Query 006368
Match_columns 648
No_of_seqs 331 out of 2396
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 22:16:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02610 probable methionyl-tR 100.0 1E-139 2E-144 1197.2 60.0 631 14-646 9-684 (801)
2 COG0143 MetG Methionyl-tRNA sy 100.0 5E-139 1E-143 1133.6 54.3 546 20-590 3-556 (558)
3 PRK00133 metG methionyl-tRNA s 100.0 7E-122 1E-126 1049.5 55.3 584 22-641 2-612 (673)
4 KOG1247 Methionyl-tRNA synthet 100.0 1E-122 3E-127 924.7 29.8 565 10-595 2-566 (567)
5 PRK12267 methionyl-tRNA synthe 100.0 2E-113 4E-118 979.4 53.0 561 21-641 3-588 (648)
6 PLN02224 methionine-tRNA ligas 100.0 8E-111 2E-115 933.7 52.1 509 21-586 68-588 (616)
7 TIGR00398 metG methionyl-tRNA 100.0 7E-110 1E-114 933.4 54.1 525 24-579 1-530 (530)
8 PRK12268 methionyl-tRNA synthe 100.0 8E-110 2E-114 937.9 55.0 548 21-593 2-555 (556)
9 KOG0436 Methionyl-tRNA synthet 100.0 4E-110 9E-115 836.5 38.5 480 20-542 37-532 (578)
10 PF09334 tRNA-synt_1g: tRNA sy 100.0 1E-104 2E-109 849.4 24.8 385 24-418 1-391 (391)
11 PRK11893 methionyl-tRNA synthe 100.0 3E-96 7E-101 822.0 52.0 502 22-580 1-510 (511)
12 TIGR00422 valS valyl-tRNA synt 100.0 1.3E-83 2.9E-88 754.4 45.0 504 11-537 20-700 (861)
13 PRK13208 valS valyl-tRNA synth 100.0 3.2E-81 7E-86 729.1 46.1 493 20-536 36-705 (800)
14 PRK14900 valS valyl-tRNA synth 100.0 2.2E-80 4.8E-85 731.2 46.2 494 20-537 46-715 (1052)
15 PRK05729 valS valyl-tRNA synth 100.0 1.4E-78 2.9E-83 711.4 43.9 489 21-537 35-693 (874)
16 PLN02943 aminoacyl-tRNA ligase 100.0 1E-76 2.2E-81 695.7 47.1 498 20-537 86-771 (958)
17 cd00814 MetRS_core catalytic c 100.0 1.2E-77 2.6E-82 629.5 31.1 316 23-393 1-319 (319)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 4.2E-76 9.1E-81 691.8 44.1 493 19-537 33-791 (861)
19 PLN02882 aminoacyl-tRNA ligase 100.0 4.1E-75 8.9E-80 688.5 47.4 498 19-537 35-801 (1159)
20 PRK06039 ileS isoleucyl-tRNA s 100.0 4.4E-75 9.5E-80 685.9 44.5 497 19-537 38-772 (975)
21 PRK05743 ileS isoleucyl-tRNA s 100.0 3.6E-75 7.9E-80 681.5 43.1 492 19-536 46-769 (912)
22 PTZ00419 valyl-tRNA synthetase 100.0 1.6E-73 3.5E-78 675.6 45.6 500 19-537 57-805 (995)
23 cd00817 ValRS_core catalytic c 100.0 1.7E-74 3.7E-79 618.2 30.5 326 22-393 1-382 (382)
24 TIGR00395 leuS_arch leucyl-tRN 100.0 1.4E-72 3E-77 661.5 44.0 491 9-537 11-778 (938)
25 PRK13804 ileS isoleucyl-tRNA s 100.0 4.4E-72 9.6E-77 656.7 45.4 493 19-537 51-808 (961)
26 PLN02843 isoleucyl-tRNA synthe 100.0 3.4E-71 7.3E-76 649.0 47.2 490 21-537 31-797 (974)
27 COG0525 ValS Valyl-tRNA synthe 100.0 5.4E-71 1.2E-75 615.3 42.9 507 9-537 18-699 (877)
28 PLN02381 valyl-tRNA synthetase 100.0 1.7E-70 3.7E-75 645.9 46.2 507 12-536 116-871 (1066)
29 PTZ00427 isoleucine-tRNA ligas 100.0 2.8E-69 6E-74 636.1 46.4 503 20-537 100-906 (1205)
30 COG0060 IleS Isoleucyl-tRNA sy 100.0 5.2E-69 1.1E-73 606.7 43.4 497 18-538 45-781 (933)
31 PRK00390 leuS leucyl-tRNA synt 100.0 1.1E-67 2.5E-72 611.2 41.3 443 22-537 32-723 (805)
32 TIGR00396 leuS_bact leucyl-tRN 100.0 2E-67 4.4E-72 610.0 41.5 450 19-537 26-759 (842)
33 PLN02563 aminoacyl-tRNA ligase 100.0 1E-66 2.2E-71 604.5 37.9 450 19-537 107-875 (963)
34 cd00818 IleRS_core catalytic c 100.0 2.7E-67 5.8E-72 553.7 27.9 303 22-393 1-338 (338)
35 PRK12300 leuS leucyl-tRNA synt 100.0 9.6E-65 2.1E-69 592.9 39.6 461 37-538 1-733 (897)
36 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.3E-64 2.9E-69 530.2 28.2 293 23-393 1-312 (312)
37 cd00812 LeuRS_core catalytic c 100.0 1.3E-64 2.7E-69 529.0 25.6 293 23-395 1-314 (314)
38 PTZ00399 cysteinyl-tRNA-synthe 100.0 9.2E-63 2E-67 552.7 36.1 497 7-618 45-592 (651)
39 PLN02959 aminoacyl-tRNA ligase 100.0 5.2E-60 1.1E-64 558.8 43.8 479 21-535 44-877 (1084)
40 COG0495 LeuS Leucyl-tRNA synth 100.0 4.1E-60 8.8E-65 530.8 34.8 458 9-537 18-733 (814)
41 KOG2007 Cysteinyl-tRNA synthet 100.0 4.9E-56 1.1E-60 456.9 29.0 492 7-618 40-565 (586)
42 PF00133 tRNA-synt_1: tRNA syn 100.0 2.5E-56 5.5E-61 503.9 25.9 363 19-394 20-601 (601)
43 KOG0433 Isoleucyl-tRNA synthet 100.0 1.2E-53 2.6E-58 454.5 39.4 484 21-538 58-798 (937)
44 KOG0432 Valyl-tRNA synthetase 100.0 1.5E-53 3.2E-58 462.9 35.9 496 21-536 74-807 (995)
45 PRK14536 cysS cysteinyl-tRNA s 100.0 1.2E-53 2.6E-58 461.0 31.8 382 7-484 8-404 (490)
46 PLN02946 cysteine-tRNA ligase 100.0 1.9E-53 4.2E-58 463.3 29.5 376 7-488 65-444 (557)
47 PRK00260 cysS cysteinyl-tRNA s 100.0 7.3E-52 1.6E-56 452.9 34.2 364 7-488 8-376 (463)
48 KOG0435 Leucyl-tRNA synthetase 100.0 2.2E-52 4.7E-57 441.2 28.5 459 19-538 55-782 (876)
49 PRK14534 cysS cysteinyl-tRNA s 100.0 3.1E-52 6.8E-57 447.4 30.1 377 7-485 8-398 (481)
50 TIGR00435 cysS cysteinyl-tRNA 100.0 7.8E-52 1.7E-56 451.4 33.2 362 7-483 6-375 (465)
51 TIGR03447 mycothiol_MshC cyste 100.0 3.1E-52 6.8E-57 439.2 25.7 357 7-484 23-387 (411)
52 PRK12418 cysteinyl-tRNA synthe 100.0 4.2E-51 9.1E-56 429.2 27.4 350 21-489 9-365 (384)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 8.4E-51 1.8E-55 443.5 30.1 363 7-485 233-613 (699)
54 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.6E-50 3.4E-55 424.1 29.4 366 7-488 7-377 (464)
55 KOG0434 Isoleucyl-tRNA synthet 100.0 3.4E-49 7.4E-54 416.2 29.4 499 18-537 34-785 (1070)
56 PF01406 tRNA-synt_1e: tRNA sy 100.0 4.1E-44 9E-49 358.9 15.3 293 15-402 1-299 (300)
57 cd00672 CysRS_core catalytic c 100.0 1.8E-40 4E-45 325.1 19.1 207 7-394 5-213 (213)
58 PRK01611 argS arginyl-tRNA syn 100.0 1.1E-35 2.3E-40 330.1 29.5 338 20-489 109-468 (507)
59 KOG0437 Leucyl-tRNA synthetase 100.0 6.8E-35 1.5E-39 310.7 31.7 477 19-538 41-871 (1080)
60 cd00674 LysRS_core_class_I cat 100.0 1E-34 2.3E-39 302.5 19.5 270 22-397 19-318 (353)
61 TIGR00456 argS arginyl-tRNA sy 100.0 2.8E-32 6E-37 306.1 31.4 345 21-499 111-534 (566)
62 PRK00750 lysK lysyl-tRNA synth 100.0 5.6E-32 1.2E-36 298.0 14.5 268 23-395 24-321 (510)
63 PRK12451 arginyl-tRNA syntheta 100.0 2.4E-26 5.3E-31 257.1 34.1 338 21-490 112-525 (562)
64 COG0018 ArgS Arginyl-tRNA synt 99.9 8.8E-26 1.9E-30 249.1 30.1 341 21-490 116-538 (577)
65 TIGR00467 lysS_arch lysyl-tRNA 99.9 1.2E-27 2.7E-32 261.3 13.7 256 22-398 18-317 (515)
66 cd00671 ArgRS_core catalytic c 99.9 1.8E-25 3.8E-30 220.8 19.5 124 23-150 1-124 (212)
67 PLN02286 arginine-tRNA ligase 99.9 3E-23 6.5E-28 232.4 32.9 340 20-490 115-540 (576)
68 cd00802 class_I_aaRS_core cata 99.8 5.3E-19 1.2E-23 163.9 14.4 77 26-103 1-77 (143)
69 PF01921 tRNA-synt_1f: tRNA sy 99.8 1.2E-20 2.6E-25 194.6 0.8 259 20-396 21-323 (360)
70 COG1384 LysS Lysyl-tRNA synthe 99.8 2E-17 4.2E-22 175.0 20.9 258 22-397 19-319 (521)
71 cd07957 Anticodon_Ia_Met Antic 99.8 5.5E-18 1.2E-22 154.0 13.5 128 402-535 1-129 (129)
72 PF00750 tRNA-synt_1d: tRNA sy 99.7 7.7E-17 1.7E-21 171.2 15.9 128 19-147 17-200 (354)
73 PRK04156 gltX glutamyl-tRNA sy 99.6 1.2E-14 2.5E-19 159.9 15.1 96 25-139 102-197 (567)
74 cd07959 Anticodon_Ia_Leu_AEc A 99.6 3.4E-14 7.4E-19 126.8 12.9 115 403-535 2-117 (117)
75 cd07962 Anticodon_Ia_Val Antic 99.5 3.4E-13 7.4E-18 123.7 16.6 133 393-535 1-135 (135)
76 cd07958 Anticodon_Ia_Leu_BEm A 99.5 5.2E-13 1.1E-17 119.0 11.6 111 408-535 7-117 (117)
77 cd07960 Anticodon_Ia_Ile_BEm A 99.5 2.3E-12 5E-17 124.2 16.5 137 393-537 1-141 (180)
78 cd09287 GluRS_non_core catalyt 99.4 3E-12 6.4E-17 126.6 14.6 95 26-139 3-97 (240)
79 KOG4426 Arginyl-tRNA synthetas 99.4 3.9E-10 8.5E-15 115.8 27.8 344 15-490 181-613 (656)
80 PF08264 Anticodon_1: Anticodo 99.2 6.4E-11 1.4E-15 110.9 11.7 90 445-535 1-92 (153)
81 cd07961 Anticodon_Ia_Ile_ABEc 99.2 3E-10 6.4E-15 109.9 16.6 139 393-537 1-142 (183)
82 cd07375 Anticodon_Ia_like Anti 99.2 2.8E-10 6.1E-15 100.9 12.7 110 408-524 8-117 (117)
83 PRK12558 glutamyl-tRNA synthet 99.1 1.3E-09 2.8E-14 117.6 15.1 90 29-139 7-96 (445)
84 TIGR00464 gltX_bact glutamyl-t 99.1 2E-09 4.4E-14 118.2 16.2 89 30-139 7-96 (470)
85 PLN03233 putative glutamate-tR 99.1 1.2E-08 2.5E-13 111.6 21.2 94 25-139 12-105 (523)
86 TIGR00463 gltX_arch glutamyl-t 99.0 1.8E-08 3.9E-13 111.3 21.4 95 24-139 93-187 (560)
87 PTZ00402 glutamyl-tRNA synthet 99.0 4E-08 8.6E-13 108.6 23.2 105 12-138 41-146 (601)
88 PRK12410 glutamylglutaminyl-tR 99.0 6E-09 1.3E-13 111.9 13.3 88 31-139 6-93 (433)
89 PRK05347 glutaminyl-tRNA synth 98.9 3.5E-08 7.7E-13 108.2 19.1 94 25-139 30-124 (554)
90 KOG1195 Arginyl-tRNA synthetas 98.9 1.6E-07 3.4E-12 99.4 22.9 171 307-489 326-528 (567)
91 PLN02907 glutamate-tRNA ligase 98.9 6.2E-08 1.3E-12 111.1 20.9 95 24-139 213-307 (722)
92 cd00418 GlxRS_core catalytic c 98.9 2.4E-08 5.3E-13 98.5 15.3 86 29-135 6-92 (230)
93 PTZ00437 glutaminyl-tRNA synth 98.9 2E-08 4.4E-13 109.9 16.0 94 25-139 52-145 (574)
94 PRK01406 gltX glutamyl-tRNA sy 98.9 1E-08 2.2E-13 112.7 13.5 93 26-139 6-106 (476)
95 TIGR00440 glnS glutaminyl-tRNA 98.9 2.9E-08 6.3E-13 108.6 16.7 91 28-139 4-95 (522)
96 cd00807 GlnRS_core catalytic c 98.9 5.9E-08 1.3E-12 95.9 16.5 93 26-139 3-95 (238)
97 PRK14703 glutaminyl-tRNA synth 98.9 5.4E-08 1.2E-12 111.3 18.1 94 25-139 32-126 (771)
98 COG0008 GlnS Glutamyl- and glu 98.9 1.8E-08 3.8E-13 109.5 13.2 94 25-139 10-104 (472)
99 PLN02859 glutamine-tRNA ligase 98.9 6.3E-08 1.4E-12 109.6 17.4 94 25-139 265-358 (788)
100 PRK14895 gltX glutamyl-tRNA sy 98.9 4.9E-08 1.1E-12 106.7 15.8 85 312-401 202-288 (513)
101 cd00808 GluRS_core catalytic c 98.8 6.7E-08 1.4E-12 96.2 14.2 70 311-385 123-193 (239)
102 PLN02627 glutamyl-tRNA synthet 98.8 6.2E-08 1.3E-12 106.1 13.0 94 25-139 46-148 (535)
103 PF00749 tRNA-synt_1c: tRNA sy 98.5 5.7E-07 1.2E-11 94.0 12.1 89 30-139 7-96 (314)
104 cd07956 Anticodon_Ia_Arg Antic 98.1 9E-05 1.9E-09 69.6 14.5 115 371-490 2-118 (156)
105 KOG1149 Glutamyl-tRNA syntheta 98.1 8.3E-05 1.8E-09 77.7 15.0 80 320-406 254-335 (524)
106 TIGR03838 queuosine_YadB gluta 97.8 2.9E-05 6.3E-10 79.0 6.8 89 30-139 6-95 (272)
107 TIGR00233 trpS tryptophanyl-tR 97.7 0.0012 2.6E-08 69.6 16.3 86 24-122 3-91 (328)
108 PRK12556 tryptophanyl-tRNA syn 97.6 0.00059 1.3E-08 71.8 12.4 81 28-121 8-91 (332)
109 PRK05710 glutamyl-Q tRNA(Asp) 97.6 0.00013 2.8E-09 75.2 7.0 94 25-139 6-100 (299)
110 KOG1147 Glutamyl-tRNA syntheta 97.6 0.00027 5.9E-09 75.6 9.3 111 11-143 188-298 (712)
111 PRK13354 tyrosyl-tRNA syntheta 97.5 0.00046 1E-08 74.7 10.8 68 309-383 189-257 (410)
112 PRK12284 tryptophanyl-tRNA syn 97.5 0.00066 1.4E-08 72.9 11.2 91 26-130 5-98 (431)
113 cd00395 Tyr_Trp_RS_core cataly 97.4 0.002 4.3E-08 66.2 13.2 69 309-383 156-225 (273)
114 cd00806 TrpRS_core catalytic c 97.4 0.00099 2.2E-08 68.7 10.8 82 27-121 3-87 (280)
115 PRK05912 tyrosyl-tRNA syntheta 97.3 0.0027 5.9E-08 68.9 12.9 68 309-383 191-259 (408)
116 cd00805 TyrRS_core catalytic c 97.1 0.002 4.2E-08 66.2 8.4 67 309-383 154-221 (269)
117 PRK12282 tryptophanyl-tRNA syn 97.0 0.014 3E-07 61.6 14.4 69 28-110 7-75 (333)
118 PRK08560 tyrosyl-tRNA syntheta 97.0 0.0065 1.4E-07 64.2 11.8 76 21-110 28-103 (329)
119 PF05746 DALR_1: DALR anticodo 96.2 0.037 8E-07 49.1 9.4 80 411-491 2-81 (119)
120 COG0162 TyrS Tyrosyl-tRNA synt 96.0 0.034 7.3E-07 59.7 9.6 73 22-103 33-108 (401)
121 PF09190 DALR_2: DALR domain; 95.5 0.03 6.5E-07 43.7 5.1 27 458-484 1-28 (63)
122 PTZ00348 tyrosyl-tRNA syntheta 95.1 0.19 4.1E-06 57.8 12.0 76 23-110 32-108 (682)
123 smart00840 DALR_2 This DALR do 94.8 0.049 1.1E-06 41.2 4.5 30 459-488 2-32 (56)
124 PRK12285 tryptophanyl-tRNA syn 93.9 0.32 7E-06 52.0 9.9 91 21-125 64-157 (368)
125 KOG1148 Glutaminyl-tRNA synthe 93.6 0.25 5.4E-06 54.3 8.2 94 25-139 249-342 (764)
126 PLN02486 aminoacyl-tRNA ligase 93.4 0.5 1.1E-05 50.8 10.2 87 21-120 71-159 (383)
127 smart00836 DALR_1 DALR anticod 93.3 1.2 2.6E-05 39.5 11.2 77 411-490 2-83 (122)
128 COG1656 Uncharacterized conser 92.1 0.24 5.2E-06 45.9 4.9 72 52-135 18-91 (165)
129 COG0073 ARC1 EMAP domain [Gene 91.6 0.063 1.4E-06 48.1 0.5 39 606-644 21-60 (123)
130 PF00579 tRNA-synt_1b: tRNA sy 91.3 0.25 5.4E-06 51.4 4.6 57 309-367 152-213 (292)
131 PF01588 tRNA_bind: Putative t 90.9 0.14 3E-06 43.6 2.0 35 610-645 5-39 (95)
132 PRK14714 DNA polymerase II lar 90.9 0.71 1.5E-05 55.5 8.3 96 122-225 642-740 (1337)
133 COG0180 TrpS Tryptophanyl-tRNA 90.9 1.1 2.5E-05 46.5 8.8 92 23-127 5-100 (314)
134 PF01927 Mut7-C: Mut7-C RNAse 88.1 0.99 2.1E-05 41.8 5.5 116 52-187 12-136 (147)
135 cd07963 Anticodon_Ia_Cys Antic 86.9 1.5 3.4E-05 40.8 6.1 35 454-488 33-68 (156)
136 PLN02486 aminoacyl-tRNA ligase 84.9 6.6 0.00014 42.3 10.4 64 310-383 223-290 (383)
137 PRK12285 tryptophanyl-tRNA syn 84.7 0.66 1.4E-05 49.7 2.7 55 309-366 206-265 (368)
138 PTZ00126 tyrosyl-tRNA syntheta 84.4 1 2.2E-05 48.6 3.9 78 22-110 65-142 (383)
139 PRK12283 tryptophanyl-tRNA syn 83.8 0.49 1.1E-05 50.8 1.3 81 27-122 6-90 (398)
140 PRK00927 tryptophanyl-tRNA syn 82.8 0.93 2E-05 48.0 2.9 68 28-110 6-73 (333)
141 PLN02886 aminoacyl-tRNA ligase 82.8 5.3 0.00012 43.0 8.6 83 26-123 49-134 (389)
142 PTZ00126 tyrosyl-tRNA syntheta 82.6 3.4 7.3E-05 44.6 7.1 66 309-383 213-282 (383)
143 PRK04023 DNA polymerase II lar 82.4 2.6 5.6E-05 49.7 6.3 78 134-225 617-694 (1121)
144 PRK12283 tryptophanyl-tRNA syn 81.5 5.9 0.00013 42.7 8.3 42 336-383 245-288 (398)
145 COG0180 TrpS Tryptophanyl-tRNA 81.4 0.67 1.5E-05 48.1 1.2 31 335-365 177-211 (314)
146 TIGR00234 tyrS tyrosyl-tRNA sy 80.5 1.8 3.9E-05 46.6 4.1 39 24-68 31-70 (377)
147 PF00579 tRNA-synt_1b: tRNA sy 78.6 3.3 7.1E-05 43.0 5.2 75 22-110 4-82 (292)
148 PRK01233 glyS glycyl-tRNA synt 78.3 30 0.00066 40.2 13.2 82 405-489 566-647 (682)
149 cd02153 tRNA_bindingDomain The 78.1 0.83 1.8E-05 39.1 0.5 33 610-642 5-37 (99)
150 PRK00927 tryptophanyl-tRNA syn 78.0 5 0.00011 42.5 6.5 58 309-366 141-209 (333)
151 cd02799 tRNA_bind_EMAP-II_like 77.4 0.81 1.8E-05 39.7 0.3 33 609-641 11-43 (105)
152 PF13240 zinc_ribbon_2: zinc-r 75.0 2 4.3E-05 26.2 1.4 8 176-183 14-21 (23)
153 COG0751 GlyS Glycyl-tRNA synth 75.0 35 0.00077 39.3 12.3 116 371-489 541-656 (691)
154 TIGR00211 glyS glycyl-tRNA syn 74.7 40 0.00087 39.3 13.0 115 371-489 542-657 (691)
155 PF09862 DUF2089: Protein of u 74.7 5.9 0.00013 34.7 4.8 67 178-247 1-75 (113)
156 TIGR00373 conserved hypothetic 73.0 5 0.00011 37.6 4.3 45 175-226 109-155 (158)
157 TIGR00234 tyrS tyrosyl-tRNA sy 72.8 6.4 0.00014 42.4 5.7 19 348-366 216-234 (377)
158 PF13248 zf-ribbon_3: zinc-rib 71.8 2.5 5.5E-05 26.5 1.4 19 163-183 5-24 (26)
159 PF12773 DZR: Double zinc ribb 71.5 4 8.7E-05 29.9 2.7 35 168-202 4-39 (50)
160 KOG2007 Cysteinyl-tRNA synthet 69.9 1.3 2.8E-05 48.2 -0.5 28 221-248 132-159 (586)
161 cd02796 tRNA_bind_bactPheRS tR 69.0 1.7 3.6E-05 37.5 0.2 32 610-641 5-36 (103)
162 PRK06266 transcription initiat 68.7 7.1 0.00015 37.3 4.4 46 174-226 116-163 (178)
163 cd07955 Anticodon_Ia_Cys_like 68.7 9 0.00019 31.5 4.4 29 454-482 28-57 (81)
164 TIGR00399 metG_C_term methiony 67.9 1.5 3.2E-05 40.1 -0.4 31 610-641 46-76 (137)
165 PRK14908 glycyl-tRNA synthetas 67.7 59 0.0013 39.4 12.4 110 371-489 857-967 (1000)
166 TIGR02222 chap_CsaA export-rel 66.5 1.7 3.8E-05 37.8 -0.2 36 605-640 8-45 (107)
167 PRK00398 rpoP DNA-directed RNA 64.5 4.1 8.8E-05 29.5 1.4 29 177-205 5-34 (46)
168 PRK10089 tRNA-binding protein; 64.1 2.1 4.6E-05 37.6 -0.2 39 605-644 13-53 (112)
169 PRK05580 primosome assembly pr 62.5 50 0.0011 38.7 10.7 126 125-267 356-498 (679)
170 TIGR00595 priA primosomal prot 62.3 53 0.0011 37.0 10.5 126 124-266 187-329 (505)
171 COG2185 Sbm Methylmalonyl-CoA 61.4 17 0.00037 33.2 5.2 70 39-136 23-92 (143)
172 PRK14559 putative protein seri 59.6 7 0.00015 45.1 2.9 10 477-486 460-469 (645)
173 PRK05710 glutamyl-Q tRNA(Asp) 57.7 18 0.0004 37.6 5.4 67 309-384 194-262 (299)
174 KOG2145 Cytoplasmic tryptophan 55.3 11 0.00024 38.2 3.1 46 20-71 82-127 (397)
175 PF08271 TF_Zn_Ribbon: TFIIB z 54.0 11 0.00024 26.7 2.2 25 162-188 2-32 (43)
176 PF05191 ADK_lid: Adenylate ki 52.2 7.1 0.00015 26.7 0.9 28 178-205 4-34 (36)
177 smart00659 RPOLCX RNA polymera 50.7 12 0.00026 26.9 1.9 32 177-208 4-35 (44)
178 PRK14529 adenylate kinase; Pro 49.7 44 0.00096 33.2 6.4 64 67-135 40-103 (223)
179 cd02800 tRNA_bind_EcMetRS_like 49.1 12 0.00025 32.4 2.0 32 609-641 14-45 (105)
180 PRK14559 putative protein seri 48.8 15 0.00032 42.4 3.3 35 146-186 17-52 (645)
181 PRK14714 DNA polymerase II lar 48.7 12 0.00026 45.6 2.5 35 162-203 669-703 (1337)
182 cd02798 tRNA_bind_CsaA tRNA-bi 48.3 8.3 0.00018 33.5 0.9 33 609-641 14-47 (107)
183 TIGR00640 acid_CoA_mut_C methy 47.4 35 0.00077 30.8 4.9 66 47-136 17-82 (132)
184 PF03833 PolC_DP2: DNA polymer 47.3 6.3 0.00014 45.9 0.0 51 142-203 653-703 (900)
185 cd00350 rubredoxin_like Rubred 47.1 13 0.00029 24.7 1.5 25 177-202 3-27 (33)
186 TIGR03838 queuosine_YadB gluta 46.1 18 0.00039 37.1 3.1 66 309-383 187-254 (272)
187 COG1996 RPC10 DNA-directed RNA 45.4 14 0.0003 27.2 1.5 32 176-207 7-39 (49)
188 PLN02886 aminoacyl-tRNA ligase 44.1 23 0.0005 38.2 3.6 58 309-366 187-267 (389)
189 cd01675 RNR_III Class III ribo 42.0 28 0.0006 39.7 4.1 18 121-138 494-511 (555)
190 PF10571 UPF0547: Uncharacteri 41.3 19 0.00042 22.7 1.5 7 177-183 16-22 (26)
191 COG5270 PUA domain (predicted 41.2 18 0.00039 34.3 1.9 23 133-155 3-25 (202)
192 PRK00564 hypA hydrogenase nick 38.6 32 0.00069 30.4 3.1 8 194-201 90-97 (117)
193 PRK12496 hypothetical protein; 38.1 20 0.00043 33.8 1.9 25 177-202 129-153 (164)
194 smart00661 RPOL9 RNA polymeras 37.0 21 0.00045 26.2 1.4 25 177-201 2-29 (52)
195 PF03604 DNA_RNApol_7kD: DNA d 35.8 37 0.0008 22.6 2.3 27 178-204 3-29 (32)
196 PRK00420 hypothetical protein; 35.2 23 0.0005 31.0 1.6 10 194-203 42-51 (112)
197 COG1198 PriA Primosomal protei 34.1 73 0.0016 37.4 5.9 67 122-201 407-484 (730)
198 PF06940 DUF1287: Domain of un 33.6 38 0.00082 31.5 2.8 31 29-63 21-51 (164)
199 cd00729 rubredoxin_SM Rubredox 31.8 30 0.00065 23.3 1.4 24 178-202 5-28 (34)
200 KOG2241 tRNA-binding protein [ 31.5 12 0.00026 37.5 -0.8 37 607-644 100-136 (255)
201 TIGR00472 pheT_bact phenylalan 31.4 17 0.00037 43.4 0.3 35 608-642 48-82 (798)
202 PRK05978 hypothetical protein; 31.4 34 0.00073 31.6 2.1 10 160-171 33-42 (148)
203 KOG2713 Mitochondrial tryptoph 30.6 1.5E+02 0.0033 30.4 6.6 84 28-124 18-106 (347)
204 COG3877 Uncharacterized protei 30.2 25 0.00054 30.1 1.0 32 177-217 8-39 (122)
205 PF06750 DiS_P_DiS: Bacterial 30.1 37 0.00079 28.7 2.0 27 176-202 34-68 (92)
206 COG1645 Uncharacterized Zn-fin 29.2 30 0.00065 31.1 1.4 10 194-203 46-55 (131)
207 PRK14873 primosome assembly pr 29.1 83 0.0018 36.7 5.3 64 124-201 358-431 (665)
208 TIGR03590 PseG pseudaminic aci 29.1 86 0.0019 32.2 5.0 70 37-112 12-89 (279)
209 COG1439 Predicted nucleic acid 29.0 40 0.00086 32.0 2.2 27 176-205 140-166 (177)
210 COG5349 Uncharacterized protei 28.4 37 0.0008 29.9 1.7 25 159-185 20-50 (126)
211 COG1933 Archaeal DNA polymeras 28.3 44 0.00094 33.2 2.4 79 122-203 116-194 (253)
212 TIGR00125 cyt_tran_rel cytidyl 28.3 46 0.00099 25.5 2.2 31 33-71 7-37 (66)
213 PF07754 DUF1610: Domain of un 28.2 36 0.00078 21.1 1.2 7 149-155 3-9 (24)
214 PF03698 UPF0180: Uncharacteri 28.0 55 0.0012 26.8 2.6 48 51-98 12-79 (80)
215 KOG2713 Mitochondrial tryptoph 26.9 2.9E+02 0.0062 28.5 7.8 19 118-136 68-86 (347)
216 KOG0780 Signal recognition par 26.9 3.9E+02 0.0084 29.0 9.1 106 11-133 90-207 (483)
217 TIGR01206 lysW lysine biosynth 26.1 34 0.00073 25.8 0.9 16 194-209 24-39 (54)
218 cd02071 MM_CoA_mut_B12_BD meth 25.7 1.4E+02 0.0031 26.3 5.1 66 47-136 14-79 (122)
219 COG2401 ABC-type ATPase fused 25.7 42 0.0009 36.4 1.9 13 142-154 128-140 (593)
220 PRK03824 hypA hydrogenase nick 25.5 58 0.0013 29.6 2.6 35 118-153 38-79 (135)
221 COG1198 PriA Primosomal protei 25.1 45 0.00097 39.1 2.2 54 31-85 183-246 (730)
222 PRK08270 anaerobic ribonucleos 24.4 82 0.0018 36.7 4.1 16 88-103 528-543 (656)
223 COG2046 MET3 ATP sulfurylase ( 24.0 2.1E+02 0.0045 30.6 6.5 117 33-156 191-332 (397)
224 TIGR00595 priA primosomal prot 23.4 52 0.0011 37.1 2.2 35 162-202 215-250 (505)
225 KOG4718 Non-SMC (structural ma 22.6 27 0.00059 33.8 -0.1 79 119-199 134-223 (235)
226 PLN02413 choline-phosphate cyt 22.4 1.4E+02 0.003 30.8 4.8 29 33-69 35-63 (294)
227 PRK03094 hypothetical protein; 22.4 96 0.0021 25.4 3.0 46 52-97 13-78 (80)
228 PRK03681 hypA hydrogenase nick 22.3 76 0.0017 27.9 2.6 16 141-156 67-82 (114)
229 PF03033 Glyco_transf_28: Glyc 22.0 73 0.0016 28.3 2.6 26 39-68 9-34 (139)
230 COG2888 Predicted Zn-ribbon RN 21.9 63 0.0014 24.7 1.7 25 144-170 9-35 (61)
231 COG3357 Predicted transcriptio 21.8 64 0.0014 26.9 1.8 25 177-201 60-85 (97)
232 PF01747 ATP-sulfurylase: ATP- 21.8 4.1E+02 0.0089 26.2 7.9 40 122-165 135-175 (215)
233 PF01783 Ribosomal_L32p: Ribos 21.7 76 0.0017 24.0 2.2 19 162-182 28-46 (56)
234 PF04405 ScdA_N: Domain of Unk 21.6 1.2E+02 0.0025 23.1 3.1 25 71-95 28-53 (56)
235 PRK05580 primosome assembly pr 21.5 59 0.0013 38.1 2.3 35 162-202 383-418 (679)
236 KOG2623 Tyrosyl-tRNA synthetas 21.4 88 0.0019 33.5 3.2 48 23-75 63-112 (467)
237 PTZ00399 cysteinyl-tRNA-synthe 21.2 1.1E+02 0.0024 35.7 4.3 31 304-339 251-282 (651)
238 PF14671 DSPn: Dual specificit 21.2 68 0.0015 29.4 2.1 36 33-71 40-78 (141)
239 TIGR02370 pyl_corrinoid methyl 20.6 2.7E+02 0.0059 26.9 6.4 40 20-71 83-122 (197)
240 PRK00464 nrdR transcriptional 20.6 1E+02 0.0022 28.7 3.2 44 176-227 29-76 (154)
241 TIGR01501 MthylAspMutase methy 20.6 1.7E+02 0.0036 26.6 4.5 65 48-136 17-81 (134)
242 PRK00423 tfb transcription ini 20.6 75 0.0016 33.3 2.6 26 160-187 11-42 (310)
243 PF07295 DUF1451: Protein of u 20.6 1.5E+02 0.0032 27.4 4.2 27 177-203 114-141 (146)
244 PF04889 Cwf_Cwc_15: Cwf15/Cwc 20.5 1.2E+02 0.0026 30.6 3.9 43 583-625 151-193 (244)
245 PRK14890 putative Zn-ribbon RN 20.4 76 0.0017 24.3 1.9 36 145-184 8-45 (59)
246 PRK03824 hypA hydrogenase nick 20.4 1.5E+02 0.0032 26.9 4.2 19 193-211 108-127 (135)
247 PRK14704 anaerobic ribonucleos 20.1 1E+02 0.0022 35.6 3.8 8 193-200 573-580 (618)
248 PRK12380 hydrogenase nickel in 20.1 89 0.0019 27.4 2.6 12 142-153 68-79 (113)
No 1
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.1e-139 Score=1197.22 Aligned_cols=631 Identities=80% Similarity=1.345 Sum_probs=559.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHH
Q 006368 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDK 93 (648)
Q Consensus 14 ~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~ 93 (648)
+.+|..+++++|||||+|||||+|||||++++||++||++||+|++|++|+|++|||+||+||+.+|+++|++|+++|++
T Consensus 9 ~~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~ 88 (801)
T PLN02610 9 PKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDK 88 (801)
T ss_pred CcCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHH
Confidence 36788899999999999999999999999987899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCC
Q 006368 94 YHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESA 173 (648)
Q Consensus 94 ~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~ 173 (648)
+++.|+++|++|||++|.|+||++++|.+.||++|.+|+++|+||++++++|||++|++||+|++|+|+||.++|+++++
T Consensus 89 ~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a 168 (801)
T PLN02610 89 YHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSA 168 (801)
T ss_pred HHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccc
Q 006368 174 RGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253 (648)
Q Consensus 174 ~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~ 253 (648)
+||+||.||++++|.+|++|+|++||+++++++++||||+|++|+++|.+|+++++..+.|++|+...+.+||++||+||
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~ 248 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPR 248 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887677899999988899999999999
Q ss_pred eeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 254 CITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 254 ~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
||||++.||||||.+++++||+||||||++||||++.+|..+|.+||++|.+++++||+||||++||+++|||||||+|.
T Consensus 249 ~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~ 328 (801)
T PLN02610 249 CITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 328 (801)
T ss_pred ceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCC
Confidence 99999999999999988899999999999999999888988899999876688899999999999999999999999999
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
+|++|+.+++||||+++|+|||||+||+|+|.++++..|++|++||||++.+|+++|.+|||+.|.+++|++|++++|||
T Consensus 329 ~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNl 408 (801)
T PLN02610 329 NWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNF 408 (801)
T ss_pred CcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999833999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+++|+.+....+++|.+|........+.|++|++.+.++.+++.++|++|+++.|++.|+++++.+|+||+..+||+
T Consensus 409 v~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~ 488 (801)
T PLN02610 409 INRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 488 (801)
T ss_pred HHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 99999999820000688888853322234568899999999999999999999999999999999999999999999999
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCC
Q 006368 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNP 573 (648)
Q Consensus 494 l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 573 (648)
+.+++..++.+++++++++++++++||+||||++|++||++||++... .++.+....+......|+.+..|+.|+++++
T Consensus 489 L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~ 567 (801)
T PLN02610 489 LYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLSDEKGEVARAKRPWELVPAGHKIGTPEP 567 (801)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCccc-ccchhccccccccccccccCCCCCCCCCCCC
Confidence 988776778899999999999999999999999999999999986432 2222100000001112455677999999999
Q ss_pred CCCCCChHHHHHHHHHhccchhHH----HH-------HH----H-------HH-----------------------HHHH
Q 006368 574 LFKELKDDEVEFFRSKFAGSQADR----II-------RA----E-------AE-----------------------AAKT 608 (648)
Q Consensus 574 Lf~~i~~~~~~~~~~~~~~~~~~~----~~-------~~----~-------~~-----------------------~~~~ 608 (648)
||+||++++++++.+++.+.++++ ++ ++ + ++ ..++
T Consensus 568 lF~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlrV 647 (801)
T PLN02610 568 LFKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDIRV 647 (801)
T ss_pred CCCCCCHHHHHHHHHHhccchhhhhhhhhcccccccccccccccccccccccccccccccccccccccccccceeeeeEE
Confidence 999999988877655543321110 00 00 0 00 0123
Q ss_pred HHHHhhhcccCCCCceeEEEecCCCccceEEecccccc
Q 006368 609 AEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCF 646 (648)
Q Consensus 609 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~ 646 (648)
+++++.+++++|+||+.++||+|+++.|||+ .|..++
T Consensus 648 g~I~~~~~hp~adkL~~~~Vd~G~~~~r~iv-sG~~~~ 684 (801)
T PLN02610 648 GLIVKAEKHPDADSLYVEEIDVGEGAPRTVV-SGLVKY 684 (801)
T ss_pred EEEEEEEeecCCCcceEEEEEeCCCceEEEE-eCcccc
Confidence 4556777888999999999999988899995 455544
No 2
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-139 Score=1133.56 Aligned_cols=546 Identities=39% Similarity=0.706 Sum_probs=511.7
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
.++++|||||+|||||+|||||+++ +|+|||++||+|++|++|+|+||||+||+||+.+|+++|++|+++|+++++.|+
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~-~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~ 81 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK 81 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccc
Q 006368 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (648)
Q Consensus 100 ~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~ 179 (648)
++|+.|+|+||.|+|||+++|.+.||++|++|+++|+||.++++||||++|++||+|++|+|+||. ||+++++||+||
T Consensus 82 ~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~--cg~~~arGD~Ce 159 (558)
T COG0143 82 ELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPK--CGGEDARGDQCE 159 (558)
T ss_pred HHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCC--cCccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee-c
Q 006368 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-D 258 (648)
Q Consensus 180 ~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR-~ 258 (648)
+||+.++|.+|++|+|++||+++++++++||||+|++|+++|++|+++++. ..||.++++++.+||++||+|||||| +
T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~-~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPD-FIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcc-ccCChHHHHHHHHHHHccCcccceecCC
Confidence 999999999999999999999999999999999999999999999999884 36899999999999999999999999 7
Q ss_pred cCCCcccCCcCCCCceeeeeecccchHHHhccccc-----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 259 ~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
++||||||+. ++||+|||||||+||||+++.+. .+|.+||+++ +++++|||||||++||++|||||||++|.
T Consensus 239 ~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKDii~FHav~wPamL~~~~~ 315 (558)
T COG0143 239 LDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKDIIRFHAVYWPAMLMAAGL 315 (558)
T ss_pred CCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccccCcchhhHHHHHHHhCCC
Confidence 9999999965 89999999999999999987664 5799999875 89999999999999999999999999998
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
+ +|+.+++||||+++|+|||||+||+|+|.++++ .|++|+|||||++..|+++|++||++.|.+++|++|+|++|||
T Consensus 316 ~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~-~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl 392 (558)
T COG0143 316 P--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE-QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNL 392 (558)
T ss_pred C--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH-HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+++|+.| +++|.+|....... +.|+++++.+.++.+.+.++|+.+++++|++.+|+|++.+|+||++.+||+
T Consensus 393 ~~R~~~fi~k----~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~ 467 (558)
T COG0143 393 ANRTLGFINK----YFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWK 467 (558)
T ss_pred HHHHHHHHHh----ccCCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999 89999987542223 678899999999999999999999999999999999999999999999999
Q ss_pred hccCC-hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccc-cccccccCcccccCCCCccCCCCCccCCC
Q 006368 494 LYKED-QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH-ISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (648)
Q Consensus 494 l~k~~-~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 571 (648)
+.|++ +++++++++.+++++|+++++|+||||.+|++|+++||.+.+.. .++.. .+..+..|+.++++
T Consensus 468 l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~----------~~~~l~~~~~~~~~ 537 (558)
T COG0143 468 LAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLG----------ARQPLLPGHKLGPP 537 (558)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhh----------hccccCCCcccCCc
Confidence 99875 68899999999999999999999999999999999999874332 11111 12246678999999
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 006368 572 NPLFKELKDDEVEFFRSKF 590 (648)
Q Consensus 572 ~~Lf~~i~~~~~~~~~~~~ 590 (648)
++||+|++.++++++.++.
T Consensus 538 ~~lF~ri~~~~~~~~~~~~ 556 (558)
T COG0143 538 EPLFPRIEEEAIEELIEAL 556 (558)
T ss_pred ccCccccCHHHHHHHHHhh
Confidence 9999999999888776543
No 3
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.8e-122 Score=1049.52 Aligned_cols=584 Identities=33% Similarity=0.611 Sum_probs=526.0
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++++||||+|||||.|||||+++ +|.+|+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|++|++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~-~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHH-HHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999997 78999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
++.|||++|.|+||++++|.+.++++|.+|+++|+||++++.+|||+.|++||+|++|+|+||. |++++++|++||.|
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~--C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCC--CCCcccCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
|..+++.+|++|+|++||+++++++++||||+|++|+++|.+|+++.+ .||+++++.+.+||++||.||||||++.|
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~d~~ISR~~~W 235 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG---ELQPNVANKMKEWLEEGLQDWDISRDAPY 235 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhCCCcccceeeeCCc
Confidence 999999999999999999999999999999999999999999997643 37999999999999999999999999999
Q ss_pred -CcccCCcCCCCceeeeeecccchHHHhccccc-----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCc
Q 006368 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (648)
Q Consensus 262 -Gi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~ 335 (648)
|||||++ +++++||||||++||+|++.+|+ ++|..||+.+.+++++||+||||++||+++|||||+++|+
T Consensus 236 ~GipvP~~--~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-- 311 (673)
T PRK00133 236 FGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-- 311 (673)
T ss_pred cceECCCC--CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC--
Confidence 9999976 79999999999999999886664 2599999433457789999999999999999999999986
Q ss_pred ccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCC-CCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 336 TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 336 ~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~-~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++||||++.++.+ +|.+|+++.+....|++++++++|++
T Consensus 312 ~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie-~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 312 RLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred CCCCEEeeeccEEecCCcccccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999 799999999999989998 99999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (648)
+|+.+++.+ ++++.+|. .+.|+++++.+..+.+.+.++|++|+++.|++.++++++.+|+|++..+||.+
T Consensus 391 ~R~~~~~~k----~~~~~~~~------~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~ 460 (673)
T PRK00133 391 SRTAGFINK----RFDGKLPD------ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460 (673)
T ss_pred HHHHHHHHH----hcCCCCCC------CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 999999887 56665552 23477999999999999999999999999999999999999999999999998
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCC
Q 006368 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (648)
Q Consensus 495 ~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 574 (648)
.+++..++.++++++++++++++++|+||||++|++||++||.+. ..|.+ +..+..|+.++.+++|
T Consensus 461 ~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~---~~~~~-----------~~~~~~g~~~~~~~~l 526 (673)
T PRK00133 461 AKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEE---LTWDD-----------AQQPLAGHPINKFKIL 526 (673)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCc---cChhh-----------hcCCCCCCCcCCCCcC
Confidence 876667788899999999999999999999999999999999752 12221 1224468999999999
Q ss_pred CCCCChHHHHHHHHHhccchhHHHHHHH-H-------------------HHHHHHHHHhhhcccCCCCceeEEEecCCCc
Q 006368 575 FKELKDDEVEFFRSKFAGSQADRIIRAE-A-------------------EAAKTAEQLKKTKISGENGLCSLQSETSSNE 634 (648)
Q Consensus 575 f~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~ 634 (648)
|+|++++++++..+++++++++++++++ . -..+++++++.+++++++||+.+++|+|.+
T Consensus 527 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~di~vg~I~~~~~~p~~~~l~~~~vd~G~~- 605 (673)
T PRK00133 527 FTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVDLRVAKIVEAEKVEGADKLLKLTLDLGEE- 605 (673)
T ss_pred CcCCCHHHHHHHHHHhhcchhhcccchhcccccccCccccccCHHHHhhhhcceeeeEeeecCCCCCccceeeEecCCc-
Confidence 9999998888776665543332211110 0 012445778888999999999999999875
Q ss_pred cceEEec
Q 006368 635 GNQITCN 641 (648)
Q Consensus 635 ~~q~~~~ 641 (648)
.+||+|.
