Query 006364
Match_columns 648
No_of_seqs 685 out of 3531
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 23:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-40 6.5E-45 356.9 37.9 496 5-571 64-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-40 7.4E-45 356.5 37.2 475 101-589 62-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.4E-28 4.9E-33 252.8 20.5 215 40-303 8-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.6E-27 5.5E-32 245.0 22.5 185 322-507 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-24 5.5E-29 219.3 39.5 313 254-575 66-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.9E-28 213.0 42.0 344 234-588 13-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4.2E-26 206.1 32.6 425 125-588 8-477 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.6E-26 202.9 29.9 307 254-569 25-372 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.8E-21 2E-25 200.9 29.0 452 58-567 7-490 (514)
10 3fp2_A TPR repeat-containing p 99.9 8.6E-20 2.9E-24 193.1 34.3 421 124-588 26-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.5E-19 5.2E-24 186.6 32.2 296 287-589 23-358 (450)
12 3fp2_A TPR repeat-containing p 99.8 1.8E-18 6.1E-23 183.0 31.8 441 57-564 25-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.6E-17 8.7E-22 164.1 33.8 304 255-588 3-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.9E-17 6.6E-22 165.0 32.2 308 234-573 17-353 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 5.2E-15 1.8E-19 161.1 48.5 535 4-583 617-1339(1630)
16 3hym_B Cell division cycle pro 99.8 7.1E-17 2.4E-21 158.9 29.1 284 290-576 22-321 (330)
17 3hym_B Cell division cycle pro 99.8 8.9E-17 3E-21 158.2 27.8 262 319-587 20-297 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 2.8E-14 9.7E-19 155.4 48.4 378 161-582 987-1377(1630)
19 1fch_A Peroxisomal targeting s 99.8 4.3E-17 1.5E-21 163.2 23.7 279 300-584 35-354 (368)
20 1b89_A Protein (clathrin heavy 99.8 4.8E-17 1.7E-21 159.0 22.6 341 104-520 15-369 (449)
21 4eqf_A PEX5-related protein; a 99.7 1.3E-16 4.4E-21 159.6 21.8 260 320-585 64-352 (365)
22 1b89_A Protein (clathrin heavy 99.7 1.7E-16 5.9E-21 155.1 21.3 342 206-586 15-369 (449)
23 3mkr_A Coatomer subunit epsilo 99.7 3E-15 1E-19 143.5 28.4 267 299-581 8-286 (291)
24 2ooe_A Cleavage stimulation fa 99.7 2.7E-14 9.4E-19 150.2 38.3 403 158-589 12-492 (530)
25 2ooe_A Cleavage stimulation fa 99.7 4.7E-15 1.6E-19 156.1 31.8 400 122-558 12-495 (530)
26 2xm6_A Protein corresponding t 99.7 1.8E-14 6.3E-19 149.9 35.4 300 256-572 112-452 (490)
27 4eqf_A PEX5-related protein; a 99.7 4E-16 1.4E-20 156.0 20.9 230 354-588 64-309 (365)
28 1fch_A Peroxisomal targeting s 99.7 6.9E-16 2.4E-20 154.4 22.5 304 304-636 15-344 (368)
29 3cv0_A Peroxisome targeting si 99.7 7.3E-16 2.5E-20 151.4 22.0 256 323-585 23-311 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.2E-22 175.2 9.0 132 388-520 123-262 (1134)
31 4g1t_A Interferon-induced prot 99.7 1.3E-14 4.4E-19 150.6 29.3 373 193-600 50-470 (472)
32 2xm6_A Protein corresponding t 99.7 1.8E-13 6.3E-18 142.3 37.8 336 234-591 57-434 (490)
33 3mkr_A Coatomer subunit epsilo 99.7 4.1E-15 1.4E-19 142.6 23.2 245 328-588 6-263 (291)
34 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.3E-22 174.6 5.0 129 92-221 127-263 (1134)
35 2pl2_A Hypothetical conserved 99.6 1.2E-14 4.1E-19 133.0 19.9 192 389-586 2-211 (217)
36 3cv0_A Peroxisome targeting si 99.6 1E-13 3.6E-18 135.9 26.7 272 255-555 21-315 (327)
37 3uq3_A Heat shock protein STI1 99.6 5.3E-14 1.8E-18 132.8 22.0 212 361-588 11-235 (258)
38 4g1t_A Interferon-induced prot 99.6 1.4E-13 4.8E-18 142.7 27.2 341 194-567 94-471 (472)
39 3uq3_A Heat shock protein STI1 99.6 8.4E-14 2.9E-18 131.3 19.2 233 323-569 7-256 (258)
40 3u4t_A TPR repeat-containing p 99.6 2.6E-13 8.8E-18 129.2 20.1 243 293-574 6-269 (272)
41 2ho1_A Type 4 fimbrial biogene 99.5 8.2E-13 2.8E-17 124.1 22.0 196 392-589 37-238 (252)
42 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.1E-13 1.7E-17 127.4 20.4 239 334-583 18-269 (275)
43 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.5E-17 120.2 22.4 196 391-588 7-210 (225)
44 2q7f_A YRRB protein; TPR, prot 99.5 5.1E-13 1.8E-17 124.7 17.6 195 390-588 21-221 (243)
45 1ouv_A Conserved hypothetical 99.5 1E-11 3.5E-16 118.2 25.6 189 393-590 39-252 (273)
46 3vtx_A MAMA; tetratricopeptide 99.5 4.3E-12 1.5E-16 112.7 20.1 163 422-589 4-170 (184)
47 2h6f_A Protein farnesyltransfe 99.5 3.8E-12 1.3E-16 126.1 21.6 244 322-573 98-366 (382)
48 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-12 5.7E-17 121.2 18.1 212 322-574 24-241 (243)
49 3e4b_A ALGK; tetratricopeptide 99.5 6.5E-12 2.2E-16 128.5 23.7 333 234-590 17-388 (452)
50 1ouv_A Conserved hypothetical 99.5 1.6E-11 5.5E-16 116.8 24.5 226 322-561 7-257 (273)
51 2ho1_A Type 4 fimbrial biogene 99.5 1E-11 3.5E-16 116.6 22.7 205 321-565 37-248 (252)
52 4abn_A Tetratricopeptide repea 99.4 2.5E-12 8.5E-17 132.5 19.2 208 372-585 83-317 (474)
53 2vq2_A PILW, putative fimbrial 99.4 1.9E-11 6.6E-16 112.3 23.3 172 392-566 42-222 (225)
54 2pl2_A Hypothetical conserved 99.4 6.1E-12 2.1E-16 114.9 19.5 193 287-521 2-212 (217)
55 3u4t_A TPR repeat-containing p 99.4 1.1E-11 3.6E-16 118.0 21.6 213 372-589 18-250 (272)
56 3e4b_A ALGK; tetratricopeptide 99.4 2.6E-11 9E-16 124.0 24.9 363 169-588 13-420 (452)
57 3sf4_A G-protein-signaling mod 99.4 2.9E-12 9.9E-17 129.8 16.3 265 289-586 8-333 (406)
58 2h6f_A Protein farnesyltransfe 99.4 8.1E-12 2.8E-16 123.8 18.9 223 355-586 97-344 (382)
59 4a1s_A PINS, partner of inscut 99.4 2.1E-12 7E-17 131.2 14.8 263 294-588 52-371 (411)
60 3sf4_A G-protein-signaling mod 99.4 1E-11 3.5E-16 125.7 19.4 291 253-577 7-364 (406)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.8E-11 6.1E-16 116.5 19.3 213 372-589 20-244 (275)
62 4gyw_A UDP-N-acetylglucosamine 99.4 9.4E-12 3.2E-16 133.3 18.7 160 423-587 9-172 (723)
63 3ro2_A PINS homolog, G-protein 99.4 4.2E-12 1.4E-16 124.7 14.7 198 392-589 83-332 (338)
64 3vtx_A MAMA; tetratricopeptide 99.4 2.1E-11 7.1E-16 108.2 17.2 167 390-560 3-175 (184)
65 2ond_A Cleavage stimulation fa 99.3 1.9E-10 6.4E-15 111.4 24.1 218 338-561 33-276 (308)
66 3as5_A MAMA; tetratricopeptide 99.3 5.5E-11 1.9E-15 105.4 17.2 159 426-588 11-172 (186)
67 4e6h_A MRNA 3'-END-processing 99.3 4.4E-09 1.5E-13 111.3 34.1 216 339-561 327-576 (679)
68 4i17_A Hypothetical protein; T 99.3 6.6E-11 2.3E-15 109.1 17.6 186 391-588 6-208 (228)
69 4a1s_A PINS, partner of inscut 99.3 1.7E-11 5.8E-16 124.4 12.9 268 256-557 49-374 (411)
70 3ro2_A PINS homolog, G-protein 99.3 7.4E-11 2.5E-15 115.7 16.7 267 261-558 11-335 (338)
71 3nf1_A KLC 1, kinesin light ch 99.3 5.5E-11 1.9E-15 115.3 15.3 233 354-588 26-306 (311)
72 2ond_A Cleavage stimulation fa 99.3 5.2E-10 1.8E-14 108.3 21.3 211 374-590 33-271 (308)
73 4i17_A Hypothetical protein; T 99.2 3.3E-10 1.1E-14 104.4 18.2 207 352-572 4-226 (228)
74 3as5_A MAMA; tetratricopeptide 99.2 6.3E-10 2.1E-14 98.4 19.1 167 392-562 8-180 (186)
75 3ulq_A Response regulator aspa 99.2 7.6E-10 2.6E-14 111.0 21.9 163 425-588 186-367 (383)
76 4abn_A Tetratricopeptide repea 99.2 1.5E-10 5.1E-15 119.2 16.9 177 407-588 83-286 (474)
77 3nf1_A KLC 1, kinesin light ch 99.2 5.2E-11 1.8E-15 115.5 11.4 240 290-558 27-310 (311)
78 3ulq_A Response regulator aspa 99.2 2.4E-09 8.3E-14 107.3 21.6 164 393-556 185-369 (383)
79 1hz4_A MALT regulatory protein 99.2 1.2E-08 4.2E-13 101.7 26.5 194 395-588 96-321 (373)
80 3q15_A PSP28, response regulat 99.2 9.2E-09 3.2E-13 102.8 25.3 162 425-587 184-363 (378)
81 4e6h_A MRNA 3'-END-processing 99.1 6.4E-08 2.2E-12 102.5 31.6 211 322-536 344-584 (679)
82 3q15_A PSP28, response regulat 99.1 1.8E-09 6.1E-14 108.0 18.7 303 251-555 6-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.1 9.4E-10 3.2E-14 117.9 16.0 162 391-557 8-176 (723)
84 4ga2_A E3 SUMO-protein ligase 99.1 1.8E-10 6.2E-15 98.0 7.6 138 433-575 7-149 (150)
85 3qky_A Outer membrane assembly 99.1 4.8E-09 1.6E-13 98.8 17.9 180 391-588 14-223 (261)
86 3edt_B KLC 2, kinesin light ch 99.1 1.8E-09 6.1E-14 102.8 15.2 216 373-588 24-280 (283)
87 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.6E-14 104.4 14.2 198 373-585 33-265 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.3E-08 4.5E-13 93.2 18.4 180 392-591 4-215 (225)
89 2fo7_A Synthetic consensus TPR 99.0 7.5E-09 2.6E-13 85.8 14.8 123 463-588 6-131 (136)
90 1hz4_A MALT regulatory protein 99.0 3.3E-08 1.1E-12 98.5 21.1 262 264-557 23-324 (373)
91 2pzi_A Probable serine/threoni 99.0 2.9E-09 1E-13 114.7 13.5 167 403-575 402-583 (681)
92 3qky_A Outer membrane assembly 99.0 1.7E-08 5.9E-13 94.9 17.0 204 352-578 12-250 (261)
93 4ga2_A E3 SUMO-protein ligase 99.0 2.4E-09 8.3E-14 90.9 9.9 121 464-587 3-127 (150)
94 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.6E-13 82.9 15.6 130 425-558 3-135 (136)
95 3qou_A Protein YBBN; thioredox 99.0 1.8E-08 6.1E-13 96.1 16.8 173 409-586 103-281 (287)
96 3mv2_B Coatomer subunit epsilo 99.0 7.3E-08 2.5E-12 90.3 20.2 241 300-563 23-290 (310)
97 2vgx_A Chaperone SYCD; alterna 98.9 5.8E-09 2E-13 88.3 11.2 100 489-588 15-117 (148)
98 3gyz_A Chaperone protein IPGC; 98.9 7.8E-09 2.7E-13 87.3 11.6 101 489-589 30-133 (151)
99 3edt_B KLC 2, kinesin light ch 98.9 4.9E-09 1.7E-13 99.8 11.3 222 332-555 12-281 (283)
100 3rjv_A Putative SEL1 repeat pr 98.9 1.3E-07 4.3E-12 85.6 19.4 172 411-591 5-199 (212)
101 3mv2_B Coatomer subunit epsilo 98.9 1.6E-07 5.4E-12 88.1 19.8 174 411-589 85-282 (310)
102 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.1E-13 105.8 15.4 158 405-567 2-169 (568)
103 4gco_A Protein STI-1; structur 98.9 1.9E-08 6.4E-13 82.3 11.0 98 490-587 8-108 (126)
104 1qqe_A Vesicular transport pro 98.8 4E-08 1.4E-12 94.1 14.7 171 407-588 32-227 (292)
105 2r5s_A Uncharacterized protein 98.8 2.5E-08 8.6E-13 87.3 12.1 154 429-587 12-171 (176)
106 4gco_A Protein STI-1; structur 98.8 5.1E-08 1.8E-12 79.7 12.7 114 454-570 8-125 (126)
107 2pzi_A Probable serine/threoni 98.8 1.9E-08 6.4E-13 108.4 12.5 149 434-587 402-561 (681)
108 2vsy_A XCC0866; transferase, g 98.8 7.7E-08 2.6E-12 101.8 16.6 144 372-520 4-154 (568)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-07 4.7E-12 91.0 16.1 219 334-582 4-254 (307)
110 3urz_A Uncharacterized protein 98.8 1.1E-07 3.9E-12 85.6 14.6 156 399-559 11-190 (208)
111 3u3w_A Transcriptional activat 98.8 3.8E-07 1.3E-11 87.3 18.6 159 429-587 81-264 (293)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.2E-07 7.7E-12 84.1 15.5 122 463-589 11-150 (213)
113 2uy1_A Cleavage stimulation fa 98.7 1.1E-05 3.9E-10 82.7 29.2 203 338-554 196-412 (493)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.5E-07 1.2E-11 83.6 16.2 186 354-562 3-220 (225)
115 3urz_A Uncharacterized protein 98.7 2.1E-07 7.3E-12 83.9 14.1 157 426-588 7-185 (208)
116 2qfc_A PLCR protein; TPR, HTH, 98.7 7.1E-07 2.4E-11 85.4 18.7 163 425-587 77-264 (293)
117 3qou_A Protein YBBN; thioredox 98.7 2.5E-07 8.7E-12 88.1 14.9 132 455-589 114-248 (287)
118 2ifu_A Gamma-SNAP; membrane fu 98.7 1.9E-07 6.6E-12 90.0 14.2 194 372-587 6-222 (307)
119 1a17_A Serine/threonine protei 98.7 3E-07 1E-11 79.3 14.1 125 460-587 15-144 (166)
120 1na0_A Designed protein CTPR3; 98.7 3.4E-07 1.1E-11 74.4 13.6 113 459-574 10-125 (125)
121 2xcb_A PCRH, regulatory protei 98.7 1.5E-07 5.2E-12 78.9 11.6 100 489-588 12-114 (142)
122 2vyi_A SGTA protein; chaperone 98.7 2.7E-07 9.2E-12 75.7 12.8 116 458-576 12-130 (131)
123 2lni_A Stress-induced-phosphop 98.7 2.5E-07 8.5E-12 76.3 12.4 114 459-575 17-133 (133)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.1E-07 1.7E-11 81.7 15.1 144 396-559 10-154 (213)
125 3rjv_A Putative SEL1 repeat pr 98.7 1.1E-06 3.9E-11 79.3 17.3 174 375-558 4-200 (212)
126 3u3w_A Transcriptional activat 98.6 3.9E-06 1.3E-10 80.2 21.9 201 344-555 34-266 (293)
127 3dra_A Protein farnesyltransfe 98.6 5.2E-06 1.8E-10 78.7 22.1 147 437-587 124-285 (306)
128 2e2e_A Formate-dependent nitri 98.6 1.6E-07 5.4E-12 82.3 10.5 117 469-588 21-143 (177)
129 2r5s_A Uncharacterized protein 98.6 3.5E-07 1.2E-11 79.9 12.6 155 395-554 9-172 (176)
130 1p5q_A FKBP52, FK506-binding p 98.6 3.1E-07 1.1E-11 89.6 12.7 142 422-586 146-291 (336)
131 3gyz_A Chaperone protein IPGC; 98.6 2.7E-07 9.3E-12 77.8 10.3 104 454-560 31-138 (151)
132 3upv_A Heat shock protein STI1 98.6 4.4E-07 1.5E-11 74.2 11.3 95 494-588 4-100 (126)
133 2kck_A TPR repeat; tetratricop 98.6 4.1E-07 1.4E-11 72.2 10.6 97 494-590 6-107 (112)
134 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.1E-12 89.4 9.1 187 391-588 3-198 (281)
135 2uy1_A Cleavage stimulation fa 98.5 8.4E-05 2.9E-09 76.2 29.2 200 238-450 197-411 (493)
136 3dra_A Protein farnesyltransfe 98.5 7.6E-05 2.6E-09 70.7 26.7 160 406-569 124-302 (306)
137 2vgx_A Chaperone SYCD; alterna 98.5 2.6E-07 8.8E-12 78.0 8.1 110 454-566 16-129 (148)
138 1hxi_A PEX5, peroxisome target 98.5 4.9E-07 1.7E-11 73.2 9.3 93 496-588 19-113 (121)
139 1elw_A TPR1-domain of HOP; HOP 98.5 2.2E-06 7.7E-11 68.5 13.0 108 460-570 6-116 (118)
140 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.9E-11 76.7 12.0 128 434-565 21-154 (177)
141 3q49_B STIP1 homology and U bo 98.5 1.7E-06 5.7E-11 71.8 12.0 96 493-588 8-105 (137)
142 2qfc_A PLCR protein; TPR, HTH, 98.5 7.1E-06 2.4E-10 78.4 17.9 162 394-555 77-266 (293)
143 3gw4_A Uncharacterized protein 98.5 2.9E-06 1E-10 75.8 14.4 82 404-485 4-93 (203)
144 3upv_A Heat shock protein STI1 98.5 1.8E-06 6.3E-11 70.4 11.9 110 459-571 5-123 (126)
145 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.9E-11 73.5 10.7 109 459-570 19-130 (142)
146 3sz7_A HSC70 cochaperone (SGT) 98.4 2.2E-06 7.4E-11 73.8 12.4 109 458-569 11-122 (164)
147 3sz7_A HSC70 cochaperone (SGT) 98.4 1.6E-06 5.5E-11 74.6 11.6 95 494-588 11-107 (164)
148 2dba_A Smooth muscle cell asso 98.4 4.3E-06 1.5E-10 70.2 13.9 112 458-572 28-145 (148)
149 4gcn_A Protein STI-1; structur 98.4 9.7E-07 3.3E-11 72.1 9.3 93 495-587 9-110 (127)
150 1na0_A Designed protein CTPR3; 98.4 2.4E-06 8.1E-11 69.2 11.6 96 494-589 9-106 (125)
151 3gw4_A Uncharacterized protein 98.4 1.9E-06 6.7E-11 77.0 11.9 153 434-587 3-174 (203)
152 1elw_A TPR1-domain of HOP; HOP 98.4 2.7E-06 9.3E-11 68.1 11.5 97 493-589 3-101 (118)
153 2fbn_A 70 kDa peptidylprolyl i 98.4 2.2E-06 7.6E-11 76.4 12.0 168 399-587 11-184 (198)
154 4f3v_A ESX-1 secretion system 98.4 4.6E-06 1.6E-10 77.1 13.8 182 404-590 18-238 (282)
155 3q49_B STIP1 homology and U bo 98.3 3.8E-06 1.3E-10 69.6 11.5 112 456-570 7-126 (137)
156 2lni_A Stress-induced-phosphop 98.3 3.5E-06 1.2E-10 69.2 11.1 95 494-588 16-112 (133)
157 1a17_A Serine/threonine protei 98.3 1E-05 3.5E-10 69.4 14.5 127 424-554 14-145 (166)
158 1wao_1 Serine/threonine protei 98.3 1.9E-06 6.5E-11 88.3 10.3 118 465-585 13-135 (477)
159 4f3v_A ESX-1 secretion system 98.3 5.9E-06 2E-10 76.4 12.2 138 426-568 105-249 (282)
160 2vyi_A SGTA protein; chaperone 98.3 7.1E-06 2.4E-10 66.9 11.6 96 494-589 12-109 (131)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.4E-06 2.2E-10 84.0 13.4 143 423-588 268-414 (457)
162 2dba_A Smooth muscle cell asso 98.2 9.9E-06 3.4E-10 67.9 11.8 96 493-588 27-127 (148)
163 1p5q_A FKBP52, FK506-binding p 98.2 1.1E-05 3.9E-10 78.5 13.5 119 391-513 146-283 (336)
164 2fbn_A 70 kDa peptidylprolyl i 98.2 2.4E-06 8E-11 76.3 7.7 119 392-514 38-176 (198)
165 1hxi_A PEX5, peroxisome target 98.2 6.6E-06 2.3E-10 66.4 9.6 97 461-560 20-119 (121)
166 3rkv_A Putative peptidylprolyl 98.2 6.1E-06 2.1E-10 70.7 9.9 63 526-588 63-125 (162)
167 1elr_A TPR2A-domain of HOP; HO 98.2 5.6E-06 1.9E-10 67.6 9.2 95 494-588 4-107 (131)
168 3q7a_A Farnesyltransferase alp 98.2 0.00099 3.4E-08 63.7 25.7 171 333-509 66-257 (349)
169 2hr2_A Hypothetical protein; a 98.2 6.8E-06 2.3E-10 68.4 9.3 62 527-588 58-130 (159)
170 4b4t_Q 26S proteasome regulato 98.2 2.7E-05 9.2E-10 79.0 15.7 187 401-587 13-243 (434)
171 2kck_A TPR repeat; tetratricop 98.2 9.9E-06 3.4E-10 64.0 9.8 98 460-560 8-111 (112)
172 1elr_A TPR2A-domain of HOP; HO 98.2 9.6E-06 3.3E-10 66.2 10.0 109 460-572 6-124 (131)
173 4gcn_A Protein STI-1; structur 98.2 3.7E-05 1.3E-09 62.6 13.2 104 425-558 10-115 (127)
174 1wao_1 Serine/threonine protei 98.2 1.3E-05 4.4E-10 82.1 12.8 116 398-518 12-134 (477)
175 2xev_A YBGF; tetratricopeptide 98.2 1.3E-05 4.6E-10 65.3 10.6 60 528-587 41-103 (129)
176 1ihg_A Cyclophilin 40; ppiase 98.1 1E-05 3.4E-10 79.8 11.3 137 424-582 224-363 (370)
177 3q7a_A Farnesyltransferase alp 98.1 0.00021 7.2E-09 68.4 19.8 212 372-588 69-330 (349)
178 2xev_A YBGF; tetratricopeptide 98.1 4.6E-05 1.6E-09 62.0 13.5 104 464-570 8-120 (129)
179 3k9i_A BH0479 protein; putativ 98.1 2.2E-06 7.4E-11 68.9 5.0 59 528-586 29-87 (117)
180 3k9i_A BH0479 protein; putativ 98.1 3.7E-06 1.3E-10 67.5 6.1 94 471-564 3-99 (117)
181 2if4_A ATFKBP42; FKBP-like, al 98.1 7E-06 2.4E-10 80.0 9.2 146 423-588 179-327 (338)
182 2c2l_A CHIP, carboxy terminus 98.1 1.7E-05 5.7E-10 75.1 11.6 110 457-569 3-115 (281)
183 3rkv_A Putative peptidylprolyl 98.1 7.2E-06 2.5E-10 70.3 8.0 78 494-571 63-143 (162)
184 3dss_A Geranylgeranyl transfer 98.1 0.001 3.6E-08 63.3 23.0 192 373-570 90-319 (331)
185 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4.1E-10 68.5 8.9 93 496-588 51-157 (164)
186 3n71_A Histone lysine methyltr 98.0 1.3E-05 4.6E-10 81.4 9.9 128 468-595 319-470 (490)
187 2l6j_A TPR repeat-containing p 98.0 2.5E-06 8.7E-11 67.5 3.4 92 493-584 3-102 (111)
188 1dce_A Protein (RAB geranylger 98.0 0.00023 7.7E-09 74.3 18.9 169 406-578 43-244 (567)
189 2hr2_A Hypothetical protein; a 98.0 1.6E-05 5.6E-10 66.1 8.0 73 496-568 59-144 (159)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.5E-10 77.4 9.5 152 392-561 179-334 (338)
191 3ma5_A Tetratricopeptide repea 98.0 4E-05 1.4E-09 59.2 9.1 66 523-588 4-69 (100)
192 3ro3_A PINS homolog, G-protein 97.9 2.8E-05 9.5E-10 66.2 8.9 132 425-556 11-159 (164)
193 4b4t_Q 26S proteasome regulato 97.9 0.00011 3.8E-09 74.4 14.5 158 431-588 12-203 (434)
194 1na3_A Designed protein CTPR2; 97.9 5.7E-05 2E-09 56.9 9.4 81 494-574 9-91 (91)
195 3dss_A Geranylgeranyl transfer 97.9 0.0022 7.4E-08 61.1 21.9 177 408-588 90-303 (331)
196 1ihg_A Cyclophilin 40; ppiase 97.9 5.1E-05 1.7E-09 74.8 10.2 112 459-588 224-335 (370)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00012 4.1E-09 74.6 12.6 95 494-588 268-379 (457)
198 1zu2_A Mitochondrial import re 97.8 1.5E-05 5.1E-10 66.2 4.7 47 542-588 62-119 (158)
199 2kat_A Uncharacterized protein 97.8 4.6E-05 1.6E-09 60.7 7.4 65 524-588 17-81 (115)
200 3bee_A Putative YFRE protein; 97.8 0.00015 5.1E-09 54.7 9.4 69 523-591 3-74 (93)
201 1klx_A Cysteine rich protein B 97.7 0.00035 1.2E-08 57.6 10.8 89 500-590 31-127 (138)
202 1zu2_A Mitochondrial import re 97.7 9.8E-05 3.3E-09 61.3 7.1 21 540-560 105-125 (158)
203 2l6j_A TPR repeat-containing p 97.6 0.00029 9.8E-09 55.3 8.4 65 524-588 2-66 (111)
204 2kat_A Uncharacterized protein 97.5 0.00042 1.4E-08 54.9 9.1 79 477-558 4-85 (115)
205 3n71_A Histone lysine methyltr 97.5 0.00053 1.8E-08 69.7 11.0 123 432-554 318-463 (490)
206 3qwp_A SET and MYND domain-con 97.5 0.00015 5.1E-09 72.6 6.6 115 502-636 295-427 (429)
207 1dce_A Protein (RAB geranylger 97.4 0.003 1E-07 65.8 16.3 147 436-587 42-219 (567)
208 3qww_A SET and MYND domain-con 97.4 0.00024 8.3E-09 70.9 7.3 84 527-630 341-432 (433)
209 1na3_A Designed protein CTPR2; 97.4 0.00065 2.2E-08 50.8 8.1 64 525-588 8-71 (91)
210 1klx_A Cysteine rich protein B 97.4 0.0029 1E-07 51.9 12.6 112 437-557 9-128 (138)
211 3ma5_A Tetratricopeptide repea 97.2 0.001 3.5E-08 51.1 7.2 64 494-557 7-72 (100)
212 3ly7_A Transcriptional activat 97.1 0.016 5.3E-07 55.5 15.6 135 422-559 193-343 (372)
213 2kc7_A BFR218_protein; tetratr 97.1 0.0027 9.2E-08 48.4 8.8 64 500-563 6-72 (99)
214 3ly7_A Transcriptional activat 97.1 0.0076 2.6E-07 57.6 13.3 132 454-589 190-339 (372)
215 3qww_A SET and MYND domain-con 97.0 0.002 6.8E-08 64.3 9.4 94 470-563 310-424 (433)
216 2kc7_A BFR218_protein; tetratr 96.9 0.0024 8.3E-08 48.6 7.2 58 532-589 6-64 (99)
217 1wy6_A Hypothetical protein ST 96.8 0.088 3E-06 41.3 14.8 142 433-593 17-158 (172)
218 3qwp_A SET and MYND domain-con 96.8 0.0045 1.6E-07 61.8 9.8 97 468-564 297-414 (429)
219 2v5f_A Prolyl 4-hydroxylase su 96.4 0.018 6.2E-07 44.3 8.9 75 493-567 4-87 (104)
220 1qsa_A Protein (soluble lytic 96.2 1.4 5E-05 45.7 24.4 114 438-554 229-347 (618)
221 3u64_A Protein TP_0956; tetrat 96.0 0.025 8.7E-07 51.7 9.1 71 526-596 199-276 (301)
222 1pc2_A Mitochondria fission pr 96.0 0.017 5.9E-07 47.2 7.2 91 473-565 13-110 (152)
223 3lvg_A Clathrin heavy chain 1; 95.9 0.0064 2.2E-07 59.4 4.9 231 90-342 52-325 (624)
224 3bee_A Putative YFRE protein; 95.9 0.057 2E-06 40.3 9.2 67 493-559 5-76 (93)
225 3mkq_A Coatomer beta'-subunit; 95.9 0.063 2.1E-06 59.1 13.6 97 404-521 611-708 (814)
226 3mkq_A Coatomer beta'-subunit; 95.7 0.27 9.1E-06 54.0 17.8 101 402-520 662-762 (814)
227 3lvg_A Clathrin heavy chain 1; 95.5 0.25 8.7E-06 48.5 13.8 183 7-207 67-276 (624)
228 1pc2_A Mitochondria fission pr 95.3 0.051 1.7E-06 44.5 7.4 66 523-588 29-99 (152)
229 2v5f_A Prolyl 4-hydroxylase su 94.8 0.12 4.1E-06 39.6 8.0 64 525-588 4-74 (104)
230 3mkq_B Coatomer subunit alpha; 94.5 1.2 3.9E-05 37.5 13.6 127 401-551 14-140 (177)
231 1wy6_A Hypothetical protein ST 94.5 1.4 4.8E-05 34.7 12.9 140 231-389 18-157 (172)
232 1nzn_A CGI-135 protein, fissio 94.4 0.78 2.7E-05 36.0 11.6 90 475-566 18-114 (126)
233 4gns_B Protein CSD3, chitin bi 94.4 0.21 7.2E-06 53.0 11.2 55 533-587 344-398 (754)
234 3mkq_B Coatomer subunit alpha; 93.4 0.79 2.7E-05 38.5 10.5 44 69-118 17-60 (177)
235 3u64_A Protein TP_0956; tetrat 93.3 0.16 5.5E-06 46.5 6.7 63 496-558 201-272 (301)
236 4h7y_A Dual specificity protei 91.8 0.95 3.3E-05 36.5 8.4 57 508-564 74-132 (161)
237 3ffl_A Anaphase-promoting comp 91.3 0.74 2.5E-05 38.0 7.7 121 452-586 12-148 (167)
238 4h7y_A Dual specificity protei 91.1 1.7 5.6E-05 35.2 9.1 54 538-591 72-125 (161)
239 2ff4_A Probable regulatory pro 89.9 0.78 2.7E-05 44.9 8.1 69 529-597 174-247 (388)
240 3o48_A Mitochondria fission 1 89.1 2.7 9.3E-05 33.1 8.8 72 491-562 37-114 (134)
241 1nzn_A CGI-135 protein, fissio 89.1 1.2 4E-05 35.0 6.8 66 523-588 32-102 (126)
242 1y8m_A FIS1; mitochondria, unk 87.2 9.8 0.00033 30.4 11.0 72 491-562 36-113 (144)
243 4fhn_B Nucleoporin NUP120; pro 87.1 9.1 0.00031 43.5 15.4 165 293-476 815-989 (1139)
244 4b4t_P 26S proteasome regulato 86.8 6.1 0.00021 39.3 12.3 180 406-587 30-245 (445)
245 1v54_E Cytochrome C oxidase po 86.6 4.8 0.00016 29.8 8.1 48 520-567 39-86 (109)
246 1wdy_A 2-5A-dependent ribonucl 86.3 14 0.00046 33.7 14.0 20 98-117 42-61 (285)
247 1v54_E Cytochrome C oxidase po 86.3 4 0.00014 30.2 7.5 64 438-503 25-88 (109)
248 3ffl_A Anaphase-promoting comp 85.8 3.3 0.00011 34.1 7.9 30 494-523 122-151 (167)
249 4gns_B Protein CSD3, chitin bi 85.7 7.5 0.00026 41.3 12.7 51 468-521 347-398 (754)
250 4ady_A RPN2, 26S proteasome re 84.5 51 0.0017 36.0 31.3 250 299-553 383-656 (963)
251 2ff4_A Probable regulatory pro 84.2 5.8 0.0002 38.7 10.5 72 427-499 175-250 (388)
252 2uwj_G Type III export protein 84.0 8 0.00027 28.4 8.2 87 71-163 20-106 (115)
253 1zbp_A Hypothetical protein VP 83.4 18 0.00061 32.6 12.1 120 432-561 6-135 (273)
254 3o48_A Mitochondria fission 1 82.9 9 0.00031 30.2 8.8 81 443-526 23-111 (134)
255 4fhn_B Nucleoporin NUP120; pro 82.8 8.7 0.0003 43.7 12.7 149 428-593 817-971 (1139)
256 2wpv_A GET4, UPF0363 protein Y 82.3 32 0.0011 32.0 21.0 168 294-487 37-217 (312)
257 1n11_A Ankyrin; clathrin, BAND 82.0 30 0.001 34.0 15.2 19 99-117 84-102 (437)
258 2p58_C Putative type III secre 81.9 7.1 0.00024 28.7 7.2 75 174-250 22-99 (116)
259 3txn_A 26S proteasome regulato 80.6 42 0.0014 32.5 14.7 22 397-418 24-45 (394)
260 2uwj_G Type III export protein 80.4 6.8 0.00023 28.8 6.7 75 174-250 21-98 (115)
261 2p58_C Putative type III secre 80.4 12 0.00042 27.5 8.0 87 71-163 21-107 (116)
262 1y8m_A FIS1; mitochondria, unk 79.4 22 0.00076 28.4 10.6 68 455-525 36-109 (144)
263 2y69_E Cytochrome C oxidase su 78.8 9.6 0.00033 29.9 7.5 63 439-503 69-131 (152)
264 2y69_E Cytochrome C oxidase su 78.0 13 0.00045 29.2 8.1 49 519-567 81-129 (152)
265 1n11_A Ankyrin; clathrin, BAND 77.1 20 0.00068 35.3 12.0 142 64-219 18-168 (437)
266 1wdy_A 2-5A-dependent ribonucl 76.3 33 0.0011 30.9 12.7 200 5-218 13-240 (285)
267 3esl_A Checkpoint serine/threo 76.2 27 0.00091 29.9 10.4 52 540-591 93-146 (202)
268 3lpz_A GET4 (YOR164C homolog); 73.6 60 0.0021 30.4 21.3 167 394-588 37-215 (336)
269 2qx5_A Nucleoporin NIC96; mRNA 73.3 31 0.0011 36.0 12.2 82 327-420 300-384 (661)
270 1zbp_A Hypothetical protein VP 72.5 7.6 0.00026 35.0 6.4 60 502-561 5-66 (273)
271 4b4t_R RPN7, 26S proteasome re 68.6 17 0.00057 36.0 8.8 60 460-520 133-194 (429)
272 3lpz_A GET4 (YOR164C homolog); 68.2 79 0.0027 29.6 25.9 167 293-486 38-215 (336)
273 2qx5_A Nucleoporin NIC96; mRNA 65.3 1.4E+02 0.0047 31.3 16.2 39 98-136 158-199 (661)
274 4a1g_A Mitotic checkpoint seri 64.0 54 0.0018 26.6 9.2 49 545-593 84-134 (152)
275 1k1a_A B-cell lymphoma 3-encod 63.2 31 0.0011 30.2 9.0 53 66-118 15-69 (241)
276 3b7b_A Euchromatic histone-lys 61.5 54 0.0018 28.6 10.3 21 98-118 80-100 (237)
277 2wpv_A GET4, UPF0363 protein Y 61.4 1E+02 0.0035 28.6 20.9 168 394-588 35-216 (312)
278 3kea_A K1L; tropism, ANK repea 61.2 83 0.0029 28.6 11.7 129 45-182 47-181 (285)
279 4ady_A RPN2, 26S proteasome re 60.6 2E+02 0.0067 31.5 28.0 26 94-119 232-257 (963)
280 4b4t_R RPN7, 26S proteasome re 60.5 26 0.00089 34.6 8.4 98 393-490 132-240 (429)
281 2wvi_A Mitotic checkpoint seri 60.4 68 0.0023 26.4 9.4 49 545-593 79-129 (164)
282 4b4t_P 26S proteasome regulato 58.5 1.5E+02 0.005 29.3 21.2 97 425-521 139-245 (445)
283 3eiq_C Programmed cell death p 58.2 7.7 0.00026 36.9 3.9 28 95-122 57-84 (358)
284 1bd8_A P19INK4D CDK4/6 inhibit 57.7 24 0.00082 28.4 6.6 15 103-117 43-57 (156)
285 3txn_A 26S proteasome regulato 55.6 1.5E+02 0.0051 28.6 21.5 92 397-488 104-211 (394)
286 3ljn_A Hypothetical protein; a 55.1 36 0.0012 32.4 8.3 153 56-219 17-195 (364)
287 3b7b_A Euchromatic histone-lys 54.7 50 0.0017 28.8 8.8 139 66-219 17-166 (237)
288 3mv2_A Coatomer subunit alpha; 54.6 1.4E+02 0.0046 27.8 12.3 33 526-558 207-239 (325)
289 2zu6_B Programmed cell death p 53.6 34 0.0012 31.8 7.3 72 324-395 169-240 (307)
290 2rfa_A Transient receptor pote 52.0 83 0.0028 27.2 9.8 48 145-192 135-184 (232)
291 2nsz_A Programmed cell death p 51.2 64 0.0022 25.3 7.6 63 395-457 10-77 (129)
292 3esl_A Checkpoint serine/threo 50.5 68 0.0023 27.4 8.0 48 472-520 93-141 (202)
293 3eu9_A Huntingtin-interacting 50.4 1.2E+02 0.0042 26.0 11.4 50 67-120 16-67 (240)
294 3l6a_A Eukaryotic translation 50.1 55 0.0019 31.3 8.4 26 96-121 16-41 (364)
295 3aji_A 26S proteasome non-ATPa 49.0 56 0.0019 28.3 8.1 14 67-80 13-26 (231)
296 3kea_A K1L; tropism, ANK repea 48.0 55 0.0019 29.8 8.1 137 67-217 38-181 (285)
297 2nsz_A Programmed cell death p 46.5 51 0.0017 25.8 6.4 26 294-319 11-36 (129)
298 3hra_A Ankyrin repeat family p 45.2 1.3E+02 0.0046 25.0 11.5 18 102-119 12-29 (201)
299 3jxi_A Vanilloid receptor-rela 44.5 58 0.002 28.9 7.6 23 98-120 96-118 (260)
300 2rfa_A Transient receptor pote 44.1 1.5E+02 0.0053 25.4 11.4 54 261-315 157-219 (232)
301 3aji_A 26S proteasome non-ATPa 43.7 66 0.0023 27.8 7.7 7 282-288 192-198 (231)
302 1k1a_A B-cell lymphoma 3-encod 43.6 1.6E+02 0.0054 25.4 12.5 22 265-286 16-37 (241)
303 2ion_A PDCD4, programmed cell 43.2 57 0.0019 26.5 6.3 63 395-457 12-79 (152)
304 3f6q_A Integrin-linked protein 41.7 1.4E+02 0.0049 24.3 10.6 20 200-219 108-127 (179)
305 2ion_A PDCD4, programmed cell 41.6 64 0.0022 26.2 6.4 26 294-319 13-38 (152)
306 2d2s_A Exocyst complex compone 41.3 72 0.0025 28.2 7.2 88 429-520 24-117 (235)
307 3d9h_A CDNA FLJ77766, highly s 39.5 1.1E+02 0.0039 27.6 8.8 16 98-113 18-33 (285)
308 2fu4_A Ferric uptake regulatio 38.7 98 0.0033 21.5 6.5 63 46-109 6-69 (83)
309 3jxi_A Vanilloid receptor-rela 38.5 53 0.0018 29.2 6.3 53 65-117 10-71 (260)
310 2d2s_A Exocyst complex compone 37.8 1.3E+02 0.0045 26.5 8.3 22 328-349 25-46 (235)
311 3ljn_A Hypothetical protein; a 37.7 99 0.0034 29.2 8.4 92 96-193 21-115 (364)
312 4a1g_A Mitotic checkpoint seri 37.7 1.4E+02 0.0048 24.1 7.6 55 235-289 80-135 (152)
313 3eiq_C Programmed cell death p 37.3 2.7E+02 0.0094 26.3 13.2 26 396-421 221-246 (358)
314 3d9h_A CDNA FLJ77766, highly s 35.9 44 0.0015 30.5 5.3 20 98-117 62-81 (285)
315 2etb_A Transient receptor pote 35.6 34 0.0012 30.4 4.5 53 64-117 6-68 (256)
316 4g8k_A 2-5A-dependent ribonucl 35.2 2.7E+02 0.0091 25.7 11.0 177 5-194 133-329 (337)
317 3eu9_A Huntingtin-interacting 35.1 96 0.0033 26.8 7.4 17 202-218 182-198 (240)
318 3hra_A Ankyrin repeat family p 34.7 2E+02 0.0067 23.9 9.5 39 178-216 157-197 (201)
319 3utm_A Tankyrase-1; tankyrase, 34.2 2.8E+02 0.0095 25.5 16.2 20 98-117 61-80 (351)
320 3utm_A Tankyrase-1; tankyrase, 34.2 2.7E+02 0.0093 25.6 10.9 109 5-120 32-149 (351)
321 1ya0_A SMG-7 transcript varian 34.1 1.1E+02 0.0037 30.7 8.0 50 533-582 159-208 (497)
322 4aez_C MAD3, mitotic spindle c 33.9 1.7E+02 0.0058 25.4 8.1 41 545-585 133-175 (223)
323 1bd8_A P19INK4D CDK4/6 inhibit 33.4 50 0.0017 26.4 4.7 15 301-315 109-123 (156)
324 2w57_A Ferric uptake regulatio 33.3 1.2E+02 0.004 24.5 6.8 63 46-109 6-69 (150)
325 3qye_A TBC1 domain family memb 33.1 2.3E+02 0.0079 26.4 9.9 126 40-173 167-308 (331)
326 2zu6_B Programmed cell death p 33.0 2.9E+02 0.01 25.4 12.6 65 426-492 169-235 (307)
327 4b4t_S RPN3, 26S proteasome re 32.7 1.2E+02 0.004 30.5 7.8 61 459-521 232-297 (523)
328 4gq2_M Nucleoporin NUP120; bet 32.3 3.2E+02 0.011 30.2 12.1 45 528-572 899-948 (950)
329 2fe3_A Peroxide operon regulat 32.2 1.1E+02 0.0037 24.4 6.4 62 46-108 11-72 (145)
330 2f8y_A Notch homolog 1, transl 31.7 1.2E+02 0.0041 25.9 7.3 21 98-118 61-81 (223)
331 2yru_A Steroid receptor RNA ac 30.8 1.1E+02 0.0038 23.4 5.8 47 40-86 44-90 (118)
332 1mzb_A Ferric uptake regulatio 30.7 1.1E+02 0.0038 24.0 6.2 62 47-109 8-70 (136)
333 2xig_A Ferric uptake regulatio 30.4 1.1E+02 0.0039 24.5 6.2 64 45-109 15-78 (150)
334 3ygs_P Procaspase 9; apoptosis 30.3 77 0.0026 23.3 4.7 39 406-444 51-89 (97)
335 3ltj_A Alpharep-4; protein eng 27.4 2.7E+02 0.0092 23.2 18.6 63 419-486 117-179 (201)
336 1oyz_A Hypothetical protein YI 27.3 3.3E+02 0.011 24.2 19.6 18 492-509 204-221 (280)
337 2y1l_E Darpin-8.4; hydrolase-i 26.9 2.4E+02 0.0083 22.6 8.1 20 98-117 50-69 (169)
338 3twr_A Tankyrase-2; ankyrin re 26.6 2.4E+02 0.0082 22.4 9.3 109 100-218 13-129 (165)
339 2wvi_A Mitotic checkpoint seri 26.2 1.5E+02 0.0052 24.3 6.1 54 237-290 77-131 (164)
340 4aez_C MAD3, mitotic spindle c 26.1 2.4E+02 0.0081 24.5 7.6 54 235-288 129-183 (223)
341 3ltj_A Alpharep-4; protein eng 24.7 3E+02 0.01 22.8 19.0 152 391-553 27-178 (201)
342 4ets_A Ferric uptake regulatio 24.6 1.8E+02 0.006 23.8 6.5 63 46-109 22-86 (162)
343 3ltm_A Alpha-REP4; protein eng 23.8 3.2E+02 0.011 22.9 18.3 29 456-485 155-183 (211)
344 2pnn_A Transient receptor pote 23.8 3.8E+02 0.013 23.6 9.7 97 23-120 9-126 (273)
345 4b4t_S RPN3, 26S proteasome re 23.7 1.4E+02 0.0048 29.9 6.5 58 527-586 232-296 (523)
346 3ygs_P Procaspase 9; apoptosis 23.6 1.1E+02 0.0038 22.4 4.5 37 304-340 51-87 (97)
347 3eyy_A Putative iron uptake re 23.5 1.2E+02 0.0041 24.2 5.1 61 46-108 8-68 (145)
348 3bqo_A Telomeric repeat-bindin 23.1 3.5E+02 0.012 23.0 13.1 66 510-575 94-166 (211)
349 2etb_A Transient receptor pote 22.7 1.9E+02 0.0063 25.4 7.0 18 202-219 95-112 (256)
350 4gq2_M Nucleoporin NUP120; bet 22.4 5.8E+02 0.02 28.1 12.0 122 295-437 815-950 (950)
351 2fu4_A Ferric uptake regulatio 22.3 2E+02 0.0068 19.9 6.0 61 149-210 7-68 (83)
352 3ltm_A Alpha-REP4; protein eng 21.5 3.6E+02 0.012 22.6 18.5 152 391-553 32-183 (211)
353 2fe3_A Peroxide operon regulat 21.4 2E+02 0.0068 22.9 6.1 61 448-510 12-72 (145)
354 2b7e_A PRE-mRNA processing pro 21.2 1E+02 0.0035 20.1 3.3 33 236-268 2-35 (59)
355 1ug3_A EIF4GI, eukaryotic prot 20.9 1.5E+02 0.0051 27.9 6.0 23 395-417 144-166 (339)
356 3v31_A Ankyrin repeat family A 20.7 1.9E+02 0.0066 23.1 6.2 138 42-187 16-160 (167)
357 3bu8_A Telomeric repeat-bindin 20.2 4.2E+02 0.014 22.8 8.5 50 474-523 88-143 (235)
358 3re2_A Predicted protein; meni 20.2 3.7E+02 0.013 25.3 7.9 81 493-578 295-393 (472)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-40 Score=356.94 Aligned_cols=496 Identities=7% Similarity=-0.063 Sum_probs=291.7
Q ss_pred ccCCChhHHHHHhhcCCCCCcchHHHHHHhhccCC---hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHH
Q 006364 5 CKSGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD---DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHS 81 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 81 (648)
.+.|.+..+...|+.++.+++..|+.++..|.+.+ +|+.+|++|.. ..|+..++..+..+|...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34566666777777777777778888888887777 77788887774 45677777778888888888888888877
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC-C------------------CcchHHHHHHHHHcCCCChHH
Q 006364 82 LIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN-K------------------DSVSWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 82 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------------------~~~~~~~li~~~~~~g~~~~~ 142 (648)
.+... ++++.+++.++.+|.+.|++++|.++|+++.. . ++.+|+.++.+|.+.| ++++
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~ 218 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDR 218 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHH
Confidence 76543 56777788888888888888888888874332 2 3667777777777777 7777
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCChhHHH--HH-HHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHh
Q 006364 143 AILALIEMMRKGLRLD-HVSFTSAASACGHEKNLELGK--QI-HGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFR 218 (648)
Q Consensus 143 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 218 (648)
|++.|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+|+.++.+|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777776643 33 233333333333222211111 11 2222222223333344444445555555555544444
Q ss_pred cCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 219 RMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298 (648)
Q Consensus 219 ~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 298 (648)
.+.+ . .++..+++.++.++.+.|++++|..+++.+.+.+ +
T Consensus 297 ~~~~--------------------------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~----------- 336 (597)
T 2xpi_A 297 SING--------------------------L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-P----------- 336 (597)
T ss_dssp TSTT--------------------------G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred Hhhc--------------------------C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-c-----------
Confidence 4431 0 1233344444444444444444444444443332 1
Q ss_pred HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 299 MYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
.+..+|+.++.++.+.|++++|..+|+++....+.+..++..+...+.+.| ++++|..
