BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006368
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/581 (37%), Positives = 322/581 (55%), Gaps = 48/581 (8%)
Query: 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+++
Sbjct: 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEG 64
Query: 85 CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144
SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++ +Q
Sbjct: 65 RSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQ 124
Query: 145 PYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC+ K FL DR V GTCP+ C E +GDQCE CG+ L L +P+C +C
Sbjct: 125 AYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISF 182
Query: 205 RDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVP 264
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL WG+P
Sbjct: 183 RDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGIP 238
Query: 265 VPL--ERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFMGKD 315
VPL E K KV YVWF+APIGY+SIT + NEW+++W N + + F+GKD
Sbjct: 239 VPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKD 298
Query: 316 NVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDA 367
N+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++ ++
Sbjct: 299 NIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEF 358
Query: 368 KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427
D P + RYYL T PE D+ F+++D + + N EL+NNLGNF++R L+F+ +
Sbjct: 359 LDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFV----NR 413
Query: 428 GYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487
+ +VP+ E +L + E++ K ++ E + + K LK MS++S GN Y
Sbjct: 414 YFDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFD 471
Query: 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
Q WK KED+ + S+ +V L LLEPF+P S ++ LNL
Sbjct: 472 HKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL---------- 521
Query: 548 EKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFF 586
D +R WE +PAGHK+ P LFK++ DD++ +F
Sbjct: 522 -----DEVKR-WEFRELPAGHKVRKPEILFKKVTDDQIIYF 556
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 247/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 238 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 296 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 354 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 413
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 414 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 460
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 461 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 509
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 247/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 238 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 296 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 354 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 413
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 414 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 460
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 461 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 509
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 247/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 6 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 64
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 65 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 124
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 125 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 182
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 183 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 238
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 239 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 296
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 297 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 354
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 355 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 414
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 415 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 461
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 462 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 510
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/526 (27%), Positives = 245/526 (46%), Gaps = 30/526 (5%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 238 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 296 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K + G +
Sbjct: 354 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLAS 410
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
+ ++ AE +G EA E + + ++ M+++ N Y+ E W +
Sbjct: 411 ELADPALYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWVV 463
Query: 495 YKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
K+ + S+G L +L L+P +P + LN +
Sbjct: 464 AKQAGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 509
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 244/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T A PY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 18 KKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 76
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 77 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 136
