Query 006366
Match_columns 648
No_of_seqs 191 out of 1206
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 23:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 9.2E-39 3.2E-43 298.3 11.2 122 3-124 5-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 2.9E-37 1E-41 286.4 7.2 118 4-124 8-128 (134)
3 2crr_A Stromal membrane-associ 100.0 6.3E-37 2.1E-41 286.3 7.3 121 3-126 9-132 (141)
4 3jue_A Arfgap with coiled-coil 100.0 1.6E-33 5.3E-38 294.8 9.0 125 1-125 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 1.4E-32 4.8E-37 290.7 11.6 122 3-125 14-138 (386)
6 2owa_A Arfgap-like finger doma 100.0 2.2E-31 7.7E-36 248.1 8.7 112 6-121 19-133 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.2E-30 4.1E-35 245.9 6.9 92 1-93 8-103 (149)
8 3dwd_A ADP-ribosylation factor 100.0 2.9E-30 9.8E-35 242.5 8.8 114 6-123 21-145 (147)
9 2p57_A GTPase-activating prote 99.9 1.7E-28 5.8E-33 230.0 8.1 108 6-119 20-131 (144)
10 2b0o_E UPLC1; arfgap, structur 99.9 4.5E-28 1.6E-32 244.2 11.6 120 5-124 24-147 (301)
11 3lvq_E ARF-GAP with SH3 domain 99.9 3.1E-28 1.1E-32 259.9 8.4 122 4-125 4-129 (497)
12 3sub_A ADP-ribosylation factor 99.9 3.8E-28 1.3E-32 231.2 6.9 109 6-120 4-116 (163)
13 1dcq_A PYK2-associated protein 99.9 1.1E-27 3.9E-32 238.4 9.4 118 8-125 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 8.9E-26 3E-30 231.8 8.8 88 6-93 20-110 (329)
15 1u5k_A Hypothetical protein; O 81.8 1.8 6E-05 42.5 5.7 48 21-81 148-195 (244)
16 1gnf_A Transcription factor GA 58.9 5 0.00017 31.0 2.2 36 22-57 3-39 (46)
17 2vut_I AREA, nitrogen regulato 56.4 5.2 0.00018 30.5 1.9 34 24-57 2-36 (43)
18 1tjl_A DNAK suppressor protein 52.5 12 0.00042 35.1 4.2 33 21-53 109-142 (151)
19 3dfx_A Trans-acting T-cell-spe 49.6 6.8 0.00023 32.1 1.7 38 20-57 4-42 (63)
20 4gat_A Nitrogen regulatory pro 48.0 8.5 0.00029 31.8 2.1 37 21-57 7-44 (66)
21 1ffk_W Ribosomal protein L37AE 40.2 16 0.00054 30.9 2.6 40 10-51 13-53 (73)
22 4hc9_A Trans-acting T-cell-spe 40.0 14 0.00046 33.4 2.3 33 23-55 5-38 (115)
23 1d4u_A Nucleotide excision rep 33.3 8 0.00027 34.9 -0.3 31 22-52 4-35 (111)
24 2kgo_A Uncharacterized protein 30.4 6.9 0.00023 35.3 -1.2 31 23-53 56-87 (108)
25 2kae_A GATA-type transcription 30.3 20 0.00069 30.0 1.6 34 22-56 7-43 (71)
26 3g9m_A Glucocorticoid receptor 27.5 23 0.0008 30.3 1.6 31 22-55 1-31 (90)
27 1r4i_A Androgen receptor; AR, 25.5 25 0.00087 31.2 1.5 33 20-55 4-36 (105)
28 4glq_A Methyl-accepting chemot 25.3 22 0.00077 32.6 1.2 26 67-92 132-157 (171)
29 3dzy_D Peroxisome proliferator 25.0 30 0.001 36.8 2.3 31 22-55 49-79 (419)
30 2han_B Ecdysone receptor; tran 25.0 31 0.0011 31.2 2.0 31 22-55 7-37 (119)
31 3k7a_M Transcription initiatio 24.5 24 0.00081 36.7 1.3 31 24-54 22-53 (345)
32 2zet_C Melanophilin; complex, 24.3 26 0.00088 33.0 1.4 34 22-55 67-105 (153)
33 2ebl_A COUP transcription fact 23.7 29 0.001 29.9 1.5 32 21-55 5-36 (89)
34 1hcq_A Protein (estrogen recep 23.6 34 0.0012 29.1 1.9 31 22-55 3-33 (84)
35 2nll_B Protein (thyroid hormon 22.7 27 0.00092 30.8 1.1 29 24-55 2-30 (103)
36 2kq9_A DNAK suppressor protein 21.3 43 0.0015 29.6 2.2 42 9-51 68-110 (112)
37 2han_A Protein ultraspiracle; 21.2 37 0.0013 29.4 1.6 31 22-55 9-39 (93)
38 2a66_A Orphan nuclear receptor 21.0 31 0.0011 31.0 1.2 33 20-55 6-38 (113)
39 4hc9_A Trans-acting T-cell-spe 20.9 55 0.0019 29.4 2.8 37 21-57 57-94 (115)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=9.2e-39 Score=298.34 Aligned_cols=122 Identities=40% Similarity=0.758 Sum_probs=115.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC--CceeecccCCCCHHHHHHHHhcC
Q 006366 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG 80 (648)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSltLDkWt~eEVe~Lq~gG 80 (648)
+|+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+|
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred cHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhcccccCC
Q 006366 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (648)
Q Consensus 81 N~~AN~iwea~~d~~r~~~P~~sd~~~rreFIraKYveKrF~~~ 124 (648)
|.++|++||++++....++|+..+.+.+++||++||++|+|+..
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 99999999999987666778877888899999999999999865
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=286.38 Aligned_cols=118 Identities=30% Similarity=0.603 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcC
Q 006366 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (648)
Q Consensus 4 rke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLDkWt~eEVe~Lq~gG 80 (648)
.++.|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+|
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~G 87 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMG 87 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCH
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHc
Confidence 478889999999999999999999999999999999999999999999999999 49999999999999999999999
Q ss_pred cHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhcccccCC
Q 006366 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (648)
Q Consensus 81 N~~AN~iwea~~d~~r~~~P~~sd~~~rreFIraKYveKrF~~~ 124 (648)
|.++|++||++++.. .+.|.. .+.+++||++||++|+|+..
T Consensus 88 N~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 88 NGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred hHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 999999999999764 344443 35678999999999999976
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.3e-37 Score=286.29 Aligned_cols=121 Identities=30% Similarity=0.632 Sum_probs=109.8
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhc
Q 006366 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (648)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLDkWt~eEVe~Lq~g 79 (648)
.++++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 4999999999999999999999
Q ss_pred CcHHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhcccccCCCC
Q 006366 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKT 126 (648)
Q Consensus 80 GN~~AN~iwea~~d~~r~~~P~~sd~~~rreFIraKYveKrF~~~k~ 126 (648)
||.++|++||++++.. .+.|.. .+.+++||++||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999764 344543 3567899999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.98 E-value=1.6e-33 Score=294.76 Aligned_cols=125 Identities=20% Similarity=0.442 Sum_probs=105.6
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHH
Q 006366 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77 (648)
Q Consensus 1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLDkWt~eEVe~Lq 77 (648)
|+.+|++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 556799999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcCcHHHHHHHhhcCCcccCCCCCC-CchHHHHHHHHHHHhcccccCCC
Q 006366 78 NGGNQRAREIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (648)
Q Consensus 78 ~gGN~~AN~iwea~~d~~r~~~P~~-sd~~~rreFIraKYveKrF~~~k 125 (648)
.+||.++|+|||++|+....++|.. ++.+.+++||++||++|+|+...
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999998643344433 44567788999999999998763
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=1.4e-32 Score=290.72 Aligned_cols=122 Identities=24% Similarity=0.465 Sum_probs=111.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCCC--ceeecccCCCCHHHHHHHHhcC
Q 006366 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTH--RVKSVSMSKFTSQEVEALQNGG 80 (648)
Q Consensus 3 srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGh--rVKSltLDkWt~eEVe~Lq~gG 80 (648)
+++++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+|.| +||||+||+|+.++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred cHHHHHHHhhcCCcccCCCCCCCch-HHHHHHHHHHHhcccccCCC
Q 006366 81 NQRAREIYLKDWDFQRQRLPDNSNV-NKVRDFIKNVYVDRRYAGGK 125 (648)
Q Consensus 81 N~~AN~iwea~~d~~r~~~P~~sd~-~~rreFIraKYveKrF~~~k 125 (648)
|.+||++||++++.. .++|...+. ..+++||++||++|+|+...
