .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 346677776666555532 34455666667777777765 444442 23333 35688888887765
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 483 SMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 483 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
+. -+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 44 235668888999999999999988887754 266677777777887766666666665555443
Q ss_pred HHHHHHHHHhcCCcHHHHHHHH
Q 006364 563 YVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
-..+|...|+.++..+++.
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHH
Confidence 3346777888888888774
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.98 E-value=76 Score=33.86 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHhhCCCcc
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK-GDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~ 593 (648)
.+.+.|...++++.+.++. .+...++..+.-. ++++.+.-.+..+.+.|.+-
T Consensus 378 r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred CCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 3566666666666666622 2222222222221 66666666555555555443
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.45 E-value=1 Score=37.88 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHH
Q 006364 260 GLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLA 339 (648)
Q Consensus 260 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (648)
.+++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777777777788887776667788889999999999888888888874332 334556666777777777
Q ss_pred HHHHHHHhH
Q 006364 340 AVQAFFGVI 348 (648)
Q Consensus 340 A~~~~~~m~ 348 (648)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776654
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.39 E-value=2.9 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
..+...+...|+++.|...++..++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444444444444444444433
No 335
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.15 E-value=13 Score=30.84 Aligned_cols=82 Identities=6% Similarity=0.144 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC---------CCcchHHHHHHHHHcCCCC-hHHHHHHHHHHHHCCCCCChhhHH
Q 006364 94 VGNALITMYSRWGRLVEARRVFDEMPN---------KDSVSWNAILSGYTQDGDY-GVEAILALIEMMRKGLRLDHVSFT 163 (648)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~-~~~a~~~~~~m~~~g~~p~~~t~~ 163 (648)
..|.++.-....+++....++++.+.. .+..+|++++.+.++.. . --.+..+|..|.+.+.+++..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs-SaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS-SAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh-HHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345555555555666665555555532 46678999999997776 4 456778888888888899999999
Q ss_pred HHHHHhcCCCChh
Q 006364 164 SAASACGHEKNLE 176 (648)
Q Consensus 164 ~ll~~~~~~~~~~ 176 (648)
.++++|.+....+
T Consensus 120 ~li~~~l~g~~~~ 132 (145)
T PF13762_consen 120 CLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHcCCCCc
Confidence 9999887654333
No 336
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=80.30 E-value=63 Score=31.79 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=129.0
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHH--HHHHHCCCCCCHHHHHHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQF--KEMENKGVRPDSITFLSVL 465 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll 465 (648)
...+..+...+++.|...++++.--+... ...-++|+...|+.-. +-|.-..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 34455566667777777777766544322 2234577777776532 2233333456666655555
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCC--C-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH-----------
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEP--S-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQS----------- 531 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 531 (648)
..+. ...+. .|-. . ...-..|...+...|+..+|..++.+.+. .||++
T Consensus 114 ~tLr-------------~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 114 ETLR-------------TVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFIL 175 (439)
T ss_pred HHHH-------------HhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHH
Confidence 4431 11110 1111 1 23334567778889999999999888762 22322
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEc
Q 006364 532 -LLGACRIHGNVEMGERIADALMKMEPAG-------SGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVG 603 (648)
Q Consensus 532 -l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 603 (648)
=+..|...+|+-.|.-+.++.....-++ ...|..+.......+.+-++.+.++..-+.|..+....-|+++-
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 2567888999999988888876543222 23688899999899999999999999888877777666688776
Q ss_pred CCCceEEEecCCCCCcChHHHHHHHH
Q 006364 604 DIDGLHGFSSGDNTHPRSEEIYRMAE 629 (648)
Q Consensus 604 ~~~~~~~f~~~~~~~~~~~~i~~~l~ 629 (648)
..+-.|+.-.+..+...++.....
T Consensus 256 --~~iv~f~~LAp~dneQsdll~~is 279 (439)
T KOG1498|consen 256 --RSIVSFCVLAPHDNEQSDLLARIS 279 (439)
T ss_pred --hhheeEEeecCCCcHHHHHHHHHh
Confidence 445556655454454444444433
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.15 E-value=4.4 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
.+++.|...+...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777888888888888888877765
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.95 E-value=12 Score=37.46 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006364 436 HGDYESVMN-QFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 436 ~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 514 (648)
.|+...|-+ ++.-+....-.|+.+-..+.+ +.+.|+++.+.+.+..... -+.....+..+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 344444433 334444433345544443333 4566777777766665532 23334566666777777777777777
Q ss_pred HHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 515 ELVGQIPGG--PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 515 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
.+-.-|... .++.+.......-...|-++++...++++..++|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 766655421 23333333333444556666677777777766654
No 339
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.90 E-value=82 Score=32.91 Aligned_cols=173 Identities=8% Similarity=0.031 Sum_probs=89.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhcCCcHHHHHHHHHhHh---CCCCCHHHHHHHH
Q 006364 289 EPSVCNCLITMYARFESMQDSEKVFDELSCRE---IISWNALISGYAQNGLSLAAVQAFFGVIK---ESKPNAYTFGSVL 362 (648)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~p~~~~~~~ll 362 (648)
+..+|..-++--.+.|+.+.+.-+|++..-+- ...|--.+.-....|+.+-|-.++....+ ...|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34456667777777888888888888775442 23455555555555777777777766655 2233333333333
Q ss_pred HHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH---HHHhhcCC--CChhHHHHHHH-----H
Q 006364 363 NAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ---RVFNETQE--KSEFAWTAIIS-----A 432 (648)
Q Consensus 363 ~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~-----~ 432 (648)
. -..| +...|..+++.+...- +.-..+-..-+..-.+.|+.+.+. +++....+ .+....+.+.- -
T Consensus 376 ~--e~~~--n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 E--ESNG--NFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred H--Hhhc--cHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 3 2234 6677777777766544 323333333444555566666655 33332221 12222222211 1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
+.-.++.+.|..++.+|.+. ++++..-|..++.-
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 22245556666666666553 34444444444433
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.58 E-value=13 Score=32.84 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=52.2
Q ss_pred hccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHh---CCCCCcchHHHHHHHHHhCCChh
Q 006364 35 FEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF---GLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 35 ~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
..+.| .|+..|-.+...+.--++.....|...|. ..+..++.+++-+..+. +-.+|+.++.+|.+.|.+.|+.+
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34544 78888888777776655555555555444 56777888877777764 22567778888888888888877
Q ss_pred HHH
Q 006364 110 EAR 112 (648)
Q Consensus 110 ~A~ 112 (648)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
No 341
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.35 E-value=23 Score=27.12 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=58.2
Q ss_pred ChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHH
Q 006364 72 GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMM 151 (648)
Q Consensus 72 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~ 151 (648)
.-++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+.-||...|-++-.. +.| ..+.+..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlG-l~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLG-LGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhc-cHHHHHHHHHHHH
Confidence 345666666666554421 223333344567789999999999999999999999887655 445 5556666677777
Q ss_pred HCCCCCChhhHH
Q 006364 152 RKGLRLDHVSFT 163 (648)
Q Consensus 152 ~~g~~p~~~t~~ 163 (648)
..| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 665 45555554
No 342
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.44 E-value=1.2 Score=42.16 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=70.5
Q ss_pred hcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHH
Q 006364 506 RVGRLEEAEELVGQIP-G-GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 506 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
..|.+++|++.+.... . +|....+..=.+++.+.+....|++=+..+++++|+....|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4566777777666544 2 2344444445566677777788888888888899998888888888888899999999988
Q ss_pred HHHhhCCCccCCceeEEEEc
Q 006364 584 KGMKSKGVRKEVGFSWADVG 603 (648)
Q Consensus 584 ~~m~~~~~~~~~~~s~~~~~ 603 (648)
....+.++....+...-++.
T Consensus 206 ~~a~kld~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 206 ALACKLDYDEANSATLKEVF 225 (377)
T ss_pred HHHHhccccHHHHHHHHHhc
Confidence 88888777766544433443
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.37 E-value=53 Score=29.84 Aligned_cols=68 Identities=15% Similarity=0.294 Sum_probs=38.0
Q ss_pred HHhhcCCHHHHHHHHhhCC---CCCCHHHHHH---HH--HHHHHc-CCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP---GGPGLSVLQS---LL--GACRIH-GNVEMGERIADALMKMEPAGS--GSYVLMSNLY 570 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~---l~--~~~~~~-g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~ 570 (648)
.-+..+++.+|.++|++.. ...+..-|.. ++ ..|.-. .|.-.+..++++..+++|.-. .-+..|..+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 3455677778888877654 1112222221 22 233333 677778888999999988643 3344444443
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.94 E-value=52 Score=29.53 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCM 500 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 500 (648)
|.+..++.+.+.+...+|+...++-++. -+-|..+-..++.-++-.|++++|..-++-.- .+.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 4456677888889999999988877764 23345566677888888999999988777663 33443 5566666
Q ss_pred HHHHhhcCCHHHHH-HHHhhC--C---CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCc
Q 006364 501 VDMLGRVGRLEEAE-ELVGQI--P---GGPGLSVLQSLLGACRIH--GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 501 ~~~~~~~g~~~~A~-~~~~~~--~---~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~p~~~ 560 (648)
|.+ +.+. ++|..- | ..|.+.-...|+.+..-+ |.-+.....-+..++..|...
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 654 2222 234321 1 224444444455444333 344555666666676666543
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.90 E-value=14 Score=32.57 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCcHHH
Q 006364 506 RVGRLEEAEELVGQIPGGP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEP----AGSGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 506 ~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a 579 (648)
+.|+ ++|.+.|-.+...| +.......+..+....|.+.+.+++-+++++.+ .|+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455 66777666665443 233344445556667888899999888888753 3588899999999999998876
Q ss_pred H
Q 006364 580 A 580 (648)
Q Consensus 580 ~ 580 (648)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
No 346
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.00 E-value=58 Score=32.38 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=49.6
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSL---LGACRIHGNVEMGERIADALMKMEPA-GSGSYVLMSNLYA-EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 588 (648)
|...|.++ +..+.+.|-+..|.+..+.+..++|. ||-.-...++.|+ ++++++-.+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34445444 56778899999999999999999998 8888778888776 55677777888776554
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.71 E-value=92 Score=31.74 Aligned_cols=162 Identities=10% Similarity=-0.057 Sum_probs=70.7
Q ss_pred HHHHHHhCCCCCChhh--HHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 44 FALRMNLIGVVFDAVT--YSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 44 ~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
+++.+.+.|..|+... -.+.|..++..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+.+..+++.-.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence 3444555565554432 223344444555543 334444555444321 12233445556777777777766543
Q ss_pred CC----CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHhcCCCChhHHHHHHHHHHHhcCCCC
Q 006364 120 NK----DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSF--TSAASACGHEKNLELGKQIHGVSIKMGYGTH 193 (648)
Q Consensus 120 ~~----~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 193 (648)
.. +..-++. +...+..| .. ++++.+.+.|..|+.... .+.+...+..|+.+.+.. +.+.|..++
T Consensus 93 ~~~~~~~~~g~tp-L~~A~~~~-~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~ 162 (413)
T PHA02875 93 FADDVFYKDGMTP-LHLATILK-KL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLD 162 (413)
T ss_pred cccccccCCCCCH-HHHHHHhC-CH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCC
Confidence 21 1111222 22333444 33 344555556665543221 123333444555544333 334444332
Q ss_pred cc--hHHHHHHHHHhCCChHHHHHHHhc
Q 006364 194 VS--VGNVLMSTYSKCEVTGDANKVFRR 219 (648)
Q Consensus 194 ~~--~~~~li~~~~~~g~~~~A~~~~~~ 219 (648)
.. .....+...+..|+.+-+.-+++.