T Consensus 337 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~ 394 (597)
T 2xpi_A 337 --------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN--KISEARR 394 (597)
T ss_dssp --------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc--cHHHHHH
Confidence 233445555555555555555555555554433334444444444444444 4555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVR 455 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 455 (648)
++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. +
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 555444432 23455666677777777777777777766542 356677777777777777777777777777642 3
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDY---HIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSV 528 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 528 (648)
.+..+|+.+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. .+.+..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 356777777777777777777777777775432 45666 6677777777777777777777777654 3346777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
|..+..+|...|++++|.+.++++++++|+++..+..++++|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 7777777777888888888888888878877777777777764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-40 Score=356.51 Aligned_cols=475 Identities=9% Similarity=-0.042 Sum_probs=389.8
Q ss_pred HHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHH
Q 006364 101 MYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQ 180 (648)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 180 (648)
.+.+.|....+...|+.++.+++..|+.++..|.+.| ++++|+.+|++|.. ..||..++..+..+|.+.|+++.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3566788888999999999899999999999999999 99999999999985 56888999999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCC-------------------CchhhHHHhc-----CCh
Q 006364 181 IHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDR-------------------NVISWTTMIS-----MNR 236 (648)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~-----g~~ 236 (648)
+++.+.. .+++..+++.++.+|.++|++++|.++|+++... ++.+|+.+.. |++
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 9998754 3678899999999999999999999999954433 3667777766 888
Q ss_pred hhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHH--HHH-HHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 237 EDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEG--RMI-HGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
++|+++|++|...+ |+.. .+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 88888888887753 4433 333333333322222211 111 34444444445556677778889999999999999
Q ss_pred HhhcCC--CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC
Q 006364 313 FDELSC--REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS 390 (648)
Q Consensus 313 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 390 (648)
|+++.. ++..+|+.++.+|.+.|++++|+++|+++....+.+..++..++.++.+.| +.++|..++..+.+.. +.
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG--EKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TT
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhC-cc
Confidence 999987 788999999999999999999999999999844568889999999999999 9999999999999654 56
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..+|..++.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 788999999999999999999999998753 468899999999999999999999999999863 4578999999999
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC--HHHHHHHHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGPG--LSVLQSLLGACR 537 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~ 537 (648)
|.+.|++++|.++|+++.+. .| +..+|..++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999865 45 48899999999999999999999999873 3676 789999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 538 IHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
..|++++|.+.++++.+.+|+++.+|..++.+|...|+|++|.+.++++.+.
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999988763
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.4e-28 Score=252.78 Aligned_cols=215 Identities=11% Similarity=0.045 Sum_probs=180.0
Q ss_pred hHHHHHHHHHhCCCCCCh-hhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 40 DALSFALRMNLIGVVFDA-VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 345566777777766554 357888999999999999999999999999999999999999999887765432
Q ss_pred CCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHH
Q 006364 119 PNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGN 198 (648)
Q Consensus 119 ~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 198 (648)
.+.+ ..++|.++|++|...|+.||..||++||++|++.|+++.|.++++.|.+.|+.||..+||
T Consensus 81 ---------------~~~~-~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ---------------SPNP-GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ---------------SCCH-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ---------------hhcc-hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHH
Q 006364 199 VLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIH 278 (648)
Q Consensus 199 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 278 (648)
+||.+|++.|++++|. ++|++|...|+.||..||+++|.+|++.|++++|.+++
T Consensus 145 ~lI~~~~~~g~~~~A~--------------------------~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 145 PALFGFCRKGDADKAY--------------------------EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHTTCHHHHH--------------------------HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH--------------------------HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 9999999999776555 45667889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 279 GLCIKTNFLSEPSVCNCLITMYARF 303 (648)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~ 303 (648)
++|.+.|..|+..||+.++..|...
T Consensus 199 ~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 199 QRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999988764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.6e-27 Score=244.98 Aligned_cols=185 Identities=11% Similarity=0.092 Sum_probs=173.5
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCch-------hhHHHHHHHHHHHHHhCCCCchh
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAED-------ISLKHGQRCHSHIIKVGLDSDPI 393 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~ 393 (648)
..++.+|.+|++.|++++|+++|++|.+ |++||..||+++|.+|++.+. ..++.|..+|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999 999999999999999987541 15789999999999999999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQ----EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCG 469 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 469 (648)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 47999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
+.|++++|.++|++|.+. ++.|+..||+.++..|++.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999877 9999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.6e-24 Score=219.28 Aligned_cols=313 Identities=10% Similarity=0.054 Sum_probs=235.2
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcccHHHHHHH
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC--R-EIISWNALISG 330 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~ 330 (648)
+..+|..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++.. | +...+..+...
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44455555555555566666666555555532 22334566666666667777777666666532 2 33455666666
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFE 410 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 410 (648)
+...|++++|.+.|+++....+.+..++..+...+...| +.+.|...++.+.+.. +.+...+..+...+...|++++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 667777777777777776644455666777777777777 7777777777777654 2345677778888888889999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 411 SQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 411 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
|...|++..+ .+..+|..+...|...|++++|+..|+++.+. .| +..+|..+..++.+.|++++|.+.|+++.+
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9888886542 36778899999999999999999999999884 34 467888889999999999999999999976
Q ss_pred hcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 487 DYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 487 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
. .|+ ..++..++..+.+.|++++|.+.++++. .+.+..++..+...+...|++++|...+++++++.|.++..|
T Consensus 300 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 300 L---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred h---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 5 454 8889999999999999999999998876 345677899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 006364 564 VLMSNLYAEKGD 575 (648)
Q Consensus 564 ~~l~~~~~~~g~ 575 (648)
..++.++...|+
T Consensus 377 ~~lg~~~~~~~~ 388 (388)
T 1w3b_A 377 SNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTCC
T ss_pred HhHHHHHHHccC
Confidence 999999887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-23 Score=213.00 Aligned_cols=344 Identities=15% Similarity=0.165 Sum_probs=298.4
Q ss_pred CChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKV 312 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 312 (648)
|++++|.+.++.+... .|+.. .+..+...+...|+++.|...+....+.. +.+..++..+...|.+.|++++|...
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 5666666666666553 45544 45556667788999999999999888764 66788999999999999999999999
Q ss_pred HhhcC--CC-CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 313 FDELS--CR-EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 313 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
|+++. .| +..+|..+..++.+.|++++|++.|+++....+.+...+..+...+...| +.++|...+..+.+.. +
T Consensus 90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG--RLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhC-C
Confidence 99875 23 45679999999999999999999999998844455667777888888899 9999999999999874 3
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVL 465 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 465 (648)
.+...+..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHH
Confidence 4578899999999999999999999998763 35678999999999999999999999999874 454 68889999
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 542 (648)
.++...|++++|++.|+.+.+. .|+ ...|..++.++.+.|++++|.+.++++. .+++..+|..+...+...|++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999754 676 8899999999999999999999999876 566888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++|...++++++..|+++.++..++.+|...|++++|.+.++++.+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-21 Score=206.08 Aligned_cols=425 Identities=9% Similarity=-0.023 Sum_probs=288.4
Q ss_pred hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 006364 125 SWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTY 204 (648)
Q Consensus 125 ~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 204 (648)
.|...-..+.+.| ++++|+..|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNK-KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3445556667777 7777777777777654 677777777777777777777777777777654 33456677777777
Q ss_pred HhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006364 205 SKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKT 284 (648)
Q Consensus 205 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 284 (648)
.+.|++++|...|+.+...+. ++......++..+........+.+.+..+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD---------------------------FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS---------------------------CCGGGTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHhhHHHHHHHHHHHHhcCC---------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766655432111 11111112222111111111111111111110
Q ss_pred cCCCCchhHHHH---HHHHHhcCChHHHHHHHhhcC---------CC-CcccHHHHHHHHHh---cCCcHHHHHHHHHhH
Q 006364 285 NFLSEPSVCNCL---ITMYARFESMQDSEKVFDELS---------CR-EIISWNALISGYAQ---NGLSLAAVQAFFGVI 348 (648)
Q Consensus 285 ~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 348 (648)
+..|+......- ............+...+.... .+ +...+......+.. .|++++|+..|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 137 TATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 000000000000 000000001111111111111 11 12334444444444 788999999888877
Q ss_pred h-----C--C-------CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHH
Q 006364 349 K-----E--S-------KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRV 414 (648)
Q Consensus 349 ~-----~--~-------~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 414 (648)
. . . +.+..++..+...+...| +++.|...+..+.+.... ...+..+...|...|++++|...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN--DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 6 1 1 223556777778888888 999999999998887655 88888899999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCC
Q 006364 415 FNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIE 491 (648)
Q Consensus 415 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 491 (648)
|+...+ .+..+|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|..+++.+.+. .
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 368 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---F 368 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---S
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---c
Confidence 987654 367789999999999999999999999998853 335678888999999999999999999999865 4
Q ss_pred CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCC
Q 006364 492 PS-PDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPG----LSVLQSLLGACRI---HGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 492 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~ 559 (648)
|+ ...+..+...+.+.|++++|...++++. ..++ ..+|..+...+.. .|+++.|...++++.+..|.+
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 54 7889999999999999999999998764 2222 3488999999999 999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.++..++.+|...|++++|.+.+++..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999998775
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.1e-21 Score=202.85 Aligned_cols=307 Identities=10% Similarity=0.041 Sum_probs=256.6
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHH
Q 006364 254 NDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISG 330 (648)
Q Consensus 254 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 330 (648)
+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45567778888888899999999998888763 45677888888899999999999998888753 356788888889
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCH---HHHHHHH------------HHhccCchhhHHHHHHHHHHHHHhCCCCchhHH
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNA---YTFGSVL------------NAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVG 395 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~---~~~~~ll------------~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 395 (648)
|.+.|++++|...|+++....+.+. ..+..+. ..+...| +++.|...+..+.+.. +.+...+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG--DYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999998887444444 5555443 3367777 8999999999998764 4577889
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHH-------
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS-ITFLSV------- 464 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l------- 464 (648)
..+..+|.+.|++++|.++|+.+.+ .+..+|..++..|...|++++|+..|+++.. ..|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 4788999999999999999999999999987 45554 334333
Q ss_pred -----HHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 006364 465 -----LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSL 532 (648)
Q Consensus 465 -----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 532 (648)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|...++++. .+.+..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999865 555 4588999999999999999999999865 44578999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
+.+|...|++++|...+++++++.|+++..+..++.+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999944
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.8e-21 Score=200.94 Aligned_cols=452 Identities=9% Similarity=-0.034 Sum_probs=268.2
Q ss_pred hhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHH
Q 006364 58 VTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYT 134 (648)
Q Consensus 58 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 134 (648)
..+...-..+...|++++|...|+.+.+.. |++..+..+..+|.+.|++++|...|+++.+ .+...|..+...+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345556666777778888888888777765 5677777777777777777777777776543 24456777777777
Q ss_pred cCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 006364 135 QDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDAN 214 (648)
Q Consensus 135 ~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 214 (648)
+.| ++++|+..|+.+...+. ++......++..+........+.+.+..+...+..|+......-.
T Consensus 85 ~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------- 149 (514)
T 2gw1_A 85 GLG-KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------------- 149 (514)
T ss_dssp HTT-CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHh-hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh-------------
Confidence 777 77777777777766542 233333333332222111111111111111111111110000000
Q ss_pred HHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCC---------hhhHHHHHHHHh---cCCchHHHHHHHHHHH
Q 006364 215 KVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPN---------DVTFIGLIHAIS---IGNLVKEGRMIHGLCI 282 (648)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~---------~~~~~~ll~~~~---~~~~~~~a~~~~~~~~ 282 (648)
.+.... ........+...+......++ ...+......+. +.|+++.|...++.+.
T Consensus 150 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 150 ------------ERKDKQ-ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp --------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred ------------HHHhhc-cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 000000 000111111111111111111 111222222222 2455555555555554
Q ss_pred H-----hcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHH
Q 006364 283 K-----TNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYT 357 (648)
Q Consensus 283 ~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~ 357 (648)
+ ..-.|+..... ..+...|..+...+...|++++|+..|+++....+. ..+
T Consensus 217 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~ 272 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLK-----------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNS 272 (514)
T ss_dssp HHHHHHTTTSTTCHHHH-----------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHH
T ss_pred HHhhhhhccCccccccC-----------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHH
Confidence 4 11111110000 001234555566666666666666666666651111 556
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 006364 358 FGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALA 434 (648)
Q Consensus 358 ~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 434 (648)
+..+...+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|+...+ .+..+|..+...+.
T Consensus 273 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 273 YIYMALIMADRN--DSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHTSS--CCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 666666666666 6666666666666543 23456677777888888888888888876542 35678888888888
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhh---c
Q 006364 435 RHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGR---V 507 (648)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~---~ 507 (648)
..|++++|+..|+++.+. .+.+..++..+...+...|++++|...++.+.+...-.|+ ...+..+...+.+ .
T Consensus 350 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999988874 2334677888888889999999999999888755222232 3488888999999 9
Q ss_pred CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 508 GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 508 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
|++++|...++++. .+.+..+|..+...+...|+++.|...+++++++.|.++..+..+.
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999988765 3456778889999999999999999999999999999888776663
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=8.6e-20 Score=193.14 Aligned_cols=421 Identities=10% Similarity=0.038 Sum_probs=251.2
Q ss_pred chHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006364 124 VSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMST 203 (648)
Q Consensus 124 ~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 203 (648)
..|..+-..+.+.| ++++|+..|+++.... +.+...+..+..++...|+++.|.+.+..+++.. +.+...+..+..+
T Consensus 26 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAK-NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTT-CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455555556666 6666666666665533 1244555556666666666666666666666553 3345566666777
Q ss_pred HHhCCChHHHHHHHhcCCC-CCchh--hHHHhc-CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 006364 204 YSKCEVTGDANKVFRRMHD-RNVIS--WTTMIS-MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHG 279 (648)
Q Consensus 204 ~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 279 (648)
|...|++++|...|+.+.. |+... ...++. +...+|...++.+.... |
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~-------------------------- 154 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--E-------------------------- 154 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--c--------------------------
Confidence 7777777777776653321 11000 000000 22233444444332210 0
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---cHHHHHHHHHh--------cCCcHHHHHHHHHhH
Q 006364 280 LCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREII---SWNALISGYAQ--------NGLSLAAVQAFFGVI 348 (648)
Q Consensus 280 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~ 348 (648)
+..+........+..+....+.+.+...+......+.. .+..+...+.. .|++++|+..|+++.
T Consensus 155 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 155 -----GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp ---------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00001111122333444555555555555554433332 22222222211 235677777777766
Q ss_pred hCCCCCHH-------HHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-
Q 006364 349 KESKPNAY-------TFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE- 420 (648)
Q Consensus 349 ~~~~p~~~-------~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 420 (648)
...+.+.. ++..+...+...+ +++.|...+..+.+.. |+...+..+...|...|++++|.+.|+...+
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKN--NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 63333322 3444445555666 7777777777777654 3366777777778888888888888776542
Q ss_pred --CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHH
Q 006364 421 --KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHY 497 (648)
Q Consensus 421 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~ 497 (648)
.+..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.+. .|+ ...+
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 381 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVP 381 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHH
Confidence 356678888888888888888888888877742 223567777777888888888888888887755 454 6677
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhCC----CC----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCC
Q 006364 498 SCMVDMLGRVGRLEEAEELVGQIP----GG----PGLSVLQSLLGACRIH----------GNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~~~----~~----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 559 (648)
..+...+.+.|++++|...++++. .. .....+..+...+... |++++|...++++.+..|++
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 778888888888888888877653 11 1122234445566666 88888888888888888888
Q ss_pred chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..+..++.+|...|++++|.+.+++..+
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888888888888888888888877664
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.5e-19 Score=186.64 Aligned_cols=296 Identities=12% Similarity=0.059 Sum_probs=255.3
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhcC---CCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHH
Q 006364 287 LSEPSVCNCLITMYARFESMQDSEKVFDELS---CREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLN 363 (648)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~ 363 (648)
+.+...+..+...|.+.|++++|..+|+.+. ..+..+|..+..+|...|++++|+..|+++.+..+.+..++..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4456678889999999999999999999875 3467889999999999999999999999999855667889999999
Q ss_pred HhccCchhhHHHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHhhcCCHHHHHHHHhhcCC---CChhH
Q 006364 364 AVGAAEDISLKHGQRCHSHIIKVGLDSDP---IVGSAL------------LDMYGKRGSIFESQRVFNETQE---KSEFA 425 (648)
Q Consensus 364 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~ 425 (648)
++...| ++++|...+..+.+... .+. ..+..+ ...|.+.|++++|...|+.+.+ .+..+
T Consensus 103 ~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQG--KLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHTT--CHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcC--CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999 99999999999987542 233 455545 4458999999999999998753 47789
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH----
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM---- 500 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l---- 500 (648)
|..++.+|.+.|++++|+..|+++.+. .+.+..++..+...+...|++++|+..|+.+.+. .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHH
Confidence 999999999999999999999999875 2456789999999999999999999999999754 666 5555555
Q ss_pred --------HHHHhhcCCHHHHHHHHhhCC-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 501 --------VDMLGRVGRLEEAEELVGQIP-GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 501 --------~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+..+.+.|++++|...++++. ..|+ ...|..+...+...|++++|...++++++..|+++.+|..+
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 889999999999999998875 2343 44788889999999999999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhC
Q 006364 567 SNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+.+|...|++++|.+.++++.+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.8e-18 Score=182.98 Aligned_cols=441 Identities=10% Similarity=0.024 Sum_probs=283.3
Q ss_pred hhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHH
Q 006364 57 AVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGY 133 (648)
Q Consensus 57 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 133 (648)
...+..+...+.+.|++++|...++.+++.. +.++..+..+..+|.+.|++++|.+.|++..+ .+...|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3455666667777788888888888887765 34567777777777778888888887776643 3456677777777
Q ss_pred HcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChH
Q 006364 134 TQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMG--YGTHVSVGNVLMSTYSKCEVTG 211 (648)
Q Consensus 134 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~ 211 (648)
...| ++++|+..|+.+. ..|+... ..+..+...+....+...+..+.+.. ..+........+..+....+.+
T Consensus 104 ~~~g-~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLG-NFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHT-CHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcC-CHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 7777 7777877775332 1222211 11222233333445555555554321 1111112233344444555555
Q ss_pred HHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCCChhhHHHHHH-HHhcCCchHHHHHHHHHHHHhcCCCCc
Q 006364 212 DANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCPNDVTFIGLIH-AISIGNLVKEGRMIHGLCIKTNFLSEP 290 (648)
Q Consensus 212 ~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (648)
.+...+......+.. ...+...+. .+...+
T Consensus 178 ~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~--------------------- 208 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTA----------------------------YALLSDALQRLYSATD--------------------- 208 (537)
T ss_dssp HHHHTSCCCCSSCSS----------------------------HHHHHHHHHHHHTCSH---------------------
T ss_pred HHHHHHhhccccccH----------------------------HHHHHHHHHHHHHhhh---------------------
Confidence 554444443322111 111111111 111000
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhcCCCCc----------ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 291 SVCNCLITMYARFESMQDSEKVFDELSCREI----------ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 291 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
-......|++++|..+|+.+.+.++ .+|..+...+...|++++|+..|++.... .|+..++..
T Consensus 209 ------~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 281 (537)
T 3fp2_A 209 ------EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIF 281 (537)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCchHHHH
Confidence 0000112344444444444432211 13455556677788888888888887772 233777777
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCC
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHG 437 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 437 (648)
+...+...| +++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+...+ .+...|..+...+...|
T Consensus 282 l~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 282 LALTLADKE--NSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHTCCSS--CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--CHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 888888888 8888888888888765 34677788899999999999999999987653 35778999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhc------
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP----SPDHYSCMVDMLGRV------ 507 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~------ 507 (648)
++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...+.+.
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999998852 34467888889999999999999999999875421112 133355566778888
Q ss_pred ----CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 508 ----GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 508 ----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
|++++|...+++.. .+.+..+|..+...+...|++++|...++++.++.|.++....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999998865 4456788999999999999999999999999999998876644
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.6e-17 Score=164.10 Aligned_cols=304 Identities=9% Similarity=0.006 Sum_probs=227.0
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHH
Q 006364 255 DVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGY 331 (648)
Q Consensus 255 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 331 (648)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|++... .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456677778888999999999998888764 45677788888888899999999988887642 3557788888888
Q ss_pred HhcCCcHHHHHHHHHhHhCCC---CCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCH
Q 006364 332 AQNGLSLAAVQAFFGVIKESK---PNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSI 408 (648)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (648)
...|++++|+..|++.....+ .+...+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA---------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH---------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH---------HH----------------HHHHHHHHHHHHHccCH
Confidence 888999999998888876322 222222222110 00 11123345677788888
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 409 FESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 409 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
++|.+.|+.+.+ .+...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|...|+...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888887653 36677888888888889999999988888875 23456778888888888899999999888887
Q ss_pred HhcCCCCC-hHHHH------------HHHHHHhhcCCHHHHHHHHhhCC-CCC-CH----HHHHHHHHHHHHcCCHHHHH
Q 006364 486 KDYHIEPS-PDHYS------------CMVDMLGRVGRLEEAEELVGQIP-GGP-GL----SVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 486 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~----~~~~~l~~~~~~~g~~~~a~ 546 (648)
+. .|+ ...+. .+...+.+.|++++|...++++. ..| +. ..+..+...+...|+++.|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 55 454 33332 23667888999999999888754 223 23 23455777888899999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 547 RIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..++++.+..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.9e-17 Score=165.01 Aligned_cols=308 Identities=12% Similarity=0.039 Sum_probs=229.1
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVF 313 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 313 (648)
|++++|+..|++..... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...|
T Consensus 17 g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999998753 2356788888889999999999999999999874 446688999999999999999999999
Q ss_pred hhcCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC
Q 006364 314 DELSCREI------ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG 387 (648)
Q Consensus 314 ~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~ 387 (648)
+.....++ ..+..+...+. ...+..+...+...| +.+.|...+..+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGA--DYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhC
Confidence 98865433 23333311000 001111222333334 4445555554444433
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHH-
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFL- 462 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~- 462 (648)
+.+...+..+...|...|++++|...++...+ .+..+|..+...+...|++++|+..|++..+. .|+ ...+.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (359)
T 3ieg_A 151 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 227 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHH
Confidence 23455666677777778888888888876653 35677888888888888999999988888874 343 23222
Q ss_pred -----------HHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-h----HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCC
Q 006364 463 -----------SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-P----DHYSCMVDMLGRVGRLEEAEELVGQIP--GGP 524 (648)
Q Consensus 463 -----------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 524 (648)
.+...+...|++++|...++.+.+. .|+ . ..+..+...+.+.|++++|...+++.. .+.
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 2355688899999999999999866 344 2 345668899999999999999998865 345
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999998888887653
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=5.2e-15 Score=161.06 Aligned_cols=535 Identities=13% Similarity=0.112 Sum_probs=319.8
Q ss_pred cccCCChhHHHHHhhcCCC-------CCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhH-------------H
Q 006364 4 YCKSGQFDKALCIFNNLNN-------PDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTY-------------S 61 (648)
Q Consensus 4 ~~~~g~~~~A~~~f~~~~~-------p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~-------------~ 61 (648)
|-+.|-++.|++.+..+.. .....=.-++.-+++.. .++++++.|...+++-|.... .
T Consensus 617 CE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~ 696 (1630)
T 1xi4_A 617 CEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQ 696 (1630)
T ss_pred HHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHH
Confidence 4467888889988886541 12222334566666666 899999999976554332222 2
Q ss_pred HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC---------------CCc---
Q 006364 62 TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN---------------KDS--- 123 (648)
Q Consensus 62 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~--- 123 (648)
.++..+-+.+.++...-.+..++ ....|+.+....|.+.++.|++.+..++..+-.- +|.
T Consensus 697 ~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pl 774 (1630)
T 1xi4_A 697 SLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPL 774 (1630)
T ss_pred HHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCc
Confidence 22233323232332222222222 2456889999999999999999998888776431 111
Q ss_pred -------------c------hHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHhcCCC
Q 006364 124 -------------V------SWNAILSGYTQDGDYGVEAILALIEMMRKGLRL-----------DHVSFTSAASACGHEK 173 (648)
Q Consensus 124 -------------~------~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~ 173 (648)
+ .....|..|++.- ++..+-.+.-.++..+... +......|+..+-+.+
T Consensus 775 i~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~v-np~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrn 853 (1630)
T 1xi4_A 775 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKV-NPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRN 853 (1630)
T ss_pred eeeccccccHHHHHHHHHhcCchhHHHHHHhcc-CCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 1 1123455555544 3333333333333222111 1111233333344444
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH-------------------------HHHHhcC--------
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDA-------------------------NKVFRRM-------- 220 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-------------------------~~~~~~~-------- 220 (648)
++..-...++.-+..| ..++.++|+|...|...++-.+. .-.+++-
T Consensus 854 rLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~ 932 (1630)
T 1xi4_A 854 RLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN 932 (1630)
T ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH
Confidence 4444555555555555 45677788887777654422211 1111100
Q ss_pred ----------------CCCCchhhHHHhc-------------------------------------CChhhHHHHHHHHH
Q 006364 221 ----------------HDRNVISWTTMIS-------------------------------------MNREDAVSLFKEMR 247 (648)
Q Consensus 221 ----------------~~~~~~~~~~li~-------------------------------------g~~~~a~~~~~~m~ 247 (648)
.+.|...|+.++. |.+.+|++++++..
T Consensus 933 vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv 1012 (1630)
T 1xi4_A 933 VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1012 (1630)
T ss_pred HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0134555555543 67777888887777
Q ss_pred HCCC--CCChhhHHHHHHH---------------------------HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 248 LDGV--CPNDVTFIGLIHA---------------------------ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLIT 298 (648)
Q Consensus 248 ~~g~--~p~~~~~~~ll~~---------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 298 (648)
..+- .-+...-+.++.+ |...|.+++|..+|++... +..-+.
T Consensus 1013 l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~ 1083 (1630)
T 1xi4_A 1013 LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV---------NTSAVQ 1083 (1630)
T ss_pred cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHH
Confidence 4321 0111222223322 2334444455544444210 011111
Q ss_pred H-HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHH
Q 006364 299 M-YARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQ 377 (648)
Q Consensus 299 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~ 377 (648)
. +-..|++++|.++.++. .+..+|..+..++...|++++|++.|.+. -|...|..+..+|.+.| +++++.
T Consensus 1084 VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lG--kyEEAI 1154 (1630)
T 1xi4_A 1084 VLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG--NWEELV 1154 (1630)
T ss_pred HHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC--CHHHHH
Confidence 1 22455555555555544 23567777888888888888888888554 56667777888888888 888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006364 378 RCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD 457 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 457 (648)
+.+....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 8887766654 34444445788888888877544442 3456666777778888888888888888774
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACR 537 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 537 (648)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|......+. .++..+..++..|.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQ 1291 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHH
Confidence 36777888888888888888887765 234677777777777888888877766533 34455668888889
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CCcHHHHHHH
Q 006364 538 IHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK--GDWEMVAILR 583 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 583 (648)
..|.+++|..+++..+.++|.+...|..|+.+|++. ++..++.+++
T Consensus 1292 ~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999988888888888888775 3444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=7.1e-17 Score=158.86 Aligned_cols=284 Identities=10% Similarity=-0.015 Sum_probs=160.7
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+..++++....+.+...+..+...+.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 33333444444444444444444444321 122333334444444444444444444444322222333333333333
Q ss_pred cCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHH
Q 006364 367 AAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 443 (648)
..|+ +.+.|...+..+.+.. +.+...+..+...|...|++++|.+.|+...+ .+...|..+...|...|++++|+
T Consensus 102 ~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGH-KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCS-CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhhh-hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 3221 2333333333333322 12334455566666666666666666665442 23455666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHhhcCCHHHHHHH
Q 006364 444 NQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH-------IEPSPDHYSCMVDMLGRVGRLEEAEEL 516 (648)
Q Consensus 444 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 516 (648)
..|++..+. .+.+...+..+...+...|++++|...++.+.+... .......+..+..++.+.|++++|...
T Consensus 180 ~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777777664 233456666777777777777777777777764311 022256777777778888888888877
Q ss_pred HhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCc
Q 006364 517 VGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY-AEKGDW 576 (648)
Q Consensus 517 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 576 (648)
+++.. .+.+..+|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 77654 3345667777778888888888888888888888888888888888877 455554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=8.9e-17 Score=158.18 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=228.5
Q ss_pred CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006364 319 REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSAL 398 (648)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (648)
.++..+..+...+...|++++|+++|+++....+.+...+..+...+...| +.+++...+..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN--KANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh--hHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 466778888899999999999999999998855556667777778888888 9999999999999865 3467788899
Q ss_pred HHHHhhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcH
Q 006364 399 LDMYGKRG-SIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMI 474 (648)
Q Consensus 399 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 474 (648)
...|...| ++++|.+.|+...+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 357789999999999999999999999998852 33457777788999999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-----------CCCHHHHHHHHHHHHHcCCH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG-----------GPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~ 542 (648)
++|...++.+.+ ..|+ ...+..+...+.+.|++++|...+++... +....+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999974 4665 88999999999999999999999877541 34467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++|...++++.+..|.++..+..++.+|...|++++|.+.+++..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998654
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.8e-14 Score=155.39 Aligned_cols=378 Identities=12% Similarity=0.101 Sum_probs=287.6
Q ss_pred hHHHHHHHhcCCCChhHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhh-HHHhc-CCh
Q 006364 161 SFTSAASACGHEKNLELGKQIHGVSIKMG--YGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISW-TTMIS-MNR 236 (648)
Q Consensus 161 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~-g~~ 236 (648)
-....+++|...|.+.++.++++..+-.+ +.-+....+.|+.+..+. +..+...+.+....-+..-. ..++. |.+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 33557788889999999999999988432 123445667777777776 55666666666554332221 22222 999
Q ss_pred hhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhc
Q 006364 237 EDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDEL 316 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 316 (648)
++|..+|++.. -.....+.++ -..+++++|.++.+.+ .++.+|..+..++...|++++|...|.+.
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 99999999852 1111122232 2678899999888754 45788999999999999999999999764
Q ss_pred CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHH
Q 006364 317 SCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGS 396 (648)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (648)
.|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.+ .++....+. + .++...+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~--rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTN--RLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhc--CHHHHHHHH----h---CCCHHHHH
Confidence 677889999999999999999999999877722 33333345888899988 777544432 1 34556677
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHK 476 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 476 (648)
.+.+.|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. -+..+|..+-.+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 8999999999999999999996 48999999999999999999999977 456899999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH--GNVEMGERIADAL 552 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 552 (648)
|..+... +.-+...+..++..|.+.|.+++|..+++... .+.....|.-|...+.+. +++.++.+.|..-
T Consensus 1269 A~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9987653 34456777899999999999999999998765 223444666666666554 5777777777776
Q ss_pred HhcCC-----CCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 553 MKMEP-----AGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 553 ~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
..+.| .++..|.-+..+|.+.|+|+.|...