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCc
Confidence 999999999999865 445655544 45667999999999999763
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2.2e-31 Score=248.11 Aligned_cols=112 Identities=24% Similarity=0.472 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCcH
Q 006366 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (648)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLDkWt~eEVe~Lq~gGN~ 82 (648)
.++..+++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|+.++|++|+.+||.
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~ 98 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccH
Confidence 4566788889999999999999999999999999999999999999999999 5 999999999999999999999999
Q ss_pred HHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhcccc
Q 006366 83 RAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121 (648)
Q Consensus 83 ~AN~iwea~~d~~r~~~P~~sd~~~rreFIraKYveKrF 121 (648)
++|++||+++... |.....++++.||++||++|.-
T Consensus 99 ~an~~~e~~~~~~----~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 99 RARNYFKQVLGVN----FSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHTCTT----CCGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----CCCCHHHHHhhHHHHHHHHHHH
Confidence 9999999864321 3344567788899999998753
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=1.2e-30 Score=245.91 Aligned_cols=92 Identities=25% Similarity=0.589 Sum_probs=85.1
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC-C--ceeecccCC-CCHHHHHHH
Q 006366 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSK-FTSQEVEAL 76 (648)
Q Consensus 1 M~srke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLDk-Wt~eEVe~L 76 (648)
|... ..++++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| | +||||+||. |+.++|++|
T Consensus 8 m~~~-~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m 86 (149)
T 2crw_A 8 MGDP-SKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM 86 (149)
T ss_dssp SCCC-CHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH
T ss_pred cccC-CHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH
Confidence 4443 3457889999999999999999999999999999999999999999999999 4 999999995 999999999
Q ss_pred HhcCcHHHHHHHhhcCC
Q 006366 77 QNGGNQRAREIYLKDWD 93 (648)
Q Consensus 77 q~gGN~~AN~iwea~~d 93 (648)
+.+||.++|++||+++.
T Consensus 87 ~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 87 QVGGNASASSFFHQHGC 103 (149)
T ss_dssp HTTCHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHhcCC
Confidence 99999999999999875
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=242.48 Aligned_cols=114 Identities=29% Similarity=0.552 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCcH
Q 006366 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (648)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLDkWt~eEVe~Lq~gGN~ 82 (648)
.+++++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|+.++|+.|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 4678999999999999999999999999999999999999999999999998 3 999999999999999999999999
Q ss_pred HHHHHHhhcCCcccCCCCCCCch--------HHHHHHHHHHHhcccccC
Q 006366 83 RAREIYLKDWDFQRQRLPDNSNV--------NKVRDFIKNVYVDRRYAG 123 (648)
Q Consensus 83 ~AN~iwea~~d~~r~~~P~~sd~--------~~rreFIraKYveKrF~~ 123 (648)
++|+|||++.... |...-. ..+|+.|+++++.|.|..