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 137 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 194
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 195 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 250
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIG + ++ ++++WK ELY F+GK
Sbjct: 251 FGFEIP--NAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 308
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V F ++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 309 DIVYFLSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 366
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 367 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 426
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 427 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 473
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 474 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 522
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 234/513 (45%), Gaps = 68/513 (13%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ +T+ + YVN+VPHLG+ ++ +AD AR+ RLR Y+ ++ GTDE+G + KA
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTI-AADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
E SPKE+ D+ K ++++ I + F RT+ P + Q +F++ +
Sbjct: 64 ELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123
Query: 142 MQQPYCDTCKRFL--ADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC C+ F A+ + TCP +CE +K+P
Sbjct: 124 YEGWYCVGCEEFKSEAELAEDHTCPI--------HQKKCEY---------IKEPSY---- 162
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITR 257
F L ++KL E N + + +N I + ++K+GLK +TR
Sbjct: 163 -----------FFRLSKYQDKLLELYEKNPEFIQPDYRRNEIIS---FVKQGLKDLSVTR 208
Query: 258 ---DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGK 314
+KWG+PVP + E YVWFDA Y+S ++ E +W P ++ L +GK
Sbjct: 209 PRSRVKWGIPVPFD--PEHTIYVWFDALFNYIS---ALEDKVEIYW--PADLHL---VGK 258
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D + FHTV +P+ L+ G + L K + + E K SK+ G V +
Sbjct: 259 DILRFHTVYWPAFLMSLG--YELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLD 316
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
EV RY+LL P D F+ + + N EL N +GN +RV++ K G
Sbjct: 317 EV-RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGG------- 368
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
+ +GA + K E + Y E Y MEKV + ++ + +S N Y+ E Q W L
Sbjct: 369 EVSGARDEEYAKIAQESIKNY-ENY---MEKVNFYKAIEEILKFTSYLNKYVDEKQPWAL 424
Query: 495 YKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPS 526
KE + V+ V + +L LL P P+
Sbjct: 425 NKERKKEELQKVLYALVDGLFVLTHLLYPITPN 457
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 140/542 (25%), Positives = 222/542 (40%), Gaps = 83/542 (15%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
PK D+ K + I++D+F RT+ + + Q + KK+ + + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 146 YCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC +C+RF ++ LVEG CP G E
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVER-------------------------------- 153
Query: 205 RDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG 262
R + F + R L+EYI N + +N + A A L + + WG
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWG 213
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSIT-----SCYTNEWEQWWKNPENVELYQFMGKDNV 317
+P+P + + V YVWFDA + YVS Y W W +GKD +
Sbjct: 214 IPLPWD--ENHVTYVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGKDIL 262
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGV--------FGNDAK 368
H V +P+ L G + + ++V +L G K SK+ G V +G DA
Sbjct: 263 KPHAVFWPTMLKAAG--IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA- 319
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
RYYLL P DT + L+ + +L ++LGN + R + + +
Sbjct: 320 --------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FA 368
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
G I G E LAE G + + ++K L+ AM+ N Y+ E
Sbjct: 369 EGRIPEPVAGEE-------LAEGTG-LAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
+ W+L+K++ V+ V + + + LL P MP E+ + L L+ E + +
Sbjct: 421 KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 549 KG 550
G
Sbjct: 481 WG 482
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 139/542 (25%), Positives = 222/542 (40%), Gaps = 83/542 (15%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
PK D+ K + I++D+F RT+ + + Q + KK+ + + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 146 YCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC +C+RF ++ LVEG CP G E
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVER-------------------------------- 153
Query: 205 RDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG 262
R + F + R L+EYI N + +N + A A L + + WG
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWG 213
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSIT-----SCYTNEWEQWWKNPENVELYQFMGKDNV 317
+P+P + + V +VWFDA + YVS Y W W +GKD +
Sbjct: 214 IPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGKDIL 262
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGV--------FGNDAK 368
H V +P+ L G + + ++V +L G K SK+ G V +G DA
Sbjct: 263 KPHAVFWPTMLKAAG--IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA- 319
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
RYYLL P DT + L+ + +L ++LGN + R + + +
Sbjct: 320 --------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FA 368