T Consensus 606 ~~~iv~g 612 (673)
T PRK00133 606 TRQVFSG 612 (673)
T ss_pred eeEEEcC
Confidence 8998653
No 4
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-122 Score=924.70 Aligned_cols=565 Identities=62% Similarity=1.103 Sum_probs=539.1
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHH
Q 006368 10 AAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89 (648)
Q Consensus 10 ~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e 89 (648)
++|.++.|+.++++++||++.||||..||+|++.+.+++|||++||.+.+|++..|+|||||+|++++.+|.++|++|++
T Consensus 2 ~~~~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~e 81 (567)
T KOG1247|consen 2 EKKDPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQE 81 (567)
T ss_pred CCCCCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccc
Q 006368 90 ICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCN 169 (648)
Q Consensus 90 ~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~ 169 (648)
+|++++..|+..+++++|++|.|.|||.+.+...+|.+|.+|+++|+..+.+..++||..|++|++||+|+|+||. |+
T Consensus 82 lcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~--C~ 159 (567)
T KOG1247|consen 82 LCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPF--CG 159 (567)
T ss_pred HHHhcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcc
Q 006368 170 YESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEG 249 (648)
Q Consensus 170 ~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g 249 (648)
|++|+||||++||+.+++.+|.+|+|.+|...++.+.+.|+||.|+++++++.+|++.......|++|+.+++++||++|
T Consensus 160 yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~g 239 (567)
T KOG1247|consen 160 YDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDG 239 (567)
T ss_pred CccccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999988766789999999999999999
Q ss_pred cccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhh
Q 006368 250 LKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLL 329 (648)
Q Consensus 250 l~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~ 329 (648)
|.++|||||+.||+|||.++++++|+||||||++||+|.++.|.++|++||.+|.++++++|||||++.||+++||++++
T Consensus 240 l~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~l 319 (567)
T KOG1247|consen 240 LKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQL 319 (567)
T ss_pred ccccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHH
Q 006368 330 GTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNN 409 (648)
Q Consensus 330 a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 409 (648)
+++..|++-+++.+++||+.+..|||||+|..|...++.+.+.+++.+||||++.+|+.+|..|||++|..++|++|.++
T Consensus 320 gt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~N 399 (567)
T KOG1247|consen 320 GTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNN 399 (567)
T ss_pred cCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 410 LGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 410 l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
||||++|++.++.+ .++|.+|... ...-++.+++.++.+..++.++||..++++|++.+|++.+++|.|+|+.
T Consensus 400 LGNFvNR~l~fv~~----~~~g~Vp~~~---~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 400 LGNFVNRVLKFVAA----KYNGVVPEME---LTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQEN 472 (567)
T ss_pred HHHHHHHHHHHHHH----hhCCccccee---ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 99999999999987 6899999752 2223778999999999999999999999999999999999999999999
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccC
Q 006368 490 QFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIG 569 (648)
Q Consensus 490 ~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~ 569 (648)
+.|++...+++++..++.++++++..++.+|+||||.+|.+|++||++|.. -+.+ +.+..+++||+|+
T Consensus 473 ~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~---~~~~---------~~~~~l~~gH~ig 540 (567)
T KOG1247|consen 473 TDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPET---LFPD---------RFICRLLAGHRIG 540 (567)
T ss_pred cccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCccc---cCCC---------ccceeecCcCccC
Confidence 999998888899999999999999999999999999999999999999742 1222 3455688999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhccchh
Q 006368 570 SPNPLFKELKDDEVEFFRSKFAGSQA 595 (648)
Q Consensus 570 ~~~~Lf~~i~~~~~~~~~~~~~~~~~ 595 (648)
+++|||+++++++|+++++++++.+.
T Consensus 541 ~~~pLFq~l~~~qiee~r~k~gg~q~ 566 (567)
T KOG1247|consen 541 TPSPLFQKLDEDQIEEWRAKFGGQQS 566 (567)
T ss_pred CccHHHHhcCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999988753
No 5
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-113 Score=979.43 Aligned_cols=561 Identities=28% Similarity=0.517 Sum_probs=489.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|||||+|||||.|||||+++ ||.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|+++++.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~-~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYT-TIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchH-HHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
+|++|||++|.|+||+++.|...++++|.+|.++|+||++++++|||+.|++||+++++
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l--------------------- 140 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQL--------------------- 140 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHh---------------------
Confidence 99999999999999999999999999999999999999999999999999999998763
Q ss_pred cCCCCCccccCC-CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH-HHHhcccccceeeec
Q 006368 181 CGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH-AWLKEGLKVRCITRD 258 (648)
Q Consensus 181 cg~~l~~~el~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~gl~d~~IsR~ 258 (648)
++ ++|++||+++++++++||||+|++|+++|.+|+++++.. .+|++..+.+. +||++||+||||||+
T Consensus 141 ----------~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~ 209 (648)
T PRK12267 141 ----------VDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRT 209 (648)
T ss_pred ----------ccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCC
Confidence 22 567778999999999999999999999999999887532 36888888888 999999999999998
Q ss_pred -cCCCcccCCcCCCCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 259 -LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 259 -~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
..||||||++ +++|+||||||+++|+|++ +|+ .+|++||| .+ +||+||||++||+++||+||+++|.
T Consensus 210 ~~~WGipvP~~--~~~v~yVWfDA~~~y~s~~-~~~~~~~~~~~~~wp--~~---~~~~GkDii~fH~i~wpa~l~~~~~ 281 (648)
T PRK12267 210 SFDWGIPVPFD--PKHVVYVWIDALLNYITAL-GYGSDDDELFKKFWP--AD---VHLVGKDILRFHAIYWPIMLMALGL 281 (648)
T ss_pred CCCcceECCCC--CCCEEEEcccchHHHHHHc-CCCCCCchHHHhhcc--cc---eEEEeeeecchhHHHHHHHHHhCCC
Confidence 5899999987 6999999999999999987 664 36999994 45 8999999999999999999999985
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++||++.|.+++|++|++++||+
T Consensus 282 --~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~-~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl 358 (648)
T PRK12267 282 --PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVD-RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNL 358 (648)
T ss_pred --CCCcEEEecceEEECCceecccCCcccCHHHHHH-HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 5899999999999999999999999999999998 7999999999999889999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+.+++.+ ++++.+|... ...+.|+++++.++.+.+++.++|++|++++|++.++++++.+|+|++..+||.
T Consensus 359 ~~R~~~~~~~----~~~~~~p~~~--~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 359 LNRTVAMINK----YFDGEIPAPG--NVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHHHHH----hcCCcCCCCC--CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999987 6777776421 234568899999999999999999999999999999999999999999999999
Q ss_pred hccC--ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCC
Q 006368 494 LYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (648)
Q Consensus 494 l~k~--~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 571 (648)
+.++ +..++.++++++++++++++++|+||||++|++||++||.+... ..|.+ ...+..+..|+.|+.+
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~-~~~~~--------~~~~~~~~~g~~~~~~ 503 (648)
T PRK12267 433 LAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEEL-TSWES--------LLEWGGLPAGTKVAKG 503 (648)
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccc-cchhh--------hhhhccccCCCccCCC
Confidence 8765 34678889999999999999999999999999999999985322 12221 0113446679999999
Q ss_pred CCCCCCCChH-HHHHHHHHhccchhHHHHHH-HHH--------------HHHHHHHHhhhcccCCCCceeEEEecCCCcc
Q 006368 572 NPLFKELKDD-EVEFFRSKFAGSQADRIIRA-EAE--------------AAKTAEQLKKTKISGENGLCSLQSETSSNEG 635 (648)
Q Consensus 572 ~~Lf~~i~~~-~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ 635 (648)
++||+|++++ +++.+. ++.+.++.+++++ ..+ ..+++++++.+++++++||+.+++|+|.++.
T Consensus 504 ~~lf~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~ 582 (648)
T PRK12267 504 EPLFPRIDVEEEIAYIK-EQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVAEVLEAEKVEKSDKLLKLQVDLGEEEP 582 (648)
T ss_pred CCCcCCCCcHHHHHHHH-HhhhhhhcccccccccCcccCccCHhhhhhhceeEEEEEeeccCCCCCccceEEEEeCCCce
Confidence 9999999975 454433 3222211111100 000 1123366778888999999999999987778
Q ss_pred ceEEec
Q 006368 636 NQITCN 641 (648)
Q Consensus 636 ~q~~~~ 641 (648)
|||.|.
T Consensus 583 ~~iv~g 588 (648)
T PRK12267 583 RQIVSG 588 (648)
T ss_pred EEEEeC
Confidence 999653
No 6
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=8e-111 Score=933.73 Aligned_cols=509 Identities=25% Similarity=0.464 Sum_probs=451.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++|+||||||||||.||||||++ ++.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|.++|+++++.|++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~-~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~ 146 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYT-TIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRT 146 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHH-HHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456999999999999999999998 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
+++.|||++|.|+||++|.|.+.||++|.+|+++|+||++++++|||++|++|+++.++.+
T Consensus 147 ~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~------------------- 207 (616)
T PLN02224 147 LWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE------------------- 207 (616)
T ss_pred HHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998754321
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec-c
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD-L 259 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~-~ 259 (648)
++.|..||+++++++++||||+|++|++.|++|+++++.. .+|++.++.+.+||++||+||||||+ .
T Consensus 208 -----------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~-~~p~~~~~~~~~~l~~gL~d~~ISR~~~ 275 (616)
T PLN02224 208 -----------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRF-VQPSYRLNEVQSWIKSGLRDFSISRALV 275 (616)
T ss_pred -----------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhcCCCCccccCCCC
Confidence 2457788999999999999999999999999999887653 24777888899999999999999998 4
Q ss_pred CCCcccCCcCCCCceeeeeecccchHHHhccccchH------HHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 260 ~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~------~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
.||||||++ ++||+||||||++||||++..+..+ +..||+ .+ +||+||||++||+++|||||+++|+
T Consensus 276 ~WGIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~--~~---v~~iGKDii~fH~i~wpa~l~~~g~ 348 (616)
T PLN02224 276 DWGIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWP--AS---LHLIGKDILRFHAVYWPAMLMSAGL 348 (616)
T ss_pred CCceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCCC--cc---eEEEeecccccHHHHHHHHHHHCCC
Confidence 899999987 6999999999999999987655421 334674 34 8999999999999999999999986
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
++|+.+++||||+++|+|||||+||+|+|.++++ .||+|++||||++.+|+.+|++|+++.|.+++|++|++++||+
T Consensus 349 --~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~-~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNl 425 (616)
T PLN02224 349 --ELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQ-KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNL 425 (616)
T ss_pred --CCCcEEEecccEecCCccccccCCccCCHHHHHH-HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|++.++.+ ++++.+|... .....++++.+.+..+++.+.++|+++++++|++.++++++.+|+|++..+||+
T Consensus 426 l~R~l~~~~k----~~~~~~~~~~--~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 426 LNRTLGLLKK----NCESTLVEDS--TVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHH----hcCCcCCCcc--ccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 9999999988 6777666421 112336789999999999999999999999999999999999999999999999
Q ss_pred hccCC---hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccc--cccccccCcccccCCCCccCCCCCcc
Q 006368 494 LYKED---QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH--ISLCDEKGDVDRARRPWEIIPAGHKI 568 (648)
Q Consensus 494 l~k~~---~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~~l 568 (648)
+.+.+ ..++..+++++.++++++++||+||||++|++||++||.+.+.. ..|.+ ..++.++.|+.|
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~---------~~~~~~~~g~~i 570 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSD---------TKWGGLKGGQVM 570 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhh---------hccccCCCCCCC
Confidence 88753 24567788999999999999999999999999999999864321 11211 013345678899
Q ss_pred CCCCCCCCCCChHHHHHH
Q 006368 569 GSPNPLFKELKDDEVEFF 586 (648)
Q Consensus 569 ~~~~~Lf~~i~~~~~~~~ 586 (648)
+.+.+||+||+.++++.+
T Consensus 571 ~~~~~Lf~ri~~~~~~~~ 588 (616)
T PLN02224 571 EQASPVFARIELNPEKEE 588 (616)
T ss_pred CCCCCCCCCcCcchHHHH
Confidence 999999999996544443
No 7
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=6.5e-110 Score=933.44 Aligned_cols=525 Identities=42% Similarity=0.784 Sum_probs=485.0
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
++||+|+|||||.+||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~-~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYT-TILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999997 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCC
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~ 183 (648)
+|||++|.|+||+++.|...++++|++|.++|+||++++++|||+.|++|++|++|+|+||. |++++++|++|+.||.
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~--c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCC--CCCcccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccC-CC
Q 006368 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK-WG 262 (648)
Q Consensus 184 ~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~-WG 262 (648)
.+++.+|++|+|++||++++.++++||||+|++|+++|.+++++++....||++..+.+.+||+++++||||||++. ||
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WG 237 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCC
Confidence 99999999999999999999999999999999999999999998765556888988899999999999999999999 99
Q ss_pred cccCCcCCCCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccC
Q 006368 263 VPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (648)
Q Consensus 263 i~vP~~~~~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p 338 (648)
||+|.+ +++++||||||+++|++.+ +++ .+|++||+.+.+++++|++|+||++||+++||||++++|. ++|
T Consensus 238 ipvP~~--~~~~~yvW~da~~~y~~~~-~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~--~~~ 312 (530)
T TIGR00398 238 IPVPND--PNKVVYVWFDALIGYISSL-GILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGL--PLP 312 (530)
T ss_pred eeCCCC--CCcEEEEeecchHHhHhhh-ccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCC--CCC
Confidence 999988 6999999999999999865 332 4689999865578899999999999999999999999985 579
Q ss_pred ceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHH
Q 006368 339 KTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVL 418 (648)
Q Consensus 339 ~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~ 418 (648)
+.+++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++|+++.+.+..|++++++++|+++|+.
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~-~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHH-HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 799999999999888889999999999999999999999999999999
Q ss_pred HhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 006368 419 SFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED 498 (648)
Q Consensus 419 ~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~ 498 (648)
+++.+ ++++.+|... ...+.|+++++.+..+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+.+.+
T Consensus 392 ~~~~~----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKK----YFNGVLPSED--ITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHH----hcCCcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh
Confidence 99887 4555555321 23467889999999999999999999999999999999999999999999999988654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCCCCCC
Q 006368 499 QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578 (648)
Q Consensus 499 ~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~Lf~~i 578 (648)
. ++.++++++.+++++++++|+||||++|++||++||.+.... . ...+..|+.++.+.+||+|+
T Consensus 466 ~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~----~-----------~~~~~~~~~i~~~~~lf~ki 529 (530)
T TIGR00398 466 P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWD----F-----------KLKLLEGHKLNKAEPLFSKI 529 (530)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhh----h-----------hcCCCCCCCCCCCCCCCCCC
Confidence 4 677889999999999999999999999999999999753211 0 01244689999999999998
Q ss_pred C
Q 006368 579 K 579 (648)
Q Consensus 579 ~ 579 (648)
+
T Consensus 530 ~ 530 (530)
T TIGR00398 530 E 530 (530)
T ss_pred C
Confidence 5
No 8
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8e-110 Score=937.86 Aligned_cols=548 Identities=44% Similarity=0.819 Sum_probs=496.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++||+|+|||||.|||||+++.|+.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|.++|+++.+.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999965889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++++|||++|.|+||++++|.+.++++|.+|+++|+||++.+.+|||+.|++||++++|.|+||. |++.+++|+.||.
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCC--CCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccC
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~ 260 (648)
||+.+++.+|++|+|++||++++++.++||||++++|++.|.+++++. ..||+...+++.+||+++++||||||++.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~---~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~ 236 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS---GDWPPNVLNFTLNWLKEGLKPRAITRDLD 236 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHhCCCCCcCceeeCC
Confidence 999999999999999999999999999999999999999999999853 35799999999999998899999999999
Q ss_pred CCcccCCcCCCCceeeeeecccchHHHhcccc------chHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC
Q 006368 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (648)
Q Consensus 261 WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~ 334 (648)
||+|+|.+..+++++||||||+++|++....+ +++|..||.+ .+...+|++|+||++||+++||+++++.|.+
T Consensus 237 WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~d-s~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~ 315 (556)
T PRK12268 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLD-PETKSYYFIGKDNIPFHSIIWPAMLLGSGEP 315 (556)
T ss_pred CCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCC-CCCeEEEEEeeccCcchHHHHHHHHHhcCCC
Confidence 99999954457899999999999999865433 2368889942 2345699999999999999999999999966
Q ss_pred cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 335 ~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
+++|+.+++||||+++|+|||||+||+|+|.|+++ .||+|++|||+++.++..+|++|+++.+....|++++++++|++
T Consensus 316 ~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~-~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 316 LKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALE-RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CCCCCEeeccCCEEECCeeeccCCCcccCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 67889999999999999999999999999999999 79999999999998888999999999999888999999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (648)
+|+..++.+ ..++.+|. ....+.|+++++.+..+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+
T Consensus 395 ~r~~~~~~~----~~~~~~~~---~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~ 467 (556)
T PRK12268 395 NRVLSFIEK----YFGGIVPP---GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467 (556)
T ss_pred HHHHHHHHH----hcCCcCCC---CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 999999876 34444441 12345688999999999999999999999999999999999999999999999988
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCC
Q 006368 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (648)
Q Consensus 495 ~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 574 (648)
.+.+...+..+++++.+++++++.+|+||||++|++||++||.+......|.+ +..++.|+.|+.+++|
T Consensus 468 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~-----------~~~~~~g~~i~~~~~l 536 (556)
T PRK12268 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWES-----------LKPLLPGHPINKPEPL 536 (556)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhh-----------hcCCCCCCCCCCCCCC
Confidence 76556667788999999999999999999999999999999973111111211 1135679999999999
Q ss_pred CCCCChHHHHHHHHHhccc
Q 006368 575 FKELKDDEVEFFRSKFAGS 593 (648)
Q Consensus 575 f~~i~~~~~~~~~~~~~~~ 593 (648)
|+|+++++++++++.++++
T Consensus 537 f~r~~~~~~~~~~~~~~~~ 555 (556)
T PRK12268 537 FKKIDDEQIEEELERLGGA 555 (556)
T ss_pred CCCCCHHHHHHHHHHhcCC
Confidence 9999999999999887764
No 9
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-110 Score=836.48 Aligned_cols=480 Identities=29% Similarity=0.472 Sum_probs=428.8
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+.+++++|||+.|||.+|||||+|++ |.+|+++|++|++|..|+|.+||||||.||+.+|+.+|..|.++||+.++.|+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~-llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYST-LLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHH-HHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 34589999999999999999999995 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc-ccCCCCccccCCCCCccc
Q 006368 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQC 178 (648)
Q Consensus 100 ~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~g~~c 178 (648)
++++.+||+|+.|+|||+|.|...||+||..+.++|+||.+.++||||++||+|++++.|. ..||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999998774 34443
Q ss_pred cccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec
Q 006368 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (648)
Q Consensus 179 ~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~ 258 (648)
|+ ++...+|++++++++.+|||+||+|+..|.++++++|.+. .|....+.+.+||+.||+|+||||.
T Consensus 183 ---gk---------~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fv-qPs~~~~qVl~~lktglpDlSISRp 249 (578)
T KOG0436|consen 183 ---GK---------VVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFV-QPSYFHNQVLSWLKTGLPDLSISRP 249 (578)
T ss_pred ---Cc---------eeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCcc-CchHHHHHHHHHHHcCCCcccccCh
Confidence 11 3445679999999999999999999999999999999763 4666778899999999999999994
Q ss_pred ---cCCCcccCCcCCCCceeeeeecccchHHHhccccch-------HHHhhcCCCCCcceEEEEeccccchhHhHHHHHh
Q 006368 259 ---LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-------EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTL 328 (648)
Q Consensus 259 ---~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~-------~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l 328 (648)
++||||||+| +.++|||||||++||||+. +++. .+.-+||. . +|+|||||++||++||||||
T Consensus 250 sarl~WGIPvP~d--dsQtIYVWfDAL~nYiSvi-g~~~~~~N~k~~ls~~wPa--t---~HvIGKDIlrFHavYWPafL 321 (578)
T KOG0436|consen 250 SARLDWGIPVPGD--DSQTIYVWFDALLNYISVI-GYPNKQQNLKTALSFGWPA--T---LHVIGKDILRFHAVYWPAFL 321 (578)
T ss_pred hhhcccCCCCCCC--CcceEEEeHHHHhhHHHhh-cCCchhccccceeecCCCc--e---eeehhhhhhhhhhhhhHHHH
Confidence 7799999998 6999999999999999985 6652 36667953 4 89999999999999999999
Q ss_pred hhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHH
Q 006368 329 LGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 329 ~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
||+|++ +|+.+++||||+.+|.|||||+||||+|.++++ +||+|++|||||+++..+.|.||+++.+....|.+|++
T Consensus 322 maAGlp--lP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~-kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 322 MAAGLP--LPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQ-KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred HhcCCC--CccEEEEeeeeeecceecchhhccccCHHHHHH-HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 999986 899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHH--hhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 006368 409 NLGNFINRVLS--FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (648)
Q Consensus 409 ~l~N~~~R~~~--~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi 486 (648)
++||+++|+++ +..+.. ..+.+-.. .........|...+..+++.+.+.+|+|.+++|++.++++++.+|.|+
T Consensus 399 ~lG~LlnRc~gkkln~sn~---e~~l~~~s--~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlv 473 (578)
T KOG0436|consen 399 TLGNLLNRCLGKKLNISNC---ESTLVVDS--PTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLV 473 (578)
T ss_pred HHHHHHHHHhhcccChhcc---ccccccCC--cchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 333310 11111111 011122336888999999999999999999999999999999999999
Q ss_pred HhhhhhhhccCCh---hhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccc
Q 006368 487 QESQFWKLYKEDQ---PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542 (648)
Q Consensus 487 ~~~~pw~l~k~~~---~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~ 542 (648)
|..+||++.++.. +.+..++..+++++|+++++|+|++|.+|.+++.+||++.+++
T Consensus 474 q~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 474 QQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQR 532 (578)
T ss_pred hhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhc
Confidence 9999999987643 5678889999999999999999999999999999999987654
No 10
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1e-104 Score=849.39 Aligned_cols=385 Identities=41% Similarity=0.816 Sum_probs=342.6
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
||||||+|||||+|||||++ +||.||+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 58999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCC
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~ 183 (648)
++||++|.|+||++++|++.|+++|++|+++|+||++++++|||++|++|++|++|+|+||. |+++.++|++|+.||+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~--C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPY--CGSDKARGDQCENCGR 157 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETT--T--SSCTTTEETTTSS
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccC--cCccccCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCc
Q 006368 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263 (648)
Q Consensus 184 ~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi 263 (648)
.++|.+|++|+|..||++++++++++|||+|++|+++|.+|+++.+.. |++++++.+.+||++||+|+||||+.+|||
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF--PPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS--SHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC--CChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 999999999999999999999999999999999999999999988754 889999999999999999999999999999
Q ss_pred ccCCcCCCCceeeeeecccchHHHhccccc------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCccc
Q 006368 264 PVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337 (648)
Q Consensus 264 ~vP~~~~~~~v~yVWfDa~~~yis~~~~~~------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~ 337 (648)
|||++ ++||+||||||++||+|++..+. ..|.+||..+.+++++||+||||++||+++|||||+|+|++ +
T Consensus 236 ~vP~~--~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~--l 311 (391)
T PF09334_consen 236 PVPGD--PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLP--L 311 (391)
T ss_dssp EETTE--EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB----
T ss_pred eeecc--CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCC--C
Confidence 99966 79999999999999999875543 46999995456789999999999999999999999998764 8
Q ss_pred CceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHH
Q 006368 338 MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRV 417 (648)
Q Consensus 338 p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~ 417 (648)
|+.+++||||+++|+|||||+||+|++.++++ .|++|++||||++.+|+.+|.+|+++.|.+++|++|++++||+++|+
T Consensus 312 P~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~-~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 312 PRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLE-EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp -SEEEEE--EEETTCCEETTTTESSBHHHHHH-HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CCEEEeeeeEEECCeeccccCCcccCHHHHHH-hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 89999999999999999999999999999999 69999999999999999999999999999999999999999999998
Q ss_pred H
Q 006368 418 L 418 (648)
Q Consensus 418 ~ 418 (648)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 5
No 11
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-96 Score=821.96 Aligned_cols=502 Identities=29% Similarity=0.547 Sum_probs=449.1
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++++||+|+|||||.+||||+++ +|.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|.++|+++++.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~-~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYT-TLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999997 78999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
+++|||++|.|++|+++.|...|+++|.+|.++|+||++.+++|||++|++|++++++...
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~------------------- 140 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIED------------------- 140 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998764310
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee-ccC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DLK 260 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR-~~~ 260 (648)
.|+|++||+++++++++||||+|++|++.|.+++++++.. .+|+..++.+.+|+++++.|||||| ++.
T Consensus 141 ----------~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~D~~isR~~~~ 209 (511)
T PRK11893 141 ----------GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF-IQPASRRNEVISFVKSGLKDLSISRTNFD 209 (511)
T ss_pred ----------CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHHCCCCCcccCCCCCC
Confidence 1679999999999999999999999999999999875422 3577788888999999999999999 899
Q ss_pred CCcccCCcCCCCceeeeeecccchHHHhccccc-------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCC
Q 006368 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (648)
Q Consensus 261 WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~-------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~ 333 (648)
||+|+|++ +++++||||||+++|++.. +++ ++|..||+ .| +|++|+|+++||+++|||++++++.
T Consensus 210 WGipiP~~--~~~~~~vWfda~~~y~s~~-~~p~~~~~~~~~~~~~~~--~D---~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 210 WGIPVPGD--PKHVIYVWFDALTNYLTAL-GYPDDEELLAELFNKYWP--AD---VHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred CCccCCCC--CCceEEEEecCcHHHHhHh-ccccccccchhHHHhcCC--Cc---ceEecccccccchhHHHHHHHhCCC
Confidence 99999987 6999999999999999975 342 35889995 46 7999999999999999999999865
Q ss_pred CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHH
Q 006368 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (648)
Q Consensus 334 ~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~ 413 (648)
++|+++++||||+++|+|||||+||+|++.|+++ .||+|++||||++.+++.+|++|+++.+.+++|+++.+.++|+
T Consensus 282 --~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~-~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~ 358 (511)
T PRK11893 282 --PLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVD-EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNL 358 (511)
T ss_pred --CCCCEEEeeccEEECCeeecccCCcEEcHHHHHH-HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999 7999999999999889899999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006368 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (648)
Q Consensus 414 ~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (648)
++|+.+++.+ .+++.+|... ...+.|+++++.+..+.+.+.++|++|+++.|+..++++++.+|.|++..+||.
T Consensus 359 ~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~ 432 (511)
T PRK11893 359 AQRTLSMIAK----NFDGKVPEPG--ALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHH----hcCCCCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 9999999886 3445455321 234567889999999999999999999999999999999999999999999998
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCC
Q 006368 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNP 573 (648)
Q Consensus 494 l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 573 (648)
+.+++..++.+++.++.++++.++++|+||||++|++||++||.+.+....+.+ . .+..++.|+.|+.+++
T Consensus 433 ~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~ 503 (511)
T PRK11893 433 LAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAA-------L--SWGRLAPGTTLPKPEP 503 (511)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhh-------h--hcccCCCCCCCCCCCC
Confidence 876666788999999999999999999999999999999999975432101111 0 1334567999998999
Q ss_pred CCCCCCh
Q 006368 574 LFKELKD 580 (648)
Q Consensus 574 Lf~~i~~ 580 (648)
||+++++
T Consensus 504 lf~~~~~ 510 (511)
T PRK11893 504 IFPRLEE 510 (511)
T ss_pred CccCCCC
Confidence 9999975
No 12
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.3e-83 Score=754.42 Aligned_cols=504 Identities=19% Similarity=0.257 Sum_probs=422.7
Q ss_pred CCCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----C
Q 006368 11 APPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----N 84 (648)
Q Consensus 11 ~~~~~~~~--~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g 84 (648)
+...|.+. .++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||.||+..+++. |
T Consensus 20 ~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~-~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g 98 (861)
T TIGR00422 20 KSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALN-WSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEG 98 (861)
T ss_pred HCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHH-HHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccC
Confidence 34444442 35677999999999999999999999 56799999999999999999999999999999887754 6
Q ss_pred CCH------------HHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCc
Q 006368 85 CSP------------KEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (648)
Q Consensus 85 ~~~------------~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 150 (648)
+++ .++++++...+++++++||+++|. .+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.|
T Consensus 99 ~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~ 178 (861)
T TIGR00422 99 KTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKL 178 (861)
T ss_pred CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCC
Confidence 665 477899999999999999999984 245999999999999999999999999999999999999
Q ss_pred Cccccccccc----------------------------------------------------------------------
Q 006368 151 KRFLADRLVE---------------------------------------------------------------------- 160 (648)
Q Consensus 151 ~~~l~d~~v~---------------------------------------------------------------------- 160 (648)
+++|+|.+|+
T Consensus 179 ~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~ 258 (861)
T TIGR00422 179 NTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIAD 258 (861)
T ss_pred CCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeec
Confidence 9999997642
Q ss_pred -------cc-----CCCCcccc----------------CCCCCccccccCCC------------------------CCcc
Q 006368 161 -------GT-----CPFEGCNY----------------ESARGDQCENCGKL------------------------LNAT 188 (648)
Q Consensus 161 -------g~-----cp~~~c~~----------------~~~~g~~c~~cg~~------------------------l~~~ 188 (648)
|| ||. |+. -+..|..|+.||.+ ..+.
T Consensus 259 ~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 336 (861)
T TIGR00422 259 EYVDMEFGTGAVKVTPA--HDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPH 336 (861)
T ss_pred CCCCcccCCCceEecCC--CChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeee
Confidence 11 332 221 15678888888875 1223
Q ss_pred ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCc
Q 006368 189 DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268 (648)
Q Consensus 189 el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~ 268 (648)
+...|+|+|||++++.+.++|||++++++++++.++++++.. ..+|++..+...+||+. ++|||||||+.||+|||.|
T Consensus 337 ~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i-~~~P~~~~~~~~~wl~~-l~DW~ISRq~~WG~piP~w 414 (861)
T TIGR00422 337 THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEI-KFVPKRMEKRYLNWLRN-IKDWCISRQLIWGHRIPVW 414 (861)
T ss_pred eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCe-EEEChHHHHHHHHHHhc-cccceeeeecccCCcceEE
Confidence 446799999999999999999999999999999999985432 12588888999999986 9999999999999999985
Q ss_pred CCC-----------------------------CceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccc
Q 006368 269 RFK-----------------------------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 269 ~~~-----------------------------~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi 316 (648)
.++ .+|+||||||.++|++.. +|+ .+|+.||| .| +|++|+||
T Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~-g~p~~~~~~~~~~P--~d---~~~~G~Di 488 (861)
T TIGR00422 415 YCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTL-GWPDETKDLKKFYP--TD---LLVTGYDI 488 (861)
T ss_pred EECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHh-CCCCChHHHhhcCC--cc---eeecchhh
Confidence 321 368889999999999875 676 36888995 46 89999999
Q ss_pred cchhHhHHHHHhhhcCCCcccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 317 VPFHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 317 ~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
++||.++|+++.+++... .|++++++|||++. +|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|++
T Consensus 489 i~fw~~~~~~~~~~~~~~-~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~~~~~~d~~f~~ 566 (861)
T TIGR00422 489 IFFWVARMIFRSLALTGQ-VPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-KYGADALRFTLASLVTPGDDINFDW 566 (861)
T ss_pred hhHHHHHHHHHHHHhcCC-CchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceecH
Confidence 999999999988877433 34599999999985 99999999999999999998 7999999999998888789999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 006368 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (648)
Q Consensus 396 ~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i 475 (648)
+.+.+. .+++++|+| +.|...+..+ .+++ ++... ......|+++++.++.+++.+.++|++|+++.|++.+
T Consensus 567 ~~~~~~--~~~~nkl~N-~~rf~~~~~~----~~~~-~~~~~-~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l 637 (861)
T TIGR00422 567 KRVESA--RNFLNKLWN-ASRFVLMNLS----DDLE-LSGGE-EKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKAL 637 (861)
T ss_pred HHHHHH--HHHHHHHHH-HHHHHHhccc----cccc-ccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999876 559999999 4555444332 2221 22111 1235678999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 476 MSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
++++ ..+|.|++..+||.... +......++.++.++++.+++||+||||++|++||++|+.
T Consensus 638 ~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~ 700 (861)
T TIGR00422 638 YEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE 700 (861)
T ss_pred HHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc
Confidence 9996 78999999999998643 3345567888999999999999999999999999999984
No 13
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-81 Score=729.10 Aligned_cols=493 Identities=22% Similarity=0.291 Sum_probs=410.6
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCCHH----------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSPK---------- 88 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~~~---------- 88 (648)
++++|+|++|+|||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|++. |++++
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~-~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~ 114 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFS-YTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIEL 114 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHh-HHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHH
Confidence 4678999999999999999999998 67899999999999999999999999999999999984 88776
Q ss_pred --HHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc----
Q 006368 89 --EICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE---- 160 (648)
Q Consensus 89 --e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~---- 160 (648)
++++++.+.+++++++||+++| .+++|++|.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|++|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~ 194 (800)
T PRK13208 115 CRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRER 194 (800)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccc
Confidence 5999999999999999999988 78999999999999999999999999999999999999999999999763
Q ss_pred --------------------ccCCC--Ccccc---------------------------------------------CCC
Q 006368 161 --------------------GTCPF--EGCNY---------------------------------------------ESA 173 (648)
Q Consensus 161 --------------------g~cp~--~~c~~---------------------------------------------~~~ 173 (648)
.|||. +||.+ .-.
T Consensus 195 ~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p 274 (800)
T PRK13208 195 EGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT 274 (800)
T ss_pred cceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCC
Confidence 46774 23322 012
Q ss_pred CCcccc-----------------------ccC----------------------CCCCcccc--CCCcCCCCCCCcEEee
Q 006368 174 RGDQCE-----------------------NCG----------------------KLLNATDL--KDPKCKVCRNAPQIRD 206 (648)
Q Consensus 174 ~g~~c~-----------------------~cg----------------------~~l~~~el--~~~~~~~~g~~~~~~~ 206 (648)
.|+.|| +|| ..+..+++ ..|+|+|||++++.+.
T Consensus 275 ~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 354 (800)
T PRK13208 275 FGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILV 354 (800)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEec
Confidence 445555 232 12222222 2499999999999999
Q ss_pred ccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC----------------
Q 006368 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF---------------- 270 (648)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~---------------- 270 (648)
++|||++++++++++.+++++.. ..|++.++++.+||++..+|||||||+.||+|||.+.+
T Consensus 355 ~~qwfl~~~~~~~~~~~~~~~~~---~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~ 431 (800)
T PRK13208 355 TRQWFIKVLDLKEELLERGKEIN---WYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPV 431 (800)
T ss_pred cceeeEeCHHHHHHHHHhhcCcE---EECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhcc
Confidence 99999999999999999998754 25788888999999974449999999999999995211
Q ss_pred ----------------------CCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHH
Q 006368 271 ----------------------KEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (648)
Q Consensus 271 ----------------------~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~p 325 (648)
+.+|+|||||+.+.+++.. +|+ ..|..|| |.| +++.|+||++||..++.
T Consensus 432 ~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~-~~~~~~~~~~~~~--P~d---~~~~G~Di~~~w~~~~l 505 (800)
T PRK13208 432 DPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVT-GWERDEDLFEKVF--PMD---LRPQGHDIIRTWLFYTI 505 (800)
T ss_pred CchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHh-CCCCChhhhhhcC--Cce---EEEeecchhhhHHHHHH
Confidence 1369999999999888653 664 3588888 456 89999999999988876
Q ss_pred HHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhH
Q 006368 326 STLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (648)
Q Consensus 326 a~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 404 (648)
++-+++... .+++++++|||++ .+|+|||||+||+|+|.++++ .||+|++||||+ .++..+|++|+++.+.. ++
T Consensus 506 ~~~~~~~~~-~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~--~~ 580 (800)
T PRK13208 506 LRAYLLTGK-LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLE-KYGADAVRYWAA-SARLGSDTPFDEKQVKI--GR 580 (800)
T ss_pred HHHHHhcCC-CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHH-HcCccHHHHHHh-cCCCCCCceecHHHHHH--HH
Confidence 544333222 2458999999997 699999999999999999998 799999999999 68888999999999875 58
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HH
Q 006368 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EG 482 (648)
Q Consensus 405 ~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~--~~ 482 (648)
+++++++|+++++..+ .+ .+..+.. ......|+++++.++.+++++.++|++|+++.|++.+++++. .+
T Consensus 581 ~~l~kl~N~~r~~~~~-~~------~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~ 651 (800)
T PRK13208 581 RLLTKLWNASRFVLHF-SA------DPEPDKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFC 651 (800)
T ss_pred HHHHHHHHHHHHHHhc-cc------ccccCcc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 9999999998776532 21 0111111 123467899999999999999999999999999999999985 59
Q ss_pred HHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 483 NAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 483 N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
|.|++..+||............++.++.++++.+++||+||||++|++||++|+
T Consensus 652 n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 652 DDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 999999999875433223356778899999999999999999999999999998
No 14
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-80 Score=731.23 Aligned_cols=494 Identities=19% Similarity=0.266 Sum_probs=403.2
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-----CCC--------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-----NCS-------- 86 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-----g~~-------- 86 (648)
++++|+|+.|||||||.+||||+++. +.+||++||+||+||+|+|++|+|+||.+++..+++. |.+
T Consensus 46 ~~~~f~i~~pPP~~nG~lHiGH~~~~-~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~ 124 (1052)
T PRK14900 46 TRPPFSIVLPPPNVTGSLHLGHALTA-TLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREA 124 (1052)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHhh-HHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHH
Confidence 46679999999999999999999994 6699999999999999999999999999999877652 333
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc
Q 006368 87 ----PKEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (648)
Q Consensus 87 ----~~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (648)
+.++++++...++++|++||+++|. -+.|.++.|.+.++++|.+|+++|+||++.+.++||+.|++.|++.+|+
T Consensus 125 f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 125 FLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 3457788999999999999999884 3558999999999999999999999999999999999999999999886
Q ss_pred cc--------------------------CCC--Ccccc------------------------------------C-----
Q 006368 161 GT--------------------------CPF--EGCNY------------------------------------E----- 171 (648)
Q Consensus 161 g~--------------------------cp~--~~c~~------------------------------------~----- 171 (648)
.. .|+ +||.+ +
T Consensus 205 ~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GT 284 (1052)
T PRK14900 205 HEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGT 284 (1052)
T ss_pred ccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCC
Confidence 31 121 01000 0
Q ss_pred ----------------------------CCCCccccccCCCC----------------------C--ccccCCCcCCCCC
Q 006368 172 ----------------------------SARGDQCENCGKLL----------------------N--ATDLKDPKCKVCR 199 (648)
Q Consensus 172 ----------------------------~~~g~~c~~cg~~l----------------------~--~~el~~~~~~~~g 199 (648)
+..|...+.+|.+- . +.+...|+|+|||
T Consensus 285 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~ 364 (1052)
T PRK14900 285 GAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSA 364 (1052)
T ss_pred CeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCC
Confidence 11111111122110 0 0122468999999
Q ss_pred CCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC---------
Q 006368 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF--------- 270 (648)
Q Consensus 200 ~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~--------- 270 (648)
++++.+.++||||++++|++++.+++++.+. ..+|.+..+.+.+||+ +++|||||||+.||+|||.|.+
T Consensus 365 ~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~ 442 (1052)
T PRK14900 365 TILEPLLSDQWYVRIEPLARPAIEAVEQGRT-RFIPEQWTNTYMAWMR-NIHDWCISRQLWWGHQIPAWYCPDGHVTVAR 442 (1052)
T ss_pred ceEEEEeccceeeehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEeecCCCceeCeEEcCCCcEEecc
Confidence 9999999999999999999999999986442 2358888889999998 4999999999999999998631
Q ss_pred ----------------CCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhc
Q 006368 271 ----------------KEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (648)
Q Consensus 271 ----------------~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~ 331 (648)
+.+|+||||||+++|++.+ +|+ .+|..||| .| +|++|+||++| |+++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~-g~p~~~~~~~~~~P--~d---~~~~G~Dii~~----W~a~~l~~ 512 (1052)
T PRK14900 443 ETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTM-GWPEQTDTLRTFYP--TS---VMETGHDIIFF----WVARMMMM 512 (1052)
T ss_pred cccccccccCccceecCCceEEEEEcCChHHHHHH-cCCCchHHHHhhCC--ch---hhcccccHHhH----HHHHHHHH
Confidence 3589999999999999875 675 35888995 46 79999999975 77777766
Q ss_pred CCC---cccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHH
Q 006368 332 GEN---WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELL 407 (648)
Q Consensus 332 g~~---~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 407 (648)
|+. ..|++.+++||||+. +|+|||||+||+|+|.++++ .||+|+|||||++..+.++|++|+++.+... ++++
T Consensus 513 ~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe-~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~ 589 (1052)
T PRK14900 513 GLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITE-QYGADALRFTLAALTAQGRDIKLAKERIEGY--RAFA 589 (1052)
T ss_pred HHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHH-HhCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHH
Confidence 542 234599999999986 99999999999999999998 7999999999999889999999999999654 5799
Q ss_pred HHHhHHHHHHHHhhhCCCCCCC--CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGY--GSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGN 483 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~--~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N 483 (648)
++++| ++|+..+..+ .+ ++..+.. ......|+++++.++.++..+.++|++|+|+.|++.+++|+ ..+|
T Consensus 590 nkl~N-~~R~~~~~~~----~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n 662 (1052)
T PRK14900 590 NKLWN-ASRFALMNLS----GYQERGEDPAR--LARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCD 662 (1052)
T ss_pred HHHHH-HHHHHHHhhh----ccCcccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhH
Confidence 99999 5676655433 22 2222221 12346789999999999999999999999999999999997 5899
Q ss_pred HHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.||+..+|| +.+.+......++.++.++++.+++||+||||++|++||++|+.
T Consensus 663 ~Yie~~k~~-l~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 663 WYIELAKEA-LASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHhccHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999886 44444445556778888999999999999999999999999974
No 15
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-78 Score=711.43 Aligned_cols=489 Identities=19% Similarity=0.240 Sum_probs=401.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH----cCCCHHH-------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DNCSPKE------- 89 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----~g~~~~e------- 89 (648)
+++|+|++|||||||.+|||||++ ++.+|+++||+||+|++|+|++|+|+||.+++.+.++ +|+++.+
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~-~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~ 113 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALN-NTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFL 113 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHH
Confidence 456999999999999999999999 4669999999999999999999999999987666543 4776654
Q ss_pred -----HHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc-
Q 006368 90 -----ICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG- 161 (648)
Q Consensus 90 -----~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g- 161 (648)
+++++...+++++++||+++|. .+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|+|.+|+.
T Consensus 114 ~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~ 193 (874)
T PRK05729 114 EKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK 193 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccc
Confidence 5889999999999999999983 35699999999999999999999999999999999999999999998861
Q ss_pred -----------------------------------------------------cCCCCcccc------------------
Q 006368 162 -----------------------------------------------------TCPFEGCNY------------------ 170 (648)
Q Consensus 162 -----------------------------------------------------~cp~~~c~~------------------ 170 (648)
.||. |+.
T Consensus 194 ~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~--~~~~ipii~~~~V~~~~GTG~ 271 (874)
T PRK05729 194 EVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPL--VGREIPIIADEYVDPEFGTGA 271 (874)
T ss_pred cccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCC--CCCeeeEecCccCCCCCCCcc
Confidence 1332 221
Q ss_pred -------------------------CCCCCccccccCCCC------------------------CccccCCCcCCCCCCC
Q 006368 171 -------------------------ESARGDQCENCGKLL------------------------NATDLKDPKCKVCRNA 201 (648)
Q Consensus 171 -------------------------~~~~g~~c~~cg~~l------------------------~~~el~~~~~~~~g~~ 201 (648)
-+..|..++.||..- .+.+...|+|+|||++
T Consensus 272 V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~ 351 (874)
T PRK05729 272 VKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVV 351 (874)
T ss_pred eEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCce
Confidence 034566666666421 1113357999999999
Q ss_pred cEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCC---------
Q 006368 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--------- 272 (648)
Q Consensus 202 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~--------- 272 (648)
++.+.++|||++++++++++.+++++... ..+|++..+...+||++ ++|||||||+.||+|||.|.+++
T Consensus 352 i~~~~~~QWFi~~~~~~~~~~~~v~~~~i-~~~P~~~~~~~~~wl~~-l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~ 429 (874)
T PRK05729 352 IEPYLSDQWFVKMKPLAKPALEAVENGEI-KFVPERWEKTYFHWMEN-IQDWCISRQLWWGHRIPAWYDEDGEVYVGREE 429 (874)
T ss_pred EEEEecCcceEehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHhc-CccceeeeecccCCcccEEEeCCCcEEeCCcc
Confidence 99999999999999999999999975432 23688889999999986 99999999999999999754332
Q ss_pred -------------ceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC--
Q 006368 273 -------------KVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN-- 334 (648)
Q Consensus 273 -------------~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~-- 334 (648)
.|++||||+.+.|++.+ +|+ .+|..||| .| +|++|+||++| |++++++.|..
T Consensus 430 ~~~~~~~~~~~~~DvlDtWfsS~l~~~~~l-gwp~~~~~~~~~~P--~d---~~~~G~Dii~~----W~a~~~~~~~~~~ 499 (874)
T PRK05729 430 PEAREKALLTQDEDVLDTWFSSALWPFSTL-GWPEKTEDLKRFYP--TS---VLVTGFDIIFF----WVARMIMMGLHFT 499 (874)
T ss_pred cccccccCeEeCCceecceecCCccHHHHh-CCCCCcHHHHhcCC--cc---cccccccccch----HHHHHHHHHHHhc
Confidence 35556777788887765 775 35888994 56 89999999997 66665554432
Q ss_pred cc-cCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhH
Q 006368 335 WT-LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (648)
Q Consensus 335 ~~-~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N 412 (648)
.. |++.+++||++. .+|+|||||+||+|+|.++++ .||+|+|||||++.++.++|++|+++.+... .+++++++|
T Consensus 500 ~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~-~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~--~~~~nkl~N 576 (874)
T PRK05729 500 GQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLID-KYGADALRFTLAALASPGRDIRFDEERVEGY--RNFANKLWN 576 (874)
T ss_pred CCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceeCHHHHHHH--HHHHHHHHH
Confidence 12 349999999998 799999999999999999999 7999999999998878899999999999876 569999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhh
Q 006368 413 FINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ 490 (648)
Q Consensus 413 ~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~ 490 (648)
..+.+...+.+ ...+..+.. ......|++++..++.+++.+.++|++|+++.|++.+++++ ..+|.|++..+
T Consensus 577 ~~Rf~~~~~~~----~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k 650 (874)
T PRK05729 577 ASRFVLMNLEG----ADVGELPDP--EELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAK 650 (874)
T ss_pred HHHHHHHhccc----CCccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554433232 222222211 12356789999999999999999999999999999999998 57999999999
Q ss_pred hhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 491 FWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 491 pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
||.. . . ....++.++.++++.++.||+||||++|++||++|+-
T Consensus 651 ~~l~--~-~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 651 PVLQ--E-A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHhh--h-h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 9943 2 2 2456788899999999999999999999999999974
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-76 Score=695.68 Aligned_cols=498 Identities=18% Similarity=0.226 Sum_probs=404.3
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----CCCH--------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----NCSP-------- 87 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g~~~-------- 87 (648)
++++|+|++|||||||.+|||||++ ++.+|+++||+||+||+|+|++|+|+||.+++.+.++. |+++
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~-~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f 164 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMF-VTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEF 164 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHH-HHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHH
Confidence 5667999999999999999999998 56799999999999999999999999999998866543 6543
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc
Q 006368 88 ----KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG 161 (648)
Q Consensus 88 ----~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g 161 (648)
.++++++...+++++++||+++| ..+.|++|.|.+.++++|.+|+++|+||++.+.++||+.|++.|++.+|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey 244 (958)
T PLN02943 165 TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 244 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhc
Confidence 45668889999999999999887 467799999999999999999999999999999999999999999998862
Q ss_pred --------------------------cCCC--Ccc--------------------------ccC----------------
Q 006368 162 --------------------------TCPF--EGC--------------------------NYE---------------- 171 (648)
Q Consensus 162 --------------------------~cp~--~~c--------------------------~~~---------------- 171 (648)
|.|. +|| +-+
T Consensus 245 ~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG 324 (958)
T PLN02943 245 SEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTG 324 (958)
T ss_pred ccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCc
Confidence 1222 000 000
Q ss_pred ---------------------------CCCCccccccCCC--------------------CCccccCCCcCCCCCCCcEE
Q 006368 172 ---------------------------SARGDQCENCGKL--------------------LNATDLKDPKCKVCRNAPQI 204 (648)
Q Consensus 172 ---------------------------~~~g~~c~~cg~~--------------------l~~~el~~~~~~~~g~~~~~ 204 (648)
+..|...+.+|.. ..+.++..|+|++||++++.