T Consensus 101 ~an~~~ea~~~~~----~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYD----PCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCC----TTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCC----CCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999999874211 211112 234556666666666643
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=230.04 Aligned_cols=108 Identities=20% Similarity=0.510 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC---CceeecccCC-CCHHHHHHHHhcCc
Q 006366 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK-FTSQEVEALQNGGN 81 (648)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLDk-Wt~eEVe~Lq~gGN 81 (648)
-+++.+++|+.|++.|+|++|||||+++|+|+|+|||||||++|+||||+|| ++||||+||. |++++|++|+.+||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN 99 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCH
Confidence 3456788999999999999999999999999999999999999999999999 3999999996 99999999999999
Q ss_pred HHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhcc
Q 006366 82 QRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDR 119 (648)
Q Consensus 82 ~~AN~iwea~~d~~r~~~P~~sd~~~rreFIraKYveK 119 (648)
.++|++|+++... ...-.+++...+..+|.++
T Consensus 100 ~~an~~~e~~g~~------~~~~~~KY~s~aA~~Yr~~ 131 (144)
T 2p57_A 100 ANATAFFRQHGCT------ANDANTKYNSRAAQMYREK 131 (144)
T ss_dssp HHHHHHHHHTTCC------CCSHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCC------CCchhhccCcHHHHHHHHH
Confidence 9999999987422 1112233334556666554
No 10
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=244.23 Aligned_cols=120 Identities=26% Similarity=0.518 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCc
Q 006366 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (648)
Q Consensus 5 ke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLDkWt~eEVe~Lq~gGN 81 (648)
..++.++++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| | +|||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 46678899999999999999999999999999999999999999999999998 3 99999999999999999999999
Q ss_pred HHHHHHHhhcCCcccCCCCC-CCchHHHHHHHHHHHhcccccCC
Q 006366 82 QRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (648)
Q Consensus 82 ~~AN~iwea~~d~~r~~~P~-~sd~~~rreFIraKYveKrF~~~ 124 (648)
.++|++||+.++......|. .++...+++||++||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999765344453 45677888999999999999765
No 11
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=3.1e-28 Score=259.86 Aligned_cols=122 Identities=25% Similarity=0.494 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcC
Q 006366 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (648)
Q Consensus 4 rke~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLDkWt~eEVe~Lq~gG 80 (648)
++.+|.++++|+.|++.|+|+.|||||+++|+|+|+|+|||||++||||||+|| +||||++||.|+.+++++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999998 49999999999999999999999
Q ss_pred cHHHHHHHhhcCCcccCCCCCC-CchHHHHHHHHHHHhcccccCCC
Q 006366 81 NQRAREIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (648)
Q Consensus 81 N~~AN~iwea~~d~~r~~~P~~-sd~~~rreFIraKYveKrF~~~k 125 (648)
|..+|++||+.++....+.|.. ++...+++||++||++++|....
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999997655455543 45667888999999999998763
No 12
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.8e-28 Score=231.18 Aligned_cols=109 Identities=26% Similarity=0.471 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCc
Q 006366 6 EEERNEKIIRGLMKL-PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (648)
Q Consensus 6 e~ErnekiLr~Llk~-PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLDkWt~eEVe~Lq~gGN 81 (648)
+....+++|++|++. |+|++|||||+++|+|||++||||||++|+||||.|| | +||||+||.|+.++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567789999999996 8999999999999999999999999999999999999 3 99999999999999999999999
Q ss_pred HHHHHHHhhcCCcccCCCCCCCchHHHHHHHHHHHhccc
Q 006366 82 QRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120 (648)
Q Consensus 82 ~~AN~iwea~~d~~r~~~P~~sd~~~rreFIraKYveKr 120 (648)
.++|++|+++..... . -..++..-..++|+++.
T Consensus 84 ~~an~~~e~~g~~~~--~----p~~KY~s~aA~~Yr~~L 116 (163)
T 3sub_A 84 KKCQTYLENYGISDF--I----PERKYRTKAADHYRKIL 116 (163)
T ss_dssp HHHHHHHHHTTCTTS--C----HHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccc--C----hhhcCCCHHHHHHHHHH
Confidence 999999998643211 1 11233335666676654
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=1.1e-27 Score=238.44 Aligned_cols=118 Identities=30% Similarity=0.531 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcCcHHH
Q 006366 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRA 84 (648)
Q Consensus 8 ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLDkWt~eEVe~Lq~gGN~~A 84 (648)
|+++++|+.|++.|+|+.|+|||+.+|+|+|+|||+|||++|+||||+|| ++|||++||.|+.+++..|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999999 499999999999999999999999999
Q ss_pred HHHHhhcCCcccCCCCCC-CchHHHHHHHHHHHhcccccCCC
Q 006366 85 REIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (648)
Q Consensus 85 N~iwea~~d~~r~~~P~~-sd~~~rreFIraKYveKrF~~~k 125 (648)
|+|||+.++.....+|.. ++...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 999999987654434443 56677889999999999998764
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=8.9e-26 Score=231.83 Aligned_cols=88 Identities=32% Similarity=0.664 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCcH
Q 006366 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (648)
Q Consensus 6 e~ErnekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLDkWt~eEVe~Lq~gGN~ 82 (648)
..++++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||+|| | +||||+||+|+.++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 3578999999999999999999999999999999999999999999999998 3 899999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 006366 83 RAREIYLKDWD 93 (648)
Q Consensus 83 ~AN~iwea~~d 93 (648)
++|++||+.+.