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66655 6778899999999999999999853
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=4.3e-17 Score=163.22 Aligned_cols=279 Identities=11% Similarity=-0.003 Sum_probs=220.2
Q ss_pred HHhcCChHHHHH-HHhhcCC---C----CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchh
Q 006364 300 YARFESMQDSEK-VFDELSC---R----EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDI 371 (648)
Q Consensus 300 ~~~~g~~~~a~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~ 371 (648)
+.-.|++++|.. .|++... . +...|..+...+...|++++|+..|+++....+.+..++..+..++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-- 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-- 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc--
Confidence 334577777877 7765432 1 34567888888888899999999998888866667788888888888888
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHH---------------HHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTA---------------IISAL 433 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~ 433 (648)
+.+.|...+..+.+.. +.+...+..+...|...|++++|.+.|+.+.+. +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 8889998888888775 346778888889999999999999998876532 2222221 13334
Q ss_pred HhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHH
Q 006364 434 ARHGDYESVMNQFKEMENKGVR-PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLE 511 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 511 (648)
...|++++|+..|+++.+.... ++..++..+...+...|++++|+..|+.+.+. .|+ ...+..+...+.+.|+++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHH
Confidence 4889999999999999884322 14788899999999999999999999999765 565 889999999999999999
Q ss_pred HHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCcHH
Q 006364 512 EAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG-----------SGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 512 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 578 (648)
+|...++++. .+.+..+|..+...+...|+++.|...+++++++.|.+ +.+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999865 44568899999999999999999999999999998887 7899999999999999999
Q ss_pred HHHHHH
Q 006364 579 VAILRK 584 (648)
Q Consensus 579 a~~~~~ 584 (648)
|..+++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998875
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.8e-17 Score=158.97 Aligned_cols=341 Identities=12% Similarity=0.084 Sum_probs=108.4
Q ss_pred hCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHH
Q 006364 104 RWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHG 183 (648)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 183 (648)
+.|++++|.++++++..|+ .|+.+..++.+.| ++++|++.|.+ .+|..+|..+++++...|++++|...+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g-~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKG-MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcC-CHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999986664 8999999999999 99999999965 2577789999999999999999999888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhH
Q 006364 184 VSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTF 258 (648)
Q Consensus 184 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~ 258 (648)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+-. |.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45578888999999999999998877752 33334443333 4444444444433 244
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcH
Q 006364 259 IGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSL 338 (648)
Q Consensus 259 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (648)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 44555555555555554444443 234444555555555555555544433332 22222333444455555555
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhc
Q 006364 339 AAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 339 ~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 418 (648)
+|+.+++.....-+.....|+-+--++++-. -+++.+..+.|..-
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~-----------------------------------p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFK-----------------------------------PQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-----------------------------------HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-----------------------------------HHHHHHHHHHHHHH
Confidence 5555554444311333333333333333332 23334444444321
Q ss_pred CC--------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC
Q 006364 419 QE--------KSEFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH 489 (648)
Q Consensus 419 ~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 489 (648)
.. .+...|..+...|...++++.|.. .|.+. ...-+...|.-++.--....-+-+|+.++-.-
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----- 341 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----- 341 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-----
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-----
Confidence 11 144567777777777777777765 33332 12233444544444444444444444444311
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 490 IEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 490 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
.|.. .+-|..++...=+...+.+++++.
T Consensus 342 -~p~~--l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 342 -KPLL--LNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -CGGG--HHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -CHHH--HHHHHHHHHhccCcHHHHHHHHHc
Confidence 2322 334444444444444444444443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.3e-16 Score=159.59 Aligned_cols=260 Identities=10% Similarity=-0.013 Sum_probs=212.0
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALL 399 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 399 (648)
+...|..+...+.+.|++++|+..|+++....+.+..++..+...+...| +.+.|...+..+.+.. +.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE--NEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568888888889999999999999888855667888888888888888 8999999998888765 34577888899
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 006364 400 DMYGKRGSIFESQRVFNETQEKS-------------EFAWTAIISALARHGDYESVMNQFKEMENKGVR-PDSITFLSVL 465 (648)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 465 (648)
..|.+.|++++|...|+.+.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999998776421 223445688999999999999999999985322 2578899999
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 542 (648)
..+...|++++|+..|+++.+. .|+ ...|..+..+|.+.|++++|...++++. .+.+..+|..+..++...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999865 565 8899999999999999999999999865 345688999999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 543 EMGERIADALMKMEPA------------GSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
++|...+++++++.|. +...|..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998876 367899999999999999998887753
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.7e-16 Score=155.09 Aligned_cols=342 Identities=11% Similarity=0.047 Sum_probs=162.0
Q ss_pred hCCChHHHHHHHhcCCCCCchhhHHHhc-----CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 006364 206 KCEVTGDANKVFRRMHDRNVISWTTMIS-----MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGL 280 (648)
Q Consensus 206 ~~g~~~~A~~~~~~~~~~~~~~~~~li~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 280 (648)
+.|++++|.++++++..|+ .|..+.. |++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3344455555555543332 4443333 455555555533 25777888888888888999999887777
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH
Q 006364 281 CIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS 360 (648)
Q Consensus 281 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 360 (648)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 7663 45577888899999999999988888763 66678999999999999999999999876 36888
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChH
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYE 440 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (648)
+..++.+.| ++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 154 LA~~L~~Lg--~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 154 LASTLVHLG--EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHTTT--CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhc--cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 888888888 888888888776 377888888888888888888877776654 34444456888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHhcccCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSV--LTVCGRNGMIHKGRHLFDSMLKDYHIEP------SPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~~~g~~~~ 512 (648)
+|+.+++...... +--...|+.+ +-+--+.+++.+.++.|.. +.+++| +...|.-++-.|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999998877532 2223444444 4444455566666666553 336666 37778899999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
|...+-.-+ |+..--..+.....+-.|.+.--++....++..| .....|..++...=+...+.+++++.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 887665543 2222223445556667777766666666665544 33455555555555555555555433
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3e-15 Score=143.55 Aligned_cols=267 Identities=10% Similarity=0.028 Sum_probs=209.2
Q ss_pred HHHhcCChHHHHHHHhhcCCCCc----ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHH
Q 006364 299 MYARFESMQDSEKVFDELSCREI----ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLK 374 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~ 374 (648)
-....|+++.|+..++.....++ .....+..+|...|++++|+..++. ..+|+..++..+...+...+ +.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~--~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS--RRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST--THH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC--cHH
Confidence 34567888888888877665443 2345567788888888888876644 34566777788888888888 888
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006364 375 HGQRCHSHIIKVGLDS-DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKG 453 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 453 (648)
.+...++.+...+..| ++..+..+...|...|++++|.+.++. ..+...+..++..|.+.|++++|...|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 8998888888776544 566677788999999999999999998 457889999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHH
Q 006364 454 VRPDSITF---LSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLS 527 (648)
Q Consensus 454 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 527 (648)
.|+.... ...+..+...|++++|..+|+++.+. .| +...++.+..++.+.|++++|...+++.. .+.++.
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4664321 12233344569999999999999876 45 48899999999999999999999999865 445788
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 528 VLQSLLGACRIHGNVEM-GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
+|..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 89999999999999865 6789999999999998654 34555556665544
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.7e-14 Score=150.20 Aligned_cols=403 Identities=9% Similarity=0.054 Sum_probs=270.0
Q ss_pred ChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCC--CCchhhHHHhc--
Q 006364 158 DHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHD--RNVISWTTMIS-- 233 (648)
Q Consensus 158 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~-- 233 (648)
|...|..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56678888874 6789999999999999875 355677889999999999999999999998766 55555655442
Q ss_pred ----CChhhHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCchHHHHHHHHHHHHhcCCCCc---h
Q 006364 234 ----MNREDAVS----LFKEMRL-DGVCPN-DVTFIGLIHAISI---------GNLVKEGRMIHGLCIKTNFLSEP---S 291 (648)
Q Consensus 234 ----g~~~~a~~----~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~---~ 291 (648)
|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.|..+|+..++. |.. .
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~ 166 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQ 166 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHH
Confidence 66666554 5554433 244443 3344444444332 45666666666666652 221 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhH------hC----CCCCH------
Q 006364 292 VCNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVI------KE----SKPNA------ 355 (648)
Q Consensus 292 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~----~~p~~------ 355 (648)
+|..........|. ..+..++. ...+++..|..++.... .. ++|+.
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22221111100110 00111110 02334556666555421 11 24431
Q ss_pred --HHHHHHHHHhcc----Cchh--hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh-------cCCHH-------HHHH
Q 006364 356 --YTFGSVLNAVGA----AEDI--SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK-------RGSIF-------ESQR 413 (648)
Q Consensus 356 --~~~~~ll~a~~~----~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~ 413 (648)
..|...+.-... .++. ..+.+..+++...... +.++..|..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 233333322211 1100 1235667787777653 4567788888888775 68987 8999
Q ss_pred HHhhcCC---C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 414 VFNETQE---K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS--ITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 414 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+|+...+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.++|+...+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9997764 3 578899999999999999999999999998 45653 47888888888899999999999999754
Q ss_pred cCCCCC-hHHHHHHHHH-HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch--
Q 006364 488 YHIEPS-PDHYSCMVDM-LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-- 561 (648)
Q Consensus 488 ~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-- 561 (648)
.|. ...|...+.. +...|+.++|..+|++.. .+.++..|..++..+...|+.+.|..+++++++..|.++.
T Consensus 386 ---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 386 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp ---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred ---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 444 3444333322 346899999999998765 3346889999999999999999999999999998876665
Q ss_pred --hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 562 --SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 562 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
.|...+......|+.+.+..+.+++.+.
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7778888888899999999999888653
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=4.7e-15 Score=156.05 Aligned_cols=400 Identities=11% Similarity=0.058 Sum_probs=276.1
Q ss_pred CcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcchHHHHH
Q 006364 122 DSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLM 201 (648)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 201 (648)
|...|..++. +.+.| +.++|..+|+++.+.- +-+...|...+..+.+.|+++.|..+|+.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQ-PIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6778999998 57889 9999999999998742 2345578888999999999999999999998764 5777777777
Q ss_pred HH-HHhCCChHHHHH----HHhcCC------CCCchhhHHHh--------------cCChhhHHHHHHHHHHCCCCCCh-
Q 006364 202 ST-YSKCEVTGDANK----VFRRMH------DRNVISWTTMI--------------SMNREDAVSLFKEMRLDGVCPND- 255 (648)
Q Consensus 202 ~~-~~~~g~~~~A~~----~~~~~~------~~~~~~~~~li--------------~g~~~~a~~~~~~m~~~g~~p~~- 255 (648)
.. ....|+.++|.+ +|+... .++...|...+ .|++++|..+|++.... |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 53 345688877765 665442 13445565544 25788999999998873 432
Q ss_pred --hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhh-------cC------CCC
Q 006364 256 --VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDE-------LS------CRE 320 (648)
Q Consensus 256 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------~~------~~~ 320 (648)
..|..........+. ..+.. ++. .+.++++.|..++.. +. .++
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 223222211100110 00111 110 012233444433332 11 111
Q ss_pred --------cccHHHHHHHHHhc----CCc----HHHHHHHHHhHhCCCCCHHHHHHHHHHhcc-------CchhhHH---
Q 006364 321 --------IISWNALISGYAQN----GLS----LAAVQAFFGVIKESKPNAYTFGSVLNAVGA-------AEDISLK--- 374 (648)
Q Consensus 321 --------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~-------~~~~~~~--- 374 (648)
...|...+.....+ ++. ..++.+|++.....+-+...|......+.+ .| +.+
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~ 299 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAK 299 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc--chhhhh
Confidence 13444444332222 222 367778888877445567777777766654 56 655
Q ss_pred ----HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHhCCChHHHHHHH
Q 006364 375 ----HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SE-FAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 375 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
.|..++...++.-.+.+...+..++..+.+.|++++|..+|+...+ | +. ..|..++..+.+.|+.++|..+|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888887633445688899999999999999999999997653 3 33 58999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHH-hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC-
Q 006364 447 KEMENKGVRPD-SITFLSVLTV-CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG- 522 (648)
Q Consensus 447 ~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 522 (648)
++..+. .|+ ...|...... +...|++++|..+|+...+. .|+ ...|..+++.+.+.|+.++|..+|++...
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999875 333 3333332222 33589999999999999876 465 88999999999999999999999998642
Q ss_pred ---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 523 ---GP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 523 ---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
.| ....|...+.....+|+.+.+..+.+++.+..|.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22 2458999999999999999999999999998884
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1.8e-14 Score=149.93 Aligned_cols=300 Identities=9% Similarity=-0.021 Sum_probs=219.0
Q ss_pred hhHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHhhcCC-CCcccHHH
Q 006364 256 VTFIGLIHAISI----GNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FESMQDSEKVFDELSC-REIISWNA 326 (648)
Q Consensus 256 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ 326 (648)
..+..+-..+.. .+++++|...++...+.| ++..+..|..+|.. .++.++|.+.|++..+ .+...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 333444444444 566666766666666654 34555666666665 5677777777766543 35566666
Q ss_pred HHHHHHh----cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHHhCCCCchhHHHHH
Q 006364 327 LISGYAQ----NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHGQRCHSHIIKVGLDSDPIVGSAL 398 (648)
Q Consensus 327 li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 398 (648)
+...|.. .+++++|++.|++.... .+...+..+...+.. .+ +.+.+...+....+.| ++..+..+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~--~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQ--DYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 6667766 67777888887777662 234455555555543 45 7788888887777654 45566667
Q ss_pred HHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 399 LDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALARH-----GDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 399 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
..+|.. .++.++|.++|+...+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 777777 8899999999988765 4677888888888887 89999999999998865 345666666666
Q ss_pred cccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---
Q 006364 469 GRNG---MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGACRI--- 538 (648)
Q Consensus 469 ~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--- 538 (648)
...| +.++|+++|++..+. .+...+..|...|.. .+++++|...+++.....++..+..|...+..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6545 899999999998754 357788889999988 89999999999987656678889999999988
Q ss_pred -cCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 006364 539 -HGNVEMGERIADALMKMEPA---GSGSYVLMSNLYAE 572 (648)
Q Consensus 539 -~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 572 (648)
.+|.++|...++++.+.+|+ ++.....++.++..
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 77777777766554
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4e-16 Score=155.99 Aligned_cols=230 Identities=9% Similarity=-0.072 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 006364 354 NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAII 430 (648)
Q Consensus 354 ~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 430 (648)
+...+..+...+.+.| +++.|...+..+.+.. +.+...+..+...|.+.|++++|...|++..+ .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEG--DLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4556888888888999 9999999999999875 45688899999999999999999999998763 4678999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDS-----------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSC 499 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 499 (648)
..|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|+.+|+++.+...-.++...+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999999873 3432 22334577889999999999999999876332235889999
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+...|.+.|++++|.+.++++. .+.+..+|..+..++...|++++|...+++++++.|.++.++..++.+|...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999865 45578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 006364 578 MVAILRKGMKS 588 (648)
Q Consensus 578 ~a~~~~~~m~~ 588 (648)
+|.+.+++..+
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=6.9e-16 Score=154.44 Aligned_cols=304 Identities=9% Similarity=-0.034 Sum_probs=217.7
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHH-HHHHhHh--CCCC--CHHHHHHHHHHhccCchhhHHHHHH
Q 006364 304 ESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQ-AFFGVIK--ESKP--NAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 304 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~--~~~p--~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
+.++.+...|+.+...+.. ++...|++++|++ .|.+... ...| +...+..+...+...| +++.|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~ 85 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG--DLPNAVL 85 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT--CHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC--CHHHHHH
Confidence 3445555555555443322 3445588999998 8887765 2222 4566778888899999 9999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVR 455 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 455 (648)
.+..+.+.. +.+...+..+...|.+.|++++|.+.|+...+ .+..+|..+...|...|++++|+..|+++....
T Consensus 86 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 86 LFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999999865 45678889999999999999999999997653 478899999999999999999999999999853
Q ss_pred CCH-HHHHH---------------HHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 456 PDS-ITFLS---------------VLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 456 p~~-~t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
|+. ..+.. .+..+...|++++|..+|+.+.+...-.++..++..+...|.+.|++++|...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 22211 23334488999999999999987633222488999999999999999999999988
Q ss_pred CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCce
Q 006364 520 IP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGF 597 (648)
Q Consensus 520 ~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 597 (648)
+. .+.+..+|..++..+...|++++|...+++++++.|.++..+..++.+|...|++++|.+.+++..+.. |+...
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 320 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRG 320 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC--
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCC
Confidence 65 445688999999999999999999999999999999999999999999999999999999999886532 21100
Q ss_pred eEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 598 SWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 598 s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
. ....+|....++..+..+...+.
T Consensus 321 ~---------------~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 321 P---------------RGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp -------------------CCCCCHHHHHHHHHHHHHHT
T ss_pred c---------------cccccchhhHHHHHHHHHHHHhC
Confidence 0 01235666677777766666554
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=7.3e-16 Score=151.37 Aligned_cols=256 Identities=10% Similarity=-0.020 Sum_probs=182.7
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMY 402 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (648)
.|..+...+...|++++|+..|+++....+.+..++..+..++...| +.+.|...+..+.+.. +.+...+..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE--KDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34444444555555555555555554433334444445555555555 5555555555555442 22445555666666
Q ss_pred hhcCCHHHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006364 403 GKRGSIFESQRVFNETQEK---SEFAWTAI--------------IS-ALARHGDYESVMNQFKEMENKGVRPDSITFLSV 464 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 464 (648)
...|++++|.+.|+...+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6666666666666654421 22222222 22 3677888999999999998752 3367888888
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|..+++.+.+. .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998765 565 7889999999999999999999998865 34567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPA------------GSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
++.|...++++.+..|. ++..+..++.+|...|++++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999998 788999999999999999999998864
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=175.18 Aligned_cols=132 Identities=11% Similarity=0.170 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006364 388 LDSDPIVGSALLDMYGKRGSIFESQRVFNETQ-------EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSIT 460 (648)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 460 (648)
...-..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997764 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 461 FLSVLTVCGRNGM-IHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 461 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
|+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999997 57899999999888 99999999999998877765555554443333
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.3e-14 Score=150.60 Aligned_cols=373 Identities=10% Similarity=-0.007 Sum_probs=243.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhcCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCch
Q 006364 193 HVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMISMNREDAVSLFKEMRLDGVCP-NDVTFIGLIHAISIGNLV 271 (648)
Q Consensus 193 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 271 (648)
....||.|-..|...|+.++|++.| ++|++++.........| ...+|+.+...|...|++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~-------------------~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECL-------------------RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHH-------------------HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH-------------------HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 4567888999999999999999987 46666666554333334 346788888899999999
Q ss_pred HHHHHHHHHHHHhc--C----C-CCchhHHHHHHHHHhc--CChHHHHHHHhhcCC--C-CcccHHHHHHH---HHhcCC
Q 006364 272 KEGRMIHGLCIKTN--F----L-SEPSVCNCLITMYARF--ESMQDSEKVFDELSC--R-EIISWNALISG---YAQNGL 336 (648)
Q Consensus 272 ~~a~~~~~~~~~~~--~----~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~g~ 336 (648)
++|...++...+.. + . ....++..+..++.+. +++++|...|++..+ | ++..+..+... +...++
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 99999988876531 1 1 1234555555555554 468899999988642 3 44455554444 445678
Q ss_pred cHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 337 SLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 337 ~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
.++|++.|++..+-.+.+..++..+...+.. .+ ..+++...+....... +.+..++..+...|.+.|++++|.
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~--~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGE--EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 8899999988877444556666555544433 34 6778888888887765 346677888999999999999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHhC-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 413 RVFNETQE--K-SEFAWTAIISALARH-------------------GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 413 ~~~~~~~~--~-~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
..|+...+ | +..+|..+..+|... +..++|+..|++..+.. +.+..++..+...+..
T Consensus 268 ~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 268 ELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 99987653 3 556677666665432 23567888888877642 2334667788888999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHH-HHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPD----HYSCMVD-MLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 544 (648)
.|++++|+..|++..+. .|+.. .+..+.. .+...|++++|+..+++.. ..|+...+.. ....
T Consensus 347 ~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHH
T ss_pred hccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHH
Confidence 99999999999998754 44322 2333333 3456789999999888754 4454433322 2344
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEE
Q 006364 545 GERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWA 600 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 600 (648)
+++++++.++.+|.++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 56778888899999999999999999999999999999998877665444445554
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.8e-13 Score=142.34 Aligned_cols=336 Identities=11% Similarity=0.036 Sum_probs=274.5
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCC
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISI----GNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FES 305 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 305 (648)
+++++|+..|++....| +...+..+-..+.. .++.++|...+....+.| ++..+..|..+|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 34555666666665543 45566667777777 899999999999998865 56777788888888 789
Q ss_pred hHHHHHHHhhcCCC-CcccHHHHHHHHHh----cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHH
Q 006364 306 MQDSEKVFDELSCR-EIISWNALISGYAQ----NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHG 376 (648)
Q Consensus 306 ~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a 376 (648)
+++|...|+...+. ++..+..+...|.. .+++++|++.|++..+. .+...+..+-..+.. .+ +.+.|
T Consensus 131 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A 206 (490)
T 2xm6_A 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVER--NDAIS 206 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCc--CHHHH
Confidence 99999999987644 56778888888887 78999999999998873 256677777777765 66 99999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHH
Q 006364 377 QRCHSHIIKVGLDSDPIVGSALLDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALAR----HGDYESVMNQFK 447 (648)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 447 (648)
...+....+.| ++..+..+..+|.. .+++++|.++|+...+ .+...+..+...|.. .++.++|+..|+
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99999998875 56677888888886 8999999999998765 467788888888888 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhh
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRN-----GMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG---RLEEAEELVGQ 519 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 519 (648)
+..+.| +...+..+...+... +++++|+..|+...+. + +...+..+...|.+.| ++++|.+.+++
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 998764 445666666777666 8999999999998764 2 4567788888888766 88999999998
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCCC
Q 006364 520 IPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 591 (648)
.....++..+..|...+.. .++.++|...++++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7756788899999999998 899999999999998864 57899999999998 8999999999999887663
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=4.1e-15 Score=142.59 Aligned_cols=245 Identities=9% Similarity=0.015 Sum_probs=200.8
Q ss_pred HHHHHhcCCcHHHHHHHHHhHhCCCCCH--HHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIKESKPNA--YTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR 405 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~~~~p~~--~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (648)
|.-....|++..|+..++.... ..|+. .....+..++...| +.+.+...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~-~~p~~~~e~~~~l~r~yi~~g--~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP-SSPERDVERDVFLYRAYLAQR--KYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHTT--CHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc-CCchhhHHHHHHHHHHHHHCC--CHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3455678999999999887644 22332 34456778889899 88888875543 2456777888999999999
Q ss_pred CCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 406 GSIFESQRVFNETQ----EK-SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 406 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
|+.++|.+.++.+. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 566788888999999999999999987 45678888999999999999999999
Q ss_pred HHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 481 FDSMLKDYHIEPSPDH---YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
|+.+.+. .|+... ...++..+...|++++|..+|+++. .+.++..|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999866 576321 2234455556699999999999876 5578889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCcHH-HHHHHHHHhh
Q 006364 556 EPAGSGSYVLMSNLYAEKGDWEM-VAILRKGMKS 588 (648)
Q Consensus 556 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 588 (648)
+|+++.++..++.++...|++++ +.++++++.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987 5688887764
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=174.57 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=111.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHhccCC-------CCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006364 92 VYVGNALITMYSRWGRLVEARRVFDEMP-------NKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTS 164 (648)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 164 (648)
..+||+||++|++.|++++|.++|++|. .||++|||+||.+||+.| ..++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3589999999999999999999997653 489999999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCCCh-hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCC
Q 006364 165 AASACGHEKNL-ELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMH 221 (648)
Q Consensus 165 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 221 (648)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999998875 7888999999999999999999999888777766665555544443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.2e-14 Score=133.04 Aligned_cols=192 Identities=11% Similarity=0.010 Sum_probs=159.3
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSV 464 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 464 (648)
++++..+..+...+.+.|++++|...|+...+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45677788889999999999999999997654 36788999999999999999999999999984 454 5778888
Q ss_pred HHHhccc-----------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHH
Q 006364 465 LTVCGRN-----------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQ 530 (648)
Q Consensus 465 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 530 (648)
..++... |++++|+..|++..+. .|+ ...+..+..+|...|++++|...+++.. . .++..|.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8889999 9999999999999865 786 8899999999999999999999998764 4 7888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 531 SLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 531 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
.+..++...|++++|...++++++.+|+++..+..++.++...|++++|.+.+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988643
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=1e-13 Score=135.85 Aligned_cols=272 Identities=9% Similarity=-0.027 Sum_probs=152.9
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHHHHHhhcC---CCCcccHHHHHHHH
Q 006364 255 DVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSEKVFDELS---CREIISWNALISGY 331 (648)
Q Consensus 255 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 331 (648)
...+......+...|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3445566667777888888888888877754 3456677777888888888888888887764 23556777778888
Q ss_pred HhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHH-HH-HHhhcCCHH
Q 006364 332 AQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSAL-LD-MYGKRGSIF 409 (648)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~ 409 (648)
...|++++|+..|+++....+.+...+..+...+ |+......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 8888888888888887763332332222221000 000000011 11 244444555
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 410 ESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 410 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+|.+.++.+.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555544331 234455555555555566666666665555431 22345555555555666666666666665544
Q ss_pred hcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 487 DYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-------------GLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 487 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
. .|+ ...+..+...+.+.|++++|.+.++++. ..| +..+|..+..++...|+.+.|..++++
T Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 I---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred c---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 333 5555566666666666666666655443 111 245566666666666666666666655
Q ss_pred HHhc
Q 006364 552 LMKM 555 (648)
Q Consensus 552 ~~~~ 555 (648)
.++.
T Consensus 312 ~l~~ 315 (327)
T 3cv0_A 312 NVEP 315 (327)
T ss_dssp CSHH
T ss_pred HHHh
Confidence 4443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.3e-14 Score=132.75 Aligned_cols=212 Identities=8% Similarity=-0.017 Sum_probs=165.0
Q ss_pred HHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C-------hhHHHHHH
Q 006364 361 VLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S-------EFAWTAII 430 (648)
Q Consensus 361 ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li 430 (648)
+...+...| +++.|...+..+.+.. .+...+..+...|...|++++|.+.|+...+ | + ..+|..+.
T Consensus 11 ~g~~~~~~~--~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 11 EGNKFYKAR--QFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333344444 4444444444444444 4455566666666667777777777665543 1 1 46788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR 509 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~ 509 (648)
..|...|++++|+..|++... ..|+.. .+...|++++|...++.+... .|+ ...+..+...+...|+
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcC
Confidence 999999999999999999888 345533 355668899999999998743 665 7888999999999999
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+++|...+++.. .+.+..+|..+...+...|+++.|...++++++..|+++..|..++.+|...|++++|.+.+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998865 445688899999999999999999999999999999999999999999999999999999998876
Q ss_pred h
Q 006364 588 S 588 (648)
Q Consensus 588 ~ 588 (648)
+
T Consensus 235 ~ 235 (258)
T 3uq3_A 235 T 235 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.4e-13 Score=142.70 Aligned_cols=341 Identities=12% Similarity=0.006 Sum_probs=170.4
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCC-------C---C-chhhH----HHhc---CChhhHHHHHHHHHHCCCCCCh
Q 006364 194 VSVGNVLMSTYSKCEVTGDANKVFRRMHD-------R---N-VISWT----TMIS---MNREDAVSLFKEMRLDGVCPND 255 (648)
Q Consensus 194 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---~-~~~~~----~li~---g~~~~a~~~~~~m~~~g~~p~~ 255 (648)
..+|+.+..+|...|++++|...++.... + + ..+++ +++. +++++|++.|++.... .|+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~ 171 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKN 171 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCC
Confidence 34677788888888999888887765421 1 1 11111 1111 4566666666665543 3433
Q ss_pred h-hHHHHHHH---HhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChHHHHHHHhhcC---CCCcccH
Q 006364 256 V-TFIGLIHA---ISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYAR----FESMQDSEKVFDELS---CREIISW 324 (648)
Q Consensus 256 ~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~---~~~~~~~ 324 (648)
. .+..+..+ +...++.+.|.+.++..++.. +.+..++..+...+.. .|+.++|.+.+++.. ..+...+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 2 22222222 233455555666665555543 2233334333333333 344555666655442 2234455
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Q 006364 325 NALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK 404 (648)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (648)
..+...|...|++++|+..|++..+..+.+..++..+...+...+ ....... ..........
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~--~~~~~~~----------------~~~~~~~~~~ 312 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV--FQVMNLR----------------ENGMYGKRKL 312 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--HHHHHC----------------------CHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HHhhhHH----------------HHHHHHHHHH
Confidence 666666666666666666666665533334444444333322111 0000000 0000001111
Q ss_pred cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCcHHHHH
Q 006364 405 RGSIFESQRVFNETQ---EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSI--TFLSVLT-VCGRNGMIHKGR 478 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~ 478 (648)
.+..+.|...|+... ..+..+|..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|+
T Consensus 313 ~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 234567777776554 3466789999999999999999999999998854333321 2222222 235789999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 479 HLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
..|++..+ +.|+........ +.+.++++... .+.++.+|..|+..+...|++++|.+.|+++++++
T Consensus 393 ~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 393 HHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999874 577643332222 22333333322 34567789999999999999999999999999999
Q ss_pred CCCchhHHHHH
Q 006364 557 PAGSGSYVLMS 567 (648)
Q Consensus 557 p~~~~~~~~l~ 567 (648)
|.+|.++..+|
T Consensus 461 ~~~p~a~~~~G 471 (472)
T 4g1t_A 461 SLIPSASSWNG 471 (472)
T ss_dssp -----------
T ss_pred CCCCcHhhcCC
Confidence 99888776655
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8.4e-14 Score=131.34 Aligned_cols=233 Identities=10% Similarity=0.013 Sum_probs=171.1
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC--Cc----hhHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD--SD----PIVG 395 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 395 (648)
.|..+...+...|++++|+..|++... . .+...+..+..++...| +.+.|...+....+.... ++ ...+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 344555556666666666666666655 4 55556666666666666 666666666665543211 11 4667
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcH
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMI 474 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 474 (648)
..+...|.+.|++++|...|+...+.+.. ...+...|++++|+..++++... .|+ ...+..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 77888888888888888888876542111 24566678889999999998874 343 46777888888999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
++|...|+.+.+. .|+ ...+..+...+.+.|++++|...+++.. .+.+...|..+...+...|+++.|...+++
T Consensus 156 ~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998765 454 7889999999999999999999998765 345678899999999999999999999999
Q ss_pred HHhcC------CCCchhHHHHHHH
Q 006364 552 LMKME------PAGSGSYVLMSNL 569 (648)
Q Consensus 552 ~~~~~------p~~~~~~~~l~~~ 569 (648)
+.++. |.+...+..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99988 7777777666554
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.6e-13 Score=129.23 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCc
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSC---REIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAE 369 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~ 369 (648)
+......+...|++++|...|++..+ .+...|..+...|...|++++|+..|++... .+++..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------------- 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK------------- 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-------------
Confidence 33444555556666666666555431 2334555555555555555555555555544 111110
Q ss_pred hhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHH
Q 006364 370 DISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQF 446 (648)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (648)
.....+..+...|...|++++|.+.|+...+ .+..+|..+...|...|++++|+..|
T Consensus 72 --------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 72 --------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0112245566666666666666666665442 34566777777777777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC---HHHHHHHHhhCC
Q 006364 447 KEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR---LEEAEELVGQIP 521 (648)
Q Consensus 447 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 521 (648)
++..+. .|+ ...+..+...+...+++++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...+++..
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 776653 333 444544442343445778888887777654 555 6666667777777776 666666655543
Q ss_pred ----CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 522 ----GGPG------LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 522 ----~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
..|+ ..+|..+...+...|+++.|...++++++++|+++.++..+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1233 2567778888999999999999999999999999988888877766544
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=8.2e-13 Score=124.13 Aligned_cols=196 Identities=10% Similarity=-0.022 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
...+..+...|...|++++|.+.|+.+.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788888899999999999987653 367788899999999999999999999988752 33567888888889
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
...|++++|.++++.+.+ .+..|+ ...+..+...+.+.|++++|...++++. .+.+...|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 245675 7788889999999999999999998765 344678888999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=5.1e-13 Score=127.37 Aligned_cols=239 Identities=8% Similarity=-0.083 Sum_probs=176.5
Q ss_pred cCCcHHHHHHHHHhHhC-C---CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHH
Q 006364 334 NGLSLAAVQAFFGVIKE-S---KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIF 409 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~~-~---~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (648)
.|++++|+..|+++... . +.+..++..+...+...| +.+.|...+..+.+.. +.+...+..+...|...|+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35566666666666652 1 113445556666666666 6777777777666654 335677788888888889999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 410 ESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 410 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+|.+.|+...+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998887653 3678899999999999999999999999988 456655555555666778999999999988876
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 487 DYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG-PG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.. .++...+ .++..+...++.++|...+++.... |. ..+|..+...+...|++++|...++++++.+|.+.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 52 2334444 3677788888899999999886633 32 57888999999999999999999999999999876
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHH
Q 006364 561 GSYVLMSNLYAEKGDWEMVAILR 583 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~ 583 (648)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 554 66788889998887765
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.3e-12 Score=120.19 Aligned_cols=196 Identities=9% Similarity=-0.003 Sum_probs=165.1
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV 467 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 467 (648)
++..+..+...|...|++++|.+.|+...+ .+...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456677788888899999999999887653 357788889999999999999999999988752 3356788888888
Q ss_pred hccc-CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 468 CGRN-GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 468 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
+... |++++|..+++.+.+ .+..|+ ...+..+...+...|++++|...++++. .+.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8999 999999999999876 244565 7788889999999999999999988765 3345788888999999999999
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEP-AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+|...++++.+..| .++..+..++.++...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999 8889999999999999999999999888764
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=5.1e-13 Score=124.68 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=144.0
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.....+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455666777788888888888888887654 356788888888889999999999999888752 335677788888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...|++++|.++++++.+. .| +...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 888899999999999888765 44 47788888888999999999999888765 3456778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 544 MGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.|...++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999998888999999999999999999999888765
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1e-11 Score=118.22 Aligned_cols=189 Identities=7% Similarity=-0.058 Sum_probs=132.7
Q ss_pred hHHHHHHHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006364 393 IVGSALLDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALAR----HGDYESVMNQFKEMENKGVRPDSITFLS 463 (648)
Q Consensus 393 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 463 (648)
..+..+...|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHH
Confidence 344455555555 6677777776665543 255666677777777 777777777777777654 5566666
Q ss_pred HHHHhcc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006364 464 VLTVCGR----NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGA 535 (648)
Q Consensus 464 ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 535 (648)
+...+.. .|++++|+..|++..+. + +...+..+...|.. .+++++|...+++.....++..+..+...
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 191 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666766 77788888877777654 2 45566667777776 77888888777766544556677777777
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCC
Q 006364 536 CRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 536 ~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 590 (648)
+.. .+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 7888888888888877765 5677788888887 788888888887766554
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=4.3e-12 Score=112.68 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSC 499 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 499 (648)
+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567788888888888888888888888774 44 4567778888888889999999888888654 555 677777
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 577 (648)
+...+...+++++|...+.+.. .+.+...+..+...+...|++++|.+.++++++.+|.++.+|..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888888899999988887754 44567788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 006364 578 MVAILRKGMKSK 589 (648)
Q Consensus 578 ~a~~~~~~m~~~ 589 (648)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999877653
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=3.8e-12 Score=126.10 Aligned_cols=244 Identities=9% Similarity=0.041 Sum_probs=190.8
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhh-HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDIS-LKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
..|+.+...+...|++++|+..|++...-.+-+...|..+..++...| . +++|...+..+++... -+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 456667777777788888888888777744556677777777777777 6 7888888888777653 36677888888
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcc-cCcHH
Q 006364 401 MYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGR-NGMIH 475 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~ 475 (648)
+|.+.|++++|+..|+...+ .+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 88889999999999987763 47788999999999999999999999999884 44 46778888888877 56546
Q ss_pred HH-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC--CHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC------
Q 006364 476 KG-----RHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG--RLEEAEELVGQIPGG-PGLSVLQSLLGACRIHG------ 540 (648)
Q Consensus 476 ~a-----~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g------ 540 (648)
+| +..|++.++. .|+ ...|..+..+|.+.| ++++|.+.+.++... .+...+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 5788888754 786 788888999998888 689999888877433 45677888888888764
Q ss_pred --C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 006364 541 --N-VEMGERIADAL-MKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 541 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 573 (648)
+ .++|.++++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999999998888877643
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.7e-12 Score=121.17 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=147.2
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDM 401 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 401 (648)
..|..+...+...|++++|+..|++.....+. +...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-------------------------------------~~~~~~~la~~ 66 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-------------------------------------DAIPYINFANL 66 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-------------------------------------cHHHHHHHHHH
Confidence 45555556666666666666666655542222 34445555566
Q ss_pred HhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 478 (648)
|.+.|++++|.+.|+...+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 6666677777666665442 356778888888888999999999999888752 345677888888889999999999
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 479 HLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
.+++++.+. .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+...+...|+.+.|...++++.+.
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999998765 454 7888899999999999999999998765 3456788999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcC
Q 006364 556 EPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 556 ~p~~~~~~~~l~~~~~~~g 574 (648)
.|+++..+..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999998888776665444
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=6.5e-12 Score=128.55 Aligned_cols=333 Identities=13% Similarity=0.048 Sum_probs=144.5
Q ss_pred CChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCch---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----C
Q 006364 234 MNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLV---KEGRMIHGLCIKTNFLSEPSVCNCLITMYARFE-----S 305 (648)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 305 (648)
|++++|+++|++....|- ...+..+-..+...|+. ++|...+....+. ++..+..|..++...+ +
T Consensus 17 g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 556666666666555442 22222233333334444 5555555555433 3333444444333333 4
Q ss_pred hHHHHHHHhhcCCC-CcccHHHHHHHHHhcCCcHH---HHHHHHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHH
Q 006364 306 MQDSEKVFDELSCR-EIISWNALISGYAQNGLSLA---AVQAFFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCH 380 (648)
Q Consensus 306 ~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~ 380 (648)
.++|...|++...+ +...+..|...|...+...+ +.+.+..... +. ......+...+...+ ..+.+....
T Consensus 90 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~--~~~~~~~~a 164 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG--TYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT--CGGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC--CcccCHHHH
Confidence 45555555554322 33455555555554443222 2233332222 22 112222222222222 122222211
Q ss_pred HHHHHhCCCCchhHHHHHHHHHhhcC---CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhC----CChHHHHHHHHHHH
Q 006364 381 SHIIKVGLDSDPIVGSALLDMYGKRG---SIFESQRVFNETQEK---SEFAWTAIISALARH----GDYESVMNQFKEME 450 (648)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 450 (648)
....+.-...++..+..|..+|.+.| +.++|.+.|....+. +...+..+...|... +++++|+..|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 12222222223335556666666666 666666666554322 222334455555433 46666666666654
Q ss_pred HCCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHhhCCC
Q 006364 451 NKGVRPDSITFLSVLTV-C--GRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG-----RLEEAEELVGQIPG 522 (648)
Q Consensus 451 ~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 522 (648)
.| +...+..+... + ...|++++|.+.|++..+. | +...+..|...|. .| ++++|...|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 22 22333333333 2 3456666666666665433 2 3445555555554 33 6666666666655
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCcHHHHHHHHHHhhCC
Q 006364 523 GPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE----KGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 590 (648)
+.++..+..|...|.. ..|.++|...++++.+. .++.....|+.+|.. ..+.++|...+++..+.|
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555555555555444 22666666666665543 344556666666654 335666666666555544
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.6e-11 Score=116.84 Aligned_cols=226 Identities=9% Similarity=-0.064 Sum_probs=166.9
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc----CchhhHHHHHHHHHHHHHhCCCCchhHHHH
Q 006364 322 ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA----AEDISLKHGQRCHSHIIKVGLDSDPIVGSA 397 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (648)
.++..+...+...|++++|+..|++..+ +.+..++..+...+.. .+ +.++|...+....+.+ ++..+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444445555555555555555555554 2233444444455555 55 6666666666666654 5666677
Q ss_pred HHHHHhh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 398 LLDMYGK----RGSIFESQRVFNETQE-KSEFAWTAIISALAR----HGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 398 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
+...|.. .+++++|.+.|+...+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 8888888888886654 367788888888888 899999999999998865 556666777777
Q ss_pred cc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--
Q 006364 469 GR----NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVLQSLLGACRI-- 538 (648)
Q Consensus 469 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 538 (648)
.. .+++++|+..|+...+. .+...+..+...|.. .+++++|...+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 76 89999999999998754 246778888899998 99999999999886644457788888889988
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCch
Q 006364 539 --HGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 539 --~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
.++.++|...++++.+.+|+++.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887543
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=1e-11 Score=116.60 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=152.8
Q ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 321 IISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
...|..+...+...|++++|+..|+++....+. +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-------------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------------------------------hHHHHHHHHH
Confidence 456667777777777777777777766542222 3344455555
Q ss_pred HHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHH
Q 006364 401 MYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHK 476 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 476 (648)
.|...|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++...+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666665432 3556777788888888888888888888876434454 4667777888888999999
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
|..+|+.+.+. .|+ ...+..++..+.+.|++++|...++++. .+.+...+..+...+...|+.+.|.+.++++.