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 21 112233334445555544444443
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.66 E-value=69 Score=30.26 Aligned_cols=113 Identities=10% Similarity=0.088 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006364 438 DYESVMNQFKEMEN-KGVRPDSITFLSVLTVCGR--NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 438 ~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 514 (648)
.+.+|+.+|+.... ..+--|......+++.... ......-.++.+-+...++-.++..+....++.++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663211 2244455555566655533 11233334455555555666777777777788888888888877
Q ss_pred HHHhhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006364 515 ELVGQIP----GGPGLSVLQSLLGACRIHGNVEMGERIAD 550 (648)
Q Consensus 515 ~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (648)
++++... ...|...|..++..-...||......+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 7776543 22455667777777777777554444433
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.58 E-value=1.3e+02 Score=33.31 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=101.3
Q ss_pred hcCCHHHHHHHHhhcC----CCCh-------hHHHHHHHH-HHhCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 006364 404 KRGSIFESQRVFNETQ----EKSE-------FAWTAIISA-LARHGDYESVMNQFKEMENK----GVRPDSITFLSVLTV 467 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a 467 (648)
...++++|..+..+.. .++. ..|+++-.. ....|++++|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4567777777766543 3221 256665433 34567888888888777653 122334555666667
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHhhcCCHHHH--HHHHhhCC-----CCC----CHHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCM-----VDMLGRVGRLEEA--EELVGQIP-----GGP----GLSVLQS 531 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A--~~~~~~~~-----~~~----~~~~~~~ 531 (648)
..-.|++++|..+.....+. .-.-+..++... ...+...|+...| +..+.... .+| -..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788888888877665432 222333333322 2335566632222 22222211 122 2233334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccC
Q 006364 532 LLGACRIHGNVEMGERIADALMKME----PAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKE 594 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 594 (648)
++.++.+ .+.+..-..+..+.. |..- ..+..|+.++...|+.++|...+.++..-.....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 4444433 444444444444332 2221 1234788888999999999888888876554443
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.26 E-value=16 Score=27.85 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc---CChhhHHHHHHHHHHCC
Q 006364 201 MSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---MNREDAVSLFKEMRLDG 250 (648)
Q Consensus 201 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---g~~~~a~~~~~~m~~~g 250 (648)
+..+...|++++|..+.+.+..||...|-++-. |-.+.+..-+.+|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 344667899999999999999999999998887 55555555555565554
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.60 E-value=74 Score=30.08 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC-----CCcchHHHHHHHHHc-CCCChHHHH-HHHHHHH-HCCCCCChhhHHHHH
Q 006364 95 GNALITMYSRWGRLVEARRVFDEMPN-----KDSVSWNAILSGYTQ-DGDYGVEAI-LALIEMM-RKGLRLDHVSFTSAA 166 (648)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g~~~~~a~-~~~~~m~-~~g~~p~~~t~~~ll 166 (648)
|..|+. +...+.+|+++|+.... .|...-..+++.... .+ ..-.|+ ++.+-+. ..|..++..+...+|
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~-~~l~alYEvV~~l~~t~~~~l~~~vi~~Il 209 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN-TKLNALYEVVDFLVSTFSKSLTRNVIISIL 209 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc-cchhhHHHHHHHHHhccccCCChhHHHHHH
Confidence 555553 34556788888884221 355566666666666 33 211222 2223332 235678888999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhCCChHHHHHHHhc
Q 006364 167 SACGHEKNLELGKQIHGVSIKM-GYGTHVSVGNVLMSTYSKCEVTGDANKVFRR 219 (648)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (648)
..++..+++..-.++++..... +...|...|..+|+.-...|+..-..++.+.
T Consensus 210 ~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 210 EILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999999999999999988776 6778999999999999999998877777654
No 352
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.36 E-value=6.7 Score=37.26 Aligned_cols=82 Identities=10% Similarity=-0.035 Sum_probs=47.0
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
..-|.+.|.+++|+.+|...+ .+.| +..++..-..+|.+..++..|+.-..... ..=...+.+|.+.+...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-----aLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-----ALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-----HhhHHHHHHHHHHHHHH
Confidence 344667777777777776654 4456 56666666667777777666655433321 11123456666666655
Q ss_pred HHHHHHHHHHh
Q 006364 544 MGERIADALMK 554 (648)
Q Consensus 544 ~a~~~~~~~~~ 554 (648)
.+....+++.+
T Consensus 176 ~~Lg~~~EAKk 186 (536)
T KOG4648|consen 176 ESLGNNMEAKK 186 (536)
T ss_pred HHHhhHHHHHH
Confidence 55555544443
No 353
>PF13934 ELYS: Nuclear pore complex assembly
Probab=75.22 E-value=40 Score=30.88 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=58.6
Q ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 006364 426 WTAIISALA--RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVD 502 (648)
Q Consensus 426 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 502 (648)
|...+.|+- .++++++|++++-+- .+.|+... -++.++...|+.+.|..+++.+. -.+ +......++.
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~----p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG----PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC----CCCCCHHHHHHHHH
Confidence 334444433 356666776666221 12233222 35666666788888888877652 122 2333333344
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG 540 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 540 (648)
. ...+.+.||..+.+....+-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 455788888888877765433556677776666544
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.17 E-value=5.8 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 564 VLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
..|+.+|...|+.+.|.++++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 45788899999999999998887753
No 355
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.89 E-value=11 Score=35.80 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GG--P--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
..+|--=.+-|.+..++..|...|.+-. .. | +...|+.=..+-.-.||+..+..=..+++..+|.+...|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4555555777888999999999987754 11 2 2345555555566779999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHH
Q 006364 568 NLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~m 586 (648)
.++....++++|....+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999988888776543
No 356
>PRK12798 chemotaxis protein; Reviewed
Probab=73.54 E-value=1e+02 Score=30.82 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHhhcCCC----ChhHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcccCcHH
Q 006364 405 RGSIFESQRVFNETQEK----SEFAWTAIISAL-ARHGDYESVMNQFKEMENKGVRPDSI----TFLSVLTVCGRNGMIH 475 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 475 (648)
.|+.++|.+.+..+... ....|-.|+.+- ....+..+|+.+|++..- .-|... ..-.-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58888999888877643 455677776654 456689999999998765 345432 2333344567889999
Q ss_pred HHHHHHHHhHHhcCCCCChHH-HHHHHHHHhhc---CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 476 KGRHLFDSMLKDYHIEPSPDH-YSCMVDMLGRV---GRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
++..+-....++|.-.|=... +..++.++.+. -..+.-..++..|...-...+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777777777775333 33333344333 34555566667776444456788888888999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHh-----cCCcHHHHHHHH
Q 006364 552 LMKMEPAGSGSYVLMSNLYAE-----KGDWEMVAILRK 584 (648)
Q Consensus 552 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~ 584 (648)
+..+...+ ..-...++.|.. ..+.+++.+.++
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 99886332 222233333332 234555555554
No 357
>PRK09687 putative lyase; Provisional
Probab=72.20 E-value=93 Score=29.69 Aligned_cols=237 Identities=11% Similarity=-0.002 Sum_probs=106.4
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCCh----HHHHHHHHHHHHCCCCCChhhHHH
Q 006364 89 DSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYG----VEAILALIEMMRKGLRLDHVSFTS 164 (648)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~~a~~~~~~m~~~g~~p~~~t~~~ 164 (648)
.+|..+....+..+...|..+-...+..-...+|...-...+.++.+-| .. .+++..+..+... .|+...-..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLG-MAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3455555555555655554433333333233455555555666666666 42 3566666665332 345555555
Q ss_pred HHHHhcCCCChhH--HHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHH
Q 006364 165 AASACGHEKNLEL--GKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSL 242 (648)
Q Consensus 165 ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~ 242 (648)
.+.+++..+.-.. -..+...+...-..++..+-...+.++++.|+.+....+...+..+
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~------------------- 171 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP------------------- 171 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC-------------------
Confidence 5555554432111 1122222222222345555556666666666533222222222222
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhcCC-chHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCc
Q 006364 243 FKEMRLDGVCPNDVTFIGLIHAISIGN-LVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREI 321 (648)
Q Consensus 243 ~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 321 (648)
|...-...+.++...+ +-..+...+..+. -.++..+-...+.++++.|+......+.+.+..++
T Consensus 172 -----------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~- 236 (280)
T PRK09687 172 -----------NGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT- 236 (280)
T ss_pred -----------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc-
Confidence 2222222333333321 1122222222222 23455555666666666666443333444443333
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHh
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAV 365 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~ 365 (648)
..-..+.++...|.. +|+..+..+.... ||...-...+.+|
T Consensus 237 -~~~~a~~ALg~ig~~-~a~p~L~~l~~~~-~d~~v~~~a~~a~ 277 (280)
T PRK09687 237 -VGDLIIEAAGELGDK-TLLPVLDTLLYKF-DDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhcCCH-hHHHHHHHHHhhC-CChhHHHHHHHHH
Confidence 223455666666653 5666666655422 2444444444443
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.71 E-value=23 Score=32.05 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCHHH-------HHHHHHHHHhcC--CC----CchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 528 VLQSLLGACRIHGNVEM-------GERIADALMKME--PA----GSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.+..+.+.|+..|+-+. |...|+++.+.+ |. .......++.++.+.|+.++|.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45556666777776444 444444444433 22 2456778999999999999999999887653
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.78 E-value=8.8 Score=21.74 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999998888888887766543
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.16 E-value=13 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 548 IADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.++...+.+|+|...-..++..+...|++++|.+.+-.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666555444
No 361
>PRK10941 hypothetical protein; Provisional
Probab=69.01 E-value=41 Score=31.71 Aligned_cols=67 Identities=7% Similarity=-0.120 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 498 SCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
+.+-.+|.+.++++.|+++.+.+. .+.++.-|+--+-.+.+.|....|..=++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 445556777777777777777654 3445555666666777778888888878888777777765543
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.90 E-value=17 Score=37.36 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=76.6
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
..-.|+...|..++.... ...|. -.....|...+.+.|...+|..++.+.. ....+.++..+.+++....|++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 356788889999888775 44664 3445667777888888888888876543 2334456778888999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 544 MGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
.|.+.++.++++.|+++..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999888777666544
No 363
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.39 E-value=83 Score=27.63 Aligned_cols=117 Identities=9% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhh
Q 006364 428 AIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGR 506 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~ 506 (648)
.++..-.+......++.++++...- ...-.-|.-|.+.|+++.+...|.....-++-.. ....+..+
T Consensus 62 pll~~~~k~~~l~~~l~~l~r~~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v------ 129 (182)
T PF15469_consen 62 PLLERREKADKLRNALEFLQRNRFL------FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV------ 129 (182)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH------
Confidence 3333334444455555555554421 1222455667777888888888877754432221 22222221
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 507 VGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 507 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+.++..+++.+. ...|..|.... ...+....+++.+.+++|++.++|..+
T Consensus 130 ---~~eve~ii~~~r----~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 ---WSEVEKIIEEFR----EKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred ---HHHHHHHHHHHH----HHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 222222222221 11222222111 456667777788888887665555544
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.63 E-value=95 Score=27.98 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhh---CC--CCCCHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQ---IP--GGPGLSVLQSLLG 534 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~---~~--~~~~~~~~~~l~~ 534 (648)
....++.+.+.+..++|+...+.-++. +|+ ...-..+++.|+-.|++++|..-++- +. ..+....|+.++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344455666778888888888776654 665 66666788889999999998766554 32 2355667777776
Q ss_pred H
Q 006364 535 A 535 (648)
Q Consensus 535 ~ 535 (648)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.76 E-value=2e+02 Score=31.31 Aligned_cols=185 Identities=14% Similarity=0.207 Sum_probs=88.4
Q ss_pred hhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHH--HHhCCChHHHHHHHH--------HHHHCCCCCCHHHHH
Q 006364 403 GKRGSIFESQRVFNETQEK----------SEFAWTAIISA--LARHGDYESVMNQFK--------EMENKGVRPDSITFL 462 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~~ 462 (648)
+-.|++..|......+.+. ....+...+.| +-..|+.+.|...|. .....+..++...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3456677777777665521 11233333333 334688888888887 333344444443333
Q ss_pred HH--HHHhc--ccCcHHH--HHHHHHHhHHhcCCCCC--hHHHHHHH-HHHhhcC---------CHHHHHHHH-hhCCCC
Q 006364 463 SV--LTVCG--RNGMIHK--GRHLFDSMLKDYHIEPS--PDHYSCMV-DMLGRVG---------RLEEAEELV-GQIPGG 523 (648)
Q Consensus 463 ~l--l~a~~--~~g~~~~--a~~~~~~m~~~~~~~p~--~~~~~~l~-~~~~~~g---------~~~~A~~~~-~~~~~~ 523 (648)
.+ +..+. .....++ ..++++.+.....-.|+ ..++.+++ .++.... .+.++++.. +.....