T Consensus 325 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~ 404 (958)
T PLN02943 325 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 404 (958)
T ss_pred eEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEE
Confidence 2233333334432 11223457999999999999
Q ss_pred eeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC--------------
Q 006368 205 RDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF-------------- 270 (648)
Q Consensus 205 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~-------------- 270 (648)
+.++|||++++++++.+.+++++.+. ..+|.+..+...+||+ +++|||||||+.||+|||.|..
T Consensus 405 ~~~~QWFi~~~~l~~~~l~~v~~~~i-~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~ 482 (958)
T PLN02943 405 LVSKQWFVTMEPLAEKALKAVENGEL-TIIPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARS 482 (958)
T ss_pred EeccceeEEHHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEEecCCCCccCceeccccCCCceEEecCc
Confidence 99999999999999999999975432 2357788888999998 6999999999999999997531
Q ss_pred --------------------CCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHH
Q 006368 271 --------------------KEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPS 326 (648)
Q Consensus 271 --------------------~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa 326 (648)
+.+|+||||||.+.|++.+ +|+ ++|+.||| .| +++.|+||++| |++
T Consensus 483 ~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~l-gwp~~~~~~~~~~yP--~d---l~~~G~Dii~f----W~a 552 (958)
T PLN02943 483 AEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSAEDFKKFYP--TT---VLETGHDILFF----WVA 552 (958)
T ss_pred HHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhc-CCCccChHHHhccCC--Ce---EEEEeehHHHH----HHH
Confidence 3589999999999999875 575 36888894 46 79999999975 888
Q ss_pred HhhhcCCCc--c-cCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 327 TLLGTGENW--T-LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 327 ~l~a~g~~~--~-~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.+++.|... . |++++++||+++ .+|+|||||+||+|+|.++++ .||+|++|||+++. +.++|++|+++.+.+
T Consensus 553 ~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~-~~~~d~~fs~~~l~~-- 628 (958)
T PLN02943 553 RMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIK-EFGTDALRFTLALG-TAGQDLNLSTERLTS-- 628 (958)
T ss_pred HHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHH-hcCChHHHHHHHhC-CCCCCccccHHHHHH--
Confidence 765555431 2 458999999996 799999999999999999998 79999999999975 458999999999987
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCC---------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPG---------QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLK 473 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~---------~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~ 473 (648)
+++++++|+|+.+++...+..... ..+++..+ .......|+++++.++.+++++.++|++|+|+.|++
T Consensus 629 ~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~ 705 (958)
T PLN02943 629 NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEES---LLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGR 705 (958)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccccccCCcccc---ccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Confidence 489999999988877654421000 01221111 012346789999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 474 TAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 474 ~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.+++++ ..+|.|++..+||...+++......+..++..+++.+..||+||||++|++||++|+.
T Consensus 706 ~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 706 EIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC
Confidence 999995 7899999999998543333334556778888999999999999999999999999973
No 17
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.2e-77 Score=629.45 Aligned_cols=316 Identities=48% Similarity=0.895 Sum_probs=290.3
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+++||+|+|||||.+||||+++. +.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++|+.+.+.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~-~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGT-VLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHH-HHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999995 66899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccC
Q 006368 103 KWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCG 182 (648)
Q Consensus 103 ~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg 182 (648)
++|||++|.|++|+++.|...++++|++|.++|++|++++.++||+.|++||+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999975
Q ss_pred CCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeecc-CC
Q 006368 183 KLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-KW 261 (648)
Q Consensus 183 ~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~-~W 261 (648)
++++++||||+|++|++.|++++++++. ..||+++++.+.+||+++++||||||++ .|
T Consensus 133 --------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~-~~~p~~~~~~~~~~l~~~l~d~~isR~~~~W 191 (319)
T cd00814 133 --------------------EWREEEHYFFRLSKFQDRLLEWLEKNPD-FIWPENARNEVLSWLKEGLKDLSITRDLFDW 191 (319)
T ss_pred --------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCc-cCCCHHHHHHHHHHHhCCCcccCCCccCccc
Confidence 4678999999999999999999998764 2589999999999999999999999998 99
Q ss_pred CcccCCcCCCCceeeeeecccchHHHhccccchHHH--hhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCc
Q 006368 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWE--QWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK 339 (648)
Q Consensus 262 Gi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~--~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~ 339 (648)
|||+|.+ +++++||||||+++|+|++..+..... .||.. ....++||+|+||++||+++||||++++|. ++|+
T Consensus 192 Gipvp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~-~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~--~~~~ 266 (319)
T cd00814 192 GIPVPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD-GWPELVHFIGKDIIRFHAIYWPAMLLGAGL--PLPT 266 (319)
T ss_pred CeeCCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc-CCCceEEEEeechhhhhHHHHHHHHHhCCC--CCCc
Confidence 9999987 799999999999999998754432111 23332 223459999999999999999999999984 5889
Q ss_pred eEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 340 TISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 340 ~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
.+++|||++++|+|||||+||+|++.++++ .|++|++||||++..|.++|.||
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~-~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLE-RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999998 79999999999999999999987
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=4.2e-76 Score=691.84 Aligned_cols=493 Identities=20% Similarity=0.259 Sum_probs=404.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCC------H----
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS------P---- 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~------~---- 87 (648)
.++++|+|++|||||||.+||||+++ ++.+||++||+||+||+|+|++|+|+||+||+.+|+++ |+. +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~-~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~ 111 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALN-KILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIE 111 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHH-HHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHH
Confidence 35677999999999999999999999 56799999999999999999999999999999999876 654 3
Q ss_pred ------HHHHHHHHHHHHHHHhhcCccc--ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 88 ------KEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~i~~--D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
++++.++.+.+++++++||++. +..+.|++|.|.+.++++|.+|+++|+||++...++||+.|++.|++.+|
T Consensus 112 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev 191 (861)
T TIGR00392 112 EFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEV 191 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHH
Confidence 4788899999999999999966 57889999999999999999999999999999999999999999999888
Q ss_pred ccc-------CC------------------------------C--Ccccc----CC------------------------
Q 006368 160 EGT-------CP------------------------------F--EGCNY----ES------------------------ 172 (648)
Q Consensus 160 ~g~-------cp------------------------------~--~~c~~----~~------------------------ 172 (648)
+.. .| + +||.+ ++
T Consensus 192 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~ 271 (861)
T TIGR00392 192 EYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEK 271 (861)
T ss_pred hcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHH
Confidence 521 11 1 00000 00
Q ss_pred ----------------------------CCCccc------c---------------------------------------
Q 006368 173 ----------------------------ARGDQC------E--------------------------------------- 179 (648)
Q Consensus 173 ----------------------------~~g~~c------~--------------------------------------- 179 (648)
-.+... .
T Consensus 272 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~ 351 (861)
T TIGR00392 272 LYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVL 351 (861)
T ss_pred HHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcc
Confidence 000000 0
Q ss_pred ----ccCCCCC--c-------c-----------------------------ccCCCcCCCCCCCcEEeeccceeeechhh
Q 006368 180 ----NCGKLLN--A-------T-----------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPAL 217 (648)
Q Consensus 180 ----~cg~~l~--~-------~-----------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~ 217 (648)
..|.+.+ + . ....|+|+|||++++.+.++|||++++++
T Consensus 352 ~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~ 431 (861)
T TIGR00392 352 SPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDI 431 (861)
T ss_pred cccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHH
Confidence 0011000 0 0 01248999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC---------------------------
Q 006368 218 RNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF--------------------------- 270 (648)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~--------------------------- 270 (648)
+++++++++++.. .|....+++.+||+ +++|||||||+.||+|+|.+.+
T Consensus 432 k~~~l~~~~~i~~---~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w 507 (861)
T TIGR00392 432 KDQMLEQIKKVNW---VPEWGEGRFGNWLE-NRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAW 507 (861)
T ss_pred HHHHHHHhCCcEE---ECchHHHHHHHHHh-CCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccc
Confidence 9999999987653 47778888999999 4899999999999999997321
Q ss_pred ------------------------CCceeeeeecccchHHHhccccch---HHHhhcCCCCCcceEEEEeccccc--hhH
Q 006368 271 ------------------------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVP--FHT 321 (648)
Q Consensus 271 ------------------------~~~v~yVWfDa~~~yis~~~~~~~---~~~~~w~~p~~~~~i~~~GkDi~~--fH~ 321 (648)
+.+|+||||||+++|++.. +|+. +|..||| .| +|++|+||++ ||+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~-~~~~~~~~f~~~~P--~d---~~i~G~Di~r~Wf~~ 581 (861)
T TIGR00392 508 FEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASI-HYPFENEKFKEVFP--AD---FILEGSDQTRGWFYS 581 (861)
T ss_pred cccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhc-CCCCCcchhhccCC--ce---EEEEecchhccHHHH
Confidence 2349999999999999875 4643 5888894 56 8999999998 899
Q ss_pred hHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHH
Q 006368 322 VMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQA 400 (648)
Q Consensus 322 i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~ 400 (648)
.+|+++++. |. .||+++++|||++ .+|+|||||+||+|+|.++++ .||+|+||||+++. +.++|++|+++.+..
T Consensus 582 ~~~~~~~~~-~~--~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~-~yGaDalR~~ll~~-~~~~D~~fs~~~l~~ 656 (861)
T TIGR00392 582 SLAIGTALF-GQ--APYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVIN-KYGADILRLYVASS-DPWEDLRFSDEILKQ 656 (861)
T ss_pred HHHHHHHHc-CC--CChHhhEecceEECCCCCCcCCCCCCCCCHHHHHH-HcCHHHHHHHHHhC-CCCCCceECHHHHHH
Confidence 999998764 43 4789999999998 599999999999999999999 79999999999987 889999999999976
Q ss_pred HhhHHHHHHHhHHHHHHH--HhhhCCCCCCCCC--CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 006368 401 KSNNELLNNLGNFINRVL--SFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (648)
Q Consensus 401 ~~n~~l~~~l~N~~~R~~--~~~~k~~~~~~~~--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~ 476 (648)
. ++.+.+.++|+++++. +.+.+ ++. ..+.. ......|++++..++.+.+.+.++|++|+++.|++.++
T Consensus 657 ~-~~~~~n~l~N~~~~~~~~~~l~~-----~~~~~~~~~~--~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~ 728 (861)
T TIGR00392 657 V-VEKYRKIRWNTYRFLLTYANLDK-----FDPLFNSVAV--EKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQ 728 (861)
T ss_pred H-HHHHHHHHHHHHHHHHHHhcccc-----CCcccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4 4668999999999887 55443 221 11111 12346789999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHhhhh--hhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 477 SISSE--GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 477 ~l~~~--~N~yi~~~~p--w~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+++.. +|.|++..+| |...+.+..+ ++..++..+++.++.+|+||||++|++||++|+.
T Consensus 729 ~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~--~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~ 791 (861)
T TIGR00392 729 DFIVEELSNWYIRIIRDRLYCEAKDNDKR--AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPG 791 (861)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccc
Confidence 99865 9999998876 8776543222 5566777889999999999999999999999975
No 19
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.1e-75 Score=688.46 Aligned_cols=498 Identities=18% Similarity=0.266 Sum_probs=395.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCC-----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS----------- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~----------- 86 (648)
.++++|++++|||||||.|||||+++ ++.+|+++||+||+||+|.|++|+|+||+||+..++++ |+.
T Consensus 35 ~~~~~f~~~dgPPyanG~~HiGH~~~-~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~ 113 (1159)
T PLN02882 35 EGLPEYIFYDGPPFATGLPHYGHILA-GTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGID 113 (1159)
T ss_pred CCCCCEEEeCCCCCCCCcchhhHHHH-HHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHH
Confidence 35677999999999999999999999 56699999999999999999999999999999999644 653
Q ss_pred -----HHHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 87 -----PKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 87 -----~~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
|++++.+|...+++++++|| +++|++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++.|++.++
T Consensus 114 ~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~ 193 (1159)
T PLN02882 114 KYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEA 193 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhh
Confidence 56788899999999999999 56678999999999999999999999999999999999999999999997555
Q ss_pred c-------c----------------------cCCC--Ccc---------cc-----------------------------
Q 006368 160 E-------G----------------------TCPF--EGC---------NY----------------------------- 170 (648)
Q Consensus 160 ~-------g----------------------~cp~--~~c---------~~----------------------------- 170 (648)
+ + |.|+ ++| .|
T Consensus 194 ~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~ 273 (1159)
T PLN02882 194 GLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKS 273 (1159)
T ss_pred hhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcc
Confidence 2 0 2332 110 00
Q ss_pred ------------------------------------------C---------------------CCCC------------
Q 006368 171 ------------------------------------------E---------------------SARG------------ 175 (648)
Q Consensus 171 ------------------------------------------~---------------------~~~g------------ 175 (648)
. ++.|
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl 353 (1159)
T PLN02882 274 KKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGI 353 (1159)
T ss_pred cccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCC
Confidence 0 0000
Q ss_pred ---------------ccccc----------------------cCCCCCcccc--CCCcCCCCCCCcEEeeccceeeechh
Q 006368 176 ---------------DQCEN----------------------CGKLLNATDL--KDPKCKVCRNAPQIRDTNHLFLDLPA 216 (648)
Q Consensus 176 ---------------~~c~~----------------------cg~~l~~~el--~~~~~~~~g~~~~~~~~~~~f~~l~~ 216 (648)
...+. +|.++...++ ..|+|||||+|++++.++|||+++++
T Consensus 354 ~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~ 433 (1159)
T PLN02882 354 IEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEE 433 (1159)
T ss_pred CccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHH
Confidence 00000 0111111111 25999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCChHH-HHHHHHHHhcccccceeeeccCCCcccCCcCCC------------------------
Q 006368 217 LRNKLEEYINNMSVAGSWSQNA-IQATHAWLKEGLKVRCITRDLKWGVPVPLERFK------------------------ 271 (648)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~------------------------ 271 (648)
+++++.+..++..+. |+++ .+++.+||++ ++||||||++.||+|+|.|.++
T Consensus 434 ~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~~-~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~d 509 (1159)
T PLN02882 434 IKDRLLENNKQTYWV---PDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTD 509 (1159)
T ss_pred HHHHHHHhhCCcEEE---CCcchhhHHHHHHhc-CcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhh
Confidence 999999977665432 5666 3688999987 8999999999999999975210
Q ss_pred -------------------------CceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHh
Q 006368 272 -------------------------EKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTV 322 (648)
Q Consensus 272 -------------------------~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i 322 (648)
..|++||||+.+...+. .+|| +.|..+| |+| +|+.|+||+++
T Consensus 510 lh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~-~~~p~e~~~~f~~~~--PaD---~i~eG~Dq~Rg--- 580 (1159)
T PLN02882 510 LHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAY-IHYPFENKELFEKNF--PAD---FVAEGLDQTRG--- 580 (1159)
T ss_pred ccccchhhhccccccCCchhceEecCceeeeeeccCccHHHH-cCCcccChhHhhccC--Cce---EEEEecchhhh---
Confidence 16899999987776654 3675 2467778 456 89999999997
Q ss_pred HHHHHhhhcC---CCcccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcC-CCCCCccccHHH
Q 006368 323 MFPSTLLGTG---ENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR-PEVSDTLFTWAD 397 (648)
Q Consensus 323 ~~pa~l~a~g---~~~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~-~~~~d~~fs~~~ 397 (648)
|+..++.++ .+.++|+++++|||++. +|+|||||+||+|+|.++++ +||+|+|||||++.. +++.|++|+++.
T Consensus 581 -Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~-~YGADaLR~~Ll~s~~~~~~d~~fs~~~ 658 (1159)
T PLN02882 581 -WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVID-KYGADALRLYLINSPVVRAEPLRFKEEG 658 (1159)
T ss_pred -HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHH-HhCcHHHHHHHHhCCcccCcCcccCHHH
Confidence 555444433 13468899999999996 89999999999999999999 799999999999743 247899999999
Q ss_pred HHHHhhHHHHHHHhH----HHHHHHHhhhCCCCCCCCCCCCCCC-C--CCChHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 006368 398 LQAKSNNELLNNLGN----FINRVLSFIAKPPGQGYGSIVPDAN-G--AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQ 470 (648)
Q Consensus 398 ~~~~~n~~l~~~l~N----~~~R~~~~~~k~~~~~~~~~~p~~~-~--~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~ 470 (648)
+.+..+ +..+++.| ++.++..+..+ ++++..|... . .....+|+++++.++.+.+.+.++|++|+++.
T Consensus 659 v~~~~~-~~l~kl~Na~rfl~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~ 733 (1159)
T PLN02882 659 VFGVVK-DVFLPWYNAYRFLVQNAKRLEVE----GGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYT 733 (1159)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhhhhhhhc----cccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 887543 34444455 55554444333 3444444311 0 12356899999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 471 GLKTAMSISS-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 471 al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|++.|++++. .+|+||+..+||.+.+.+...+.++++++.++++.++.+|+||||++|++||++|+.
T Consensus 734 A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 734 VVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 9999999996 699999999999887655566788999999999999999999999999999999974
No 20
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-75 Score=685.90 Aligned_cols=497 Identities=21% Similarity=0.317 Sum_probs=395.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCC-----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS----------- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~----------- 86 (648)
.++++|+|++|||||||.|||||+++ ++.+|+++||+||+||+|.+++|+|+||+||+..++++ |++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~-~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~ 116 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLT-RTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIE 116 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHh-hHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHH
Confidence 46678999999999999999999999 45699999999999999999999999999999999875 654
Q ss_pred -----HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 87 -----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 87 -----~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
|.+++.++.+.+++++++||++.| +.+.|++|.|.+.++++|.+|+++|+||++...++||+.|++.|++.+|
T Consensus 117 ~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev 196 (975)
T PRK06039 117 KFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEV 196 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHH
Confidence 678999999999999999997664 6788999999999999999999999999999999999999999999988
Q ss_pred cc----------------------------cCCC--Ccc-------------------cc--------------------
Q 006368 160 EG----------------------------TCPF--EGC-------------------NY-------------------- 170 (648)
Q Consensus 160 ~g----------------------------~cp~--~~c-------------------~~-------------------- 170 (648)
++ |.|+ +|| .+
T Consensus 197 ~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~ 276 (975)
T PRK06039 197 AQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVET 276 (975)
T ss_pred hhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEee
Confidence 62 1121 111 00
Q ss_pred ---CC------------------------------CCCc----ccc----------------------ccCCCCCc-c--
Q 006368 171 ---ES------------------------------ARGD----QCE----------------------NCGKLLNA-T-- 188 (648)
Q Consensus 171 ---~~------------------------------~~g~----~c~----------------------~cg~~l~~-~-- 188 (648)
.+ ..|. .|+ .-|++.+. .
T Consensus 277 ~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~ 356 (975)
T PRK06039 277 FKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDY 356 (975)
T ss_pred ecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccc
Confidence 00 0000 000 00111000 0
Q ss_pred ----------------------------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHH
Q 006368 189 ----------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ 240 (648)
Q Consensus 189 ----------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (648)
....|+|+|||++++++.++|||++++++++++.+++++... .|+..++
T Consensus 357 ~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~---~P~~~~~ 433 (975)
T PRK06039 357 AGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINW---YPEHIKD 433 (975)
T ss_pred cCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEE---ECcccch
Confidence 113689999999999999999999999999999999977543 3566666
Q ss_pred -HHHHHHhcccccceeeeccCCCcccCCcCC------------------------------------------------C
Q 006368 241 -ATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------------------------------------K 271 (648)
Q Consensus 241 -~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------------------------------------~ 271 (648)
++.+||+. ++||||||++.||+|+|.|.+ +
T Consensus 434 ~~~~~wl~~-l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~ 512 (975)
T PRK06039 434 GRFGKWLEN-ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRV 512 (975)
T ss_pred hhHHHHHhc-CccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEec
Confidence 78899985 999999999999999997421 1
Q ss_pred CceeeeeecccchHHHhccccch----HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcC---CCcccCceEEee
Q 006368 272 EKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTG---ENWTLMKTISVT 344 (648)
Q Consensus 272 ~~v~yVWfDa~~~yis~~~~~~~----~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g---~~~~~p~~~~~h 344 (648)
.+|+|||||+.+.|++.. +|+. .|..||| .| +++.|+||++| |...++.++ .+.++++++++|
T Consensus 513 ~dVlDvWFdSg~~p~a~~-~~p~~~~~~f~~~~P--ad---~~~~G~Di~r~----Wf~~l~~~~~~~~~~~pfk~v~~h 582 (975)
T PRK06039 513 PDVIDVWFDSGSMPYAQL-HYPFENKEWFEKHFP--AD---FIVEGIDQTRG----WFYTLLALSTALFDRPPYKNVLVH 582 (975)
T ss_pred cccccceeecCCccHHHh-CCcccChhhhhccCC--ce---EEEechhhHhh----HHHHHHHHHHHhcCCCcccEEEEe
Confidence 289999999999998865 6642 4788894 56 89999999986 444444322 112467999999
Q ss_pred ceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhC
Q 006368 345 EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (648)
Q Consensus 345 g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k 423 (648)
||++ .+|+|||||+||+|+|.++++ .||+|++||||++..+.++|++||++.+.+..|+.+ ++++|+++++.....-
T Consensus 583 G~Vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~ 660 (975)
T PRK06039 583 GHVLDEDGQKMSKSLGNYVDPFEVFD-KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFL-LTLWNVYSFFVLYANL 660 (975)
T ss_pred eeEECCCCCCcCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHH-HHHHHHHHHHHHHhhh
Confidence 9998 599999999999999999999 799999999999988778999999999777676655 9999999887643221
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHhh--hhhhhccCChh
Q 006368 424 PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNAYLQES--QFWKLYKEDQP 500 (648)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~-~N~yi~~~--~pw~l~k~~~~ 500 (648)
. .++..............|++++..++.+++.+.++|++|+++.|++.+++|++. +|.|++.. +||...+ +.
T Consensus 661 -~--~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~-~~- 735 (975)
T PRK06039 661 -D--GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEED-DP- 735 (975)
T ss_pred -c--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-cH-
Confidence 0 111110000012245689999999999999999999999999999999999965 68999876 4687643 22
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 501 SCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 501 ~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
....+..++..+++.++.+|+||||++|++||+.|+.
T Consensus 736 ~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 736 DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 2334667788899999999999999999999999984
No 21
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.6e-75 Score=681.53 Aligned_cols=492 Identities=19% Similarity=0.268 Sum_probs=392.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc------CCCHH----
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED------NCSPK---- 88 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~------g~~~~---- 88 (648)
.++++|+|++|||||||.+|||||++ ++.+|+++||+||+|++|.|++|+|+||+||+.+|+++ ++++.
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~-~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~ 124 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALN-KILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRK 124 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHH-HHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHH
Confidence 46678999999999999999999999 67799999999999999999999999999999999886 66666
Q ss_pred ---HHHHHHHHHHHHHHhhcCc--ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc--
Q 006368 89 ---EICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-- 161 (648)
Q Consensus 89 ---e~~~~~~~~~~~~~~~l~i--~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-- 161 (648)
++++++.+.++++|++||+ ++|.+++|++|.|.+.++++|.+|+++|+||++.+.++||+.|++.|+|.+|+.
T Consensus 125 ~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~ 204 (912)
T PRK05743 125 KCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD 204 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc
Confidence 4888889999999999999 556889999999999999999999999999999999999999999999998861
Q ss_pred -cC-----------------------------CC--Ccc-------------------cc--------------------
Q 006368 162 -TC-----------------------------PF--EGC-------------------NY-------------------- 170 (648)
Q Consensus 162 -~c-----------------------------p~--~~c-------------------~~-------------------- 170 (648)
.+ |+ +|| .+
T Consensus 205 ~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 284 (912)
T PRK05743 205 KTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYE 284 (912)
T ss_pred ccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceE
Confidence 11 11 000 00
Q ss_pred --------C---------------------------------------------------------CCCCccccccCCC-
Q 006368 171 --------E---------------------------------------------------------SARGDQCENCGKL- 184 (648)
Q Consensus 171 --------~---------------------------------------------------------~~~g~~c~~cg~~- 184 (648)
+ +..|...+.+|.+
T Consensus 285 ~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 364 (912)
T PRK05743 285 VLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFA 364 (912)
T ss_pred EEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccC
Confidence 0 0011010011110
Q ss_pred ---C------------------Ccc--ccCCCcCCCCCCCcEEeeccceeeechh--hHHHHHHHHHcCCCCCCCChHHH
Q 006368 185 ---L------------------NAT--DLKDPKCKVCRNAPQIRDTNHLFLDLPA--LRNKLEEYINNMSVAGSWSQNAI 239 (648)
Q Consensus 185 ---l------------------~~~--el~~~~~~~~g~~~~~~~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~~ 239 (648)
+ ... ....|+|||||++++++.++|||+++++ +++.+.+.+++.... |+..+
T Consensus 365 Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~---P~~~~ 441 (912)
T PRK05743 365 GLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWI---PAWGK 441 (912)
T ss_pred CcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEE---ChHHH
Confidence 0 000 0136999999999999999999999998 999999999876543 66778
Q ss_pred HHHHHHHhcccccceeeeccCCCcccCCcCCC--------------------CceeeeeecccchHHHh--ccccc----
Q 006368 240 QATHAWLKEGLKVRCITRDLKWGVPVPLERFK--------------------EKVFYVWFDAPIGYVSI--TSCYT---- 293 (648)
Q Consensus 240 ~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~--------------------~~v~yVWfDa~~~yis~--~~~~~---- 293 (648)
+++.+||+. ++|||||||+.||+|||.+.++ ++.+++|||+...++.. ...+.
T Consensus 442 ~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~D 520 (912)
T PRK05743 442 NRIESMVEN-RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETD 520 (912)
T ss_pred HHHHHHHhc-CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCc
Confidence 889999987 8999999999999999985321 23456777766555432 00110
Q ss_pred --h---------------HHHhhcCCCCCcceEEEEeccccc--hhHhHHHHHhhhcCCCcccCceEEeeceee-cCCcc
Q 006368 294 --N---------------EWEQWWKNPENVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGK 353 (648)
Q Consensus 294 --~---------------~~~~~w~~p~~~~~i~~~GkDi~~--fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~K 353 (648)
+ ....|| |.| +|+.|+||++ ||+.+|+++++ .|. +||+++++|||++ .+|+|
T Consensus 521 vlDvWfdSg~s~~~~~~~~~~~~~--P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~--~P~k~vl~HG~vld~~G~K 592 (912)
T PRK05743 521 ILDVWFDSGSSHAAVLEQRPELGY--PAD---LYLEGSDQHRGWFQSSLLTSVAT-RGK--APYKQVLTHGFTVDGKGRK 592 (912)
T ss_pred hhhhhhhhCCCHHHHhcCccccCC--Cce---EEEecccccchHHHHHHHHHHHh-cCC--CccceeEEeeeEECCCCCC
Confidence 0 012356 456 8999999996 88999999998 565 4889999999998 59999
Q ss_pred ccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCC---
Q 006368 354 FSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--- 430 (648)
Q Consensus 354 MSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~--- 430 (648)
||||+||+|+|.++++ .||+|+||||+++ +++++|++|+++.+.+. ++..++|+|.++.+++.+.. ++
T Consensus 593 MSKSlGNvIdP~~ii~-~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~nl~~-----~~~~~ 663 (912)
T PRK05743 593 MSKSLGNVIDPQDVIK-KYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRFLLGNLND-----FDPAK 663 (912)
T ss_pred CCCCCCCcCCHHHHHH-hcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCccc
Confidence 9999999999999998 7999999999997 77899999999998874 67889999998887765443 22
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhhhhh--hccCChhhHHHHH
Q 006368 431 SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWK--LYKEDQPSCSIVM 506 (648)
Q Consensus 431 ~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~pw~--l~k~~~~~~~~vl 506 (648)
+.+|. ......|++++..++.+++.+.++|++|+|+.|++.+++++ ..+|.|++..+||. ..+++. ....+.
T Consensus 664 ~~~~~---~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~-~r~~~~ 739 (912)
T PRK05743 664 DAVPY---EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSL-ARRSAQ 739 (912)
T ss_pred ccCCc---hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcH-HHHHHH
Confidence 11221 12356799999999999999999999999999999999999 57899999999963 332222 223344
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 507 RTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 507 ~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
.++..++..+..+|+||||++|++||++|+
T Consensus 740 ~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 740 TALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 556677788899999999999999999996
No 22
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.6e-73 Score=675.65 Aligned_cols=500 Identities=18% Similarity=0.234 Sum_probs=401.4
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHH-----HcCCCH------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM-----EDNCSP------ 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~-----~~g~~~------ 87 (648)
.++++|+|++|||||||.+|||||++ ++.+||++||+||+|++|+|++|+|+||.+++...+ +.|.++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~-~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e 135 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALT-GAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGRE 135 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHH-HHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHH
Confidence 35678999999999999999999999 567999999999999999999999999999966543 335443
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 88 ------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.++++++...+++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++.|+|.+|
T Consensus 136 ~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EV 215 (995)
T PTZ00419 136 EFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV 215 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhc
Confidence 46788999999999999999987 7889999999999999999999999999999999999999999999887
Q ss_pred c---------------------c---------------------cCCC--Cccc--------------------------
Q 006368 160 E---------------------G---------------------TCPF--EGCN-------------------------- 169 (648)
Q Consensus 160 ~---------------------g---------------------~cp~--~~c~-------------------------- 169 (648)
+ | |.|. +||.
T Consensus 216 e~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~ 295 (995)
T PTZ00419 216 EFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPD 295 (995)
T ss_pred ccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCC
Confidence 5 2 1121 0100
Q ss_pred ----------c-CCCCCc---------------------------------cccccCCCCC-------------------
Q 006368 170 ----------Y-ESARGD---------------------------------QCENCGKLLN------------------- 186 (648)
Q Consensus 170 ----------~-~~~~g~---------------------------------~c~~cg~~l~------------------- 186 (648)
+ +...|. ..+++|.+--
T Consensus 296 ~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~ 375 (995)
T PTZ00419 296 RKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGL 375 (995)
T ss_pred CEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCC
Confidence 0 000111 1111111100
Q ss_pred -----ccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 187 -----ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 187 -----~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
+.....|+|+|||++++.+.++|||++++.+++++.+++++.+.. ..|+...++..+||+. ++|||||||+.|
T Consensus 376 l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~-~~P~~~~~~~~~wl~~-l~DWcISRQr~W 453 (995)
T PTZ00419 376 LRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK-IIPSSHENVWYHWLEN-IQDWCISRQLWW 453 (995)
T ss_pred EEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE-EEChHHHHHHHHHHhc-cccceeeeeccc
Confidence 001235899999999999999999999999999999999765432 2477788889999986 999999999999
Q ss_pred CcccCCcCC-------------------------------------------CCceeeeeecccchHHHhccccch---H
Q 006368 262 GVPVPLERF-------------------------------------------KEKVFYVWFDAPIGYVSITSCYTN---E 295 (648)
Q Consensus 262 Gi~vP~~~~-------------------------------------------~~~v~yVWfDa~~~yis~~~~~~~---~ 295 (648)
|+|||.|.+ +.+|+|||||+.+.|++.+ +||. +
T Consensus 454 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~-g~p~~~~~ 532 (995)
T PTZ00419 454 GHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTL-GWPDQTDD 532 (995)
T ss_pred CceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHh-CCCCChHH
Confidence 999998511 2389999999999998765 7753 5
Q ss_pred HHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC---cccCceEEeeceee-cCCccccccCCcccChhhhhhc-
Q 006368 296 WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDT- 370 (648)
Q Consensus 296 ~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~---~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~- 370 (648)
|..||| .| +++.|+||++| |++.++.+|.. -.|++.+++||++. .+|+|||||+||||+|.++++.
T Consensus 533 ~~~~~P--~d---~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~ 603 (995)
T PTZ00419 533 LQRFFP--TS---LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGI 603 (995)
T ss_pred HhhcCC--Cc---EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhccc
Confidence 788884 56 89999999985 76665554431 12348999999997 5999999999999999999871
Q ss_pred -----------------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHH
Q 006368 371 -----------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFIN 415 (648)
Q Consensus 371 -----------------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 415 (648)
.||+|+|||||++..+.+.|++|+.+.+... .+++++++|+++
T Consensus 604 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~--~~f~nklwN~~r 681 (995)
T PTZ00419 604 SLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGY--RHFCNKLWNAVK 681 (995)
T ss_pred chhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHH--HHHHHHHHHHHH
Confidence 5999999999998888889999999998865 789999999999
Q ss_pred HHHHhhhCCCCCCCCCCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhh
Q 006368 416 RVLSFIAKPPGQGYGSIVPD----ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQES 489 (648)
Q Consensus 416 R~~~~~~k~~~~~~~~~~p~----~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~ 489 (648)
|++..+.. ...+..+. .........|++++..++.+++.+.++|++|+|+.|++.+++|+ ..+|.||+..
T Consensus 682 f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~ 757 (995)
T PTZ00419 682 FALMKLLK----DFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELI 757 (995)
T ss_pred HHHhcccc----cccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 99877654 11111000 00012345799999999999999999999999999999999964 6799999999
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 490 QFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 490 ~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+||.....+......+..++.++++.+..||+||||++|++||+.|+.
T Consensus 758 K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 758 KPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 999732233344556778888999999999999999999999999973
No 23
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.7e-74 Score=618.23 Aligned_cols=326 Identities=20% Similarity=0.296 Sum_probs=293.7
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---------CCCH-----
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------NCSP----- 87 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------g~~~----- 87 (648)
++|+||+|||||||.|||||+++ ++.+||++||+|++|++|+|++|+|+||+||+..|+++ +++|
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~-~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALN-NTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 36999999999999999999998 68899999999999999999999999999999999875 3443
Q ss_pred --HHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 88 --KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 88 --~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+++++++++.+++++++|||++| .|++|++|+|.+.|+++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 46899999999999999999987 8999999999999999999999999999999999999999999998643
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
|++||++++.+.++||||+|++|+++|++++++++.. .+|++.++++.
T Consensus 156 -------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~ 203 (382)
T cd00817 156 -------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIK-FVPERMEKRYE 203 (382)
T ss_pred -------------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcE-EEChHHHHHHH
Confidence 6778999999999999999999999999999986431 35888999999
Q ss_pred HHHhcccccceeeeccCCCcccCCcCC----------------------------------CCceeeeeecccchHHHhc
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------KEKVFYVWFDAPIGYVSIT 289 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~----------------------------------~~~v~yVWfDa~~~yis~~ 289 (648)
+||++ +.||||||++.||||+|.+.+ +++|+||||||+++|++.+
T Consensus 204 ~~l~~-l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~ 282 (382)
T cd00817 204 NWLEN-IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTL 282 (382)
T ss_pred HHHhh-CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHh
Confidence 99998 999999999999999997432 3799999999999999976
Q ss_pred cccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChh
Q 006368 290 SCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGN 365 (648)
Q Consensus 290 ~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~ 365 (648)
+|+ ..|+.||| +| +|++|+||++||.+++.++.+++... .+...+++||+++ .+|+|||||+||+|++.
T Consensus 283 -~~~~~~~~~~~~~p--~d---~~~~G~D~~~~h~~~~l~~~~~~~g~-~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~ 355 (382)
T cd00817 283 -GWPEETKDLKKFYP--TS---LLVTGHDIIFFWVARMIMRGLKLTGK-LPFKEVYLHGLVRDEDGRKMSKSLGNVIDPL 355 (382)
T ss_pred -CCCCcchhHhhcCC--CC---eeeeecCcCchHHHHHHHHHHHhhCC-CchHHeEeeeeEECCCCCCccccCCCCCCHH
Confidence 454 35889995 46 89999999999999998888776432 2348999999998 89999999999999999
Q ss_pred hhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 366 DAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 366 ~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
|+++ .||+|++|||+++..+.++|.+|
T Consensus 356 dll~-~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 356 DVID-GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHH-hcCcHHHHHHHHhCCCccCCCCC
Confidence 9999 79999999999998888999887
No 24
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-72 Score=661.53 Aligned_cols=491 Identities=19% Similarity=0.263 Sum_probs=393.4
Q ss_pred CCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----
Q 006368 9 PAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---- 83 (648)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---- 83 (648)
|++...|.+.. ++++|+||+|+||+||.+||||+++ ++.+|+++||+||+|++|+|.+|+|+||+||+..|++.
T Consensus 11 W~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~-~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~ 89 (938)
T TIGR00395 11 WEEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRT-FTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRD 89 (938)
T ss_pred HHhCCCcccCCCCCCceEEecCCCCCCCCcccchhhh-hhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhh
Confidence 34455555532 4678999999999999999999998 67799999999999999999999999999999988772
Q ss_pred -----------C---------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEce
Q 006368 84 -----------N---------CSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141 (648)
Q Consensus 84 -----------g---------~~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~ 141 (648)
+ .+|.++++++...+++++++||+++| .-+.|++|.|.+.|++.|.+|+++|+||++.
T Consensus 90 ~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~ 169 (938)
T TIGR00395 90 ELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGE 169 (938)
T ss_pred hhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCC
Confidence 1 35688889999999999999999988 3557889999999999999999999999999
Q ss_pred EeeeeccCcCcccccccccc---------------------------cCCC-----------Cccc--------------
Q 006368 142 MQQPYCDTCKRFLADRLVEG---------------------------TCPF-----------EGCN-------------- 169 (648)
Q Consensus 142 ~~~~y~~~~~~~l~d~~v~g---------------------------~cp~-----------~~c~-------------- 169 (648)
+.+.||+.|++.++|.++.. |.|. |...
T Consensus 170 ~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s 249 (938)
T TIGR00395 170 HPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITS 249 (938)
T ss_pred eeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEe
Confidence 99999999999999987641 1121 0000
Q ss_pred --------c-------------C------------------------------------------------C--------
Q 006368 170 --------Y-------------E------------------------------------------------S-------- 172 (648)
Q Consensus 170 --------~-------------~------------------------------------------------~-------- 172 (648)
+ . +
T Consensus 250 ~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~ 329 (938)
T TIGR00395 250 KEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYL 329 (938)
T ss_pred HHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhc
Confidence 0 0 0
Q ss_pred ------------------CCCcc-----ccc-------------------------cCCCCCc-----------------
Q 006368 173 ------------------ARGDQ-----CEN-------------------------CGKLLNA----------------- 187 (648)
Q Consensus 173 ------------------~~g~~-----c~~-------------------------cg~~l~~----------------- 187 (648)
.+|+. |+. -|.+...
T Consensus 330 gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~ 409 (938)
T TIGR00395 330 GIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVK 409 (938)
T ss_pred CCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHH
Confidence 00100 000 0111100
Q ss_pred ------------ccc-CCCcCCCCCCCcEEe-eccceeeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccc
Q 006368 188 ------------TDL-KDPKCKVCRNAPQIR-DTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251 (648)
Q Consensus 188 ------------~el-~~~~~~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (648)
.++ ..|+|+|||++++++ .++|||++++ .+++.+.++++++.. +|++.++.+.+||+. ++
T Consensus 410 ~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~---~P~~~~~~~~~~l~~-l~ 485 (938)
T TIGR00395 410 ADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRI---IPEEVKNAFEGKIDW-LK 485 (938)
T ss_pred HHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEE---eCHHHHHHHHHHHhh-hh
Confidence 012 347899999999987 9999999999 599999999987653 588888899999985 99
Q ss_pred cceeeeccCCCcccCCcC------CCCceeeeeecccchHHHhcc------------------------ccc--------
Q 006368 252 VRCITRDLKWGVPVPLER------FKEKVFYVWFDAPIGYVSITS------------------------CYT-------- 293 (648)
Q Consensus 252 d~~IsR~~~WGi~vP~~~------~~~~v~yVWfDa~~~yis~~~------------------------~~~-------- 293 (648)
||||||++.||+|+|.+. .+++++||||+++.+|++... +++
T Consensus 486 DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~ 565 (938)
T TIGR00395 486 DWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLR 565 (938)
T ss_pred hcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHH
Confidence 999999999999999632 236899999999999975421 011
Q ss_pred hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC-cccCceEEeeceeecCCccccccCCcccChhhhhhcCC
Q 006368 294 NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNI 372 (648)
Q Consensus 294 ~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~-~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~ 372 (648)
.+|..|| |.| +|++|+||++||+++| .+++.+..+ -+.|+++++||||+.+|+|||||+||+|+|.++++ .|
T Consensus 566 ~ef~~~y--P~D---~~~~GkDii~~H~~~~-i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~-~y 638 (938)
T TIGR00395 566 REFEYWY--PLD---WRISGKDLIPNHLTFY-IFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVE-KF 638 (938)
T ss_pred HHHhhcC--Cce---EEEEeeccccchHHHH-HHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHH-Hc
Confidence 3577788 456 8999999999999999 556655433 12569999999999999999999999999999999 79
Q ss_pred CchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 006368 373 PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKV 452 (648)
Q Consensus 373 ~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l 452 (648)
|+|++||||++.++.++|++|+++.+.++.|. .++++|++.|+..... +..+ ......|+++++.+
T Consensus 639 GaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~~--------~~~~----~~~~~~D~wlls~l 704 (938)
T TIGR00395 639 GADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKESN--------LETG----EETSFIDRWLESRM 704 (938)
T ss_pred ChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhcc--------cCCC----ccCChHHHHHHHHH
Confidence 99999999999888899999999999988654 7799999988765321 1110 11245689999999
Q ss_pred HHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 006368 453 GKYVEQYLEAMEKVKLKQGL-KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEV 531 (648)
Q Consensus 453 ~~~~~~v~~a~d~~~~~~al-~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i 531 (648)
+.+.+.+.++|++|+++.|+ ..+++++..+|.|+...+ .+.. .++.++++.+++||+||||++|++|
T Consensus 705 ~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~---------~~~~---~~l~~~l~~~~~LLaP~~P~~aEei 772 (938)
T TIGR00395 705 NAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGG---------VNHK---DVLARYLETWIKLLAPFAPHFAEEM 772 (938)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCc---------chHH---HHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999 678899999999986521 1122 3567899999999999999999999
Q ss_pred HHHhCC
Q 006368 532 NKQLNL 537 (648)
Q Consensus 532 ~~~L~~ 537 (648)
|++||.
T Consensus 773 w~~Lg~ 778 (938)
T TIGR00395 773 WEEVGN 778 (938)
T ss_pred HHHcCC
Confidence 999984
No 25
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-72 Score=656.66 Aligned_cols=493 Identities=18% Similarity=0.214 Sum_probs=389.6
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcC----CC--------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN----CS-------- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g----~~-------- 86 (648)
.++++|+|++|||||||.+|||||+| ++..||++||+||+||+|.|++|+|+||+||+.+++++. ..
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln-~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~ 129 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALN-KILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAE 129 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHH-HHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHH
Confidence 36678999999999999999999999 566999999999999999999999999999999887663 32
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc
Q 006368 87 ----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (648)
Q Consensus 87 ----~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (648)
+.++++++.+.++++|++||++.| +.+.|++|.|.+.++++|.+|+++|+||++..+++||+.|++.|+|.+|+
T Consensus 130 f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Eve 209 (961)
T PRK13804 130 FRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIE 209 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcc
Confidence 345778888899999999999864 77889999999999999999999999999999999999999999997765
Q ss_pred c-------------------------------cCCC--Ccc-----------------------------c---------
Q 006368 161 G-------------------------------TCPF--EGC-----------------------------N--------- 169 (648)
Q Consensus 161 g-------------------------------~cp~--~~c-----------------------------~--------- 169 (648)
. |.|+ +|| .
T Consensus 210 y~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~ 289 (961)
T PRK13804 210 YHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAE 289 (961)
T ss_pred cccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHH
Confidence 1 1111 010 0
Q ss_pred ----------cC-----------------CCCCc-----c--------------------cc-----------ccC----
Q 006368 170 ----------YE-----------------SARGD-----Q--------------------CE-----------NCG---- 182 (648)
Q Consensus 170 ----------~~-----------------~~~g~-----~--------------------c~-----------~cg---- 182 (648)
++ .-.+. . |+ .-|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~ 369 (961)
T PRK13804 290 SVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEI 369 (961)
T ss_pred HHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcc
Confidence 00 00000 0 00 000
Q ss_pred --------CCCC--cc-------------------------------------ccCCCcCCCCCCCcEEeeccceeeech
Q 006368 183 --------KLLN--AT-------------------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLP 215 (648)
Q Consensus 183 --------~~l~--~~-------------------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~ 215 (648)
++.+ +. ....|+|+|||+|++.+.++|||++++
T Consensus 370 ~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~ 449 (961)
T PRK13804 370 PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMD 449 (961)
T ss_pred cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcC
Confidence 0000 00 014689999999999999999999999
Q ss_pred h-------hHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC------------------
Q 006368 216 A-------LRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------ 270 (648)
Q Consensus 216 ~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------ 270 (648)
. +++.+.+.+++.... |+...+++.+||+. ++|||||||+.||+|+|.+.+
T Consensus 450 ~~~~~~~~~k~~al~~i~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~ 525 (961)
T PRK13804 450 KDLGDGTTLRSRALDAIDKTRFV---PAAGQNRLYNMIED-RPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADA 525 (961)
T ss_pred CcccchHHHHHHHHHHHhccEEE---CHHHHHHHHHHHhc-CccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHH
Confidence 8 999999999877643 66778889999986 799999999999999998310
Q ss_pred ------------------------------CCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccc--
Q 006368 271 ------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP-- 318 (648)
Q Consensus 271 ------------------------------~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~-- 318 (648)
+..|++||||+.+...... ....++ +| |+| +|+.|+||++
T Consensus 526 ~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~-~~~~~~--~~--PaD---~~~eG~Di~rgW 597 (961)
T PRK13804 526 FEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-EDRPDL--KW--PAD---LYLEGSDQHRGW 597 (961)
T ss_pred HHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccc-cCCccc--CC--Cce---EEEEEcccccHH
Confidence 1358889999865443221 122222 46 556 8999999996
Q ss_pred hhHhHHHHHhhhcCC-CcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHH
Q 006368 319 FHTVMFPSTLLGTGE-NWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 396 (648)
Q Consensus 319 fH~i~~pa~l~a~g~-~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~ 396 (648)
||+. +|++.+. ..+||+++++|||++ .+|+|||||+||+|+|.++++ .||+|+||||+++ .++++|++||++
T Consensus 598 F~s~----ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaD~lRl~lls-~~~~~D~~fs~~ 671 (961)
T PRK13804 598 FNSS----LLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK-QSGADILRLWVAS-VDYSDDQRIGKE 671 (961)
T ss_pred HHHH----HHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-hcCHHHHHHHHHh-CCCCCCcccCHH
Confidence 8884 4444432 124679999999998 499999999999999999998 7999999999997 678899999999
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 006368 397 DLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (648)
Q Consensus 397 ~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~ 476 (648)
.+... +++.++|+|+++++++++.+ ++..............|++++..++.+++.+.++|++|+|++|++.++
T Consensus 672 ~l~~~--~~~~~kL~N~~rf~l~nl~~-----~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~ 744 (961)
T PRK13804 672 ILKQV--SETYRKLRNTLRWLLGNLAH-----FDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALV 744 (961)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhcccc-----CCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 98775 78899999999988887765 322110000123456789999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 477 SIS--SEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 477 ~l~--~~~N~yi~~~~pw~l~k~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+++ ..+|.|++..+||..... +......+..++..+++.++.+|+||||++|++||++|+.