T Consensus 160 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999888765 454 7788889999999999999999988764 34567778888889999999999999999999
Q ss_pred hcCCCCchhHHH
Q 006364 554 KMEPAGSGSYVL 565 (648)
Q Consensus 554 ~~~p~~~~~~~~ 565 (648)
+..|+++.....
T Consensus 237 ~~~p~~~~~~~~ 248 (252)
T 2ho1_A 237 RLYPGSLEYQEF 248 (252)
T ss_dssp HHCTTSHHHHHH
T ss_pred HHCCCCHHHHHH
Confidence 999998766543
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=2.5e-12 Score=132.55 Aligned_cols=208 Identities=6% Similarity=-0.037 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSI-FESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFK 447 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (648)
..+.+...+...... .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555543332 234677788888888899999 999999987653 357799999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccc---------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CC
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRN---------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV--------GR 509 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~--------g~ 509 (648)
+..+ ..|+...+..+...+... |++++|++.|++..+. .|+ ...|..+..+|... |+
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9998 468888889999999999 9999999999999865 676 88999999999999 99
Q ss_pred HHHHHHHHhhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHH
Q 006364 510 LEEAEELVGQIP-GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 510 ~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (648)
+++|...+++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999875 234 788999999999999999999999999999999999999999999999999999987554
Q ss_pred H
Q 006364 585 G 585 (648)
Q Consensus 585 ~ 585 (648)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.9e-11 Score=112.27 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=137.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARH-GDYESVMNQFKEMENKGVRPD-SITFLSVLT 466 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 466 (648)
...+..+...|...|++++|.+.|+...+ .+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 44555666667777777777777766542 3566788888888999 999999999999887434444 467788888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC-CCHHHHHHHHHHHHHcCCH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GG-PGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~ 542 (648)
++...|++++|...++.+.+. .|+ ...+..++..+.+.|++++|...++++. .+ .+...+..+...+...|+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 899999999999999998765 565 7888899999999999999999998765 33 5677787777888999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH
Q 006364 543 EMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+.+...++.+.+..|+++.....+
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999999998776554
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=6.1e-12 Score=114.92 Aligned_cols=193 Identities=11% Similarity=-0.002 Sum_probs=110.1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHH
Q 006364 287 LSEPSVCNCLITMYARFESMQDSEKVFDELSCR---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLN 363 (648)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~ 363 (648)
+++...+..+...+.+.|++++|...|++.... +...|..+...+.+.|++++|+..|++..+..+.+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------- 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------- 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------
Confidence 344555555555566666666666655554322 3344555555555555555555555555442222333
Q ss_pred HhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc-----------CCHHHHHHHHhhcCC--C-ChhHHHHH
Q 006364 364 AVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR-----------GSIFESQRVFNETQE--K-SEFAWTAI 429 (648)
Q Consensus 364 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l 429 (648)
.+..+...|.+. |++++|...|+...+ | +...|..+
T Consensus 75 ------------------------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 75 ------------------------------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 333444444444 677777777765542 2 45677777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 006364 430 ISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG 508 (648)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g 508 (648)
...|...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++.+.|
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcc
Confidence 777778888888888888877765 56677777777777888888888888877654 565 667777777777888
Q ss_pred CHHHHHHHHhhCC
Q 006364 509 RLEEAEELVGQIP 521 (648)
Q Consensus 509 ~~~~A~~~~~~~~ 521 (648)
++++|...+++..
T Consensus 200 ~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 200 KAEEAARAAALEH 212 (217)
T ss_dssp -------------
T ss_pred CHHHHHHHHHHHh
Confidence 8888777776543
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.1e-11 Score=117.95 Aligned_cols=213 Identities=7% Similarity=-0.012 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--KS----EFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
+++.|...+..+.+.. +.+...+..+...|...|++++|.+.|+...+ ++ ..+|..+...+...|++++|+..
T Consensus 18 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp CHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4455555555444432 22344666777788888888888888887654 22 23488999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--G 522 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 522 (648)
|++..+.. +.+..++..+...+...|++++|+..|++.. .+.|+ ...+..+...+...+++++|.+.++++. .
T Consensus 97 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 97 YQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998852 3346788999999999999999999999886 44776 7788888834444569999999998865 3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 523 GPGLSVLQSLLGACRIHGN---VEMGERIADALMKME---PAG-----SGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+.+...+..+...+...|+ .+.|...++++.+.. |+. ..+|..++.+|...|++++|.+.+++..+.
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4457788888888888888 888999999999875 442 258889999999999999999999988753
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=2.6e-11 Score=124.02 Aligned_cols=363 Identities=11% Similarity=0.040 Sum_probs=190.6
Q ss_pred hcCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh---HHHHHHHhcCCCCCchhhHHH---hc-------CC
Q 006364 169 CGHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVT---GDANKVFRRMHDRNVISWTTM---IS-------MN 235 (648)
Q Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l---i~-------g~ 235 (648)
+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|...|+...+.++..+..+ +. ++
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344455555555555555544 223333344444445555 555555554443222111111 00 14
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHH---HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC----hHH
Q 006364 236 REDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKE---GRMIHGLCIKTNFLSEPSVCNCLITMYARFES----MQD 308 (648)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~ 308 (648)
.++|+..|++....|.. ..+..+-..|...+..+. +.+.+......| ++.....|...|...+. .+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 45566666655554422 234444444443333222 222233222222 23444555555555553 333
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhcC---CcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Q 006364 309 SEKVFDELSCREIISWNALISGYAQNG---LSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIK 385 (648)
Q Consensus 309 a~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~ 385 (648)
+..+++.....++..+..|...|...| +.++|++.|++......++...+
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~--------------------------- 216 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV--------------------------- 216 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH---------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH---------------------------
Confidence 444444445555556666666666666 55555555555544333333322
Q ss_pred hCCCCchhHHHHHHHHHhhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCH
Q 006364 386 VGLDSDPIVGSALLDMYGKR----GSIFESQRVFNETQEKSEFAWTAIISA-L--ARHGDYESVMNQFKEMENKGVRPDS 458 (648)
Q Consensus 386 ~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~ 458 (648)
..|..+|... +++++|.++|+.....+...+..+... | ...++.++|+..|++..+.| +.
T Consensus 217 ----------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 217 ----------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp ----------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred ----------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 3334444332 577777777776663356667777666 3 45788888998888888776 45
Q ss_pred HHHHHHHHHhcccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHH
Q 006364 459 ITFLSVLTVCGRNG-----MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPGLSVL 529 (648)
Q Consensus 459 ~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 529 (648)
..+..+...|. .| ++++|...|+... .-+...+..|...|.. ..++++|...+++.....++...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 55556665555 44 8899999988764 2346777777777766 34889999999887655556666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--hcCCcHHHHHHHHHHhh
Q 006364 530 QSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYA--EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 530 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 588 (648)
..|...|.. ..|.+.|...++++.+.++.+.. ..+..+.. ..++..+|.++.++.+.
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~--~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEAN--DLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHH--HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 677766653 45889999999998887765433 33444432 33456666666655443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=2.9e-12 Score=129.75 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=130.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhcCC--C-C----cccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHH
Q 006364 289 EPSVCNCLITMYARFESMQDSEKVFDELSC--R-E----IISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFG 359 (648)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~ 359 (648)
....+......+...|++++|...|++... + + ...|..+...|...|++++|+..|++... ....+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--- 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL--- 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH---
Confidence 334455566677777777777777776542 2 2 13566666777777777777777776543 1001100
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHH
Q 006364 360 SVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAII 430 (648)
Q Consensus 360 ~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li 430 (648)
.....+..+...|...|++++|...+++..+ ++ ..++..+.
T Consensus 85 ------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 85 ------------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 0122333344444444555555444443321 11 22444455
Q ss_pred HHHHhCCC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 431 SALARHGD--------------------YESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 431 ~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
..|...|+ +++|+..+++.... +-.|. ..++..+...+...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555 55555555544321 11111 1234444555555555555555555544
Q ss_pred HhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 486 KDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIP----GGPG----LSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 486 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
+...-.++ ...+..+...|...|++++|...+++.. ..++ ..++..+...+...|+++.|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 32111111 2245555555555555555555554432 0011 3344555555555566666665555555
Q ss_pred hcCCCC------chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 554 KMEPAG------SGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 554 ~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
++.+.. ..++..++.+|...|++++|.+.+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543222 335555555666666666665555543
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=8.1e-12 Score=123.77 Aligned_cols=223 Identities=10% Similarity=0.024 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCC-HHHHHHHHhhcCC---CChhHHHHHH
Q 006364 355 AYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGS-IFESQRVFNETQE---KSEFAWTAII 430 (648)
Q Consensus 355 ~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li 430 (648)
...|..+...+...+ +.++|...+..+++.. +.+...|+.+...|.+.|+ +++|+..|++..+ .+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g--~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDE--RSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 345666667777788 9999999999999875 3467788999999999997 9999999998764 4778999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh-c
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGR-V 507 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~-~ 507 (648)
.++...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+++++. .|+ ...|..+..+|.+ .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999984 44 5688999999999999999999999999865 776 8899999999999 6
Q ss_pred CCHHHH-----HHHHhhCC--CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC----
Q 006364 508 GRLEEA-----EELVGQIP--GGPGLSVLQSLLGACRIHG--NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG---- 574 (648)
Q Consensus 508 g~~~~A-----~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---- 574 (648)
|..++| +..+++.. .+.+...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 665888 46676654 3456789999999998888 689999999998 889999999999999999975
Q ss_pred -----CcHHHHHHHHHH
Q 006364 575 -----DWEMVAILRKGM 586 (648)
Q Consensus 575 -----~~~~a~~~~~~m 586 (648)
..++|.++++++
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 258899999887
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=2.1e-12 Score=131.23 Aligned_cols=263 Identities=10% Similarity=-0.040 Sum_probs=172.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCC--C-Cc----ccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhc
Q 006364 294 NCLITMYARFESMQDSEKVFDELSC--R-EI----ISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVG 366 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~ 366 (648)
..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++...-
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------- 115 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---------------- 115 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 3444556666666666666665532 1 21 24555556666666666666666554330
Q ss_pred cCchhhHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHhC
Q 006364 367 AAEDISLKHGQRCHSHIIKVG-LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK---------SEFAWTAIISALARH 436 (648)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 436 (648)
..+.+ .+.....+..+...|...|++++|...|++..+- ...+|..+...|...
T Consensus 116 ----------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 116 ----------------AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00000 0112344556666777777777777777654421 234677777788888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-
Q 006364 437 GD-----------------YESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS- 493 (648)
Q Consensus 437 g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 493 (648)
|+ +++|+..+++..+. +-.|. ..++..+...+...|++++|..++++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888887776542 11122 246677777888889999998888887643211112
Q ss_pred ---hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 006364 494 ---PDHYSCMVDMLGRVGRLEEAEELVGQIPG----G----PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG--- 559 (648)
Q Consensus 494 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--- 559 (648)
...+..+...|...|++++|...+++... . ....++..+...+...|+++.|...+++++++.+..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 34778888889999999999888876541 1 124567788888999999999999999988765432
Q ss_pred ---chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 560 ---SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 560 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...+..++.+|...|++++|.+.+++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44888999999999999999999887643
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=1e-11 Score=125.70 Aligned_cols=291 Identities=9% Similarity=-0.001 Sum_probs=198.9
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChHHHHHHHhhcCC-----C----
Q 006364 253 PNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE----PSVCNCLITMYARFESMQDSEKVFDELSC-----R---- 319 (648)
Q Consensus 253 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~---- 319 (648)
+....+...-..+...|+++.|...++...+.+. .+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3444555666677888999999999998888742 22 24677888889999999999988876531 1
Q ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHH
Q 006364 320 EIISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSA 397 (648)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (648)
...++..+...|...|++++|+..+.+... ...++... ...++..
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~~~~~~~ 132 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG---------------------------------EARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc---------------------------------hHHHHHH
Confidence 235677788888999999999998887765 11111100 1122333
Q ss_pred HHHHHhhcCC--------------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 398 LLDMYGKRGS--------------------IFESQRVFNETQE-------K--SEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 398 li~~~~~~g~--------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
+...|...|+ +++|.+.+....+ + ...+|..+...|...|++++|+..|++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 4444444443221 1 234677778888888888888888888
Q ss_pred HHHCC-CCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 449 MENKG-VRPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQ 519 (648)
Q Consensus 449 m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (648)
..+.. -.++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 76521 1122 236777788888899999999888887643111111 56778888999999999999988876
Q ss_pred CC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCcH
Q 006364 520 IP----GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKME------PAGSGSYVLMSNLYAEKGDWE 577 (648)
Q Consensus 520 ~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 577 (648)
.. ..++ ..++..+...+...|+++.|...+++++++. +....++..++.+|...|+..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 54 1122 4577888889999999999999999998764 233567888999998888764
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=1.8e-11 Score=116.55 Aligned_cols=213 Identities=10% Similarity=-0.004 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHHHHhCCC---CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLD---SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 445 (648)
+.+.|...+..+.+.... .+...+..+...|...|++++|...|+...+ .+..+|..+...|...|++++|+..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 899999999999876432 2467888999999999999999999998753 4688999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GG 523 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 523 (648)
|++..+.. +.+...+..+...+...|++++|...|+.+.+. .|+..........+.+.|++++|...+++.. .+
T Consensus 100 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 100 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 99999852 335788889999999999999999999999865 6764445555556677899999999996654 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA----GSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++...| .++..+...++.+.|...++++.+..|. ++..+..++.+|...|++++|.+.+++..+.
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 343344 4777788888899999999998877663 3688999999999999999999999988754
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=9.4e-12 Score=133.30 Aligned_cols=160 Identities=14% Similarity=0.193 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|++.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45788888888899999999999998887 4555 578888888999999999999999988754 787 8889999
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
..+|.+.|++++|++.+++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998765 345678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 006364 579 VAILRKGMK 587 (648)
Q Consensus 579 a~~~~~~m~ 587 (648)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=4.2e-12 Score=124.71 Aligned_cols=198 Identities=12% Similarity=0.025 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCC--------------------hHHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGD--------------------YESV 442 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 442 (648)
...+..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34566677778888888888888776542 12 3377778888888888 8888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 006364 443 MNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 443 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 513 (648)
+..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888876542 11122 346777778888999999999999887643211122 44788889999999999999
Q ss_pred HHHHhhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCcHHH
Q 006364 514 EELVGQIP----GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 514 ~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 579 (648)
...+++.. ..++ ..++..+...+...|+++.|...++++++..|.. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99887654 1112 4567888889999999999999999998875432 44788999999999999999
Q ss_pred HHHHHHHhhC
Q 006364 580 AILRKGMKSK 589 (648)
Q Consensus 580 ~~~~~~m~~~ 589 (648)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=2.1e-11 Score=108.23 Aligned_cols=167 Identities=9% Similarity=0.006 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006364 390 SDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLT 466 (648)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 466 (648)
.++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567889999999999999999999998653 477899999999999999999999999998752 334566777778
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
.+...++++.+...+....+. .|+ ...+..+...|.+.|++++|++.+++.. .+.+..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999998754 665 8889999999999999999999998865 4567889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 006364 544 MGERIADALMKMEPAGS 560 (648)
Q Consensus 544 ~a~~~~~~~~~~~p~~~ 560 (648)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999998764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.9e-10 Score=111.44 Aligned_cols=218 Identities=10% Similarity=0.045 Sum_probs=145.3
Q ss_pred HHHHHHHHHhHhCCCCCHHHHHHHHHHhcc-------Cchhh-------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHh
Q 006364 338 LAAVQAFFGVIKESKPNAYTFGSVLNAVGA-------AEDIS-------LKHGQRCHSHIIKVGLDSDPIVGSALLDMYG 403 (648)
Q Consensus 338 ~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~-------~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (648)
++|+..|++.....+.+...|..+...+.. .| + .++|..+++..++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455666666655334445555555444432 23 3 2667777776665322334556777777777
Q ss_pred hcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCcHHHHH
Q 006364 404 KRGSIFESQRVFNETQE--K-SEF-AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC-GRNGMIHKGR 478 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 478 (648)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888876654 2 333 78888888888888888888888887742 23344444333222 2368888888
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 479 HLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG----GP--GLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 479 ~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
.+|+...+. .|+ ...|..++..+.+.|++++|..+|++... +| ....|..++......|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888755 454 77778888888888888888888877642 33 356788888888888888888888888
Q ss_pred HHhcCCCCch
Q 006364 552 LMKMEPAGSG 561 (648)
Q Consensus 552 ~~~~~p~~~~ 561 (648)
+.+..|+++.
T Consensus 267 a~~~~p~~~~ 276 (308)
T 2ond_A 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHcccccc
Confidence 8888887553
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=5.5e-11 Score=105.37 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=101.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
|..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|..+++.+.+. .|+ ...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 334444445555555555555544432 1223444555555555566666666666655433 333 55566666666
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 505 GRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
...|++++|.+.++++. .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666543 3345666777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHhh
Q 006364 583 RKGMKS 588 (648)
Q Consensus 583 ~~~m~~ 588 (648)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=4.4e-09 Score=111.31 Aligned_cols=216 Identities=8% Similarity=0.059 Sum_probs=165.1
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhh
Q 006364 339 AAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQ-RCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNE 417 (648)
Q Consensus 339 ~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 417 (648)
.+..+|++.....+-+...|.....-+...+ +.+.+. .++...+.. ++.+...+-..+....+.|+++.|.++|+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777777755556777777766666667 777886 999998864 455677788889999999999999999987
Q ss_pred cCC-------------CC------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHH--HHHHHhc
Q 006364 418 TQE-------------KS------------EFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDSITFL--SVLTVCG 469 (648)
Q Consensus 418 ~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~--~ll~a~~ 469 (648)
+.. |+ ...|...+....+.|+.+.|..+|.+..+. +. +....|. +.+.- .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~-~ 481 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEY-H 481 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHH-T
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH-H
Confidence 653 21 236888888888899999999999999885 21 1233333 23322 2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-C----CHHHHHHHHHHHHHcCCHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGG-P----GLSVLQSLLGACRIHGNVEM 544 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~ 544 (648)
..++.+.|..+|+...+.++ -+...+...++.....|+.+.|..+|++.... | ....|...+..-..+|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 24569999999999988732 23566778888888999999999999986632 3 35689999999999999999
Q ss_pred HHHHHHHHHhcCCCCch
Q 006364 545 GERIADALMKMEPAGSG 561 (648)
Q Consensus 545 a~~~~~~~~~~~p~~~~ 561 (648)
+..+.+++.+..|+++.
T Consensus 560 ~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 99999999999998754
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=6.6e-11 Score=109.12 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE----KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVL 465 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 465 (648)
++..+..+...|.+.|++++|...|+...+ ++...|..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 334444555555555555555555554321 34444444555555555555555555555542 232 23444444
Q ss_pred HHhcccCcHHHHHHHHHHhHHhcCCCCC-h-------HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHH
Q 006364 466 TVCGRNGMIHKGRHLFDSMLKDYHIEPS-P-------DHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG---LSVLQSLL 533 (648)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~ 533 (648)
..+...|++++|+..|++..+. .|+ . ..|..+...+.+.|++++|.+.+++.. ..|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555555555555555555433 232 2 234444444555555555555554433 2232 23344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+... +...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 443222 2333344444444443333222 22233444788888776654
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=1.7e-11 Score=124.39 Aligned_cols=268 Identities=11% Similarity=0.004 Sum_probs=188.7
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhcCChHHHHHHHhhcCCC---------Ccc
Q 006364 256 VTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP----SVCNCLITMYARFESMQDSEKVFDELSCR---------EII 322 (648)
Q Consensus 256 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~ 322 (648)
..+..+...+...|+++.|...++...+.+. .+. .++..+...|...|++++|...|++.... ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444556678899999999999999998742 222 46888899999999999999998876421 235
Q ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 006364 323 SWNALISGYAQNGLSLAAVQAFFGVIK--ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLD 400 (648)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 400 (648)
.+..+...|...|++++|+..|++... ....+. +.....+..+..
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------------~~~~~~~~~l~~ 174 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR---------------------------------LSEGRALYNLGN 174 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch---------------------------------HHHHHHHHHHHH
Confidence 677788888899999999998887654 000010 011223444555
Q ss_pred HHhhcCC-----------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006364 401 MYGKRGS-----------------IFESQRVFNETQE-------K--SEFAWTAIISALARHGDYESVMNQFKEMENKGV 454 (648)
Q Consensus 401 ~~~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 454 (648)
.|...|+ +++|.+.+++..+ + ...+|..+...|...|++++|+..|++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5555555 5555555554321 1 234677788888888899998888888765311
Q ss_pred -CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCC---
Q 006364 455 -RPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIPG--- 522 (648)
Q Consensus 455 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 522 (648)
.++ ..++..+...+...|++++|...+++..+...-..+ ...+..+...|.+.|++++|...+++...
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112 236777888889999999999999887643211111 56788889999999999999998887641
Q ss_pred -CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 523 -GP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 523 -~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
.+ ...++..+...+...|++++|...++++.++.+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 134677888899999999999999999988754
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=7.4e-11 Score=115.72 Aligned_cols=267 Identities=9% Similarity=-0.005 Sum_probs=162.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChHHHHHHHhhcCC-----C----CcccHHHH
Q 006364 261 LIHAISIGNLVKEGRMIHGLCIKTNFLSE----PSVCNCLITMYARFESMQDSEKVFDELSC-----R----EIISWNAL 327 (648)
Q Consensus 261 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l 327 (648)
.-..+...|+++.|...++.+.+... .+ ..++..+...|...|++++|...+++... . ....+..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34456677778888777777777531 12 24566777777778888887777765431 1 13456667
Q ss_pred HHHHHhcCCcHHHHHHHHHhHh--CCCCC----HHHHHHHHHHhccCchhh-------------HHHHHHHHHHHHHhCC
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIK--ESKPN----AYTFGSVLNAVGAAEDIS-------------LKHGQRCHSHIIKVGL 388 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~a~~~~~~~~-------------~~~a~~~~~~~~~~~~ 388 (648)
...|...|++++|+..+.+... ...++ ..++..+...+...| + .+.+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~--------- 158 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG--KSFGCPGPQDTGEFPEDVRNA--------- 158 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HTSSSSSCC----CCHHHHHH---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC--cccccchhhhhhhhhhhHHHH---------
Confidence 7777788888888887777654 11122 113333333333333 3 0000000
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-
Q 006364 389 DSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------K--SEFAWTAIISALARHGDYESVMNQFKEMENKGV-RPD- 457 (648)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 457 (648)
+++|.+.++...+ + ...++..+...+...|++++|+..+++..+... .++
T Consensus 159 -------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 159 -------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 4444444433221 1 133566677777777777777777777654210 111
Q ss_pred ---HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CC--
Q 006364 458 ---SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIPG----GP-- 524 (648)
Q Consensus 458 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-- 524 (648)
..++..+...+...|++++|..+++...+...-.++ ...+..+...+...|++++|...+++... .+
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 236667777778888888888888776543111111 56777888888888888888888876541 11
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 525 --GLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 525 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
...++..+...+...|+++.|...++++.++.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1446777888899999999999999999887654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=5.5e-11 Score=115.34 Aligned_cols=233 Identities=12% Similarity=0.139 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC------
Q 006364 354 NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV-------GLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE------ 420 (648)
Q Consensus 354 ~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 420 (648)
+..++..+...+...| +++.|..++..+.+. ..+.....+..+...|...|++++|...|++..+
T Consensus 26 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888888 888888888887763 3344556777888888888888888888876542
Q ss_pred -C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhc
Q 006364 421 -K----SEFAWTAIISALARHGDYESVMNQFKEMENK------GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 421 -~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 488 (648)
+ ...+|..+...|...|++++|+..|++..+. +-.|+ ...+..+...+...|++++|+++++.+.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 2456778888888888888888888887763 22232 3556777778888888888888888876431
Q ss_pred -----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----------CCC-------HHHHHHHHHHHHHcCCHHHH
Q 006364 489 -----HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG----------GPG-------LSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 489 -----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-------~~~~~~l~~~~~~~g~~~~a 545 (648)
+-.|. ...+..+...|.+.|++++|...++++.. .+. ...+..+...+...+.+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11333 56778888888888888888888876541 011 11222233344455566666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 546 ERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
...++.+....|..+.++..++.+|...|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777888889999999999999999999999987654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=5.2e-10 Score=108.30 Aligned_cols=211 Identities=11% Similarity=0.085 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHh-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHh
Q 006364 374 KHGQRCHSHIIKVGLDSDPIVGSALLDMYG-------KRGSI-------FESQRVFNETQE---K-SEFAWTAIISALAR 435 (648)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 435 (648)
+.+..+|+..++.. +.++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777653 456777777777765 35886 899999997654 3 56689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHh-hcCCHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDS-I-TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLG-RVGRLE 511 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 511 (648)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 45653 3 7888999999999999999999999754 454 555554444422 369999
Q ss_pred HHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 512 EAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM---EPA-GSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 512 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
+|..+|++.. .+.++..|..++..+...|+.+.|..+++++++. .|+ ....|..++..+...|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875 3456889999999999999999999999999996 443 567899999999999999999999998
Q ss_pred HhhCC
Q 006364 586 MKSKG 590 (648)
Q Consensus 586 m~~~~ 590 (648)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87643
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=3.3e-10 Score=104.37 Aligned_cols=207 Identities=11% Similarity=0.055 Sum_probs=164.0
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-ChhHHHH
Q 006364 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE--K-SEFAWTA 428 (648)
Q Consensus 352 ~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 428 (648)
+.|+..+......+...| +.++|...+....+...+++...+..+..+|.+.|++++|.+.|+...+ | +...|..
T Consensus 4 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAK--NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 346678888888899999 9999999999999987657777777799999999999999999998764 3 5678999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC---hHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRPD-S-------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS---PDHY 497 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~ 497 (648)
+...|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|++.|++.. .+.|+ ...|
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~ 156 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHH
Confidence 999999999999999999999884 444 3 457777788899999999999999996 45776 5678
Q ss_pred HHHHHHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 498 SCMVDMLGRVGRL--EEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 498 ~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
..+..+|...|+. ++|..+. ..+...+.... ....+++++|...+++++++.|+++.+...+..+...
T Consensus 157 ~~l~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 157 YSLGVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 8888888776653 3332221 22333343333 3455678999999999999999999988888777543
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=6.3e-10 Score=98.44 Aligned_cols=167 Identities=9% Similarity=-0.051 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC 468 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 468 (648)
...+..+...+...|++++|.+.|+.+.+ .+...|..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 34566778889999999999999998875 36778999999999999999999999999885 234577888888999
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 545 (648)
...|++++|.++++.+.+. .| +...+..+...+...|++++|...++++. .+.+..++..+...+...|+++.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999765 45 47888999999999999999999998865 345678899999999999999999
Q ss_pred HHHHHHHHhcCCCCchh
Q 006364 546 ERIADALMKMEPAGSGS 562 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~ 562 (648)
...++++.+..|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999998887654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=7.6e-10 Score=110.96 Aligned_cols=163 Identities=12% Similarity=0.139 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHh---cCCCCC-hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGV-RPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKD---YHIEPS-PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~ 495 (648)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|+..+++..+. .+..|. ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 455566666666666666666666553200 011 135556666666666666666666665531 012143 55
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHH
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP------GGPG-LSVLQSLLGACRIHGN---VEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
++..+...|.+.|++++|...+++.. ..|. ...+..+...+...|+ .+.|...+++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 66666666777777777766665543 0111 1223445555666666 45555555443 222344456777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777776543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=1.5e-10 Score=119.24 Aligned_cols=177 Identities=9% Similarity=-0.042 Sum_probs=156.5
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQE---KSEFAWTAIISALARHGDY-ESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
.++++.+.++.... .+...|..+...|...|++ ++|+..|++..+. .|+ ...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665443 3678899999999999999 9999999999884 454 788999999999999999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc--------CCH
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRV---------GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH--------GNV 542 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~ 542 (648)
+... .+.|+...+..+..+|... |++++|...+++.. .+.+...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9997 4578889999999999999 99999999999865 455688999999999998 999
Q ss_pred HHHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEP---AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++|...++++++++| .++..|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999998765
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=5.2e-11 Score=115.53 Aligned_cols=240 Identities=14% Similarity=0.124 Sum_probs=143.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhcCC--------C---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHH
Q 006364 290 PSVCNCLITMYARFESMQDSEKVFDELSC--------R---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTF 358 (648)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~ 358 (648)
..++..+...|...|++++|..+|+++.+ . ....+..+...|...|++++|+..|++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------- 97 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA--------- 97 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence 34456666666666777766666665532 1 123455555556666666666665554432
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-------C----ChhHHH
Q 006364 359 GSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-------K----SEFAWT 427 (648)
Q Consensus 359 ~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~ 427 (648)
+.........+.....+..+...|...|++++|.+.|++..+ + ...+|.
T Consensus 98 --------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 98 --------------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp --------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --------------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 000000001122345566777778888888888887776542 1 345678
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhc------CCCCC-
Q 006364 428 AIISALARHGDYESVMNQFKEMENK------GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDY------HIEPS- 493 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~- 493 (648)
.+...+...|++++|+..|+++.+. +..|+ ..++..+...+...|++++|..+++++.+.. ...|.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8888899999999999999988763 22333 3567788888899999999999999887531 11222
Q ss_pred ------hHHHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 494 ------PDHYSCMVDMLGRVGRLEEAEELVGQIPG--GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 494 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
...+..+...+...+.+.+|...++.... +....+|..+...+...|++++|...+++++++.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12223333444455566666666666552 234567888999999999999999999999988764
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=2.4e-09 Score=107.26 Aligned_cols=164 Identities=8% Similarity=0.018 Sum_probs=127.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-H
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-S 458 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 458 (648)
.+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4566777888888888888888876542 11 247888999999999999999999988762 23233 5
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC-hHHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCC-HHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS-PDHYSCMVDMLGRVGR---LEEAEELVGQIPGGPG-LSVLQS 531 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 531 (648)
.++..+...+...|++++|...+++..+...- .|. ...+..+...+...|+ +++|..++++....|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 67888889999999999999999987643211 232 4446778899999999 9999999999865443 346777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 532 LLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
+...+...|+++.|...++++.++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999998764
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=1.2e-08 Score=101.69 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=136.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHH
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQE----------K-SEFAWTAIISALARHGDYESVMNQFKEMENKGVR--P--DSI 459 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 459 (648)
+..+...|...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566777788888888888775532 1 1235666778888899999999999887763221 1 134
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHhhCCCC-CC-----HHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYS-----CMVDMLGRVGRLEEAEELVGQIPGG-PG-----LSV 528 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~ 528 (648)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.... |. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 667777788889999999999988764411111111121 2344577899999999999887521 21 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..+...+...|+.++|...++++.+..+.. ...+..++.+|...|++++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677788889999999999999887754321 24777889999999999999998887654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=9.2e-09 Score=102.78 Aligned_cols=162 Identities=9% Similarity=0.055 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCCC-hHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEPS-PDH 496 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~ 496 (648)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|++.|++..+... ..|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4555566666666666666666655441 11111 23455566666666666666666666654100 1233 555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhCC----C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 497 YSCMVDMLGRVGRLEEAEELVGQIP----G--GPG-LSVLQSLLGACRIHGN---VEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+..+...+.+.|++++|...+++.. . .|. ...+..+...+...++ +..|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 6666666666666666666665432 1 121 2233334444445555 44444444441 1123334556677
Q ss_pred HHHHHhcCCcHHHHHHHHHHh
Q 006364 567 SNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+.+|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777776553
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=6.4e-08 Score=102.47 Aligned_cols=211 Identities=9% Similarity=-0.008 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHhcCCcHHHH-HHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhC----------CCC
Q 006364 322 ISWNALISGYAQNGLSLAAV-QAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVG----------LDS 390 (648)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~----------~~~ 390 (648)
..|-..+.-+...|+.++|. ++|++.....+.+...+...+....+.+ +.+.|..+++.+.+.. .+.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~--~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT--KIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 34444444444445555554 5555544433333333444444444444 5555555555544321 111
Q ss_pred -----------chhHHHHHHHHHhhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCC
Q 006364 391 -----------DPIVGSALLDMYGKRGSIFESQRVFNETQEK----SEFAWTAIISALARH-GDYESVMNQFKEMENKGV 454 (648)
Q Consensus 391 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 454 (648)
...+|...+....+.|.++.|..+|....+. ....|-..+..-.+. ++.+.|..+|+...+. +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 2335666677777777777777777765432 222333222222233 3477888888877764 3
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHH
Q 006364 455 RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEP--SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQS 531 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 531 (648)
+-+...+...+.-....|+.+.|..+|+..... ...| ....|...++.-.+.|+.+.+.++.+++. ..|+......
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 334444556666556677888888888877644 1111 25667777777777788888888777765 2233333333
Q ss_pred HHHHH
Q 006364 532 LLGAC 536 (648)
Q Consensus 532 l~~~~ 536 (648)
+..-|
T Consensus 580 f~~ry 584 (679)
T 4e6h_A 580 FTNKY 584 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44333
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1.8e-09 Score=108.00 Aligned_cols=303 Identities=7% Similarity=0.002 Sum_probs=215.9
Q ss_pred CCCChhhHHHHHHHH--hcCCchHHHHHHHHHHHHh--cCCCCchh--HHHHHHHH--HhcCChHHHH---------HHH
Q 006364 251 VCPNDVTFIGLIHAI--SIGNLVKEGRMIHGLCIKT--NFLSEPSV--CNCLITMY--ARFESMQDSE---------KVF 313 (648)
Q Consensus 251 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~~~li~~~--~~~g~~~~a~---------~~~ 313 (648)
+.|+...-+.+-..| ...++++.|..+.+++.+. .+..|..+ |-.|+..- .-.+....+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 455555555666666 7899999999999998764 23334333 33333321 1112222222 444
Q ss_pred hhcCC---C-C-c---ccHHHHHHHHHhcCCcHHHHHHHHHhHh--CCCCC----HHHHHHHHHHhccCchhhHHHHHHH
Q 006364 314 DELSC---R-E-I---ISWNALISGYAQNGLSLAAVQAFFGVIK--ESKPN----AYTFGSVLNAVGAAEDISLKHGQRC 379 (648)
Q Consensus 314 ~~~~~---~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~a~~~~~~~~~~~a~~~ 379 (648)
+.+.. + + . ..|......+...|++++|+..|++... ...++ ..++..+...+...| +.+.|...
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~ 163 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYH 163 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHH
Confidence 44432 1 1 1 1223344556789999999999999887 22343 346777888888999 99999999
Q ss_pred HHHHHHhCC-----C-CchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHH
Q 006364 380 HSHIIKVGL-----D-SDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVMN 444 (648)
Q Consensus 380 ~~~~~~~~~-----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 444 (648)
+....+... . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+.
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 988775321 1 1245778899999999999999999987653 22 3478889999999999999999
Q ss_pred HHHHHHHC----CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC-hHHHHHHHHHHhhcCC---HHHHH
Q 006364 445 QFKEMENK----GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS-PDHYSCMVDMLGRVGR---LEEAE 514 (648)
Q Consensus 445 ~~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~ 514 (648)
.|++..+. +.+....++..+...+.+.|++++|...+++..+...- .|. ...+..+...+...|+ +++|.
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99998871 22223677888899999999999999999998765332 233 5567778888888888 99999
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 515 ELVGQIPGGPG-LSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 515 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
..+++....|+ ...+..+...+...|+++.|...++++.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99998664433 345677888999999999999999998764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=9.4e-10 Score=117.88 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=143.3
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLT 466 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 466 (648)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466788899999999999999999997653 3678999999999999999999999999988 4565 678999999
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVE 543 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 543 (648)
++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++.. .+.+...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999754 787 8899999999999999999999999865 3456788999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 006364 544 MGERIADALMKMEP 557 (648)
Q Consensus 544 ~a~~~~~~~~~~~p 557 (648)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987654
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.8e-10 Score=97.96 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=98.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 510 (648)
+...|++++|+..+++... ..|+ ...+..+...|...|++++|++.|++..+. .|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3445566666666666543 2233 234455666677777777777777777644 565 77777777777788888
Q ss_pred HHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 511 EEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERI-ADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 511 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
++|...+++.. .+.++.+|..+...+...|+.++|.+. ++++++++|.++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88877777654 334567788888888888888765554 689999999999999999999888875
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=4.8e-09 Score=98.80 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S---EFAWTAIISALARHGDYESVMNQFKEMENKGV-RPD-SITFL 462 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 462 (648)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666667777777777777776653 2 2 44566677777777777777777777766321 112 23455
Q ss_pred HHHHHhcc--------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 006364 463 SVLTVCGR--------NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLL 533 (648)
Q Consensus 463 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 533 (648)
.+..++.. .|++++|+..|+...+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555655 77777777777777655 343 22222221111111111 11246678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCcHHHHHHHHHHhh
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEK----------GDWEMVAILRKGMKS 588 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~ 588 (648)
..+...|+++.|...++++++..|++ +..+..++.+|... |++++|...++++.+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 88999999999999999999999985 45899999999977 899999999988765
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.8e-09 Score=102.84 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHhCCChHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE----------K-SEFAWTAIISALARHGDYES 441 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~ 441 (648)
.+++..++........+....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 344444443333223334566788899999999999999998886542 1 34578888899999999999
Q ss_pred HHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHhhcC
Q 006364 442 VMNQFKEMENK------GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDY-----HIEPS-PDHYSCMVDMLGRVG 508 (648)
Q Consensus 442 A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~l~~~~~~~g 508 (648)
|+..|++.... .-.|+ ..++..+...+...|++++|..+++++.+.. +-.|. ...+..+..+|.+.|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999988763 11232 4677788888889999999999998886531 11343 667888889999999
Q ss_pred CHHHHHHHHhhCC----------CCC-CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 509 RLEEAEELVGQIP----------GGP-GLSVLQSLLGACRIHGNV------EMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 509 ~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
++++|...+++.. ..+ ....|..+.......+.. ..+...++......|..+..+..++.+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999998887654 112 222333333333333322 22222222222233555678999999999
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+++++..+
T Consensus 264 ~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.4e-09 Score=104.39 Aligned_cols=198 Identities=7% Similarity=0.002 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE-----KS----EFAWTAIISALARHGDYESVM 443 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~ 443 (648)
+++|...+... ...|...|++++|.+.|.+..+ .+ ..+|+.+...|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 3456777888888887775532 11 457888889999999999999
Q ss_pred HHHHHHHHCCCC-CC----HHHHHHHHHHhccc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 006364 444 NQFKEMENKGVR-PD----SITFLSVLTVCGRN-GMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 444 ~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 513 (648)
..|++..+.... .+ ..++..+...|... |++++|+..|++..+.+.-..+ ..++..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999887752111 11 35778888888886 9999999999988754211111 45688889999999999999
Q ss_pred HHHHhhCC-CC---CCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCcH
Q 006364 514 EELVGQIP-GG---PGL-----SVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS-----YVLMSNLYA--EKGDWE 577 (648)
Q Consensus 514 ~~~~~~~~-~~---~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~ 577 (648)
...+++.. .. +.. ..|..++.++...|+++.|...+++++++.|..+.. +..++..|. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998754 12 221 256777888899999999999999999999876543 445566664 456788
Q ss_pred HHHHHHHH
Q 006364 578 MVAILRKG 585 (648)
Q Consensus 578 ~a~~~~~~ 585 (648)
+|.+.+++
T Consensus 258 ~A~~~~~~ 265 (292)
T 1qqe_A 258 EHCKEFDN 265 (292)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 88877743
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=1.3e-08 Score=93.21 Aligned_cols=180 Identities=10% Similarity=0.006 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHH
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE--KS----EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDS----ITF 461 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 461 (648)
+..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566777888888888888887653 32 246777778888888888888888888774 3332 133
Q ss_pred HHHHHHhcc------------------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC
Q 006364 462 LSVLTVCGR------------------NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG 522 (648)
Q Consensus 462 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 522 (648)
..+..++.. .|++++|+..|+.+.+. .|+ ...+...... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH--------
Confidence 333444432 46777777777777644 444 2222211110 0000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456778899999999999999999999886 5799999999999999999999998887654
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=7.5e-09 Score=85.81 Aligned_cols=123 Identities=13% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH 539 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 539 (648)
.+...+...|++++|..+++.+.+. .| +...+..++..+...|++++|...++++. .+.+...|..+...+...