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
G I G E LAE G + + ++K L+ AM+ N Y+ E
Sbjct: 369 EGRIPEPVAGEE-------LAEGTG-LAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
+ W+L+K++ V+ V + + + LL P MP E+ + L L+ E + +
Sbjct: 421 KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 549 KG 550
G
Sbjct: 481 WG 482
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 139/542 (25%), Positives = 221/542 (40%), Gaps = 83/542 (15%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
PK D+ K + I++D+F RT+ + + Q + KK+ + + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 146 YCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC +C+RF ++ LVEG CP G E
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVER-------------------------------- 153
Query: 205 RDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG 262
R + F + R L+EYI N + +N + A A L + + WG
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWG 213
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSIT-----SCYTNEWEQWWKNPENVELYQFMGKDNV 317
+P+P + + V VWFDA + YVS Y W W +GKD +
Sbjct: 214 IPLPWD--ENHVTAVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGKDIL 262
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGV--------FGNDAK 368
H V +P+ L G + + ++V +L G K SK+ G V +G DA
Sbjct: 263 KPHAVFWPTMLKAAG--IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA- 319
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
RYYLL P DT + L+ + +L ++LGN + R + + +
Sbjct: 320 --------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FA 368
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
G I G E LAE G + + ++K L+ AM+ N Y+ E
Sbjct: 369 EGRIPEPVAGEE-------LAEGTG-LAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
+ W+L+K++ V+ V + + + LL P MP E+ + L L+ E + +
Sbjct: 421 KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 549 KG 550
G
Sbjct: 481 WG 482
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 151/573 (26%), Positives = 238/573 (41%), Gaps = 69/573 (12%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G IT+A+ Y N VPH+G+ ++ D ARF RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAY-EYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A ++ E+ + + + + + +ISFD F RTS EA +AI+K++ D +
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC---ENCGKLLNATDLKDPKCK 196
+ + Y +RF + E T +G + G E + D
Sbjct: 129 DAYKGWYSIRDERFFTEN--ETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLA 186
Query: 197 VCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256
+ P+ F+ A RN++ +++ GLK I+
Sbjct: 187 LYEEHPE-------FIGPDARRNEIVSFVSG---------------------GLKDLSIS 218
Query: 257 RD-LKWGVPVPLERFKEKVFYVWFDAPIGY---VSITSCYTNEWEQWWKNPENVELYQFM 312
R WGVPVP + V YVW DA Y V + + ++W P ++ + +
Sbjct: 219 RTTFDWGVPVP--DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADLHM---I 271
Query: 313 GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNI 372
GKD + FHTV +P+ L+ G L K I +L K SKS G V + DT
Sbjct: 272 GKDIIRFHTVYWPAFLMSAG--LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT-F 328
Query: 373 PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI 432
++ RY+LL P D + + + N +L N LGN R LS +AK G+
Sbjct: 329 GLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAK----NLGAA 384
Query: 433 VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFW 492
VPD E L +E+ E + + L+ S+ N Y + W
Sbjct: 385 VPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPW 442
Query: 493 KLYK----EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
L K EDQ V+ T++ +V + + LL+P MP + ++ L QP DE
Sbjct: 443 VLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLG-QP------TDE 495
Query: 549 KGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
+ A R I G + +P+ +F ++D
Sbjct: 496 RDFSAIANR----IKPGTSLPAPSGIFPRYQND 524
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 135/553 (24%), Positives = 238/553 (43%), Gaps = 58/553 (10%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
IT+A+ Y N PH+G+ +++ D ARF RL G + ++ GTDE+G A ++
Sbjct: 29 ITTAIAYPNGKPHIGHAY-ELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGI 87
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
+P+++ D+ + + + + S D++ RTS + +A QAI++ ++ N + +
Sbjct: 88 TPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGW 147
Query: 146 YCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIR 205
Y + + + E +G Y +G E
Sbjct: 148 YSVRDEAYYGEEETEVRA--DGVRY-GPQGTPVEWV------------------------ 180
Query: 206 DTNHLFLDLPALRNKLEE-YINNMS-VAGSWSQNAIQATHAWLKEGLKVRCITRD-LKWG 262
+ F L A ++KL + Y NN + + +N I + ++K GLK I+R WG
Sbjct: 181 EEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVS---FVKSGLKDLSISRTTFDWG 237
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTV 322
+PVP + ++ V YVW DA Y++ E+W P N + +GKD FH V
Sbjct: 238 IPVPGD--EKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHI---IGKDISRFHAV 292
Query: 323 MFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLL 382
+P+ L+ L K + +L K SKS G V ++ RY+L+
Sbjct: 293 YWPAFLMSA--QLPLPKRVFAHGFLFNRGEKMSKSVG-NVIDPFELVERYGLDQLRYFLM 349
Query: 383 TNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESH 442
P D ++ + ++N +L N+LGN R LS IAK VP GA S
Sbjct: 350 REVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAK----NCEGKVPQP-GAFS- 403
Query: 443 QLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSC 502
+ K + ++ +E +AM+ L L ++ +E N Y + W L K D