T Consensus 745 ~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 745 NFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 998 458999999999854321 2233445667777889999999999999999999999983
No 26
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.4e-71 Score=648.99 Aligned_cols=490 Identities=17% Similarity=0.264 Sum_probs=389.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-------CCCHHHH---
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCSPKEI--- 90 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-------g~~~~e~--- 90 (648)
+++|+|++|||||||.+|||||+|. +.+|+++||+||+|++|.|++|+|+||.||+.+++++ +++|.+|
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~-~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~ 109 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNK-ILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAK 109 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHH-HHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHH
Confidence 4569999999999999999999995 5699999999999999999999999999999998543 3455444
Q ss_pred ----HHHHHHHHHHHHhhcCc--ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccccc--
Q 006368 91 ----CDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT-- 162 (648)
Q Consensus 91 ----~~~~~~~~~~~~~~l~i--~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~-- 162 (648)
++++...+++.|++||+ ++|..++|++|.|...++++|.+|+++|+||++..+++||++|++.|+|.+|+..
T Consensus 110 c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~ 189 (974)
T PLN02843 110 AAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEG 189 (974)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCC
Confidence 66777788999999999 5568889999999999999999999999999999999999999999999877520
Q ss_pred -------------------------------------CCC-----------Cc-------cc------------------
Q 006368 163 -------------------------------------CPF-----------EG-------CN------------------ 169 (648)
Q Consensus 163 -------------------------------------cp~-----------~~-------c~------------------ 169 (648)
.|+ |. ++
T Consensus 190 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~ 269 (974)
T PLN02843 190 HVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPG 269 (974)
T ss_pred ccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccc
Confidence 010 00 00
Q ss_pred -------------c-----------------------C------------------------------------------
Q 006368 170 -------------Y-----------------------E------------------------------------------ 171 (648)
Q Consensus 170 -------------~-----------------------~------------------------------------------ 171 (648)
+ .
T Consensus 270 ~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~ 349 (974)
T PLN02843 270 NVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQ 349 (974)
T ss_pred cccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCH
Confidence 0 0
Q ss_pred -----------------CCCCccccccCC-----CC-Ccc-------------------ccCCCcCCCCCCCcEEeeccc
Q 006368 172 -----------------SARGDQCENCGK-----LL-NAT-------------------DLKDPKCKVCRNAPQIRDTNH 209 (648)
Q Consensus 172 -----------------~~~g~~c~~cg~-----~l-~~~-------------------el~~~~~~~~g~~~~~~~~~~ 209 (648)
+..|...+.+|. .+ +.. ....|+||||++|++.+.++|
T Consensus 350 ~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~Q 429 (974)
T PLN02843 350 EDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQ 429 (974)
T ss_pred HHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCc
Confidence 111111111111 01 110 113699999999999999999
Q ss_pred eeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCC-------------------
Q 006368 210 LFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------- 270 (648)
Q Consensus 210 ~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------- 270 (648)
||+++..+++.+.+.++++... |+...+++.+||+. ++|||||||+.||+|+|.+..
T Consensus 430 WFi~~~~~k~~al~~~~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~ 505 (974)
T PLN02843 430 WFASVEGFRQAALDAIDKVKWI---PAQGENRIRAMVSG-RSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSI 505 (974)
T ss_pred eeEeCHHHHHHHHHHHhccEEE---ChHHHHHHHHHHhc-CcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHH
Confidence 9999999999999999887654 55667888999987 899999999999999994310
Q ss_pred -------------------------------CCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccc-
Q 006368 271 -------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP- 318 (648)
Q Consensus 271 -------------------------------~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~- 318 (648)
+..|++||||+.+.+.+.. +.. ...+| |.| +|+.|+||++
T Consensus 506 ~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~-~~~--~~~~~--PaD---l~~eG~Di~rg 577 (974)
T PLN02843 506 VAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL-GSR--EGLSY--PAD---LYLEGSDQHRG 577 (974)
T ss_pred HHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHh-ccc--cccCC--Cce---eeeeeccccch
Confidence 1268889999988765543 211 22357 456 8999999998
Q ss_pred -hhHhHHHHHhhhcCCCcccCceEEeeceeec-CCccccccCCcccChhhhhhc--------CCCchhHHHHHhhcCCCC
Q 006368 319 -FHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDT--------NIPVEVWRYYLLTNRPEV 388 (648)
Q Consensus 319 -fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~--------~~~~d~lR~~ll~~~~~~ 388 (648)
||+.+|+++. ..|. +|++++++|||+.. +|+|||||+||||+|.++++. .||+|+||||+++ ..++
T Consensus 578 Wf~s~l~~~~~-~~g~--~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~ 653 (974)
T PLN02843 578 WFQSSLLTSVA-TKGK--APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYT 653 (974)
T ss_pred HHHHHHHHHHH-hcCC--CccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccC
Confidence 8999999874 3454 37799999999974 899999999999999999972 4999999999997 6678
Q ss_pred CCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 006368 389 SDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (648)
Q Consensus 389 ~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~--~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~ 466 (648)
+|++|+++.+.+. ++..++|.|.++++++.+.. ++ ..++. .....+|+++++.++.+.+.+.++|++|
T Consensus 654 ~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~-----~~~~~~~~~---~~~~~~D~wiLskL~~li~~v~~aye~y 723 (974)
T PLN02843 654 GDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHD-----WKPDNAVPY---EDLPSIDKYALFQLENVVNEIEESYDNY 723 (974)
T ss_pred CCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998876 57788899999988766543 22 11111 1234679999999999999999999999
Q ss_pred cHHHHHHHHHHH--HHHHHHHHHhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 467 KLKQGLKTAMSI--SSEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 467 ~~~~al~~i~~l--~~~~N~yi~~~~pw~l~k~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
+|++|++.++++ ...+|.||+..+||...+. +......+..++..++..+.++|+||||++|++||++|+.
T Consensus 724 ~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 724 QFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccc
Confidence 999999999988 5689999999999987542 2222233444556677888999999999999999999985
No 27
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-71 Score=615.27 Aligned_cols=507 Identities=20% Similarity=0.266 Sum_probs=410.3
Q ss_pred CCCCCCCCCCCCC--CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---
Q 006368 9 PAAPPPKLPIPGK--RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED--- 83 (648)
Q Consensus 9 ~~~~~~~~~~~~~--~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~--- 83 (648)
|.++..|.|..+. ++|.|.+|||||+|.+|||||++.+ ..|+++||.||+||+|+|+.|+|++|.+++...+++
T Consensus 18 W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~t-l~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~ 96 (877)
T COG0525 18 WEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYT-LQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAA 96 (877)
T ss_pred HHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHH-HHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHH
Confidence 4456678886443 6699999999999999999999955 599999999999999999999999999998887664
Q ss_pred -CCC------------HHHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeecc
Q 006368 84 -NCS------------PKEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (648)
Q Consensus 84 -g~~------------~~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~ 148 (648)
|++ +.|+.+++...+++++++||+++|. ...|+||.+.++|++.|.+|+++|+||++++.+.|||
T Consensus 97 ~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP 176 (877)
T COG0525 97 EGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCP 176 (877)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCC
Confidence 543 3467778889999999999999873 4559999999999999999999999999999999999
Q ss_pred CcCcccccccccc-------------------------cCCC--Cc-------------------------ccc------
Q 006368 149 TCKRFLADRLVEG-------------------------TCPF--EG-------------------------CNY------ 170 (648)
Q Consensus 149 ~~~~~l~d~~v~g-------------------------~cp~--~~-------------------------c~~------ 170 (648)
.|+|.++|.+|+. |-|. .| ++-
T Consensus 177 ~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIia 256 (877)
T COG0525 177 KCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIA 256 (877)
T ss_pred ccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeec
Confidence 9999999988862 2232 01 110
Q ss_pred ----C---------------------------------CCCCccccccC-CC--CC----------------------cc
Q 006368 171 ----E---------------------------------SARGDQCENCG-KL--LN----------------------AT 188 (648)
Q Consensus 171 ----~---------------------------------~~~g~~c~~cg-~~--l~----------------------~~ 188 (648)
+ +..|..-++|+ .. ++ +.
T Consensus 257 D~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~ 336 (877)
T COG0525 257 DEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPH 336 (877)
T ss_pred CcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeec
Confidence 0 22333333443 21 00 01
Q ss_pred ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCc
Q 006368 189 DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268 (648)
Q Consensus 189 el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~ 268 (648)
.+.-|+|.|||++++...++|||+++..+++.+.+..+++.. ...|++..+...+|+++ ++|||||||+.||.++|.|
T Consensus 337 ~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i-~f~P~~~~~~~~~W~~~-i~DWcISRQlwwGh~IPvW 414 (877)
T COG0525 337 KHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKI-KFVPERMEKRYEDWMEN-IRDWCISRQLWWGHRIPVW 414 (877)
T ss_pred cccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCc-eEecHHHHHHHHHHHhh-CcCceeeeeeecCcccceE
Confidence 123589999999999999999999999999999999984432 12488888899999997 7799999999999999987
Q ss_pred CC-----------------------------CCceeeeeecccchHHHhccccch---HHHhhcCCCCCcceEEEEeccc
Q 006368 269 RF-----------------------------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 269 ~~-----------------------------~~~v~yVWfDa~~~yis~~~~~~~---~~~~~w~~p~~~~~i~~~GkDi 316 (648)
.+ +..|+++||++.+..+|.+ +|++ ++++|.| .+ +-+.|.||
T Consensus 415 y~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstl-gWp~~t~~l~~fyP--t~---llvtG~DI 488 (877)
T COG0525 415 YCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPDLKKFYP--TD---LLVTGHDI 488 (877)
T ss_pred EecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhccccccccc-CCCCcchHHHhcCC--Cc---cccccchh
Confidence 53 2368899999988888765 8875 6788774 45 67899999
Q ss_pred cchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 317 VPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 317 ~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
+||+..+.-.+-+...-. .|++.+++||.+. -+|+|||||+||||+|.++++ .||+|+|||+|++.+..++|++|++
T Consensus 489 IffWvarmi~~~~~~~~~-~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-~yGaDAlRf~la~~~~~G~Di~~~~ 566 (877)
T COG0525 489 IFFWVARMIMRGLHLTGE-VPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-KYGADALRFTLASLASPGRDINFDE 566 (877)
T ss_pred hHHHHHHHHHHHHHhcCC-CCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH-HhChHHHHHHHHhccCCCcccCcCH
Confidence 999877654333333222 4679999999996 889999999999999999999 7999999999998878899999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 006368 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (648)
Q Consensus 396 ~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i 475 (648)
+.+... .+++|+++|.-+.++..+.+ ... .+... ......|+|++..++++.+.+.++|++|+|..|.+.+
T Consensus 567 ~~~~~~--rnF~nKlWNa~Rfv~~~~~~-----~~~-~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~l 637 (877)
T COG0525 567 KRVEGY--RNFLNKLWNATRFVLMNLDD-----LGP-DDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAARAL 637 (877)
T ss_pred HHHHHH--HHHHHHHHhHHHHHHhcccc-----cCc-ccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999986 78999999998888765543 111 01000 1225789999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 476 MSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.+|+ ..|+.||+-.+|-... + +....+..+++..++..+..||+||||+++++||+.+..
T Consensus 638 y~F~W~~fcD~YlEl~K~~l~~-~-~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~ 699 (877)
T COG0525 638 YEFIWNDFCDWYLELAKPRLYG-G-EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPG 699 (877)
T ss_pred HHHhHHHHHHHHHHHhhhhhcC-c-HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCC
Confidence 9998 4599999999875433 2 444446788888999999999999999999999999976
No 28
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.7e-70 Score=645.91 Aligned_cols=507 Identities=16% Similarity=0.207 Sum_probs=395.5
Q ss_pred CCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-----C
Q 006368 12 PPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-----N 84 (648)
Q Consensus 12 ~~~~~~~--~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-----g 84 (648)
...|.+. .++++|+|++|||||||.||||||++ ++..|+++||+||+||+|+|++|+|+||.+++.+++++ |
T Consensus 116 ~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~-~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~ 194 (1066)
T PLN02381 116 SGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALT-AAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERH 194 (1066)
T ss_pred CCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHH-HHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcC
Confidence 3444442 35677999999999999999999999 56799999999999999999999999999999998753 5
Q ss_pred CC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCc
Q 006368 85 CS------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (648)
Q Consensus 85 ~~------------~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 150 (648)
.+ +.++++++...+++++++||+++| .-+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.|
T Consensus 195 ~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~ 274 (1066)
T PLN02381 195 LTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTL 274 (1066)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCC
Confidence 54 347788899999999999999887 4566999999999999999999999999999999999999
Q ss_pred Cccccccccc---------------------c--------------------cCCC--Cccc------------------
Q 006368 151 KRFLADRLVE---------------------G--------------------TCPF--EGCN------------------ 169 (648)
Q Consensus 151 ~~~l~d~~v~---------------------g--------------------~cp~--~~c~------------------ 169 (648)
++.|++.+|+ | |.|. .||.
T Consensus 275 ~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~ 354 (1066)
T PLN02381 275 RTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKF 354 (1066)
T ss_pred CCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCE
Confidence 9999998664 1 0000 0000
Q ss_pred ---------------c---C---------------------------------CCCCccccccCCCC-------------
Q 006368 170 ---------------Y---E---------------------------------SARGDQCENCGKLL------------- 185 (648)
Q Consensus 170 ---------------~---~---------------------------------~~~g~~c~~cg~~l------------- 185 (648)
+ + +..|...+.||..+
T Consensus 355 ~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii 434 (1066)
T PLN02381 355 AVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVI 434 (1066)
T ss_pred EECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHH
Confidence 0 0 11222222222100
Q ss_pred ------------CccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHH--cCCCCCCCChHHHHHHHHHHhcccc
Q 006368 186 ------------NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN--NMSVAGSWSQNAIQATHAWLKEGLK 251 (648)
Q Consensus 186 ------------~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (648)
.+.+...|+|+|||++++.+.++|||++++.+++.+.+.+. .+......|.+..++..+||.+ ++
T Consensus 435 ~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n-~~ 513 (1066)
T PLN02381 435 EALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLEN-IR 513 (1066)
T ss_pred HHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhc-Cc
Confidence 01123469999999999999999999999999999988882 1111112377778888999987 88
Q ss_pred cceeeeccCCCcccCCcCC-------------------------------------------CCceeeeeecccchHHHh
Q 006368 252 VRCITRDLKWGVPVPLERF-------------------------------------------KEKVFYVWFDAPIGYVSI 288 (648)
Q Consensus 252 d~~IsR~~~WGi~vP~~~~-------------------------------------------~~~v~yVWfDa~~~yis~ 288 (648)
|||||||+.||+|+|.|.. +..|++||||+.+.+++.
T Consensus 514 DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~ 593 (1066)
T PLN02381 514 DWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSV 593 (1066)
T ss_pred cceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHH
Confidence 9999999999999998632 235899999999988776
Q ss_pred ccccch---HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccCh
Q 006368 289 TSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFG 364 (648)
Q Consensus 289 ~~~~~~---~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~ 364 (648)
+ +||. +|..|+ |.| +.+.|.||++|+-..+..+-+.+... .|++++++||++. .+|+|||||+||||+|
T Consensus 594 l-g~P~~~~~~~~~~--P~d---~~~~G~Dii~~W~~rmi~~~~~~~~~-~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP 666 (1066)
T PLN02381 594 L-GWPDDTDDLKAFY--PTS---VLETGHDILFFWVARMVMMGMQLGGD-VPFRKVYLHPMIRDAHGRKMSKSLGNVIDP 666 (1066)
T ss_pred h-cCCCCHHHHhccC--CCe---eeeecchhhhhHHHHHHHHHHHhCCC-CchHHheecceEECCCCCCCCCCCCCCCCH
Confidence 4 6753 566777 556 67899999988544333222222222 4679999999997 7999999999999999
Q ss_pred hhhhhc------------------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHH
Q 006368 365 NDAKDT------------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 365 ~~~l~~------------------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
.++++. .||+|+||||+++..+.+.|++|+...+... ..+++
T Consensus 667 ~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~--r~f~n 744 (1066)
T PLN02381 667 LEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGY--RQWCN 744 (1066)
T ss_pred HHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHH--HHHHH
Confidence 999872 4899999999998887888999999998754 78999
Q ss_pred HHhHHHHHHHHhhhCCCCCCCCC--CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHH
Q 006368 409 NLGNFINRVLSFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNA 484 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k~~~~~~~~--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~ 484 (648)
+|+|+++.++..+.. .+.. .++. .....+|+++++.++.++..+.++|++|+|+.|++.+++|+ ..+|.
T Consensus 745 KlwNa~rf~~~~~~~----~~~~~~~~~~---~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~ 817 (1066)
T PLN02381 745 KLWNAVRFAMSKLGD----DYTPPATLSV---ETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDV 817 (1066)
T ss_pred HHHHHHHHHHhhccc----ccCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHH
Confidence 999999887654321 1211 0110 12346799999999999999999999999999999999984 67999
Q ss_pred HHHhhhhhhhccCC--hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 485 YLQESQFWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 485 yi~~~~pw~l~k~~--~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
||+..+||...+.. ......+..++..++..+..||+||||+++++||+.|+
T Consensus 818 Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 818 FIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 99999999764321 12223455677778888999999999999999999996
No 29
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.8e-69 Score=636.08 Aligned_cols=503 Identities=17% Similarity=0.206 Sum_probs=384.7
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC-------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC------------- 85 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~------------- 85 (648)
++++|++++|||||||.||||||++ ++.+|+++||+||+||+|.|++|+|+||+||+..++++ |+
T Consensus 100 ~~~~Fv~~~gPPyanG~lHiGHal~-~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~ 178 (1205)
T PTZ00427 100 NKKAYIFYDGPPFATGLPHYGHLLA-GIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDV 178 (1205)
T ss_pred CCCcEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHH
Confidence 4567888999999999999999999 56799999999999999999999999999999999863 32
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc
Q 006368 86 ---SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (648)
Q Consensus 86 ---~~~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (648)
.|.++++++...+++++++|| +++|.+++|+++.|.+.|+++|.+|+++|+||++...++||+.|++.|++.+|.
T Consensus 179 f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~ 258 (1205)
T PTZ00427 179 YNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELN 258 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhh
Confidence 257888899999999999999 667789999999999999999999999999999999999999999999998761
Q ss_pred ------------------------------------------------------------------c--------cCCC-
Q 006368 161 ------------------------------------------------------------------G--------TCPF- 165 (648)
Q Consensus 161 ------------------------------------------------------------------g--------~cp~- 165 (648)
+ |.|+
T Consensus 259 ~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwT 338 (1205)
T PTZ00427 259 LNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWT 338 (1205)
T ss_pred cccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchh
Confidence 0 1121
Q ss_pred -Ccccc----------------------------------------------------------CCCC----------Cc
Q 006368 166 -EGCNY----------------------------------------------------------ESAR----------GD 176 (648)
Q Consensus 166 -~~c~~----------------------------------------------------------~~~~----------g~ 176 (648)
++|.+ ..-. +.
T Consensus 339 Lpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~ 418 (1205)
T PTZ00427 339 LPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKER 418 (1205)
T ss_pred hhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCc
Confidence 01000 0000 00
Q ss_pred --------------------ccc-----------ccCC-------CCCcc------------------------------
Q 006368 177 --------------------QCE-----------NCGK-------LLNAT------------------------------ 188 (648)
Q Consensus 177 --------------------~c~-----------~cg~-------~l~~~------------------------------ 188 (648)
.|+ .-|- .+.+.
T Consensus 419 ~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk 498 (1205)
T PTZ00427 419 AYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLK 498 (1205)
T ss_pred eeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHH
Confidence 000 0010 00000
Q ss_pred -----------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHH-HHHHHHHHhcccccceee
Q 006368 189 -----------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA-IQATHAWLKEGLKVRCIT 256 (648)
Q Consensus 189 -----------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~gl~d~~Is 256 (648)
....|+|||||+|++.+..+|||++++++++.+.+..+...+. |... .++..+||.+ ++|||||
T Consensus 499 ~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~n-~~DWcIS 574 (1205)
T PTZ00427 499 NENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWI---PAHIKEKKFHNWIKD-AKDWCIS 574 (1205)
T ss_pred hCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEe---CchhhHhHHHHHHhc-Cccceee
Confidence 0136899999999999999999999999998888766555432 5555 4688999987 8999999
Q ss_pred eccCCCcccCCcCCC--------------------------------------------------CceeeeeecccchHH
Q 006368 257 RDLKWGVPVPLERFK--------------------------------------------------EKVFYVWFDAPIGYV 286 (648)
Q Consensus 257 R~~~WGi~vP~~~~~--------------------------------------------------~~v~yVWfDa~~~yi 286 (648)
||+.||+|+|.|.++ ..|++||||+.+...
T Consensus 575 RqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~ 654 (1205)
T PTZ00427 575 RNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPY 654 (1205)
T ss_pred eccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChH
Confidence 999999999965311 028999999877665
Q ss_pred Hhccccc-----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCc
Q 006368 287 SITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGI 360 (648)
Q Consensus 287 s~~~~~~-----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN 360 (648)
+. .+|| ++|+.++ |+| +...|.||+++|-...-.+-.++- +.+|++++++|||++ .+|+|||||+||
T Consensus 655 a~-~~~P~~~~~~~f~~~f--PaD---~i~eG~Dq~rgWf~s~l~~s~~l~-~~~PfK~VlvHG~Vld~dG~KMSKSlGN 727 (1205)
T PTZ00427 655 AK-VHYPFSTEKEDFHKIF--PAD---FIAEGLDQTRGWFYTLLVISTLLF-DKAPFKNLICNGLVLASDGKKMSKRLKN 727 (1205)
T ss_pred HH-hCCCcccchhhHhccC--Cce---EEEEecchhccHHHHHHHHHHHhc-CCCCcceeEEccEEEcCCCCCcccCCCC
Confidence 43 3664 3577777 567 789999999876433222111211 224669999999998 599999999999
Q ss_pred ccChhhhhhcCCCchhHHHHHhhcCC-CCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCC---CCCCCCCCCC
Q 006368 361 GVFGNDAKDTNIPVEVWRYYLLTNRP-EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG---QGYGSIVPDA 436 (648)
Q Consensus 361 ~I~~~~~l~~~~~~d~lR~~ll~~~~-~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~---~~~~~~~p~~ 436 (648)
+|+|.++++ +||+|+|||||++..+ .++|++|+++.+.+..+ .+.+++.|.++.+...+..... ..|+. .|..
T Consensus 728 vIDP~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r-~~l~klwN~~rF~~~~i~~~~~~~~~~f~~-~~~~ 804 (1205)
T PTZ00427 728 YPDPLYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVK-SFILPFYHSFRFFSQEVTRYECLNKKQFLF-NTDY 804 (1205)
T ss_pred CCCHHHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHH-HHHHHHHHHHHHHHhccccccccccccCCc-Cccc
Confidence 999999998 8999999999998655 47999999999877664 4567777777766654432000 00100 0100
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHH
Q 006368 437 NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHL 515 (648)
Q Consensus 437 ~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~ 515 (648)
.......+|+|+++.++.+++.+.++|++|+++.|++.|++++. .+|+|++..++-.....+......++.++.++++.
T Consensus 805 ~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~ 884 (1205)
T PTZ00427 805 IYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHL 884 (1205)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHH
Confidence 00123567999999999999999999999999999999999996 79999997764111111123456788999999999
Q ss_pred HHHHhhccchHHHHHHHHHhCC
Q 006368 516 LACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 516 l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
++.||+||||++|++||+.|+.
T Consensus 885 ~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 885 FTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHccccchHHHHHHHHHhhh
Confidence 9999999999999999999963
No 30
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-69 Score=606.75 Aligned_cols=497 Identities=22% Similarity=0.319 Sum_probs=395.6
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC-----------
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~----------- 85 (648)
..|++.|++..+|||+||.+|||||.|.+| .||+.||..|+||+|.++.|+|+||+||+.+++++ |.
T Consensus 45 ~~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~ 123 (933)
T COG0060 45 NKGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVE 123 (933)
T ss_pred hCCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHH
Confidence 357788999999999999999999999865 99999999999999999999999999999888775 42
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCccc--ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 86 ----SPKEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 86 ----~~~e~~~~~~~~~~~~~~~l~i~~--D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.|++++.++.+.+++.+++||+.. |+-+.|.++.|++.+.++|.+++++|+||++..+++||++|++.|++.+|
T Consensus 124 efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEv 203 (933)
T COG0060 124 EFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEV 203 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhh
Confidence 256777788899999999999865 46788999999999999999999999999999999999999999999887
Q ss_pred cc-----------------------------cCCC-----------C--------------------------ccc---c
Q 006368 160 EG-----------------------------TCPF-----------E--------------------------GCN---Y 170 (648)
Q Consensus 160 ~g-----------------------------~cp~-----------~--------------------------~c~---~ 170 (648)
+. |+|+ | ..+ +
T Consensus 204 ey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~ 283 (933)
T COG0060 204 EYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDY 283 (933)
T ss_pred cccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcce
Confidence 62 4554 0 000 0
Q ss_pred C------------------------------------------------CCCC----ccccccC------------C---
Q 006368 171 E------------------------------------------------SARG----DQCENCG------------K--- 183 (648)
Q Consensus 171 ~------------------------------------------------~~~g----~~c~~cg------------~--- 183 (648)
+ ++.| ..|..-| .
T Consensus 284 ~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~ 363 (933)
T COG0060 284 EVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTE 363 (933)
T ss_pred EEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccc
Confidence 0 0000 0111111 1
Q ss_pred --------CC-Ccc-------------------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCC
Q 006368 184 --------LL-NAT-------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (648)
Q Consensus 184 --------~l-~~~-------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (648)
.+ +.. ...+|+||||++|+++|.++|||.+++.+++++++-+++..+. |
T Consensus 364 ~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~---P 440 (933)
T COG0060 364 EAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWV---P 440 (933)
T ss_pred cchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEE---C
Confidence 11 000 1247999999999999999999999999999999888776654 4
Q ss_pred hHHHHHHHHHHhcccccceeeeccCCCcccCCcCC---------------------------------------------
Q 006368 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF--------------------------------------------- 270 (648)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~--------------------------------------------- 270 (648)
....+++.+||++ .+|||||||+.||+|+|.+..
T Consensus 441 ~~~~~R~~~mve~-r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g 519 (933)
T COG0060 441 DWGKNRFGNMVEN-RPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDG 519 (933)
T ss_pred hhHHHHHHHHHcC-CCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCc
Confidence 4456788999986 899999999999999998520
Q ss_pred -----CCceeeeeecccchHHHhccccchHHHhhcCCC-CCcceEEEEecccc--chhHhHHHHHhhhcCCCcccCceEE
Q 006368 271 -----KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNP-ENVELYQFMGKDNV--PFHTVMFPSTLLGTGENWTLMKTIS 342 (648)
Q Consensus 271 -----~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p-~~~~~i~~~GkDi~--~fH~i~~pa~l~a~g~~~~~p~~~~ 342 (648)
...|++||||+...+.+....... ..|+.. +| +...|.|+. +||+..-.+..+- | .+|.++++
T Consensus 520 ~~~~rv~DvlDVWFDSGs~~~a~~~~~~~---~~~~~~~aD---~~lEGsDQ~RGWF~Ssl~~s~a~~-~--~aPYk~vl 590 (933)
T COG0060 520 KEYRRVPDVLDVWFDSGSTPYAVLHPREN---LKFPALFAD---FYLEGSDQTRGWFYSSLLTSTALF-G--RAPYKNVL 590 (933)
T ss_pred ceeEecCcceEEEEcCCCCcccccCCccc---ccCccccCc---EEEEeccccchhHHHHHHHHHHHc-C--CchHHHHh
Confidence 126899999998877665421111 223210 25 799999998 5887655444333 2 35779999
Q ss_pred eeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhh
Q 006368 343 VTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421 (648)
Q Consensus 343 ~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~ 421 (648)
+|||+. -+|+|||||+||+|+|.++++ .||+|+||+|+++. ++..|+.||++.+... ++..+.+.|.+++.+..+
T Consensus 591 tHGfvlDe~GrKMSKSlGN~v~P~~V~~-~yGADiLRLwv~ss-d~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl 666 (933)
T COG0060 591 THGFVLDEKGRKMSKSLGNVVDPQDVID-KYGADILRLWVASS-DYWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNL 666 (933)
T ss_pred hcccEECCCCCCccccCCCcCCHHHHHH-hhCchheeeeeeec-CchhccccCHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 999986 789999999999999999999 89999999999984 5779999999997665 789999999999998886
Q ss_pred hCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhhh--hhhccC
Q 006368 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQF--WKLYKE 497 (648)
Q Consensus 422 ~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~p--w~l~k~ 497 (648)
.. |+.........+...+|++++..++.+++.+.++|++|+|+++++.+++++ ..+|.||+..+. |..+ .
T Consensus 667 ~~-----fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~-~ 740 (933)
T COG0060 667 DD-----FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA-A 740 (933)
T ss_pred cC-----CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC-C
Confidence 64 543321111124567899999999999999999999999999999999998 459999998886 4432 3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 498 ~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
+.....++..++.+++..+..+|+||+|+++++||+.|...
T Consensus 741 ~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 741 DSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC
Confidence 33444556777788999999999999999999999999755
No 31
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-67 Score=611.23 Aligned_cols=443 Identities=20% Similarity=0.310 Sum_probs=358.0
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
+++||++++|||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+||+.+|+++|++|.++++++.+.++++
T Consensus 32 ~~~~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 110 (805)
T PRK00390 32 KKYYVLDMFPYPSGGLHMGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQ 110 (805)
T ss_pred CCEEEEccCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 77899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccc
Q 006368 102 YKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (648)
Q Consensus 102 ~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~ 179 (648)
+++||+++| .+++|++|.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|+
T Consensus 111 ~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~------------------- 171 (805)
T PRK00390 111 LKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI------------------- 171 (805)
T ss_pred HHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-------------------
Confidence 999999887 68999999999999999999999999999999999999999999988764
Q ss_pred ccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC------------------C----CC-----
Q 006368 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS------------------V----AG----- 232 (648)
Q Consensus 180 ~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~------------------~----~~----- 232 (648)
++.|++||.+++.++++||||++++|.++|.++++... . ++
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~ 239 (805)
T PRK00390 172 ------------DGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSD 239 (805)
T ss_pred ------------CCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCC
Confidence 23467789999999999999999999998888754420 0 00
Q ss_pred ----CC----------------C---------------------------------------------------------
Q 006368 233 ----SW----------------S--------------------------------------------------------- 235 (648)
Q Consensus 233 ----~~----------------~--------------------------------------------------------- 235 (648)
.| |
T Consensus 240 ~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi 319 (805)
T PRK00390 240 EKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPV 319 (805)
T ss_pred CEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeE
Confidence 00 0
Q ss_pred -----------------------------------------------------------------------hHHHHHHHH
Q 006368 236 -----------------------------------------------------------------------QNAIQATHA 244 (648)
Q Consensus 236 -----------------------------------------------------------------------~~~~~~~~~ 244 (648)
..+.+.+.+
T Consensus 320 ~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~ 399 (805)
T PRK00390 320 WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIA 399 (805)
T ss_pred EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHH
Confidence 000111112
Q ss_pred HHhc----------ccccceeeeccCCCcccCCcCC--------------------------------------------
Q 006368 245 WLKE----------GLKVRCITRDLKWGVPVPLERF-------------------------------------------- 270 (648)
Q Consensus 245 ~l~~----------gl~d~~IsR~~~WGi~vP~~~~-------------------------------------------- 270 (648)
.|++ .++|||||||+.||+|+|.+.+
T Consensus 400 ~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (805)
T PRK00390 400 WLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKC 479 (805)
T ss_pred HHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCcccc
Confidence 2221 1569999999999999994310
Q ss_pred ------CCceeeeeecccchHHHhcc-c----c--chHHHhhcCCCCCcceEEEEeccccchhH---hHHHHHhhhcCC-
Q 006368 271 ------KEKVFYVWFDAPIGYVSITS-C----Y--TNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLLGTGE- 333 (648)
Q Consensus 271 ------~~~v~yVWfDa~~~yis~~~-~----~--~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i~~pa~l~a~g~- 333 (648)
+..|++||||+.+-|+...- . . .+.|..|+ |.| +.+.|.|++..|. -+|...|...|.
T Consensus 480 g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~ 554 (805)
T PRK00390 480 GKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWL--PVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLV 554 (805)
T ss_pred CCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcC--CCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34688999999765554321 0 1 23566666 567 7999999875553 356666665542
Q ss_pred -CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhH
Q 006368 334 -NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (648)
Q Consensus 334 -~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N 412 (648)
.-.|++.+++|||+ |||||+||+|+|.++++ .||+|++|||++..+++++|++|+++.+.++ ....+++.|
T Consensus 555 ~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~-~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--~~~l~kl~~ 626 (805)
T PRK00390 555 SSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIE-KYGADTARLFEMFAGPPEKDLEWSDSGVEGA--YRFLQRVWR 626 (805)
T ss_pred cCCcchhhheecCcE-----EeCCCCCCCCCHHHHHH-HcChHHHHHHHHhcCCccCCcccCHHHHHHH--HHHHHHHHH
Confidence 12356899999999 99999999999999998 7999999999998778999999999999887 567888888
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006368 413 FINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFW 492 (648)
Q Consensus 413 ~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw 492 (648)
+++...+... .++ ......|++++..++.+++++.++|++|+|+.|+..+++|++..++|++
T Consensus 627 ~~~~~~~~~~-----~~~--------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~----- 688 (805)
T PRK00390 627 LVVDAKGEAG-----ALD--------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAED----- 688 (805)
T ss_pred HHHHhhhccc-----ccC--------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-----
Confidence 8777322111 011 1123578999999999999999999999999999999999998888861
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 493 KLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 493 ~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
.....++.++++.+..+|+||||++|+++|+.|+.
T Consensus 689 ----------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~ 723 (805)
T PRK00390 689 ----------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH 723 (805)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 01233556788999999999999999999999974
No 32
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2e-67 Score=610.02 Aligned_cols=450 Identities=19% Similarity=0.300 Sum_probs=363.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.+++++||++++|||||.+||||+++ |+.+||++||+||+||+|+|++|+|+||+||+.+|+++|++|.++++++.+.+
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~-~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~ 104 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRN-YTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANM 104 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHH-HHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45677999999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 99 ~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
++++++||+++| .+++|++|.|.+.+|++|.+|+++|+||++.+.++||+.|+++|++.+|..
T Consensus 105 ~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~--------------- 169 (842)
T TIGR00396 105 KKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDS--------------- 169 (842)
T ss_pred HHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhh---------------
Confidence 999999999886 589999999999999999999999999999999999999999999987631
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChH-------------------
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN------------------- 237 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~------------------- 237 (648)
+++|++||.+++.++.+||||++++|.++|.+++++... ||.+
T Consensus 170 ---------------~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~---wp~~v~~~q~~wig~s~g~~i~f 231 (842)
T TIGR00396 170 ---------------DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDH---WPESVKEMQRNWIGKSEGVEITF 231 (842)
T ss_pred ---------------cCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhcc---ccHHHHHHHHhcccccceEEEEE
Confidence 135778899999999999999999999988886543320 1100
Q ss_pred --------------------------------------------------------------------------------
Q 006368 238 -------------------------------------------------------------------------------- 237 (648)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (648)
T Consensus 232 ~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~ 311 (842)
T TIGR00396 232 KIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLT 311 (842)
T ss_pred EcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCC
Confidence
Q ss_pred -----------------------------------------------------------------------------HHH
Q 006368 238 -----------------------------------------------------------------------------AIQ 240 (648)
Q Consensus 238 -----------------------------------------------------------------------------~~~ 240 (648)
+.+
T Consensus 312 ~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~ 391 (842)
T TIGR00396 312 GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEARE 391 (842)
T ss_pred CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHH
Confidence 001
Q ss_pred HHHHHHhc----------ccccceeeeccCCCcccCCcCC----------------------------------------
Q 006368 241 ATHAWLKE----------GLKVRCITRDLKWGVPVPLERF---------------------------------------- 270 (648)
Q Consensus 241 ~~~~~l~~----------gl~d~~IsR~~~WGi~vP~~~~---------------------------------------- 270 (648)
.+.++|.+ .|+|||||||+.||+|+|.+.+
T Consensus 392 ~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~ 471 (842)
T TIGR00396 392 AIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNV 471 (842)
T ss_pred HHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcC
Confidence 11111211 2569999999999999997310
Q ss_pred -----------CCceeeeeecccchHHHhc-c---cc---chHHHhhcCCCCCcceEEEEeccccchhH---hHHHHHhh
Q 006368 271 -----------KEKVFYVWFDAPIGYVSIT-S---CY---TNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLL 329 (648)
Q Consensus 271 -----------~~~v~yVWfDa~~~yis~~-~---~~---~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i~~pa~l~ 329 (648)
+..|++||||+.+.|+..+ . .+ .+.+..|+ |.| +++.|.|++..|. -+|...|.
T Consensus 472 ~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD---~yi~G~dhailHLlyaRf~~~~l~ 546 (842)
T TIGR00396 472 TCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWL--PVD---LYIGGAEHAILHLLYARFWHKFLY 546 (842)
T ss_pred cCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccC--CCc---EeeccHHHHHHHHHHHHHHHHHHH
Confidence 2357889999887666421 1 11 12355455 567 7999999975553 33666665
Q ss_pred hcCC--CcccCceEEeeceeec-----CCc---------------------------cccccCCcccChhhhhhcCCCch
Q 006368 330 GTGE--NWTLMKTISVTEYLNY-----ESG---------------------------KFSKSKGIGVFGNDAKDTNIPVE 375 (648)
Q Consensus 330 a~g~--~~~~p~~~~~hg~l~~-----~G~---------------------------KMSKS~gN~I~~~~~l~~~~~~d 375 (648)
..|. .-.|++++++||++.- +|+ |||||+||+|+|.++++ .||+|
T Consensus 547 ~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~-~ygaD 625 (842)
T TIGR00396 547 DIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK-KHGAD 625 (842)
T ss_pred hccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH-HcCch
Confidence 5442 1235689999999975 788 99999999999999999 79999
Q ss_pred hHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 006368 376 VWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKY 455 (648)
Q Consensus 376 ~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~ 455 (648)
++|||+++.+++.+|++|+++.+..+ ....+++.|+++++...+.. +.. ++. ......|++++..++.+
T Consensus 626 alRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-----~~~-~~~---~~l~~~d~~il~~l~~~ 694 (842)
T TIGR00396 626 ALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-----KTY-LTP---TILEEAQKELRRDVHKF 694 (842)
T ss_pred HHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-----ccc-CCc---ccCCHHHHHHHHHHHHH
Confidence 99999997778889999999999876 67889999999887654432 110 110 12345789999999999
Q ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 006368 456 VEQYLEAMEKVK-LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQ 534 (648)
Q Consensus 456 ~~~v~~a~d~~~-~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~ 534 (648)
++.+.++|++|+ |+.|++.+++|++...+|.. . .++.+++..+..||+||+||+|++||+.
T Consensus 695 i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~---------------~---~~l~~~l~~ll~lLaPf~PhiaEElW~~ 756 (842)
T TIGR00396 695 LKKVTEDLEKLESFNTAISAMMILLNALYKAKK---------------D---ALYLEYLKGFLTVLSPFAPHLAEELWEK 756 (842)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh---------------H---HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999988 99999999999976554321 0 2455788899999999999999999999
Q ss_pred hCC
Q 006368 535 LNL 537 (648)
Q Consensus 535 L~~ 537 (648)
|+.
T Consensus 757 l~~ 759 (842)
T TIGR00396 757 LGS 759 (842)
T ss_pred hCC
Confidence 984
No 33
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-66 Score=604.50 Aligned_cols=450 Identities=18% Similarity=0.302 Sum_probs=351.1
Q ss_pred CCCCcEEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
.++++|||++++|||||. +||||+++ |+.+||++||+||+||+|+|++|+|+||+||+.+|.+.|..|+++++++.+.
T Consensus 107 ~~k~k~~v~~~~PYpnG~~lHiGH~~~-y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~ 185 (963)
T PLN02563 107 TSKPKFYVLDMFPYPSGAGLHVGHPEG-YTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185 (963)
T ss_pred CCCCCEEEEeCCCCCCCcccchhhHHH-HHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHH
Confidence 356789999999999997 99999998 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCC
Q 006368 98 HKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARG 175 (648)
Q Consensus 98 ~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g 175 (648)
+++++++||+++| .+++|++|.|.+.+|++|.+|+++|+||++...++||+.|++.|++.+
T Consensus 186 ~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~E----------------- 248 (963)
T PLN02563 186 FRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE----------------- 248 (963)
T ss_pred HHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHH-----------------
Confidence 9999999999987 799999999999999999999999999999999999999998888644
Q ss_pred ccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC--------------------------
Q 006368 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-------------------------- 229 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-------------------------- 229 (648)
+++++|++||++++.++..||||++++|+++|+++++...
T Consensus 249 --------------v~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~ 314 (963)
T PLN02563 249 --------------VVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVL 314 (963)
T ss_pred --------------hhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEec
Confidence 4566789999999999999999999999999998863211
Q ss_pred --------C-CCCC--Ch--------------H--H------------HHHHHH-------------------H------
Q 006368 230 --------V-AGSW--SQ--------------N--A------------IQATHA-------------------W------ 245 (648)
Q Consensus 230 --------~-~~~~--~~--------------~--~------------~~~~~~-------------------~------ 245 (648)
. ...| ++ . + ...+.. +
T Consensus 315 ~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~ 394 (963)
T PLN02563 315 DGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAI 394 (963)
T ss_pred CccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEe
Confidence 0 0000 00 0 0 000000 0
Q ss_pred -------------------------------------------------Hh---------------cc------------
Q 006368 246 -------------------------------------------------LK---------------EG------------ 249 (648)
Q Consensus 246 -------------------------------------------------l~---------------~g------------ 249 (648)
|. +|
T Consensus 395 ~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~ 474 (963)
T PLN02563 395 NPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDI 474 (963)
T ss_pred ccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCccccc
Confidence 20 01
Q ss_pred -----------------------------cccceeeeccCCCcccCCcCC------------------------------
Q 006368 250 -----------------------------LKVRCITRDLKWGVPVPLERF------------------------------ 270 (648)
Q Consensus 250 -----------------------------l~d~~IsR~~~WGi~vP~~~~------------------------------ 270 (648)
|+|||||||+.||.|+|.+.+
T Consensus 475 ~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g 554 (963)
T PLN02563 475 NGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTG 554 (963)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCC
Confidence 679999999999999997421
Q ss_pred ------------------------CCceeeeeecccchHHHhcc-c-----cchHHHhhcCCCCCcceEEEEeccccchh
Q 006368 271 ------------------------KEKVFYVWFDAPIGYVSITS-C-----YTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (648)
Q Consensus 271 ------------------------~~~v~yVWfDa~~~yis~~~-~-----~~~~~~~~w~~p~~~~~i~~~GkDi~~fH 320 (648)
+..|++|||++.+-|+..+- . +..+..++|- |.| +++.|.||.-.|
T Consensus 555 ~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~-PvD---~yigG~dhailH 630 (963)
T PLN02563 555 EPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWM-PVD---LYVGGAEHAVLH 630 (963)
T ss_pred CCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcC-CCc---EeeccHHHHhhH
Confidence 12477899998877765321 0 1112334454 677 799999997555
Q ss_pred ---HhHHHHHhhhcCC--CcccCceEEeeceee----------cCCc---------------------------------
Q 006368 321 ---TVMFPSTLLGTGE--NWTLMKTISVTEYLN----------YESG--------------------------------- 352 (648)
Q Consensus 321 ---~i~~pa~l~a~g~--~~~~p~~~~~hg~l~----------~~G~--------------------------------- 352 (648)
+-+|-..|+..|+ .-.|+++++.||+++ .+|+
T Consensus 631 LlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (963)
T PLN02563 631 LLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLK 710 (963)
T ss_pred hHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccc
Confidence 4456555555552 113678999999996 4566
Q ss_pred ------------cccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHh
Q 006368 353 ------------KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSF 420 (648)
Q Consensus 353 ------------KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~ 420 (648)
|||||+||+|+|.++++ +||+|+||||++..+|..+|.+|+.+.+... ..+++++.|++......
T Consensus 711 ~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~--~rfL~rlwn~~~~~~~~ 787 (963)
T PLN02563 711 DDPSIRLIARAHKMSKSRGNVVNPDDVVS-EYGADSLRLYEMFMGPLRDSKTWSTSGVEGV--HRFLGRTWRLVVGAPLP 787 (963)
T ss_pred cCCcccccccccccccccCCcCCHHHHHH-HcCcHHHHHHHHhCCCcccccccCHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 99999999999999999 7999999999999888889999998887765 34556666665432110
Q ss_pred hhCCCCCCCC-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCh
Q 006368 421 IAKPPGQGYG-SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499 (648)
Q Consensus 421 ~~k~~~~~~~-~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~ 499 (648)
.. .+. +..+ .....+++++..++.+++++.++|++|+|+.|+..+|+|++..+. |. .
T Consensus 788 -~~----~~~~~~~~-----~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~-----~ 845 (963)
T PLN02563 788 -DG----SFRDGTVV-----TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD-----K 845 (963)
T ss_pred -cc----ccCccccc-----cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch-----H
Confidence 00 111 1111 111346788999999999999999999999999999999976542 21 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 500 ~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
...++++.+.+||+||||++|++||++||.