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3334444444445555444444332 22 24444445555555555555555554432 223455566666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 540 GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|+++.|...++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777777777777888888888888888887776654
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=3.3e-08 Score=98.52 Aligned_cols=262 Identities=11% Similarity=0.017 Sum_probs=151.2
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhcCChHHHHHHHhhcCC-----CCc----ccHHHHHHH
Q 006364 264 AISIGNLVKEGRMIHGLCIKTNFLSEPS----VCNCLITMYARFESMQDSEKVFDELSC-----REI----ISWNALISG 330 (648)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~ 330 (648)
.+...|+++.|...+.......-..+.. +++.+...|...|++++|...+++... .+. .+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445677777777766665543111111 234444555556666666665554321 111 123334444
Q ss_pred HHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC--C-chhHHHHHHHHHhhcCC
Q 006364 331 YAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD--S-DPIVGSALLDMYGKRGS 407 (648)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 407 (648)
+...|++++|...+++... ...+.+.. | ....+..+...|...|+
T Consensus 103 ~~~~G~~~~A~~~~~~al~--------------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQ--------------------------------LINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHH--------------------------------HHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 5555555555555544432 00011111 1 22344556667777788
Q ss_pred HHHHHHHHhhcCC--C------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHhcccCc
Q 006364 408 IFESQRVFNETQE--K------SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFL-----SVLTVCGRNGM 473 (648)
Q Consensus 408 ~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~ 473 (648)
+++|...+++... + ...+|..+...+...|++++|...+++.....-.++ ...+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 8888777765431 1 124567777888888888888888888765311211 11121 22234668899
Q ss_pred HHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC----C---CCCH-HHHHHHHHHHHHcCCHH
Q 006364 474 IHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP----G---GPGL-SVLQSLLGACRIHGNVE 543 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~---~~~~-~~~~~l~~~~~~~g~~~ 543 (648)
+++|...++.......-.+. ...+..+...+...|++++|...+++.. . .++. .++..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 99999988887543111111 2346677888888999999988887653 1 1122 25566677888899999
Q ss_pred HHHHHHHHHHhcCC
Q 006364 544 MGERIADALMKMEP 557 (648)
Q Consensus 544 ~a~~~~~~~~~~~p 557 (648)
.|...++++.++.+
T Consensus 311 ~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 311 DAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887654
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.9e-09 Score=114.73 Aligned_cols=167 Identities=10% Similarity=0.006 Sum_probs=106.6
Q ss_pred hhcCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcc
Q 006364 403 GKRGSIFESQRVFNETQ-----------EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGR 470 (648)
Q Consensus 403 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 470 (648)
...|++++|.+.++... ..+...|..+...|.+.|++++|+..|++..+. .| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666777776666554 224556666666777777777777777776663 33 34566666666667
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++ .+.+++.. .+.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777766543 554 6666667777777777776 66666543 33455666667777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 548 IADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
.++++++++|.++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777655443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1.7e-08 Score=94.90 Aligned_cols=204 Identities=8% Similarity=-0.000 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C----Ch
Q 006364 352 KPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS--DPIVGSALLDMYGKRGSIFESQRVFNETQE--K----SE 423 (648)
Q Consensus 352 ~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~ 423 (648)
+.+...+......+...| ++++|...+..+.+..... ....+..+..+|.+.|++++|...|+...+ | ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQG--KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTT--CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 445677777788888899 9999999999999865322 156788899999999999999999998764 3 13
Q ss_pred hHHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCCh
Q 006364 424 FAWTAIISALAR--------HGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSP 494 (648)
Q Consensus 424 ~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 494 (648)
.++..+..++.. .|++++|+..|++..+. .|+. .....+ ..+...... -.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~ 148 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HH
Confidence 467778888888 99999999999999884 3443 222111 111111100 01
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCC
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP-GGP----GLSVLQSLLGACRIH----------GNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 559 (648)
..+..+...|.+.|++++|...++++. ..| ....+..+..++... |++++|...++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 235567778888888888888887654 122 245677777777765 88999999999999999998
Q ss_pred ch---hHHHHHHHHHhcCCcHH
Q 006364 560 SG---SYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 560 ~~---~~~~l~~~~~~~g~~~~ 578 (648)
+. .+..+..++...|++++
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhhh
Confidence 64 45566666666555543
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=2.4e-09 Score=90.93 Aligned_cols=121 Identities=5% Similarity=-0.063 Sum_probs=102.7
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG 540 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 540 (648)
|...+...|++++|+..+.... ...|+ ...+..+..+|.+.|++++|.+.+++.. .+.++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455678899999999999875 44665 6667788999999999999999999875 4567889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH-HHHHh
Q 006364 541 NVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL-RKGMK 587 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 587 (648)
+++.|...++++++++|.++.+|..++.+|.+.|++++|.+. +++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 46554
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=2.2e-08 Score=82.88 Aligned_cols=130 Identities=13% Similarity=0.235 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .|+ ...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 46677778888888888888888887642 335667777777788888888888888888654 343 6777888888
Q ss_pred HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 504 LGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++.+..|.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888887764 3345777888888888999999999999998888775
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.8e-08 Score=96.13 Aligned_cols=173 Identities=7% Similarity=-0.034 Sum_probs=137.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 409 FESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 409 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
+...+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444455444445566777888888999999999999998874 45 4567888888999999999999999988644
Q ss_pred cCCCCChHH-HHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chh
Q 006364 488 YHIEPSPDH-YSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG--SGS 562 (648)
Q Consensus 488 ~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 562 (648)
.|+... .......+.+.++.++|...+++.. .+.+...+..+...+...|++++|...++++++.+|++ +..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 666333 3333344677788888888887765 45678889999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 563 YVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+..++.+|...|+.++|...+++-
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999998877654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=7.3e-08 Score=90.32 Aligned_cols=241 Identities=9% Similarity=0.003 Sum_probs=149.9
Q ss_pred HHhcCChHHHHHHHhhcCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHH
Q 006364 300 YARFESMQDSEKVFDELSCREII-SWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQR 378 (648)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~ 378 (648)
..-.|.+..++.-...+...+.. .-.-+.++|...|++.... ...|....+..+..-+ . + + +..
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~-~-~--~---a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL-D-T--K---NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH-T-T--T---CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh-c-c--c---HHH
Confidence 34456776666655554432222 1222335666666554210 1223332332222222 1 1 1 344
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006364 379 CHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-----SEFAWTAIISALARHGDYESVMNQFKEMENKG 453 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 453 (648)
.++.....+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 455444443 344555567788888889999999988876432 455777788888999999999999999877
Q ss_pred CCC-----CHHHHHHHHHHh--cc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC--
Q 006364 454 VRP-----DSITFLSVLTVC--GR--NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPG-- 522 (648)
Q Consensus 454 ~~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 522 (648)
..| +..+...+..++ .. .+++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 466 355555666553 22 33888899999988654 45533333444478888999999888875432
Q ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 523 ----------GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 523 ----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
+.++.++..++......|+ .|.++++++.+..|++|.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 3356666666666666776 78888889988888887543
No 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=5.8e-09 Score=88.28 Aligned_cols=100 Identities=8% Similarity=-0.036 Sum_probs=89.0
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 55675 7778888899999999999999998765 45578889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.+.+++..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.93 E-value=7.8e-09 Score=87.29 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=91.4
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.++..|..+..++...|++++|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 66776 7788888999999999999999998876 45678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987753
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=4.9e-09 Score=99.77 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=158.1
Q ss_pred HhcCCcHHHHHHHHHhHh--------CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHh------CC-CCchhHHH
Q 006364 332 AQNGLSLAAVQAFFGVIK--------ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKV------GL-DSDPIVGS 396 (648)
Q Consensus 332 ~~~g~~~~A~~~~~~m~~--------~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~ 396 (648)
...|++++|+..|++... ..+....++..+...+...| +++.|...+..+.+. +- +....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346777777777777655 11234567788888899999 999999999998865 22 23456788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-H
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQE-------K----SEFAWTAIISALARHGDYESVMNQFKEMENK------GVRPD-S 458 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~ 458 (648)
.+...|...|++++|.+.|.+..+ + ...+|..+...|...|++++|+..|++..+. +-.|+ .
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999987642 1 3557888999999999999999999998874 11333 4
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhc------CCCCC-hHHHHHHHHHHhhcC------CHHHHHHHHhhCCCC-C
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDY------HIEPS-PDHYSCMVDMLGRVG------RLEEAEELVGQIPGG-P 524 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-~ 524 (648)
.++..+...+...|++++|..+++++.+.. ...|. ...|..+...+...+ .+.++...++..... |
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678888899999999999999999987531 12333 344444444444333 344555555555422 2
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006364 525 -GLSVLQSLLGACRIHGNVEMGERIADALMKM 555 (648)
Q Consensus 525 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 555 (648)
...++..+...+...|++++|...++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888899999999999999999998865
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.3e-07 Score=85.63 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=130.5
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHHhH
Q 006364 411 SQRVFNETQ-EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG----MIHKGRHLFDSML 485 (648)
Q Consensus 411 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 485 (648)
|.+.|.... ..++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 2466677777777878888888888888887765 45666666666776 6 8889999888885
Q ss_pred HhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 006364 486 KDYHIEPSPDHYSCMVDMLGR----VGRLEEAEELVGQIPGGPG----LSVLQSLLGACRI----HGNVEMGERIADALM 553 (648)
Q Consensus 486 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 553 (648)
+. -+...+..|...|.. .+++++|..++++.....+ +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 43 246677778888877 7889999999888664433 7788888888888 788999999999998
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----CcHHHHHHHHHHhhCCC
Q 006364 554 KMEPAGSGSYVLMSNLYAEK-G-----DWEMVAILRKGMKSKGV 591 (648)
Q Consensus 554 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 591 (648)
+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 67778899999998764 3 89999999988776653
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.6e-07 Score=88.09 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=136.0
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 411 SQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 411 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
|...|++..+ ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6677776553 456666788899999999999999999987765423 456777888999999999999999999975
Q ss_pred hcCCCC-----ChHHHHHHHHH--HhhcC--CHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 006364 487 DYHIEP-----SPDHYSCMVDM--LGRVG--RLEEAEELVGQIPGG-PGLSVLQSLLGACRIHGNVEMGERIADALMKM- 555 (648)
Q Consensus 487 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 555 (648)
. .| +..+...|+.+ ....| ++++|..+|+++... |+...-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 67 34555555555 33334 999999999998644 55333344555888999999999999988876
Q ss_pred ---------CCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 556 ---------EPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 556 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+|+++.++..++.+....|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48899999888888888897 889999988863
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=2.4e-08 Score=105.75 Aligned_cols=158 Identities=12% Similarity=0.037 Sum_probs=126.1
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHH
Q 006364 405 RGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 405 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998764 35778999999999999999999999999884 44 467888899999999999999999
Q ss_pred HHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 006364 481 FDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH---GNVEMGERIADALMK 554 (648)
Q Consensus 481 ~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 554 (648)
|++..+. .|+ ...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999865 676 8899999999999999999999998865 345678899999999999 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 006364 555 MEPAGSGSYVLMS 567 (648)
Q Consensus 555 ~~p~~~~~~~~l~ 567 (648)
.+|.+...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999988877
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=1.9e-08 Score=82.34 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=53.5
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 490 IEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 490 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
+.|+ ...+......|.+.|++++|++.|++.. .+.+..+|..+..++...|+++.|...++++++++|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 4445555555555555555555555433 233445555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCcHHHHHHHHHHh
Q 006364 567 SNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~m~ 587 (648)
+.+|...|++++|.+.+++..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555443
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=4e-08 Score=94.06 Aligned_cols=171 Identities=8% Similarity=0.006 Sum_probs=137.9
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHHHHHHHH
Q 006364 407 SIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 407 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
++++|...|+.. ...|...|++++|+..|++..+. |-.++ ..+|+.+..+|...|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 588888887664 56788999999999999988763 32222 468889999999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHhhc-CCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 006364 482 DSMLKDYHIEPS----PDHYSCMVDMLGRV-GRLEEAEELVGQIP-G---GPG----LSVLQSLLGACRIHGNVEMGERI 548 (648)
Q Consensus 482 ~~m~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~a~~~ 548 (648)
++..+-+.-..+ ..++..+..+|... |++++|+..+++.. . ..+ ..++..+...+...|++++|...
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988754211111 46788999999996 99999999998764 1 111 35688899999999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 549 ADALMKMEPAGSG-------SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 549 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++++.++.|.+.. .|..++.+|...|++++|...+++..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999987654 578899999999999999999986553
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=2.5e-08 Score=87.34 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=88.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-Hhh
Q 006364 429 IISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM-LGR 506 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~ 506 (648)
+...+...|++++|+..|++..+. .| +...+..+...+...|++++|+..|+...+. .|+...+..+... +..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 334444455555555555544331 22 2344444445555555555555555554332 2222211111111 111
Q ss_pred cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCcHHHHHH
Q 006364 507 VGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG--SGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 507 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
.+...+|...+++.. .+.+...+..+...+...|++++|...++++++.+|.. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 122223455554433 23357778888888888888888999998888888764 55888899999999999888888
Q ss_pred HHHHh
Q 006364 583 RKGMK 587 (648)
Q Consensus 583 ~~~m~ 587 (648)
+++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=5.1e-08 Score=79.70 Aligned_cols=114 Identities=10% Similarity=0.057 Sum_probs=94.9
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 VRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
+.|+. ..+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|+..+++.. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44553 45667777888888888888888888754 665 7888888889999999999998888765 45567889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
..+..++...|++++|...++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999988887764
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1.9e-08 Score=108.44 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=132.0
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHH
Q 006364 434 ARHGDYESVMNQFKEME--------NKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDML 504 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 504 (648)
...|++++|++.|++.. +. -+.+...+..+..++...|++++|+..|+++.+. .|+ ...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHH
Confidence 77899999999999998 32 2334577888888999999999999999999865 676 88999999999
Q ss_pred hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 505 GRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 505 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
.+.|++++|.+.|++.. .+.+...|..+..++...|++++ +..++++++++|.++..|..++.+|...|++++|.+.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999865 34467789999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHh
Q 006364 583 RKGMK 587 (648)
Q Consensus 583 ~~~m~ 587 (648)
+++..
T Consensus 557 ~~~al 561 (681)
T 2pzi_A 557 LDEVP 561 (681)
T ss_dssp HHTSC
T ss_pred HHhhc
Confidence 97554
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=7.7e-08 Score=101.81 Aligned_cols=144 Identities=8% Similarity=-0.051 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKE 448 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (648)
+.++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 4 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555554432 22344555555555566666666666554432 2344555555556666666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc---CCHHHHHHHHhhC
Q 006364 449 MENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV---GRLEEAEELVGQI 520 (648)
Q Consensus 449 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 520 (648)
..+.. +.+...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++... |++++|.+.+++.
T Consensus 83 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 55531 122445555555555566666666666555433 343 45555555555555 5566665555543
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=1.4e-07 Score=91.04 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=148.5
Q ss_pred cCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhcc-CchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHH
Q 006364 334 NGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGA-AEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQ 412 (648)
Q Consensus 334 ~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 412 (648)
.|++++|.+++++..+..+.. +.. .+ +++.+...+... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~--~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKP--DYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSC--CHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCC--CHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 345666666666655411111 111 23 566666555443 45667778888888
Q ss_pred HHHhhcCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcccCcHHHHH
Q 006364 413 RVFNETQE-----KS----EFAWTAIISALARHGDYESVMNQFKEMENKGV---RPD--SITFLSVLTVCGRNGMIHKGR 478 (648)
Q Consensus 413 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~ 478 (648)
..|....+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 87775542 11 34788888999999999999999998765211 122 3567788888888 9999999
Q ss_pred HHHHHhHHhcCCC---CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CCC----HHHHHHHHHHHHHcCCHHHHH
Q 006364 479 HLFDSMLKDYHIE---PS-PDHYSCMVDMLGRVGRLEEAEELVGQIPG----GPG----LSVLQSLLGACRIHGNVEMGE 546 (648)
Q Consensus 479 ~~~~~m~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~ 546 (648)
..|++..+.+.-. +. ..++..+...|.+.|++++|...+++... .++ ...+..++..+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999886542111 11 56788899999999999999999987641 121 235666677778889999999
Q ss_pred HHHHHHHhcCCCCchh-----HHHHHHHHHhcCCcHHHHHH
Q 006364 547 RIADALMKMEPAGSGS-----YVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 547 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 582 (648)
..+++++ +.|..... ...++..+ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 88875433 44555555 56776666553
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=1.1e-07 Score=85.65 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=113.9
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCC---ChhHHHH----------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-CH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEK---SEFAWTA----------------IISALARHGDYESVMNQFKEMENKGVRP-DS 458 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 458 (648)
...+...|++++|...|+...+. +...|.. +..+|.+.|++++|+..|++..+. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 33455667777777777665432 2334444 888899999999999999999884 45 46
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC--HHHHHHHHhhCCCC-CCHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR--LEEAEELVGQIPGG-PGLSVLQSLLG 534 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~-~~~~~~~~l~~ 534 (648)
..+..+..++...|++++|+..|++..+. .|+ ...|..+...|...|. .+.+...++..... |....+..+..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 78888888999999999999999999755 776 8888888888876654 44556666665532 22234555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
++...|++++|...+++++++.|++
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7777899999999999999999864
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=3.8e-07 Score=87.28 Aligned_cols=159 Identities=11% Similarity=0.005 Sum_probs=118.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 006364 429 IISALARHGDYESVMNQFKEMENKG-VRPDSI----TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSC 499 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 499 (648)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788888999999888887632 222221 2334666677788999999999988763222223 346888
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC-------CC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP-------GG-P-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYV 564 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 564 (648)
+...|...|++++|...++++. .. + ...++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999988887654 11 1 23477888999999999999999999999875432 56899
Q ss_pred HHHHHHHhcCC-cHHHHHHHHHHh
Q 006364 565 LMSNLYAEKGD-WEMVAILRKGMK 587 (648)
Q Consensus 565 ~l~~~~~~~g~-~~~a~~~~~~m~ 587 (648)
.++.+|...|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699998887664
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=2.2e-07 Score=84.07 Aligned_cols=122 Identities=9% Similarity=-0.017 Sum_probs=81.7
Q ss_pred HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC
Q 006364 463 SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG 540 (648)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 540 (648)
.+...+...|++++|+..|++. +.|+...+..+...|.+.|++++|...+++.. .+.+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3344455566666666666544 24455566666666666666666666665543 2345566777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 541 NVEMGERIADALMKMEPAGS----------------GSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
+++.|...++++++..|.+. ..+..++.+|...|++++|.+.+++..+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777777777666 77888888888888888888888776654
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=1.1e-05 Score=82.71 Aligned_cols=203 Identities=11% Similarity=0.025 Sum_probs=134.4
Q ss_pred HHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHH-HHHHh
Q 006364 338 LAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFES-QRVFN 416 (648)
Q Consensus 338 ~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~ 416 (648)
+.+..+|+++....+-+...|...+.-+...| +.+.|..++...+.. +.+...+.. |+...+.++. ..+.+
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~--~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG--QKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHH
Confidence 34667888877755556777777777777777 889999999998887 444433332 2221111111 11111
Q ss_pred hcC------------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCcHHHHHHHHHH
Q 006364 417 ETQ------------EKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVC-GRNGMIHKGRHLFDS 483 (648)
Q Consensus 417 ~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~ 483 (648)
... ......|-..+....+.++.+.|..+|++. .. ..++...|......- ...++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110 002245777777777788899999999998 32 123344443221111 123368999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 484 MLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 484 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..+.++-. ...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 346 al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98874322 4556667888888999999999999985 3578899999888889999999988888774
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=3.5e-07 Score=83.59 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--CC-hh---H
Q 006364 354 NAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDS--DPIVGSALLDMYGKRGSIFESQRVFNETQE--KS-EF---A 425 (648)
Q Consensus 354 ~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 425 (648)
+...+..+...+...| +.++|...+..+.+..... ....+..+..+|.+.|++++|...|+...+ |+ .. +
T Consensus 3 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3445556667778888 9999999999999865432 245778889999999999999999998764 32 22 4
Q ss_pred HHHHHHHHHh------------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 426 WTAIISALAR------------------HGDYESVMNQFKEMENKGVRPDSI-TFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 426 ~~~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+..+..++.. .|+.++|+..|+++.+. .|+.. .+..... ...+....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH--
Confidence 5555555554 57899999999999984 45542 2221110 00111111
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 487 DYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 487 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
......+...|.+.|++++|...++++. ..|+ ...+..+..++...|+.+.|...++.+....|.+..
T Consensus 147 -------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1122356788899999999999988765 2233 256888899999999999999999999998888754
Q ss_pred h
Q 006364 562 S 562 (648)
Q Consensus 562 ~ 562 (648)
.
T Consensus 220 ~ 220 (225)
T 2yhc_A 220 H 220 (225)
T ss_dssp C
T ss_pred h
Confidence 3
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.71 E-value=2.1e-07 Score=83.87 Aligned_cols=157 Identities=12% Similarity=0.038 Sum_probs=120.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHhcccCcHHHHHHHHHHhHHhc
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLS----------------VLTVCGRNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~ 488 (648)
+-.....+...|++++|+..|++..+ ..|+ ...|.. +..++...|++++|+..|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 33455677889999999999999987 3555 345556 788889999999999999999865
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCchhH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN--VEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
.|+ ...+..+..+|...|++++|...+++.. .+.+..+|..+...+...|+ .+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 776 8899999999999999999999999875 45567889888888766654 34455566665433222 2356
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 564 VLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..++.++...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6778888889999999999987764
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=7.1e-07 Score=85.36 Aligned_cols=163 Identities=11% Similarity=-0.017 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhcccCcHHHHHHHHHHhHHhcC--CCCC--hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPD-S----ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYH--IEPS--PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 495 (648)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|+..++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888999999999888777432211 1 2233455566788899999999988764311 1222 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------Cc
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP----GGPG-----LSVLQSLLGACRIHGNVEMGERIADALMKMEPA------GS 560 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 560 (648)
+|+.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|...+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999887654 1122 257888999999999999999999999876532 15
Q ss_pred hhHHHHHHHHHhcCCcHHH-HHHHHHHh
Q 006364 561 GSYVLMSNLYAEKGDWEMV-AILRKGMK 587 (648)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 587 (648)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77676543
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.69 E-value=2.5e-07 Score=88.10 Aligned_cols=132 Identities=10% Similarity=-0.024 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH
Q 006364 455 RPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSL 532 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 532 (648)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334566777888889999999999999999865 786 8889999999999999999999999987 34665544433
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 533 L-GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 533 ~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
. ..+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 34677888899999999999999999999999999999999999999999988763
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=1.9e-07 Score=89.99 Aligned_cols=194 Identities=6% Similarity=-0.038 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMEN 451 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (648)
++++|..++....+.... . .+...+++++|...|.. ....|...|++++|+..|.+..+
T Consensus 6 ~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 778888888877764221 1 12225788888888765 46778899999999999998876
Q ss_pred C----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 452 K----GVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 452 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
. |-.+. ..+|..+...|...|++++|+..|++..+.+.- .|. ..++..+..+|.+ |++++|+..+++..
T Consensus 65 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 3 11111 357888888999999999999999987654211 122 5678889999998 99999999998764
Q ss_pred ---C--CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 522 ---G--GP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS------GSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 522 ---~--~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
. .+ ...++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 11 145788899999999999999999999999876543 367788889999999999999998765
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=3e-07 Score=79.27 Aligned_cols=125 Identities=8% Similarity=-0.021 Sum_probs=92.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC 536 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 536 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+...|++++|...+++.. .+.+...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555666667777777777766543 443 6667777777777777777777776644 344567788888889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCcHHHHHHHHHHh
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNL--YAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 587 (648)
...|+++.|...++++++..|.++..+..+..+ +...|++++|.+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999998888554444 888899999999887664
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=3.4e-07 Score=74.39 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+..+...+...|++++|.++++.+.+. .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45556666666677777777777776544 343 5666777777777777777777776654 33466778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKG 574 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 574 (648)
+...|+++.|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999988888887654
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.5e-07 Score=78.86 Aligned_cols=100 Identities=8% Similarity=-0.045 Sum_probs=85.8
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 489 HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 489 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|+++.|...++++++++|.++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 45665 6667777888889999999999988765 44577888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++.+|...|++++|.+.+++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=2.7e-07 Score=75.73 Aligned_cols=116 Identities=5% Similarity=-0.054 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLG 534 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 534 (648)
...+..+...+...|++++|...|+...+. .|+ ...+..+...+...|++++|...+++.. .+.+...|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345556666667777777777777777644 343 6677777777777788888877776654 3345677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCc
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDW 576 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 576 (648)
.+...|+++.|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999988875
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=2.5e-07 Score=76.29 Aligned_cols=114 Identities=7% Similarity=0.004 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+..+...+...|++++|...|+...+ ..|+ ...+..+..++...|++++|...+++.. .+.+...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4445555555555556666655555542 2342 5555566666666666666666665543 23456677778888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
+...|+++.|...++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888889999999999999999988899999888887664
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=5.1e-07 Score=81.69 Aligned_cols=144 Identities=8% Similarity=-0.044 Sum_probs=79.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 475 (648)
..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555555666666666655555555555555555555555555555555555431 223344555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 476 KGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGP-GLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
+|++.|+...+...-.+... +...|. ...| ...+|..+..++...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555543211111000 000000 0111 236778888888899999999999999999
Q ss_pred cCCCC
Q 006364 555 MEPAG 559 (648)
Q Consensus 555 ~~p~~ 559 (648)
+.|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88876
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.1e-06 Score=79.26 Aligned_cols=174 Identities=10% Similarity=-0.047 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCC----ChHHHHHHHHHH
Q 006364 375 HGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEK-SEFAWTAIISALARHG----DYESVMNQFKEM 449 (648)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m 449 (648)
+|...+....+.| ++..+..|...|...+++++|.++|+...+. +..++..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455566666553 6777888888999999999999999977654 67788888888887 6 899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHh
Q 006364 450 ENKGVRPDSITFLSVLTVCGR----NGMIHKGRHLFDSMLKDYHIEPS---PDHYSCMVDMLGR----VGRLEEAEELVG 518 (648)
Q Consensus 450 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 518 (648)
.+.| +...+..+...|.. .+++++|+.+|++..+. .|+ ...+..|...|.. .+++++|...++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 55677777777776 88999999999998643 553 7888889999988 889999999999
Q ss_pred hCCCC-CCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCC
Q 006364 519 QIPGG-PGLSVLQSLLGACRIH-G-----NVEMGERIADALMKMEPA 558 (648)
Q Consensus 519 ~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 558 (648)
+.... +++..+..|...+... | |.++|...++++.+.+..
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 87533 5666777888877653 3 899999999999887644
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.65 E-value=3.9e-06 Score=80.17 Aligned_cols=201 Identities=15% Similarity=0.019 Sum_probs=141.0
Q ss_pred HHHhHh-CCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhH---HHHHHHHHhhcCCHHHHHHHHhhcC
Q 006364 344 FFGVIK-ESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIV---GSALLDMYGKRGSIFESQRVFNETQ 419 (648)
Q Consensus 344 ~~~m~~-~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~ 419 (648)
+.++.. ...|+..++..+...+.-.- + .+.......+... +...+..+...|++++|.+.++...
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~----~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI----I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT----H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH----H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344444 44677777777776665432 1 1111111222222 2334677889999999999999865
Q ss_pred CC-----C----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 420 EK-----S----EFAWTAIISALARHGDYESVMNQFKEMENKGVR-PD----SITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 420 ~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
+. + ...+..+...+...|++++|+..|++....... ++ ..+++.+..+|...|++++|..+|+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 1 113344667777788999999999999884322 33 2368889999999999999999999987
Q ss_pred Hhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 006364 486 KDY----HIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGPG-LSVLQSLLGACRIHGN-VEMGERIADA 551 (648)
Q Consensus 486 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~g~-~~~a~~~~~~ 551 (648)
+.. +..|. ..+|..+...|.+.|++++|...+++.. ..+. ..+|..+..++...|+ +++|...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 421 22233 5588899999999999999999987654 1122 6688899999999995 6999999999
Q ss_pred HHhc
Q 006364 552 LMKM 555 (648)
Q Consensus 552 ~~~~ 555 (648)
++++
T Consensus 263 Al~i 266 (293)
T 3u3w_A 263 ASFF 266 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=5.2e-06 Score=78.67 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH--HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC----
Q 006364 437 GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH--KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR---- 509 (648)
Q Consensus 437 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---- 509 (648)
+++++++.+++++.+.. +-|...|..-...+.+.|.++ +++++++.+.+. .|. ...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 45555555555555531 223444444444444444444 555555555533 332 4444444444444443
Q ss_pred --HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCcHHHHH
Q 006364 510 --LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNV-EMGERIADALMKME---PAGSGSYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 510 --~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 581 (648)
++++++.++++. .+-|...|+-+...+...|+. +......+++.+++ |.++..+..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 555555555433 334555555555555555542 22334444444443 5555555566666666666666666
Q ss_pred HHHHHh
Q 006364 582 LRKGMK 587 (648)
Q Consensus 582 ~~~~m~ 587 (648)
+++.+.
T Consensus 280 ~~~~l~ 285 (306)
T 3dra_A 280 VYDLLK 285 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=1.6e-07 Score=82.27 Aligned_cols=117 Identities=6% Similarity=0.064 Sum_probs=73.0
Q ss_pred cccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH-HHHcCCH--
Q 006364 469 GRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA-CRIHGNV-- 542 (648)
Q Consensus 469 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~-- 542 (648)
...|++++|...++...+. .|+ ...|..+...|...|++++|...+++.. .+.+...|..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4456666666666665543 343 5666666666666666666666666543 23345566666666 5566776
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.|...++++++.+|.++..+..++.+|...|++++|...+++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777766554
No 129
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=3.5e-07 Score=79.93 Aligned_cols=155 Identities=13% Similarity=0.036 Sum_probs=119.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcc
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTV-CGR 470 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 470 (648)
...+...+.+.|++++|...|+...+ .+...|..+...+...|++++|+..|++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566778889999999999998875 36778999999999999999999999988763 3444332222111 112
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG---LSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~a 545 (648)
.+...+|+..++...+. .|+ ...+..+..++...|++++|...++++. ..|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233478888888754 776 8889999999999999999999998764 3343 56889999999999999999
Q ss_pred HHHHHHHHh
Q 006364 546 ERIADALMK 554 (648)
Q Consensus 546 ~~~~~~~~~ 554 (648)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=3.1e-07 Score=89.61 Aligned_cols=142 Identities=9% Similarity=0.014 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 006364 422 SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCM 500 (648)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 500 (648)
+...|..+...|.+.|++++|+..|++..+. .|+...+ .. +.+.++ .|. ...|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~~--~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------Ch--HHHHHH----------HHHHHHHHHHH
Confidence 3445666666666677777777777666653 2222100 00 011000 111 4677778
Q ss_pred HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 501 VDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
..+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...++++++++|.++.++..++.++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 345678889999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 006364 579 V-AILRKGM 586 (648)
Q Consensus 579 a-~~~~~~m 586 (648)
+ ...++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 8 4455555
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=2.7e-07 Score=77.76 Aligned_cols=104 Identities=9% Similarity=-0.026 Sum_probs=76.5
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 VRPDS-ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
+.|+. ..+..+...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|...|++.. .+.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34442 45566666777778888888888877644 665 7777778888888888888888877654 34456678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
..+..++...|++++|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888887653
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=4.4e-07 Score=74.17 Aligned_cols=95 Identities=4% Similarity=-0.087 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...+++.. .+.+...|..+..++...|++++|...++++++++|.++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4456667777777888888888777654 34467778888888888888888888888888888888888888888888
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 88888888888877654
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=4.1e-07 Score=72.24 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA--GSGSYVLMSNL 569 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 569 (648)
...+..+...+.+.|++++|...+++.. .+.+...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566777778888888888888887654 3456778888888999999999999999999999999 99999999999
Q ss_pred HHhc-CCcHHHHHHHHHHhhCC
Q 006364 570 YAEK-GDWEMVAILRKGMKSKG 590 (648)
Q Consensus 570 ~~~~-g~~~~a~~~~~~m~~~~ 590 (648)
|... |++++|.+.+++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998876543
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.5e-07 Score=89.36 Aligned_cols=187 Identities=5% Similarity=-0.118 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLT 466 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 466 (648)
+...+..+...+.+.|++++|...|+...+ .+...|..+..+|...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345566777888888999999999887652 36778888999999999999999999988874 44 4577888888
Q ss_pred HhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH---HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 006364 467 VCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD---MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 467 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 542 (648)
++...|++++|...|+...+. .|+ ...+...+. ...+...+.. ......+++..+...+.. + ..|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 899999999999999887654 332 111111111 2222222222 222233344444444433 2 26889
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVLMSNLYAEK-GDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 588 (648)
+.|.+.++++.+.+|++......+..++.+. +++++|.+++.+..+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999888888888888877 778999999987765
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=8.4e-05 Score=76.22 Aligned_cols=200 Identities=7% Similarity=-0.051 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH-HHHhhc
Q 006364 238 DAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSE-KVFDEL 316 (648)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~ 316 (648)
.+..+|++.... .+.+...|...+.-+...|+++.|..+++..+.. +.+...+. .|+...+.++.. .+.+..
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 456677777664 2334556666666677788888888888888877 44433332 233222211111 111111
Q ss_pred C--C-------C---CcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHH--HHHHhccCchhhHHHHHHHHHH
Q 006364 317 S--C-------R---EIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGS--VLNAVGAAEDISLKHGQRCHSH 382 (648)
Q Consensus 317 ~--~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~--ll~a~~~~~~~~~~~a~~~~~~ 382 (648)
. . + ....|...+....+.++.+.|..+|.+. .....+...|.. .+.... .+ +.+.|..+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-~~--d~~~ar~ife~ 345 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-TG--SRATPYNIFSS 345 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH-HC--CSHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH-CC--ChHHHHHHHHH
Confidence 0 0 0 0123444444444555566666666666 311122222321 111111 11 35566666666
Q ss_pred HHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006364 383 IIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEME 450 (648)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (648)
..+.- +.++..+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+..+++++.
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55542 2223334445555555566666666666553 234445555554445555555555555544
No 136
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=7.6e-05 Score=70.66 Aligned_cols=160 Identities=10% Similarity=0.090 Sum_probs=126.5
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc------H
Q 006364 406 GSIFESQRVFNETQE---KSEFAWTAIISALARHGDYE--SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM------I 474 (648)
Q Consensus 406 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 474 (648)
+++++++++++.+.+ ++..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 678888888887764 47778888888888888888 9999999999864 3355667665555556665 8
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 475 HKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEE-AEELVGQIPG-----GPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
+++++.++.++.. .|+ ...|+.+..++.+.|+..+ +..+.+++.. ..++..+..+...+...|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999865 776 8889999999999888544 5567776542 3577889999999999999999999
Q ss_pred HHHHHHh-cCCCCchhHHHHHHH
Q 006364 548 IADALMK-MEPAGSGSYVLMSNL 569 (648)
Q Consensus 548 ~~~~~~~-~~p~~~~~~~~l~~~ 569 (648)
+++.+.+ .+|.....|...++.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 799988777765543
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=2.6e-07 Score=77.98 Aligned_cols=110 Identities=8% Similarity=-0.052 Sum_probs=85.0
Q ss_pred CCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHH
Q 006364 454 VRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVL 529 (648)
Q Consensus 454 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 529 (648)
+.|+ ...+..+...+...|++++|+..|+..... .|+ ...|..+..+|.+.|++++|...+++.. .+.++..|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3443 345566677778888888888888887654 564 7778888888888888888888888764 34466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 566 (648)
..+..++...|++++|...+++++++.|+++......