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=81.78 E-value=1.8 Score=42.51 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=37.0
Q ss_pred CCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhcCCCceeecccCCCCHHHHHHHHhcCc
Q 006366 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGN 81 (648)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSltLDkWt~eEVe~Lq~gGN 81 (648)
|.-..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-+
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHh
Confidence 455799999998667889999999999996431 467888888865433
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=58.93 E-value=5 Score=31.02 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=30.0
Q ss_pred CCCCCcCCCCC-CCCeeEecceehhhhhhhhhhhcCC
Q 006366 22 PNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (648)
Q Consensus 22 gNk~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (648)
..+.|++|++. -|.|-.-..|..||-.|.-.++..|
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 56899999984 6889998899999999987766644
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=56.37 E-value=5.2 Score=30.46 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCCcCCCCC-CCCeeEecceehhhhhhhhhhhcCC
Q 006366 24 RRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (648)
Q Consensus 24 k~CADCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (648)
+.|++|+.. -|.|-.-..|-.||-.|.-..|.-|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 579999984 6799999999999999987655433
No 18
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=52.49 E-value=12 Score=35.13 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=21.6
Q ss_pred CCCCCCcCCCCCCCCe-eEecceehhhhhhhhhh
Q 006366 21 PPNRRCINCNSLGPQY-VCTNFWTFVCMTCSGIH 53 (648)
Q Consensus 21 PgNk~CADCGa~~P~W-aSvnfGVFVCi~CSGIH 53 (648)
..-..|.+||.+=|.= .-.--++-.|+.|...|
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 5568999999863211 01122677899999865
No 19
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=49.64 E-value=6.8 Score=32.14 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCCCCCcCCCC-CCCCeeEecceehhhhhhhhhhhcCC
Q 006366 20 LPPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (648)
Q Consensus 20 ~PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (648)
......|++|+. .-|.|=.-..|-.||-.|.-..+..+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 456789999998 46899999999999999987666544
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=48.02 E-value=8.5 Score=31.79 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCCCCCcCCCC-CCCCeeEecceehhhhhhhhhhhcCC
Q 006366 21 PPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (648)
Q Consensus 21 PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (648)
.....|++|+. .-|.|-.-.-|-.||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 35689999997 57899999899999999987666544
No 21
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=40.20 E-value=16 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecceehhhhhhhh
Q 006366 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSG 51 (648)
Q Consensus 10 nekiLr~L-lk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSG 51 (648)
.++.++++ ......-.|.-||...-.+.. .||+.|-.|--
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45566666 556788899999976655554 59999999963
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=40.04 E-value=14 Score=33.39 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=27.2
Q ss_pred CCCCcCCCC-CCCCeeEecceehhhhhhhhhhhc
Q 006366 23 NRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 23 Nk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
-+.|++||+ .-|.|-.-..|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 478999997 579999988999999999866543
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=33.28 E-value=8 Score=34.94 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCCCCcCCCCCCCCee-Eecceehhhhhhhhh
Q 006366 22 PNRRCINCNSLGPQYV-CTNFWTFVCMTCSGI 52 (648)
Q Consensus 22 gNk~CADCGa~~P~Wa-SvnfGVFVCi~CSGI 52 (648)
+...|.+||...-.+. .-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4568999998644443 569999999999865
No 24
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=30.41 E-value=6.9 Score=35.26 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.3
Q ss_pred CCCCcCCCCCCCCe-eEecceehhhhhhhhhh
Q 006366 23 NRRCINCNSLGPQY-VCTNFWTFVCMTCSGIH 53 (648)
Q Consensus 23 Nk~CADCGa~~P~W-aSvnfGVFVCi~CSGIH 53 (648)
-..|.+||.+=|.= .-.--++..|+.|...+
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 57999999863211 11222577899999764
No 25
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=30.30 E-value=20 Score=30.01 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=26.3
Q ss_pred CCCCCcCCCC-CCCCeeE--ecceehhhhhhhhhhhcC
Q 006366 22 PNRRCINCNS-LGPQYVC--TNFWTFVCMTCSGIHREF 56 (648)
Q Consensus 22 gNk~CADCGa-~~P~WaS--vnfGVFVCi~CSGIHR~L 56 (648)
....|++|+. .-|.|-. -.-| .||-.|.-.+|..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 4579999998 4689998 6777 7999998666553
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=27.48 E-value=23 Score=30.32 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
|++.|.=||... ....|||+.|..|.+.-|-