Sbjct: 404 EADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARM 463
Query: 503 SIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEII 562
V+ + ++ + +++PF+P + ++ L + D++ D P +
Sbjct: 464 GTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP-------ADKRQFADVLASP---L 513
Query: 563 PAGHKIGSPNPLF 575
G + +P P+F
Sbjct: 514 AGGTDLPAPQPVF 526
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 210/539 (38%), Gaps = 60/539 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +TS + YVN PH+G++ S L DV R+ R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ D S D F RT+ Q + ++ KL +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ Y + + FL + + + D CKV
Sbjct: 127 RYEGWYSISDESFLTPQ-------------------------NITDGVDKDGNPCKVSLE 161
Query: 201 APQI----RDTNHLFLDLPALRNKLEEYINNMS---VAGSWSQNAIQATHAWLKEGLKVR 253
+ + + N++F L A R +L E+ + V + I+A L + R
Sbjct: 162 SGHVVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSR 220
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----------WEQWWKNP 303
W +PVP + YVW DA Y++ + +E + + + P
Sbjct: 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 304 ENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVF 363
+V + +GKD + FH + +P+ LL G L K I + + K SKS G VF
Sbjct: 279 ADVHV---IGKDILKFHAIYWPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLG-NVF 332
Query: 364 GNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423
K + +Y+LL D ++ ++ A+ N EL + LGN + R S
Sbjct: 333 DPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN 392
Query: 424 PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483
G+ P A E L + + + G YL +++ + + N
Sbjct: 393 VNGEWPS---PAAYTEEDESLIQLIKDLPGTADHYYLIP----DIQKAIIAVFDVLRAIN 445
Query: 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
AY+ + WKL K D V+ ++ V + LL P +P SV + L + PE H
Sbjct: 446 AYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV-PEVH 503
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 210/539 (38%), Gaps = 60/539 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +TS + YVN PH+G++ S L DV R+ R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ D S D F RT+ Q + ++ KL +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ Y + + FL + + + D CKV
Sbjct: 127 RYEGWYSISDESFLTPQ-------------------------NITDGVDKDGNPCKVSLE 161
Query: 201 APQI----RDTNHLFLDLPALRNKLEEYIN---NMSVAGSWSQNAIQATHAWLKEGLKVR 253
+ + + N++F L A R +L E+ + V + I+A L + R
Sbjct: 162 SGHVVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSR 220
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----------WEQWWKNP 303
W +PVP + YVW DA Y++ + +E + + + P
Sbjct: 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 304 ENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVF 363
+V + +GKD + FH + +P+ LL G L K I + + K SKS G VF
Sbjct: 279 ADVHV---IGKDILKFHAIYWPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLG-NVF 332
Query: 364 GNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423
K + +Y+LL D ++ ++ A+ N EL + LGN + R S
Sbjct: 333 DPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN 392
Query: 424 PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483
G+ P A E L + + + G YL +++ + + N
Sbjct: 393 VNGEWPS---PAAYTEEDESLIQLIKDLPGTADHYYLIP----DIQKAIIAVFDVLRAIN 445
Query: 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
AY+ + WKL K D V+ ++ V + LL P +P SV + L + PE H
Sbjct: 446 AYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV-PEVH 503
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 210/539 (38%), Gaps = 60/539 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +TS + YVN PH+G++ S L DV R+ R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ D S D F RT+ Q + ++ KL +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ Y + + FL + + + D CKV
Sbjct: 127 RYEGWYSISDESFLTPQ-------------------------NITDGVDKDGNPCKVSLE 161
Query: 201 APQI----RDTNHLFLDLPALRNKLEEYIN---NMSVAGSWSQNAIQATHAWLKEGLKVR 253
+ + + N++F L A R +L E+ + V + I+A L + R
Sbjct: 162 SGHVVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSR 220
Query: 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----------WEQWWKNP 303
W +PVP + YVW DA Y++ + +E + + + P
Sbjct: 221 ARATLHNWAIPVPGN--PDHCVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 304 ENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVF 363
+V + +GKD + FH + +P+ LL G L K I + + K SKS G VF
Sbjct: 279 ADVHV---IGKDILKFHAIYWPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLG-NVF 332
Query: 364 GNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423
K + +Y+LL D ++ ++ A+ N EL + LGN + R S
Sbjct: 333 DPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN 392
Query: 424 PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483
G+ P A E L + + + G YL +++ + + N
Sbjct: 393 VNGEWPS---PAAYTEEDESLIQLIKDLPGTADHYYLIP----DIQKAIIAVFDVLRAIN 445
Query: 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
AY+ + WKL K D V+ ++ V + LL P +P SV + L + PE H
Sbjct: 446 AYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV-PEVH 503
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 119/544 (21%), Positives = 219/544 (40%), Gaps = 64/544 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ T+ + YVN PH+G++ S L DV R+ R++G + GTDE+G A
Sbjct: 25 QKVFFATTPIYYVNASPHIGHVY-STLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAA 83
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ + + F RT+ P + Q I+KKL +