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 8888899999999999999999999999887664433
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=4.9e-07 Score=73.20 Aligned_cols=93 Identities=6% Similarity=-0.120 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEK 573 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 573 (648)
.+..+...+.+.|++++|...+++.. .+.+...|..+..++...|+++.|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45566778888999999999988765 4457888999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhh
Q 006364 574 GDWEMVAILRKGMKS 588 (648)
Q Consensus 574 g~~~~a~~~~~~m~~ 588 (648)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=2.2e-06 Score=68.55 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGAC 536 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 536 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+.+.|++++|...+++.. .+.+...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555556666666666655433 332 5555555666666666666666555443 223455666666777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 537 RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
...|+++.|...++++.+..|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777766666665543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.1e-06 Score=76.70 Aligned_cols=128 Identities=8% Similarity=0.095 Sum_probs=99.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH-HhhcCCH-
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM-LGRVGRL- 510 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~-~~~~g~~- 510 (648)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .|+ ...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 35678888888888887742 345678888888889999999999999988755 454 7778888888 7788998
Q ss_pred -HHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 006364 511 -EEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 511 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 565 (648)
++|...+++.. .+.+...|..+...+...|+++.|...++++++..|+++.....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 99999988765 34457788889999999999999999999999999988765433
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=1.7e-06 Score=71.76 Aligned_cols=96 Identities=8% Similarity=-0.081 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
+...+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++++|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 36677777777778888888887777654 3445677888888888888888888888888888888888888889999
Q ss_pred HhcCCcHHHHHHHHHHhh
Q 006364 571 AEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 571 ~~~g~~~~a~~~~~~m~~ 588 (648)
...|++++|...+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888999888888887764
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=7.1e-06 Score=78.35 Aligned_cols=162 Identities=15% Similarity=0.015 Sum_probs=121.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQE--K-SE------FAWTAIISALARHGDYESVMNQFKEMENKGV---RPD--SI 459 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 459 (648)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999999875432 1 11 2344566677888999999999999886321 122 34
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC-CH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-----PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP-GL 526 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 526 (648)
+++.+...|...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|...+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732222232 2588899999999999999999988754 111 25
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 006364 527 SVLQSLLGACRIHGNVEMG-ERIADALMKM 555 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 555 (648)
.+|..+...+...|+.+.| ...++++.++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 7878887754
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.9e-06 Score=75.81 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=37.1
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCcHH
Q 006364 404 KRGSIFESQR---VFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENK----GVRPD-SITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 404 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 475 (648)
..|++++|.+ .+..-......++..+...+...|++++|+..+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 333322223445555555555555666665555555431 11111 233444444445555555
Q ss_pred HHHHHHHHhH
Q 006364 476 KGRHLFDSML 485 (648)
Q Consensus 476 ~a~~~~~~m~ 485 (648)
+|...+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.8e-06 Score=70.37 Aligned_cols=110 Identities=11% Similarity=-0.063 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+......+...|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|...+++.. .+.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34455555666677777777777766544 454 6667777777777777777777776654 33456677788888
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 006364 536 CRIHGNVEMGERIADALMKME------PAGSGSYVLMSNLYA 571 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 571 (648)
+...|++++|...++++++++ |.++.....+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888888888888888888888 777777776666554
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=1.1e-06 Score=73.46 Aligned_cols=109 Identities=8% Similarity=-0.056 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGA 535 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 535 (648)
..+..+...+...|++++|+..|+..... .|+ ...|..+..+|.+.|++++|...+++.. .+.++..|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34455566677788888888888877654 564 7777778888888888888888887754 34456677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 536 CRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 536 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
+...|+++.|...+++++++.|.++........+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 89999999999999999999998877765554443
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=2.2e-06 Score=73.78 Aligned_cols=109 Identities=15% Similarity=-0.020 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLG 534 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 534 (648)
...+..+...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|...+++.. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666667777778888888888777654 554 7777888888888888888888887754 3445778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
++...|+++.|...++++++++|+++..|...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998876655443
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=1.6e-06 Score=74.61 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|...++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6788889999999999999999999865 34578899999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999999988765
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=4.3e-06 Score=70.21 Aligned_cols=112 Identities=10% Similarity=0.001 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHH
Q 006364 458 SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQS 531 (648)
Q Consensus 458 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 531 (648)
...+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|...+++.. .+.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444555555555566666665555542 2444 4555556666666666666666665543 2335666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
+..++...|+++.|...+++++++.|.++..+..+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 77778888888888888888888888887777777666544
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=9.7e-07 Score=72.14 Aligned_cols=93 Identities=4% Similarity=-0.033 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hHHH
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-------SYVL 565 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 565 (648)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..+++++++.|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345556666666666666666666543 3344566666777777777777777777777776665532 5666
Q ss_pred HHHHHHhcCCcHHHHHHHHHHh
Q 006364 566 MSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
++.+|...|++++|.+.+++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777777777777776544
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=2.4e-06 Score=69.21 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5778889999999999999999998865 34567889999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006364 572 EKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~~ 589 (648)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999987653
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1.9e-06 Score=77.00 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=87.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH---hcCCCCC-hHHHHHHHHHHhhcCC
Q 006364 434 ARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK---DYHIEPS-PDHYSCMVDMLGRVGR 509 (648)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~~~~~l~~~~~~~g~ 509 (648)
...|++++|.++++..... ......++..+...+...|++++|...+++..+ ..+..|. ...+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444321 112345566666666777777777777766654 1123333 5566667777777777
Q ss_pred HHHHHHHHhhCC----CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----chhHHHHHHHHHhcC
Q 006364 510 LEEAEELVGQIP----GGP-G----LSVLQSLLGACRIHGNVEMGERIADALMKMEP--AG----SGSYVLMSNLYAEKG 574 (648)
Q Consensus 510 ~~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g 574 (648)
+++|...+++.. ..+ + ..++..+...+...|++++|...++++++..+ .+ ...+..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 777776665533 011 1 23455666667777777777777777665432 11 123566777777777
Q ss_pred CcHHHHHHHHHHh
Q 006364 575 DWEMVAILRKGMK 587 (648)
Q Consensus 575 ~~~~a~~~~~~m~ 587 (648)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777776666543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2.7e-06 Score=68.05 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
....+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35677888999999999999999999865 3457888999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHhhC
Q 006364 571 AEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 571 ~~~g~~~~a~~~~~~m~~~ 589 (648)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999887653
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=2.2e-06 Score=76.40 Aligned_cols=168 Identities=9% Similarity=-0.006 Sum_probs=101.9
Q ss_pred HHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHH
Q 006364 399 LDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIH 475 (648)
Q Consensus 399 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 475 (648)
+......|.++++.+.|+...+. ....|..+...+...|++++|+..|++.... .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444456666666666543321 3456677777777888888888888887763 2221100000 000
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 476 KGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 476 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
.-. .. .....|..+..+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 013566677777888888888888777654 34567788888899999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCCcHHHH-HHHHHHh
Q 006364 554 KMEPAGSGSYVLMSNLYAEKGDWEMVA-ILRKGMK 587 (648)
Q Consensus 554 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 587 (648)
++.|.++..+..++.++...|+.+++. ..+..|-
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888777766 4444443
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=4.6e-06 Score=77.09 Aligned_cols=182 Identities=11% Similarity=-0.020 Sum_probs=124.2
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 006364 404 KRGSIFESQRVFNETQE--K-SEFAWTAI-------ISALARHGDYESVMNQFKEMENKGVRPDS--------------- 458 (648)
Q Consensus 404 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 458 (648)
..++...|.+.|.+..+ | ..-.|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887653 2 44567766 4555555555666555554443 33332
Q ss_pred -------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH----H
Q 006364 459 -------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGL----S 527 (648)
Q Consensus 459 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 527 (648)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123345566778888888888887753 3565336666677888888888888888866543432 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCcHHHHHHHHHHhhCC
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKME--PA-GSGSYVLMSNLYAEKGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 590 (648)
++..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|...++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67777888888888888888888887433 33 44577888888888888888888888887643
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=3.8e-06 Score=69.57 Aligned_cols=112 Identities=7% Similarity=-0.072 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSL 532 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 532 (648)
.+...+..+...+...|++++|...|+...+. .|+ ...|..+..++...|++++|...+++.. .+.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34566667777777777777777777777654 454 6677777777888888888877777654 34456778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPA-----GSGSYVLMSNLY 570 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 570 (648)
..++...|+++.|...+++++++.|+ +......+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888888999999999998888877 455555554443
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.35 E-value=3.5e-06 Score=69.23 Aligned_cols=95 Identities=6% Similarity=-0.033 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 7788999999999999999999998864 33478889999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhh
Q 006364 572 EKGDWEMVAILRKGMKS 588 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~ 588 (648)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999988765
No 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=1e-05 Score=69.43 Aligned_cols=127 Identities=7% Similarity=-0.066 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 356667777778888888888888877642 234667777777788888888888888887654 454 677778888
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQS--LLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
++.+.|++++|...+++.. .+.+...+.. ++..+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888887654 2334444433 33346677888888888777654
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=1.9e-06 Score=88.31 Aligned_cols=118 Identities=8% Similarity=-0.025 Sum_probs=97.1
Q ss_pred HHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCC
Q 006364 465 LTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGN 541 (648)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 541 (648)
...+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|.+.+++.. .+.+...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566788899999999888755 676 8888889999999999999999888764 34567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCcHHHHHHHHH
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNL--YAEKGDWEMVAILRKG 585 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 585 (648)
+++|.+.+++++++.|.++..+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999988 8889999999998873
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=5.9e-06 Score=76.41 Aligned_cols=138 Identities=13% Similarity=0.054 Sum_probs=100.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDM 503 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~ 503 (648)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+. . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777788888888888777653 355444445555778888999999988755321 1 121 3467778888
Q ss_pred HhhcCCHHHHHHHHhhCCCC---C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 006364 504 LGRVGRLEEAEELVGQIPGG---P--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSN 568 (648)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 568 (648)
+.+.|++++|+..+++.... | ....+.....++...|+.++|...++++...+|. +..+..|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999998876422 3 3346777888899999999999999999999998 766665543
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=7.1e-06 Score=66.95 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++.+..|.++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 6778888999999999999999998865 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHhhC
Q 006364 572 EKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 572 ~~g~~~~a~~~~~~m~~~ 589 (648)
..|++++|.+.+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999887653
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=6.4e-06 Score=84.01 Aligned_cols=143 Identities=8% Similarity=0.016 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMV 501 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 501 (648)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+... .. .|. ...|..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~------~~~~~~~~~nla 324 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----AS------ESFLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HH------HHHHHHHHHHHH
Confidence 446777777777888888888888777662 2221100 0 00000 00 111 45777888
Q ss_pred HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHH
Q 006364 502 DMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMV 579 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 579 (648)
.+|.+.|++++|+..+++.. .+.+...|..+..++...|+++.|...++++++++|.+..++..++.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888889988888888765 3456788999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHHhh
Q 006364 580 AI-LRKGMKS 588 (648)
Q Consensus 580 ~~-~~~~m~~ 588 (648)
.+ .++.|-.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 64 4555543
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=9.9e-06 Score=67.93 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG----LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
+...+..+...+.+.|++++|...+++.. ..|+ ...|..+...+...|+++.|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 37888899999999999999999998865 4566 678888999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHhh
Q 006364 568 NLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 163
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=1.1e-05 Score=78.49 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCC--C-C---------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQE--K-S---------------EFAWTAIISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
+...+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999987653 2 2 356666666666666666666666666653
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 006364 453 GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEA 513 (648)
Q Consensus 453 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 513 (648)
. +.+...+..+..++...|++++|+..|+++.+. .|+ ...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 223455556666666666666666666666533 444 45555555555555555555
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=2.4e-06 Score=76.25 Aligned_cols=119 Identities=8% Similarity=0.084 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCC---CCh----------------hHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQE---KSE----------------FAWTAIISALARHGDYESVMNQFKEMENK 452 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (648)
...+..+...+.+.|++++|...|++..+ .+. ..|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44567788889999999999999997653 222 56666777777777777777777776663
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 006364 453 GVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 453 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 514 (648)
-+.+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++...++.+++.
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556666666667777777777777766543 454 555666666665555555544
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=6.6e-06 Score=66.40 Aligned_cols=97 Identities=9% Similarity=0.005 Sum_probs=63.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH
Q 006364 461 FLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACR 537 (648)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 537 (648)
+..+...+...|++++|+..|+...+. .|+ ...|..+..++.+.|++++|+..+++.. .+.+...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334445566677777777777777644 564 6677777777777777777777776654 3345667777777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCc
Q 006364 538 IHGNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~ 560 (648)
..|++++|...++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888777654
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=6.1e-06 Score=70.73 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..+|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 456777888888889999999999999999999999999999999999999999888877654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=5.6e-06 Score=67.63 Aligned_cols=95 Identities=5% Similarity=0.056 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG-------SGSYV 564 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 564 (648)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|+++.|...++++.+..|.+ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456667777777788888877777654 34466777888888888888888888888888887766 77888
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 565 LMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999987765
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00099 Score=63.75 Aligned_cols=171 Identities=8% Similarity=0.002 Sum_probs=82.9
Q ss_pred hcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhc-C-CHHH
Q 006364 333 QNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKR-G-SIFE 410 (648)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 410 (648)
..+..++|++++.++..-.+-+...|+.--..+...+. .++++...+..+..... -+..+++.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 33444566666666655333344444443333333330 24555555555554332 2333333333333333 4 5566
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc------
Q 006364 411 SQRVFNETQEK---SEFAWTAIISALARHGDYE--------SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM------ 473 (648)
Q Consensus 411 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 473 (648)
++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 66666666543 4445555444444444444 6666666666642 2244555554444444443
Q ss_pred -HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 006364 474 -IHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR 509 (648)
Q Consensus 474 -~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~ 509 (648)
++++++++++++.. .|+ ...|+.+-..+.+.|+
T Consensus 223 ~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 55666666665533 454 5555555555554443
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=6.8e-06 Score=68.39 Aligned_cols=62 Identities=10% Similarity=-0.103 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKM-------EPAGSGSY----VLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
..|..+..++...|++++|...+++++++ +|+++..| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 89988888 8999999999999999998887653
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.7e-05 Score=79.03 Aligned_cols=187 Identities=8% Similarity=-0.053 Sum_probs=135.1
Q ss_pred HHhhcCCHHHHHHHHhhcCCC-----C---------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH-
Q 006364 401 MYGKRGSIFESQRVFNETQEK-----S---------------EFAWTAIISALARHGDYESVMNQFKEMENK-GVRPDS- 458 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~- 458 (648)
.+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|.+.+.++... +..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345667888888888765421 1 124677889999999999999999887652 112222
Q ss_pred ---HHHHHHHHHhcccCcHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC
Q 006364 459 ---ITFLSVLTVCGRNGMIHKGRHLFDSMLKD---YHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP 524 (648)
Q Consensus 459 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~ 524 (648)
...+.+-..+...|+++++..+++..... .+..+. ...+..++..|...|++++|..++++.. .++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22333444456778999999998877532 233444 6788899999999999999999887643 122
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 525 -GLSVLQSLLGACRIHGNVEMGERIADALMKMEP---AG----SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 525 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
...++..++..|...|+++.|..+++++....+ .+ ...+..++.++...|+|++|...+.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 245788888999999999999999999887542 22 2467788888999999999988776653
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=9.9e-06 Score=63.98 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=61.8
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCC--CHHHHHHHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGP--GLSVLQSLLG 534 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~ 534 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+.+.|++++|...+++.. .+. +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444555555666666666666665543 333 5556666666666666666666666543 122 4666777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcCCCCc
Q 006364 535 ACRIH-GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 535 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 560 (648)
.+... |++++|.+.++++.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777778888777777777654
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=9.6e-06 Score=66.20 Aligned_cols=109 Identities=5% Similarity=-0.071 Sum_probs=66.3
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCC----HHHH
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-----GGPG----LSVL 529 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~ 529 (648)
.+..+...+...|++++|...|+...+. .|+ ...+..+...+...|++++|...+++.. ..++ ..+|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3444444555555555555555555433 232 4555555556666666666665555443 1112 5567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 006364 530 QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE 572 (648)
Q Consensus 530 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 572 (648)
..+...+...|+++.|...++++.+..| ++.....+..++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777888888888888888888888877 56666666665543
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=3.7e-05 Score=62.56 Aligned_cols=104 Identities=8% Similarity=0.057 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGVRPD-SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
+|..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.++..++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 3444555555555555555555555542 222 344444555555555555555555544322 111 0000000
Q ss_pred HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 503 MLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
..+|..+..++...|+++.|.+.+++.++..|+
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666677777777777777777776553
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.3e-05 Score=82.11 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=72.8
Q ss_pred HHHHHhhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCc
Q 006364 398 LLDMYGKRGSIFESQRVFNETQE---KSEFAWTAIISALARHGDYESVMNQFKEMENKGVRP-DSITFLSVLTVCGRNGM 473 (648)
Q Consensus 398 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 473 (648)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+. .| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 33456667777777777775542 35667777777777777777777777777764 33 35666667777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH--HhhcCCHHHHHHHHh
Q 006364 474 IHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM--LGRVGRLEEAEELVG 518 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 518 (648)
+++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777654 343 3444444444 666677777777766
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=1.3e-05 Score=65.34 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKMEPAG---SGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
.+..+..++...|+++.|...++++++..|++ +..+..++.+|...|++++|...++++.
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555555555555 4445555555555555555555555443
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=1e-05 Score=79.81 Aligned_cols=137 Identities=5% Similarity=-0.068 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 006364 424 FAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVD 502 (648)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 502 (648)
..|..+...+.+.|++++|+..|++..+. .|+.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 35666777777777777777777776651 11100 0000 11111 13444 678888999
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVA 580 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 580 (648)
+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...+++++++.|.++..+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765 33467889999999999999999999999999999999999999999999988887775
Q ss_pred HH
Q 006364 581 IL 582 (648)
Q Consensus 581 ~~ 582 (648)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.14 E-value=0.00021 Score=68.39 Aligned_cols=212 Identities=12% Similarity=0.021 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhC-C-ChHHHHHH
Q 006364 372 SLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG-SIFESQRVFNETQE---KSEFAWTAIISALARH-G-DYESVMNQ 445 (648)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~ 445 (648)
..+++..+...++..... +..+++.--..+...| .+++++++++.+.. ++..+|+.-...+.+. + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 445677777777776532 4455666666667777 59999999998764 3667888877777776 7 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCcHH--------HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC-------
Q 006364 446 FKEMENKGVRPDSITFLSVLTVCGRNGMIH--------KGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGR------- 509 (648)
Q Consensus 446 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~------- 509 (648)
++++.+.. +-|...|+.-...+.+.|.++ +++++++++.+. .|. ...|+....++.+.++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99998753 335677766555555555555 899999999865 564 7888888888888886
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHHhc---C------CCCch
Q 006364 510 LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEM-----------------GERIADALMKM---E------PAGSG 561 (648)
Q Consensus 510 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~-----------------a~~~~~~~~~~---~------p~~~~ 561 (648)
++++++.++++. .+-|...|+-+-..+...|+... -..+.+.+.++ . +..+-
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 688988887765 55688899888888877765410 12233333332 1 35566
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
....|+.+|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 788999999999999999999998853
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=4.6e-05 Score=62.03 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHhcccCcHHHHHHHHHHhHHhcCCCCC-h---HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-C---HHHHHHHHH
Q 006364 464 VLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-P---DHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-G---LSVLQSLLG 534 (648)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 534 (648)
+...+...|++++|...|+...+. .|+ . ..+..+..++.+.|++++|...+++.. ..| + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344455666777777777666554 233 2 456666677777777777777766543 112 2 556777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 535 ACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 535 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
++...|+++.|...++++++..|+++........+-
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 888888899999999998888888776655444443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=2.2e-06 Score=68.87 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555555555444
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=3.7e-06 Score=67.50 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=65.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|...+++.. .+.+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777777532000244 6677777788888888888888877754 34456777888888888889999999
Q ss_pred HHHHHHhcCCCCchhHH
Q 006364 548 IADALMKMEPAGSGSYV 564 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~ 564 (648)
.++++++..|.++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999888888876543
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=7e-06 Score=80.01 Aligned_cols=146 Identities=14% Similarity=0.018 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 423 EFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44677777888888888889888888776 3454432 234455555443321 136778888
Q ss_pred HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-hcCCcHHH
Q 006364 503 MLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA-EKGDWEMV 579 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a 579 (648)
+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...++++++++|.++.++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888764 34567788888899999999999999999999999999888888888844 45667777
Q ss_pred HHHHHHHhh
Q 006364 580 AILRKGMKS 588 (648)
Q Consensus 580 ~~~~~~m~~ 588 (648)
...+++|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777776654
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=1.7e-05 Score=75.08 Aligned_cols=110 Identities=5% Similarity=-0.130 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 006364 457 DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLL 533 (648)
Q Consensus 457 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 533 (648)
+...+..+...+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|...+++.. .+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888889999999999999998765 674 8888999999999999999999998865 334677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 006364 534 GACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNL 569 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 569 (648)
.++...|++++|...++++++++|+++..+...++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 999999999999999999999988775444433333
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=7.2e-06 Score=70.29 Aligned_cols=78 Identities=19% Similarity=0.111 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGS-GSYVLMSNLY 570 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 570 (648)
...|..+..+|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678888888899999999988887765 445678889999999999999999999999999999987 5555555554
Q ss_pred H
Q 006364 571 A 571 (648)
Q Consensus 571 ~ 571 (648)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 4
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.001 Score=63.29 Aligned_cols=192 Identities=8% Similarity=-0.033 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC-hHHHHHHH
Q 006364 373 LKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRG--SIFESQRVFNETQE---KSEFAWTAIISALARHGD-YESVMNQF 446 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 446 (648)
++++..++..+..... -+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4455555555555432 24444544444444555 36677777766553 355666666666666666 47777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccc--------------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc----
Q 006364 447 KEMENKGVRPDSITFLSVLTVCGRN--------------GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRV---- 507 (648)
Q Consensus 447 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~---- 507 (648)
+++.+.. +-|...|+.....+.+. +.+++++++++..... .|+ ...|+.+--.+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 7777643 22344444433333222 4567777777776644 564 55665554444444
Q ss_pred -------CCHHHHHHHHhhCC-CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 006364 508 -------GRLEEAEELVGQIP-GGPGLSVLQSLLGAC-----RIHGNVEMGERIADALMKMEPAGSGSYVLMSNLY 570 (648)
Q Consensus 508 -------g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 570 (648)
+.++++++.++++. ..|+. .|..+..++ ...|..++....+.++.+++|...+-|..+..-+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 34556666555543 23332 333222111 1245556666667777777776666665554443
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=1.2e-05 Score=68.53 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCch
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP----GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKMEP------AGSG 561 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 561 (648)
.+..+...+...|++++|.+.+++.. ..+ ...++..+...+...|++++|...++++++..+ ..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444444555555555554444322 001 133455666677777777777777777765432 1245
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 562 SYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678888888899999999888876543
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=1.3e-05 Score=81.42 Aligned_cols=128 Identities=12% Similarity=0.077 Sum_probs=91.1
Q ss_pred hcccCcHHHHHHHHHHhHHhcC--C---CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYH--I---EPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPG-LSVLQS 531 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 531 (648)
+...|++++|+.++++..+... + .|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766553311 1 233 5667777888888888888877776543 2233 346788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCC
Q 006364 532 LLGACRIHGNVEMGERIADALMK-----MEPAGSG---SYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEV 595 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 595 (648)
|...|...|++++|+.+++++++ ++|++|. ....+..++...|++++|..++.+++++..+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88889999999999998888876 4677655 4568888899999999999999999886644444
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=2.5e-06 Score=67.54 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG------SGSYV 564 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 564 (648)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667777888888888888888887754 34567788889999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCcHHHHHHHH
Q 006364 565 LMSNLYAEKGDWEMVAILRK 584 (648)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~ 584 (648)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777655443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00023 Score=74.29 Aligned_cols=169 Identities=6% Similarity=-0.046 Sum_probs=137.4
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 006364 406 GSIFESQRVFNETQE---KSEFAWTAIISALARHGD----------YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNG 472 (648)
Q Consensus 406 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 472 (648)
..-++|.+.++.+.+ .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888887664 356678877777777777 899999999999853 335677887777778888
Q ss_pred --cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc-------
Q 006364 473 --MIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVG-RLEEAEELVGQIP--GGPGLSVLQSLLGACRIH------- 539 (648)
Q Consensus 473 --~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------- 539 (648)
+++++++.++++.+. .|. ...|+.-..++.+.| .++++++.++++. .+-+...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999865 675 888888888888999 8999999999886 345788998888877663
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHH
Q 006364 540 -------GNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 540 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
+.++++.+.++++++.+|.+.++|..+..++...|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988554
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.6e-05 Score=66.10 Aligned_cols=73 Identities=11% Similarity=-0.064 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC-C-------CC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP-G-------GP-GLSVL----QSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++++|...|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66666666667777766666665433 2 45 45578 889999999999999999999999999998876
Q ss_pred HHHHHH
Q 006364 563 YVLMSN 568 (648)
Q Consensus 563 ~~~l~~ 568 (648)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.6e-05 Score=77.42 Aligned_cols=152 Identities=10% Similarity=0.062 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 006364 392 PIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRN 471 (648)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 471 (648)
...+..+...|.+.|++++|...|+.....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888999999999999999987653211111 1223333444433221 13677788888889
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH-HHHcCCHHHHHH
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-GLSVLQSLLGA-CRIHGNVEMGER 547 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~a~~ 547 (648)
|++++|+..++...+. .|+ ...|..+..+|...|++++|...|++.. ..| +..++..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888754 565 7888889999999999999999998875 334 34455555544 234566778888
Q ss_pred HHHHHHhcCCCCch
Q 006364 548 IADALMKMEPAGSG 561 (648)
Q Consensus 548 ~~~~~~~~~p~~~~ 561 (648)
.++++++..|.++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999888887653
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.96 E-value=4e-05 Score=59.22 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 523 GPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+.++..|..+...+...|+++.|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346778888999999999999999999999999999999999999999999999999999887654
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=2.8e-05 Score=66.16 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENKGV-RPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS----PD 495 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 495 (648)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555666666665555543210 011 134555556666667777776666665432111111 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 496 HYSCMVDMLGRVGRLEEAEELVGQIP----GGP----GLSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
.+..+...+...|++++|.+.+++.. ... ...++..+...+...|+++.|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666777777777777777665543 011 13456667778888888888888888877653
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00011 Score=74.45 Aligned_cols=158 Identities=10% Similarity=0.014 Sum_probs=120.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCCh
Q 006364 431 SALARHGDYESVMNQFKEMENKGVRPDS----------------ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSP 494 (648)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 494 (648)
..+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4567889999999999999875322111 246778899999999999999999887653333332
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 006364 495 ----DHYSCMVDMLGRVGRLEEAEELVGQIP-------GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKME------ 556 (648)
Q Consensus 495 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 556 (648)
...+.+...+...|++++|..+++... ..+ ...++..|...+...|+++.|...++.+....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 234555566677899999998876543 222 35678889999999999999999999987642
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|....+|..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22346899999999999999999999987653
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=5.7e-05 Score=56.91 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYA 571 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 571 (648)
...+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|+++.|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5567777778888888888888877654 33466778888888999999999999999999999999999999998887
Q ss_pred hcC
Q 006364 572 EKG 574 (648)
Q Consensus 572 ~~g 574 (648)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=0.0022 Score=61.11 Aligned_cols=177 Identities=11% Similarity=-0.003 Sum_probs=131.3
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc-HHHHHHHH
Q 006364 408 IFESQRVFNETQE---KSEFAWTAIISALARHGD--YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM-IHKGRHLF 481 (648)
Q Consensus 408 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 481 (648)
+++++.+++.+.. ++..+|+.-.-.+...|+ +++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777776653 477889888888888884 899999999999863 3466777776666677777 69999999
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHHHhhc--------------CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc-----
Q 006364 482 DSMLKDYHIEPS-PDHYSCMVDMLGRV--------------GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIH----- 539 (648)
Q Consensus 482 ~~m~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 539 (648)
+.+.+. .|+ ...|+....++.+. +.++++++.+.+.. .+-|..+|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999866 565 77777776666655 45888999888765 566888898666665554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCCcHHHHHHHHHHhh
Q 006364 540 ------GNVEMGERIADALMKMEPAGSGSYVLMSNLY---AEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 540 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 588 (648)
+-++.+.+.+++++++.|++.-.+..++.+. ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999855544443332 245777788888887764
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=5.1e-05 Score=74.75 Aligned_cols=112 Identities=4% Similarity=-0.019 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI 538 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 538 (648)
..+..+...+.+.|++++|+..|++..+. .|... .....+++.. ..+.+..+|..+..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 34555666666777777777777666532 11100 0001111111 012245678889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 539 HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 539 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.|++++|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987764
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.83 E-value=0.00012 Score=74.58 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGP-G---------------LSVLQSLLGACRIHGNVEMGERIADALMKME 556 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 556 (648)
...|..+...|.+.|++++|...|++.. ..| + ..+|..+..++...|+++.|...++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344444555555555555555554432 011 1 5778899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 557 PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 557 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|.++.+|..++.+|...|++++|...+++..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998775
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=1.5e-05 Score=66.16 Aligned_cols=47 Identities=6% Similarity=0.171 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------CcHHHHHHHHHHhh
Q 006364 542 VEMGERIADALMKMEPAGSGSYVLMSNLYAEKG-----------DWEMVAILRKGMKS 588 (648)
Q Consensus 542 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~ 588 (648)
+++|+..++++++++|+++.+|..++++|...| ++++|.+.+++..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 679999999999999999999999999999875 89999999988765
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=4.6e-05 Score=60.65 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.+...|..+...+...|+++.|...++++++.+|.++..|..++.+|...|++++|...+++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666777777777777777777777777777777777777777777777777777766543
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.78 E-value=0.00015 Score=54.73 Aligned_cols=69 Identities=7% Similarity=-0.046 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 523 GPGLSVLQSLLGACRIHGN---VEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
++++..+..+..++...++ .++|...++++++.+|+++.....++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677888888888866655 69999999999999999999999999999999999999999999987543
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.00035 Score=57.62 Aligned_cols=89 Identities=2% Similarity=-0.148 Sum_probs=47.4
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---
Q 006364 500 MVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEPAGSGSYVLMSNLYAE--- 572 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 572 (648)
|...|...+.+++|.+.+++.....++..+..|...|.. .+|.++|.+.++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455554444333444445555555544 45556666666665554 345556666666665
Q ss_pred -cCCcHHHHHHHHHHhhCC
Q 006364 573 -KGDWEMVAILRKGMKSKG 590 (648)
Q Consensus 573 -~g~~~~a~~~~~~m~~~~ 590 (648)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666555444
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=9.8e-05 Score=61.28 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 006364 540 GNVEMGERIADALMKMEPAGS 560 (648)
Q Consensus 540 g~~~~a~~~~~~~~~~~p~~~ 560 (648)
|++++|.+.|+++++++|++.
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999985
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00029 Score=55.31 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 524 PGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
++...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667888999999999999999999999999999999999999999999999999999998765
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00042 Score=54.90 Aligned_cols=79 Identities=6% Similarity=-0.090 Sum_probs=51.7
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006364 477 GRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALM 553 (648)
Q Consensus 477 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 553 (648)
++..|+... ...|+ ...+..+...|.+.|++++|...+++.. .+.+...|..+..++...|+++.|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555554 23454 6666666777777777777777666543 23446667777777777777777887777777
Q ss_pred hcCCC
Q 006364 554 KMEPA 558 (648)
Q Consensus 554 ~~~p~ 558 (648)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.47 E-value=0.00053 Score=69.67 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=82.7
Q ss_pred HHHhCCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHhcccCcHHHHHHHHHHhHHh----cC-CCCC-hHHHH
Q 006364 432 ALARHGDYESVMNQFKEMENK---GVRPD----SITFLSVLTVCGRNGMIHKGRHLFDSMLKD----YH-IEPS-PDHYS 498 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~-~~p~-~~~~~ 498 (648)
.+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+. +| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777776542 12232 256777788888888888888877776532 22 2344 66788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC---------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 499 CMVDMLGRVGRLEEAEELVGQIP---------GGPGLSV-LQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
.|..+|...|++++|+.++++.. ..|+... ...+..++...+.++.|+..+.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877653 2344333 34444566678888899988888765
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.45 E-value=0.00015 Score=72.62 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=79.4
Q ss_pred HHHhhcCCHHHHHHHHhhCC---------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCc---hhH
Q 006364 502 DMLGRVGRLEEAEELVGQIP---------GGP-GLSVLQSLLGACRIHGNVEMGERIADALMKM-----EPAGS---GSY 563 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 563 (648)
..+.+.|++++|+.++++.. ..| ...+++.|..+|...|++++|+.+++++++. +|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666655432 111 1346777778888888888888888887753 45554 468
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCceeEEEEcCCCceEEEecCCCCCcChHHHHHHHHHHHHHhc
Q 006364 564 VLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFSWADVGDIDGLHGFSSGDNTHPRSEEIYRMAECLGSEMK 636 (648)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 636 (648)
..|+.+|...|++++|..++++..+--. ..-...||.+.+++.+|+....+++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~--------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR--------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999987654110 0112679999999999988877664
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.42 E-value=0.003 Score=65.76 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=120.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCc----------HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 006364 436 HGDYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGRNGM----------IHKGRHLFDSMLKDYHIEPS-PDHYSCMVDM 503 (648)
Q Consensus 436 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 503 (648)
....++|++.++++.. +.|+. ..|+.--.++.+.|+ ++++++.++.+.+. .|. ..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3446788999999998 56664 455554455555565 99999999999865 676 8888888888
Q ss_pred HhhcC--CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-----
Q 006364 504 LGRVG--RLEEAEELVGQIP--GGPGLSVLQSLLGACRIHG-NVEMGERIADALMKMEPAGSGSYVLMSNLYAEK----- 573 (648)
Q Consensus 504 ~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 573 (648)
+.+.| ++++++++++++. .+-+..+|+.-...+...| ..+++.+.++++++.+|.+.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 89999 7799999999886 5568889999998999999 899999999999999999999999999998874
Q ss_pred ---------CCcHHHHHHHHHHh
Q 006364 574 ---------GDWEMVAILRKGMK 587 (648)
Q Consensus 574 ---------g~~~~a~~~~~~m~ 587 (648)
++++++.+.+++..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 45678877776543
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00024 Score=70.89 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCccCCcee
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMK-----MEPAGS---GSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRKEVGFS 598 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 598 (648)
.+++.|..+|...|++++|+.+++++++ ++|++| ..|..|+.+|...|++++|..++++..+--.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~------- 413 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME------- 413 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-------
Confidence 4567777777778888888887777775 345554 4688999999999999999999987654110
Q ss_pred EEEEcCCCceEEEecCCCCCcChHHHHHHHHH
Q 006364 599 WADVGDIDGLHGFSSGDNTHPRSEEIYRMAEC 630 (648)
Q Consensus 599 ~~~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 630 (648)
..-...||.+.+++.+|++
T Consensus 414 -------------~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 414 -------------VAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -------------HHTCTTCHHHHHHHHHHHC
T ss_pred -------------HHcCCCChHHHHHHHHHhc
Confidence 0112679999998887763
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.37 E-value=0.00065 Score=50.84 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+...|..+...+...|+++.|...++++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888889999999999999999999999999999999999999999999999999988765
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.37 E-value=0.0029 Score=51.94 Aligned_cols=112 Identities=9% Similarity=-0.051 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHH
Q 006364 437 GDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGR----VGRLEE 512 (648)
Q Consensus 437 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 512 (648)
+++++|+..|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34433 666777888889999999998754 356778888888887 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRI----HGNVEMGERIADALMKMEP 557 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 557 (648)
|.+++++.....++..+..|...+.. .+|.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987766778888889988888 8999999999999988754
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.17 E-value=0.001 Score=51.06 Aligned_cols=64 Identities=6% Similarity=-0.088 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEP 557 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 557 (648)
...+..+..+|.+.|++++|...+++.. .+.+...|..+..++...|++++|...+++++++.|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5555666666666666666666665543 223445566666666666666666666666666544
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.016 Score=55.48 Aligned_cols=135 Identities=10% Similarity=-0.025 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc--------cCcHHHHHHHHHHhHHh
Q 006364 422 SEFAWTAIISALAR--HG---DYESVMNQFKEMENKGVRPDS-ITFLSVLTVCGR--------NGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 422 ~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~ 487 (648)
+...|...+.+... .+ ...+|+.+|++..+ ..|+- ..|..+..++.. ..........+.... .
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~-a 269 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV-T 269 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH-h
Confidence 55666666655332 22 34778888888877 45663 344433333320 000011111111110 0
Q ss_pred cCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 488 YHIEP-SPDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 488 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
....| +..+|..+...+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 01112 24455554444444455555555555443 22444444444445555555555555555555555544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.07 E-value=0.0027 Score=48.39 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=50.6
Q ss_pred HHHHHhhcCCHHHHHHHHhhCC--CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 500 MVDMLGRVGRLEEAEELVGQIP--GGPGLS-VLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
....+.+.|++++|...+++.. .+.+.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3556677888888888887654 334566 788888888889999999999999999999988776
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.0076 Score=57.61 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHhcc-----cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---cC-----C---HHHHHHH
Q 006364 454 VRPDSITFLSVLTVCGR-----NGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGR---VG-----R---LEEAEEL 516 (648)
Q Consensus 454 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 516 (648)
.+.+...|...+++... .....+|+.+|++..+. .|+ ...|..+..+|.- .+ . +..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45667777777766532 34468899999999855 898 6666655444421 11 1 1222322
Q ss_pred HhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 517 VGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 517 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
...+. .+.++.+|..+...+...|+.+.|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22232 356778888888888888999999999999999996 4678899999999999999999999876553
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.002 Score=64.33 Aligned_cols=94 Identities=10% Similarity=-0.130 Sum_probs=61.7
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCC---CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHHHH
Q 006364 470 RNGMIHKGRHLFDSMLKDY--HIE---PS-PDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPG-LSVLQSLL 533 (648)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 533 (648)
..|++++|..++++..+.. -+. |+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456677776666654321 122 23 5567777777777777777777766543 2243 34578888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCchhH
Q 006364 534 GACRIHGNVEMGERIADALMK-----MEPAGSGSY 563 (648)
Q Consensus 534 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 563 (648)
..|..+|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 888888888888888888876 357666543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.91 E-value=0.0024 Score=48.64 Aligned_cols=58 Identities=22% Similarity=0.413 Sum_probs=53.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCcHHHHHHHHHHhhC
Q 006364 532 LLGACRIHGNVEMGERIADALMKMEPAGSG-SYVLMSNLYAEKGDWEMVAILRKGMKSK 589 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 589 (648)
....+...|+++.|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999 9999999999999999999999987653
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.84 E-value=0.088 Score=41.33 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=95.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 006364 433 LARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE 512 (648)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 512 (648)
+.-.|..++..++..+.... .+..-||-++.-....-+-+-..+.++..-+-|.+.| +|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34567788888888887653 2344455555544444555556666666644443332 333333
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCc
Q 006364 513 AEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVR 592 (648)
Q Consensus 513 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 592 (648)
....+-.+. .+.......+.....+|.-+.-.+++..++..+|.+|+....++++|.+.|+..++.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333333322 233345566778888999998899988877778888999999999999999999999999999999885
Q ss_pred c
Q 006364 593 K 593 (648)
Q Consensus 593 ~ 593 (648)
-
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0045 Score=61.83 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=59.6
Q ss_pred hcccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHH
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYH--IEPS----PDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPG-LSVLQS 531 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 531 (648)
+...|++++|+.++++..+... +.|+ ..+++.++.+|...|++++|+.++++.. ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4445566666666665543211 1222 4556666667777777777766665443 2233 335777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 006364 532 LLGACRIHGNVEMGERIADALMK-----MEPAGSGSYV 564 (648)
Q Consensus 532 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 564 (648)
|...|...|++++|+.+++++++ ++|++|.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 78888888888888888888775 4677765543
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.018 Score=44.29 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP---------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSY 563 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 563 (648)
+...+..|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566667777777777777665533 124567888999999999999999999999999999998775
Q ss_pred HHHH
Q 006364 564 VLMS 567 (648)
Q Consensus 564 ~~l~ 567 (648)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
No 220
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.21 E-value=1.4 Score=45.75 Aligned_cols=114 Identities=14% Similarity=0.019 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 006364 438 DYESVMNQFKEMENKG-VRPDSI--TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAE 514 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 514 (648)
+.+.|..+|......+ +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876533 322221 2233333445555344555555554332 334333444444555779999999
Q ss_pred HHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006364 515 ELVGQIPGGP--GLSVLQSLLGACRIHGNVEMGERIADALMK 554 (648)
Q Consensus 515 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 554 (648)
..|+.|+..+ .....--+..+....|+.+.|..+++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999887542 233333455677788999999998888875
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.05 E-value=0.025 Score=51.68 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCcHHHHHHHHHHhhCCCccCCc
Q 006364 526 LSVLQSLLGACRI-----HGNVEMGERIADALMKMEPAG-SGSYVLMSNLYAEK-GDWEMVAILRKGMKSKGVRKEVG 596 (648)
Q Consensus 526 ~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~ 596 (648)
...|..|+..|.. -|+.++|++.|+++++++|+. ..+++..+..++.. |+.+++.+.+++......+.+|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 4455666666665 488999999999999999974 89999999988884 88999999998888777665554
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.017 Score=47.22 Aligned_cols=91 Identities=15% Similarity=0.022 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CC-C--CHHHHHHHHHHHHHcCCHHHH
Q 006364 473 MIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVG---RLEEAEELVGQIP-GG-P--GLSVLQSLLGACRIHGNVEMG 545 (648)
Q Consensus 473 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~a 545 (648)
....+.+.|.+..+. +. ++..+...+..++.+.+ +.+++..+++... .. | ....+-.|.-++.+.|+++.|
T Consensus 13 ~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344455555544332 22 45555556666666666 4556666665543 11 3 245566777788999999999
Q ss_pred HHHHHHHHhcCCCCchhHHH
Q 006364 546 ERIADALMKMEPAGSGSYVL 565 (648)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~~ 565 (648)
.+.++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 99999999999988655443
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.94 E-value=0.0064 Score=59.38 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=141.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006364 90 SEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASAC 169 (648)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 169 (648)
..+.+|+.|-.+..+.|.+.+|++-|= +..|+..|..+|....+.| .+++-+..+...++..-.|. .=+.|+-+|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSG-NWEELVKYLQMARKKARESY--VETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTCCSTT--TTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 456778888888888888888877653 3467778888999998888 88777777665555433343 335788888
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc-CChhhHHHHHHHHHH
Q 006364 170 GHEKNLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS-MNREDAVSLFKEMRL 248 (648)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-g~~~~a~~~~~~m~~ 248 (648)
++.+++.+-.+++. .||..-...+-+-|...|.++.|.-+|..+..-.-.+ .+++. |++..|++.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLA-stLV~L~~yq~AVdaArK--- 195 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA-STLVHLGEYQAAVDGARK--- 195 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTS-SSSSSCSGGGSSTTTTTT---
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHH-HHHHHHHHHHHHHHHHHh---
Confidence 88888776554443 5677667777888888888888888887776421111 11111 344433332111
Q ss_pred CCCCCChhhHHHHHHHHhcCCchHHHH------------------------------HHHHHHHHhcC-CCCchhHHHHH
Q 006364 249 DGVCPNDVTFIGLIHAISIGNLVKEGR------------------------------MIHGLCIKTNF-LSEPSVCNCLI 297 (648)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~~~~~~a~------------------------------~~~~~~~~~~~-~~~~~~~~~li 297 (648)
.-+..||--+-.+|...+.+..|. .+++.-. |+ .....+++-|.