T Consensus 1 g~~~C~VCg~~a---~g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEA---SGCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcC---cccccCCccchhHhHHhhh
Confidence 578899999754 2478999999999998663
No 27
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=25.50 E-value=25 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.670 Sum_probs=26.0
Q ss_pred CCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
.+....|.=||... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678999999743 3589999999999998875
No 28
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=25.30 E-value=22 Score=32.57 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHhcCcHHHHHHHhhcC
Q 006366 67 KFTSQEVEALQNGGNQRAREIYLKDW 92 (648)
Q Consensus 67 kWt~eEVe~Lq~gGN~~AN~iwea~~ 92 (648)
.|+++|+++|+..++..+-.+-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999988876654
No 29
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=25.03 E-value=30 Score=36.84 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
.+..|.=||...-- ..|||..|..|.+..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 46789999986543 58999999999998764
No 30
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=25.01 E-value=31 Score=31.17 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
.+..|.=||... ....|||+.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999754 3589999999999998775
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=24.51 E-value=24 Score=36.66 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCCcCCCCCCCCee-Eecceehhhhhhhhhhh
Q 006366 24 RRCINCNSLGPQYV-CTNFWTFVCMTCSGIHR 54 (648)
Q Consensus 24 k~CADCGa~~P~Wa-SvnfGVFVCi~CSGIHR 54 (648)
..|-+||...|.-+ ...-|-.||..|.-|..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 47999999754322 34569999999987753
No 32
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.29 E-value=26 Score=33.02 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=25.5
Q ss_pred CCCCCcCCCCC-----CCCeeEecceehhhhhhhhhhhc
Q 006366 22 PNRRCINCNSL-----GPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 22 gNk~CADCGa~-----~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
+...|+-|+.+ +.--.|..=...||..|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 56899999985 55556666677889988876654
No 33
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=23.74 E-value=29 Score=29.87 Aligned_cols=32 Identities=16% Similarity=0.568 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 21 PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
+.+..|.=||.... ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997543 468999999999998775
No 34
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=23.61 E-value=34 Score=29.08 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
+...|.=||... ....||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 467899999754 3579999999999998875
No 35
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=22.67 E-value=27 Score=30.81 Aligned_cols=29 Identities=21% Similarity=0.636 Sum_probs=23.5
Q ss_pred CCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 24 k~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
..|.=||... ....|||+.|..|++..|-
T Consensus 2 ~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 5799999754 2478999999999998764
No 36
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=21.30 E-value=43 Score=29.62 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCe-eEecceehhhhhhhh
Q 006366 9 RNEKIIRGLMKLPPNRRCINCNSLGPQY-VCTNFWTFVCMTCSG 51 (648)
Q Consensus 9 rnekiLr~Llk~PgNk~CADCGa~~P~W-aSvnfGVFVCi~CSG 51 (648)
+.+.+|.+|- ...-..|.+||.+=|.= .-.--++-.|+.|..
T Consensus 68 ~i~~Al~ri~-~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 68 AIDAALARIA-SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HHHHHHHHHH-HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred HHHHHHHhhh-CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 3444454543 35668999999752210 011125678999975
No 37
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=21.15 E-value=37 Score=29.44 Aligned_cols=31 Identities=16% Similarity=0.552 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 22 gNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
....|.=||... ....||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 457899999754 2579999999999998765
No 38
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=21.03 E-value=31 Score=31.01 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCCCCCcCCCCCCCCeeEecceehhhhhhhhhhhc
Q 006366 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (648)
Q Consensus 20 ~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (648)
.+.+..|.=||... ....|||+.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999653 3589999999999998775
No 39
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.95 E-value=55 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCCCCCcCCCC-CCCCeeEecceehhhhhhhhhhhcCC
Q 006366 21 PPNRRCINCNS-LGPQYVCTNFWTFVCMTCSGIHREFT 57 (648)
Q Consensus 21 PgNk~CADCGa-~~P~WaSvnfGVFVCi~CSGIHR~LG 57 (648)
.....|++|+. .-|.|-.-..|-.||-.|.-..+..+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~ 94 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 94 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhC
Confidence 45689999997 56999999999999999987666544
Done!