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 11111 1222222 66677666443233333 33334443 3332111 233344444 222211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCc-hhH-----HHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKME---PAGS-GSY-----VLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
--....-++++.-.-.|+..+..........+- |+.. ..| ..+.+.|...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 112222333433333688877666665555433 2222 233 255566888899999998887654
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.64 E-value=63 Score=29.90 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc----hhH
Q 006364 498 SCMVDMLGRVGRLEEAEELVGQIP--------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM--EPAGS----GSY 563 (648)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~ 563 (648)
..+|....+.|++++.++.+.++. ..-+....++++..-....+.+.-...|+..++- +..+. .+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 334555556666666655555443 2234455677777666777777777666665431 12222 244
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 564 VLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..|+++|...|.+....++++++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHH
Confidence 5788899998988888888887753
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.34 E-value=81 Score=26.38 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006364 458 SITFLSVLTVCGRNGM-IHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR 506 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 506 (648)
..+|.+++.+.+...- ---+..+|.-+.+ .+.+++...|.+|+.+..+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Confidence 3455555555544444 3334445555543 2455555555555555443
No 368
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.28 E-value=22 Score=32.29 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=56.0
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHH-HHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPSP-DHYSCMVDMLGRVGRLEEAEELVGQI-PGGPGLSVLQ-SLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~ 543 (648)
-|.....++.|+..|.+.+ .+.|+. .-|..=+..+.+..+++.+..--++. ...|+..--. .+.........+.
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3666677888888777665 568884 55666677777888888776654443 3445544333 3444455666788
Q ss_pred HHHHHHHHHHhc
Q 006364 544 MGERIADALMKM 555 (648)
Q Consensus 544 ~a~~~~~~~~~~ 555 (648)
.|...+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
No 369
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.22 E-value=94 Score=31.69 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=69.2
Q ss_pred hhcccChhhHhHHHHHHHHhCCCCCcch--HHHHHHHHHhCCChhHHHHHhccCCCCCcc--hHHHHHHHHHcCCCChHH
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDSEVYV--GNALITMYSRWGRLVEARRVFDEMPNKDSV--SWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~~ 142 (648)
.+..|+.+. .+.+.+.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. ...+-+...+..| +.+.
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g-~~~~ 83 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEG-DVKA 83 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCC-CHHH
Confidence 344566544 444455676665432 344556667788888777776654333221 1123344555667 6544
Q ss_pred HHHHHHHHHHCCCCCChh---hHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcch--HHHHHHHHHhCCChHHHHHHH
Q 006364 143 AILALIEMMRKGLRLDHV---SFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSV--GNVLMSTYSKCEVTGDANKVF 217 (648)
Q Consensus 143 a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 217 (648)
+ +.+.+.|...+.. .-.+.+...+..|+.+ +.+.+.+.|..|+... ....+...+..|+.+-+..++
T Consensus 84 v----~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 84 V----EELLDLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred H----HHHHHcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3 3333334322111 0112333334455543 4455556676655432 233455556667766665555
Q ss_pred hc
Q 006364 218 RR 219 (648)
Q Consensus 218 ~~ 219 (648)
+.
T Consensus 156 ~~ 157 (413)
T PHA02875 156 DH 157 (413)
T ss_pred hc
Confidence 44
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.05 E-value=2.1e+02 Score=32.17 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=23.3
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMR 152 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~ 152 (648)
-|..|+.-|...| ..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg-~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKG-MHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhcc-chHHHHHHHHHHhc
Confidence 4888899999999 88999999988865
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.51 E-value=17 Score=26.40 Aligned_cols=47 Identities=4% Similarity=0.039 Sum_probs=33.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHH
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
...+.++|+..|....+.-..|.. .++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888887775333332 56778888888888888877653
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.70 E-value=1.3e+02 Score=28.25 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=78.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHhcccCcHHHHHHHHHHh---HHhcCCCCChHHHHH
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSIT-------FLSVLTVCGRNGMIHKGRHLFDSM---LKDYHIEPSPDHYSC 499 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~ 499 (648)
.+-..+.+++++|+..|.+....|+..|..+ ...+..-|...|++..-.+..... ..++.-.........
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445567888999999999998888777654 444556666777665544433222 122121122445555
Q ss_pred HHHHHhhcC-CHHHHHHHHhhCC---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC--CCCchhHH
Q 006364 500 MVDMLGRVG-RLEEAEELVGQIP---GGP-----GLSVLQSLLGACRIHGNVEMGERIADALM----KME--PAGSGSYV 564 (648)
Q Consensus 500 l~~~~~~~g-~~~~A~~~~~~~~---~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~--p~~~~~~~ 564 (648)
|++.+.... .++.-..+..... .+. ....-..++..+.+.|.+..|.....-+. +++ |.-...|.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 555544332 2333333333221 000 01111234556666666666665544332 222 33344555
Q ss_pred HHHHHHHhcCCcHHHHHHHH
Q 006364 565 LMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~ 584 (648)
.=+.+|....+..++..-+.
T Consensus 170 lESKvyh~irnv~KskaSLT 189 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHH
Confidence 55556655555544444443
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.41 E-value=1.3e+02 Score=30.33 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhc--ccCcHHHHHHHHHHhHHh
Q 006364 432 ALARHGDYESVMNQFKEMENKGVRPDSI--TFLSVLTVCG--RNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 487 (648)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334677788888888887776 555444 3334444442 345677777777776543
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.17 E-value=61 Score=28.16 Aligned_cols=59 Identities=14% Similarity=0.316 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCc-----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 006364 441 SVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGM-----------IHKGRHLFDSMLKDYHIEPSPDHYSCMVDML 504 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 504 (648)
+|+.-|++.+. +.|+. .++..+..++...+. +++|.++|+.... .+|+...|..-+.+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 33333444333 55664 455555555543321 3444444444433 366666665555544
No 375
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.80 E-value=44 Score=30.48 Aligned_cols=53 Identities=6% Similarity=-0.090 Sum_probs=42.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+...|++-++++--...+...|.+..+|..-+.+.+..=+.++|..=+....
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888888888999999999999988888777777777666554
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.76 E-value=32 Score=20.62 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 006364 529 LQSLLGACRIHGNVEMGERI--ADALMKMEPA 558 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~ 558 (648)
|-.+...+...|++++|+.+ ++.+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555666667777777777 4465555544
No 377
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.71 E-value=1.5e+02 Score=31.07 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=68.5
Q ss_pred cccCcHHHHHHHHHHhHHhcCC---------CC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC----------C------
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHI---------EP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP----------G------ 522 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~------ 522 (648)
.+...++++.+.|...+..+.. .| .+.+.-.|.+.+...|+.+-|..++++.. .
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 3445556666665555433211 12 13344445566666777666666554432 0
Q ss_pred ------CC-CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCCcHHHHHHHHHH
Q 006364 523 ------GP-GLSVLQSL---LGACRIHGNVEMGERIADALMKMEPA-GSGSYVLMSNLYA-EKGDWEMVAILRKGM 586 (648)
Q Consensus 523 ------~~-~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m 586 (648)
.| +-..|.+| +....+.|-+..|.+..+.++.++|. ||-....+++.|+ ++.+++--+++.+..
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 01 22223332 34556778888888888888888887 8877777777776 445666666666655
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.47 E-value=2e+02 Score=29.65 Aligned_cols=163 Identities=8% Similarity=0.022 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHH
Q 006364 350 ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAW 426 (648)
Q Consensus 350 ~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 426 (648)
..+.|.....+++..++... ...-...+..+|...| .+...+-.++..|... ..+.-..+|+.+.+ .|++.-
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~--k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ 135 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNH--KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIG 135 (711)
T ss_pred hccccchHHHHHHHHhccch--HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHH
Confidence 44557777777777777766 6666666666666654 3455566667777666 44555556654443 233333
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 006364 427 TAIISALARHGDYESVMNQFKEMENKGVRPDS------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCM 500 (648)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 500 (648)
..|..-|-+ ++.+.+...|.+.... +-|-. ..|.-+..-. ..+.+.-.++......+.|...-...+.-+
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 334444433 6666666677666654 22211 1233333211 345555666666665555554445555555
Q ss_pred HHHHhhcCCHHHHHHHHhhCC
Q 006364 501 VDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~ 521 (648)
-.-|.-..++.+|.+++..+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 212 YKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred HHHhccccCHHHHHHHHHHHh
Confidence 566666666777777666554
No 379
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.97 E-value=2.9e+02 Score=31.83 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=26.6
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCC-CC-hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIE-PS-PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
|..+++-+...+..+.+.++-..+++..+.. |+ ..+++++.+-....|.+-+|...+-.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 3344444444444455544444444321111 22 33455555555555555555554443
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.26 E-value=21 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=13.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC
Q 006364 429 IISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 381
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.10 E-value=90 Score=29.30 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=50.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 006364 429 IISALARHGDYESVMNQFKEMEN--KGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR 506 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 506 (648)
=|.+++..+++.+++...-+--+ +.++|...-..++ -|++.|....+.++-..-.+. .-.-+...|..+++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHH
Confidence 36777777777777665443332 1244444444333 367777777777766666544 111223346666665543
Q ss_pred -----cCCHHHHHHHHh
Q 006364 507 -----VGRLEEAEELVG 518 (648)
Q Consensus 507 -----~g~~~~A~~~~~ 518 (648)
.|.++||++++.
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 588888888774
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.87 E-value=65 Score=25.99 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
+..+-++....-.+.|++......|+||.+.+|+..|.++|+....+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 33444555566678999999999999999999999999999988654 3343445666654
No 383
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.14 E-value=76 Score=26.09 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
-|.-+|.+.++++.+.++.+.+++.+|+|..
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3445677888888888888888888887653
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.08 E-value=35 Score=26.00 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=32.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 537 RIHGNVEMGERIADALMKMEPA----G-----SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+.||+..|...+.+..+.... . ......++.++...|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566777776665555543211 1 2234567777888899988888887654
No 385
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.71 E-value=1.3e+02 Score=26.11 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=80.8
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHH-----HHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH--hcccCc
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAII-----SALARHGDYESVMNQFKEMENKGVRPDSI-TFLSVLTV--CGRNGM 473 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a--~~~~g~ 473 (648)
.+..+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|+..|++.-...-.|-.. -...|=.+ +...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678889999999998887666665543 35678899999999999987644444332 22222223 467888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 474 IHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
+++...-.+-+..+ +-......-..|.-+--+.|++.+|.+.|..+.
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 88887777766432 222224445566667778999999999988765
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.99 E-value=82 Score=25.66 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=31.5
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 476 KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
.+.++|..|..+ |+--. ..-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777788888766 66665 67777777788888888888877753
No 387
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.77 E-value=58 Score=25.39 Aligned_cols=74 Identities=9% Similarity=-0.010 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc---CChhhHHHHHHHHHHC
Q 006364 175 LELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---MNREDAVSLFKEMRLD 249 (648)
Q Consensus 175 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---g~~~~a~~~~~~m~~~ 249 (648)
.++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-++-. |-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHHhC
Confidence 4455555555544432 222222333445667788888865555566678777777766 5555555555555443
No 388
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.53 E-value=18 Score=36.40 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
++.+.+++..|..=+.++++++|.....|+.-+.++.+.+++.+|...++
T Consensus 47 a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 47 AHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred hheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555544
No 389
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.44 E-value=85 Score=23.72 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCc-HHHHHHHHHH
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPA--GSGSYVLMSNLYAEKGDW-EMVAILRKGM 586 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 586 (648)
|......+...+...|+++.|...+-.+++.+|. +...-..|..++...|.- .-+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455566666777777777777777777666543 356666777777777763 3455555554
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.03 E-value=17 Score=32.65 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=31.0
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 505 GRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
.+.|+.+.|.+++.+.. .+.....|-.+...-.+.|+.+.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555543 22344455555555566666666666666666666554
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.80 E-value=2e+02 Score=31.14 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=33.9
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 501 VDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
-..++|.|.++.-.+.++- .+.+.+-.-.+|+..|.++.+.+.++.|+.-
T Consensus 351 n~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 351 NSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 3445666666665554442 2345556667889999999999999988753
No 392
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.36 E-value=71 Score=33.37 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=68.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
....|+++.|-.++.... ...-+.+..-+.+.|..++|+++ .||...- .++..+.|+++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~----------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL----------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc----------CCChhhh---hhhhhhcCcHHH
Confidence 344566666655433221 22334555556777777777654 3443322 345568899999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
|.++..+.. +..-|..|..+....|++..|.+.+.++...