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELa 270 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELA 270 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHH
Confidence 124455655555665555444432 2222211 11 23445567777
Q ss_pred HHHHhcCChHHHHHHHhhc----CCC-------CcccHHHHHHHHHhcCCcHHHHH
Q 006364 298 TMYARFESMQDSEKVFDEL----SCR-------EIISWNALISGYAQNGLSLAAVQ 342 (648)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~A~~ 342 (648)
-.|++- ++++..+.++.. .-| ....|.-++-.|....+++.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777765 444444444332 222 33578888888888888887754
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.91 E-value=0.057 Score=40.32 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHhhcCC---HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006364 493 SPDHYSCMVDMLGRVGR---LEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAG 559 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 559 (648)
+...+..+..++...++ .++|..++++.. .+.++..+..+...+...|+++.|...|+++++.+|++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46677777777755444 688888887765 44556677777788888888888888888888888873
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.91 E-value=0.063 Score=59.07 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=60.3
Q ss_pred hcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 006364 404 KRGSIFESQR-VFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFD 482 (648)
Q Consensus 404 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 482 (648)
..+++++|.+ ++..+..+ .....++..+.+.|..++|+++.+. | ..-| ......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~f----~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPD-------Q-DQKF----ELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCC-------H-HHHH----HHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCC-------c-chhe----ehhhhcCCHHHHHHHHH
Confidence 4577777777 55333301 1226666777777777777765531 1 1112 22345677888877754
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 483 SMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 483 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
.+ .+...|..+.+.+.+.|+++.|.+.|.++.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 32 346778888888888888888888887765
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.27 Score=53.98 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=57.2
Q ss_pred HhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 006364 402 YGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLF 481 (648)
Q Consensus 402 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 481 (648)
....|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445678888887776653 456788888888888888888888877642 223333333355555444443
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 482 DSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 482 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
+..... | + ++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~-~---~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G---K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C---c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333221 1 1 222333444556666665555443
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.48 E-value=0.25 Score=48.54 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=89.8
Q ss_pred CCChhHHHHHhhcCCCCCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHH
Q 006364 7 SGQFDKALCIFNNLNNPDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIV 84 (648)
Q Consensus 7 ~g~~~~A~~~f~~~~~p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 84 (648)
.|++.+|+..|- +..|...|..+|....+.+ +.+-=|-.|.+...+ ++..=+.|+-+|++.+++.+..++..
T Consensus 67 ~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ayAk~~rL~elEefl~--- 140 (624)
T 3lvg_A 67 KGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN--- 140 (624)
T ss_dssp SSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHHHTSCSSSTTTSTTS---
T ss_pred cCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHhhCcHHHHHHHHc---
Confidence 344444444442 2233444555566555555 222223334333222 33333455666666665554443332
Q ss_pred HhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCC------------------------CCcchHHHHHHHHHcCCCCh
Q 006364 85 KFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPN------------------------KDSVSWNAILSGYTQDGDYG 140 (648)
Q Consensus 85 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~ 140 (648)
.|+..-...+-+-+...|.++.|.-+|..+.. .++.+|.-+-.+|...+ .+
T Consensus 141 ----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~-Ef 215 (624)
T 3lvg_A 141 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK-EF 215 (624)
T ss_dssp ----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC-TT
T ss_pred ----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch-HH
Confidence 34444445555555556666666666655542 25566777777777666 55
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcC-CCCcchHHHHHHHHHhC
Q 006364 141 VEAILALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGY-GTHVSVGNVLMSTYSKC 207 (648)
Q Consensus 141 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 207 (648)
.-|.-.--.+. ........++.-|-..|.+++-..+++.-+ |+ .....+++-|.-.|+|-
T Consensus 216 rLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 216 RLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc
Confidence 44433322222 112223345555666666666666555443 21 23344556666666654
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.33 E-value=0.051 Score=44.48 Aligned_cols=66 Identities=8% Similarity=-0.008 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 523 GPGLSVLQSLLGACRIHG---NVEMGERIADALMKME-P-AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.++..+...+.+++.+.+ +.++|..+++.+.+.+ | .+...+..|+-.|.+.|++++|.+.++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 478888999999999988 6779999999999988 6 4678899999999999999999999998875
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.80 E-value=0.12 Score=39.55 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 525 GLSVLQSLLGACRIHGNVEMGERIADALMKME-------PAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
+..-...++..+...|+++.|..-++.+++.. +..+.++..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556788899999999999999999998753 34466899999999999999999999988764
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.50 E-value=1.2 Score=37.49 Aligned_cols=127 Identities=9% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 006364 401 MYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHL 480 (648)
Q Consensus 401 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 480 (648)
....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... |..+.--|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877766 4566788888888888888888888877542 23333334445666555444
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006364 481 FDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIADA 551 (648)
Q Consensus 481 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 551 (648)
-+....+ | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.++.+.
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHH
Confidence 4333222 1 13334444556777777777776654222111 112335555555555544
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.48 E-value=1.4 Score=34.74 Aligned_cols=140 Identities=8% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChHHHH
Q 006364 231 MISMNREDAVSLFKEMRLDGVCPNDVTFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEPSVCNCLITMYARFESMQDSE 310 (648)
Q Consensus 231 li~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 310 (648)
+++|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+ |--.|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHHH
Confidence 3446667777766666553 23344444444333333333333333322 222222 2344444444
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCC
Q 006364 311 KVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLD 389 (648)
Q Consensus 311 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (648)
..+-.+.. +....+..+......|.-++--+++..+..+.+|++.....+..||.+.| +..++.+++.+..+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg--~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVG--DERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhhH
Confidence 44443322 22344555666777777777777777765566777777777788888888 777777777777777653
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.45 E-value=0.78 Score=36.00 Aligned_cols=90 Identities=14% Similarity=-0.024 Sum_probs=55.7
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH---HHHHHhhCCCC--C--CHHHHHHHHHHHHHcCCHHHHHH
Q 006364 475 HKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEE---AEELVGQIPGG--P--GLSVLQSLLGACRIHGNVEMGER 547 (648)
Q Consensus 475 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~ 547 (648)
..+.+-|...... +. |+..+--.+..++.+.....+ ++.+++..... | .....-.|.-++.+.|+++.|.+
T Consensus 18 ~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444332 22 555555555666666655444 56666554422 2 22344556678899999999999
Q ss_pred HHHHHHhcCCCCchhHHHH
Q 006364 548 IADALMKMEPAGSGSYVLM 566 (648)
Q Consensus 548 ~~~~~~~~~p~~~~~~~~l 566 (648)
.++.+++.+|.+..+..+.
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999987665443
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.21 Score=52.97 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
...|...|+++.|.++++++...-|.+-.+|..|+.+|...|+|+.|.-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4557789999999999999999999999999999999999999999999998774
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.79 Score=38.50 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=19.9
Q ss_pred cccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccC
Q 006364 69 DHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
..|+++.|.++...+ .+...|..|-+...+.|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444443332 23334444444444444444444444443
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.32 E-value=0.16 Score=46.49 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhc-----CCHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 006364 496 HYSCMVDMLGRV-----GRLEEAEELVGQIP-GGP--GLSVLQSLLGACRI-HGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 496 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~ 558 (648)
.|..|...|.+. |+.++|.+.|++.. ..| +..++......++. .|+.+.+.+.+++++...|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444555555442 55555555555433 222 13444444444444 25555555556665555544
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.78 E-value=0.95 Score=36.53 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 006364 508 GRLEEAEELVGQIP--GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYV 564 (648)
Q Consensus 508 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 564 (648)
++.++|.++|+.+. .+.-..+|-.....-.++|++..|.+++.+++.+.|.+.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 45555555555442 2222667777777778899999999999999998887654433
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.35 E-value=0.74 Score=37.96 Aligned_cols=121 Identities=12% Similarity=0.011 Sum_probs=60.8
Q ss_pred CCCCCCHH--HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC-------hHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 006364 452 KGVRPDSI--TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS-------PDHYSCMVDMLGRVGRLEEAEELVGQIP- 521 (648)
Q Consensus 452 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 521 (648)
.|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+ ..++..+.+++...|++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556543 3344455666777777777766664433222333 2355666777777777777777666532
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 522 ------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 522 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..++..+ ++. ...... .-.. .+.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~--~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRP--STG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccc--ccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1121100 000 000000 0000 1233456678999999999999999998754
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.08 E-value=1.7 Score=35.17 Aligned_cols=54 Identities=6% Similarity=-0.078 Sum_probs=45.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 538 IHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 538 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
..+|.++|..+|+.++.+...-+.+|...++--.+.|+...|.+++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 348999999999999887655577888888888899999999999997776443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.95 E-value=0.78 Score=44.91 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhh-----CCCccCCce
Q 006364 529 LQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKS-----KGVRKEVGF 597 (648)
Q Consensus 529 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 597 (648)
...++.++...|+.+.+...++.+...+|-+...|..++.+|.+.|+..+|.+.+++++. .|+.|.|..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445666777888888888888888888888888899999999999999888888877643 477666543
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.07 E-value=2.7 Score=33.11 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHhhcCCH---HHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 491 EPSPDHYSCMVDMLGRVGRL---EEAEELVGQIP-GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 491 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|+..+--.+..++.+.... .+++.+++... ..| ....+--|.-++.+.|+++.|.+..+.+++.+|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 45555555556666666543 34555555433 223 23445556667777777777777777777777776544
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.06 E-value=1.2 Score=34.96 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCcHHHHHHHHHHhh
Q 006364 523 GPGLSVLQSLLGACRIHGNVEM---GERIADALMKME-P-AGSGSYVLMSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 523 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.|+..+--.+.+++.+.++... +..+++.+...+ | ..-.....|+-.+.+.|++++|.+..+.+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4778888888888888876655 888888877766 4 3456778899999999999999999998874
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.19 E-value=9.8 Score=30.43 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHhhcCCH---HHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 006364 491 EPSPDHYSCMVDMLGRVGRL---EEAEELVGQIP-GGP--GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGS 562 (648)
Q Consensus 491 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 562 (648)
.|+..+--.+..++.+..+. .+++.+++... ..| .....--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 57777777777788887754 45666666543 223 23345556678889999999999999999999988544
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.08 E-value=9.1 Score=43.54 Aligned_cols=165 Identities=10% Similarity=0.064 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhh
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDIS 372 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~ 372 (648)
...++..+.+.+..+-+.++..-.+ .+...--.+..+|...|++++|.+.|.+...++..+..... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~------------~ 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA------------V 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS------------S
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh------------h
Confidence 4456667778888888887665554 34444445667888999999999999987654432221100 0
Q ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhhcCCHHHHHHHHhhc----CCCC----hhHHHHHHHHHHhCCChHHH
Q 006364 373 LKHGQRCHSHIIKVG--LDSDPIVGSALLDMYGKRGSIFESQRVFNET----QEKS----EFAWTAIISALARHGDYESV 442 (648)
Q Consensus 373 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A 442 (648)
... ...+.... ...-..-|..++..+.+.|.++.+.++-... ...+ ...|..+..++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 00111110 1122345677778888888888877665432 2222 12689999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHH
Q 006364 443 MNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHK 476 (648)
Q Consensus 443 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 476 (648)
...+-.+.....+ ...+..|+..++..|..+.
T Consensus 958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9999888765443 3455566666666555444
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.85 E-value=6.1 Score=39.35 Aligned_cols=180 Identities=12% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhc----cc
Q 006364 406 GSIFESQRVFNETQE-----K----SEFAWTAIISALARHGDYESVMNQFKEMEN-KGVRPDSITFLSVLTVCG----RN 471 (648)
Q Consensus 406 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~----~~ 471 (648)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+.. .|..+...+ .+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 678888887754432 1 344577788999999999999888876654 343333332 3333221 12
Q ss_pred C--cHHHHHHHHHHhHH--hcCCCC---ChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CC-CC----HHHHHHHHHHH
Q 006364 472 G--MIHKGRHLFDSMLK--DYHIEP---SPDHYSCMVDMLGRVGRLEEAEELVGQIP---GG-PG----LSVLQSLLGAC 536 (648)
Q Consensus 472 g--~~~~a~~~~~~m~~--~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~----~~~~~~l~~~~ 536 (648)
. +.+.-..+.+.... ...+-- .......|...|...|++.+|.+++..++ .. -+ ...+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 22222222222110 001111 12344678899999999999999998765 11 11 34566677889
Q ss_pred HHcCCHHHHHHHHHHHHh---cCCCCc----hhHHHHHHHHHhcCCcHHHHHHHHHHh
Q 006364 537 RIHGNVEMGERIADALMK---MEPAGS----GSYVLMSNLYAEKGDWEMVAILRKGMK 587 (648)
Q Consensus 537 ~~~g~~~~a~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 587 (648)
...+|+..|..+++++.. -.+.++ ..|...+..+...++|.+|.+.+.+.-
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999998753 123332 467888999999999999888776553
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.58 E-value=4.8 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 520 IPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 520 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
+-.-|++.+..+.+.+|++.+|+..|.++++-+.....+...+|-.+.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 335699999999999999999999999999998876655556666553
No 246
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.28 E-value=14 Score=33.69 Aligned_cols=20 Identities=5% Similarity=-0.094 Sum_probs=10.8
Q ss_pred HHHHHHhCCChhHHHHHhcc
Q 006364 98 LITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~ 117 (648)
.+...++.|+.+-+..+++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444555666655555554
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.26 E-value=4 Score=30.22 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 438 DYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 438 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
+.-+...-++.+....+.|++....+.|.||.+.+++..|.++|+....+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344566666677777789999999999999999999999999999987653 3335567777653
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.75 E-value=3.3 Score=34.14 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHhhCCCC
Q 006364 494 PDHYSCMVDMLGRVGRLEEAEELVGQIPGG 523 (648)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 523 (648)
.+.---+..+|.+.|++++|+.+++.++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344444667777777777777777777643
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.73 E-value=7.5 Score=41.33 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=40.6
Q ss_pred hcccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 468 CGRNGMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 468 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
|...|+++.|+++-++.+. ..|+ -.+|..|..+|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567888888888887764 4776 7888888888888888888888888776
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.49 E-value=51 Score=35.97 Aligned_cols=250 Identities=11% Similarity=-0.005 Sum_probs=130.2
Q ss_pred HHHhcCChHHHHHHHhhcCCC----Cc--ccHHHHHHHHHhcCCcHHHHHHHHHhHh-CC--C-----CCHHHHHHHHHH
Q 006364 299 MYARFESMQDSEKVFDELSCR----EI--ISWNALISGYAQNGLSLAAVQAFFGVIK-ES--K-----PNAYTFGSVLNA 364 (648)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~-----p~~~~~~~ll~a 364 (648)
+....|+.+++..+++.-... +. ..-..+.-+.+..|..++++.++..... .. . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345678888888888876542 11 2233344566677777788888877665 21 0 111111122122
Q ss_pred hccCchhhHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHhhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChH
Q 006364 365 VGAAEDISLKHGQRCHSHIIKVGLD-SDPIVGSALLDMYGKRGSIFESQRVFNETQEK---SEFAWTAIISALARHGDYE 440 (648)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 440 (648)
.+..|..+ +++...+..+....-. ......-+|...|.-.|+-+....++..+.+. ++.-.-++.-|+...|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 22222112 3334444443332110 00112223444455667877777777654322 2223334445566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 006364 441 SVMNQFKEMENKGVRPDSITFL---SVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELV 517 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (648)
.+-.+.+.+... ..| ..-|. .+..+|+..|+.....++++.+.++ ...++.....+.-++.-.|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888763 122 22333 3445788899987777798888654 2223444444444555567766677777
Q ss_pred hhCCCCCCHHHHHHHHHHH--HHcCCH-HHHHHHHHHHH
Q 006364 518 GQIPGGPGLSVLQSLLGAC--RIHGNV-EMGERIADALM 553 (648)
Q Consensus 518 ~~~~~~~~~~~~~~l~~~~--~~~g~~-~~a~~~~~~~~ 553 (648)
+.+....++.+-....-++ ...|+- ..+...+..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6555344444433333222 223332 34555555554
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.18 E-value=5.8 Score=38.69 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH----hcCCCCChHHHHH
Q 006364 427 TAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK----DYHIEPSPDHYSC 499 (648)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~ 499 (648)
..++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|++.|+...+ +.|+.|...+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34566777788888888888887764 344677888888888888888888888877643 4688888665433
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.05 E-value=8 Score=28.43 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=62.0
Q ss_pred cChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHH
Q 006364 71 EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEM 150 (648)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m 150 (648)
..-++|..|-+.+...|. ...+.-.-+..+...|++++|..+.+...-||..+|-++-.. +.| ..+++...+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG-l~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLG-LGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc-cHHHHHHHHHHH
Confidence 356777778777776653 333333444667789999999999999999999999887654 566 667777777777
Q ss_pred HHCCCCCChhhHH
Q 006364 151 MRKGLRLDHVSFT 163 (648)
Q Consensus 151 ~~~g~~p~~~t~~ 163 (648)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 34444443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.39 E-value=18 Score=32.60 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=57.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHhhc
Q 006364 432 ALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPD----HYSCMVDMLGRV 507 (648)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l~~~~~~~ 507 (648)
.+.+.|+.++|++....-++. -+-|...-..++.-+|-.|++++|..-++...+- .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 344566666666666665554 2334444455566666667777776666665432 45422 23333322
Q ss_pred CCHHHHHHHHhh--CC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCch
Q 006364 508 GRLEEAEELVGQ--IP--GGPGLSVLQSLLGACR--IHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 508 g~~~~A~~~~~~--~~--~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
....+ ++|.. .| ..........++.+.. ..|+.+.|..+-+.+.+.-|..+.
T Consensus 78 E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111 12221 11 1111222333444433 346777777777776666655443
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.87 E-value=9 Score=30.19 Aligned_cols=81 Identities=9% Similarity=0.040 Sum_probs=51.7
Q ss_pred HHHHHHHH-HC-CCCCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHH
Q 006364 443 MNQFKEME-NK-GVRPDSITFLSVLTVCGRNG---MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEE 515 (648)
Q Consensus 443 ~~~~~~m~-~~-g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 515 (648)
+..|++.- +. +-.|+..|--....++.++. +..+|+.+++...+. .|. .+.+-.|.-++.|.|++++|.+
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444433 22 34455555444455554443 566788888888766 353 6667777888889999999998
Q ss_pred HHhhCC-CCCCH
Q 006364 516 LVGQIP-GGPGL 526 (648)
Q Consensus 516 ~~~~~~-~~~~~ 526 (648)
..+.+. ..|+-
T Consensus 100 y~d~lL~~eP~N 111 (134)
T 3o48_A 100 YVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHTTCTTC
T ss_pred HHHHHHhhCCCC
Confidence 888754 44543
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.82 E-value=8.7 Score=43.69 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=73.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 006364 428 AIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRV 507 (648)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 507 (648)
.++..+...+.++-|.++..- ++-+...--.+..++...|++++|.++|.+... ++.++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 455566666666666553321 233433333445566777777777777776531 232211000
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHhcCCcHHHHH
Q 006364 508 GRLEEAEELVGQIP-GGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG-----SYVLMSNLYAEKGDWEMVAI 581 (648)
Q Consensus 508 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~ 581 (648)
....+...+..... ...-..-|..++..+.+++.++.+.+..+.+++..+.+.. .|..+.+.+...|++++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00000111111111 1122334555666666666666666666666654432221 35555666666677776666
Q ss_pred HHHHHhhCCCcc
Q 006364 582 LRKGMKSKGVRK 593 (648)
Q Consensus 582 ~~~~m~~~~~~~ 593 (648)
.+-.+.+...++
T Consensus 960 aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 960 ALMVLSTTPLKK 971 (1139)
T ss_dssp HHHHHHHSSSCH
T ss_pred HHHhCCCHHHHH
Confidence 665555444433
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.32 E-value=32 Score=32.00 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHH----HHHhHh-CCCCCHHHHHHHHHHhccC
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQA----FFGVIK-ESKPNAYTFGSVLNAVGAA 368 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~-~~~p~~~~~~~ll~a~~~~ 368 (648)
.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+ +.+++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4556667888888888877543 22345556666655554 333333 6777777777777666553
Q ss_pred chhh---HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---CChH
Q 006364 369 EDIS---LKHGQRCHSHIIKVG--LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARH---GDYE 440 (648)
Q Consensus 369 ~~~~---~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 440 (648)
.... ..-.........+.| ...++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3111 122222223333333 2357888999999999999999999987633322344444444333332 2222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHh
Q 006364 441 SVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKD 487 (648)
Q Consensus 441 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 487 (648)
++ |...--.++ -|...|+...|..+|+...+.
T Consensus 186 e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 21 111111222 244567888888888877544
No 257
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=82.03 E-value=30 Score=34.04 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=9.4
Q ss_pred HHHHHhCCChhHHHHHhcc
Q 006364 99 ITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~ 117 (648)
+...++.|+.+-+.-+++.
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC
Confidence 3334445555555555544
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.88 E-value=7.1 Score=28.75 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc---CChhhHHHHHHHHHHCC
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---MNREDAVSLFKEMRLDG 250 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---g~~~~a~~~~~~m~~~g 250 (648)
..++|..|-+.+...+- ...+--+-+..+...|++++|..+.+....||...|-++-. |-.+++..-+.++..+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34455555555544432 22222223345667899999999999999999999999887 66666666665655543
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.57 E-value=42 Score=32.49 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=11.3
Q ss_pred HHHHHHhhcCCHHHHHHHHhhc
Q 006364 397 ALLDMYGKRGSIFESQRVFNET 418 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~ 418 (648)
.|...|.+.|+.++..+++...
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555443
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.43 E-value=6.8 Score=28.81 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHhcCCCCCchhhHHHhc---CChhhHHHHHHHHHHCC
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVTGDANKVFRRMHDRNVISWTTMIS---MNREDAVSLFKEMRLDG 250 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---g~~~~a~~~~~~m~~~g 250 (648)
..++|..|-+.+...+- ...+--+-+..+...|++++|..+.+....||...|-++-. |-.+++..-+.++..+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34455555555544432 22222223345667899999999999999999999998887 66666666666666554
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.37 E-value=12 Score=27.53 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=60.8
Q ss_pred cChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHcCCCChHHHHHHHHHH
Q 006364 71 EGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGYTQDGDYGVEAILALIEM 150 (648)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~a~~~~~~m 150 (648)
..-++|..|-+.+...|. ...+.-.-+..+...|++++|..+.+...-||..+|-++-.. +.| ..+++...+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG-l~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLG-LGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc-cHHHHHHHHHHH
Confidence 356777778887776653 333333444667789999999999999999999999888665 445 556666666677
Q ss_pred HHCCCCCChhhHH
Q 006364 151 MRKGLRLDHVSFT 163 (648)
Q Consensus 151 ~~~g~~p~~~t~~ 163 (648)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6655 34444443
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.41 E-value=22 Score=28.38 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHhcccC---cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC
Q 006364 455 RPDSITFLSVLTVCGRNG---MIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQIP-GGPG 525 (648)
Q Consensus 455 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 525 (648)
.|+..|--.+..++.++. +..+++.+++...+. .|+ .+..-.|.-++.|.|++++|.+..+.+. .+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455554444445554443 455677777777655 342 5555566677778888888877777654 3453
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.85 E-value=9.6 Score=29.95 Aligned_cols=63 Identities=10% Similarity=0.204 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 006364 439 YESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDM 503 (648)
Q Consensus 439 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 503 (648)
.-+...-++.+....+.|++......|.+|.+.+|+..|.++|+....+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3445555666666778999999999999999999999999999998765 34446677777653
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.02 E-value=13 Score=29.18 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=39.7
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 006364 519 QIPGGPGLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMS 567 (648)
Q Consensus 519 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 567 (648)
.+-.-|++.+..+.+.+|++.+|+..|.+++|-+.....+...+|-.+.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3445699999999999999999999999999999876555556676553
No 265
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=77.06 E-value=20 Score=35.35 Aligned_cols=142 Identities=10% Similarity=0.017 Sum_probs=62.0
Q ss_pred HHHhhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccCCCC---CcchHHHHHHHHHcCCC
Q 006364 64 LSFCLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEMPNK---DSVSWNAILSGYTQDGD 138 (648)
Q Consensus 64 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 138 (648)
|...+..|+++.++. +.+.|..++.. ...+.+...++.|+.+-+..+++.-... |..-++.|. ..+..|
T Consensus 18 L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g- 91 (437)
T 1n11_A 18 LHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH-CAARIG- 91 (437)
T ss_dssp HHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH-HHHHHT-
T ss_pred HHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH-HHHHCC-
Confidence 333445566544433 34455544422 1223445556677777777776653332 222233333 333445
Q ss_pred ChHHHHHHHHHHHHCCCCCChhh--HHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcc--hHHHHHHHHHhCCChHHHH
Q 006364 139 YGVEAILALIEMMRKGLRLDHVS--FTSAASACGHEKNLELGKQIHGVSIKMGYGTHVS--VGNVLMSTYSKCEVTGDAN 214 (648)
Q Consensus 139 ~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~ 214 (648)
.. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.+..++.. .....+...+..|+.+-+.
T Consensus 92 ~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 92 HT----NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp CH----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 43 23344444455444321 112233334445555444333 333322211 1112344445556665555
Q ss_pred HHHhc
Q 006364 215 KVFRR 219 (648)
Q Consensus 215 ~~~~~ 219 (648)
.+++.
T Consensus 164 ~Ll~~ 168 (437)
T 1n11_A 164 LLLER 168 (437)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 55543
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.28 E-value=33 Score=30.94 Aligned_cols=200 Identities=11% Similarity=0.071 Sum_probs=91.3
Q ss_pred ccCCChhHHHHHhhcCCCCCcc----hHHHHHHhhccCChHHHHHHHHHhCCCCCChh---hHHHHHHHhhcccChhhHh
Q 006364 5 CKSGQFDKALCIFNNLNNPDIV----SWNTVLSGFEKSDDALSFALRMNLIGVVFDAV---TYSTALSFCLDHEGFLFGL 77 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~~p~~~----~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~ 77 (648)
++.|+++-...+++.-..++.. -++.|..+..... .++++.+.+.|..|+.. ..+. +...+..|+.+
T Consensus 13 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~--- 86 (285)
T 1wdy_A 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR--EDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSVK--- 86 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHH---
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHH---
Confidence 4567777777777765443322 2233333332222 23444455556554332 2222 33333445443
Q ss_pred HHHHHHHHhCCCCCcch--HHHHHHHHHhCCChhHHHHHhccCCCCCcc-------------hHHHHHHHHHcCCCChHH
Q 006364 78 QLHSLIVKFGLDSEVYV--GNALITMYSRWGRLVEARRVFDEMPNKDSV-------------SWNAILSGYTQDGDYGVE 142 (648)
Q Consensus 78 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~~ 142 (648)
+.+.+.+.|..++... ..+.+...++.|+.+-+..+++.-..++.. -++.+ ...+..| ..
T Consensus 87 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~-~~-- 161 (285)
T 1wdy_A 87 -LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-MDAAEKG-HV-- 161 (285)
T ss_dssp -HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH-HHHHHHT-CH--
T ss_pred -HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH-HHHHHcC-CH--
Confidence 4444555565443221 123344455677777777776654433221 12222 2333444 43
Q ss_pred HHHHHHHHHHC-CCCCChh---hHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcch--HHHHHHHHHhCCChHHHHHH
Q 006364 143 AILALIEMMRK-GLRLDHV---SFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSV--GNVLMSTYSKCEVTGDANKV 216 (648)
Q Consensus 143 a~~~~~~m~~~-g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~ 216 (648)
++++.+.+. |..++.. -.+.+.. .+..++......+...+.+.|..++... ....+...++.|+.+-+..+
T Consensus 162 --~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 162 --EVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp --HHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 233334433 4443321 2222222 2334444445566667777776655432 22344455556666555555
Q ss_pred Hh
Q 006364 217 FR 218 (648)
Q Consensus 217 ~~ 218 (648)
++
T Consensus 239 l~ 240 (285)
T 1wdy_A 239 LE 240 (285)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.20 E-value=27 Score=29.87 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCC
Q 006364 540 GNVEMGERIADALMK--MEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGV 591 (648)
Q Consensus 540 g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 591 (648)
++...+..+|..+.. ++..-+..|...+..+...|++.+|.++++.=.+++-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 335556666666654 3355556666666666666666666666655444443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.64 E-value=60 Score=30.43 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhc
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQF----KEMENKGVRPDSITFLSVLTVCG 469 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 469 (648)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778899999999987643 234556677766665554 55556788999888777777665
Q ss_pred ccCc--HHHHHHHHHHhH---HhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 006364 470 RNGM--IHKGRHLFDSML---KDYHIEP--SPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNV 542 (648)
Q Consensus 470 ~~g~--~~~a~~~~~~m~---~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 542 (648)
.... .+. ..+.+.++ .++|-.| ++.....+...|.+.|++.+|..-|-. ...+++..+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcC-
Confidence 5432 111 22222221 1224233 467777888999999999999887732 223444566555554444432
Q ss_pred HHHHHHHHHHHhcCCCCchhHHH-HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 543 EMGERIADALMKMEPAGSGSYVL-MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 543 ~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
|.....|.. .+--|...|+...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333332 23346778899999888777654
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.35 E-value=31 Score=36.01 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=44.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh--
Q 006364 327 LISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGK-- 404 (648)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 404 (648)
....+.-.|+++.|++.+.+. ...+.+.+...+.-+.-.+ . ...++.. ..+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~---~~vdAVH~AIaL~~~gLL~--~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF---SEMDAVHLAIGLASLKLFK--I---DSSTRLT--KKP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT---CHHHHHHHHHHHHHTTC--------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc---CchhHHHHHHHHHHcCCcc--C---CCccccc--CCC-cc-cccHHHHHHHHHHHh
Confidence 455667788888888887755 3456666666666554443 1 1111110 001 11 2336667777765
Q ss_pred -cCCHHHHHHHHhhcCC
Q 006364 405 -RGSIFESQRVFNETQE 420 (648)
Q Consensus 405 -~g~~~~A~~~~~~~~~ 420 (648)
.++..+|.+.|-.+.-
T Consensus 368 ~~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITL 384 (661)
T ss_dssp TTTCHHHHHHHHHGGGG
T ss_pred hcCCHHHHHHHHHHHhc
Confidence 5788888887766643
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.51 E-value=7.6 Score=34.97 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHHhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 006364 502 DMLGRVGRLEEAEELVGQ-IPGGP-GLSVLQSLLGACRIHGNVEMGERIADALMKMEPAGSG 561 (648)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 561 (648)
..+.+.|.+++|++.+.. +...| |...-..|+..++..|+++.|.+-++.+.+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 345678888888876654 44444 5555566778888888888888888888888887543
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.63 E-value=17 Score=35.98 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 460 TFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPS--PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 460 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
+...+..-+.+.|+++.|.++|.++... ...+. ...+-..+..+...+++..|...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555443 22222 444555555555555555555554443
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.21 E-value=79 Score=29.61 Aligned_cols=167 Identities=8% Similarity=0.063 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHH----HHhHh-CCCCCHHHHHHHHHHhcc
Q 006364 293 CNCLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAF----FGVIK-ESKPNAYTFGSVLNAVGA 367 (648)
Q Consensus 293 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~-~~~p~~~~~~~ll~a~~~ 367 (648)
|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +...+ +.++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34566668888888888887543 233455666666555554 33334 778888877777777766
Q ss_pred CchhhHHHHHHHHHHH----HHhC--CCCchhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHH
Q 006364 368 AEDISLKHGQRCHSHI----IKVG--LDSDPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYES 441 (648)
Q Consensus 368 ~~~~~~~~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (648)
.....++. ..+.+.+ .+.| ...|+.....+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+...+
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 55212222 2233333 3344 456788889999999999999999998853332333455444444333322111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 442 VMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 442 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
+|...--.++ -|...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222222 34456778888777666554
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.35 E-value=1.4e+02 Score=31.26 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=22.6
Q ss_pred HHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcC
Q 006364 98 LITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQD 136 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 136 (648)
+|--+.|+|++++|.++.++... .-...+-..+..|+..
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 45556788888888888776643 1124566666666643
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.04 E-value=54 Score=26.56 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 545 GERIADALMK--MEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 545 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
+..+|+.+.. ++...+..|...+..+...|++.+|.++++.=.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6777777775 346667778888888888888888888887655554443
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.17 E-value=31 Score=30.21 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=27.3
Q ss_pred HhhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccC
Q 006364 66 FCLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 118 (648)
..+..|+.+.+..+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3345566666666666555555443321 1223344445566666666665543
No 276
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=61.53 E-value=54 Score=28.59 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=12.3
Q ss_pred HHHHHHhCCChhHHHHHhccC
Q 006364 98 LITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~ 118 (648)
.+...+..|+.+-+..+++.-
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNG 100 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHhCC
Confidence 344445667776666666553
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.42 E-value=1e+02 Score=28.55 Aligned_cols=168 Identities=9% Similarity=-0.021 Sum_probs=96.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhc
Q 006364 394 VGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQ----FKEMENKGVRPDSITFLSVLTVCG 469 (648)
Q Consensus 394 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 469 (648)
.|.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778888899998887543 23445667776666554 455556788888877777776654
Q ss_pred ccCcHH-HHHHHHHHhH---HhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---C
Q 006364 470 RNGMIH-KGRHLFDSML---KDYHIEP--SPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIH---G 540 (648)
Q Consensus 470 ~~g~~~-~a~~~~~~m~---~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g 540 (648)
....-+ .=..+.+.+. .+.|-.| ++.....+...|.+.|++.+|..-|-.-. ..++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 0112222221 1112222 46777888888888888888887554211 12344555554444433 3
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHhcCCcHHHHHHHHHHhh
Q 006364 541 NVEMGERIADALMKMEPAGSGSYVL-MSNLYAEKGDWEMVAILRKGMKS 588 (648)
Q Consensus 541 ~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 588 (648)
.-.+ ...|.. .+--|...|+...|..+++...+
T Consensus 183 ~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred Ccch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 222221 22235677899999998887654
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.15 E-value=83 Score=28.56 Aligned_cols=129 Identities=9% Similarity=0.019 Sum_probs=52.9
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccCCC--
Q 006364 45 ALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEMPN-- 120 (648)
Q Consensus 45 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~-- 120 (648)
++.+.+.|..++...-.+.|...+..|+.+-+ +.+.+.|..++.. ...+.+...+..|+.+-+.-+++.-..
T Consensus 47 v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 122 (285)
T 3kea_A 47 VCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM 122 (285)
T ss_dssp HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG
T ss_pred HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 33444445444333222334444455554433 3334445443321 112233344556666666666554222
Q ss_pred -CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcCCCChhHHHHHH
Q 006364 121 -KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHV-SFTSAASACGHEKNLELGKQIH 182 (648)
Q Consensus 121 -~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 182 (648)
+|..-|.+.+...+..| .. ++.+.+.+.|..+... .-.+.+...+..|+.+.+..++
T Consensus 123 ~~~~~g~~t~L~~A~~~~-~~----~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 123 FYGKTGWKTSFYHAVMLN-DV----SIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp GCSSSGGGSHHHHHHHTT-CH----HHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHcC-CH----HHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 22223333344444455 43 2333334444333211 2233344444455555444433
No 279
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.61 E-value=2e+02 Score=31.52 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 94 VGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
-|..++.++.+.++.+.+.++|+...
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36777788888899999999998853
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.47 E-value=26 Score=34.55 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHH--H
Q 006364 393 IVGSALLDMYGKRGSIFESQRVFNETQEK------SEFAWTAIISALARHGDYESVMNQFKEMEN---KGVRPDSIT--F 461 (648)
Q Consensus 393 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t--~ 461 (648)
.....+.+.|.++|+++.|.+.|.++... -+..|-..|..+...+++..+...+++... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667999999999999999999987642 245677788889999999999999998764 333333321 1
Q ss_pred HHHHHHhcccCcHHHHHHHHHHhHHhcCC
Q 006364 462 LSVLTVCGRNGMIHKGRHLFDSMLKDYHI 490 (648)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 490 (648)
..-...+...+++..|-+.|-+....+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 12223456789999999999999877543
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.43 E-value=68 Score=26.36 Aligned_cols=49 Identities=6% Similarity=0.050 Sum_probs=35.9
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCcHHHHHHHHHHhhCCCcc
Q 006364 545 GERIADALMK--MEPAGSGSYVLMSNLYAEKGDWEMVAILRKGMKSKGVRK 593 (648)
Q Consensus 545 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 593 (648)
+..+|..+.. ++..-+..|...+..+...|++.+|.++++.=.+++.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5667777765 446677788888888888888888888887666555433
No 282
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.46 E-value=1.5e+02 Score=29.31 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhcccCcHHHHHHHHHHhHHh-c--CCCCC--h
Q 006364 425 AWTAIISALARHGDYESVMNQFKEMENK--GVRPD---SITFLSVLTVCGRNGMIHKGRHLFDSMLKD-Y--HIEPS--P 494 (648)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~--~~~p~--~ 494 (648)
....|...|...|++.+|..++.++... |..+. ...+...++.|...+++.+|..++.++... + .-.|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788888999999999999998653 32222 135666778899999999999999887432 1 12233 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 495 DHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
..|.+++..+...+++.+|.+.|.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 578888999999999999988776553
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.23 E-value=7.7 Score=36.93 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCC
Q 006364 95 GNALITMYSRWGRLVEARRVFDEMPNKD 122 (648)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 122 (648)
...+|.-|...|+.++|...++++..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 4556666667777777777777766543
No 284
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=57.72 E-value=24 Score=28.41 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=8.1
Q ss_pred HhCCChhHHHHHhcc
Q 006364 103 SRWGRLVEARRVFDE 117 (648)
Q Consensus 103 ~~~g~~~~A~~~~~~ 117 (648)
+..|+.+-+..+++.
T Consensus 43 ~~~~~~~~v~~Ll~~ 57 (156)
T 1bd8_A 43 MMFGSTAIALELLKQ 57 (156)
T ss_dssp SCTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 555555555555544
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.56 E-value=1.5e+02 Score=28.59 Aligned_cols=92 Identities=4% Similarity=-0.056 Sum_probs=55.6
Q ss_pred HHHHHHhhcCCHHHHHHHHhhcCC----CC-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 006364 397 ALLDMYGKRGSIFESQRVFNETQE----KS-----EFAWTAIISALARHGDYESVMNQFKEMENK--GVRPDSITFLSV- 464 (648)
Q Consensus 397 ~li~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l- 464 (648)
-|+..|...|++.+|.+++..+.+ .| +..+-.-+..|...++..++...+...... .+.|++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 477778888888888777765542 12 224555566777788888888877776542 233443322111
Q ss_pred ---HHHhc-ccCcHHHHHHHHHHhHHhc
Q 006364 465 ---LTVCG-RNGMIHKGRHLFDSMLKDY 488 (648)
Q Consensus 465 ---l~a~~-~~g~~~~a~~~~~~m~~~~ 488 (648)
...+. ..+++..|...|-+..+.|
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 12234 6778888877776665443
No 286
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.05 E-value=36 Score=32.45 Aligned_cols=153 Identities=7% Similarity=-0.007 Sum_probs=67.6
Q ss_pred ChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHH
Q 006364 56 DAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEMPNKDSVSWNAILSGY 133 (648)
Q Consensus 56 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 133 (648)
|....+.|..+ +..|+.+.+.. +++.|..++.. ...+.+...+..|+.+-+.-+++.-...+...-.+.+...