T Consensus 846 --------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~ 875 (963)
T PLN02563 846 --------VPREAIEPFVLLLSPYAPHLAEELWFRLGH 875 (963)
T ss_pred --------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCC
Confidence 124678899999999999999999999984
No 34
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.7e-67 Score=553.70 Aligned_cols=303 Identities=22% Similarity=0.386 Sum_probs=272.4
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCCH-------------
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP------------- 87 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~~------------- 87 (648)
++|+|.+|||||||.+|||||++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~-~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALN-KILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHH-HHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 36999999999999999999998 56799999999999999999999999999999999987 8765
Q ss_pred ---HHHHHHHHHHHHHHHhhcCc--ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccccc
Q 006368 88 ---KEICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (648)
Q Consensus 88 ---~e~~~~~~~~~~~~~~~l~i--~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (648)
+++++++++.|++++++||| ++|.+++|++++|.+.++++|.+|+++|+||++.+.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 79999999999999999999 567899999999999999999999999999999999987
Q ss_pred CCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHH
Q 006368 163 CPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQAT 242 (648)
Q Consensus 163 cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (648)
+++.++++||||+|+++++.+.+++++... .|+++++++
T Consensus 144 --------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~---~P~~~~~~~ 182 (338)
T cd00818 144 --------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVNW---IPEWVKNRF 182 (338)
T ss_pred --------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCcE---ECHHHHHHH
Confidence 357789999999999999999999987432 488888999
Q ss_pred HHHHhcccccceeeeccCCCcccCCcCCC----------CceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceE
Q 006368 243 HAWLKEGLKVRCITRDLKWGVPVPLERFK----------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELY 309 (648)
Q Consensus 243 ~~~l~~gl~d~~IsR~~~WGi~vP~~~~~----------~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i 309 (648)
.+|+++ |+||||||++.||+|+|.+..+ ++|+||||||+++|++.. +|+ .+|+.||+ .+ +
T Consensus 183 ~~~l~~-l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~-~~~~~~~~~~~~~p--~d---~ 255 (338)
T cd00818 183 GNWLEN-RRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL-HYPFENEDFEELFP--AD---F 255 (338)
T ss_pred HHHHhc-chhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc-CCCCcchhhhccCC--Ce---E
Confidence 999975 9999999999999999985433 789999999999999875 554 36888995 45 7
Q ss_pred EEEeccccc--hhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC
Q 006368 310 QFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (648)
Q Consensus 310 ~~~GkDi~~--fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~ 386 (648)
+++|+||++ ||+++||+++++ |. .+|+.+++|||++ .+|+|||||+||+|++.|+++ .|++|++||||++.+|
T Consensus 256 ~~~GkDii~~wf~~~~~~~~~~~-~~--~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~-~~~~D~~R~~l~~~~~ 331 (338)
T cd00818 256 ILEGSDQTRGWFYSLLLLSTALF-GK--APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD-KYGADALRLWVASSDV 331 (338)
T ss_pred EeecchHHhHHHHHHHHHHHHhc-CC--CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH-HcCcHHHHHHHHhCCC
Confidence 999999996 999999998754 33 3679999999987 589999999999999999998 7999999999999898
Q ss_pred CCCCccc
Q 006368 387 EVSDTLF 393 (648)
Q Consensus 387 ~~~d~~f 393 (648)
.++|++|
T Consensus 332 ~~~d~~~ 338 (338)
T cd00818 332 YAEDLRF 338 (338)
T ss_pred ccCCCCC
Confidence 9999876
No 35
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.6e-65 Score=592.86 Aligned_cols=461 Identities=19% Similarity=0.268 Sum_probs=365.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---------------CC---------CHHHHHH
Q 006368 37 PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------NC---------SPKEICD 92 (648)
Q Consensus 37 ~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------------g~---------~~~e~~~ 92 (648)
|||||+++ ++.+|+++||+||+||+|+|++|+|+||+||+..|++. |+ .|.++++
T Consensus 1 lHiGH~~~-~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRT-YTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHH-HHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 79999998 67799999999999999999999999999999988642 33 5678899
Q ss_pred HHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc---------
Q 006368 93 KYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG--------- 161 (648)
Q Consensus 93 ~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g--------- 161 (648)
++...+++++++||++.| +-+.|++|.|.+.+++.|.+|+++|+||++...+.||+.|++.+++.++..
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 999999999999999887 456699999999999999999999999999999999999999999987641
Q ss_pred -----------------cCCC-----------Cccc----------------------c--------------C------
Q 006368 162 -----------------TCPF-----------EGCN----------------------Y--------------E------ 171 (648)
Q Consensus 162 -----------------~cp~-----------~~c~----------------------~--------------~------ 171 (648)
|.|+ |... + +
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 1121 0000 0 0
Q ss_pred -----------------------------CC-----------CC------------ccc---------------------
Q 006368 172 -----------------------------SA-----------RG------------DQC--------------------- 178 (648)
Q Consensus 172 -----------------------------~~-----------~g------------~~c--------------------- 178 (648)
++ .+ ..|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 00 11 011
Q ss_pred --c---------------ccCCCCCc-c----------------------------cc-CCCcCCCCCCCcEEee-ccce
Q 006368 179 --E---------------NCGKLLNA-T----------------------------DL-KDPKCKVCRNAPQIRD-TNHL 210 (648)
Q Consensus 179 --~---------------~cg~~l~~-~----------------------------el-~~~~~~~~g~~~~~~~-~~~~ 210 (648)
+ .-|++.+. . ++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0 11222210 0 11 1378889999999876 5999
Q ss_pred eeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCc------CCCCceeeeeeccc
Q 006368 211 FLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE------RFKEKVFYVWFDAP 282 (648)
Q Consensus 211 f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~------~~~~~v~yVWfDa~ 282 (648)
|++++ .+++.+.+.++++.. +|+..++++.+||+. ++||||||++.||+|+|.+ ...+.++|+|+++.
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~~---~P~~~~~~~~~~l~~-l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i 475 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNMEI---IPEEYRKEFENTIDW-LKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTI 475 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCEE---ECHHHHHHHHHHHhh-hhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHH
Confidence 99997 799999999987653 477788899999995 9999999999999999953 13467899999998
Q ss_pred chHHHhc------------------c----------cc--------chHHHhhcCCCCCcceEEEEeccccchhHhHHHH
Q 006368 283 IGYVSIT------------------S----------CY--------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPS 326 (648)
Q Consensus 283 ~~yis~~------------------~----------~~--------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa 326 (648)
..|+... . ++ .++|..|| |.| +|++|+||++||..+| .
T Consensus 476 ~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~--P~D---~~~~GkDii~~Hl~~~-~ 549 (897)
T PRK12300 476 AHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWY--PVD---WRHSGKDLIPNHLTFF-I 549 (897)
T ss_pred HHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccC--Cce---EEEeeeccCccHHHHH-H
Confidence 8776531 0 11 12466677 456 8999999999999999 5
Q ss_pred HhhhcCCC-cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHH
Q 006368 327 TLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (648)
Q Consensus 327 ~l~a~g~~-~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~ 405 (648)
+++.+..+ -+.|+++++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+.+. .+
T Consensus 550 ~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~-~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--~~ 626 (897)
T PRK12300 550 FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIE-EYGADVVRLYLTSSAELLQDADWREKEVESV--RR 626 (897)
T ss_pred HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHH-HcChHHHHHHHHhCCCCCCCCccCHHHHHHH--HH
Confidence 55554332 24679999999999999999999999999999999 7999999999998888899999999987665 34
Q ss_pred HHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHH
Q 006368 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM-SISSEGNA 484 (648)
Q Consensus 406 l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~-~l~~~~N~ 484 (648)
+.+++.|++.++... .+. ......|+++++.++.+++.+.++|++|+++.|++.++ .+++.+|.
T Consensus 627 ~l~r~~~~~~~~~~~------------~~~---~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~ 691 (897)
T PRK12300 627 QLERFYELAKELIEI------------GGE---EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRW 691 (897)
T ss_pred HHHHHHHHHHHHhcC------------CCc---cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 455555554443221 111 12345789999999999999999999999999998886 67788999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
|++..+| .+..++.++++.+++||+||||++|++||+.||.+
T Consensus 692 Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 692 YLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9987654 34567788999999999999999999999999853
No 36
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.3e-64 Score=530.18 Aligned_cols=293 Identities=28% Similarity=0.466 Sum_probs=268.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC-------------CHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC-------------SPKE 89 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~-------------~~~e 89 (648)
+|+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++++. +|.+
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~-~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALT-HIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 4899999999999999999998 7889999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCc
Q 006368 90 ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167 (648)
Q Consensus 90 ~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~ 167 (648)
+++++.+.|++++++|||++| .|++|+++.|...|+++|.+|+++|+||++.+.+
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999998 9999999999999999999999999999876554
Q ss_pred cccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHh
Q 006368 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK 247 (648)
Q Consensus 168 c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (648)
+.+.+||++++++++++.+++++++ .+|++.++++.+||+
T Consensus 137 -------------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~---~~p~~~~~~~~~~l~ 176 (312)
T cd00668 137 -------------------------------------RITEQWFFDMPKFKEKLLKALRRGK---IVPEHVKNRMEAWLE 176 (312)
T ss_pred -------------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC---cCChHHHHHHHHHHh
Confidence 3577899999999999999998765 367888889999999
Q ss_pred cccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 248 EGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 248 ~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
+++ ||||||+++||+|+| ++++||||||+++|++.+ ++. ..|..||+ .+ +|++|+||++||..+|
T Consensus 177 ~~~-d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~-~~~~~~~~~~~~~~--~d---i~~~G~D~~~~h~~~~ 244 (312)
T cd00668 177 SLL-DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSL-GYPEEKEWFKDSYP--AD---WHLIGKDILRGWANFW 244 (312)
T ss_pred CCC-CeEEeccCCCCCcCC-----cccccchhhccHHHHHHc-CCCccchhhhhcCC--ce---EEEEecchhhhHHHHH
Confidence 877 999999999999999 679999999999999886 332 35788884 45 8999999999999999
Q ss_pred HHHhhhcCCCcccCceEEeeceeecCC-ccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 325 PSTLLGTGENWTLMKTISVTEYLNYES-GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 325 pa~l~a~g~~~~~p~~~~~hg~l~~~G-~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
++++++++.. .+|+.+++|||++.+| +|||||+||+|++.++++ .+++|++||||++.+|+++|.+|
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~-~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 245 ITMLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE-KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHHhcCC-CCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-HcCcHHHHHHHHhcCCccCCCCC
Confidence 9999988753 4688999999999887 999999999999999999 69999999999998989899876
No 37
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-64 Score=528.98 Aligned_cols=293 Identities=24% Similarity=0.416 Sum_probs=265.6
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+++||+|+|||||.+||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++++++.+.|++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~-~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRT-YTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHH-HHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999997 788999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 103 KWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 103 ~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++|||++| .+++|++|+|.+.++++|.+|+++|+||++.+.++||.
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~-------------------------------- 127 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCK-------------------------------- 127 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeC--------------------------------
Confidence 99999998 57899999999999999999999999999999999971
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeec--hhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~ 258 (648)
.++||||+| ++|++.+.++++++. .||++.++.+.+|++ |||+
T Consensus 128 -------------------------~~~~~f~~l~~~~~~~~l~~~l~~~~---~~p~~~~~~~~~~l~-------isR~ 172 (314)
T cd00812 128 -------------------------LLDQWFLKYSETEWKEKLLKDLEKLD---GWPEEVRAMQENWIG-------CSRQ 172 (314)
T ss_pred -------------------------ccceEEEEcCcHHHHHHHHHHHHhcC---cCCHHHHHHHHHHhe-------eeee
Confidence 467999999 999999999998864 489999999999986 9999
Q ss_pred cCCCcccCCcCCCCceeeeeecccc---hHHHhccc-c---------chHHHhhcCCCCCcceEEEEeccccchhH---h
Q 006368 259 LKWGVPVPLERFKEKVFYVWFDAPI---GYVSITSC-Y---------TNEWEQWWKNPENVELYQFMGKDNVPFHT---V 322 (648)
Q Consensus 259 ~~WGi~vP~~~~~~~v~yVWfDa~~---~yis~~~~-~---------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i 322 (648)
+.||||+|. ++++|||||+++ +|+++... . .+.|..||| .| +|++|+|+++||+ +
T Consensus 173 ~~wGipvP~----~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p--~d---i~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 173 RYWGTPIPW----TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYP--VD---IYIGGKEHAPNHLLYSR 243 (314)
T ss_pred cCCcCCcCc----ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCC--Ce---eeecchhHHHHHHHHHH
Confidence 999999996 689999999997 77765421 1 234777884 45 8999999999997 8
Q ss_pred HHHHHhhhcCC-CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 323 MFPSTLLGTGE-NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 323 ~~pa~l~a~g~-~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
+||++|+++|+ ...+|+++.+||||+++|+|||||+||+|++.|+++ .+++|++||||++.++ .|.+|+|
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~-~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIK-KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHH-HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 99999999985 013678999999999999999999999999999999 6999999999998777 8888875
No 38
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=9.2e-63 Score=552.72 Aligned_cols=497 Identities=16% Similarity=0.162 Sum_probs=352.9
Q ss_pred CCCCCCCCCCCCCCC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHH-hCCCceeeecCCcccchHHHHHHHHcC
Q 006368 7 ENPAAPPPKLPIPGK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCR-LRGYNAIYICGTDEYGTATETKAMEDN 84 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r-~~G~~v~~v~g~D~~G~ki~~~A~~~g 84 (648)
-+||+|++|+|..++ -++|||+ ||||+.+||||||+ ||.+||++||+| ..||+|.||+|+||||+||+.+|+++|
T Consensus 45 tlt~~k~~f~p~~~~~v~~Y~CG--PTvYd~~HiGhart-~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g 121 (651)
T PTZ00399 45 SLTGGKVEFVPQNGRQVRWYTCG--PTVYDSSHLGHART-YVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEK 121 (651)
T ss_pred CCCCCccccccCCCCeeEEEEeC--CCccCCcccccchH-HHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhC
Confidence 478999999997654 3577776 55669999999998 789999999999 779999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 85 CS-PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 85 ~~-~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
++ +.+++++|.+.|.++++.|||.++.|++++ .+|...+++++++|+++|++|++.++
T Consensus 122 ~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gs-------------------- 180 (651)
T PTZ00399 122 LSIFLELARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGS-------------------- 180 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCe--------------------
Confidence 99 999999999999999999999997776655 59999999999999999999976444
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
+||++++|.+. ...|.+.. |.+..+...
T Consensus 181 ----------------------------------------------vyFd~~~f~~~-~~~Yg~L~-----p~~~~~~~~ 208 (651)
T PTZ00399 181 ----------------------------------------------VYFDVEAFRKA-GHVYPKLE-----PESVADEDR 208 (651)
T ss_pred ----------------------------------------------EEEEchhcccc-hhhHHhhC-----hhhcCCHHH
Confidence 46666666554 34444421 111111222
Q ss_pred HHHhcc-cccce-eeec-cC---CCcccCCcCCCCceeeeeecccchHHHhccccchH----HHhhcCCCCCcceEEEEe
Q 006368 244 AWLKEG-LKVRC-ITRD-LK---WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----WEQWWKNPENVELYQFMG 313 (648)
Q Consensus 244 ~~l~~g-l~d~~-IsR~-~~---WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~----~~~~w~~p~~~~~i~~~G 313 (648)
.+..++ +.+.+ ++|+ .+ ||++.|++. . |+ +++|+= -.+|.-+ -.++...|.| ||.+|
T Consensus 209 ~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep--~-----W~-SpwG~G--rPGWHiECsam~~~~lg~~~D---Ih~gG 275 (651)
T PTZ00399 209 IAEGEGALGKVSGEKRSPNDFALWKASKPGEP--S-----WD-SPWGKG--RPGWHIECSAMASNILGDPID---IHSGG 275 (651)
T ss_pred HhcccCCccccCcCCCCCccHHhhCCCCCCCC--C-----CC-CCCCCC--CCCchHHHHHHHHHHcCCcce---eeccC
Confidence 233343 54544 7883 44 999999873 2 64 788762 2355321 2223333455 89999
Q ss_pred ccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 314 kDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
.|++|+|+..--|.-.|+--..+..++++++|||+++|+|||||+||||+|.++++ .|++|++|||||+ .++++|++|
T Consensus 276 ~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLe-kygaDaLR~~lLs-~~~~~dldF 353 (651)
T PTZ00399 276 IDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALS-KYTARQIRLLFLL-HKWDKPMNY 353 (651)
T ss_pred CCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHH-HcChHHHHHHHHh-cCCCCCCcc
Confidence 99999998777777666432112335555559999999999999999999999999 7999999999997 588999999
Q ss_pred cHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Q 006368 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGL 472 (648)
Q Consensus 394 s~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al 472 (648)
|++.+.++.|. .+.+.|++.|+.+++.+. . .+.. ....+.|++|+..+..+.+.+.++| |+|+++.|+
T Consensus 354 S~e~l~~a~~~--~~~l~n~~~rl~s~l~~~----~---~~~~--~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al 422 (651)
T PTZ00399 354 SDESMDEAIEK--DKVFFNFFANVKIKLRES----E---LTSP--QKWTQHDFELNELFEETKSAVHAALLDNFDTPEAL 422 (651)
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHhhc----c---cccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999888554 467899999988776541 1 1111 1124567889999999999999999 889999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccc--------------hHHHHHHHH---Hh
Q 006368 473 KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM--------------PSFSVEVNK---QL 535 (648)
Q Consensus 473 ~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~--------------P~~s~~i~~---~L 535 (648)
..|++|++.+|.|++.. .......+..+..++..++.+|++.-..-| |. .+.+.+ .+
T Consensus 423 ~~L~eLv~~~N~yi~~~-----~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~~~~~~~~~~-i~~l~~~R~~~ 496 (651)
T PTZ00399 423 QALQKLISATNTYLNSG-----EQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQNSTSENFKPL-LEALLRFRDEV 496 (651)
T ss_pred HHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHhcccCCcchhhccccccccchhhhHHH-HHHHHHHHHHH
Confidence 99999999999999731 001122344455666667777776311100 11 111110 01
Q ss_pred C---CCC----------ccccccccccCcccccCCCCccCCCCCccCC---CCCCCCCCChHHHHHHHHHhccchhH---
Q 006368 536 N---LQP----------EKHISLCDEKGDVDRARRPWEIIPAGHKIGS---PNPLFKELKDDEVEFFRSKFAGSQAD--- 596 (648)
Q Consensus 536 ~---~~~----------~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~---~~~Lf~~i~~~~~~~~~~~~~~~~~~--- 596 (648)
. ... ...+..+| .+|+..+...|+.|.| +.+++++.+++++.+++++.+..+++
T Consensus 497 R~~a~~~~~~~~~~~~~~~~~~~~D-------~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (651)
T PTZ00399 497 RDAAKAEMKLISLDKKKKQLLQLCD-------KLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRL 569 (651)
T ss_pred HHHHHhccccccchhhhhhHHHHHH-------HHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 01123333 6676558889999976 23699999988877665444332222
Q ss_pred -HHHHHHHHHHHHHHHHhhhccc
Q 006368 597 -RIIRAEAEAAKTAEQLKKTKIS 618 (648)
Q Consensus 597 -~~~~~~~~~~~~~~~~~~~k~~ 618 (648)
+++++++++++++|++++++++
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~i~ 592 (651)
T PTZ00399 570 RKLKKQEEKKKKELEKLEKAKIP 592 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 2222344566677777777777
No 39
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-60 Score=558.80 Aligned_cols=479 Identities=17% Similarity=0.212 Sum_probs=347.3
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-------CCC-------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCS------- 86 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-------g~~------- 86 (648)
+++|+||.|+||+||.+||||++| ++.+|+++||+||+|++|+|++|+|+||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t-~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFS-LSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHH-HHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 367999999999999999999999 56799999999999999999999999999999998652 322
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHhhcC
Q 006368 87 ------------------------------------------------------------PKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 87 ------------------------------------------------------------~~e~~~~~~~~~~~~~~~l~ 106 (648)
|..+++.+...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 12234444567789999999
Q ss_pred cccc--cccCCCc--hHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc----------------------
Q 006368 107 ISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE---------------------- 160 (648)
Q Consensus 107 i~~D--~f~rT~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~---------------------- 160 (648)
++.| +-+.|++ |.|...|++.|.+|+++|+||++.+.+.||+.|++.++|.+++
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~ 282 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFP 282 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcch
Confidence 8876 4456777 9999999999999999999999999999999999999996432
Q ss_pred -------c---------cCCC-----------C-----------c--------------c--------cc----------
Q 006368 161 -------G---------TCPF-----------E-----------G--------------C--------NY---------- 170 (648)
Q Consensus 161 -------g---------~cp~-----------~-----------~--------------c--------~~---------- 170 (648)
+ +.|+ | + + .+
T Consensus 283 ~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~ 362 (1084)
T PLN02959 283 GKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYD 362 (1084)
T ss_pred hhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHH
Confidence 1 1111 0 0 1 00
Q ss_pred -------------C----------------------C--------C-------------CCc--------------cccc
Q 006368 171 -------------E----------------------S--------A-------------RGD--------------QCEN 180 (648)
Q Consensus 171 -------------~----------------------~--------~-------------~g~--------------~c~~ 180 (648)
+ + + +|- ..+.
T Consensus 363 L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g 442 (1084)
T PLN02959 363 LIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPE 442 (1084)
T ss_pred hCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCC
Confidence 0 0 0 010 0111
Q ss_pred c-------------------------------------CCCCCcc---------------------------ccCCCcCC
Q 006368 181 C-------------------------------------GKLLNAT---------------------------DLKDPKCK 196 (648)
Q Consensus 181 c-------------------------------------g~~l~~~---------------------------el~~~~~~ 196 (648)
+ |.+.... +-..|+|+
T Consensus 443 ~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~ 522 (1084)
T PLN02959 443 FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMS 522 (1084)
T ss_pred CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEE
Confidence 1 1100000 11247899
Q ss_pred CCCCCcEEeeccceeeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC-----
Q 006368 197 VCRNAPQIRDTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER----- 269 (648)
Q Consensus 197 ~~g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~----- 269 (648)
|||++++...++|||++++ .+++.+.+.++++.. .|+..++...+||.. ++|||||||+.||+|+|.+.
T Consensus 523 R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~---~P~~~~~~~~~wl~~-l~DWciSRQr~wGtpIPWd~~~~ie 598 (1084)
T PLN02959 523 RSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNL---YSDETRHGFEHTLGW-LNQWACSRSFGLGTRIPWDEQFLIE 598 (1084)
T ss_pred CCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEE---ECHHHHHHHHHHHhC-CCceeecccccCCCcCCcccceeec
Confidence 9999999999999999997 789999999987654 377778888999986 89999999999999999310
Q ss_pred -----------C------------------------CCceeeeeecccchHHHhccccc--------hHHHhhcCCCCCc
Q 006368 270 -----------F------------------------KEKVFYVWFDAPIGYVSITSCYT--------NEWEQWWKNPENV 306 (648)
Q Consensus 270 -----------~------------------------~~~v~yVWfDa~~~yis~~~~~~--------~~~~~~w~~p~~~ 306 (648)
+ ...|+++||++.....+. +|+ .+|..|+ |.|
T Consensus 599 slsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t--~~p~~~l~~~r~ef~~~y--P~D- 673 (1084)
T PLN02959 599 SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS--DIPAELLEKMKQEFEYWY--PFD- 673 (1084)
T ss_pred cCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc--CCCHHHHhhhhHHHHhhC--CCe-
Confidence 0 134888999974322211 332 3566666 567
Q ss_pred ceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC
Q 006368 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (648)
Q Consensus 307 ~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~ 386 (648)
+++.|+||+++|..+.-.+..++--.-++|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++|||++..++
T Consensus 674 --l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~-kyGADalRl~la~~~~ 750 (1084)
T PLN02959 674 --LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIE-EFSADATRFALADAGD 750 (1084)
T ss_pred --EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHH-HhCchHHHHHHhhcCC
Confidence 7999999999996543222222111224678999999999999999999999999999999 7999999999998778
Q ss_pred CCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 006368 387 EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (648)
Q Consensus 387 ~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~ 466 (648)
..+|.+|+++.+.+. ...+.|++..+...+... ..+. + . ......|+++++.++.+++.+.++|++|
T Consensus 751 ~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~~--~~~~---~-~--~~~~~~D~wils~l~~~i~~v~~a~e~y 817 (1084)
T PLN02959 751 GVDDANFVFETANAA-----ILRLTKEIAWMEEVLAAE--SSLR---T-G--PPSTYADRVFENEINIAIAETEKNYEAM 817 (1084)
T ss_pred ccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhhh--cccC---C-c--ccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889999999876543 222333332222221110 0111 1 0 1134679999999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 467 KLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 467 ~~~~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+|+.|++..+ +|...-..|.... .... ....++..++..+..||+||||+++++||+.|
T Consensus 818 ~f~~A~~~~~Yel~~~k~~yr~~~-------~~~~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 818 MFREALKSGFYDLQAARDEYRLSC-------GSGG---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred cHHHHHHHHHHHHHHhHHHHhhcc-------ccch---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 9999999743 2332222222111 1111 22446677889999999999999999999988
No 40
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-60 Score=530.79 Aligned_cols=458 Identities=20% Similarity=0.319 Sum_probs=362.7
Q ss_pred CCCCCCCCCCC--CC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 9 PAAPPPKLPIP--GK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 9 ~~~~~~~~~~~--~~-~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
|++...|.+.. ++ ++|||+.+.|||||.+||||.|| |..+||++||+||+||+|+|.||+|..|+|++..|.+.|.
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~-Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~ 96 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCcccc-ccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCC
Confidence 45566677633 22 59999999999999999999999 6779999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+|..++..+.+.++++++.||.++| .-..|+||+|.+.+|++|.+|+++|+||+++..+.||+.|++.|++.+|
T Consensus 97 ~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv---- 172 (814)
T COG0495 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQV---- 172 (814)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCcccccee----
Confidence 9999999999999999999999987 4467899999999999999999999999999999999999998887554
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (648)
++..|+|||.+|+.++-.+|||+++.|.+.|++-+..... .||.+++.+.+
T Consensus 173 ---------------------------~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~--~wPE~Vk~mq~ 223 (814)
T COG0495 173 ---------------------------IDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLAT--LWPETVKGMQR 223 (814)
T ss_pred ---------------------------ecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhcc--CCchhHHHHHH
Confidence 4456889999999999999999999999999887765432 38888888888
Q ss_pred HH------------------------------------------------------------------------------
Q 006368 244 AW------------------------------------------------------------------------------ 245 (648)
Q Consensus 244 ~~------------------------------------------------------------------------------ 245 (648)
+|
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 88
Q ss_pred --------------------------------------------------------------H-hc--------------
Q 006368 246 --------------------------------------------------------------L-KE-------------- 248 (648)
Q Consensus 246 --------------------------------------------------------------l-~~-------------- 248 (648)
+ ..
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~l 383 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVL 383 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceE
Confidence 0 00
Q ss_pred ----------------------------------ccccceeeeccCCCcccCCcC-------------------------
Q 006368 249 ----------------------------------GLKVRCITRDLKWGVPVPLER------------------------- 269 (648)
Q Consensus 249 ----------------------------------gl~d~~IsR~~~WGi~vP~~~------------------------- 269 (648)
.++||.+||++.||.|+|.-.
T Consensus 384 inS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~ 463 (814)
T COG0495 384 INSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGL 463 (814)
T ss_pred eccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccC
Confidence 256899999999999999621
Q ss_pred ----------------C-------CCceeeeeecccchHHHhc----c---cc-chHHHhhcCCCCCcceEEEEeccccc
Q 006368 270 ----------------F-------KEKVFYVWFDAPIGYVSIT----S---CY-TNEWEQWWKNPENVELYQFMGKDNVP 318 (648)
Q Consensus 270 ----------------~-------~~~v~yVWfDa~~~yis~~----~---~~-~~~~~~~w~~p~~~~~i~~~GkDi~~ 318 (648)
+ +..||..|+++.+-|+-.+ . .. .+.|. ||- |.| ++++|+|++.
T Consensus 464 gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~-yW~-PVD---~yigG~ehav 538 (814)
T COG0495 464 GTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFN-YWY-PVD---LYIGGIEHAV 538 (814)
T ss_pred CCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHh-ccc-Chh---eeecchhHHH
Confidence 1 1234456777665443221 0 01 12344 454 677 7899999998
Q ss_pred hh---HhHHHHHhhhcCCCcc---cCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCc
Q 006368 319 FH---TVMFPSTLLGTGENWT---LMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (648)
Q Consensus 319 fH---~i~~pa~l~a~g~~~~---~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~ 391 (648)
.| +.||...|...|. |+ |+++++..|+++. +|+|||||+||+|+|+++++ +||+|++|+|++..+|..+|+
T Consensus 539 lHLly~rF~Hkal~d~g~-~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-~yGADt~Rl~~m~~ap~~~d~ 616 (814)
T COG0495 539 LHLLYFRFFHKALFDEGL-VPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-KYGADTVRLYIMFAAPPEQDL 616 (814)
T ss_pred HHHHHHHHHHHHhcccCc-CCCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-HhCchHHHHHHHhhCChhhCC
Confidence 88 4566666666664 21 3356999999998 79999999999999999999 799999999999999999999
Q ss_pred cccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Q 006368 392 LFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK-VKLKQ 470 (648)
Q Consensus 392 ~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~-~~~~~ 470 (648)
+|+++.+..+ ..+.+.+.+++.+....... .. . .... ..+...+.++.+.+.+.++. +.++.
T Consensus 617 ~W~e~gv~g~--~rfL~r~~~l~~~~~~~~~~---------~~-~--~~~~---~~~~~~~h~~~~~v~~~~e~~~~~nt 679 (814)
T COG0495 617 EWSESGVEGA--RRFLQRVWNLVKEHLEKLVE---------EL-T--KEQG---KEDRWLLHRTIKKVTEDFEARQTFNT 679 (814)
T ss_pred CCChhhhHHH--HHHHHHHHHHHHHhhhcccc---------cc-c--chhh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776 34555555555544332100 00 0 0110 23444555666777788876 88999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 471 GLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 471 al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|+..+|+|++...+|..... .+. .++.+++..+..||+||+||+|+++|+.||.
T Consensus 680 ~i~~~m~l~N~l~~~~~~~~------~~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~ 733 (814)
T COG0495 680 AIAALMELLNALRKYLRRTE------GDR-------KVLREALETWVRLLAPFAPHIAEELWEELGN 733 (814)
T ss_pred HHHHHHHHHHHHHHHHhccc------chH-------HHHHHHHHHHHHHhcccccHHHHHHHHHhcC
Confidence 99999999999998876532 111 4455678899999999999999999999995
No 41
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-56 Score=456.91 Aligned_cols=492 Identities=16% Similarity=0.172 Sum_probs=347.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHH--c
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAME--D 83 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~--~ 83 (648)
.+||.|++|.|..+++ +-+.++.||||+..||||||+ ||+.||++||++++ ||+|.||||++|+++||+.+|++ .
T Consensus 40 slTr~Ke~fip~~~~~-v~wY~CGpTvYD~SHmGHArs-YVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m 117 (586)
T KOG2007|consen 40 SLTRQKEVFIPNNGNK-VTWYICGPTVYDSSHMGHARS-YVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEM 117 (586)
T ss_pred ccccccceeeeCCCCe-EEEEEecCcccchhhhhhhhh-hhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhh
Confidence 4799999999987664 556677799999999999998 89999999999977 99999999999999999999972 3
Q ss_pred CCCHHHHHH---HHHHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCc-cccccc
Q 006368 84 NCSPKEICD---KYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKR-FLADRL 158 (648)
Q Consensus 84 g~~~~e~~~---~~~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~-~l~d~~ 158 (648)
+..|..+.+ .|.++|.+++..|++-. |...|.| +|...+..|++++++||+.|...+++||++..-. +|+.
T Consensus 118 ~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgK-- 193 (586)
T KOG2007|consen 118 GEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGK-- 193 (586)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEecccccchhhh--
Confidence 344433333 57799999999999865 8888888 9999999999999999999999999999987543 1221
Q ss_pred ccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChH
Q 006368 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQN 237 (648)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~ 237 (648)
|. |+. +.+.++. |.....++ .++ ++.-|..
T Consensus 194 ---------L~-----G~~----------~~~~~gE----g~l~ds~K--------------------R~p~DFALWKA- 224 (586)
T KOG2007|consen 194 ---------LV-----GQR----------KNLQEGE----GVLSDSRK--------------------RSPADFALWKA- 224 (586)
T ss_pred ---------hc-----Cch----------hhcccCc----CccccccC--------------------CChhhhhhhhh-
Confidence 00 000 0000000 11110000 000 0001110
Q ss_pred HHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEecccc
Q 006368 238 AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV 317 (648)
Q Consensus 238 ~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~ 317 (648)
-++|.+.| ..+||-..|+|-.| ++..-..+..+..| ||.+|.|..
T Consensus 225 --------sK~gEP~W----eSPWG~GRPGWHIE--------------------CSaMas~~lG~~lD---IH~GG~DL~ 269 (586)
T KOG2007|consen 225 --------SKPGEPSW----ESPWGKGRPGWHIE--------------------CSAMASAILGSQLD---IHGGGIDLA 269 (586)
T ss_pred --------cCCCCCCC----CCCCCCCCCCceee--------------------eHHHHHHhhccccc---eecCccccc
Confidence 13466666 77999999998422 11111122222234 899999999
Q ss_pred chhHhHHHHHhhhcCC--CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccH
Q 006368 318 PFHTVMFPSTLLGTGE--NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (648)
Q Consensus 318 ~fH~i~~pa~l~a~g~--~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~ 395 (648)
|+|+..--|...|.-. +|. ++++++|||+++|+|||||++||||+.++|+ .|+|++||++||+ +.|.+++|||.
T Consensus 270 FPHHeNEiAQ~eA~~~~~~wV--nYflHtGhL~i~g~KMSKSLkNFiTIke~Lk-~~sp~qLRl~fl~-~~wr~~ldYs~ 345 (586)
T KOG2007|consen 270 FPHHENEIAQSEAAFDDSQWV--NYFLHTGHLTINGEKMSKSLKNFITIKEALK-KYSPRQLRLAFLL-HQWRSPLDYSD 345 (586)
T ss_pred CCCcccHHHHHHHHhcCCccc--eeEEEcCeeeeccchhhhhhccceeHHHHHH-hcCHHHHHHHHHH-HHhcCcCCchH
Confidence 9998888887777543 354 6777779999999999999999999999998 8999999999997 78999999999
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Q 006368 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKT 474 (648)
Q Consensus 396 ~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~ 474 (648)
+.|..+ ..++..+.||+.-+.++.+.. .| .....+.+.+|.+.+.....+++.|+ |+|+++.+++.
T Consensus 346 s~m~~a--~q~e~~~~~ff~~~~al~~~~--------~~---~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~ 412 (586)
T KOG2007|consen 346 STMEQA--LQLEKSLNNFFLDVKALLRGA--------KP---FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA 412 (586)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHhcc--------ch---hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH
Confidence 999988 688999999999888877641 11 12345677899999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHH------------hhccchHHH---HHHHHHh---C
Q 006368 475 AMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACL------------LEPFMPSFS---VEVNKQL---N 536 (648)
Q Consensus 475 i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~l------------l~P~~P~~s---~~i~~~L---~ 536 (648)
+.+|++.+|.||.... .......+..+......+++++++. ..|++-.++ +.+-+.+ .
T Consensus 413 ~~~lvs~~N~~i~~~~----~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~ 488 (586)
T KOG2007|consen 413 IRELVSQGNAYIRESG----ERPNSALLKAIASYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKK 488 (586)
T ss_pred HHHHHhhhhHHHHHhc----cccchHHHHHHHHHHHHHHHHhCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998764 0112244555666666666666654 234443333 2222222 1
Q ss_pred CCCccccccccccCcccccCCCCccCCCCCccCC--CCCCCCCCChHHHHHHHHHhccchhHHHHH--HHHHHHHHHHHH
Q 006368 537 LQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGS--PNPLFKELKDDEVEFFRSKFAGSQADRIIR--AEAEAAKTAEQL 612 (648)
Q Consensus 537 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~--~~~Lf~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 612 (648)
.+ +.+.+|| .+|+..++..|+.|++ ++.|.+.++.+++-+.+++.-.+++.+.++ .+.+++++++..
T Consensus 489 ~~--~iL~l~d-------~lR~~~l~~~g~~led~~g~~lvk~v~~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~ 559 (586)
T KOG2007|consen 489 VP--EILELCD-------TLRDSDLLELGVRLEDRKGSTLVKAVDREELLQEREEKTSAEKNKDKEKSDRIREELAAKGI 559 (586)
T ss_pred hH--HHHHHhH-------HHHHhhHHHhhhHHHhCCchHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11 3344555 4565567788999976 568999998777554443322222221111 133444555666
Q ss_pred hhhccc
Q 006368 613 KKTKIS 618 (648)
Q Consensus 613 ~~~k~~ 618 (648)
.+.+++
T Consensus 560 a~~~i~ 565 (586)
T KOG2007|consen 560 ALMKIP 565 (586)
T ss_pred HhhcCC
Confidence 666666
No 42
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.5e-56 Score=503.92 Aligned_cols=363 Identities=23% Similarity=0.363 Sum_probs=270.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC------------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC------------ 85 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~------------ 85 (648)
.++++|+|++||||+||.+||||+++ ++..|+++||+||+|++|+|++|+|+||.||+.++++. |.
T Consensus 20 ~~~~~f~i~~~PPy~nG~lH~GH~~~-~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~ 98 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANGDLHIGHALN-KTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGRE 98 (601)
T ss_dssp TTSGEEEEEE---BTSSS-BHHHHHH-HHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHH
T ss_pred CCCCcEEEEeCCCCCCCcccHHHHHH-HHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccc
Confidence 45778999999999999999999999 56699999999999999999999999999999999875 33
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 86 ----SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 86 ----~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.+.++++++.+.+++++++||++.| ..+.|.+|.|.+.++++|.+|+++|+||++...++||+.|++.|++.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 99 EFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred cchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 2668888999999999999998876 5677999999999999999999999999999999999999999999988
Q ss_pred cc--------------------------cCCC-----------Cc-----------------------------------
Q 006368 160 EG--------------------------TCPF-----------EG----------------------------------- 167 (648)
Q Consensus 160 ~g--------------------------~cp~-----------~~----------------------------------- 167 (648)
+. |.|+ |.
T Consensus 179 ~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 258 (601)
T PF00133_consen 179 EYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKE 258 (601)
T ss_dssp EEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHH
T ss_pred ccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcce
Confidence 62 2222 11
Q ss_pred ---ccc--------------------------------------------------CCCCCccccccCCCCC--------
Q 006368 168 ---CNY--------------------------------------------------ESARGDQCENCGKLLN-------- 186 (648)
Q Consensus 168 ---c~~--------------------------------------------------~~~~g~~c~~cg~~l~-------- 186 (648)
..+ -+..|...+.+|..-.
T Consensus 259 L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 259 LVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp HTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred ecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccH
Confidence 000 0122322222222100
Q ss_pred --------------cc--ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhccc
Q 006368 187 --------------AT--DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGL 250 (648)
Q Consensus 187 --------------~~--el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl 250 (648)
.. +...|+|+|||++++.+..+|||++++++++.+.+.++++... |+..+++..+||.. +
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~---P~~~~~~~~~~i~~-l 414 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFY---PESYRKRFENWIDN-L 414 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEES---SSTCHHHHHHHHHT--
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEE---cccchhhhhhhccc-c
Confidence 00 0124789999999999999999999999999999999988765 44456778899987 8
Q ss_pred ccceeeeccCCCcccCCcCC----------------------------------------------CCceeeeeecccch
Q 006368 251 KVRCITRDLKWGVPVPLERF----------------------------------------------KEKVFYVWFDAPIG 284 (648)
Q Consensus 251 ~d~~IsR~~~WGi~vP~~~~----------------------------------------------~~~v~yVWfDa~~~ 284 (648)
+|||||||+.||+|+|.+.. +..|++||||+.+.
T Consensus 415 ~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~ 494 (601)
T PF00133_consen 415 RDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLW 494 (601)
T ss_dssp -EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTC
T ss_pred ccchhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccCC
Confidence 99999999999999997420 24699999998877
Q ss_pred HHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCC
Q 006368 285 YVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKG 359 (648)
Q Consensus 285 yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~g 359 (648)
+++.. +++ .+|..|+ |.| +.+.|+|++++|-.+.-..-.++- +-.+.+.+++|||+. .+|+|||||+|
T Consensus 495 ~~~~~-~~~~~~~~~~~~~~--P~D---~~~~G~D~~~~W~~~~l~~~~~l~-~~~pfk~v~~hG~vld~~G~KMSKS~G 567 (601)
T PF00133_consen 495 PFAVL-GWPENDREEFEYWY--PVD---LYIEGKDQIRGWFQSSLFLSVALF-GKEPFKKVITHGFVLDEDGRKMSKSKG 567 (601)
T ss_dssp HHHHT-TSTTCSCHHHHHHS--SBS---EEEEEGGGTTTHHHHHHHHHHHHS-SSTSBSEEEEE--EEETTSSB-BTTTT
T ss_pred ccccc-ccccccchhccccC--Ccc---cccCCccchhhHHHHhHhhccccc-cCCchheeeecccccccceeecccCCC
Confidence 66553 443 4677777 567 788999999998554322222222 113568999999987 68999999999
Q ss_pred cccChhhhhhcCCCchhHHHHHhhcCCCCCCcccc
Q 006368 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (648)
Q Consensus 360 N~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs 394 (648)
|+|+|.++++ .||+|++|+|++..++..+|++||
T Consensus 568 Nvi~p~~ii~-~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 568 NVIDPEDIIE-KYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp B--BHHHHHH-HT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cccCHHHHHH-HhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999 799999999999767888999986
No 43
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-53 Score=454.55 Aligned_cols=484 Identities=19% Similarity=0.274 Sum_probs=376.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHH-HHHHHc------CCCHH-----
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE-TKAMED------NCSPK----- 88 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~-~~A~~~------g~~~~----- 88 (648)
+..|.+.+ +||.||||||++. |..||+.||+-+.|.+++|+.|+|+||.||+ .+|.+. .++|.
T Consensus 58 ~~~f~L~d----anG~lhlghalnk-ILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~ 132 (937)
T KOG0433|consen 58 RVEFELKD----ANGNLHLGHALNK-ILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAK 132 (937)
T ss_pred CceEEEec----cCCCccchHHHHH-HHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHH
Confidence 34455565 9999999999996 5699999999999999999999999999999 466432 34554
Q ss_pred --HHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc---
Q 006368 89 --EICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG--- 161 (648)
Q Consensus 89 --e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g--- 161 (648)
.|++...+..++.|+++||..|. -+-|.+|.|...-.++|.+|+++|+||++..+++|+++..+.|++++++.
T Consensus 133 Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~n 212 (937)
T KOG0433|consen 133 ARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDN 212 (937)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcC
Confidence 46667778899999999998773 45699999999999999999999999999999999999999999998872
Q ss_pred -----------------------------------cCCC-----------------------------------------
Q 006368 162 -----------------------------------TCPF----------------------------------------- 165 (648)
Q Consensus 162 -----------------------------------~cp~----------------------------------------- 165 (648)
|.|+
T Consensus 213 H~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe 292 (937)
T KOG0433|consen 213 HQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFE 292 (937)
T ss_pred CcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhh
Confidence 2332
Q ss_pred ------------------CccccC---------------------------------------------------CCCCc
Q 006368 166 ------------------EGCNYE---------------------------------------------------SARGD 176 (648)
Q Consensus 166 ------------------~~c~~~---------------------------------------------------~~~g~ 176 (648)
.+|.|. |.+|.
T Consensus 293 ~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~ 372 (937)
T KOG0433|consen 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGC 372 (937)
T ss_pred hhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCc
Confidence 011110 22333
Q ss_pred cccccCCCCCcc------------------------ccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCC
Q 006368 177 QCENCGKLLNAT------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAG 232 (648)
Q Consensus 177 ~c~~cg~~l~~~------------------------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~ 232 (648)
....-|..++.. ...+|+.||+..|+++|.++|||.++..++....+.+++....
T Consensus 373 yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~- 451 (937)
T KOG0433|consen 373 YTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVA- 451 (937)
T ss_pred eecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhceeC-
Confidence 333333222111 1247999999999999999999999999999999999887753
Q ss_pred CCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC-------------------------------------------
Q 006368 233 SWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER------------------------------------------- 269 (648)
Q Consensus 233 ~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~------------------------------------------- 269 (648)
|.+..+++..++.. .++||||||+.||+|||.-.
T Consensus 452 --P~~~~~rl~~~~~~-R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~ 528 (937)
T KOG0433|consen 452 --PGDSDLRLKQLVTT-RPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEV 528 (937)
T ss_pred --CcchHHHHHHHHcC-CCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhh
Confidence 55556678888875 89999999999999999610
Q ss_pred -----------CCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEecccc--chhHhHHHHHhhhcCCCcc
Q 006368 270 -----------FKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGTGENWT 336 (648)
Q Consensus 270 -----------~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~--~fH~i~~pa~l~a~g~~~~ 336 (648)
....+++||||+....-+.. +...+ ..+| ++..|.|+. +|.+.+-..+ |... ..
T Consensus 529 ~e~~~~a~ey~kgtDimDVWFDSGssWs~v~-~~~~~------~~aD---v~LEG~DQ~rGWFQSsLLTsv--A~q~-kA 595 (937)
T KOG0433|consen 529 REIPDIASEYKKGTDIMDVWFDSGSSWSAVL-DNERE------HVAD---VYLEGVDQFRGWFQSSLLTSV--AVQN-KA 595 (937)
T ss_pred cccchhHHHhccCCceeeeEecCCCcceeec-CCCCC------ccee---eEEecchhcchHHHHHHHHHH--HHhc-cC
Confidence 02368889999754433221 10000 0234 899999996 4554332221 2211 24
Q ss_pred cCceEEeeceee-cCCccccccCCcccChhhhhhcC------CCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHH
Q 006368 337 LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTN------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNN 409 (648)
Q Consensus 337 ~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 409 (648)
|.+.+++|||.. -+|.|||||+||||+|+.+++ + ||+|.||||.+. +....|+...+..+.++ .+-..+
T Consensus 596 PYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~K 671 (937)
T KOG0433|consen 596 PYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIK 671 (937)
T ss_pred CchheeeeeeEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHHH
Confidence 679999999975 789999999999999999997 6 999999999995 67779999999999998 788999
Q ss_pred HhHHHHHHHHhhhCCCCCCCCCC---CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--HHH
Q 006368 410 LGNFINRVLSFIAKPPGQGYGSI---VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE--GNA 484 (648)
Q Consensus 410 l~N~~~R~~~~~~k~~~~~~~~~---~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~--~N~ 484 (648)
+.|.++.+++.+.+ +++. +|. .+..-+|+.++..+.++.+++.+.|++|+|++++..+..+... .|.
T Consensus 672 ~R~T~RfllGnl~d-----~~~~~~~~p~---~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~ 743 (937)
T KOG0433|consen 672 FRNTFRFLLGNLQD-----FDGKQVKFPL---KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAF 743 (937)
T ss_pred HHhHHHHHhhcccc-----cCCccccccc---hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHH
Confidence 99999999999887 4333 332 2345568999999999999999999999999999999998744 899
Q ss_pred HHHhhhhhhhc-cCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 485 YLQESQFWKLY-KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 485 yi~~~~pw~l~-k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
|++..+..... +.+.....++-.++..++..+...++||+|++++++|+.|-..
T Consensus 744 YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 744 YFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred HHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 99988765433 2244555666777778888999999999999999999998743
No 44
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-53 Score=462.93 Aligned_cols=496 Identities=18% Similarity=0.255 Sum_probs=386.7
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----C-C-----C----
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----N-C-----S---- 86 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~----g-~-----~---- 86 (648)
...|.|+.|||+|.|.+|||||.+.. ..|+++||.||.||.|.|+.|+|..|..++.-.++. | + .
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~a-iqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F 152 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVA-IQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEF 152 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHH-HHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHH
Confidence 45688999999999999999999965 499999999999999999999999999877665542 2 3 2
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCccccc--ccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccc
Q 006368 87 ---PKEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG 161 (648)
Q Consensus 87 ---~~e~~~~~~~~~~~~~~~l~i~~D~--f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g 161 (648)
..++-+++...+.+++++||.++|. -.-|.|+...+.|.+.|.+|++.|.||++.+-+.||+.-.+.++|-+|+.
T Consensus 153 ~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995)
T KOG0432|consen 153 LKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995)
T ss_pred HHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence 2345566777899999999999873 33499999999999999999999999999999999999999999987752
Q ss_pred --------------------------------cC---------CC------------CccccC-----------------
Q 006368 162 --------------------------------TC---------PF------------EGCNYE----------------- 171 (648)
Q Consensus 162 --------------------------------~c---------p~------------~~c~~~----------------- 171 (648)
.| |. ..+.|.