T Consensus 656 A~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 656 AFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 999887654 6678999999999999999999999987653
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.36 E-value=91 Score=25.39 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 544 MGERIADALMK--MEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 544 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
.+..+|+.+.. ++...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888875 4567788999999999999999999998864
No 394
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.13 E-value=1.5e+02 Score=30.80 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcC
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQ 419 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~ 419 (648)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346677888888888888888776
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.55 E-value=20 Score=29.11 Aligned_cols=17 Identities=29% Similarity=0.122 Sum_probs=8.6
Q ss_pred hHHHHHHHHHhCCCCCC
Q 006364 40 DALSFALRMNLIGVVFD 56 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~ 56 (648)
+|-.+|..|...|-+||
T Consensus 113 DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 113 DAYAVFRKMLERGNPPD 129 (140)
T ss_pred cHHHHHHHHHhCCCCCc
Confidence 45555555555554444
No 396
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.37 E-value=27 Score=32.85 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=41.5
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
..+.|+.++|..+|+... .+.++.++.-+......+++.-+|.++|-+++.+.|.+..+.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 446788888888887643 2334555555666666667777888888888888887766544
No 397
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.23 E-value=1.2e+02 Score=27.79 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHH
Q 006364 452 KGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGP-GLSVLQ 530 (648)
Q Consensus 452 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 530 (648)
.+++|....+.--+.. ...+++++|.+.+-.- .+.|+ .-..++.++.+.|+.+.|+.+++.....+ +.....
T Consensus 73 f~ip~~~~~~~~g~W~-LD~~~~~~A~~~L~~p----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~ 145 (226)
T PF13934_consen 73 FGIPPKYIKFIQGFWL-LDHGDFEEALELLSHP----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALT 145 (226)
T ss_pred hCCCHHHHHHHHHHHH-hChHhHHHHHHHhCCC----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHH
Confidence 3566655544333333 4448888888887432 33343 22246777777999999999999887443 333334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
.++.. ...+++.+|....+...+- .....+..+...+.
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~--~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDE--LRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchh--hhHHHHHHHHHHHH
Confidence 44444 6678888887776654431 11234444444444
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.94 E-value=48 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 399
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.32 E-value=1.2e+02 Score=29.11 Aligned_cols=55 Identities=5% Similarity=0.033 Sum_probs=34.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHHh
Q 006364 428 AIISALARHGDYESVMNQFKEMENKGVRPDS---ITFLSVLTVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m 484 (648)
.+..+-.+.|+..+|.+.|+++.+. .|-. .....|+.+|....-+.+...++-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556778888888888886653 2322 22345777777766666666665544
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.31 E-value=1.6e+02 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=22.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
+..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 4567777777777777777776 55554443333333
No 401
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.22 E-value=18 Score=39.23 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=56.6
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 544 (648)
|.-+.+.|-.+-|+.+.+.=..+ ..+...+|+++.|++.-.+.. +..+|..|+..-..+||.+.
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHH
Confidence 44445666666666655433222 233446788888888777654 66788888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
|+..|++... +..|.-+|.-.|+.++
T Consensus 691 aEm~yQ~~kn--------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 691 AEMCYQRTKN--------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred HHHHHHHhhh--------hhheeEEEEEeCCHHH
Confidence 8888887653 2334444555555443
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.67 E-value=95 Score=23.24 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHH
Q 006364 275 RMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAA 340 (648)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (648)
.+++..+.+.|+-.+ .....+-..-...|+.+.|.++++.++ +.+-.|..++.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 445555555553221 122222222225588888888888888 8888888888888877765544
No 403
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=51.08 E-value=1.8e+02 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
..+.++..+...|+++.|-+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566777777777777777777777764
No 404
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.97 E-value=1.4e+02 Score=27.34 Aligned_cols=81 Identities=5% Similarity=-0.034 Sum_probs=46.3
Q ss_pred HhhcCCHHHHHHHHhhcC--CCCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCcHHHH
Q 006364 402 YGKRGSIFESQRVFNETQ--EKSE-FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL-SVLTVCGRNGMIHKG 477 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a 477 (648)
|....+++.|...|.+.. .|++ .-|+.-+.++.+..+++.+.+--.+..+ +.||.+--. .+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444556666666665443 3443 3455666677777777776665555554 556654333 233344555666777
Q ss_pred HHHHHHh
Q 006364 478 RHLFDSM 484 (648)
Q Consensus 478 ~~~~~~m 484 (648)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7666665
No 405
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=50.50 E-value=1.4e+02 Score=24.37 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=66.0
Q ss_pred CChhHHHHHhhcCCCCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhH---HHHHHHhhc-------ccChh
Q 006364 8 GQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTY---STALSFCLD-------HEGFL 74 (648)
Q Consensus 8 g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~-------~~~~~ 74 (648)
.++.-|..++.+....+ .+...++.+.+.+ .++++..++....-.|..+.- +.-++.|-. .+...
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 35566777777655322 3667777777777 888999888887755554422 222333332 12233
Q ss_pred hHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 75 FGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 75 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
..-.+...+++.++......+.-+=..+.+..++.+|..+|+-+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 34445566666666555556666666666777777777777654
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.30 E-value=96 Score=25.07 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=35.6
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 519 QIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 519 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+-.-|++.+..+-+.+|++-+|+..|.++++-+...-++.-..|-.
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 33456888999999999999999999999999888655444344443
No 407
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=2.1e+02 Score=27.74 Aligned_cols=17 Identities=0% Similarity=0.151 Sum_probs=8.5
Q ss_pred ccCcHHHHHHHHHHhHH
Q 006364 470 RNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~ 486 (648)
+.++.++|+++++++.+
T Consensus 87 ~~~D~~~al~~Le~i~~ 103 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIE 103 (380)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 33455555555555543
No 408
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.26 E-value=2.4e+02 Score=26.99 Aligned_cols=98 Identities=8% Similarity=-0.146 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-------CHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCC
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG-------RLEEAEELVGQIPGGPGLSVLQSLLGACRI----HGN 541 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 541 (648)
+..+|...|+.+.+. |..+.......+...|..-+ +...|...+.++-..-+......|...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 566666666666544 43332222233333333221 223566666655433344444444433322 237
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
.+.|...|+++-+.+. ......++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 7788888888777766 45555555 555444
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=49.02 E-value=4.7e+02 Score=30.11 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 006364 492 PSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 492 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 541 (648)
++...-...+.++++.|..+.+...+..+...++..+-...+.++...+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 44455555555555555544433333333334444444445555555543
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.01 E-value=1.3e+02 Score=23.78 Aligned_cols=27 Identities=7% Similarity=0.283 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888766
No 411
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.86 E-value=72 Score=20.64 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456677777778888887887777777766654
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.77 E-value=21 Score=29.02 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
....|.-..|..+|++|++.|-+||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999984 56676654
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.10 E-value=89 Score=26.23 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh
Q 006364 44 FALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRL 108 (648)
Q Consensus 44 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 108 (648)
+...+.+.|++++..-. .++..+...++.-.|.++|+.+.+.+...+..|--.-++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 44566778887666543 56677777777789999999999988766666655666777777643
No 414
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.99 E-value=39 Score=30.52 Aligned_cols=55 Identities=9% Similarity=0.233 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
....+|.+.+.+++.+++++-|.....|..++....++|+.+.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3467899999999999999999999999999999999999999999998876543
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.76 E-value=1.2e+02 Score=22.77 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHH
Q 006364 404 KRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (648)
..|+.+.|.++++.+. +....|...+.++...|...-|-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 66677777777777766655443
No 416
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.57 E-value=96 Score=25.88 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 006364 511 EEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDW 576 (648)
Q Consensus 511 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 576 (648)
+.|.++.+-|. ...............|++.-|.++.+.++..+|++...-...+++|...|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555555553 2333344455567889999999999999999999999999999988876643
No 417
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.56 E-value=2.6e+02 Score=26.36 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=44.2
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFL-SVLTV 467 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 467 (648)
..++.....+...|.+.|++.+|+..|-.-..++...+..++.-.... |.+.+...|. ..+--
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL~ 150 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK----------------GYPSEADLFIARAVLQ 150 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH----------------TSS--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh----------------cCCcchhHHHHHHHHH
Confidence 357788888999999999999999887554443333332222222222 2222222221 12223
Q ss_pred hcccCcHHHHHHHHHHhHHh
Q 006364 468 CGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~ 487 (648)
|...|+...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 45567788888777766544
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.33 E-value=2e+02 Score=27.16 Aligned_cols=21 Identities=10% Similarity=-0.044 Sum_probs=13.3
Q ss_pred HHHHHhcCCcHHHHHHHHHhH
Q 006364 328 ISGYAQNGLSLAAVQAFFGVI 348 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~ 348 (648)
|.+++..+++.+++...-+--
T Consensus 90 IQALAEmnrWreVLsWvlqyY 110 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYY 110 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHh
Confidence 566777777777766554443
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.24 E-value=30 Score=32.58 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=37.7
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP 524 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 524 (648)
.+.|+.++|..+|+... .+.|+ +....-+........++-+|-.++-+.. ..|
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 57899999999999986 56787 6666666655555566777777766544 344
No 420
>PHA03100 ankyrin repeat protein; Provisional
Probab=45.91 E-value=3.2e+02 Score=28.50 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=9.0
Q ss_pred HHHHhcCChHHHHHHHhh
Q 006364 298 TMYARFESMQDSEKVFDE 315 (648)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~ 315 (648)
....+.+..+-+..+++.
T Consensus 288 ~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 288 HIAILNNNKEIFKLLLNN 305 (480)
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 334455555555555543
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.28 E-value=84 Score=27.91 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=35.0
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
....+.+......+.+.+.....|+...|..++.++...|+.++|.+...++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555555444444444444557888888888888888888888877777654
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.93 E-value=1.2e+02 Score=26.40 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHhcCCCCC--hHHH-----HHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006364 474 IHKGRHLFDSMLKDYHIEPS--PDHY-----SCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGA 535 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 535 (648)
.+.|+.+|+.+.+... .|. .... ...+-.|.+.|.+++|.+++++....|+.......+..
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 4556666666655422 221 1111 12244577778888888888776655555544443333
No 423
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.82 E-value=2.8e+02 Score=25.95 Aligned_cols=207 Identities=14% Similarity=0.212 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHhHh----CC--CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH----h-CCCCchhH
Q 006364 326 ALISGYAQNGLSLAAVQAFFGVIK----ES--KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK----V-GLDSDPIV 394 (648)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~----~~--~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~ 394 (648)
.+|..+.+.+++++.++.|.++.. .+ .-+..+.++++.-.+... ..+.-..+++.-.+ . +-..=-.+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~--~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK--NMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 345555555555555555555543 11 123344555554444333 33333333332221 0 10111123
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCC---------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEK---------------SEFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDS 458 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 458 (648)
-+-|...|...|.+.+..+++.++.+. -...|..=|..|....+-..-..+|++...- .--|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345667777778888888877766421 1346777788888888888888888876652 233444
Q ss_pred HHHHHHHHHh-----cccCcHHHHHHHHHHhHHhcCC--CCC---hHHHHHHHHHHhhcCC----HHHHHHHHhhCCCCC
Q 006364 459 ITFLSVLTVC-----GRNGMIHKGRHLFDSMLKDYHI--EPS---PDHYSCMVDMLGRVGR----LEEAEELVGQIPGGP 524 (648)
Q Consensus 459 ~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~~~~~--~p~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~ 524 (648)
.. ..+++-| .+.|.+++|---|-++.+.+.- .|. ---|-.|.+++.+.|- -++|. -....|
T Consensus 228 lI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 43 3456666 3567888876544444343322 233 2235666777777662 12211 011335
Q ss_pred CHHHHHHHHHHHHHc
Q 006364 525 GLSVLQSLLGACRIH 539 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~ 539 (648)
.......|+.+|...
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566778888887654
No 424
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.63 E-value=1.6e+02 Score=26.30 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHhcCCcHHHHHHHHHHhhCCC-ccCCceeEEEEcC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS-YVLMSNLYAEKGDWEMVAILRKGMKSKGV-RKEVGFSWADVGD 604 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~s~~~~~~ 604 (648)
.....++..|...||++.|-++|..+++..+-|... |-.=+.++.+.+.-....+.++.|...=. ++.... .....