T Consensus 17 d~~g~t~L~~A-a~~g~~~~v~~----Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVA-ARKGQTDEVRR----LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHH-HHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred CCCCCCHHHHH-HHcCCHHHHHH----HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence 44444444333 34455544333 33445443321 1123344455667777776666655443332222233334
Q ss_pred HcCCCChHHHHHHHHHHHHCCCCCCh--------------------hhHHHHHHHhcCCC--ChhHHHHHHHHHHHhcCC
Q 006364 134 TQDGDYGVEAILALIEMMRKGLRLDH--------------------VSFTSAASACGHEK--NLELGKQIHGVSIKMGYG 191 (648)
Q Consensus 134 ~~~g~~~~~a~~~~~~m~~~g~~p~~--------------------~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 191 (648)
+..| +.+-+..+++.-...|..|+. .-.+.|. ..+..| +.+ +.+.+++.|..
T Consensus 92 ~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~----~v~~Ll~~ga~ 165 (364)
T 3ljn_A 92 VMAN-KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLE----MIKILVQLGAS 165 (364)
T ss_dssp HHTT-CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHH----HHHHHHHHTCC
T ss_pred HHcC-CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHH----HHHHHHHcCCC
Confidence 4555 554444444443333443332 1122222 233334 333 34444455655
Q ss_pred CCcch--HHHHHHHHHhCCChHHHHHHHhc
Q 006364 192 THVSV--GNVLMSTYSKCEVTGDANKVFRR 219 (648)
Q Consensus 192 ~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 219 (648)
++... ....+...+..|+.+-+..+++.
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 54332 12334445566766666666654
No 287
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=54.68 E-value=50 Score=28.78 Aligned_cols=139 Identities=9% Similarity=0.063 Sum_probs=64.1
Q ss_pred HhhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCCh
Q 006364 66 FCLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYG 140 (648)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 140 (648)
..+..|+.+ +.+.+.+.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++.+. ..+..| ..
T Consensus 17 ~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~-~~ 90 (237)
T 3b7b_A 17 AAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH-LAAKKG-HY 90 (237)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH-HHHHTT-CH
T ss_pred HHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcC-CH
Confidence 334455544 344445555544331 122344555667888887777765433 2333333333 334455 43
Q ss_pred HHHHHHHHHHHHCC-CCCCh---hhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcch--HHHHHHHHHhCCChHHHH
Q 006364 141 VEAILALIEMMRKG-LRLDH---VSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHVSV--GNVLMSTYSKCEVTGDAN 214 (648)
Q Consensus 141 ~~a~~~~~~m~~~g-~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~ 214 (648)
++++.+.+.| ..++. .-.+ .+...+..++.+ +.+.+.+.|..++... ....+...+..|+.+-+.
T Consensus 91 ----~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 91 ----EVVQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp ----HHHHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred ----HHHHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 3444444444 33221 1122 233333445544 4445555665554321 222344445556655555
Q ss_pred HHHhc
Q 006364 215 KVFRR 219 (648)
Q Consensus 215 ~~~~~ 219 (648)
-+++.
T Consensus 162 ~Ll~~ 166 (237)
T 3b7b_A 162 ILLAA 166 (237)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 55443
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=54.60 E-value=1.4e+02 Score=27.78 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006364 526 LSVLQSLLGACRIHGNVEMGERIADALMKMEPA 558 (648)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 558 (648)
..++++-++.+.+++|+..|....+++++++|.
T Consensus 207 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 207 TNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 346777888999999999999999999999985
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.62 E-value=34 Score=31.78 Aligned_cols=72 Identities=8% Similarity=0.033 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhCCCCchhHH
Q 006364 324 WNALISGYAQNGLSLAAVQAFFGVIKESKPNAYTFGSVLNAVGAAEDISLKHGQRCHSHIIKVGLDSDPIVG 395 (648)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ll~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 395 (648)
.+.++.-|...|+.++|...++++....--.......+..+.-+.++...+....++..+.+.|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 457788888899999999999888531111123344455555554322456666777777776665544443
No 290
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=52.01 E-value=83 Score=27.20 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCChhh--HHHHHHHhcCCCChhHHHHHHHHHHHhcCCC
Q 006364 145 LALIEMMRKGLRLDHVS--FTSAASACGHEKNLELGKQIHGVSIKMGYGT 192 (648)
Q Consensus 145 ~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (648)
++++.+.+.|..++... -.+.+...+..++.+.+..+++.+.+.|..+
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34444555666554322 1234555566777777777778788777544
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.22 E-value=64 Score=25.27 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEKS---EFAWTAIISALARHGD--YESVMNQFKEMENKGVRPD 457 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 457 (648)
...++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3557777888899999999999887662 2344555556665432 4567777888877665443
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.45 E-value=68 Score=27.38 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 006364 472 GMIHKGRHLFDSMLKDYHIEPS-PDHYSCMVDMLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 472 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 520 (648)
+...+...+|..|... ||--. ..-|......+...|++.+|.++++.-
T Consensus 93 ~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 93 NNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp TCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3355667777777655 66655 566666667777777777777776643
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.42 E-value=1.2e+02 Score=26.05 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=25.8
Q ss_pred hhcccChhhHhHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChhHHHHHhccCCC
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDSEVY--VGNALITMYSRWGRLVEARRVFDEMPN 120 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~ 120 (648)
.+..|+++... .+.+.|..++.. ...+.+...++.|+.+-+..+++.-..
T Consensus 16 A~~~g~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 16 ATQYGIYERCR----ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCChHHHH----HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 34456554443 344455443321 222345556667777777777665543
No 294
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=50.08 E-value=55 Score=31.28 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCCC
Q 006364 96 NALITMYSRWGRLVEARRVFDEMPNK 121 (648)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~~~~~ 121 (648)
.++|.-|...|++++|.+.++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 34555555556666666666555544
No 295
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=49.05 E-value=56 Score=28.32 Aligned_cols=14 Identities=0% Similarity=-0.536 Sum_probs=6.0
Q ss_pred hhcccChhhHhHHH
Q 006364 67 CLDHEGFLFGLQLH 80 (648)
Q Consensus 67 ~~~~~~~~~a~~~~ 80 (648)
.+..|+++....++
T Consensus 13 A~~~g~~~~v~~ll 26 (231)
T 3aji_A 13 LAYSGKLDELKERI 26 (231)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 33444444444433
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.00 E-value=55 Score=29.81 Aligned_cols=137 Identities=7% Similarity=-0.065 Sum_probs=60.3
Q ss_pred hhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCCCC---CcchHHHHHHHHHcCCCChHHH
Q 006364 67 CLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMPNK---DSVSWNAILSGYTQDGDYGVEA 143 (648)
Q Consensus 67 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~a 143 (648)
.+..|+.+.+. .+.+.|..++..-..+.+...+..|+.+-+..+++.-..+ |..-++.+..+ +..| ..+
T Consensus 38 A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g-~~~-- 109 (285)
T 3kea_A 38 AIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA-VDSG-NMQ-- 109 (285)
T ss_dssp HHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTT-CHH--
T ss_pred HHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH-HHcC-CHH--
Confidence 34455554433 3444454444333344555566677777777776653332 22233333333 3444 432
Q ss_pred HHHHHHHHHCCCCCChhhH---HHHHHHhcCCCChhHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhCCChHHHHHHH
Q 006364 144 ILALIEMMRKGLRLDHVSF---TSAASACGHEKNLELGKQIHGVSIKMGYGTHVS-VGNVLMSTYSKCEVTGDANKVF 217 (648)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 217 (648)
+++.+.+.|..++.... .+.+...+..|+.+.+ +.+++.|..+... .....+...+..|..+-+.-++
T Consensus 110 --~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 110 --TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp --HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 23333333544443221 2333444444554433 3333344332111 3334444455556555544444
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.54 E-value=51 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR 319 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~ 319 (648)
..++.-|...|+.++|.+.++++..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 55666666677777777777766544
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.20 E-value=1.3e+02 Score=24.98 Aligned_cols=18 Identities=0% Similarity=0.091 Sum_probs=10.5
Q ss_pred HHhCCChhHHHHHhccCC
Q 006364 102 YSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 102 ~~~~g~~~~A~~~~~~~~ 119 (648)
.+..|+.+....+++.-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345666666666665543
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.53 E-value=58 Score=28.92 Aligned_cols=23 Identities=0% Similarity=-0.117 Sum_probs=13.7
Q ss_pred HHHHHHhCCChhHHHHHhccCCC
Q 006364 98 LITMYSRWGRLVEARRVFDEMPN 120 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~~~ 120 (648)
.+...+..|+.+-+.-+++.-..
T Consensus 96 ~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 96 ALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC
Confidence 34445566777777777665433
No 300
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=44.07 E-value=1.5e+02 Score=25.37 Aligned_cols=54 Identities=4% Similarity=-0.060 Sum_probs=27.5
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCC---------CchhHHHHHHHHHhcCChHHHHHHHhh
Q 006364 261 LIHAISIGNLVKEGRMIHGLCIKTNFLS---------EPSVCNCLITMYARFESMQDSEKVFDE 315 (648)
Q Consensus 261 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~ 315 (648)
.+...+..|+.+.+..+++.+.+.|..+ |..-. +-+...++.|+.+-+.-+++.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhc
Confidence 3444455566666666666666655432 12222 233444556666666555544
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.67 E-value=66 Score=27.83 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.9
Q ss_pred HHhcCCC
Q 006364 282 IKTNFLS 288 (648)
Q Consensus 282 ~~~~~~~ 288 (648)
.+.|..+
T Consensus 192 l~~ga~~ 198 (231)
T 3aji_A 192 VTQGASI 198 (231)
T ss_dssp HHTTCCS
T ss_pred HHCCCCC
Confidence 3444443
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.55 E-value=1.6e+02 Score=25.39 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=10.6
Q ss_pred HhcCCchHHHHHHHHHHHHhcC
Q 006364 265 ISIGNLVKEGRMIHGLCIKTNF 286 (648)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~ 286 (648)
.+..|+.+....+++.+.+.|.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 3444555555555554444443
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.15 E-value=57 Score=26.49 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 006364 395 GSALLDMYGKRGSIFESQRVFNETQEKS---EFAWTAIISALARHGD--YESVMNQFKEMENKGVRPD 457 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 457 (648)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567778888899999999999987662 3345555556665332 4556777777777665443
No 304
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=41.69 E-value=1.4e+02 Score=24.32 Aligned_cols=20 Identities=5% Similarity=-0.144 Sum_probs=10.0
Q ss_pred HHHHHHhCCChHHHHHHHhc
Q 006364 200 LMSTYSKCEVTGDANKVFRR 219 (648)
Q Consensus 200 li~~~~~~g~~~~A~~~~~~ 219 (648)
.+...+..|+.+-+.-+++.
T Consensus 108 ~L~~A~~~~~~~~v~~Ll~~ 127 (179)
T 3f6q_A 108 PLHYACFWGQDQVAEDLVAN 127 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444555655555555443
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.55 E-value=64 Score=26.18 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCC
Q 006364 294 NCLITMYARFESMQDSEKVFDELSCR 319 (648)
Q Consensus 294 ~~li~~~~~~g~~~~a~~~~~~~~~~ 319 (648)
+.++.-|...|+.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 45666666666666666666666543
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.31 E-value=72 Score=28.18 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 006364 429 IISALARHGDYESVMNQFKEMEN--KGVRP----DSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVD 502 (648)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 502 (648)
-+..+....++++|++++++..+ .+.++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHH
Confidence 34566667777777777776554 12332 1111122222222222222333344444 21 445666666778
Q ss_pred HHhhcCCHHHHHHHHhhC
Q 006364 503 MLGRVGRLEEAEELVGQI 520 (648)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~ 520 (648)
.+.|.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888999999998887543
No 307
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=39.47 E-value=1.1e+02 Score=27.57 Aligned_cols=16 Identities=19% Similarity=-0.153 Sum_probs=0.0
Q ss_pred HHHHHHhCCChhHHHH
Q 006364 98 LITMYSRWGRLVEARR 113 (648)
Q Consensus 98 li~~~~~~g~~~~A~~ 113 (648)
.+...+..|+.++..+
T Consensus 18 ~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 18 GSHMASMDGKQGGMDG 33 (285)
T ss_dssp ----------------
T ss_pred HHHHHhhcCCCCCccc
Confidence 3344444444444433
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.70 E-value=98 Score=21.55 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhccc-ChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChh
Q 006364 46 LRMNLIGVVFDAVTYSTALSFCLDHE-GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 46 ~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
..|.+.|+.++..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 446677877766553 5556666554 56678889998888776666777777777777777543
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.52 E-value=53 Score=29.22 Aligned_cols=53 Identities=11% Similarity=-0.170 Sum_probs=31.4
Q ss_pred HHhhcccChhhHhHHHHHHHHhCCCCCcch-------HHHHHHHHH--hCCChhHHHHHhcc
Q 006364 65 SFCLDHEGFLFGLQLHSLIVKFGLDSEVYV-------GNALITMYS--RWGRLVEARRVFDE 117 (648)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~ 117 (648)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 334466888888888888877776555332 233333321 55776666666553
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.78 E-value=1.3e+02 Score=26.48 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=14.6
Q ss_pred HHHHHhcCCcHHHHHHHHHhHh
Q 006364 328 ISGYAQNGLSLAAVQAFFGVIK 349 (648)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~m~~ 349 (648)
++.+....++++|++++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556667777777777766654
No 311
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.73 E-value=99 Score=29.22 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCC
Q 006364 96 NALITMYSRWGRLVEARRVFDEMPN---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHE 172 (648)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (648)
.+.+...+..|+.+.+..+++.-.. .|..-++.|..+ +..| +. ++++.+.+.|..++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~g-~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA-CKFG-CV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHC-CH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH-HHcC-CH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 3445556677888888888876433 233334444443 3445 44 3444455555555543333344555567
Q ss_pred CChhHHHHHHHHHHHhcCCCC
Q 006364 173 KNLELGKQIHGVSIKMGYGTH 193 (648)
Q Consensus 173 ~~~~~a~~~~~~~~~~~~~~~ 193 (648)
|+.+.+..+++.....|..++
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHhccccCCCHH
Confidence 777777777776555554443
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.66 E-value=1.4e+02 Score=24.14 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=38.9
Q ss_pred ChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 006364 235 NREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSE 289 (648)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 289 (648)
..+++.++|..|...||--... -|......+...|++.+|..++..-++.+-.|-
T Consensus 80 ~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 80 YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3455888888888888766544 445566666777888888888887777666653
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.32 E-value=2.7e+02 Score=26.32 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=12.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhcCCC
Q 006364 396 SALLDMYGKRGSIFESQRVFNETQEK 421 (648)
Q Consensus 396 ~~li~~~~~~g~~~~A~~~~~~~~~~ 421 (648)
+.++.=|...|+.++|.+.++++..|
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p 246 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVP 246 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCC
Confidence 34444444555555555555555443
No 314
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=35.86 E-value=44 Score=30.50 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHhCCChhHHHHHhcc
Q 006364 98 LITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~ 117 (648)
.+...+..|+.+.+..+++.
T Consensus 62 ~L~~Aa~~g~~~~v~~Ll~~ 81 (285)
T 3d9h_A 62 PMHEAAIHGHQLSLRNLISQ 81 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444556666666666654
No 315
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=35.62 E-value=34 Score=30.44 Aligned_cols=53 Identities=6% Similarity=-0.306 Sum_probs=31.0
Q ss_pred HHHhhcccChhhHhHHHHHHHHhCCCCCc-------chHHHHHHHHHhC---CChhHHHHHhcc
Q 006364 64 LSFCLDHEGFLFGLQLHSLIVKFGLDSEV-------YVGNALITMYSRW---GRLVEARRVFDE 117 (648)
Q Consensus 64 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~---g~~~~A~~~~~~ 117 (648)
|...+..|+.+.+..+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhc
Confidence 44455667888887888888777765443 22233 3333444 666666665543
No 316
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.16 E-value=2.7e+02 Score=25.69 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred ccCCChhHHHHHhhcCCCCCcch-------------HHHHHHhhccCC-hHHHHHHHHHhCCCCCChhhHHHHHHHhhcc
Q 006364 5 CKSGQFDKALCIFNNLNNPDIVS-------------WNTVLSGFEKSD-DALSFALRMNLIGVVFDAVTYSTALSFCLDH 70 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~~p~~~~-------------~~~ll~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 70 (648)
+..|..+-+..+++.-..++... ++.|..+..... +..+++-.-....+..-...-.+.+...+..
T Consensus 133 ~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~ 212 (337)
T 4g8k_A 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212 (337)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH
Q ss_pred cChhhHhHHHHHHHHhCCCCCcchHH--HHHHHHHhCCChhHHHHHhccCCC----CCcchHHHHHHHHHcCCCChHHHH
Q 006364 71 EGFLFGLQLHSLIVKFGLDSEVYVGN--ALITMYSRWGRLVEARRVFDEMPN----KDSVSWNAILSGYTQDGDYGVEAI 144 (648)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~~a~ 144 (648)
+.......+.+.+.+.|..++..... +.+...++.|..+.+..+++.-.. +|..-++.|..+..... .
T Consensus 213 ~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~------~ 286 (337)
T 4g8k_A 213 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL------K 286 (337)
T ss_dssp SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC------H
T ss_pred cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC------H
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCChhHHHHHHHHHHHhcCCCCc
Q 006364 145 LALIEMMRKGLRLDHVSFTSAASACGHEKNLELGKQIHGVSIKMGYGTHV 194 (648)
Q Consensus 145 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 194 (648)
++.+.+++.|..+|..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 287 ~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 287 KIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.09 E-value=96 Score=26.78 Aligned_cols=17 Identities=6% Similarity=-0.208 Sum_probs=7.1
Q ss_pred HHHHhCCChHHHHHHHh
Q 006364 202 STYSKCEVTGDANKVFR 218 (648)
Q Consensus 202 ~~~~~~g~~~~A~~~~~ 218 (648)
...+..|+.+-+.-+++
T Consensus 182 ~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 182 HWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33334444444444443
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.67 E-value=2e+02 Score=23.87 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCCcchH--HHHHHHHHhCCChHHHHHH
Q 006364 178 GKQIHGVSIKMGYGTHVSVG--NVLMSTYSKCEVTGDANKV 216 (648)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~ 216 (648)
-.++.+.+++.|..++.... ..-+...++.|+.+-+.-+
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 35566666677766554322 1234444455555444433
No 319
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=34.21 E-value=2.8e+02 Score=25.50 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=11.4
Q ss_pred HHHHHHhCCChhHHHHHhcc
Q 006364 98 LITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~ 117 (648)
.+...+..|+.+-+..+++.
T Consensus 61 ~L~~A~~~g~~~~v~~Ll~~ 80 (351)
T 3utm_A 61 PLHLAAGYNRVRIVQLLLQH 80 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 44444556666666666554
No 320
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=34.20 E-value=2.7e+02 Score=25.59 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=56.8
Q ss_pred ccCCChhHHHHHhhcCC----CCCcchHHHHHHhhccCChHHHHHHHHHhCCCCCChh---hHHHHHHHhhcccChhhHh
Q 006364 5 CKSGQFDKALCIFNNLN----NPDIVSWNTVLSGFEKSDDALSFALRMNLIGVVFDAV---TYSTALSFCLDHEGFLFGL 77 (648)
Q Consensus 5 ~~~g~~~~A~~~f~~~~----~p~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~ 77 (648)
++.|+.+....++.... .+|..-++.|..+..... .++++.+.+.|..++.. ..+. |...+..|+.+
T Consensus 32 ~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~--- 105 (351)
T 3utm_A 32 ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR--VRIVQLLLQHGADVHAKDKGGLVP-LHNACSYGHYE--- 105 (351)
T ss_dssp HHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHH---
T ss_pred HHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCCCcH-HHHHHHCCCHH---
Confidence 45678888888887643 123322333433333322 33444555566555333 2223 33344556654
Q ss_pred HHHHHHHHhCCCCCcch--HHHHHHHHHhCCChhHHHHHhccCCC
Q 006364 78 QLHSLIVKFGLDSEVYV--GNALITMYSRWGRLVEARRVFDEMPN 120 (648)
Q Consensus 78 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~ 120 (648)
+.+.+++.|..++... ..+.+...+..|+.+-+..+++.-..
T Consensus 106 -iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 149 (351)
T 3utm_A 106 -VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149 (351)
T ss_dssp -HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4555556665554321 22344555677888888888776443
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=34.06 E-value=1.1e+02 Score=30.71 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCcHHHHHH
Q 006364 533 LGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGDWEMVAIL 582 (648)
Q Consensus 533 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 582 (648)
+...+-...++.|...|.++..+.|.+...|..|+-+....|+.-+|.-.
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 33344444556666666666666666666666666666666655554433
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.91 E-value=1.7e+02 Score=25.42 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCCcHHHHHHHHH
Q 006364 545 GERIADALMK--MEPAGSGSYVLMSNLYAEKGDWEMVAILRKG 585 (648)
Q Consensus 545 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (648)
...+|..+.. ++..-+..|...+..+...|++.+|.++++.
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444443 2334444555555555555555555555543
No 323
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=33.43 E-value=50 Score=26.39 Aligned_cols=15 Identities=7% Similarity=-0.181 Sum_probs=6.6
Q ss_pred HhcCChHHHHHHHhh
Q 006364 301 ARFESMQDSEKVFDE 315 (648)
Q Consensus 301 ~~~g~~~~a~~~~~~ 315 (648)
+..|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344444444444433
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.30 E-value=1.2e+02 Score=24.47 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhccc-ChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChh
Q 006364 46 LRMNLIGVVFDAVTYSTALSFCLDHE-GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 46 ~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
..|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456778888776654 4455555555 67789999999998876667777777778888887654
No 325
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=33.06 E-value=2.3e+02 Score=26.38 Aligned_cols=126 Identities=17% Similarity=0.098 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhC-C----CCCChhhHHHH---HHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHH
Q 006364 40 DALSFALRMNLI-G----VVFDAVTYSTA---LSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEA 111 (648)
Q Consensus 40 ~a~~~~~~m~~~-g----~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 111 (648)
+|+.+|..+... + ..|+....... +..+.+.-+ -+++.++.+.|+.|..++..-++..+++.=.++.+
T Consensus 167 ~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~ 242 (331)
T 3qye_A 167 EAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFV 242 (331)
T ss_dssp HHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHH
T ss_pred HHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHH
Confidence 788888877643 1 33443222221 222222222 36778888888888888888888888888788888
Q ss_pred HHHhccCCC-CCcchHHHHHHH-------HHcCCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC
Q 006364 112 RRVFDEMPN-KDSVSWNAILSG-------YTQDGDYGVEAILALIEMMRKGLRLDHVSFTSAASACGHEK 173 (648)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~li~~-------~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 173 (648)
.++||.+-. .....+-..+.. ..+.. +.++.+..+..... ..+......+++-.....
T Consensus 243 lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p---~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 243 ARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLP---NLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhCC
Confidence 888886643 121222221111 12334 66677766665332 134445555554443333
No 326
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.01 E-value=2.9e+02 Score=25.41 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCc--HHHHHHHHHHhHHhcCCCC
Q 006364 426 WTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGM--IHKGRHLFDSMLKDYHIEP 492 (648)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p 492 (648)
.+.++.-|...|+.++|...++++....+.| ......+..+..+.++ .+....++..+.+. ++-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCC
Confidence 5567777888888888888888875211111 2334455555555432 45566677777655 4444
No 327
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.66 E-value=1.2e+02 Score=30.48 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhHHhcCC--CCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 006364 459 ITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHI--EPS---PDHYSCMVDMLGRVGRLEEAEELVGQIP 521 (648)
Q Consensus 459 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 521 (648)
..++.+++.|.+.+.++.|..+..+.. +.. .++ ..-+-.+...+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 567888888888999999999888773 111 122 1222344666777888988888776643
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.32 E-value=3.2e+02 Score=30.17 Aligned_cols=45 Identities=4% Similarity=-0.269 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCch----hHHHHHHHHHh
Q 006364 528 VLQSLLGACRIHGNVEMGERIADALMKM-EPAGSG----SYVLMSNLYAE 572 (648)
Q Consensus 528 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~ 572 (648)
-|..++..+..++-++-+.+..+.+++. .++++. .|..+.++.+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 5667777777788888888877777753 344433 34444444443
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.20 E-value=1.1e+02 Score=24.43 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=40.2
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh
Q 006364 46 LRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRL 108 (648)
Q Consensus 46 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 108 (648)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 446667777666544 34444444555677888888887776666666666667777777654
No 330
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.69 E-value=1.2e+02 Score=25.85 Aligned_cols=21 Identities=0% Similarity=-0.255 Sum_probs=12.5
Q ss_pred HHHHHHhCCChhHHHHHhccC
Q 006364 98 LITMYSRWGRLVEARRVFDEM 118 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~~ 118 (648)
.+...+..|+.+-+..+++.-
T Consensus 61 ~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 61 PLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHBT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344455667777666666543
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.78 E-value=1.1e+02 Score=23.42 Aligned_cols=47 Identities=9% Similarity=-0.125 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHh
Q 006364 40 DALSFALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF 86 (648)
Q Consensus 40 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 86 (648)
..--+|+.+....+.|+...--.-|..+...+++..|.++|..+...
T Consensus 44 RL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 44 RLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34456777777777766665555555667788999999999888764
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.73 E-value=1.1e+02 Score=24.04 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=42.1
Q ss_pred HHHhCCCCCChhhHHHHHHHhhccc-ChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChh
Q 006364 47 RMNLIGVVFDAVTYSTALSFCLDHE-GFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 47 ~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45667877766654 3455555555 67788999999988876666666666777777777543
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.37 E-value=1.1e+02 Score=24.54 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=42.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChh
Q 006364 45 ALRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 45 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
-..+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3446677877665543 445555555667789999999988876667767667777788777553
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.31 E-value=77 Score=23.25 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHH
Q 006364 406 GSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMN 444 (648)
Q Consensus 406 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (648)
...+.|.++++.+..++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467889999999999888999999999987777655543
No 335
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.37 E-value=2.7e+02 Score=23.15 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHH
Q 006364 419 QEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLK 486 (648)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 486 (648)
..++...-...+.++.+.+.. +++..+.++.. .++...-...+.++...|. .++...+..+.+
T Consensus 117 ~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 334444444444444444432 23333333332 2344444444445544444 334444444443
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.30 E-value=3.3e+02 Score=24.18 Aligned_cols=18 Identities=6% Similarity=-0.215 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHhhcCC
Q 006364 492 PSPDHYSCMVDMLGRVGR 509 (648)
Q Consensus 492 p~~~~~~~l~~~~~~~g~ 509 (648)
++...-...+.++++.|.
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444455555554
No 337
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=26.95 E-value=2.4e+02 Score=22.56 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=11.8
Q ss_pred HHHHHHhCCChhHHHHHhcc
Q 006364 98 LITMYSRWGRLVEARRVFDE 117 (648)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~ 117 (648)
.+...++.|+.+-+..+++.
T Consensus 50 ~L~~A~~~~~~~~v~~Ll~~ 69 (169)
T 2y1l_E 50 PLHLAAFNGHLEIVEVLLKN 69 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445556666666666654
No 338
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.61 E-value=2.4e+02 Score=22.36 Aligned_cols=109 Identities=6% Similarity=-0.063 Sum_probs=47.1
Q ss_pred HHHHhCCChhHHHHHhccCCC----CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHhcCCC
Q 006364 100 TMYSRWGRLVEARRVFDEMPN----KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSF--TSAASACGHEK 173 (648)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~ 173 (648)
...++.|+.+....+++.-.. .+..-++.+. ..+..| +. ++++.+.+.|..++.... .+.+...+..|
T Consensus 13 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~-~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYN-RV----SVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTT-CH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcC-hH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence 334556777777776664321 1222223333 333445 43 344445555555543321 12233333444
Q ss_pred ChhHHHHHHHHHHHhcCCCCcchH--HHHHHHHHhCCChHHHHHHHh
Q 006364 174 NLELGKQIHGVSIKMGYGTHVSVG--NVLMSTYSKCEVTGDANKVFR 218 (648)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~ 218 (648)
+.+ +.+.+++.|..++.... ...+...+..|+.+-+..+++
T Consensus 87 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 87 HYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 544 33344445554443221 123344445555554444443
No 339
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.22 E-value=1.5e+02 Score=24.31 Aligned_cols=54 Identities=7% Similarity=0.110 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCc
Q 006364 237 EDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLSEP 290 (648)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (648)
+.+.++|..|...||--... .|......+-..|++..|..++..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 45667788888887766544 3445555666677777777777777776655543
No 340
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.11 E-value=2.4e+02 Score=24.52 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC
Q 006364 235 NREDAVSLFKEMRLDGVCPNDV-TFIGLIHAISIGNLVKEGRMIHGLCIKTNFLS 288 (648)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (648)
..+++.++|..|...||.-... -|......+...|++.+|..+|..-++.+-.|
T Consensus 129 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 129 YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3467778888888888766544 44566666777788888888888777776665
No 341
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.71 E-value=3e+02 Score=22.82 Aligned_cols=152 Identities=18% Similarity=0.063 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++...|.. ++...+.++.. .|+...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333334444444444434444444445555655555566666666654 33444444432 3565555556666665
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIAD 550 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (648)
.|+.+ +...+..+.. .|+...-...+.++++.|.. ++...+..+...++..+-...+.++...|+- .+...+.
T Consensus 103 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~ 175 (201)
T 3ltj_A 103 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAAME 175 (201)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHHHH
T ss_pred hCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 55532 3333333332 45666666667777777764 3444444444456666666667777776653 3444444
Q ss_pred HHH
Q 006364 551 ALM 553 (648)
Q Consensus 551 ~~~ 553 (648)
.+.
T Consensus 176 ~~l 178 (201)
T 3ltj_A 176 KLA 178 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.64 E-value=1.8e+02 Score=23.78 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=44.9
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHh--CCCCCcchHHHHHHHHHhCCChh
Q 006364 46 LRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKF--GLDSEVYVGNALITMYSRWGRLV 109 (648)
Q Consensus 46 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~ 109 (648)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 22 ~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 22 KILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34566788876654 35566676767788899999999887 76666666666677788777543
No 343
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.82 E-value=3.2e+02 Score=22.86 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHHhH
Q 006364 456 PDSITFLSVLTVCGRNGMIHKGRHLFDSML 485 (648)
Q Consensus 456 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 485 (648)
+|...-...+.++...+. .++...+..+.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 333333344444444443 23344444443
No 344
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.76 E-value=3.8e+02 Score=23.61 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=46.9
Q ss_pred CCcchHHHHHHhhccCC--hHHHHHHHHHhCCCCC-------ChhhHHHHHHHhh--cccChhhHhHHHHHHHHhC----
Q 006364 23 PDIVSWNTVLSGFEKSD--DALSFALRMNLIGVVF-------DAVTYSTALSFCL--DHEGFLFGLQLHSLIVKFG---- 87 (648)
Q Consensus 23 p~~~~~~~ll~~~~~~~--~a~~~~~~m~~~g~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 87 (648)
+|..-++.|..+..... ....+++.....+... +....+.|..++. +.|+.+-+..+++.-...+
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 34444555555554444 3333444444444322 3344445555553 3577766666666533211
Q ss_pred -----CC-CCcchHHHHHHHHHhCCChhHHHHHhccCCC
Q 006364 88 -----LD-SEVYVGNALITMYSRWGRLVEARRVFDEMPN 120 (648)
Q Consensus 88 -----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 120 (648)
.. .|..-. +.+...++.|+.+-+..+++.-..
T Consensus 89 ~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 89 FVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp HHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCCC
Confidence 11 122222 334445567888888777776443
No 345
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.71 E-value=1.4e+02 Score=29.94 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCcHHHHHHHHHH
Q 006364 527 SVLQSLLGACRIHGNVEMGERIADALMKMEPAG-------SGSYVLMSNLYAEKGDWEMVAILRKGM 586 (648)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m 586 (648)
..++.++..|...+.++.|..+..+.. .|.+ ...+..+|.++.-.++|.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445556666666666666666666553 2321 123455677777777777777776544
No 346
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.62 E-value=1.1e+02 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=30.0
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHH
Q 006364 304 ESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAA 340 (648)
Q Consensus 304 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (648)
...+.|.++++.++.++...|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678899999999998888999999988776765544
No 347
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.53 E-value=1.2e+02 Score=24.24 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=40.3
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh
Q 006364 46 LRMNLIGVVFDAVTYSTALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRL 108 (648)
Q Consensus 46 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 108 (648)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 445667777766543 3344444445 667888888888877666666666667777777754
No 348
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.13 E-value=3.5e+02 Score=22.97 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCCCCHH--HH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 006364 510 LEEAEELVGQIPGGPGLS--VL-----QSLLGACRIHGNVEMGERIADALMKMEPAGSGSYVLMSNLYAEKGD 575 (648)
Q Consensus 510 ~~~A~~~~~~~~~~~~~~--~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 575 (648)
++.|+.+++.+...-+.. .. -..+..|.+.|.+++|.+++++.....+.+...-..|..+-.+..-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 577888888877443311 11 2335678899999999999999887776665555555555444333
No 349
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.66 E-value=1.9e+02 Score=25.39 Aligned_cols=18 Identities=0% Similarity=-0.202 Sum_probs=8.4
Q ss_pred HHHHhCCChHHHHHHHhc
Q 006364 202 STYSKCEVTGDANKVFRR 219 (648)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~ 219 (648)
...+..|+.+-+..+++.
T Consensus 95 ~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 95 HIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334444555544444443
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.44 E-value=5.8e+02 Score=28.07 Aligned_cols=122 Identities=10% Similarity=0.002 Sum_probs=76.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhHhCCCCCHHH------HHHHHHHhccC
Q 006364 295 CLITMYARFESMQDSEKVFDELSCREIISWNALISGYAQNGLSLAAVQAFFGVIKESKPNAYT------FGSVLNAVGAA 368 (648)
Q Consensus 295 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~~------~~~ll~a~~~~ 368 (648)
.++..+...|..+-|.++..-++. ++..--.+..+|...|++++|...|++...++..+... ...++.....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~- 892 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH- 892 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT-
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc-
Confidence 366777788888888877766654 44333456678899999999999999887654322111 1111111100
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhhcCCHHHHHHHHhh----cCCCCh----hHHHHHHHHHHhCC
Q 006364 369 EDISLKHGQRCHSHIIKVGLDSDPIVGSALLDMYGKRGSIFESQRVFNE----TQEKSE----FAWTAIISALARHG 437 (648)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 437 (648)
......-|..++..+.+.+.++.+.++-+. +...|. ..|+.+.++.+..|
T Consensus 893 -------------------~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 893 -------------------QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -------------------CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------------cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011223677888889999998888776553 323333 36777777766544
No 351
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.26 E-value=2e+02 Score=19.85 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHCCCCCChhhHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 006364 149 EMMRKGLRLDHVSFTSAASACGHEK-NLELGKQIHGVSIKMGYGTHVSVGNVLMSTYSKCEVT 210 (648)
Q Consensus 149 ~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 210 (648)
.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4566777776654 34556666554 5667788888887776666666666677777766643
No 352
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.52 E-value=3.6e+02 Score=22.55 Aligned_cols=152 Identities=18% Similarity=0.080 Sum_probs=77.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 006364 391 DPIVGSALLDMYGKRGSIFESQRVFNETQEKSEFAWTAIISALARHGDYESVMNQFKEMENKGVRPDSITFLSVLTVCGR 470 (648)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 470 (648)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++...+.. ++...+.++.. .+|...-...+.++..
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333334444444444433334444444555555555556666666543 33344444432 3555555555556555
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006364 471 NGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRLEEAEELVGQIPGGPGLSVLQSLLGACRIHGNVEMGERIAD 550 (648)
Q Consensus 471 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 550 (648)
.|+. ++...+..+.+ .|+...-...+.++++.|..+ +...+..+...++..+-...+.++...+. ..+...+.
T Consensus 108 ~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 108 IGDE-RAVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcH-HHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 5553 23333333432 466666666667777776643 44444444445666666666666666665 33344444
Q ss_pred HHH
Q 006364 551 ALM 553 (648)
Q Consensus 551 ~~~ 553 (648)
.+.
T Consensus 181 ~~l 183 (211)
T 3ltm_A 181 KLA 183 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 353
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.37 E-value=2e+02 Score=22.86 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=31.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 006364 448 EMENKGVRPDSITFLSVLTVCGRNGMIHKGRHLFDSMLKDYHIEPSPDHYSCMVDMLGRVGRL 510 (648)
Q Consensus 448 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 510 (648)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 35556666665332 2333333344445566777777554 3334444433445666666653
No 354
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.24 E-value=1e+02 Score=20.15 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHH-hcC
Q 006364 236 REDAVSLFKEMRLDGVCPNDVTFIGLIHAI-SIG 268 (648)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~ 268 (648)
.++|.+.|.+|++..-.+...||.-.++.+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367888888887766566677887777776 443
No 355
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.92 E-value=1.5e+02 Score=27.92 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=12.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhh
Q 006364 395 GSALLDMYGKRGSIFESQRVFNE 417 (648)
Q Consensus 395 ~~~li~~~~~~g~~~~A~~~~~~ 417 (648)
...++..+.+....+.+.++|..
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 33444555555555555555553
No 356
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.67 E-value=1.9e+02 Score=23.05 Aligned_cols=138 Identities=9% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCChhhHH--HHHHHhhcccChhhHhHHHHHHHHhCCCCCcchHHHHHHHHHhCCChhHHHHHhccCC
Q 006364 42 LSFALRMNLIGVVFDAVTYS--TALSFCLDHEGFLFGLQLHSLIVKFGLDSEVYVGNALITMYSRWGRLVEARRVFDEMP 119 (648)
Q Consensus 42 ~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 119 (648)
.++++.+.+.|..++..... +.|...+..|+.+.+..+++. ...+........+.+...+..|+.+-+.-+++.-.
T Consensus 16 ~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (167)
T 3v31_A 16 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93 (167)
T ss_dssp HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q ss_pred C---CCcchHHHHHHHHHcCCCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHhcCCCChhHHHHHHHHHHH
Q 006364 120 N---KDSVSWNAILSGYTQDGDYGVEAILALIEMMRKGLRLDHVSF--TSAASACGHEKNLELGKQIHGVSIK 187 (648)
Q Consensus 120 ~---~~~~~~~~li~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~ 187 (648)
. +|..-++.+..+..... .++++.+.+.|..|+.... .+.+...+..|+.+.+..+.+...+
T Consensus 94 ~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 94 DVNEYDWNGGTPLLYAVHGNH------VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp CTTCCCTTSCCHHHHHHHTTC------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCHHHHHHHcCC------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
No 357
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.24 E-value=4.2e+02 Score=22.83 Aligned_cols=50 Identities=6% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHH-----HHHHHHhhcCCHHHHHHHHhhCCCC
Q 006364 474 IHKGRHLFDSMLKDYHIEPS-PDHYS-----CMVDMLGRVGRLEEAEELVGQIPGG 523 (648)
Q Consensus 474 ~~~a~~~~~~m~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~ 523 (648)
++.|+.+|+.+.+...+..+ ..... ..+-.|.+.|.+++|.+++++...+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 56778888888766433222 11222 2244577888888888888876533
No 358
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.19 E-value=3.7e+02 Score=25.31 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-------
Q 006364 493 SPDHYSCMVDMLGRVGRLEEAEELVGQIP--------GGPGLSVLQSLLGACRIHGNVEMGERIADALMKM-E------- 556 (648)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~------- 556 (648)
.+.-|..+...+.|.+++.+|++.+-+.. .+.|..+|.-++..-- +..=.+++...+. +
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn-----eliP~~~k~a~~~~~~~G~~~~ 369 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAN-----DLIPNILKDAVAKADPSGTGST 369 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH-----THHHHHHHHHHTCC--------
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH-----HHhhHHHHhhhhccCCCCcchh
Confidence 35668888888899999888888775432 3456666655543311 0111122222221 1
Q ss_pred --CCCchhHHHHHHHHHhcCCcHH
Q 006364 557 --PAGSGSYVLMSNLYAEKGDWEM 578 (648)
Q Consensus 557 --p~~~~~~~~l~~~~~~~g~~~~ 578 (648)
-.||..+..|..-|.....|+|
T Consensus 370 siL~DpecfA~LLrFYDgIC~WEE 393 (472)
T 3re2_A 370 NLTSDPKFFALVLQFYDGICLWEE 393 (472)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHhhcceeccc
Confidence 2367778888888877666654
Done!