T Consensus 233 ~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lP 312 (995)
T KOG0432|consen 233 VEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLP 312 (995)
T ss_pred eecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccc
Confidence 01 10 001111
Q ss_pred -----------------------------------------CCCCccccccCCC------------------------CC
Q 006368 172 -----------------------------------------SARGDQCENCGKL------------------------LN 186 (648)
Q Consensus 172 -----------------------------------------~~~g~~c~~cg~~------------------------l~ 186 (648)
...|.....||.. +.
T Consensus 313 iI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~ 392 (995)
T KOG0432|consen 313 IICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKE 392 (995)
T ss_pred eeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccC
Confidence 2244444455521 01
Q ss_pred ccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccC
Q 006368 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVP 266 (648)
Q Consensus 187 ~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP 266 (648)
+..++-|.|.|+|+.+|..-.+|||++.+....+..+.+++.... ..|+.....-..|+.. .+|||||||+.||-.||
T Consensus 393 ~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~-i~P~~~~k~w~~W~~~-i~DWCiSRQLWWGHrIP 470 (995)
T KOG0432|consen 393 NHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLE-ILPEFHEKEWYRWLEN-IRDWCISRQLWWGHRIP 470 (995)
T ss_pred CCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeE-ECchHHHHHHHHHHhh-ccccchhhhhhhccccc
Confidence 112456899999999999999999999999888888888865532 2466666666788876 89999999999999999
Q ss_pred CcC-----------------------------C----------CCceeeeeecccchHHHhccccch---HHHhhcCCCC
Q 006368 267 LER-----------------------------F----------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPE 304 (648)
Q Consensus 267 ~~~-----------------------------~----------~~~v~yVWfDa~~~yis~~~~~~~---~~~~~w~~p~ 304 (648)
.+. + +..|+++||.+.+-.+|.. |||+ ++..|+|.
T Consensus 471 Ay~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~l-GWP~~t~d~~~fyP~-- 547 (995)
T KOG0432|consen 471 AYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTL-GWPEETKDFKNFYPL-- 547 (995)
T ss_pred eeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhc-CCccccccHHhcCCc--
Confidence 721 0 2478999999988888764 8985 68888864
Q ss_pred CcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhc-------------
Q 006368 305 NVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDT------------- 370 (648)
Q Consensus 305 ~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~------------- 370 (648)
. +--.|.||++|+..-.-.+-+-+.-. .|++.++.||.+. -+|+|||||+||||+|.|+++.
T Consensus 548 s---llETG~DILfFWVaRMvmLg~kLtG~-lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~g 623 (995)
T KOG0432|consen 548 S---LLETGHDILFFWVARMVMLGLKLTGE-LPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSG 623 (995)
T ss_pred h---hhhcCchHHHHHHHHHHHhhhhhcCC-CCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcC
Confidence 3 45589999998655432221222212 4679999999995 8999999999999999999861
Q ss_pred ----------------CC-------CchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCC
Q 006368 371 ----------------NI-------PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427 (648)
Q Consensus 371 ----------------~~-------~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~ 427 (648)
.| |.|+|||.|++...-+.|++++...+... ..++|+++|..++++..+.+
T Consensus 624 NLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~--r~FcNKlWNa~rF~l~~lg~---- 697 (995)
T KOG0432|consen 624 NLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY--RHFCNKLWNATRFALQRLGE---- 697 (995)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH--HHHHHHHHHHHHHHHHhccc----
Confidence 13 89999999998888889999999988764 78999999999999887554
Q ss_pred CCCCCCCCC-C--CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhhhhhhccCChhhH
Q 006368 428 GYGSIVPDA-N--GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDQPSC 502 (648)
Q Consensus 428 ~~~~~~p~~-~--~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~ 502 (648)
+| +|.. . .....-.|+|++..+..+++.+.+.|+.++|..|...+..+. ..|..|++..+|-... .+....
T Consensus 698 ~~---~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~-~~~~~~ 773 (995)
T KOG0432|consen 698 NF---VPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWG-DSEALA 773 (995)
T ss_pred CC---CCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcC-CcHHHH
Confidence 22 2221 1 111112799999999999999999999999999999999886 6699999999984322 233445
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 503 SIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 503 ~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
..+..++..++.....||+||||++++++|++|-
T Consensus 774 ~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 774 YEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 5556777778888889999999999999999984
No 45
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-53 Score=460.95 Aligned_cols=382 Identities=16% Similarity=0.183 Sum_probs=274.6
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc----------chHH
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY----------GTAT 76 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~----------G~ki 76 (648)
-+||+|++|.|..++ ++-+.++.||||+.+||||+|+ ||.+|+++||+|..||+|.||+|++|+ |+||
T Consensus 8 tlt~~ke~f~p~~~~-~v~mYvCGpTvy~~~HiGhar~-~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKi 85 (490)
T PRK14536 8 TLGRQQEEFQPIEHG-HVRLYGCGPTVYNYAHIGNLRT-YVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKM 85 (490)
T ss_pred cCCCCeeccccCCCC-ceEEEeeCCccCCCcccchhHH-HHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHH
Confidence 478999999997543 3444566689999999999998 889999999999999999999855555 9999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccc
Q 006368 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 77 ~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
+.+|+++|++|.+++++|.+.|.+++++|||.++.+. +..++|++.+++++++|+++|++|+..+++|||+..
T Consensus 86 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~------ 158 (490)
T PRK14536 86 VKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT------ 158 (490)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc------
Confidence 9999999999999999999999999999999996544 333699999999999999999999999999999853
Q ss_pred ccccccCCCCccccCCCCCccccccCCC--CCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCC
Q 006368 157 RLVEGTCPFEGCNYESARGDQCENCGKL--LNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGS 233 (648)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~c~~cg~~--l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~ 233 (648)
|| .||++ .+.+++.. |..++ ... .++++ ++.-
T Consensus 159 ------~~---------------~YG~Ls~~~~~~l~~------g~~v~----------~~~--------~K~np~DFaL 193 (490)
T PRK14536 159 ------FP---------------SYGSLASAAVEDLQA------GARIE----------HDT--------NKRNPHDFVL 193 (490)
T ss_pred ------cc---------------chhhhcCCCHHHhhc------CCcCC----------CCC--------CCCCchhchh
Confidence 22 23321 11111111 11111 000 00111 1111
Q ss_pred CChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEe
Q 006368 234 WSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313 (648)
Q Consensus 234 ~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~G 313 (648)
|.. ..+++...++++.+||.+.|+|- + +++..-.+|.....| ||.+|
T Consensus 194 WK~----------~~~~~~~~~~W~SpWG~GRPGWH-------------I-------ECsaMs~~~lg~~~D---IH~GG 240 (490)
T PRK14536 194 WFT----------RSKFENHALTWDSPWGRGYPGWH-------------I-------ECSAMSMKYLGEQCD---IHIGG 240 (490)
T ss_pred ccc----------ccCCCCCCCcccCCCCCCCCChH-------------H-------HHHHHHHHHcCCcee---EEecc
Confidence 211 11234445678999999999872 2 222222334432233 99999
Q ss_pred ccccchhHhHHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCcc
Q 006368 314 KDNVPFHTVMFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 314 kDi~~fH~i~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~ 392 (648)
+|++|||+..++|+..++ |. +++++++++|||+++|+|||||+||+|++.|+++..++++++||+|++ .++.++++
T Consensus 241 ~DliFPHHeneiAqs~a~~g~--~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~ 317 (490)
T PRK14536 241 VDHIRVHHTNEIAQCEAATGK--PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLA 317 (490)
T ss_pred ccCCCcchhhHHHHHHHhcCC--CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCC
Confidence 999999999999999885 43 456778888999999999999999999999999844999999999997 78899999
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQG 471 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~a 471 (648)
||++.|.++. ...++|.|++.++....... ..+................+...+..+.+.+.+|| |+|+++.|
T Consensus 318 Fs~e~l~~a~--~~~~rl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~A 391 (490)
T PRK14536 318 FSWEALKTAK--AARRSLVRRVARVVDAARAT----TGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKA 391 (490)
T ss_pred CCHHHHHHHH--HHHHHHHHHHHHHHHhhhcc----cccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHH
Confidence 9999999884 34566666666654322110 00000000000000000011223455678899999 89999999
Q ss_pred HHHHHHHHHHHHH
Q 006368 472 LKTAMSISSEGNA 484 (648)
Q Consensus 472 l~~i~~l~~~~N~ 484 (648)
+..|+++++.+|.
T Consensus 392 l~~l~~~~~~~n~ 404 (490)
T PRK14536 392 LSELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998885
No 46
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.9e-53 Score=463.35 Aligned_cols=376 Identities=14% Similarity=0.105 Sum_probs=284.5
Q ss_pred CCCCCCCCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIPG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-++|+|++|.|..+ +-++||| .|||||.+||||+|+ ||.+|+++||+|..||+|.||+|+||||+||+.+|+++|+
T Consensus 65 Tltr~ke~f~P~~~~~v~~Y~C--GpTvYd~~HIGhaR~-~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~ 141 (557)
T PLN02946 65 TMSRKKELFKPKVEGKVGMYVC--GVTAYDLSHIGHARV-YVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGE 141 (557)
T ss_pred CCCCCeeccccCCCCceeEEEe--CCccCCCCccccchh-hHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCC
Confidence 46899999999754 3455644 689999999999998 7899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
+|++++++|.+.|.++++.|||. +.+++|+.++|++.+++++++|+++|++|++.+++|||++.-.-|
T Consensus 142 ~~~ela~~y~~~f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~Y----------- 209 (557)
T PLN02946 142 DPISLSRRYCEEFLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEY----------- 209 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhh-----------
Confidence 99999999999999999999998 667778778999999999999999999999999999998753322
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (648)
|... ++ +..++. .|..++..+ -+++| ++.-|...
T Consensus 210 ---------G~Ls---~~--~l~~l~------~g~rv~~~~------------------~K~np~DFaLWK~~------- 244 (557)
T PLN02946 210 ---------GKLS---GR--KLEDNR------AGERVAVDS------------------RKKNPADFALWKAA------- 244 (557)
T ss_pred ---------hhcC---CC--ChhHhh------cCCCCCccc------------------ccCCccccceeccC-------
Confidence 2110 00 001111 122221100 01111 12224321
Q ss_pred HHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 245 ~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
++|..-| +.+||...|+|- .+++..-.+|...+.| ||.+|.|++|+|+-..
T Consensus 245 --k~ge~~W----~SPWG~GRPGWH--------------------IECSaMs~~~lG~~~D---IH~GG~DL~FPHHENE 295 (557)
T PLN02946 245 --KEGEPFW----DSPWGPGRPGWH--------------------IECSAMSAAYLGHSFD---IHGGGMDLVFPHHENE 295 (557)
T ss_pred --CCCCCCc----cCCCCCCCCcHH--------------------HHHHHHHHHHcCCCee---EeccccccCCCcccch
Confidence 1233334 779999999883 2222223344433344 8999999999999988
Q ss_pred HHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 325 PSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 325 pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
-|+..++ |.. +-+++++||||+++|+|||||+||+|++.|+++ .|++|++||||++ ..+.++++||++.+.++
T Consensus 296 iAQsea~~g~~--~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~-~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a-- 369 (557)
T PLN02946 296 IAQSCAACCDS--NISYWIHNGFVTVDSEKMSKSLGNFFTIRQVID-LYHPLALRLFLLG-THYRSPINYSDVQLESA-- 369 (557)
T ss_pred HHHHHHHhCCC--CCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHH-hcCccceeeeeec-cCCCCCcEecHHHHHHH--
Confidence 8888764 433 336777789999999999999999999999998 7999999999997 67889999999999887
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~~ 482 (648)
.....++.+++.|+...+.+. ... .... . ....+...+..+.+.+.+|| |+|+++.|+..|+++++.+
T Consensus 370 ~~~l~~l~~~~~~~~~~l~~~----~~~-~~~~--~----~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~ 438 (557)
T PLN02946 370 SERIFYIYQTLHDCEESLQQH----DST-FEKD--S----VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTI 438 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhh----ccc-cccc--c----cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 455678889999987665431 100 0000 0 01112334556778999999 8999999999999999999
Q ss_pred HHHHHh
Q 006368 483 NAYLQE 488 (648)
Q Consensus 483 N~yi~~ 488 (648)
|.+++.
T Consensus 439 N~~~~~ 444 (557)
T PLN02946 439 NDLLHT 444 (557)
T ss_pred HHHhhh
Confidence 999965
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.3e-52 Score=452.90 Aligned_cols=364 Identities=18% Similarity=0.201 Sum_probs=277.2
Q ss_pred CCCCCCCCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIPG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-+||++++|.|..+ +.++|||. |||||.+||||+|+ ||.+|+++||+|++||+|.|++|+||||+||+.+|+++|+
T Consensus 8 tl~~~~~~f~p~~~~~v~~yvcg--Ptvy~~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~ 84 (463)
T PRK00260 8 TLTRQKEEFKPLEPGKVKMYVCG--PTVYDYAHIGHARS-FVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGE 84 (463)
T ss_pred CCCCceeecccCCCCcceEEEeC--CccCCCcccccchh-HHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCC
Confidence 36899999999754 45677665 66889999999998 7889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCc-ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i-~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (648)
+|+++++++.+.|++++++||| .+|.|.|+| .|.+.+++++++|.++|++|+++++++||++.-.-|.
T Consensus 85 ~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg--------- 153 (463)
T PRK00260 85 SIKELTERYIAAFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYG--------- 153 (463)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccc---------
Confidence 9999999999999999999999 568888888 6999999999999999999999999999987543222
Q ss_pred CCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHH
Q 006368 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (648)
Q Consensus 165 ~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (648)
+ |+..++.+. ..|..++. .. .+.++ ++.-|...
T Consensus 154 ------------------~-ls~~~~~~~---~~~~~~~~----------~~--------~K~~~~DF~Lwk~~------ 187 (463)
T PRK00260 154 ------------------K-LSGRNLDEL---QAGARVEV----------AE--------EKRDPLDFALWKAA------ 187 (463)
T ss_pred ------------------c-CCCCCHHHH---hccCcCCc----------cc--------CCCCccccceecCC------
Confidence 1 111110000 00111110 00 01111 12223321
Q ss_pred HHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
+.|..-| +.+||...|+|. .+|+..-.++...|.| ||.+|+|++|+|+..
T Consensus 188 ---~~~~~~w----~s~~g~grpgWh--------------------iecsam~~~~lg~~~D---ih~gG~DlifpHh~n 237 (463)
T PRK00260 188 ---KPGEPSW----ESPWGKGRPGWH--------------------IECSAMSTKYLGETFD---IHGGGADLIFPHHEN 237 (463)
T ss_pred ---CCCCCCC----CCCCCCCCCChh--------------------HHHHHHHHHhcCCCcc---eecCccccCCCchHh
Confidence 1122233 568999999883 1222222223333455 899999999999988
Q ss_pred HHHHhhh-cCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 324 FPSTLLG-TGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 324 ~pa~l~a-~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.-|+-.+ .|. ++++.++++|||+++|+|||||+||+|++.|+++ .|++|++|||+++ +++.++++|+++.+.++
T Consensus 238 eiaqs~a~~g~--p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~-~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a- 312 (463)
T PRK00260 238 EIAQSEAATGK--PFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-KYDPEVLRFFLLS-AHYRSPLNFSEEALEQA- 312 (463)
T ss_pred HHHHHHHhcCC--CcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-HcCchHhHHHHHh-CCCCCCCccCHHHHHHH-
Confidence 8777555 342 3445555559999999999999999999999998 7999999999997 67789999999998887
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSE 481 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~ 481 (648)
....+++.|+++++.. . ..+.++...+..+.+.+.++| |+|+++.|+..|+++++.
T Consensus 313 -~~~~~rl~~~~~~~~~---~-------------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~ 369 (463)
T PRK00260 313 -KKALERLYNALAETAL---G-------------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELARE 369 (463)
T ss_pred -HHHHHHHHHHHHHhhh---c-------------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3557788887777631 0 112356677788889999999 699999999999999999
Q ss_pred HHHHHHh
Q 006368 482 GNAYLQE 488 (648)
Q Consensus 482 ~N~yi~~ 488 (648)
.|+|++.
T Consensus 370 ~n~~~~~ 376 (463)
T PRK00260 370 INRALET 376 (463)
T ss_pred HHHHhhc
Confidence 9999866
No 48
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-52 Score=441.25 Aligned_cols=459 Identities=20% Similarity=0.270 Sum_probs=359.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.++++ ||.+.+|||+|.+||||.|. |..+|+++||.||+||+|+..||||.+|+|-+.+|.+.|++|+.+...+.+.+
T Consensus 55 ~sk~K-YiLsMFPYPSG~LHiGHvRV-YTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 55 KSKKK-YILSMFPYPSGALHIGHVRV-YTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred cCCCc-eEEEecCCCCCcccccceEE-EEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 34555 99999999999999999998 66699999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 99 ~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
++++++||++|| .-+.|.+|+|.+..|++|.+|+++|++|+.+..+.|||.+.+.|+..+|.
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD---------------- 196 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVD---------------- 196 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhc----------------
Confidence 999999999986 67889999999999999999999999999999999999999999976652
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH-----------
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW----------- 245 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------- 245 (648)
.++++||+|.+|+.+.-.|||++.++|.++|++-++..+ .||. ++++..+|
T Consensus 197 --------------~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~---~W~~-vk~mQrnWIG~~~G~el~F 258 (876)
T KOG0435|consen 197 --------------ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLP---EWPE-VKDMQRNWIGRCDGAELMF 258 (876)
T ss_pred --------------ccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhh---hhhh-HHHHHHhhcccccceEEEE
Confidence 234689999999999999999999999999999998654 6887 88888888
Q ss_pred --------------------------------------------------------------------------------
Q 006368 246 -------------------------------------------------------------------------------- 245 (648)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (648)
T Consensus 259 ~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v 338 (876)
T KOG0435|consen 259 PLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYV 338 (876)
T ss_pred EeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechh
Confidence
Q ss_pred ----------------------------------------------------------------------------Hhcc
Q 006368 246 ----------------------------------------------------------------------------LKEG 249 (648)
Q Consensus 246 ----------------------------------------------------------------------------l~~g 249 (648)
+...
T Consensus 339 ~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~k 418 (876)
T KOG0435|consen 339 LDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYK 418 (876)
T ss_pred ccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecch
Confidence 0123
Q ss_pred cccceeeeccCCCcccCCcC--------------------------------------------------CCCceeeeee
Q 006368 250 LKVRCITRDLKWGVPVPLER--------------------------------------------------FKEKVFYVWF 279 (648)
Q Consensus 250 l~d~~IsR~~~WGi~vP~~~--------------------------------------------------~~~~v~yVWf 279 (648)
|+||-||||+.||.|||.-- .+..|+++|+
T Consensus 419 LkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFv 498 (876)
T KOG0435|consen 419 LKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFV 498 (876)
T ss_pred hhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhh
Confidence 77999999999999999610 1568999999
Q ss_pred cccchHHHhcc-c-----cchHHHhhcCCCCCcceEEEEeccccchhH---hHHHHHhhhcCCCc--ccCceEEeece--
Q 006368 280 DAPIGYVSITS-C-----YTNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLLGTGENW--TLMKTISVTEY-- 346 (648)
Q Consensus 280 Da~~~yis~~~-~-----~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~---i~~pa~l~a~g~~~--~~p~~~~~hg~-- 346 (648)
|+.+-|+-.+- . +...-+.+|- |.| ++++|+++.-.|. -+|.-+|...|.-- .|++.++..|.
T Consensus 499 DSsWYYlRylDpkN~e~~~d~a~a~k~M-PVD---vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~ 574 (876)
T KOG0435|consen 499 DSSWYYLRYLDPKNPEEPFDKAKAKKNM-PVD---VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVR 574 (876)
T ss_pred ccceeeEeecCCCCcccccchhhhhccC-cee---EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhccc
Confidence 99999875431 1 1123455665 677 8999999987773 45666777666410 11121211111
Q ss_pred ----------------------------ee--------cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCC
Q 006368 347 ----------------------------LN--------YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (648)
Q Consensus 347 ----------------------------l~--------~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d 390 (648)
+. +-=+|||||++|+|+|.+.++ .||+|.+|+|++..+|..++
T Consensus 575 G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~-~yG~D~tRl~ilf~ap~~~~ 653 (876)
T KOG0435|consen 575 GKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL-EYGVDTTRLYILFAAPPRDP 653 (876)
T ss_pred ceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-HhCchHHHHHHHhhCCcccc
Confidence 11 112599999999999999998 79999999999999999999
Q ss_pred ccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHH
Q 006368 391 TLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLK 469 (648)
Q Consensus 391 ~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~ 469 (648)
++++.+.+... ..+...++++++++...-.. +..-+.+.+. .......+.+.+..+..+.++.+++ ..+.++
T Consensus 654 ~nW~es~i~Gi--~rwl~riw~l~~~~~~ar~~--g~~~d~~~~t---d~~dae~~kl~~~~n~fi~~vt~~~e~~~slN 726 (876)
T KOG0435|consen 654 INWNESAIPGI--KRWLQRIWALVSQILQARDD--GKAKDLKKLT---DGFDAETRKLKETYNFFIKQVTEHYEVLFSLN 726 (876)
T ss_pred cccccccchhH--HHHHHHHHHHHHHHHHHHhc--CCcccccccc---cccchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999988876 46777777777776654211 0011111111 1123345688999999999999999 467799
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 470 QGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 470 ~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
.|+..+|.|.+..-+-..... .. ++ . ....+..+.++|+|++|+.|+++|..|+..
T Consensus 727 taIS~~m~ltN~l~~a~k~~~----~h-~~-~-------~~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 727 TAISDMMGLTNALKKALKIVL----VH-SP-E-------FERALEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHHHHHHHHhhhhhh----hc-Ch-H-------HHHHHHHHHHHHhccCchhHHHHHHHHhcc
Confidence 999999998875433222211 10 11 1 113566788999999999999999999943
No 49
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-52 Score=447.42 Aligned_cols=377 Identities=18% Similarity=0.173 Sum_probs=277.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc----------chHH
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY----------GTAT 76 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~----------G~ki 76 (648)
-+||+|++|.|. ++-++| ++.||||+.+||||+|+ +|.+|+++||+|.+||+|.||+|++|+ |+||
T Consensus 8 Tltr~ke~f~p~-~~v~mY--~CGpTVYd~~HiGh~r~-~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKI 83 (481)
T PRK14534 8 TKTKDLSELKNF-SDVKVY--ACGPTVYNYAHIGNFRT-YIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKV 83 (481)
T ss_pred cCCCCeeecccC-CceEEE--eCCCCCCCCCCccchhH-HHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHH
Confidence 478999999997 444445 66689999999999997 789999999999999999997777777 9999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccc
Q 006368 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 77 ~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
+.+|+++|++|++++++|.+.|.++++.|||.++.|++| .++|++.+++++++|.++|++|+..+++|||+.+-
T Consensus 84 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~----- 157 (481)
T PRK14534 84 VKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF----- 157 (481)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc-----
Confidence 999999999999999999999999999999999998886 47999999999999999999999999999999862
Q ss_pred ccccccCCCCccccCCCCCccccccCCCCCccccCC-CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCC
Q 006368 157 RLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSW 234 (648)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~ 234 (648)
|+|....| .++.+ +.|. |..+. +.. .++++ ++.-|
T Consensus 158 -----------~~YG~ls~------------~~l~~l~~~~--~~~v~----------~~~--------~K~np~DFaLW 194 (481)
T PRK14534 158 -----------KSYGQMAG------------INLNDFKDMS--VSRVE----------IDK--------SKRNKSDFVLW 194 (481)
T ss_pred -----------cchhhhcC------------CCHHHHhhhc--cCcCC----------ccc--------CCCCcccchhc
Confidence 22211111 11111 1111 11111 100 01111 11112
Q ss_pred ChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccch-HHHhhcCCCCCcceEEEEe
Q 006368 235 SQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-EWEQWWKNPENVELYQFMG 313 (648)
Q Consensus 235 ~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~-~~~~~w~~p~~~~~i~~~G 313 (648)
. ...++++..++++.+||...|+|- .+++. ..+.+|. ..| ||.+|
T Consensus 195 K----------~~~~~~~~~~~w~spWG~GrPgWH--------------------iECsam~~~~lg~-~~D---IH~GG 240 (481)
T PRK14534 195 F----------TNSKFKDQEMKWDSPWGFGYPSWH--------------------LECAAMNLEYFKS-TLD---IHLGG 240 (481)
T ss_pred C----------cCCcCCCCCCeecCCCCCcCCcHH--------------------HHHHHHHHHHcCC-cce---EEecc
Confidence 1 123456667889999999999883 22322 2333443 234 89999
Q ss_pred ccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccc
Q 006368 314 KDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (648)
Q Consensus 314 kDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~f 393 (648)
+|++|||+..++|+.+++. ..+++++++++|||+++|+|||||+||+|++.|+++..++++++|||+++ .++.++++|
T Consensus 241 ~DliFPHHene~Aqs~a~~-g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~F 318 (481)
T PRK14534 241 VDHIGVHHINEIAIAECYL-NKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKF 318 (481)
T ss_pred cccCCCcchhHHHHHhhhc-CCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCC
Confidence 9999999999999998853 23567888888999999999999999999999999845999999999996 788899999
Q ss_pred cHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Q 006368 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGL 472 (648)
Q Consensus 394 s~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al 472 (648)
|++.+.++. ...+++.+.+.++...+.. .++..... ..... .......+.+.+.+|| |+|+++.|+
T Consensus 319 s~e~l~~a~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~---~~~~~~~~~~~f~~Al~DDlNtp~Al 385 (481)
T PRK14534 319 TFNNLKACK--IARENMLNKLTYFYSSLDQ-----FDLNLLNK---DLENI---EFSLEKEYYDSFLEKIAFDLNIPQGL 385 (481)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHhhhh-----cccccccc---ccccc---hhhhHHHHHHHHHHHHhhcCChHHHH
Confidence 999999873 3445555555544333321 00000000 00000 0011223456889999 899999999
Q ss_pred HHHHHHHHHHHHH
Q 006368 473 KTAMSISSEGNAY 485 (648)
Q Consensus 473 ~~i~~l~~~~N~y 485 (648)
..|+++++..|..
T Consensus 386 ~~l~~~~k~~n~~ 398 (481)
T PRK14534 386 ALLWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998863
No 50
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=7.8e-52 Score=451.35 Aligned_cols=362 Identities=17% Similarity=0.183 Sum_probs=274.3
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-+||+|++|.|.. ++.++|+|. |||||.+||||+|+ ||.+|+++||+|++||+|.|++|+||||+||+.+|+++|+
T Consensus 6 tlt~~~e~f~p~~~~~v~~yvcg--ptvy~~~HiGhar~-~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~ 82 (465)
T TIGR00435 6 TLTRQKEEFEPLVQGKVKMYVCG--PTVYDYCHIGHART-AIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGE 82 (465)
T ss_pred CCCCCeeccccCCCCcceEEEec--CccCCCcccccchH-HHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCC
Confidence 4789999999975 445667665 58999999999998 7899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccccc-cCCCchHHHHHHHHHHHHHHHCCCEEEce-EeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISFDNF-GRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~D~f-~rT~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+|+++++++.+.|.+++++|||++|.| .|+| .|...+++++++|.++|++|+.. +.+|||+.|...|.
T Consensus 83 ~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG-------- 152 (465)
T TIGR00435 83 SVYEVSERFIEAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYG-------- 152 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhc--------
Confidence 999999999999999999999999885 5666 89999999999999999999998 99999998754322
Q ss_pred CCCccccCCCCCccccccCCCC--CccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLL--NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQ 240 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l--~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 240 (648)
++- +..++.. |..++. .. .+++| ++.-|...
T Consensus 153 -------------------~ls~~~~~~~~~------~~~~~~----------~~--------~K~~p~DF~Lwk~~--- 186 (465)
T TIGR00435 153 -------------------KLSKQDLDQLEA------GARVDV----------DE--------AKRNKLDFVLWKSS--- 186 (465)
T ss_pred -------------------cCCCCCHHHHhc------ccccCc----------cc--------ccCCCCCceeeCCC---
Confidence 110 0001100 111110 00 01122 12223211
Q ss_pred HHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchh
Q 006368 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (648)
Q Consensus 241 ~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH 320 (648)
++|...| +.+||...|+|- .+|+..-.++...+.| ||.+|.|++++|
T Consensus 187 ------~~~~~~w----~spwG~grpgWh--------------------iecsam~~~~lg~~~D---ih~gG~Dl~fpH 233 (465)
T TIGR00435 187 ------KEGEPKW----DSPWGKGRPGWH--------------------IECSAMNDKYLGDQID---IHGGGVDLIFPH 233 (465)
T ss_pred ------CCCCCCC----cCCCCCCCCCcH--------------------hHHHHHHHHhcCCCce---eeccccccccch
Confidence 1222233 678999999883 1232222223333445 899999999999
Q ss_pred HhHHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHH
Q 006368 321 TVMFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (648)
Q Consensus 321 ~i~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~ 399 (648)
..+..|+..++ |. +++++++++|||+++|+|||||+||+|++.|+++ .|++|++|||+++ .++.++++||++.+.
T Consensus 234 hene~aqs~a~~g~--~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~-~~~~dalR~~ll~-~~~~~~l~fs~~~l~ 309 (465)
T TIGR00435 234 HENEIAQSEAAFGK--QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK-NYDPEILRYFLLS-VHYRSPLDFSEELLE 309 (465)
T ss_pred HHHHHHHHHHhcCC--CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-HCCHHHHHHHHHh-CCCCCCCccCHHHHH
Confidence 99999988774 43 4567777779999999999999999999999999 7999999999997 567899999999999
Q ss_pred HHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Q 006368 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSI 478 (648)
Q Consensus 400 ~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l 478 (648)
++ ....++|.|+++++...... .. ..+ .. +......+.+.+.+|| |+|+++.|+..|+++
T Consensus 310 ~a--~~~~~rl~~~~~~~~~~~~~----~~--~~~----~~-------~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~ 370 (465)
T TIGR00435 310 AA--KNALERLYKALRVLDTTLAY----SG--NQS----LN-------KFPDEKEFEARFVEAMDDDLNTANALAVLFEL 370 (465)
T ss_pred HH--HHHHHHHHHHHHHHHhhhcc----cc--ccc----cc-------cchhHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 88 45688899998887543221 00 000 00 0111234557788899 899999999999999
Q ss_pred HHHHH
Q 006368 479 SSEGN 483 (648)
Q Consensus 479 ~~~~N 483 (648)
++.+|
T Consensus 371 ~~~~n 375 (465)
T TIGR00435 371 AKSIN 375 (465)
T ss_pred HHHhh
Confidence 99999
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=3.1e-52 Score=439.24 Aligned_cols=357 Identities=14% Similarity=0.112 Sum_probs=262.0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
-++|+|++|.| .++-++|||+|.|| +.+||||+|+ ||.+|+++||+|++||+|.||+|+||||+||+.+|+++|++
T Consensus 23 tlt~~~~~f~p-~~~v~~YvCGpTvY--~~~HIGhart-~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t 98 (411)
T TIGR03447 23 TADGQVRPVEP-GPEAGMYVCGITPY--DATHLGHAAT-YLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVD 98 (411)
T ss_pred CCCCCeeeccC-CCcceEEEeCCccC--CCcccccchH-HHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCC
Confidence 47899999999 77778888886655 9999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcc-cccccCCCchHHHHHHHHHHHHHHHCCCEEEceE----eeeeccCcCcccccccccc
Q 006368 87 PKEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEG 161 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~-~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g 161 (648)
|++++++|++.|.++++.|||. +|.|+||| +|.+.+++++++|.++|+||+..+ ++||+++.-.-|
T Consensus 99 ~~ela~~y~~~f~~d~~~Lni~~~d~~~RaT--e~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~Y------- 169 (411)
T TIGR03447 99 WRELGTSQIDLFREDMEALRVLPPRDYIGAV--ESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQF------- 169 (411)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCCC--CCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhcc-------
Confidence 9999999999999999999986 89999999 558999999999999999999886 799987753221
Q ss_pred cCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHH
Q 006368 162 TCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQ 240 (648)
Q Consensus 162 ~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~ 240 (648)
|... +. +.+++....- +..++.. +.-++++ ++.-|...
T Consensus 170 -------------G~Ls---~~--~~~~~~~~~~---~~~~~~~-----------------~~~K~~p~DFaLWK~~--- 208 (411)
T TIGR03447 170 -------------GYES---GY--DRATMLELFA---ERGGDPD-----------------RPGKRDPLDALLWRAA--- 208 (411)
T ss_pred -------------cccc---CC--CHHHHHhhhc---ccccCcc-----------------cccCCCCcccceeCCC---
Confidence 1100 00 0000000000 0000000 0001111 12223321
Q ss_pred HHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchh
Q 006368 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (648)
Q Consensus 241 ~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH 320 (648)
+.|..-| +.+||...|+|- .+++..-.++...+.| ||..|.|++|+|
T Consensus 209 ------~~~e~~w----~spwG~GRPGWH--------------------iECsam~~~~lg~~~D---ih~GG~DLifpH 255 (411)
T TIGR03447 209 ------REGEPSW----DSPFGPGRPGWH--------------------IECSAIATNRLGAGFD---IQGGGSDLIFPH 255 (411)
T ss_pred ------CCCCCCc----cCCCCCCCChhH--------------------HHHHHHHHHHcCCcee---cccCcccccccc
Confidence 1122233 778999999883 1222222334433344 899999999999
Q ss_pred HhHHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHH
Q 006368 321 TVMFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (648)
Q Consensus 321 ~i~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~ 399 (648)
+.+.-|+-.++ |. -++++.+++.|||+++|+|||||+||+|++.++++.++++|++|||+++ +++.++++||++.+.
T Consensus 256 heneiaq~~A~~g~-~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~ 333 (411)
T TIGR03447 256 HEFSAAHAEAATGV-RRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLA 333 (411)
T ss_pred hHhHHHHHHHhcCC-CCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHH
Confidence 99988887774 33 1344666666999999999999999999999998745899999999995 788899999999998
Q ss_pred HHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Q 006368 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSI 478 (648)
Q Consensus 400 ~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l 478 (648)
++ ....+++.+++.++. . . .+..+...+.++| |+|+++.|+..|+++
T Consensus 334 ~a--~~~l~rl~~~~~~~~----~---------------~-----------~~~~~~~~~~~al~dDln~p~a~~~l~~~ 381 (411)
T TIGR03447 334 EA--EARLARWRAALAATD----A---------------P-----------DATDLIARLRQHLANDLDTPAALAAVDNW 381 (411)
T ss_pred HH--HHHHHHHHHHHhhcc----c---------------c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 86 344445555443210 0 0 1122345677889 899999999999999
Q ss_pred HHHHHH
Q 006368 479 SSEGNA 484 (648)
Q Consensus 479 ~~~~N~ 484 (648)
++..|.
T Consensus 382 ~~~~n~ 387 (411)
T TIGR03447 382 AAAALS 387 (411)
T ss_pred HHHHHh
Confidence 988775
No 52
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-51 Score=429.22 Aligned_cols=350 Identities=12% Similarity=0.077 Sum_probs=254.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+-++|||. |||||++||||+|+ ||.+|+++||+|++||+|.||+|+||||+||+.+|+++|++|+++|+++++.|.+
T Consensus 9 ~v~~YvCG--pTvY~~~HIGh~r~-~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 9 TATMYVCG--ITPYDATHLGHAAT-YLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred eeEEEecC--CCCCCCCccchhHH-HHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34566655 56669999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCc-ccccccCCCchHHHHHHHHHHHHHHHCCCEEEceE----eeeeccCcCcccccccccccCCCCccccCCCCC
Q 006368 101 VYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEGTCPFEGCNYESARG 175 (648)
Q Consensus 101 ~~~~l~i-~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g 175 (648)
+++.||| ++|.|.|||+ |.+.+++++++|.++|++|+..+ ++||+++.-.- ||
T Consensus 86 d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~--------------------YG 143 (384)
T PRK12418 86 DMEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQ--------------------FG 143 (384)
T ss_pred HHHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhh--------------------cc
Confidence 9999997 8899999995 69999999999999999999998 89998875322 12
Q ss_pred ccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHHHHHhcccccce
Q 006368 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAWLKEGLKVRC 254 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (648)
..- +. +.+++....- +..++.. ..-++++ ++.-|... ++|..-|
T Consensus 144 ~ls---~~--~~~~~~~~~~---~~~~~~~-----------------~~~K~~p~DFaLWK~~---------~~~~~~w- 188 (384)
T PRK12418 144 YES---GY--DRATMLELFA---ERGGDPD-----------------RPGKRDPLDALLWRAA---------RPGEPSW- 188 (384)
T ss_pred ccc---CC--CHHHHHhhhc---ccccCcc-----------------cccCCCcccceeeccC---------CCCCCcc-
Confidence 100 00 0000000000 0000000 0001111 12223321 1122233
Q ss_pred eeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCC
Q 006368 255 ITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (648)
Q Consensus 255 IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~ 334 (648)
+.+||...|+|- .+++..-.++...+.| ||.+|.|++|+|+.+..|+..++.-.
T Consensus 189 ---~spwG~GRPGWH--------------------iECsam~~~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~~g~ 242 (384)
T PRK12418 189 ---PSPFGPGRPGWH--------------------IECSAIALNRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAATGE 242 (384)
T ss_pred ---cCCCCCCCChhH--------------------HHHHHHHHHHcCCCcc---cccCccccccchhHhHHHHHHHhcCC
Confidence 779999999883 1222223344444455 89999999999999999988774322
Q ss_pred cccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 335 ~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
-++++.+++.|+|.++|+|||||+||+|+|.++++.+++++++|||++ .+++.++++||++.+.++. ....++.|++
T Consensus 243 ~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~--~~l~r~~~~~ 319 (384)
T PRK12418 243 RRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAE--ARLARWRAAA 319 (384)
T ss_pred CCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHH--HHHHHHHHHH
Confidence 123344444489999999999999999999999864477779999999 4788899999999998873 3344455544
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
.+. . . . .+..+.+.+.++| |+|+++.|+..|+++++.+|.|+...
T Consensus 320 ~~~-----~------------~--~-----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 320 ALP-----A------------G--P-----------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDD 365 (384)
T ss_pred hcc-----c------------c--c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 321 0 0 0 1123457889999 89999999999999999999999664
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.4e-51 Score=443.54 Aligned_cols=363 Identities=17% Similarity=0.173 Sum_probs=271.0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
-++|+|++|.|..++ ++-+.++.||||+.+||||+|+ +|.+|+++||+|+.||+|.||+|+||||+||+.+|+++|++
T Consensus 233 Tltr~ke~f~P~~~~-~V~mYvCGPTVYd~~HIGHaRt-~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~s 310 (699)
T PRK14535 233 TLTRQKEPFAPIDPE-NVRMYVCGMTVYDYCHLGHARV-MVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGET 310 (699)
T ss_pred CCCCCeeccccCCCC-ceEEEecCCcCCCCCcccchhH-HHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCC
Confidence 368999999997643 4455566789999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEce-EeeeeccCcCcccccccccccCCC
Q 006368 87 PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
|.+++++|.+.|.++++.|||.++.| +|+..+|+..+++++++|.++|++|+.. +++|||+++-.-
T Consensus 311 p~ela~~y~~~F~~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~------------ 377 (699)
T PRK14535 311 IGELTARFIQAMHEDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA------------ 377 (699)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc------------
Confidence 99999999999999999999999877 5656799999999999999999999874 589999985322
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (648)
||... |. +..++. .|..++.. . .+.++ ++.-|...
T Consensus 378 --------YG~LS---~~--~~~~l~------~g~rve~d----------~--------~Krnp~DFaLWK~s------- 413 (699)
T PRK14535 378 --------YGQLS---GK--SLDDLR------AGERVEVD----------G--------FKRDPLDFVLWKAA------- 413 (699)
T ss_pred --------ccccc---CC--ChHHhc------CCCccccc----------c--------ccCCccccceeccC-------
Confidence 22110 00 011111 12222210 0 01122 22234321
Q ss_pred HHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 245 ~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
++|.+-| +.+||...|+|- .+++..-.++...+.| ||.+|.|++|+|+..-
T Consensus 414 --k~Gep~W----~SPWG~GRPGWH--------------------IECSAMs~~~LG~~~D---IHgGG~DLiFPHHENE 464 (699)
T PRK14535 414 --KAGEPAW----ESPWGNGRPGWH--------------------IECSAMSENLFGDTFD---IHGGGADLQFPHHENE 464 (699)
T ss_pred --CCCCCCc----cCCCCCCCCchH--------------------HHHHHHHHHHcCCcce---eECCccccCCCCCccH
Confidence 1233334 779999999883 2333333344443344 8999999999998888
Q ss_pred HHHhhhc-CCC-------------c-ccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCC
Q 006368 325 PSTLLGT-GEN-------------W-TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (648)
Q Consensus 325 pa~l~a~-g~~-------------~-~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~ 389 (648)
-|+..|+ |.+ . ++-++++++|||+++|+|||||+||+|++.++++ .|++|++|||+++ +++.+
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe-~ygpdalRl~lLs-shYRs 542 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLK-QYDPEVVRFFILR-AHYRS 542 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHH-hCCHHHHHHHHHc-CCCCC
Confidence 8887663 321 0 1235777779999999999999999999999998 7999999999997 67889
Q ss_pred CccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccH
Q 006368 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKL 468 (648)
Q Consensus 390 d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~ 468 (648)
+++||++.+.++ ....+++.+++.++.. . . + .+...+..+.+.+.+|| |+|++
T Consensus 543 pL~fS~e~Le~A--k~~l~Rl~~~l~~~~~---~------~---~------------~~~~~l~~~~~~f~~AL~DDlnt 596 (699)
T PRK14535 543 PLNYSDAHLDDA--KGALTRLYTTLKNTPA---A------E---F------------MLSENVNDYTRRFYAAMNDDFGT 596 (699)
T ss_pred CCCcCHHHHHHH--HHHHHHHHHHHHhhhh---c------c---c------------hhhhhHHHHHHHHHHHHhhccCh
Confidence 999999999887 4445555555544310 0 0 0 01123345667899999 89999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006368 469 KQGLKTAMSISSEGNAY 485 (648)
Q Consensus 469 ~~al~~i~~l~~~~N~y 485 (648)
+.|+..|+++++.+|.+
T Consensus 597 p~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 597 VEAVAVLFELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999976
No 54
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-50 Score=424.10 Aligned_cols=366 Identities=17% Similarity=0.189 Sum_probs=278.4
Q ss_pred CCCCCCCCCCCCCCC-CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIPGK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
.+||.|++|+|..+. -++| .+.||||+.+||||+|+ +|..|+++||++.+||.|.||+|+||+++||+.+|.++|.
T Consensus 7 Tltr~ke~F~P~~~~~V~mY--vCGpTVYd~~HIGhaRt-~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~ 83 (464)
T COG0215 7 TLTRQKEEFVPIDPGKVKMY--VCGPTVYDYAHIGHART-YVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGL 83 (464)
T ss_pred cCccceecccCCCCCeEEEE--ecCCccCCccccccCcc-eehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCC
Confidence 478999999997644 4455 55689999999999998 7889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcc-cccccCCCchHHHHHHHHHHHHHHHCCCEEEc-eEeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~-~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
++.+++++|.+.|.+++++|||. +|.+.|.| +|...+.+++++|.++|++|.. .+.++|+++.-.-|..-
T Consensus 84 ~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~L------ 155 (464)
T COG0215 84 SIREVAERYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKL------ 155 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhh------
Confidence 99999999999999999999995 69999988 9999999999999999999998 68999998764433210
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQAT 242 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 242 (648)
.|+ .+.+++. .|..++..+. +++| ++.-|...
T Consensus 156 -----------------S~~-~~le~l~------~gar~~~~~~------------------Krnp~DFvLWK~s----- 188 (464)
T COG0215 156 -----------------SGR-DSLEELQ------AGARVEVDEE------------------KRNPLDFVLWKAA----- 188 (464)
T ss_pred -----------------cCC-CChhHHh------hccccccccc------------------cCCchhheeeccC-----
Confidence 000 0000000 0111110000 1111 11123211
Q ss_pred HHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHh
Q 006368 243 HAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTV 322 (648)
Q Consensus 243 ~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i 322 (648)
+.|.+.| +++||...|+|- .+++..-..+..+..| ||.+|.|++|+|+.
T Consensus 189 ----k~gEp~W----~SPWG~GRPGWH--------------------IECSaM~~~~LG~~~D---IHgGG~DLiFPHHE 237 (464)
T COG0215 189 ----KPGEPSW----DSPWGKGRPGWH--------------------IECSAMSTKYLGETFD---IHGGGSDLIFPHHE 237 (464)
T ss_pred ----CCCCCCC----CCCCCCCCCchh--------------------HHHHHHHHHHhCCCcc---eecCcccccCCCcc
Confidence 2345555 889999999983 1222222333333344 89999999999999
Q ss_pred HHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 323 MFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 323 ~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.--|+-.++.-..++-++++++|||+++|+|||||+||||++.|+++ .|++++|||+|++ +.+.++++||++.+.++
T Consensus 238 NEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~-~~~p~~lR~~lls-~HYR~pl~fsee~L~~A- 314 (464)
T COG0215 238 NEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK-KYDPEVLRLFLLS-SHYRSPLDFSEELLEEA- 314 (464)
T ss_pred cHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-hcCHHHHHHHHHH-HHhCCccccCHHHHHHH-
Confidence 98898887654223447777779999999999999999999999998 7999999999997 78899999999999998
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSE 481 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~ 481 (648)
.....+|.|++.++...... . ... .+.+...++.++| |+|+++.|+..+.++++.
T Consensus 315 -~~~l~rl~~~~~~~~~~~~~------------~---~~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~ 370 (464)
T COG0215 315 -KKALERLYNALRRLRDLAGD------------A---ELA--------DLKEFEARFREALDDDFNTPKALAVLFELAKE 370 (464)
T ss_pred -HHHHHHHHHHHHHHHhhccc------------c---ccc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 55678888888876532221 0 000 3344556688999 899999999999999999
Q ss_pred HHHHHHh
Q 006368 482 GNAYLQE 488 (648)
Q Consensus 482 ~N~yi~~ 488 (648)
.|..++.