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~-~~~~~- 119 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQ-YYNRR- 119 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccc-hhhhh-
Confidence 456778889999999999999999999877666544 33444566666665555577776643211 111101 11111
Q ss_pred CCceEEEecCCCCCcC
Q 006364 605 IDGLHGFSSGDNTHPR 620 (648)
Q Consensus 605 ~~~~~~f~~~~~~~~~ 620 (648)
...+.|..|...|--
T Consensus 120 -~~~pvfrsGs~t~tp 134 (199)
T PF04090_consen 120 -IIAPVFRSGSRTHTP 134 (199)
T ss_pred -cccccccCCCcccch
Confidence 235788888888844
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.51 E-value=48 Score=31.44 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVL 465 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 465 (648)
-|+..|..-.+.|++++|+.+++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888888888999999999988888776666665443
No 426
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.70 E-value=2.5e+02 Score=24.82 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCC--------------CCcchHHHHHHHHHhCCChHHHHHHHhc
Q 006364 163 TSAASACGHEKNLELGKQIHGVSIKMGYG--------------THVSVGNVLMSTYSKCEVTGDANKVFRR 219 (648)
Q Consensus 163 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 219 (648)
.+++-.|-+..++..++++++.+.+..+. +--.+.|.-...+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45666677778888999998888776432 2334567777888888888888888763
No 427
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.54 E-value=4e+02 Score=27.18 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=30.7
Q ss_pred hHHHHHHHHHc---CCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 006364 125 SWNAILSGYTQ---DGDYGVEAILALIEMMRKGLRLDHVSFTSAASACG 170 (648)
Q Consensus 125 ~~~~li~~~~~---~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 170 (648)
..-.+++++.+ .+ +++.|+..+..|.+.|..|....-..++.++-
T Consensus 229 ~~~~~isa~~ks~rgs-d~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 229 EHYDLISALHKSIRGS-DPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34455555555 35 88899999999999888877655555444443
No 428
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=41.48 E-value=4.1e+02 Score=27.22 Aligned_cols=143 Identities=9% Similarity=0.061 Sum_probs=81.2
Q ss_pred HHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCC---CcchHHHHHHHHHcCCCCh
Q 006364 64 LSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK---DSVSWNAILSGYTQDGDYG 140 (648)
Q Consensus 64 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 140 (648)
+.+.+..|.++-++.+.+.- ..+..++.|-+.=+.+-|-.|+++-...+++.=..| |..--+.|+-++.+..
T Consensus 88 LWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh--- 162 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH--- 162 (615)
T ss_pred hhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc---
Confidence 44555667766555444432 223334444445566666789999888888655443 3333444444444433
Q ss_pred HHHHHHHHHHHHCCCCCChhhH--HHHHHHhcCCCChhHHHHHHHHHHHhcCCCCc--chHHHHHHHHHhCCChHHHHHH
Q 006364 141 VEAILALIEMMRKGLRLDHVSF--TSAASACGHEKNLELGKQIHGVSIKMGYGTHV--SVGNVLMSTYSKCEVTGDANKV 216 (648)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~ 216 (648)
.++.+.+.+.|..+|..++ ++.+.-|+.+|.++-.+.++ +.|...+. .-.+-|+ .....|..+....+
T Consensus 163 ---~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll----~~ga~i~~d~~GmtPL~-~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 163 ---VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL----KHGAKIDVDGHGMTPLL-LAAVTGHTDIVERL 234 (615)
T ss_pred ---hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH----hCCceeeecCCCCchHH-HHhhhcchHHHHHH
Confidence 3456667777888887766 67888899999887555444 44432222 2112222 23445666666655
Q ss_pred Hhc
Q 006364 217 FRR 219 (648)
Q Consensus 217 ~~~ 219 (648)
.+.
T Consensus 235 ~~~ 237 (615)
T KOG0508|consen 235 LQC 237 (615)
T ss_pred hcC
Confidence 553
No 429
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.27 E-value=4.3e+02 Score=27.45 Aligned_cols=160 Identities=12% Similarity=0.172 Sum_probs=109.3
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALL 399 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (648)
|....-+++..+..+....-...+..+|.. ...+...|-.++..|...+ .+.-..++.++++..+. |+.....|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~e~kmal~el~q~y~en~---n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YGESKMALLELLQCYKENG---NEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcC---chhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 445667788888888888888888888877 2245667777777777664 45667777877776553 555556677
Q ss_pred HHHhhcCCHHHHHHHHhhcCCC------C---hhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhc
Q 006364 400 DMYGKRGSIFESQRVFNETQEK------S---EFAWTAIISALARHGDYESVMNQFKEMEN-KGVRPDSITFLSVLTVCG 469 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~~~~~------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~ 469 (648)
+.|.+ ++...+...|.....+ + -..|.-++..- ..+.+..+.+..+... .|..--.+.+--+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 77776 7888888888766532 1 12566665532 3456777777777665 355555566666777788
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 006364 470 RNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~ 487 (648)
...++++|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 888999999998877643
No 430
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.16 E-value=2e+02 Score=23.47 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=32.4
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 545 GERIADALMKM--EPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 545 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
...+|..+... +...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777754 46677889999999999999999999885
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.00 E-value=3.5e+02 Score=26.28 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=65.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHI---EPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 546 (648)
..+-.+.|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+...
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 333467888888888764111 33556666667777788887776677776666678888889999999999999989
Q ss_pred HHHHHHHhcC-CCCchhHHHHHHHH
Q 006364 547 RIADALMKME-PAGSGSYVLMSNLY 570 (648)
Q Consensus 547 ~~~~~~~~~~-p~~~~~~~~l~~~~ 570 (648)
++++.++..+ -.....+..+..+.
T Consensus 222 ~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHHHHcCCcccccHHHHHHHHHHh
Confidence 9999988843 23334555554444
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.50 E-value=50 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=11.7
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhH
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
..++.++...|++++|.++.+.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555443
No 433
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.45 E-value=1.8e+02 Score=22.84 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHhC
Q 006364 372 SLKHGQRCHSHIIKVG 387 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~ 387 (648)
..++|..|.+.+...+
T Consensus 21 cH~EA~tIa~wL~~~~ 36 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG 36 (116)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4455555555554443
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.17 E-value=1.3e+02 Score=23.70 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHh
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3688899999999999999999988765
No 435
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.15 E-value=2.9e+02 Score=25.10 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=30.6
Q ss_pred HHHHHHhcccCc-------HHHHHHHHHHhHHhcCC--CC-C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 462 LSVLTVCGRNGM-------IHKGRHLFDSMLKDYHI--EP-S-PDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 462 ~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~--~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
.-+...|...|+ +..|.+.|.+..+.-.. .+ + ....-.+..+..|.|+.++|.+.|.++.
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444555555 33455555555433111 11 1 2233344566667777777777776655
No 436
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.13 E-value=2e+02 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhcCCHHHHHH
Q 006364 496 HYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~ 515 (648)
.+..|..++.+.|++++++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 34555566666666666544
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.04 E-value=1e+02 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=13.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSI 459 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 459 (648)
-|+.+.|++++|....+.+.+ +.|+-.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 345555555555555555555 345443
No 438
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.03 E-value=4.6e+02 Score=27.08 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=96.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC-CCCCC--HH-----HHHHHH-HHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENK-GVRPD--SI-----TFLSVL-TVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHY 497 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~-----t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~ 497 (648)
++.+=.-.|++.+|++-..+|.+- .-.|. .. -...++ .-|...|.++.|...|....+. .-.-| ...-
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~n 407 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCN 407 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHH
Confidence 444445679999999999888762 22333 11 112222 3356678899999888887654 22233 3333
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHH------HH--HHHH--HHHcCCHHHHHHHHHHHHhcCC-C-----Cch
Q 006364 498 SCMVDMLGRVGRLEEAEELVGQIPGGPGLSVL------QS--LLGA--CRIHGNVEMGERIADALMKMEP-A-----GSG 561 (648)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~--l~~~--~~~~g~~~~a~~~~~~~~~~~p-~-----~~~ 561 (648)
..+.-.|.+.|+-+.-.++++.+. +|+..++ +. ++.+ ....+++.+|.....+.+++.. . ..-
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 455677889998888888887765 2211111 11 1222 2467899999999888887651 1 133
Q ss_pred hHHHHHHHHHhcCCcHHHHHHH
Q 006364 562 SYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
....|+.+....|+..++.+..
T Consensus 487 ~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhcc
Confidence 5678888899999988876644
No 439
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.87 E-value=1.3e+02 Score=30.43 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
.++++-++.+.+++|+..|-...++++++.|..
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 456777888899999999999999999998865
No 440
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.27 E-value=1.7e+02 Score=21.88 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcC
Q 006364 276 MIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELS 317 (648)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 317 (648)
++|+.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788888888999999999988888777777777777777764
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.94 E-value=1.1e+02 Score=19.74 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006364 139 YGVEAILALIEMMRKGLRLDHVSFTSAA 166 (648)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll 166 (648)
...++...+++|.+.|+..+...|..++
T Consensus 17 lI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 17 LISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred ChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444444444444444444333
No 442
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=4.3e+02 Score=26.38 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=57.1
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHH--HHhHh-CCCCCHHHHHHH
Q 006364 285 NFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAF--FGVIK-ESKPNAYTFGSV 361 (648)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~-~~~p~~~~~~~l 361 (648)
+...+..+...+++.|...++|+.--+... ...-+.|+...|+... +-|.- ...||..|--.+
T Consensus 47 D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 47 DMASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 344555666777777777777765433322 1233556666655432 11222 445566555555
Q ss_pred HHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC
Q 006364 362 LNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQ 419 (648)
Q Consensus 362 l~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 419 (648)
+..+-..- ++ .||-+. -....-..|...+-.+|++++|..++.+.+
T Consensus 113 i~tLr~Vt-----eg-kIyvEv------ERarlTk~L~~ike~~Gdi~~Aa~il~el~ 158 (439)
T KOG1498|consen 113 IETLRTVT-----EG-KIYVEV------ERARLTKMLAKIKEEQGDIAEAADILCELQ 158 (439)
T ss_pred HHHHHHhh-----cC-ceEEee------hHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 54432110 00 011000 012223456677888999999999987766
No 443
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.68 E-value=60 Score=32.88 Aligned_cols=98 Identities=8% Similarity=0.119 Sum_probs=47.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHH
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVL-TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 512 (648)
..+.++.|+.++.+.++ +.||...|-..= .++.+.+++..|+.=+..+++. .|+ ...|..=..++.+.+++.+
T Consensus 16 ~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred ccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHHHH
Confidence 44555666666666555 445443332222 4455555555555555444432 354 4444444444445555555
Q ss_pred HHHHHhhCC-CCCCHHHHHHHHHHHH
Q 006364 513 AEELVGQIP-GGPGLSVLQSLLGACR 537 (648)
Q Consensus 513 A~~~~~~~~-~~~~~~~~~~l~~~~~ 537 (648)
|...|+... ..|+..-....+.-|-
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 555555433 3344444444444443
No 444
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.55 E-value=4.9e+02 Score=27.05 Aligned_cols=19 Identities=5% Similarity=-0.199 Sum_probs=10.2
Q ss_pred HHHHhcCChHHHHHHHhhc
Q 006364 298 TMYARFESMQDSEKVFDEL 316 (648)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~~ 316 (648)
...+..|+.+-+.-+++.-
T Consensus 255 ~~A~~~~~~~iv~~Ll~~g 273 (480)
T PHA03100 255 HYAVYNNNPEFVKYLLDLG 273 (480)
T ss_pred HHHHHcCCHHHHHHHHHcC
Confidence 3344556666555555543
No 445
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.41 E-value=2.2e+02 Score=22.94 Aligned_cols=62 Identities=13% Similarity=-0.013 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchhH----HHHHHHHHhcCCcHHHHHHHHHH
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMK-------MEPAGSGSY----VLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
|...+..|-.++...|+++++....++.+. ++.+....| .+-+.++...|+.++|.+.+++.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345566778889999999888777776653 444443333 34455677889999999988753
No 446
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=37.10 E-value=3.9e+02 Score=25.78 Aligned_cols=167 Identities=12% Similarity=0.098 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006364 375 HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-SEFAWTAIISALARHGDYESVMNQFKEMENKG 453 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 453 (648)
...-+++.+...++-+........++...+.+.++-+..++...-.. |.. .++.. +-.+.+.-++++.+.