Sbjct: 84 AKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ Y + + FL + V D + GK CKV
Sbjct: 144 KYEGWYSVSDESFLTAQNV---------------ADGVDRDGK----------PCKVSLE 178
Query: 201 APQI----RDTNHLFLDLPALRNKLEEYINNMS--VAGSWSQNAIQATHAWLKEGLKVRC 254
+ + + N++F L A R +L +Y ++ + + + + T +++GL
Sbjct: 179 SGHVVTWVEEENYMF-RLSAFRERLLKYFHDHPNCIVPEFRRREVIKT---VEKGLFDLS 234
Query: 255 ITRD----LKWGVPVPLERFKEKVFYVWFDAPIGYVS--ITSCYTNEWEQWWKN------ 302
I+R + W +PVP + + YVW DA Y + +T T+ E ++
Sbjct: 235 ISRKRESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNR 292
Query: 303 -PENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIG 361
P +V + +GKD + FH + +P+ L+ L + + + + K SKS G
Sbjct: 293 WPADVHV---VGKDILKFHAIYWPAFLMSA--ELPLPERLVSHGWWTKDHKKISKSLG-N 346
Query: 362 VFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421
F K ++ +Y+L+ D ++ ++ A+ N EL + LGN ++R ++
Sbjct: 347 AFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVA-- 404
Query: 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481
P + P+ AE + KTL + ++ L +
Sbjct: 405 ---PKINVNGMWPEP--AEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRS 459
Query: 482 GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEK 541
NAY+ E+ WKL K D V+ ++ + + L+P MP + E+ L +
Sbjct: 460 LNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAA 519
Query: 542 HISL 545
+ +
Sbjct: 520 RVGM 523
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
GK+ +L+ PY + H+G++ + DV ARF R++GY ++ G D +G E
Sbjct: 33 GKQYVLVM--FPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST--PQQTEACQAIFKKLLDNNWL 137
A++ PK+ K+ + I +D +T P+ Q IF K+ +
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 138 IENTMQQPYCDTCKRFLA-DRLVEGTC 163
+C C+ LA +++VEG C
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
GK+ +L+ PY + H+G++ + DV ARF R++GY ++ G D +G E
Sbjct: 33 GKQYVLVM--FPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST--PQQTEACQAIFKKLLDNNWL 137
A++ PK+ K+ + I +D +T P+ Q IF K+ +
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 138 IENTMQQPYCDTCKRFLA-DRLVEGTC 163
+C C+ LA +++VEG C
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----ICGTDEYGTA 75
++ IT A PY++ H+G+ + DV ARF R++GYN ++ I G+ G A
Sbjct: 33 EKKFYITVAFPYLSGHLHVGHARTYTIP-DVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 76 TETKAMEDNCSPKEICDKYHVIHKDVYK 103
K N PK I I++DVYK
Sbjct: 92 ERIK----NRDPKTIW-----IYRDVYK 110
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----ICGTDEYGTA 75
++ IT A PY++ H+G+ + DV ARF R++GYN ++ I G+ G A
Sbjct: 33 EKKFYITVAFPYLSGHLHVGHARTYTIP-DVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 76 TETKAMEDNCSPKEICDKYHVIHKDVYK 103
K N PK I I++DVYK
Sbjct: 92 ERIK----NRDPKTIW-----IYRDVYK 110
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
Length = 862
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
GK +I P V H+G+ + + L D R+ R+RG+ A+++ GTD G AT+
Sbjct: 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQ-DALIRYKRMRGFEAVWLPGTDHAGIATQV 89
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 24/141 (17%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC--SPK 88
P N +PH+G+ D+F R+ +RGY A G D +G E + + S +
Sbjct: 47 PTANGLPHVGHAQARSYK-DLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKR 105
Query: 89 EI-----------C--------DKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFK 129
EI C ++ + + W D+ D + T P E+ K
Sbjct: 106 EIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLE-DAYA-TLEPTYIESIWWSLK 163
Query: 130 KLLDNNWLIENTMQQPYCDTC 150
L D L + PYC C
Sbjct: 164 NLFDRGLLYRDHKVVPYCPRC 184
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G ++ PY N H+G+ + +L D R+ ++G+ A Y+ G D +G E
Sbjct: 46 GNETFILHDGPPYANGNLHMGHALNKILK-DFIVRYKTMQGFYAPYVPGWDTHGLPIEQA 104
Query: 80 AMEDNCSPKEIC 91
+ K++
Sbjct: 105 LTKKGVDRKKMS 116
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 470 QGLKTAMSISSEGNAYLQESQFWK--LYKEDQPSCSIVMRTSVGLVHLL--ACLL----- 520
Q L +++ SE Y++E WK Y ++P C ++ + +GL+ LL ACL+
Sbjct: 411 QQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTD 470
Query: 521 EPFMPSFSVEVNKQLNLQ 538
+ F+ S + K +LQ
Sbjct: 471 QTFLDSICKQFEKNPHLQ 488
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 470 QGLKTAMSISSEGNAYLQESQFWK--LYKEDQPSCSIVMRTSVGLVHLL--ACLL----- 520
Q L +++ SE Y++E WK Y ++P C ++ + +GL+ LL ACL+
Sbjct: 411 QQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTD 470
Query: 521 EPFMPSFSVEVNKQLNLQ 538
+ F+ S + K +LQ
Sbjct: 471 QTFLDSICKQFEKNPHLQ 488
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 543 ISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKD 580
I C V PW+I P G+++G+ PLF E D
Sbjct: 357 IQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWND 394
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 392 LFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEK 451
+ TWA L L N+ + N +LSFI K +G+ I P A ++ A++
Sbjct: 129 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGF--ISPT---AREIIVSAPTAKE 183
Query: 452 VGKYVEQYLEAMEKVKLK 469
+ K +E+Y E+V K
Sbjct: 184 LVKKLEEYAPCHERVATK 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,001,405
Number of Sequences: 62578
Number of extensions: 883256
Number of successful extensions: 2200
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2080
Number of HSP's gapped (non-prelim): 45
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)