T Consensus 371 ~~~~~~~ 377 (464)
T COG0215 371 INRLLEE 377 (464)
T ss_pred Hhhhhhc
Confidence 8776654
No 55
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-49 Score=416.25 Aligned_cols=499 Identities=21% Similarity=0.312 Sum_probs=374.4
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CC-----------
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~----------- 85 (648)
.+++++|....+||.+.|.||-||+...+| .|+..||.-+.||.|--..|||+||.|++-...+. |+
T Consensus 34 sk~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI 112 (1070)
T KOG0434|consen 34 SKGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGI 112 (1070)
T ss_pred hCCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhH
Confidence 457778888999999999999999998876 99999999999999999999999999998666442 44
Q ss_pred -----CHHHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccc
Q 006368 86 -----SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (648)
Q Consensus 86 -----~~~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (648)
.++.++-+|+.+.+....+|| |+||+=++|..|.+.+.|.++|++|+++|++|++..-..|+..|.+.|+.-+
T Consensus 113 ~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFE 192 (1070)
T KOG0434|consen 113 DKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFE 192 (1070)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchh
Confidence 367788899999999999999 7788888999999999999999999999999999999999999999997643
Q ss_pred ccc----------------------------cCCC---------------------------------------------
Q 006368 159 VEG----------------------------TCPF--------------------------------------------- 165 (648)
Q Consensus 159 v~g----------------------------~cp~--------------------------------------------- 165 (648)
... |.|+
T Consensus 193 a~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 193 AQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred cccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 210 3332
Q ss_pred -------------CccccC-----------------------------------CCCCc------------------ccc
Q 006368 166 -------------EGCNYE-----------------------------------SARGD------------------QCE 179 (648)
Q Consensus 166 -------------~~c~~~-----------------------------------~~~g~------------------~c~ 179 (648)
.|-.|+ ++.|. .|+
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 000010 01110 010
Q ss_pred --c-----------cCCCC------------------Cccc--cCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHH
Q 006368 180 --N-----------CGKLL------------------NATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (648)
Q Consensus 180 --~-----------cg~~l------------------~~~e--l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (648)
. .|+++ -... ..+|.|||+.+|+.++..++||.+.....++|++-..
T Consensus 353 VDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~ 432 (1070)
T KOG0434|consen 353 VDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM 432 (1070)
T ss_pred cccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhccc
Confidence 0 11111 1111 2479999999999999999999999988888776655
Q ss_pred cCCCCCCCChHHH-HHHHHHHhcccccceeeeccCCCcccCCcCC-----------------------------------
Q 006368 227 NMSVAGSWSQNAI-QATHAWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------- 270 (648)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~----------------------------------- 270 (648)
+..+. |.+++ ++..+||++ -+||.|||.+.||.|+|.|-.
T Consensus 433 ~t~WV---P~~ikeKRF~NWL~n-ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~it 508 (1070)
T KOG0434|consen 433 KTHWV---PQNIKEKRFANWLKN-ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHIT 508 (1070)
T ss_pred ccccC---ChhhhHHHHHHHHhh-hhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCcee
Confidence 54432 44444 467899987 789999999999999998721
Q ss_pred ------------CCceeeeeecccc-hHHHhccccc----hHHHhhcCCCCCcceEEEEecccc--chhHhHHHHHhhhc
Q 006368 271 ------------KEKVFYVWFDAPI-GYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGT 331 (648)
Q Consensus 271 ------------~~~v~yVWfDa~~-~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~--~fH~i~~pa~l~a~ 331 (648)
-..|++.||++.. -|-+. .|| +.|++-+ |+| +-..|-|+. +|.+..--+.++
T Consensus 509 Ips~~gkg~l~Rv~eVfDCWFESGSMPYAq~--HyPFenk~~fe~~f--Pad---FIaEGlDQTRGWFYTL~VlsT~L-- 579 (1070)
T KOG0434|consen 509 IPSKKGKGVLHRVSEVFDCWFESGSMPYAQR--HYPFENKEEFEENF--PAD---FIAEGLDQTRGWFYTLLVLSTAL-- 579 (1070)
T ss_pred cccCCCCcceehhhhHhhhhhccCCCcchhh--cCCccchHHHhhcC--chH---hhhhccccccchhhHHHHHHHHH--
Confidence 0247778998643 23322 333 3455545 445 455788887 465543322222
Q ss_pred CCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC--CCCCccccHHHHHHHhhHHHHH
Q 006368 332 GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP--EVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 332 g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~--~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
...+++++++++|.++ -||+|||||++|.-+|..+++ +||+|+||+||+. +| ....+.|+++.+.+++ +++.-
T Consensus 580 -F~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin-kYGADalRlYLIn-SPVvraE~LkFkeeGVrevv-k~v~l 655 (1070)
T KOG0434|consen 580 -FGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-KYGADALRLYLIN-SPVVRAENLKFKEEGVREVV-KDVLL 655 (1070)
T ss_pred -cCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH-hhcchheeeeeec-CccccccccccchhhHHHHH-Hhhhh
Confidence 2235779999999986 799999999999999999998 8999999999996 54 3678999999999987 45555
Q ss_pred HHhHHHHHHHHhhhC---CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHH
Q 006368 409 NLGNFINRVLSFIAK---PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNA 484 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k---~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~-~N~ 484 (648)
-..|.+.+....... ..+..| .++......+-+|+|+.+..+.++.-+++.|+.|++..++-.++.++.. +|.
T Consensus 656 PW~NsyrF~~qn~~~~~~~~g~~f---~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNw 732 (1070)
T KOG0434|consen 656 PWYNSYRFLVQNAALLKKETGKDF---VFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNW 732 (1070)
T ss_pred hhhHHHHHHHHHHHHhccccCCcc---ccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhh
Confidence 556666665554332 111111 1111112345689999999999999999999999999999999999965 999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
|+.-++--.........+..++.++.++|..+..+|+||.|++++-||+.|..
T Consensus 733 YiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 733 YIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred heehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 99765532111123356778899999999999999999999999999998874
No 56
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=4.1e-44 Score=358.92 Aligned_cols=293 Identities=18% Similarity=0.190 Sum_probs=196.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHH
Q 006368 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY 94 (648)
Q Consensus 15 ~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~ 94 (648)
|.|..++ ++-+.++.||||+.+||||+|+ ||.+|+++||++..||+|.||+|++|+++||+.+|+++|+++.+++++|
T Consensus 1 F~p~~~~-~v~~Y~CGPTVYd~~HiGhaR~-~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y 78 (300)
T PF01406_consen 1 FKPLNPG-KVRMYVCGPTVYDYAHIGHART-YVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRY 78 (300)
T ss_dssp ---SCTT-EEEEEEEEEBTTS--BHHHHHH-HHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHH
T ss_pred CcCCCCC-eEEEEcCCCCCCCCCCCcceee-eeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHH
Confidence 4565332 4444456689999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEce-EeeeeccCcCcccccccccccCCCCccccCC
Q 006368 95 HVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPFEGCNYES 172 (648)
Q Consensus 95 ~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~ 172 (648)
.+.|.+++++|||.. +.+.|.| +|...+.+++++|+++|++|... +.+||+++.-.-
T Consensus 79 ~~~f~~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~------------------- 137 (300)
T PF01406_consen 79 EEEFFEDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPD------------------- 137 (300)
T ss_dssp HHHHHHHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTT-------------------
T ss_pred HHHHHHHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccc-------------------
Confidence 999999999999987 7888888 89999999999999999999999 999999874221
Q ss_pred CCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHH---HHHHcCC-CCCCCChHHHHHHHHHHhc
Q 006368 173 ARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLE---EYINNMS-VAGSWSQNAIQATHAWLKE 248 (648)
Q Consensus 173 ~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~---~~~~~~~-~~~~~~~~~~~~~~~~l~~ 248 (648)
+|. + + +.. ++.....-. +.-+.++ ++.-|... +.
T Consensus 138 -YG~-------L-s------------~~~------------~~~l~~~~~~~~~~~K~~p~DFaLWK~~---------~~ 175 (300)
T PF01406_consen 138 -YGK-------L-S------------NQD------------LEDLEAGARVEVDYEKRNPRDFALWKAA---------KP 175 (300)
T ss_dssp -TTT-------T-T------------T-S------------HHHHHHCHHHTT-TTSSSTT-EEEEEE-----------T
T ss_pred -ccc-------c-c------------ccc------------hhhHHhhhhcccccccCCCcceeeeecc---------cc
Confidence 111 0 0 000 000000000 0001111 11112211 11
Q ss_pred ccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHh
Q 006368 249 GLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTL 328 (648)
Q Consensus 249 gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l 328 (648)
+. ++-+.+||...|+|- .+++..-.++...+.| ||.+|.|++|+|+..--|+.
T Consensus 176 ~e----~~w~spwG~GRPGWH--------------------iECsam~~~~lG~~~D---IH~GG~DL~FPHHENEiAqs 228 (300)
T PF01406_consen 176 GE----PSWDSPWGKGRPGWH--------------------IECSAMSMKYLGDTFD---IHGGGIDLIFPHHENEIAQS 228 (300)
T ss_dssp TS------B--TTSSEEE-HH--------------------HHHHHHHHHHHTTSEE---EEEEEGGGTTTHHHHHHHHH
T ss_pred cC----CcccCCCccCcCcee--------------------eehHHHHHHHcCCCce---EEccccccCCCCccchHHHH
Confidence 22 334678999999872 1222222333333334 89999999999999988888
Q ss_pred hhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHh
Q 006368 329 LGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (648)
Q Consensus 329 ~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~ 402 (648)
.|+.-. ++.+++++.|||+++|+|||||+||+|+++|+++ +|+++++||+|++ +.+.++++||++.+.++-
T Consensus 229 ~a~~g~-~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~-~~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 229 EAATGK-PFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLK-KYSPDALRLFLLS-THYRKPLNFSEENLEEAK 299 (300)
T ss_dssp HHHHSS--SEEEEEEE--EEETTCE--TTTT---BHHHHHT-TS-HHHHHHHHHT-S-TTS-EEE-HHHHHHHH
T ss_pred HHhhCc-hHHHHHHHHHHHhhcCccccccCCCEEEHHHHhh-cCCHHHHHHHHhc-CCCCCccccCHHHHHHhc
Confidence 775322 2336666669999999999999999999999998 7999999999997 788999999999998863
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.8e-40 Score=325.05 Aligned_cols=207 Identities=20% Similarity=0.162 Sum_probs=171.8
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
-++|++++|.|.. ++.++|+|.|. |||++||||+|+ |+.+|+++||+|++|++|+|++|+||||+||+.+|+++|+
T Consensus 5 t~~~~~~~~~p~~~~~~~~y~~gpt--~y~~~HiGH~r~-~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~ 81 (213)
T cd00672 5 TLTRQKEEFVPLNPGLVTMYVCGPT--VYDYAHIGHART-YVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGL 81 (213)
T ss_pred CCCCceeeeecCCCCCceEEEeCCc--cCCCcccccchh-HHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCC
Confidence 3688999999864 45568877755 558999999997 7899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (648)
+|+++++++++.|+++++.|||++ |.|+|| |. ..
T Consensus 82 ~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt-----------------------------Wh-~e--------------- 116 (213)
T cd00672 82 SWKEVADYYTKEFFEDMKALNVLPPDVVPRV-----------------------------WH-IE--------------- 116 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------------------------hh-HH---------------
Confidence 999999999999999999999999 999999 32 11
Q ss_pred CCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 006368 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA 244 (648)
Q Consensus 165 ~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (648)
|. .+...
T Consensus 117 ---c~----------------------------------------------------------------------am~~~ 123 (213)
T cd00672 117 ---CS----------------------------------------------------------------------AMAMK 123 (213)
T ss_pred ---HH----------------------------------------------------------------------HHHHH
Confidence 10 01111
Q ss_pred HHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHH
Q 006368 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (648)
Q Consensus 245 ~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~ 324 (648)
++. .|.| ||..|.|++++|..++
T Consensus 124 ~lg------------------------------------------------------~~~d---ih~~G~Dl~fpH~~~~ 146 (213)
T cd00672 124 YLG------------------------------------------------------ETFD---IHGGGVDLIFPHHENE 146 (213)
T ss_pred HcC------------------------------------------------------CCcc---EEeecCCCCcChHHHH
Confidence 111 0234 8999999999999999
Q ss_pred HHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCcccc
Q 006368 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (648)
Q Consensus 325 pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs 394 (648)
.++..+..-. +.++.+++.|++.++|+|||||+||+|++.|+++ .+++|++|||+++ .++.++++|+
T Consensus 147 ~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~-~~~~da~R~~~l~-~~~~~~l~f~ 213 (213)
T cd00672 147 IAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK-KYDPEVLRLALLS-SHYRSPLDFS 213 (213)
T ss_pred HHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHH-HcCHHHHHHHHHh-CCcCCCCCCC
Confidence 9888774322 3456666669999999999999999999999998 7999999999997 4567898886
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-35 Score=330.11 Aligned_cols=338 Identities=15% Similarity=0.139 Sum_probs=253.1
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
.++++.|+.+.|||||++||||+|+ ++.+|+++|++|+.||+|.++.|+||+|++|...|...+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~-~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRS-AVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHH-HHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999 567999999999999999999999999999999999988899999999999999
Q ss_pred HHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEE-EceEeeeeccCcCcccccccccccCCCCccccCCCCCccc
Q 006368 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLI-ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (648)
Q Consensus 100 ~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy-~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c 178 (648)
+++++|||.+|.|.++++..|...+++++++|.++|++| +.++..|++.. .|..+
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~--~~~~~---------------------- 243 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT--EFGDD---------------------- 243 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch--hhCCC----------------------
Confidence 999999999999999998888899999999999999999 76665554321 11100
Q ss_pred cccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeec
Q 006368 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (648)
Q Consensus 179 ~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~ 258 (648)
+.-+..+..
T Consensus 244 --------------------~~~vl~ksd--------------------------------------------------- 252 (507)
T PRK01611 244 --------------------KDRVLIKSD--------------------------------------------------- 252 (507)
T ss_pred --------------------CCeEEEECC---------------------------------------------------
Confidence 000111110
Q ss_pred cCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccC
Q 006368 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (648)
Q Consensus 259 ~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p 338 (648)
+.. +|+-..+.|.- ..+.+ .| ++|+++|.|+..+-...+ +.+.++|.. ++
T Consensus 253 -------------G~~--~Y~t~Dia~~~------~k~~~-----~d-~~i~V~g~~q~~hf~~~~-~~~~~lg~~--~~ 302 (507)
T PRK01611 253 -------------GTY--TYFTRDIAYHL------YKFER-----FD-RVIYVVGADHHGHFKRLK-AALKALGYD--PD 302 (507)
T ss_pred -------------CCc--cchHHHHHHHH------HHHhh-----cC-EEEEEECCChHHHHHHHH-HHHHHcCCC--cc
Confidence 111 11111111110 01111 12 357888888864333333 566777753 33
Q ss_pred c-eEEee---ceee-cCCccccccCCcccChhhhhhcCCCc----------------hhHHHHHhhcCCCCCCccccHHH
Q 006368 339 K-TISVT---EYLN-YESGKFSKSKGIGVFGNDAKDTNIPV----------------EVWRYYLLTNRPEVSDTLFTWAD 397 (648)
Q Consensus 339 ~-~~~~h---g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~----------------d~lR~~ll~~~~~~~d~~fs~~~ 397 (648)
. .++.| |++. -+|+|||||+||+|++.|++++.++. |++||++++. ...+|++|+|+.
T Consensus 303 ~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~ 381 (507)
T PRK01611 303 ALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDL 381 (507)
T ss_pred cceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHH
Confidence 3 44555 6665 37889999999999999999833888 9999999975 456999999999
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 006368 398 LQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMS 477 (648)
Q Consensus 398 ~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~ 477 (648)
+.+..++... ++.+.+.|+.+++++... .+..+... ...++.+++|+..+..+.+.+.+++++++++.++..+.+
T Consensus 382 ~~~~~~~~~~-yvqYa~aR~~sil~k~~~---~~~~~~~~-~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~ 456 (507)
T PRK01611 382 ALSFEGNNPP-YVQYAHARICSILRKAAE---AGIDLLLA-LLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYE 456 (507)
T ss_pred HHhhcCCCcH-HHHHHHHHHHHHHHhhhc---cCcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 8765433333 888889999999987211 01111101 112567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 006368 478 ISSEGNAYLQES 489 (648)
Q Consensus 478 l~~~~N~yi~~~ 489 (648)
|++.+|.|++..
T Consensus 457 la~~f~~fY~~~ 468 (507)
T PRK01611 457 LAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHC
Confidence 999999999865
No 59
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-35 Score=310.75 Aligned_cols=477 Identities=20% Similarity=0.312 Sum_probs=336.6
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-------CCC-----
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCS----- 86 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-------g~~----- 86 (648)
.++++||+|-|.||.||.+||||+.+ .--.|+..-|.|++|++|+|.+|..+.|.||...|.+. |.+
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~Fs-lSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFS-LSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred cccCceeEeccccccCceeeccceee-hhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 46778999999999999999999998 56799999999999999999999999999998888543 211
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHHhhcCccc
Q 006368 87 ---------------------------------------------------------PKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 87 ---------------------------------------------------------~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
|..+...+...-.++++++|...
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 22222333344567788888777
Q ss_pred c---cccCCC-chHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc---cccCCC-----------------
Q 006368 110 D---NFGRTS-TPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV---EGTCPF----------------- 165 (648)
Q Consensus 110 D---~f~rT~-~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v---~g~cp~----------------- 165 (648)
| .|+.|. +|.|-..|++-|.+|.+.|.|..+..-.-||+.+++...|..- +|.-|.
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l 279 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKAL 279 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhc
Confidence 7 488774 7999999999999999999999999999999999998877542 121110
Q ss_pred -------------------------------------Ccc-----------------------------------ccC--
Q 006368 166 -------------------------------------EGC-----------------------------------NYE-- 171 (648)
Q Consensus 166 -------------------------------------~~c-----------------------------------~~~-- 171 (648)
+.| |++
T Consensus 280 ~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~i 359 (1080)
T KOG0437|consen 280 SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLI 359 (1080)
T ss_pred cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhc
Confidence 000 000
Q ss_pred ------------------------------------------------------------------------CCCCcccc
Q 006368 172 ------------------------------------------------------------------------SARGDQCE 179 (648)
Q Consensus 172 ------------------------------------------------------------------------~~~g~~c~ 179 (648)
..+||.|.
T Consensus 360 Ga~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~a 439 (1080)
T KOG0437|consen 360 GAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAA 439 (1080)
T ss_pred CCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhH
Confidence 12444332
Q ss_pred c--cCCC--CCcc-----------------------------------------cc------------CCCcCCCCCCCc
Q 006368 180 N--CGKL--LNAT-----------------------------------------DL------------KDPKCKVCRNAP 202 (648)
Q Consensus 180 ~--cg~~--l~~~-----------------------------------------el------------~~~~~~~~g~~~ 202 (648)
. |..+ -+|. +| ..++.+|+|...
T Consensus 440 e~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeC 519 (1080)
T KOG0437|consen 440 EVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDEC 519 (1080)
T ss_pred HHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCce
Confidence 0 1110 0000 11 135788999999
Q ss_pred EEeeccceeeec--hhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC------CCCce
Q 006368 203 QIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER------FKEKV 274 (648)
Q Consensus 203 ~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~------~~~~v 274 (648)
++..+.|||++. +.|+....+-++.+..+..-..+....+.+||. .|..||+..-|..+|.|. ..+.+
T Consensus 520 iVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~----~wacsRsyGLGTrlPWD~qyLvESLSDST 595 (1080)
T KOG0437|consen 520 IVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLG----QWACSRSYGLGTRLPWDEQYLVESLSDST 595 (1080)
T ss_pred EEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHH----hhhhhccccCCCCCCCcHHHHHHhcchhH
Confidence 999999999997 567888888888776432223344455677864 699999999999999874 34555
Q ss_pred eeeeec---------------------------ccchHHHhccccc--------------hHHHhhcCCCCCcceEEEEe
Q 006368 275 FYVWFD---------------------------APIGYVSITSCYT--------------NEWEQWWKNPENVELYQFMG 313 (648)
Q Consensus 275 ~yVWfD---------------------------a~~~yis~~~~~~--------------~~~~~~w~~p~~~~~i~~~G 313 (648)
||.-|- ..++|+.....++ .+|.-|+ |.| +.+.|
T Consensus 596 IYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~Y--PiD---lrvsG 670 (1080)
T KOG0437|consen 596 IYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFY--PID---LRVSG 670 (1080)
T ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhccc--cee---eeecc
Confidence 653221 1234443221111 2465555 567 68899
Q ss_pred ccccchh--------HhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcC
Q 006368 314 KDNVPFH--------TVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (648)
Q Consensus 314 kDi~~fH--------~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~ 385 (648)
||.+.-| ..+|| .-. .|+.+.++|||.++++|||||.|||.|.++.++ +||+|..|+.|+-.+
T Consensus 671 KDLi~NHLtfflynHvAl~~------~k~--WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaie-KFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 671 KDLIPNHLTFFLYNHVALFP------EKK--WPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIE-KFGADGTRLALADAG 741 (1080)
T ss_pred ccccccceeEeeeehhhhcc------ccc--CccceeeCceEEecchhhccccCCeeeHHHHHH-HhCccceeeeeeccc
Confidence 9998665 55555 223 569999999999999999999999999999998 899999999999877
Q ss_pred CCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 006368 386 PEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK 465 (648)
Q Consensus 386 ~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~ 465 (648)
.-..|.||.++...++ +-.|.+.+.-+..++... +. +- .+ ....-.|+.+.+.++.++..-.++++.
T Consensus 742 D~veDANF~ea~AnAa-----ILRLyt~~ew~eEm~~~~-----s~-Lr-tG-p~~~FaDrvf~nemN~~i~~t~~aye~ 808 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAA-----ILRLYTYVEWIEEMCENR-----SS-LR-TG-PASTFADRVFENEMNALIAKTERAYED 808 (1080)
T ss_pred CCcccchhHHhcccHH-----HHHHHHHHHHHHHHHhhH-----Hh-hc-cC-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7678999988765433 344555666666665531 11 10 01 112256888999999999999999999
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCC
Q 006368 466 VKLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 466 ~~~~~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
..++.|+..-+ ++...-..|-.... ..-.. .+++..+.+-+.||+||.||+|+-||+.++.+
T Consensus 809 ~~fk~aLK~Gfyd~qaArD~Yrel~g-------~~mh~----dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~ 871 (1080)
T KOG0437|consen 809 TLFKDALKYGFYDLQAARDMYRELCG-------EGMHR----DLVFRFIETQTLLLAPICPHLAEYIWRTVLKK 871 (1080)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhc-------ccccH----HHHHHHHHHHHHHHhccchHHHHHHHHHhccC
Confidence 99999998765 55544444433321 11111 23344667888999999999999999988754
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1e-34 Score=302.52 Aligned_cols=270 Identities=19% Similarity=0.262 Sum_probs=191.6
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc------------------chHHHHHHHHc
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAMED 83 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~------------------G~ki~~~A~~~ 83 (648)
.+++||||+ ||||.|||||+++ ++.+|+++||+|++|++|.|++|+||| |.|+...+...
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e-~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFRE-VITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHH-HHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 468999999 5999999999998 789999999999999999999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 84 g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
|+.+ +|++++.+.|++.|+.|||++|.|.+|....+....+.++..|.+++.|..--.+.-=-+..++++|
T Consensus 97 g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P-------- 167 (353)
T cd00674 97 GCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYP-------- 167 (353)
T ss_pred CCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCcee--------
Confidence 9987 9999999999999999999999777777777779999999999999997521111000012233333
Q ss_pred CCCccccCCCCCccccccCCCCCcc---c----cCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCCh
Q 006368 164 PFEGCNYESARGDQCENCGKLLNAT---D----LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQ 236 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~---e----l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 236 (648)
+-..|++||+.-.+. + -+...| .||+..+..-...
T Consensus 168 ----------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g--------------------------- 209 (353)
T cd00674 168 ----------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTG--------------------------- 209 (353)
T ss_pred ----------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCC---------------------------
Confidence 334677777432111 0 012234 2555443110000
Q ss_pred HHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccc
Q 006368 237 NAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 237 ~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi 316 (648)
+ | .+.|-+ .|+..|... ..| +-++|+|+
T Consensus 210 ~-----------~--------KL~Wr~---------------------------dW~~rW~~l---~Vd---~E~~GkDh 237 (353)
T cd00674 210 R-----------G--------KLTWRV---------------------------DWPMRWAIL---GVD---FEPFGKDH 237 (353)
T ss_pred C-----------c--------ccCCCC---------------------------Cchhhhhhc---CCC---EEeeCccc
Confidence 0 0 112222 122222111 233 67899999
Q ss_pred cch---hHhHHHHHhh-hcCCCcccCceEEeeceeecCCc-cccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCc
Q 006368 317 VPF---HTVMFPSTLL-GTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (648)
Q Consensus 317 ~~f---H~i~~pa~l~-a~g~~~~~p~~~~~hg~l~~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~ 391 (648)
... +.... +++. .+|.+ +| ..++|||++++|. |||||+||+|++.|+++ .+++|++|||+++......|+
T Consensus 238 ~~~ggs~~~~~-~i~~~ilg~~--~P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~-~~~~dalR~~~l~~~~~~~~i 312 (353)
T cd00674 238 ASAGGSYDTGK-EIAREIFGGE--PP-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLE-VAPPEVLRYLYARRKNPEKHI 312 (353)
T ss_pred cccccHHHHHH-HHHHHHhCCC--CC-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCC
Confidence 754 43332 3344 56643 45 4488999998876 99999999999999999 699999999999855367899
Q ss_pred cccHHH
Q 006368 392 LFTWAD 397 (648)
Q Consensus 392 ~fs~~~ 397 (648)
+|+++.
T Consensus 313 ~Fd~~~ 318 (353)
T cd00674 313 GFDLDI 318 (353)
T ss_pred CcChhH
Confidence 999853
No 61
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=2.8e-32 Score=306.09 Aligned_cols=345 Identities=16% Similarity=0.177 Sum_probs=249.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHH---H---------------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM---E--------------- 82 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~---~--------------- 82 (648)
++++.|..+.|||+|++||||+|++ +.+|+++|+++..||+|.-.--+.|.|..+-.-+. +
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~-~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNA-IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHH-HHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 5679999999999999999999995 66999999999999999866666666554432220 0
Q ss_pred -------------------------------cCCC-----HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHH
Q 006368 83 -------------------------------DNCS-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (648)
Q Consensus 83 -------------------------------~g~~-----~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~ 126 (648)
.|-. .+.+++...+.|++++++|||.||.|....+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 0100 1344455667899999999999998876666677778999
Q ss_pred HHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEee
Q 006368 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (648)
Q Consensus 127 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~ 206 (648)
+++.|.++|++|++ +..|.+.+. .|+ .+
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~~-----------------------~~d-----------------------~~----- 297 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLTL-----------------------FGD-----------------------KD----- 297 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEccc-----------------------ccC-----------------------CC-----
Confidence 99999999999976 666643210 000 00
Q ss_pred ccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHH
Q 006368 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (648)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yi 286 (648)
.|+.|-|. ++.. +++-..+.|.
T Consensus 298 --------------------------------------------~~~vl~ks------------DGt~--~Y~t~DiA~~ 319 (566)
T TIGR00456 298 --------------------------------------------KDRVLQKS------------DGTY--LYLTRDIAYH 319 (566)
T ss_pred --------------------------------------------CCeEEEEC------------CCCc--eechhhHHHH
Confidence 01111110 1111 2222223332
Q ss_pred HhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChh-
Q 006368 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGN- 365 (648)
Q Consensus 287 s~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~- 365 (648)
.. .+.+ ..| ++|.++|.|+..+-..++ +.++++|++ +|.++.+|+|.++.|.|||||+||+|++.
T Consensus 320 ~~------k~~~----~~d-~iI~V~g~~q~~h~~~v~-~~l~~lG~~--~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~d 385 (566)
T TIGR00456 320 LD------KLER----GFD-KMIYVWGSDHHLHIAQFF-AILEKLGFY--KKKELIHLNFGMVPLGSMKTRRGNVISLDN 385 (566)
T ss_pred HH------HHhc----CCC-EEEEEecCcHHHHHHHHH-HHHHHcCCC--CCCceEEEEEEEEECCCCCccCCceeeHHH
Confidence 11 1111 122 468888889864434444 678888864 67899999999999999999999999998
Q ss_pred ----------------------hhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhC
Q 006368 366 ----------------------DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (648)
Q Consensus 366 ----------------------~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k 423 (648)
++++ .++.|++||++++.. ..+|++|+++.+.+ .|+++.++++|.++|+.++++|
T Consensus 386 ll~~~~~ra~~~i~~~~~~~~~~~~~-~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK 462 (566)
T TIGR00456 386 LLDEASKRAGNVITIKNDLEEEDVAD-AVGIGAVRYFDLSQN-RETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRK 462 (566)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HhcccceeeHHhhcC-CCCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHh
Confidence 5555 588999999999966 57999999998877 5899999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCh
Q 006368 424 PPGQGYGSIVPDA--NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499 (648)
Q Consensus 424 ~~~~~~~~~~p~~--~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~ 499 (648)
. ..+..+.. .....++.+..|+..+..+.+.+.+++++++++.+++.+++|++.+|+|++.+ |.+..+++
T Consensus 463 ~----~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~ 534 (566)
T TIGR00456 463 A----DIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENE 534 (566)
T ss_pred c----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCH
Confidence 3 22212111 00122556888999999999999999999999999999999999999999987 45543333
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=5.6e-32 Score=297.95 Aligned_cols=268 Identities=18% Similarity=0.243 Sum_probs=182.2
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccch--------HH-HHHHHHcCCC-------
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--------AT-ETKAMEDNCS------- 86 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~--------ki-~~~A~~~g~~------- 86 (648)
.++|+|++ ||||.|||||+++ ++.+|+++|++|++|++|.|++|+||||. |. +..|+..|++
T Consensus 24 ~~~~~~g~-~psG~~HiG~~~e-~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 24 PVVVETGI-GPSGLPHIGNFRE-VARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred cEEEEeCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 38888888 7999999999998 78999999999999999999999999973 22 2344444444
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccC
Q 006368 87 ---PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 87 ---~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+++|++++.+.|++.++.+||++|.|.+|....+....+.+...|.+++.|..--.+.-=....++|+|
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P-------- 173 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSP-------- 173 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeee--------
Confidence 899999999999999999999999776665555557778888888888776521111100122333333
Q ss_pred CCCccccCCCCCccccccCCCCCcc----cc----CCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCC
Q 006368 164 PFEGCNYESARGDQCENCGKLLNAT----DL----KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~----el----~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (648)
+-..|++||+.+... +. +...| .||+..+..-... ..
T Consensus 174 ----------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~-~cG~~~~~~~~~g-------------------~~----- 218 (510)
T PRK00750 174 ----------FLPICPKCGKVLTTPVISYDAEAGTVTYDC-ECGHEGEVPVTGG-------------------HG----- 218 (510)
T ss_pred ----------eeeeCCCCCccceEEEEEEeCCCCEEEEEc-CCCCEEEEecCCC-------------------Cc-----
Confidence 345677888865422 11 11122 2554443110000 00
Q ss_pred hHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEecc
Q 006368 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315 (648)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkD 315 (648)
.+.|-+ .|+..|... ..+ +-..|+|
T Consensus 219 ----------------------KL~Wr~---------------------------dW~~rW~~l---~Vd---~e~~GkD 243 (510)
T PRK00750 219 ----------------------KLQWKV---------------------------DWPMRWAAL---GVD---FEPFGKD 243 (510)
T ss_pred ----------------------ccCCCC---------------------------CcHHHHHHc---CCC---EEeeCcc
Confidence 011211 233233221 233 6789999
Q ss_pred ccc-hhHhHHHHHhh-hcCCCcccCceEEeeceeecC-CccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCcc
Q 006368 316 NVP-FHTVMFPSTLL-GTGENWTLMKTISVTEYLNYE-SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 316 i~~-fH~i~~pa~l~-a~g~~~~~p~~~~~hg~l~~~-G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~ 392 (648)
+.. .+.. .-.+.. .+|.+ +|.. ++|||++.+ |+|||||+||+|++.|+++ .+++|++|||++...+..+|++
T Consensus 244 h~~~s~~~-~~~i~~~ilg~~--~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~-~~~pd~lR~~l~~~~~~~~~~~ 318 (510)
T PRK00750 244 HASASYDT-SKKIAREILGGE--PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLE-YAPPESLRLFMFARPKPAKRLD 318 (510)
T ss_pred cCcchHHH-HHHHHHHHcCCC--CCee-eeeeeEEeCCCCcccccCCCccCHHHHHH-HCCHHHHHHHHHhCCCCCCCCc
Confidence 987 4432 223443 55653 5544 788999987 9999999999999999998 7999999988886667779999
Q ss_pred ccH
Q 006368 393 FTW 395 (648)
Q Consensus 393 fs~ 395 (648)
|++
T Consensus 319 f~~ 321 (510)
T PRK00750 319 FDV 321 (510)
T ss_pred ccH
Confidence 998
No 63
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=2.4e-26 Score=257.10 Aligned_cols=338 Identities=12% Similarity=0.108 Sum_probs=238.0
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHH---HHcCC------------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA---MEDNC------------ 85 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A---~~~g~------------ 85 (648)
++++.|--..|+|+|++|+||+|++ +.+|+++|.++..||+|.-.--+.|.|..+-.-+ .+.|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~a-iiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRST-MIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhH-HHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHH
Confidence 5689999999999999999999996 5599999999999999988888888887654333 11111
Q ss_pred -------------------------------C------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHH
Q 006368 86 -------------------------------S------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIF 128 (648)
Q Consensus 86 -------------------------------~------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~ 128 (648)
. .+.+++...+.|++++++|||.||.|. .+..|...+.+++
T Consensus 191 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~--~es~~~~~~~~v~ 268 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNDLMEDFI 268 (562)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec--chHhhhhhHHHHH
Confidence 0 123344556789999999999999664 3446777789999
Q ss_pred HHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeecc
Q 006368 129 KKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (648)
Q Consensus 129 ~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~ 208 (648)
+.|.++|++|+.++..|.+.+. + |.
T Consensus 269 ~~L~~~g~~~e~dGa~~~~~~~--~---------------------------------------------g~-------- 293 (562)
T PRK12451 269 GILEEHDLLEESEGALVVNLEE--E---------------------------------------------GM-------- 293 (562)
T ss_pred HHHHHCCCEEecCCeEEEEecc--c---------------------------------------------CC--------
Confidence 9999999999887776643210 0 00
Q ss_pred ceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHh
Q 006368 209 HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSI 288 (648)
Q Consensus 209 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~ 288 (648)
+|..+-|. ++.. +++-..+.|+-
T Consensus 294 ------------------------------------------~~~vl~ks------------DGt~--~Y~t~DiA~~~- 316 (562)
T PRK12451 294 ------------------------------------------PPCLIRKS------------DGAT--IYATRDLTAAL- 316 (562)
T ss_pred ------------------------------------------CceEEEeC------------CCcc--ccchhHHHHHH-
Confidence 00001110 0111 11111122211
Q ss_pred ccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhh
Q 006368 289 TSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAK 368 (648)
Q Consensus 289 ~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l 368 (648)
..+.++ ..| ++|+++|.|+..+-..++ +++.++|..+.---.++.+|++..+|+||||.+||+|+++|++
T Consensus 317 -----~k~~~~---~~d-~~IyV~g~dq~~h~~~l~-~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLl 386 (562)
T PRK12451 317 -----YRQNTF---GFD-KALYVVGPEQSLHFNQFF-TVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVL 386 (562)
T ss_pred -----HHhhcc---CCC-EEEEEeCCcHHHHHHHHH-HHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHH
Confidence 011111 123 468888888864333344 5667777542111234555889899999999999999999999
Q ss_pred hc------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCC
Q 006368 369 DT------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424 (648)
Q Consensus 369 ~~------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~ 424 (648)
++ ..+.+++||++++..+ .++++|+|+.+.+ .+++-..++++.+.|+.++++|.
T Consensus 387 dea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~-~~g~t~pYiQYa~AR~~SIlrka 464 (562)
T PRK12451 387 EEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLK-FEGETGPYVQYTHARACSILRKE 464 (562)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhC-cCCCccHHHHHHHHHHHHHHHhc
Confidence 83 2668999999998544 6999999999766 34455669999999999999983
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 425 ~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.. ..........++.+..|+..+..+.+.+.+++++++++.++..+++|++.+|+|++..+
T Consensus 465 ~~-----~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~ 525 (562)
T PRK12451 465 SV-----EFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR 525 (562)
T ss_pred CC-----CccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 01100001125678899999999999999999999999999999999999999998765
No 64
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.8e-26 Score=249.11 Aligned_cols=341 Identities=16% Similarity=0.187 Sum_probs=245.1
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHH-------------------
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM------------------- 81 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~------------------- 81 (648)
.+++.|--..|+|+|++||||+|++ |.+|+++|.++..||+|.-.--+.|.|..|-.-+.
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~a-iiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNA-IIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhh-HHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 4689999999999999999999996 55999999999999999887777777765533220
Q ss_pred -------------H-cCC---------------C-----HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHH
Q 006368 82 -------------E-DNC---------------S-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAI 127 (648)
Q Consensus 82 -------------~-~g~---------------~-----~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~ 127 (648)
+ .+. . .+.+++.....+++++++|||.+|.|...++..+...+.++
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v 274 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV 274 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHH
Confidence 0 010 0 01266677788999999999999999877777777789999
Q ss_pred HHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeec
Q 006368 128 FKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDT 207 (648)
Q Consensus 128 ~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~ 207 (648)
++.|.++|++|+.++..+
T Consensus 275 v~~L~~~~~~~e~~GA~~-------------------------------------------------------------- 292 (577)
T COG0018 275 VEDLEEKGLLYEDDGALV-------------------------------------------------------------- 292 (577)
T ss_pred HHHHHhcCCEeeeCCeEE--------------------------------------------------------------
Confidence 999999999998443321
Q ss_pred cceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHH
Q 006368 208 NHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVS 287 (648)
Q Consensus 208 ~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis 287 (648)
+++++|. ... ..+++.|.|+ ++.++|. -..+.|.-
T Consensus 293 ----vdl~~~~-------~~g--------------------d~~~~vl~KS------------DGt~lY~--t~DIAy~~ 327 (577)
T COG0018 293 ----VDLLKFK-------KFG--------------------DDKDRVLQKS------------DGTYLYF--TRDIAYHL 327 (577)
T ss_pred ----Eehhhhh-------hcC--------------------CCCCeEEEEc------------CCCeeee--hhHHHHHH
Confidence 1222221 000 0223334432 2334433 22233321
Q ss_pred hccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEee-ce--eec-CCccccccCCcccC
Q 006368 288 ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVT-EY--LNY-ESGKFSKSKGIGVF 363 (648)
Q Consensus 288 ~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~h-g~--l~~-~G~KMSKS~gN~I~ 363 (648)
. .++ + ..| ++|.++|.|+..+-..+|- .+..+|..+ ++.++.| ++ +.. +|.||||..|++|+
T Consensus 328 ~------K~~--~--~~d-~~IyV~gadq~~~~~ql~~-~l~~~g~~~--~~~~~~h~~~~l~~~~~g~kmStR~G~~vt 393 (577)
T COG0018 328 Y------KFE--R--GFD-KLIYVLGADQHGHFKQLKA-VLELLGYGP--DKEVLLHQGVGLVRGGEGVKMSTRAGNVVT 393 (577)
T ss_pred H------HHh--c--CCC-EEEEEeCCcchhHHHHHHH-HHHHhcCCC--ccceEEEEEEeeeECCCCccccccCCceEE
Confidence 1 111 2 233 5699999999765555664 445556653 3344444 44 443 68899999999999
Q ss_pred hhhhhhcCCC----------------------chhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhh
Q 006368 364 GNDAKDTNIP----------------------VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421 (648)
Q Consensus 364 ~~~~l~~~~~----------------------~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~ 421 (648)
.+|+++ ..+ .|++||++++.++ .++++|+|+.+.+ ++++.+.++++.+.|+.+++
T Consensus 394 l~dlld-e~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~ls-fegNt~pYvQYA~ARi~SIl 470 (577)
T COG0018 394 LDDLLD-EAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALS-FEGNTAPYVQYAHARICSIL 470 (577)
T ss_pred HHHHHH-HHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHh-ccCCCchhHHHHHHHHHHHH
Confidence 999998 455 8999999998655 5999999999988 55689999999999999999
Q ss_pred hCCCCCCCCCCCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 422 AKPPGQGYGSIVPDAN---GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 422 ~k~~~~~~~~~~p~~~---~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
+|.... ..+... .......+.+|+..+..++..+.++.+++.++.....+.+|+..+|+|++.++
T Consensus 471 rka~e~----~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~ 538 (577)
T COG0018 471 RKAGED----ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP 538 (577)
T ss_pred Hhcccc----ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCC
Confidence 984311 111110 01223347899999999999999999999999999999999999999999875
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.95 E-value=1.2e-27 Score=261.25 Aligned_cols=256 Identities=19% Similarity=0.255 Sum_probs=170.3
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc------------------chHHHHHHHHc
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAMED 83 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~------------------G~ki~~~A~~~ 83 (648)
.+++|+|+++ |||.|||||+++ ++.+|+++|++|++|++|.|++++||| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e-~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFRE-VITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhh-hhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 3699999997 999999999998 789999999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCCch----H----------HHHHHHHHHHHHHHCCCEEEceEeeeeccC
Q 006368 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP----Q----------QTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (648)
Q Consensus 84 g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~----~----------~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 149 (648)
|++ ..|++++.+.|.+.++.|||+++.+. +|+- . +.+.+.+++...... +.
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s-~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-------------~~ 160 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFIR-ASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-------------KL 160 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEEE-HHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-------------cc
Confidence 997 99999999999999999999987553 2221 2 223333333332211 12
Q ss_pred cCcccccccccccCCCCccccCCCCCccccccCCCCCccc------cCCCcCCCCCCCcEEeeccceeeechhhHHHHHH
Q 006368 150 CKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATD------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEE 223 (648)
Q Consensus 150 ~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~e------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~ 223 (648)
.++|+| +-..|++||+.+.+.. -+...|. ||+..+..-+..-
T Consensus 161 ~~~~~P------------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c~-cG~~g~~~~~~g~------------- 208 (515)
T TIGR00467 161 EENWYP------------------ISVFCENCGRDTTTVNNYDNEYSIEYSCE-CGNQESVDIYTGA------------- 208 (515)
T ss_pred CCCcee------------------eeeecCCcCccCceEEEecCCceEEEEcC-CCCEEEEeecCCC-------------
Confidence 223322 3446778888754321 1223342 6655442111000
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCC
Q 006368 224 YINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNP 303 (648)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p 303 (648)
. .+.|-+ .|+..|..+ .
T Consensus 209 --~-------------------------------KL~Wkv---------------------------dW~~RW~~l---g 225 (515)
T TIGR00467 209 --I-------------------------------KLPWRV---------------------------DWPARWKIE---K 225 (515)
T ss_pred --c-------------------------------ccCCCC---------------------------CcHhhHhhh---C
Confidence 0 011211 122222111 2
Q ss_pred CCcceEEEEeccccchh----HhHHHHHhhhcCCCcccCceEEeeceeec--CCccccccCCcccChhhhhhcCCCchhH
Q 006368 304 ENVELYQFMGKDNVPFH----TVMFPSTLLGTGENWTLMKTISVTEYLNY--ESGKFSKSKGIGVFGNDAKDTNIPVEVW 377 (648)
Q Consensus 304 ~~~~~i~~~GkDi~~fH----~i~~pa~l~a~g~~~~~p~~~~~hg~l~~--~G~KMSKS~gN~I~~~~~l~~~~~~d~l 377 (648)
.+ +-..||||...- ....-| ..++|. .+|.. +.++|+++ +|+|||||+||+|++.|+++ .+++|++
T Consensus 226 V~---~Ep~GkDH~~~ggsy~~~~~ia-~~~l~~--~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~-~~~pdal 297 (515)
T TIGR00467 226 VT---FEPAGKDHAAAGGSYDTGVNIA-KEIFQY--SPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLE-VYTPEIT 297 (515)
T ss_pred cc---cccCCCCccCccCCchhHHHHH-HHHhCC--CCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHH-HcCHHHH
Confidence 22 445788886421 212212 234543 24443 44666644 56799999999999999999 6999999
Q ss_pred HHHHhhcCCCCCCccccHHHH
Q 006368 378 RYYLLTNRPEVSDTLFTWADL 398 (648)
Q Consensus 378 R~~ll~~~~~~~d~~fs~~~~ 398 (648)
||++++ ....++++|+++.+
T Consensus 298 R~~~l~-~~~~~~ldFd~~~l 317 (515)
T TIGR00467 298 RFLFAR-TKPEFHISFDLDVI 317 (515)
T ss_pred HHHHhc-cCCCCCCcCCHHHH
Confidence 999887 45579999999977
No 66
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.94 E-value=1.8e-25 Score=220.83 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=114.2
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
++.|..+.|+|||++||||+|+ ++.+|+++||+|+.|++|.++.++||+|+||+..|++.+. ++++++.+.+.|.+++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~-~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~ 78 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRN-AIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETY 78 (212)
T ss_pred CeEEEecCCCCCCCccccccHH-HHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3678889999999999999999 5779999999999999999999999999999999977654 8999999999999999
Q ss_pred hhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCc
Q 006368 103 KWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (648)
Q Consensus 103 ~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~ 150 (648)
++|||++|.|.++++. ...+++++++|.++|++|+..+.+|||+.+
T Consensus 79 ~~L~i~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 79 GRLDVRFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHhCCcCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 9999999999999854 889999999999999999998888887643
No 67
>PLN02286 arginine-tRNA ligase
Probab=99.93 E-value=3e-23 Score=232.39 Aligned_cols=340 Identities=11% Similarity=0.082 Sum_probs=235.3
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH----cC-------C---
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DN-------C--- 85 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----~g-------~--- 85 (648)
+++++.|--..|+|+|++|+||+|++ +.+|+++|.++..||+|.-.--+.|.|..+-.-+.. .+ .
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsa-iiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRST-IIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccch-hhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 44789999999999999999999996 559999999999999998888888888765433311 00 0
Q ss_pred ---------------C------------------------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHH
Q 006368 86 ---------------S------------------------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (648)
Q Consensus 86 ---------------~------------------------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~ 126 (648)
+ .+.+++.....|++.+++|||.+|.+ .+..|...+.+
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 0 11333444567889999999999973 34457777899
Q ss_pred HHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEee
Q 006368 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (648)
Q Consensus 127 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~ 206 (648)
+++.|.++|++|+.++..|.+. .+. +.+.+++.
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l------~~~-----------------------------------------~~~~vl~k 303 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFV------EGF-----------------------------------------DIPLIVVK 303 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeec------cCC-----------------------------------------CCceEEEE
Confidence 9999999999998877665421 100 00111111
Q ss_pred ccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHH
Q 006368 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (648)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yi 286 (648)
.+ +.+. ++-..+.|.