T Consensus 18 LifPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p------~a~~e--kr~~Vla~lkeLe~e- 88 (432)
T KOG2758|consen 18 LIFPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP------NALVE--KRTEVLAELKELEEE- 88 (432)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch------HHHHH--HHHHHHHHHHHHHHH-
Confidence 34445556666677777777777888888888888888888776321 110 11111 123333444444432
Q ss_pred CCCCHHHH--HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH---hhCCCCCCHH
Q 006364 454 VRPDSITF--LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELV---GQIPGGPGLS 527 (648)
Q Consensus 454 ~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~ 527 (648)
+.|=...+ -.++.+. ..-.+....++.+.+++++.|+ ..+.-....-.-.+|++..|...+ +.....|+..
T Consensus 89 v~piv~~le~Pd~~~~~---~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n 165 (432)
T KOG2758|consen 89 VAPIVKVLENPDLIAAL---RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN 165 (432)
T ss_pred HHHHHHHHcCHHHHHHH---HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh
Confidence 22211110 0112222 1223346778888889999998 777777777788899999998864 3444556653
Q ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 528 V----LQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 528 ~----~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
. |+.|.+-- -.-+++.|.+-+.++.+
T Consensus 166 ~lsalwGKlASEI-L~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 166 YLSALWGKLASEI-LTQNWDGALEDLTRLRE 195 (432)
T ss_pred hHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 3 44433322 23467777777766665
No 447
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.90 E-value=1.9e+02 Score=30.39 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=38.6
Q ss_pred HHHHHHhcCChHHHHHHHhhcC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 006364 296 LITMYARFESMQDSEKVFDELS---CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNA 364 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a 364 (648)
|.+...+.|...+|..++.+.. ...+.++-.+..++....+.++|++.|++..+..+.+...-+.++..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 4444445555555555544432 22344555666666667777777777777666444455555555443
No 448
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=6e+02 Score=27.84 Aligned_cols=571 Identities=11% Similarity=0.017 Sum_probs=253.9
Q ss_pred hHHHHHHHHHhCCCCCChhhH-HHHHHHhhcccChhhHhHHHHHHH-HhCCCCCcchHHHHHHHHHhCCChhHHHHHhcc
Q 006364 40 DALSFALRMNLIGVVFDAVTY-STALSFCLDHEGFLFGLQLHSLIV-KFGLDSEVYVGNALITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 117 (648)
+.+...+.|-+..-.|+..+- -.+-+.|.-.|++++|...--..- ...+.++...+..++.-+... -++.+.+.++.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~ 119 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKN 119 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcC
Confidence 444555555554444443333 222345666777777765433221 122445555555554333211 12333344432
Q ss_pred CCCC---C---cchHHHHHHHHHcCCCChHHHHHHHHHHH----------HCCCCCChhhHHHHHHHhcCCCC-hhHHHH
Q 006364 118 MPNK---D---SVSWNAILSGYTQDGDYGVEAILALIEMM----------RKGLRLDHVSFTSAASACGHEKN-LELGKQ 180 (648)
Q Consensus 118 ~~~~---~---~~~~~~li~~~~~~g~~~~~a~~~~~~m~----------~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~ 180 (648)
-.+. | ....+-+|..|...+ .+..|+.+.-+-. +....++ ..+.++..+....+ .+--.+
T Consensus 120 ~~~~~~iD~rL~~iv~rmi~kcl~d~-e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 120 PEQKSPIDQRLRDIVERMIQKCLDDN-EYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhhhh-HHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHH
Confidence 2211 1 123556666666666 5555554433322 1222222 23333433333222 333445
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchh--hHHHhc---C-ChhhHHHHHHHHHHCCCCCC
Q 006364 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVIS--WTTMIS---M-NREDAVSLFKEMRLDGVCPN 254 (648)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~---g-~~~~a~~~~~~m~~~g~~p~ 254 (648)
++..+++.=.+....-|-.+..+|.-..+.+.+.++++++.+.|... |...+. . ..+--..+.+.|... -..|
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d-~~~d 275 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPAD-DARD 275 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccc-cccc
Confidence 55555553322222334456777777888888888888887755322 222222 1 111111222333322 1112
Q ss_pred hhhHHHHHHHH-------------hcCCchHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHhcCChHHH-----HHHHhh
Q 006364 255 DVTFIGLIHAI-------------SIGNLVKEGRMIHGLCIKTNFLSEPSVCN-CLITMYARFESMQDS-----EKVFDE 315 (648)
Q Consensus 255 ~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a-----~~~~~~ 315 (648)
..+...+++.+ .+.++.+. .+++...+. +..+..++. .+.+++...|-..+- ..++.+
T Consensus 276 e~p~~kii~ILSGe~tik~~l~FL~~~N~tD~--~iL~~iK~s-~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~Wlsk 352 (929)
T KOG2062|consen 276 EKPMEKIISILSGEETIKLYLQFLLRHNNTDL--LILEEIKES-VRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSK 352 (929)
T ss_pred cChHHHHHHHhcCchHHHHHHHHHHHcCCchH--HHHHHHHHH-HHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhh
Confidence 22222222222 22222211 112222111 111112221 234555555543221 112222
Q ss_pred cCCCCcccHHHHH-HHHHhcCCcHHHHHHHHHhHhCCCCCHHHHH--HH--HHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 316 LSCREIISWNALI-SGYAQNGLSLAAVQAFFGVIKESKPNAYTFG--SV--LNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 316 ~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~--~l--l~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
..... -+++.. -+....|+..+|.+++.-...+..+....|. .. .-++.+.+ .-....+.+....+..-.+
T Consensus 353 AtNWa--KFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~--hG~~~~~yL~~~Lk~~~~e 428 (929)
T KOG2062|consen 353 ATNWA--KFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHAN--HGRGITDYLLQQLKTAENE 428 (929)
T ss_pred cchHh--hhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccC--cCccHHHHHHHHHHhccch
Confidence 11111 011111 1344567777787777665542111122221 11 11122222 2223445554444443333
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcC---CC-ChhHHH--HHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHH--
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQ---EK-SEFAWT--AIISALARHGDYESVMNQFKEMENKGV-RPDSITF-- 461 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~-~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-- 461 (648)
...+..+|.-+++..|.-+ .++|+.++ .. +.++=. .+..+++..|... .+.+++|..--. .--..+-
T Consensus 429 ~v~hG~cLGlGLa~mGSa~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RG 504 (929)
T KOG2062|consen 429 VVRHGACLGLGLAGMGSAN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRG 504 (929)
T ss_pred hhhhhhhhhccchhccccc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHH
Confidence 4444445555555444321 23333332 22 222222 1233444444322 233444443110 1111111
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH--HHHH
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLL--GACR 537 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~--~~~~ 537 (648)
..+--+|.--|+-++|..+.++|..+ -.|- ..-.-.+..+|+-.|+..-..+++.-....+|..+-++-. -++.
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheee
Confidence 12223455567777888899998755 2443 2223345567777787766666666655555555544433 3455
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEEecCC
Q 006364 538 IHGNVEMGERIADALMKMEPA--GSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGD 615 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f~~~~ 615 (648)
-..+.+.-..+.+.+.+...+ ..++-..|+-+|+-.|.. +|+.+++.|....+.-...-..|- -.+-..-..+
T Consensus 583 l~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~D~~~fVRQgAlIa----~amIm~Q~t~ 657 (929)
T KOG2062|consen 583 LFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-EAINLLEPLTSDPVDFVRQGALIA----LAMIMIQQTE 657 (929)
T ss_pred EecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhcChHHHHHHHHHHH----HHHHHHhccc
Confidence 667777777777777765432 234566778888888875 688898887642211000000000 0011112356
Q ss_pred CCCcChHHHHHHHHHHHH
Q 006364 616 NTHPRSEEIYRMAECLGS 633 (648)
Q Consensus 616 ~~~~~~~~i~~~l~~l~~ 633 (648)
...|....|.+.+.+...
T Consensus 658 ~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred ccCchHHHHHHHHHHHhh
Confidence 788999999888876553
No 449
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.51 E-value=1.3e+02 Score=28.18 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+=.++...++++.|.+..++.+.++|.++.-..--+-+|.+.|...-|..-++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 34456778888999999999999999999888888888999999888887777653
No 450
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.80 E-value=1.7e+02 Score=22.94 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHhhcC
Q 006364 296 LITMYARFESMQDSEKVFDELS 317 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~ 317 (648)
++.-|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444444555555555555543
No 451
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.29 E-value=5.2e+02 Score=26.69 Aligned_cols=206 Identities=15% Similarity=0.168 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHH--Hhhc----CCC-----------ChhHHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV--FNET----QEK-----------SEFAWTAIISALA 434 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--~~~~----~~~-----------~~~~~~~li~~~~ 434 (648)
..+...+....+...|....++.+|.-+..|.+.|....-... ++.+ ..+ +.+.+-...-+|.
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~y 111 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIFY 111 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheeee
Confidence 6677777777777777777777777777777777764432211 1111 111 1222222333444
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhcccCcHHHHHHHHH---HhHHhcCCCCChHHHHHHHHHHh
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDS------ITFLSVLTVCGRNGMIHKGRHLFD---SMLKDYHIEPSPDHYSCMVDMLG 505 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~---~m~~~~~~~p~~~~~~~l~~~~~ 505 (648)
.+..+..|+++....... +.|=. +|+..+. -+......++|+.++. +|.......|
T Consensus 112 h~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~-l~~~t~q~e~al~~l~vL~~~~~~~~~~~------------- 176 (696)
T KOG2471|consen 112 HHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDL-LAAETSQCEEALDYLNVLAEIEAEKRMKL------------- 176 (696)
T ss_pred eHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------
Confidence 455566666655554432 22211 2222211 1223334455554443 3322212222
Q ss_pred hcCCHHHHHHHHhhCC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 506 RVGRLEEAEELVGQIP----------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 506 ~~g~~~~A~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.|+...+-.+.+..+ ..|......--+.++....+...+.+-.+...-...+.+.....-++.+...|+
T Consensus 177 -~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn 255 (696)
T KOG2471|consen 177 -VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN 255 (696)
T ss_pred -cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc
Confidence 222222333333222 001111122223445555666666666666655556677777888899999999
Q ss_pred cHHHHHHHHHHhhCCCccCCc
Q 006364 576 WEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 576 ~~~a~~~~~~m~~~~~~~~~~ 596 (648)
+.+|.+++. ..++.+.+|
T Consensus 256 ~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 256 HPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred hHHHHHHHH---hcccccccC
Confidence 999999885 445555555
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.26 E-value=61 Score=22.39 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=17.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 006364 428 AIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
.+|.||.+.|++++|.+.++++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467888888888888888877754
No 453
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.03 E-value=2.5e+02 Score=22.88 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHh
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVG 518 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (648)
..++|..|.++ +|--. ..-|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667777555 66655 5566666777777777777777765
No 454
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.92 E-value=6e+02 Score=27.24 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV----GRLEEAEELVGQIPGGPGLSVLQSLLGACRIHG----NVEM 544 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~ 544 (648)
+.+.+...+..... .-+......+.+.|... .+++.|...+.....++ ....-.+.. +..+| ....
T Consensus 454 ~~~~~~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~-~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGY-MHEHGEGIKVLHL 527 (552)
T ss_pred chhHHHHHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhh-HHhcCcCcchhHH
Confidence 45555666655532 23344455555554433 24667777666655444 322222222 22222 1566
Q ss_pred HHHHHHHHHhcCC
Q 006364 545 GERIADALMKMEP 557 (648)
Q Consensus 545 a~~~~~~~~~~~p 557 (648)
|.+.++++.+.+.
T Consensus 528 a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 528 AKRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHHhcCc
Confidence 7777777766544
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.81 E-value=2.8e+02 Score=26.61 Aligned_cols=52 Identities=4% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHh
Q 006364 296 LITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
++..+.+.+++....+.+..+. .+..-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444442 223334556677788888888888877765
No 456
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.50 E-value=5.5e+02 Score=26.67 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=58.3
Q ss_pred CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 491 EPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC--RIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 491 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.|+ ...-+.+++-+-+.|-.++|...+.... .+|+...+..++..- ...-+..-+...|+.+..--..++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 454 3333556667777777888888777654 345666666666432 22234666777777777654467777766
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 006364 566 MSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~ 585 (648)
....-...|+.+.+-.++.+
T Consensus 536 y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHhhccCCCcccccHHHHH
Confidence 66555566766666555443
No 457
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.44 E-value=3.9e+02 Score=30.37 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHHHhCCChHHHHHHHhc
Q 006364 199 VLMSTYSKCEVTGDANKVFRR 219 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~ 219 (648)
..+...+..|+.+-+..+++.
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHHC
Confidence 344444555555555555543
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.39 E-value=5.2e+02 Score=26.38 Aligned_cols=112 Identities=15% Similarity=0.035 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHH---CCC-CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 237 EDAVSLFKEMRL---DGV-CPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 237 ~~a~~~~~~m~~---~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
++...+++.... .|+ ..+......++..+ .|+...+..+++.....+-..+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 445555555432 243 44444444444432 6888888877776654311111 1122222
Q ss_pred Hhhc---CCCCcccHHHHHHHHHh---cCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhc
Q 006364 313 FDEL---SCREIISWNALISGYAQ---NGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 313 ~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~ 366 (648)
+... ..++...+..+++++.+ .++.+.|+.++..|.. |..|....-..+..++.
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2221 11222334455555554 4788999999999988 76776555544444443
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.27 E-value=2.1e+02 Score=30.50 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhcccCcHH------HHHHHHHHhHHhcCCCCChHHHHH
Q 006364 428 AIISALARHGDYESVMNQFKEMENK--GVRPDSITFLSVLTVCGRNGMIH------KGRHLFDSMLKDYHIEPSPDHYSC 499 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~m~~~~~~~p~~~~~~~ 499 (648)
+|..+|..+|++..+.++++..... |-+.-...+|..++.+.+.|.++ .|.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777777777777777777777653 22222355666677777766542 333333333 24455666666
Q ss_pred HHHH
Q 006364 500 MVDM 503 (648)
Q Consensus 500 l~~~ 503 (648)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6554
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.11 E-value=1.9e+02 Score=25.00 Aligned_cols=62 Identities=10% Similarity=-0.006 Sum_probs=42.4
Q ss_pred HHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChh
Q 006364 47 RMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 47 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
.+...|++++..-. .++..+....+.-.|.++++.+.+.+...+..|-..-|+.+.+.|-+.
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34566777666554 445555555666788889999988887777766666677777777554
No 461
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=34.10 E-value=4e+02 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
.|+......++++.+.++.+.+..++|.+
T Consensus 225 ~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 225 RLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 34444555556666666665555555543
No 462
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=34.09 E-value=16 Score=36.37 Aligned_cols=178 Identities=14% Similarity=0.143 Sum_probs=101.3
Q ss_pred CCcchHHHHHHhhccCC-hHHHHHHHHH--------hCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcc
Q 006364 23 PDIVSWNTVLSGFEKSD-DALSFALRMN--------LIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVY 93 (648)
Q Consensus 23 p~~~~~~~ll~~~~~~~-~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 93 (648)
|+.-+.-.+|+-|.++. +.+-+|+-.. ..|+.||.++|.+-..+-.+......|+..+..++ ||..
T Consensus 372 pngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~ 446 (650)
T KOG4334|consen 372 PNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLR 446 (650)
T ss_pred CCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhc-----chhh
Confidence 44444555555555544 3333332111 23677888888777777667777788888887765 4332
Q ss_pred hHHH-HHH-HHHhCCChhHHHHHhccCCC--C----------CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCCh
Q 006364 94 VGNA-LIT-MYSRWGRLVEARRVFDEMPN--K----------DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDH 159 (648)
Q Consensus 94 ~~~~-li~-~~~~~g~~~~A~~~~~~~~~--~----------~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 159 (648)
.-.. .-+ .-...|.-..-+++|+.+.- | -...||.|..++.++- .+. -+.+-.+|...|-.-+.
T Consensus 447 ~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~-g~~-d~~ik~E~i~~~nqkse 524 (650)
T KOG4334|consen 447 VSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNL-GWN-DLVIKKEMIGNGNQKSE 524 (650)
T ss_pred hcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhc-CCc-ceeeeeeccCCCCccce
Confidence 2211 000 00112344556778887753 2 2235777777777665 332 23344455554444444
Q ss_pred hhHHH-HHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 006364 160 VSFTS-AASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 160 ~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 207 (648)
++... =...-+...+...++++-.+-+-.-+.|.+.+|.+|+.+|++.
T Consensus 525 ~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 525 VIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred eEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 33210 0011123345677888887777777899999999999999886
No 463
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.92 E-value=2.6e+02 Score=22.76 Aligned_cols=58 Identities=24% Similarity=0.180 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQ-SLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 551 (648)
..+-.++.-++.=.|..++|.++++.....+.-..+| .++..|....+-++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445555666666677777777777666444333333 355666666655555544443
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.60 E-value=3.9e+02 Score=24.71 Aligned_cols=161 Identities=9% Similarity=0.045 Sum_probs=82.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC-GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
++...-+.|++++++..++++...+...+..--+.+-.+| ...|....+++++.....+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 5566778888999999999998876666665555555555 2335555667776666544222222 2222223222211
Q ss_pred ------CCHHHHHHHHhhCCCC----CCHH-HHHHHHHHHH----HcC-------CHHHHHHHHHHHHh-----cCCCCc
Q 006364 508 ------GRLEEAEELVGQIPGG----PGLS-VLQSLLGACR----IHG-------NVEMGERIADALMK-----MEPAGS 560 (648)
Q Consensus 508 ------g~~~~A~~~~~~~~~~----~~~~-~~~~l~~~~~----~~g-------~~~~a~~~~~~~~~-----~~p~~~ 560 (648)
.--.+...+++....+ +... .|..+-+-|. ... -.+.|.++|+.+.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1124555666654311 1111 2222221111 111 23667777777764 345554
Q ss_pred hhHHHHHH-----HHHhcCCcHHHHHHHHHHhhCCC
Q 006364 561 GSYVLMSN-----LYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 561 ~~~~~l~~-----~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
. +..|+- .|...|+.++|.++-+..-+..+
T Consensus 166 ~-rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 L-RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp H-HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3 322222 34568999999999887665443
No 465
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.39 E-value=1.7e+02 Score=23.79 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=29.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
.+...-+.+.|+++|+.+++..|+....+..++..+...
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 333445678899999999999999999999998877653
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.17 E-value=1.5e+02 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=20.4
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
+-.|..+..|+-+|++.|+-+.+.+-|+.
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 55566777777777777777777776653
No 467
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.96 E-value=7.5e+02 Score=27.80 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=93.9
Q ss_pred HHhcCCcHHHHHHHHHhHhCC-CCCHH-------HHHHHHHHhccCchhhHHHHHHHHHHHHHh----CCCCchhHHHHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKES-KPNAY-------TFGSVLNAVGAAEDISLKHGQRCHSHIIKV----GLDSDPIVGSAL 398 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~-~p~~~-------~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 398 (648)
.....++++|..++.+..... .|+.. .+.. +.+-......+++.+..+-+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a-L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA-LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345678888888888777622 22211 1222 2222221112667777766665542 234455666777
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCC----Chh---HHHHHHH--HHHhCCCh--HHHHHHHHHHHHC--CCCC----CHHHH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEK----SEF---AWTAIIS--ALARHGDY--ESVMNQFKEMENK--GVRP----DSITF 461 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~li~--~~~~~g~~--~~A~~~~~~m~~~--g~~p----~~~t~ 461 (648)
..+..-.|++++|..+.....+. ++. .|..+.. .+...|+. .+...-|...... +-+| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77777888888888876654432 433 3333322 24445532 2222333333221 1112 12344
Q ss_pred HHHHHHhccc-CcHHHHHHHHHHhHHhcCCCCChHHH--HHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 462 LSVLTVCGRN-GMIHKGRHLFDSMLKDYHIEPSPDHY--SCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 462 ~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
..++.++.+. +...++..-++-- ..+...|-...+ .+|+.+....|++++|...++++.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~-~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVG-SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhh-hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555441 1122222222211 111222322222 367788888899999888877654
No 468
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.57 E-value=77 Score=30.11 Aligned_cols=73 Identities=8% Similarity=0.010 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQS-LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+..|...+.-..+.|.+.+.-.++.+.. .+.++..|-. --.-+..++|++.+..++.+.++++|++|..|...
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4444444444444455555555554433 2345555533 22335678899999999999999999999876543
No 469
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.06 E-value=5.4e+02 Score=25.88 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=5.3
Q ss_pred hhHHHHHHH
Q 006364 561 GSYVLMSNL 569 (648)
Q Consensus 561 ~~~~~l~~~ 569 (648)
..|..|.++
T Consensus 319 ~~Yf~Lt~A 327 (493)
T KOG2581|consen 319 RPYFKLTQA 327 (493)
T ss_pred HHHHHHHHH
Confidence 356666655
No 470
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.78 E-value=6.8e+02 Score=26.93 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhcCCCC-cccHHHHHHHHHhcCCcHHHHHHHHHhHh
Q 006364 291 SVCNCLITMYARFESMQDSEKVFDELSCRE-IISWNALISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 291 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
..+..|+.... .=+.+.-.++++++.. . ...|..++++....|-.....-+.+.+..
T Consensus 311 ~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 311 AKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 34444554433 2344555555555543 2 45666677777777754444433333333
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.33 E-value=1.6e+02 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
...-|..-|.+.|++++|.++++.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345566677777777777777665
No 472
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.29 E-value=4.1e+02 Score=24.26 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRP---DSITFL--SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSC 499 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 499 (648)
-.|.||--|.-+..+.+|-+.|.. +.|++| |..++. .-+......|++++|++........ -+.-|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 345555555555555555555532 334444 222322 3344556777777777777766433 23333322222
Q ss_pred HHH----HHhhcCCHHHHHHHHhh
Q 006364 500 MVD----MLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 500 l~~----~~~~~g~~~~A~~~~~~ 519 (648)
|.. -+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 24577778888877765
No 473
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.20 E-value=2.4e+02 Score=23.66 Aligned_cols=63 Identities=8% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcc-cChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChh
Q 006364 46 LRMNLIGVVFDAVTYSTALSFCLDH-EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 46 ~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566777665544 344444443 457788899999988886667666666677777777553
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.40 E-value=5.7e+02 Score=25.65 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=20.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
+..+.+.+++..|.++|+++......|+...
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 3455667778888888888877655555444
No 475
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.32 E-value=1.7e+02 Score=31.07 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.+.|--.|....+.+.|.++++++.+.+|.++-.-..+..+....|+-++|..+....+..
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3444455556667777777777777777777666666666666677777777766665543
No 476
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=29.96 E-value=5e+02 Score=24.84 Aligned_cols=67 Identities=6% Similarity=0.004 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH----HhcCCCCC
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML----KDYHIEPS 493 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~ 493 (648)
.+.....|...|.+.+|.++.++.... -+.+...+-.+++.+...||--.+...++.+. ..+|+.-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 344456677778888888777777663 13345566667777777777666666555543 23455554
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.18 E-value=1e+02 Score=29.40 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006364 126 WNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTS 164 (648)
Q Consensus 126 ~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 164 (648)
||.-|....+.| +.++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~g-Di~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKG-DVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 678888888888 88888888888888887655555543
No 478
>PRK00971 glutaminase; Provisional
Probab=29.09 E-value=3.9e+02 Score=25.84 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=43.7
Q ss_pred HHHHHHHHHCCCCC-C-hhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhCCChHHHH
Q 006364 144 ILALIEMMRKGLRL-D-HVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTH-------VSVGNVLMSTYSKCEVTGDAN 214 (648)
Q Consensus 144 ~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~ 214 (648)
..+-.-|+..|.-+ | ..+...-.+.|+-....+..-.+...+-..|+.|. ......+......||.+|.+-
T Consensus 168 ~Ala~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TcGmYD~SG 247 (307)
T PRK00971 168 AAIAYLMKSFGNIENDVETVLDTYFHQCALEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTCGMYDASG 247 (307)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchH
Confidence 33444455555444 3 23444455556655555555555555555666552 344455666777888888877
Q ss_pred HHHhcC
Q 006364 215 KVFRRM 220 (648)
Q Consensus 215 ~~~~~~ 220 (648)
+..-+.
T Consensus 248 ~fa~~V 253 (307)
T PRK00971 248 EFAYRV 253 (307)
T ss_pred HHHHHc
Confidence 765544
No 479
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.65 E-value=2.9e+02 Score=21.68 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=10.7
Q ss_pred HHHHHHhcCChHHHHHHHhhcC
Q 006364 296 LITMYARFESMQDSEKVFDELS 317 (648)
Q Consensus 296 li~~~~~~g~~~~a~~~~~~~~ 317 (648)
++.-|...++.++|...+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 3444444555555555554444
No 480
>PRK14015 pepN aminopeptidase N; Provisional
Probab=28.21 E-value=9.6e+02 Score=27.53 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh
Q 006364 427 TAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLG 505 (648)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~ 505 (648)
|..+.-++..+..+......++.... .+..--.+.|.++.+.+. .+....++...+++.-.|- ..-|-.+...-.
T Consensus 686 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 761 (875)
T PRK14015 686 NVCLSYLAAADDEEAAELAEAQFDQA---DNMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSP 761 (875)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCC
Confidence 33444444444333322234444433 233223334444443332 2223333333333444565 445554443333
Q ss_pred hcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 506 RVGRLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGN-------VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 506 ~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
..+-++...++...-... .++.-.++|+++++..+- -..-.-+.+.++++++.||.+-..|+..+.+-.+++
T Consensus 762 ~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~ 841 (875)
T PRK14015 762 APDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYD 841 (875)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccC
Confidence 333344444444332221 344457889998864432 233455677888999999999999999999888887
Q ss_pred HHHH
Q 006364 578 MVAI 581 (648)
Q Consensus 578 ~a~~ 581 (648)
+..+
T Consensus 842 ~~r~ 845 (875)
T PRK14015 842 PKRQ 845 (875)
T ss_pred HHHH
Confidence 7655
No 481
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.17 E-value=2.5e+02 Score=20.87 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=29.1
Q ss_pred hhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHH
Q 006364 403 GKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESV 442 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 442 (648)
+...+.+.|.++++.++.++..+|.+...++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888888888888888777665444
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.72 E-value=5.9e+02 Score=24.92 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc------ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCG------RNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
-+++++.++++....+. |.....-..|.+|- ..-+|..-..+|+.+. .+.|+ +.+.|--+- ++...-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVA-la~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVA-LAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHH-HHHhhhH
Confidence 35778888888877754 88888877777762 2346777778888775 34676 444444333 3333345
Q ss_pred HHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 511 EEAEELVGQIPGGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 511 ~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
+.++..++.....|. ...+..=...+.+.|..++|...|++++.+.++...-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 666666666554422 2233444567889999999999999999988765443
No 483
>PHA02874 ankyrin repeat protein; Provisional
Probab=27.69 E-value=6.8e+02 Score=25.64 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=67.0
Q ss_pred HHHHhhcccChhhHhHHHHHHHHhCCCCC--cchHHHHHHHHHhCCChhHHHHHhccCCCC---CcchHHHHHHHHHcCC
Q 006364 63 ALSFCLDHEGFLFGLQLHSLIVKFGLDSE--VYVGNALITMYSRWGRLVEARRVFDEMPNK---DSVSWNAILSGYTQDG 137 (648)
Q Consensus 63 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 137 (648)
.+..++..|+++....++.. .+...+ ..-..+.+...++.|+.+-+..+++.-... +...++.+..+ ++.|
T Consensus 4 ~l~~ai~~gd~~~v~~ll~~---~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A-~~~~ 79 (434)
T PHA02874 4 DLRMCIYSGDIEAIEKIIKN---KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA-IKIG 79 (434)
T ss_pred HHHHHHhcCCHHHHHHHHHc---CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcC
Confidence 45566677887766555532 121111 111223444556778888888877654433 22333444433 3444
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcc--hHHHHHHHHHhCCChHHHHH
Q 006364 138 DYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVS--VGNVLMSTYSKCEVTGDANK 215 (648)
Q Consensus 138 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~ 215 (648)
.. ++.+.+.+.|..++..... ... .++...+.+.|..++.. .....+...+..|+.+-+..
T Consensus 80 -~~----~iv~~Ll~~g~~~~~~~~~--------~~~----~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~ 142 (434)
T PHA02874 80 -AH----DIIKLLIDNGVDTSILPIP--------CIE----KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM 142 (434)
T ss_pred -CH----HHHHHHHHCCCCCCcchhc--------cCC----HHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHH
Confidence 33 3444555566555432211 111 23455566666655432 12334455566666665555
Q ss_pred HHhc
Q 006364 216 VFRR 219 (648)
Q Consensus 216 ~~~~ 219 (648)
+++.
T Consensus 143 Ll~~ 146 (434)
T PHA02874 143 LFEY 146 (434)
T ss_pred HHhC
Confidence 5543
No 484
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.48 E-value=8.3e+02 Score=26.56 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHHHHHH
Q 006364 523 GPGLSVLQSLLGACRI 538 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~ 538 (648)
.|+...+..+......
T Consensus 588 ~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 588 NPSPSVLQRIAQSLWN 603 (618)
T ss_dssp ---HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhh
Confidence 4566655555544433
No 485
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.30 E-value=6.1e+02 Score=26.69 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC--Cc---ccHHHHHHHHHhcCCcHHHHHHHHHhHh
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR--EI---ISWNALISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (648)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+...+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999998622 12 2333444444555444455555555544
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.68 E-value=5.3e+02 Score=27.77 Aligned_cols=47 Identities=15% Similarity=-0.005 Sum_probs=29.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCh
Q 006364 260 GLIHAISIGNLVKEGRMIHGLCIKTN--FLSEPSVCNCLITMYARFESM 306 (648)
Q Consensus 260 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 306 (648)
+++.+|...|++..+.++++.+.... -+.=...+|..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 77888888888888888877776542 111223355555555566653
No 487
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.43 E-value=3.3e+02 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=11.7
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 432 ALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
.+.+.++.-.|.++|+++.+.+...+..|
T Consensus 29 ~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 29 LLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33333333444444444444433333333
No 488
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.42 E-value=1.8e+02 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=9.9
Q ss_pred HHhcccCcHHHHHHHHHHh
Q 006364 466 TVCGRNGMIHKGRHLFDSM 484 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m 484 (648)
.-|.+.|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344555555555555554
No 489
>PRK12357 glutaminase; Reviewed
Probab=25.85 E-value=6.3e+02 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=10.2
Q ss_pred CCCCCChhhHHHHHH
Q 006364 249 DGVCPNDVTFIGLIH 263 (648)
Q Consensus 249 ~g~~p~~~~~~~ll~ 263 (648)
-|..|+...||+++.
T Consensus 96 VG~EPSG~~FNSi~~ 110 (326)
T PRK12357 96 VDVEPTGDAFNSIIR 110 (326)
T ss_pred hCCCCCCCCcchhhh
Confidence 366777777777653
No 490
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.73 E-value=1.6e+02 Score=18.02 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+|..|+.+-...+++++|.+=+++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~a 27 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKA 27 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46788888888888888887766554
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.56 E-value=2.8e+02 Score=24.05 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=24.2
Q ss_pred HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006364 451 NKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 451 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 510 (648)
..|++++..-. .++..+...+..-.|.++++.+.+. +..++..|.-.-++.+.+.|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 34554443322 2233333333344555555555444 3334422222223455555543
No 492
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.51 E-value=2.2e+02 Score=20.87 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=10.4
Q ss_pred HHHHHHhCCChhHHHHHhccC
Q 006364 98 LITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~ 118 (648)
.+...+..|+.+-+..+++.-
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~~g 49 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLENG 49 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 344444555555555555543
No 493
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.87 E-value=4.9e+02 Score=23.09 Aligned_cols=57 Identities=5% Similarity=0.079 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh
Q 006364 319 REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV 386 (648)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~ 386 (648)
+..+.|..+..+-++.-+.+++-+.|-- ..=.+++-.|.+.. ++..+..+++.+.+.
T Consensus 105 k~~vPFceFAetV~k~~q~~e~dK~~LG---------RiGiS~m~~Yhk~~--qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 105 KPGVPFCEFAETVCKDPQNDEVDKTLLG---------RIGISLMYSYHKTL--QWSKGRKVLDKLHEL 161 (233)
T ss_pred cCCCCHHHHHHHHhcCCccchhhhhhhh---------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3345555555555554444443333211 11123444444444 666666666665543
No 494
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.72 E-value=5.6e+02 Score=23.65 Aligned_cols=89 Identities=8% Similarity=0.115 Sum_probs=47.7
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHH
Q 006364 398 LLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKG 477 (648)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 477 (648)
-+..|.+.-++.-|-..++++.+|=.. .+.+--|.+..+.+---.+.+-....+++-+......++ +...||+.+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 445566666666666666666555111 111222333333333333344344455555554444443 5667888888
Q ss_pred HHHHHHhHHhcCC
Q 006364 478 RHLFDSMLKDYHI 490 (648)
Q Consensus 478 ~~~~~~m~~~~~~ 490 (648)
+..++.....+|.
T Consensus 212 lNnLQst~~g~g~ 224 (333)
T KOG0991|consen 212 LNNLQSTVNGFGL 224 (333)
T ss_pred HHHHHHHhccccc
Confidence 8888877665554
No 495
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.05 E-value=2.6e+02 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
+.-|..+...|.|.+++.+|+..+-+
T Consensus 318 vYPYty~gg~~yR~~~~~eA~~~Wa~ 343 (618)
T PF05053_consen 318 VYPYTYLGGYYYRHKRYREALRSWAE 343 (618)
T ss_dssp SHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cccceehhhHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777666543
No 496
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.80 E-value=5.3e+02 Score=23.04 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=20.5
Q ss_pred hhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006364 403 GKRGSIFESQRVFNETQEKSEFA--WTAIISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
...|.+++|+..++....++-.. ...-...+...|+-++|..-|++..+.
T Consensus 137 ~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 137 LQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444444444444444332111 222223444444444444444444443
No 497
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.78 E-value=4.4e+02 Score=26.68 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH--------hcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 532 LLGACRIHGNVEMGERIADALM--------KMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
|++..+-.||+..|.++++-+. ...+-..++|..++-+|.-.+|+.+|.+.+...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566665555544331 111234556777777777777777777777654
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.56 E-value=1.9e+02 Score=20.24 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 421 KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
+....++.++..++...-.+.++..+.++...|. .+..+|.--++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3344455555555555555666666666666553 233444433333
No 499
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.55 E-value=6.9e+02 Score=24.27 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhcCCCCCc------------hhhHHHhc--CChhhHHHHHHHHHHCCCCCChhhHHHH
Q 006364 196 VGNVLMSTYSKCEVTGDANKVFRRMHDRNV------------ISWTTMIS--MNREDAVSLFKEMRLDGVCPNDVTFIGL 261 (648)
Q Consensus 196 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~--g~~~~a~~~~~~m~~~g~~p~~~~~~~l 261 (648)
++-.+-+.|.++++..+|..+..+..-+-. +.|...+. +++-+|-+-+.++....+.|...-...+
T Consensus 146 l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL 225 (399)
T KOG1497|consen 146 LCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEAL 225 (399)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 445566777788877777776655432111 11222222 5555666666666555554443333333
Q ss_pred HHHH---hcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 262 IHAI---SIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR 302 (648)
Q Consensus 262 l~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 302 (648)
-++. .-.+--..-.+++..+.+..-.+....|..+-.+|..
T Consensus 226 ~~a~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~ileKmyl~ 269 (399)
T KOG1497|consen 226 KKALQCTLLASAGPQRSRMLATLFKDERCQKLPAYGILEKMYLE 269 (399)
T ss_pred HHhHhheeecCCChHHHHHHHHHhcCcccccccchHHHHHHHHH
Confidence 2221 1111122223333333333333444455555555544
No 500
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.45 E-value=1.4e+02 Score=17.52 Aligned_cols=21 Identities=10% Similarity=0.377 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH
Q 006364 439 YESVMNQFKEMENKGVRPDSITF 461 (648)
Q Consensus 439 ~~~A~~~~~~m~~~g~~p~~~t~ 461 (648)
++.|..+|++... +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 3445555555444 23444444
Done!