T Consensus 304 sD---------------------------------------------------------------Gt~t--Y~t~DIA~~ 318 (576)
T PLN02286 304 SD---------------------------------------------------------------GGFN--YASTDLAAL 318 (576)
T ss_pred CC---------------------------------------------------------------Cchh--hHHHHHHHH
Confidence 11 1111 111111111
Q ss_pred HhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCccc-C--ceEEeeceee-cCCccccccCCccc
Q 006368 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL-M--KTISVTEYLN-YESGKFSKSKGIGV 362 (648)
Q Consensus 287 s~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~-p--~~~~~hg~l~-~~G~KMSKS~gN~I 362 (648)
- ..++++ ..| ++|+++|.|+..+-..++ +++.++|..+.. . -.++.+|+++ .+|+||||..||+|
T Consensus 319 ~------~k~~~~---~~d-~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v 387 (576)
T PLN02286 319 W------YRLNEE---KAE-WIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVV 387 (576)
T ss_pred H------HHHhcc---CCC-EEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCee
Confidence 0 011111 112 457888888864333333 567777753210 1 2456668896 78899999999999
Q ss_pred Chhhhhhc----------------------------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 363 FGNDAKDT----------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 363 ~~~~~l~~----------------------------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
+++|++++ ..+.+++||++++..+ .++++|+|+.+.+ .+++-..++++.+
T Consensus 388 ~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~-~~g~t~pYlQYah 465 (576)
T PLN02286 388 RLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLD-LKGNTAVYLLYAH 465 (576)
T ss_pred EHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHh-hcCCChHHHHHHH
Confidence 99999983 2457999999998555 5999999999875 4566677999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPD-ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~-~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.|+.++++|.... .. .... ......++.++.|+..+..+.+.+.++.++++++..+..+.+|+..+|+|++.++
T Consensus 466 AR~~SIlrKa~~~-~~-~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~ 540 (576)
T PLN02286 466 ARICSIIRKSGKD-ID-ELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK 540 (576)
T ss_pred HHHHHHHHhccCc-cc-cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999983210 00 0000 0011235678899999999999999999999999999999999999999998763
No 68
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.80 E-value=5.3e-19 Score=163.88 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
|+++.|||||++||||+|+ ++.+|+++|++|++|++|.+++|+||+|++|...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~-~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRT-IVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHH-HHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998 6889999999999999999999999999999999999999999999999999999988
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.79 E-value=1.2e-20 Score=194.59 Aligned_cols=259 Identities=20% Similarity=0.335 Sum_probs=125.4
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccch--HHHHHH----HHc--CC------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--ATETKA----MED--NC------ 85 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~--ki~~~A----~~~--g~------ 85 (648)
++..+.|-|++ +|+|.+|||+++. ++.+|+++|.+|.+|.+|.+++.+||.|- ||-... -++ |+
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rE-v~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VP 98 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFRE-VLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVP 98 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHH-HHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB
T ss_pred CCccEEEecCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCC
Confidence 34455555555 9999999999998 78999999999999999999999999853 111110 011 21
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccccccCCC---ch----------HHHHHHHHHHHHHHHCCCEEEceEeeeecc
Q 006368 86 ----SPKEICDKYHVIHKDVYKWFDISFDNFGRTS---TP----------QQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (648)
Q Consensus 86 ----~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~---~~----------~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~ 148 (648)
....|++++.+.|.+.++.|||.++.+..|. +- ++...+.+++....... ..
T Consensus 99 dP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~--------- 167 (360)
T PF01921_consen 99 DPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RP--------- 167 (360)
T ss_dssp -TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------------
T ss_pred CCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CC---------
Confidence 1367999999999999999999987543332 11 24455555555543322 11
Q ss_pred CcCcccccccccccCCCCccccCCCCCccccccCCCCCcc--------ccCCCcCCCCCCCcEEeeccceeeechhhHHH
Q 006368 149 TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNAT--------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNK 220 (648)
Q Consensus 149 ~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~--------el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~ 220 (648)
++++| +-..|++||+..... .-+..+|..||+..+..-...- -||+
T Consensus 168 --~~y~P------------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~----- 221 (360)
T PF01921_consen 168 --ETYSP------------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQ----- 221 (360)
T ss_dssp --TT--S------------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE------
T ss_pred --CCeee------------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-cccc-----
Confidence 11111 233577777743221 1234567777776653222111 1221
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHH-hh
Q 006368 221 LEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWE-QW 299 (648)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~-~~ 299 (648)
|--+|. +|
T Consensus 222 -----------------------------------------------------------------------WkvDW~mRW 230 (360)
T PF01921_consen 222 -----------------------------------------------------------------------WKVDWPMRW 230 (360)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------CCCcChhhh
Confidence 111221 11
Q ss_pred cCCCCCcceEEEEeccccchhHhHHHHH--h-hhcCCCcccCceEEeeceeecCCc-cccccCCcccChhhhhhcCCCch
Q 006368 300 WKNPENVELYQFMGKDNVPFHTVMFPST--L-LGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVE 375 (648)
Q Consensus 300 w~~p~~~~~i~~~GkDi~~fH~i~~pa~--l-~a~g~~~~~p~~~~~hg~l~~~G~-KMSKS~gN~I~~~~~l~~~~~~d 375 (648)
+--..+ +--.|||+.-.-..+=.+- . .-+|. .|...+..+|++++|. |||||+||+|++.|+|+ -++++
T Consensus 231 ~~lgVd---fEp~GKDH~~~GGS~d~~~~I~~~i~g~---~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~-~~~PE 303 (360)
T PF01921_consen 231 AALGVD---FEPFGKDHASPGGSYDTSKRIAREILGY---EPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLE-YAPPE 303 (360)
T ss_dssp HHTT-S---EEEEEHHHHCTTSHHHHHHHHHHHCC--------EEEEE--EEES--------------HHHHHT-TS-HH
T ss_pred hhcCce---eccCCCccCCCCCChhhHHHHHHHHhCC---CCCCCCCeeEEEeCCCcccccCCCCccCHHHHHH-hcCHH
Confidence 111223 5679999865222222221 1 22443 3456778899988876 99999999999999998 79999
Q ss_pred hHHHHHhhcCCCCCCccccHH
Q 006368 376 VWRYYLLTNRPEVSDTLFTWA 396 (648)
Q Consensus 376 ~lR~~ll~~~~~~~d~~fs~~ 396 (648)
+|||++++..|. +..+|+.+
T Consensus 304 ~lr~l~~~~~P~-~~~~~~~~ 323 (360)
T PF01921_consen 304 SLRYLMARTKPN-KAKDFSFD 323 (360)
T ss_dssp HHHHHHHCS-TT-S-EEE--S
T ss_pred HHHHHHcccCCC-cceEeccC
Confidence 999999985554 66666665
No 70
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2e-17 Score=174.96 Aligned_cols=258 Identities=19% Similarity=0.271 Sum_probs=156.3
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchH------HH--HHHHH-cCC-------
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA------TE--TKAME-DNC------- 85 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~k------i~--~~A~~-~g~------- 85 (648)
..+.|-|++ +|+|.+|||++|. ++++|+++|-+|.+|++|.+++=+||++-- +- ...++ .|+
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rE-v~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFRE-VLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHH-HHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 456666666 9999999999998 789999999999999999999999998531 11 11111 132
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcCcccccccCCCc---h----------HHHHHHHHHHHHHHHCCCEEEceEeeeeccC
Q 006368 86 ---SPKEICDKYHVIHKDVYKWFDISFDNFGRTST---P----------QQTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (648)
Q Consensus 86 ---~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~---~----------~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~ 149 (648)
.+..|++++.+.|.+.++.+||.+..+..|.- - ++...+++++.+...+ +-
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~-------------~~ 163 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR-------------EL 163 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC-------------cc
Confidence 24689999999999999999999876533221 1 2344444444443332 11
Q ss_pred cCcccccccccccCCCCccccCCCCCccccccCCCCCccc-------cCCCcCCCCCCCcEEeeccceeeechhhHHHHH
Q 006368 150 CKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATD-------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLE 222 (648)
Q Consensus 150 ~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~e-------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~ 222 (648)
.+++.| +-..|++||+.+...- -+..+|. ||+..+
T Consensus 164 ~e~~~P------------------~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~------------------- 205 (521)
T COG1384 164 EEDWSP------------------FMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGE------------------- 205 (521)
T ss_pred cCCcee------------------ccccccccCCcceeEEEEecCCceEEEEec-CCccce-------------------
Confidence 222222 3446777887543211 0111121 122211
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCC
Q 006368 223 EYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKN 302 (648)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~ 302 (648)
..|+ .++..+|.- ..|+.. |+.-
T Consensus 206 ------------------------------v~ir---~g~~KL~WR---------------------vdWp~R---W~~l 228 (521)
T COG1384 206 ------------------------------VDIR---GGEGKLPWR---------------------VDWPMR---WAAL 228 (521)
T ss_pred ------------------------------eecc---ccCcccccC---------------------cCccch---hhcc
Confidence 0011 111111111 012211 2211
Q ss_pred CCCcceEEEEeccccchhHhHHHHHhhhc---CCCcccCceEEeeceeecCC-ccccccCCcccChhhhhhcCCCchhHH
Q 006368 303 PENVELYQFMGKDNVPFHTVMFPSTLLGT---GENWTLMKTISVTEYLNYES-GKFSKSKGIGVFGNDAKDTNIPVEVWR 378 (648)
Q Consensus 303 p~~~~~i~~~GkDi~~fH~i~~pa~l~a~---g~~~~~p~~~~~hg~l~~~G-~KMSKS~gN~I~~~~~l~~~~~~d~lR 378 (648)
..+ +--.||||.-.-..|=.+-..+- |. .+ ..-++..|++++| +|||||+||+|++.|.++ -+++++||
T Consensus 229 gVd---~EPfGKDH~a~ggSydtg~~I~~ei~g~--~p-P~~~~YE~i~lkg~~~mSsSkG~~i~~~dwle-v~~pE~lr 301 (521)
T COG1384 229 GVD---FEPFGKDHAAAGGSYDTGKRIAREIFGY--EP-PVPFVYEWILLKGGGKMSSSKGNVISLSDWLE-VAPPEVLR 301 (521)
T ss_pred Ccc---cccCCcccccccCchHHHHHHHHHhcCC--CC-CCCCceEEEEecCCcccccCCCcEEcHHHHHH-hcCHhHee
Confidence 223 45689998754444433333332 43 23 3456778888887 899999999999999998 79999999
Q ss_pred HHHhhcCCCCCCccccHHH
Q 006368 379 YYLLTNRPEVSDTLFTWAD 397 (648)
Q Consensus 379 ~~ll~~~~~~~d~~fs~~~ 397 (648)
|++++..|. +-.+|+.+.
T Consensus 302 y~~~r~kP~-r~~~~d~~~ 319 (521)
T COG1384 302 YLIARTKPN-RHIDFDFDL 319 (521)
T ss_pred eeeeecCCC-cceecCCCC
Confidence 999986564 444454443
No 71
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.76 E-value=5.5e-18 Score=154.01 Aligned_cols=128 Identities=35% Similarity=0.595 Sum_probs=113.7
Q ss_pred hhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 006368 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481 (648)
Q Consensus 402 ~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~ 481 (648)
+|+++++++||+++|+.+++.+ .+++.+|... .....+++++..+.++.+++.++|++|+++.|+..++++++.
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~----~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 74 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASK----YFGGVVPEFG--GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARA 74 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHH----HcCCcCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4789999999999999999988 6777776532 234567899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 482 GNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 482 ~N~yi~~~~pw~l~k~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+|+|++..+||++.++ +..++..+++++.++++.++++|+||||++|+++|++|
T Consensus 75 ~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 75 ANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 9999999999998865 45667889999999999999999999999999999865
No 72
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.72 E-value=7.7e-17 Score=171.16 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=94.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH-------c--------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-------D-------- 83 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~-------~-------- 83 (648)
..++++.|--..|+|+|++||||+|++ +.+|+++|+++..||+|.-.--+.|.|..+-.-+.. .
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~-iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNT-IIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHH-HHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhh-hhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 456689999999999999999999996 559999999999999999999999998876544310 0
Q ss_pred ----------------CC------------------------CHHHHHHH-HHHHHHHHHhhcCcccccccCCCchHHHH
Q 006368 84 ----------------NC------------------------SPKEICDK-YHVIHKDVYKWFDISFDNFGRTSTPQQTE 122 (648)
Q Consensus 84 ----------------g~------------------------~~~e~~~~-~~~~~~~~~~~l~i~~D~f~rT~~~~~~~ 122 (648)
.. ...+++.. +.+.+++.++++++.+|.|...++..+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 00 01223334 55678888999999999887666667788
Q ss_pred HHHHHHHHHHHCCCEEEceEeeeec
Q 006368 123 ACQAIFKKLLDNNWLIENTMQQPYC 147 (648)
Q Consensus 123 ~v~~~~~~L~~~G~iy~~~~~~~y~ 147 (648)
.+.++++.|.++|++|+.++..|..
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~ 200 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWID 200 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEe
Confidence 8999999999999999877666543
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.59 E-value=1.2e-14 Score=159.89 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=79.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|--.|+|||.+|||||+++ +..+.++| +|+..|+.-+||.+.+|... ...+.+.+.+++++
T Consensus 102 V~tRFaPsPtG~LHIGharaa-lln~~~Ar-----~~~G~~iLRidDTDpk~~R~-----------~~e~~~~I~edL~w 164 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAA-ILNDEYAK-----MYGGKFILRFEDTDPRTKRP-----------DPEAYDMILEDLKW 164 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEeEccCCCCcccc-----------hHHHHHHHHHHHHH
Confidence 667788999999999999985 66999999 58889999999999876221 12334678999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..++.| .|.+...++.++|.++|.+|.
T Consensus 165 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 999999776666 778899999999999999984
No 74
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.56 E-value=3.4e-14 Score=126.81 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=98.0
Q ss_pred hHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Q 006368 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSE 481 (648)
Q Consensus 403 n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i-~~l~~~ 481 (648)
+.++++.++|+++|+.+++.+ .+++..|. . .....|++++..+..+++++.++|++++|+.|++.+ +++.+.
T Consensus 2 ~~~~~~~~~~~l~R~~~~~~~----~~~~~~~~-~--~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAEE----LIETEGEL-E--ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHhccCCc-c--ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357899999999999999987 44444443 1 234678999999999999999999999999999997 999999
Q ss_pred HHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 482 GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 482 ~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+|.|++..+|| ....++.++++.++.+|+||||++|+++|++|
T Consensus 75 ~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 75 LDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99999998887 12346778999999999999999999999865
No 75
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.53 E-value=3.4e-13 Score=123.68 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=104.2
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al 472 (648)
||++.+... ..+..+++|++..+...... .+ .+..........++++...+..+++.+.++|+++++++|+
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al 71 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLED-----DD--EPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccc-----cC--ccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 566667655 57888888988865332111 11 1100001223567899999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 473 KTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 473 ~~i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
+.+++++. .+|+|++..+||.+. .+..++..++.++.+++++++++|+||||++|+++|++|
T Consensus 72 ~~i~~~~~~~~~N~Yi~~~~pW~~~-~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 72 TALYEFFWNDFCDWYLELVKPRLYG-EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHcC-CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 99999997 799999999999884 344567788999999999999999999999999999865
No 76
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.46 E-value=5.2e-13 Score=118.99 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=89.9
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~ 487 (648)
....||++|+.+++.+ ++++..|..........|+++++.+.++.+++.++|+++++++|+..++++++.+|+|++
T Consensus 7 ~~~~n~l~R~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~ 82 (117)
T cd07958 7 EGAYRFLNRVWRLVTE----LAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKK 82 (117)
T ss_pred HHHHHHHHHHHHHHHH----HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc
Confidence 3456788888888776 444544421001234568899999999999999999999999999999999999999998
Q ss_pred hhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 006368 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (648)
Q Consensus 488 ~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L 535 (648)
..+| +..++.++++.++++|+||||++|+++|++|
T Consensus 83 ~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 83 KDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred cccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 7654 4577888999999999999999999999865
No 77
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.45 E-value=2.3e-12 Score=124.25 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=106.2
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al 472 (648)
|+.+.+.+. +++.++++|.++.+...+.. +...............|++++..+..+.+++.++|++|+++.|+
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~-----~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~ 73 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLND-----FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVY 73 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccC-----CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 456677775 67999999999887654432 21100000012345678999999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHhhhhhhhc--cCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 473 KTAMSISS--EGNAYLQESQFWKLY--KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 473 ~~i~~l~~--~~N~yi~~~~pw~l~--k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..+++++. .+|.|++..+||.+. ++++. ...+..++..+++.++++|+||||++|+++|++||.
T Consensus 74 ~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 74 QALNNFCTVDLSAFYLDIIKDRLYCDAKDSLE-RRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHhcccceecCCCCCHH-HHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 99999995 789999999999873 22332 244667778889999999999999999999999984
No 78
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.41 E-value=3e-12 Score=126.58 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=77.4
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+|=-.|+|||.+||||+++ .+..|+++| ++++.|+..+||.+.+.+ + ....+.+.+.+++++|
T Consensus 3 ~~RfaPsPtG~lHiG~~rt-al~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wL 65 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARA-AILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWL 65 (240)
T ss_pred eEeCCCCCCCCccHHHHHH-HHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHc
Confidence 4456789999999999998 567999999 789999999999998874 1 1122233488999999
Q ss_pred CcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|+.+|..++.| +|.+..+++.++|.++|.+|.
T Consensus 66 Gl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 66 GVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 99999655555 788888899999999999996
No 79
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.9e-10 Score=115.83 Aligned_cols=344 Identities=15% Similarity=0.196 Sum_probs=218.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHH----HHHH----------
Q 006368 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT----ETKA---------- 80 (648)
Q Consensus 15 ~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki----~~~A---------- 80 (648)
..|.-+.+++.|.-..|+.--.+|+||+|++ |.+|.++|.+...|++|+-+--+-|.|+.. +---
T Consensus 181 ~~P~l~~KrvlVDFSSPNIAKeMHVGHLRST-IIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vs 259 (656)
T KOG4426|consen 181 KLPTLSVKRVLVDFSSPNIAKEMHVGHLRST-IIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVS 259 (656)
T ss_pred CCcccceeeEEEecCCCcHHHHhhhhhhhhh-hHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccC
Confidence 3576677899999999999999999999985 669999999999999998887777766542 1111
Q ss_pred ---------------------------HH-----cCCC------HHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHH
Q 006368 81 ---------------------------ME-----DNCS------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTE 122 (648)
Q Consensus 81 ---------------------------~~-----~g~~------~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~ 122 (648)
-+ +|-. +..+|+--.+.|...+++|.|+...- .+..|..
T Consensus 260 p~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESFYq~ 336 (656)
T KOG4426|consen 260 PPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESFYQD 336 (656)
T ss_pred CCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhhhhh
Confidence 00 0111 24577777889999999999987422 3346777
Q ss_pred HHHHHHHHHHHCCCEEEceEee-eeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCC
Q 006368 123 ACQAIFKKLLDNNWLIENTMQQ-PYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201 (648)
Q Consensus 123 ~v~~~~~~L~~~G~iy~~~~~~-~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~ 201 (648)
.+.++.+.|..+|++.+.++.. .|-+. |+-|
T Consensus 337 ~m~~vveel~~kglvee~~Gr~i~f~~g------------------------------------------------~~IP 368 (656)
T KOG4426|consen 337 RMAEVVEELKSKGLVEEDDGRRIMFPEG------------------------------------------------CDIP 368 (656)
T ss_pred HHHHHHHHHhcCCceeecCCceEeccCC------------------------------------------------CCcc
Confidence 8888899999999998776443 22111 2334
Q ss_pred cEEeecccee-eechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeec
Q 006368 202 PQIRDTNHLF-LDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFD 280 (648)
Q Consensus 202 ~~~~~~~~~f-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfD 280 (648)
+.++++..=| .+.+. ...+..-+.+...||.|
T Consensus 369 LtvVKSDGGftYdtsD----------------------laAl~yRl~EEkadwiI------------------------- 401 (656)
T KOG4426|consen 369 LTVVKSDGGFTYDTSD----------------------LAALKYRLNEEKADWII------------------------- 401 (656)
T ss_pred eEEEecCCCcccccch----------------------HHHHHHHHHHhhcCeEE-------------------------
Confidence 4333333222 11111 11122223333445532
Q ss_pred ccchHHHhccccchHHHhhcCCCCCcceEEEEecccc-chhHhHHHHHhhhcCCCcccCceEEee--ceee-cCCccccc
Q 006368 281 APIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV-PFHTVMFPSTLLGTGENWTLMKTISVT--EYLN-YESGKFSK 356 (648)
Q Consensus 281 a~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~-~fH~i~~pa~l~a~g~~~~~p~~~~~h--g~l~-~~G~KMSK 356 (648)
+++...+. .|.++ |-|--++.=++ +...++.+- |.++ -||+||-+
T Consensus 402 -----------------------------YVvD~GQs~Hf~t~-fkAar~~gwld-~~~~RV~HvgFGlVLGeD~KkFkT 450 (656)
T KOG4426|consen 402 -----------------------------YVVDSGQSQHFNTI-FKAARKAGWLD-PTYPRVEHVGFGLVLGEDKKKFKT 450 (656)
T ss_pred -----------------------------EEeeCchhHHHHHH-HHHHHHcCccC-CCccceeeeeeeeEEccCcccccc
Confidence 22222222 22332 22222221111 112233333 4444 56778888
Q ss_pred cCCcccChhhhhhcC----------------------------CCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHH
Q 006368 357 SKGIGVFGNDAKDTN----------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 357 S~gN~I~~~~~l~~~----------------------------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~ 408 (648)
..|.+|-..|+|+++ .+=..+.|.-++ ....+|.-||.+.|.+- ..+.+-
T Consensus 451 RsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~-hnR~~dY~FSFDkML~D-rGnTAv 528 (656)
T KOG4426|consen 451 RSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLS-HNRITDYIFSFDKMLED-RGNTAV 528 (656)
T ss_pred cccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhc-cccccceeeeHHHHhhc-cCccee
Confidence 888888777776521 111246777776 45568999999988652 366777
Q ss_pred HHhHHHHHHHHhhhCCCCCCCC--CCCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 006368 409 NLGNFINRVLSFIAKPPGQGYG--SIVPDAN-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k~~~~~~~--~~~p~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~y 485 (648)
++-+.+.|+.+++++....+.+ ..+...+ ...+++-+..|-..+..+.+-+..+++++-++..++.+.+|+..+..|
T Consensus 529 YLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~F 608 (656)
T KOG4426|consen 529 YLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEF 608 (656)
T ss_pred hhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999873211000 0000111 123556677888888999999999999999999999999999999999
Q ss_pred HHhhh
Q 006368 486 LQESQ 490 (648)
Q Consensus 486 i~~~~ 490 (648)
++++.
T Consensus 609 Y~~Cy 613 (656)
T KOG4426|consen 609 YDSCY 613 (656)
T ss_pred hhccE
Confidence 98875
No 80
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.24 E-value=6.4e-11 Score=110.93 Aligned_cols=90 Identities=27% Similarity=0.433 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH-HHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhc
Q 006368 445 TKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSI-SSE-GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEP 522 (648)
Q Consensus 445 d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l-~~~-~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P 522 (648)
|+++++.+..+.+.+.++|++|+|+.|+..++.+ ++. +|.|++..+||...+.+..... +..++.++++.++.+|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 6799999999999999999999999999999997 444 6999999999988765443444 789999999999999999
Q ss_pred cchHHHHHHHHHh
Q 006368 523 FMPSFSVEVNKQL 535 (648)
Q Consensus 523 ~~P~~s~~i~~~L 535 (648)
|||++|+++|++|
T Consensus 80 ~~P~~aEeiw~~l 92 (153)
T PF08264_consen 80 FMPFIAEEIWQRL 92 (153)
T ss_dssp TSHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHh
Confidence 9999999999877
No 81
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.23 E-value=3e-10 Score=109.87 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=102.5
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al 472 (648)
||++.+... .+.++++++|.++.++...... .++..............|++++..++.+++.+.++|++|+|+.|+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~---~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~ 76 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLD---GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAV 76 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh---CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 677887765 3459999999998886532210 121110000012245689999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhhhh--hhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 473 KTAMSISSE-GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 473 ~~i~~l~~~-~N~yi~~~~p--w~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..++.++.. +|.|++..++ |... +.........++..+++.+..+|+||||++|+++|++++-
T Consensus 77 ~~l~~f~~~~~~~Y~e~~K~~~~~~~--~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 77 RALLEFIDELTNWYIRRNRKRFWGEE--GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHHHhhhhHhhhchHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999865 4889987654 4322 1223344667788899999999999999999999999973
No 82
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.18 E-value=2.8e-10 Score=100.94 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=87.7
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~ 487 (648)
.+++|.+.|+..++.+ ++++..|........+.|+++++.++.+.+.+.++|++|+++.|+..+++++...|+|++
T Consensus 8 ~~~~n~~~r~~~~~~~----~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 8 RAFLNRLYRLLSFFRK----ALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 4578888888888765 344433321101124568899999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 006368 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM 524 (648)
Q Consensus 488 ~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~ 524 (648)
..+||.+.+. ....++.++.++++.++++|+|||
T Consensus 84 ~~~pw~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 84 ELKPALQTEE---LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HhhHHHcCch---hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999998652 344567788899999999999996
No 83
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.10 E-value=1.3e-09 Score=117.58 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|.|+|.+||||||++ |....+|| .+.-.|+.=++|.+.. .-.+.+.+.+.+++++|||.
T Consensus 7 FAPSPTG~lHiG~artA-L~n~l~Ar-----~~gG~fiLRIEDTD~~-------------Rs~~~~~~~I~e~L~wLGI~ 67 (445)
T PRK12558 7 FAPSPTGYLHVGNARTA-LLNWLYAR-----KHGGKFILRIDDTDLE-------------RSKQEYADAIAEDLKWLGIN 67 (445)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHH-----HhCCEEEEEeccCCcc-------------cchHHHHHHHHHHHHHcCCC
Confidence 34789999999999985 55666666 4677788888887741 22356677899999999999
Q ss_pred cccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 109 FDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 109 ~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+|.+++-+ .....++++.++|.++|++|.
T Consensus 68 ~De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 68 WDRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CCccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 99776555 444689999999999999984
No 84
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.08 E-value=2e-09 Score=118.15 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=63.6
Q ss_pred CCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 30 ~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
.|.|+|.+||||+|++ |....+||- ++-.|+.=+||.+.. .....+.+.+.+++++||+.+
T Consensus 7 APsPtG~lHiG~~rta-l~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~i~~~L~wlGl~~ 67 (470)
T TIGR00464 7 APSPTGYLHIGGARTA-LFNYLFAKH-----TGGEFILRIEDTDLE-------------RNIEEAEEAILEGLKWLGISW 67 (470)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCc-------------cCChHHHHHHHHHHHHCCCCC
Confidence 4789999999999995 668888872 233566666666541 122345667899999999999
Q ss_pred c-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
| --++.+ ++.+.-+++..+|.++|.+|.
T Consensus 68 de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 68 DEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 9 333333 445666788889999999984
No 85
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.07 E-value=1.2e-08 Score=111.57 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=71.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|||.+|||||+++ +....+||- ++=.|+.=+||.+. ..-...+.+.+.+++++
T Consensus 12 v~tRFAPsPtG~LHiGharaA-lln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAA-LLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHH
Confidence 667778899999999999985 558888873 23355556666554 12233456778999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..++++ .+.+...+...+|+++|.+|.
T Consensus 73 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 73 IEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred hCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 999999765555 667888899999999999984
No 86
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.04 E-value=1.8e-08 Score=111.34 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=78.3
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
-++|==+|.|||.+|||||+++ +..+.+|| .|+..|+.-+||.+.+ + -...+.+.+.++++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaa-lln~~~Ar-----~~~G~~iLRidDTDp~---R----------~~~e~~~~I~edL~ 153 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAA-ILNQYFAK-----KYKGKLIIRFDDTDPR---R----------VKPEAYDMILEDLD 153 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----hcCCEEEEEeCcCCcc---c----------ccHHHHHHHHHHHH
Confidence 3777788999999999999985 66999987 4677888889998764 1 11235677899999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+||+.+|..+++| .|.+...++.++|+++|.+|.
T Consensus 154 wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 154 WLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 9999999877777 788999999999999999984
No 87
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.02 E-value=4e-08 Score=108.55 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHH
Q 006368 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC 91 (648)
Q Consensus 12 ~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~ 91 (648)
.+..+|...+.+ ++|==+|.|||.+|||||+++ +....+||- + +=.|+.=+||.+-. .-.
T Consensus 41 ~~~~L~~a~~~~-v~tRFAPsPtGyLHIGharaA-llN~l~Ar~---~--gG~~iLRiEDTDp~-------------R~~ 100 (601)
T PTZ00402 41 DKLQLTNAEEGK-VVTRFPPEASGFLHIGHAKAA-LINSMLADK---Y--KGKLVFRFDDTNPS-------------KEK 100 (601)
T ss_pred ccccCCCCCCCe-eEEeeCCCCCCcccHHHHHHH-HHHHHHHHH---h--CCEEEEEEcCCCCc-------------ccC
Confidence 444445332222 667778899999999999985 568888883 2 33555556665532 233
Q ss_pred HHHHHHHHHHHhhcCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEE
Q 006368 92 DKYHVIHKDVYKWFDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLI 138 (648)
Q Consensus 92 ~~~~~~~~~~~~~l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy 138 (648)
..+.+.+.+++++||+.+|. .++.+ .|.+...++..+|+++|.+|
T Consensus 101 ~e~~d~IleDL~WLGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 101 EHFEQAILDDLATLGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHHHHHCCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 45567789999999999985 33445 67788889999999999998
No 88
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.96 E-value=6e-09 Score=111.92 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006368 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD 110 (648)
Q Consensus 31 Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D 110 (648)
|.|+|.+||||+|++ |....+||- +.=.|+.=++|.+.. .....+.+.+.+.+++||+.+|
T Consensus 6 PSPTG~LHiG~artA-L~n~l~Ar~-----~gG~fiLRiEDTD~~-------------R~~~e~~~~I~~~L~WlGl~wD 66 (433)
T PRK12410 6 PSPTGDMHIGNLRAA-IFNYIVAKQ-----QNEDFLIRIEDTDKE-------------RNIEGKDKEILEILNLFGISWD 66 (433)
T ss_pred CCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCC-------------cCChHHHHHHHHHHHHcCCCCC
Confidence 789999999999995 668888773 233455555665541 1223445678899999999999
Q ss_pred cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 111 NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 111 ~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
--++.+ ++...-+++.++|.++|.+|.
T Consensus 67 e~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 67 KLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 644455 556777888999999999984
No 89
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.95 E-value=3.5e-08 Score=108.17 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|||.+|||||+++ +....+||. ++-.|+.=+||.+.. .-...+.+.+.+++++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSI-CLNFGLAQD-----YGGKCNLRFDDTNPE-------------KEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEECCCCCC-------------cCChHHHHHHHHHHHH
Confidence 567777899999999999985 558888874 334555556665542 2223456778899999
Q ss_pred cCcccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+| .-+.++ .|.+...+...+|+++|.+|.
T Consensus 91 LGi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 91 LGFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred cCCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 999995 333344 444555566679999999984
No 90
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.6e-07 Score=99.36 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=119.3
Q ss_pred ceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhc----------------
Q 006368 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDT---------------- 370 (648)
Q Consensus 307 ~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~---------------- 370 (648)
++|+++...+--+.+.++ -++...|.+|.-+-..+..|- +.=||+.+|+++...|++++
T Consensus 326 r~iYVvd~~Q~~hf~~lf-~ilk~mg~~~a~~~qHV~~G~----v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~ 400 (567)
T KOG1195|consen 326 RLIYVVDSQQKDHFCQLF-EILKKMGFDWAKKLQHVNFGR----VQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKP 400 (567)
T ss_pred eEEEEechHHHHHHHHHH-HHHHHhCchhhhhcceecccc----cccccccCCceeeHHHHHHHHHHHHHHHHHhccCCC
Confidence 346666664433334444 467777877754433333333 35699999999998888752
Q ss_pred -----------CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCC---
Q 006368 371 -----------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDA--- 436 (648)
Q Consensus 371 -----------~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~--- 436 (648)
..+.-++..-.+. +...++..|+|+.+-. +|.+-.-+|.+..+|..++.++ ++...++.
T Consensus 401 ~~~~~~~~vad~lg~sAviv~d~k-~rr~s~yeF~w~~~~~-~~gdtg~yLQY~HsRL~Slerk-----~~~~~~~~l~~ 473 (567)
T KOG1195|consen 401 VQMANPDEVADRLGLSAVIVQDFK-GRRISNYEFSWNRVLS-FEGDTGPYLQYTHSRLRSLERK-----FSDVTLDDLDE 473 (567)
T ss_pred CCCCCHHHHHHHHhhHHHHHHHHH-HHhcccceEEhhhhhe-ecCCchHHHHHHHHHHHHHHHh-----ccccCchhhhc
Confidence 1455566666554 3445899999998876 6788888999999999999987 43332211
Q ss_pred -C-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 437 -N-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 437 -~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
. ....++.-..|+..+..+.+.+..+++.++....+..+..|+..++..+...
T Consensus 474 ~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l 528 (567)
T KOG1195|consen 474 IDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKIL 528 (567)
T ss_pred cchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhhe
Confidence 0 0111222456888899999999999999999999999999999999887653
No 91
>PLN02907 glutamate-tRNA ligase
Probab=98.93 E-value=6.2e-08 Score=111.09 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
-++|==+|.|||.+|||||+++ +....+||- + +=.|+.=+||.+. ..-...+.+.+.++++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~---~--~G~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~ 273 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAA-LLNQYFARR---Y--KGKLIVRFDDTNP-------------SKESDEFVENILKDIE 273 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHH-HHHHHHHHH---h--CCEEEEEecCCCC-------------CcCChHHHHHHHHHHH
Confidence 3677778899999999999985 568888883 2 3355555666554 1122345677899999
Q ss_pred hcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 104 ~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+||+.+|..++++ .+.+...+...+|+++|.+|.
T Consensus 274 wLG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 274 TLGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HcCCCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 9999999766666 677888999999999999994
No 92
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.93 E-value=2.4e-08 Score=98.54 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=60.8
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|.|+|.+||||++++ +....+||- ++-.|+.=+||.+.+ .-...+.+.+.+++++||+.
T Consensus 6 FAPsPtG~lHlG~~r~a-l~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~ 66 (230)
T cd00418 6 FAPSPTGYLHIGHARTA-LFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLD 66 (230)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC
Confidence 35789999999999985 568888874 344555666666542 12234567788999999999
Q ss_pred ccc-ccCCCchHHHHHHHHHHHHHHHCC
Q 006368 109 FDN-FGRTSTPQQTEACQAIFKKLLDNN 135 (648)
Q Consensus 109 ~D~-f~rT~~~~~~~~v~~~~~~L~~~G 135 (648)
+|. -++.+ .+.+.-++..++|.++|
T Consensus 67 wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 67 WDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 995 22233 55666777888888888
No 93
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.92 E-value=2e-08 Score=109.87 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=69.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.+|==.|.|||.+|||||+++ +....+||. ++-.|+.=+||.+. ..-...+.+.+.+++++
T Consensus 52 v~tRFaPsPtG~LHiGharaa-lln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSM-NLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEMVKW 112 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHHHHH
Confidence 456667899999999999985 558888874 23455555666552 22334566788999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..+.++ .|.+...+...+|+++|.+|.
T Consensus 113 LGi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 113 MGWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred cCCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 999999665444 556666688889999999984
No 94
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.92 E-value=1e-08 Score=112.71 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=66.8
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+|==.|.|+|.+||||+|++ +..-.+||- +.=.|+.=++|.+.. .....+.+.+.+.+++|
T Consensus 6 ~~RfAPSPtG~lHiG~~rta-l~n~l~Ar~-----~~G~fiLRieDtD~~-------------R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTA-LFNWLFARH-----HGGKFILRIEDTDQE-------------RSTEEAEEAILEGLKWL 66 (476)
T ss_pred eEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHC
Confidence 34445789999999999996 558888774 334566666666541 23344566788999999
Q ss_pred Ccccccc--------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDNF--------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~f--------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|+.+|-- ++.+ ++.+.-+++.++|.++|.+|.
T Consensus 67 Gl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 67 GLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 9999932 2333 556788888999999999984
No 95
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.91 E-value=2.9e-08 Score=108.62 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=65.1
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
==+|.|||.+|||||+++ +....+||- ++-.|+.=+||.+.. .-...+.+.+.+++++||+
T Consensus 4 RFaPsPtG~LHiG~ar~a-l~n~~~A~~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~wLG~ 64 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSI-CLNFGYAKY-----YNGTCNLRFDDTNPV-------------KEDPEYVESIKRDVEWLGF 64 (522)
T ss_pred ecCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEEcCCCcc-------------cCChHHHHHHHHHHHHcCC
Confidence 346899999999999985 558888873 334556666665541 1223456778999999999
Q ss_pred ccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 108 SFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 108 ~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
.+| ..+..+ .|.....+...+|+++|.+|.
T Consensus 65 ~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 65 KWEGKIRYSS--DYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCCCCceEcc--ccHHHHHHHHHHHHHcCCEEe
Confidence 996 333344 455666677799999999984
No 96
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.89 E-value=5.9e-08 Score=95.88 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=69.0
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
||==.|.|+|.+||||++++ +....++|- ++-.|+.=+||.+.. .-...+.+.+.+++++|
T Consensus 3 ~~RFAPsPtG~lHlG~~~~a-l~~~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wl 63 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAI-LLNFGYAKK-----YGGRCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWL 63 (238)
T ss_pred eEecCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEecCCCCc-------------ccchHHHHHHHHHHHHc
Confidence 34445899999999999985 668888874 334566666776643 22334567789999999
Q ss_pred CcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|+.+|.-++.+ ++.+.-++...+|.++|.+|.
T Consensus 64 Gl~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 64 GIKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 99999443344 667888889999999999996
No 97
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.88 E-value=5.4e-08 Score=111.28 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=70.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==+|.|||.+|||||+++ +....+||- |+-.|+.=+||.+.. .-...+.+.+.+++++
T Consensus 32 v~tRFaPsPtG~lHiGhar~a-lln~~~A~~-----~~G~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSI-LLNFGIARD-----YGGRCHLRMDDTNPE-------------TEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCCCCCC-------------cCChHHHHHHHHHHHH
Confidence 667778899999999999985 557777773 334566666775542 1223456778999999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|. .+.++ .|.+...++..+|+++|.+|.
T Consensus 93 LG~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 93 LGFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred cCCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc
Confidence 9999984 33445 677888888999999999984
No 98
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-08 Score=109.49 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=70.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|||.+||||||++ |....+||. |.=.|+.=+||.+.+ .-...+.+.+.+++++
T Consensus 10 v~tRFAPsPtG~LHiG~artA-l~N~~~Ar~-----~~G~fiLRiEDTD~~-------------R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTA-LLNYLYARK-----YGGKFILRIEDTDPE-------------RETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHH-HHHHHHHHH-----hCCEEEEEecCCCCC-------------CCCHHHHHHHHHHHHh
Confidence 666677899999999999996 558888884 233455555665541 1122445678899999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|- .++.| ++...-.+...+|+++|.+|.
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 9999997 45556 677888899999999999983
No 99
>PLN02859 glutamine-tRNA ligase
Probab=98.86 E-value=6.3e-08 Score=109.64 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==+|.|||.+|||||+++ +....+||. +.-.|+.=+||.+. ..-...+.+.+.+++++
T Consensus 265 V~tRFaPsPtG~LHiGharaa-llN~~~Ar~-----~~G~~~LRieDTdp-------------~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAM-FVDFGLAKE-----RGGCCYLRFDDTNP-------------EAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEecCCCC-------------CccchHHHHHHHHHHHH
Confidence 456667899999999999985 558888885 23345555666552 22334566778999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|.-++++ .|.+..-+...+|+++|.+|.
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEe
Confidence 999988654555 334334445677999999984
No 100
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.85 E-value=4.9e-08 Score=106.68 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCC-CCC
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP-EVS 389 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~-~~~ 389 (648)
.|.|++. |+...-.++.++|. ..| .+.++.++. .+|.||||+.|. +.+.++.+.+|.+++++=|+++.+- .+.
T Consensus 202 RG~d~~~-~t~~q~~l~~aLG~--~~p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~ 276 (513)
T PRK14895 202 RGDDHLT-NAARQLAIYQAFGY--AVP-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGD 276 (513)
T ss_pred ECchHhh-hHHHHHHHHHHcCC--CCC-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 7787763 33344456777884 344 677778887 999999999987 5788888889999999998885331 122
Q ss_pred CccccHHHHHHH
Q 006368 390 DTLFTWADLQAK 401 (648)
Q Consensus 390 d~~fs~~~~~~~ 401 (648)
+--|+.+.+.+.
T Consensus 277 ~e~~~~~el~~~ 288 (513)
T PRK14895 277 DEIISMTQAIDW 288 (513)
T ss_pred cCCCCHHHHHhh
Confidence 234777766554
No 101
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.82 E-value=6.7e-08 Score=96.23 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=49.7
Q ss_pred EEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcC
Q 006368 311 FMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (648)
Q Consensus 311 ~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~ 385 (648)
+-|+|++. |+...-+++.++|.+ .| .+.++..+ ..+|.|||||.|+ .++..+.+.++.+.+++.|++..+
T Consensus 123 iRG~D~~~-~t~~q~~l~~aLg~~--~p-~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 123 IRGEEHLS-STPKQILLYEALGWE--PP-KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred EEChhhhh-ChHHHHHHHHHcCCC--CC-ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 46777653 233333566677753 44 44455665 6899999999999 688888777899999999998643
No 102
>PLN02627 glutamyl-tRNA synthetase
Probab=98.76 E-value=6.2e-08 Score=106.05 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|+|.+||||+|++ |....+||- ++-.|+.=++|.+.. .....+.+.+.+++++
T Consensus 46 vr~RFAPSPTG~LHiG~aRtA-L~n~l~Ar~-----~gG~fiLRIEDTD~~-------------R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTA-LFNYLFARS-----KGGKFVLRIEDTDLA-------------RSTKESEEAVLRDLKW 106 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHH
Confidence 334445689999999999995 668888883 344555666665541 1233456678899999
Q ss_pred cCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|||.+|.- ++.+ ++.+.-+++.++|.++|.+|.
T Consensus 107 LGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred cCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 99999942 2223 556777888899999999984
No 103
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.55 E-value=5.7e-07 Score=94.03 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=58.9
Q ss_pred CCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 30 ~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
.|.|+|.+|||||+++ |....+|| .+ +=.|+.=+||.+.+ .. ...+.+.+.+++++||+.+
T Consensus 7 APsPtG~lHiG~~r~a-l~n~~~Ar---~~--~G~~iLRieDtD~~---------R~----~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGYLHIGHARTA-LLNYLFAR---KY--GGKFILRIEDTDPE---------RC----RPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS-BHHHHHHH-HHHHHHHH---HT--TSEEEEEEETSSTT---------TC----HHHHHHHHHHHHHHHT---
T ss_pred CCCCCCCcccchhHHH-HHHHHHHh---cc--CceEEEeccccccc---------cc----hhhHHHHHHhheeEEEEec
Confidence 4789999999999995 56888887 22 33455555665542 11 2344566889999999999
Q ss_pred c-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
| ..++.+ .+.+.-++..++|.++|.+|.
T Consensus 68 D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 DYGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp STCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 8 333444 677888899999999999984
No 104
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.09 E-value=9e-05 Score=69.60 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=89.0
Q ss_pred CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCC-CC-CCCCChHHHHHH
Q 006368 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP-DA-NGAESHQLTKTL 448 (648)
Q Consensus 371 ~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p-~~-~~~~~~~~d~~l 448 (648)
..+.|++||++++..+ .++.+|+++.+.. .+++-...+.+.+.|+.+++++... ..... .. ...-.++.++.|
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~-~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLS-FEGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHh-hcCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHH
Confidence 4678999999998554 5999999998765 3455677999999999999988321 01100 00 011224568899
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 449 AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 449 ~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
+..+....+.+..++.+.+++.++..+.+|....|.|++...
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~ 118 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP 118 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999998763
No 105
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=8.3e-05 Score=77.65 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=54.1
Q ss_pred hHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcC--CCCCCccccHHH
Q 006368 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR--PEVSDTLFTWAD 397 (648)
Q Consensus 320 H~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~--~~~~d~~fs~~~ 397 (648)
|.+++-| .| |++|+-...-=.++.+|.|.||..|. +.+..+.+.+|=|+++==|++..+ ....+.-||.++
T Consensus 254 H~lLYkA----fg--W~pPkFaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~e 326 (524)
T KOG1149|consen 254 HILLYKA----FG--WQPPKFAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEE 326 (524)
T ss_pred HHHHHHH----hC--CCCCceeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHH
Confidence 5544444 45 77887433334456899999999986 677888777888898887777542 334455678888
Q ss_pred HHHHhhHHH
Q 006368 398 LQAKSNNEL 406 (648)
Q Consensus 398 ~~~~~n~~l 406 (648)
+.+.+|-+.
T Consensus 327 LieqF~i~~ 335 (524)
T KOG1149|consen 327 LIEQFSIER 335 (524)
T ss_pred HHHHhchhh
Confidence 877655433
No 106
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.85 E-value=2.9e-05 Score=79.00 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 30 ~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
.|.|+|.+||||++++ |....++|- +.-.|+.=+||.+.. .....+.+.+.+++++|||.+
T Consensus 6 APSPtG~lHiG~~rtA-L~n~l~Ar~-----~gG~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~w 66 (272)
T TIGR03838 6 APSPSGPLHFGSLVAA-LGSYLDARA-----HGGRWLVRIEDLDPP-------------REVPGAADDILRTLEAYGLHW 66 (272)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCC
Confidence 4789999999999995 668888882 233455555555541 112244567899999999999
Q ss_pred cc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 110 DN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 110 D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|. -++.+ ++.+.-++..++|.++|.+|.
T Consensus 67 De~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 67 DGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 94 22344 566788888999999999984
No 107
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.70 E-value=0.0012 Score=69.58 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=47.6
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
++|.+++ -|+|.+||||..+. + ..+++...|++|++..+ |.|-.-. ..+..+. -.......+..++-
T Consensus 3 ~~v~~G~-~PTG~~HlG~~l~~-~----~~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~-~~~~~~~~~~~~~l 69 (328)
T TIGR00233 3 FRVLTGI-QPSGKMHLGHYLGA-I----QTKWLQQFGVELFICIA-DLHAITV-----KDNTDPD-ALRKAREELAADIL 69 (328)
T ss_pred CEEEEee-CCCcHhHHHHHHHH-H----HHHHHHhCCCCEEEEee-cchhhcC-----CCCCCHH-HHHHHHHHHHHHHH
Confidence 4566666 78899999997663 2 33444466999877654 3332110 0111222 22333444566777
Q ss_pred hcCcccc---cccCCCchHHHH
Q 006368 104 WFDISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 104 ~l~i~~D---~f~rT~~~~~~~ 122 (648)
++|+.++ .|..+.-++|.+
T Consensus 70 A~GlDp~k~~if~qS~~~e~~e 91 (328)
T TIGR00233 70 AVGLDPKKTFIFLQSDYPEHYE 91 (328)
T ss_pred HhCcChhheEEEEcCCcHHHHH
Confidence 8898886 344444444433
No 108
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.61 E-value=0.00059 Score=71.81 Aligned_cols=81 Identities=16% Similarity=0.285 Sum_probs=48.3
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..++ + -.+.+.+...|.+++|... |-|-. .. ..+|.++ .++......++-++|+
T Consensus 8 sGi-qPTG~~HLGnylga-~--k~~~~lq~~~~~~~~~~IA-DlHal---t~----~~~~~~l-~~~~~~~~~~~lA~Gl 74 (332)
T PRK12556 8 TGI-KPTGYPHLGNYIGA-I--KPALQMAKNYEGKALYFIA-DYHAL---NA----VHDPEQF-RSYTREVAATWLSLGL 74 (332)
T ss_pred EEE-CCCCcchHHHHHHH-H--HHHHHHHHhcCCeEEEEEe-chhhc---cC----CCCHHHH-HHHHHHHHHHHhheee
Confidence 444 56699999997763 2 3344555666776766543 44432 10 1255544 3444556777889999
Q ss_pred ccc---cccCCCchHHH
Q 006368 108 SFD---NFGRTSTPQQT 121 (648)
Q Consensus 108 ~~D---~f~rT~~~~~~ 121 (648)
+++ .|..+.-++|.
T Consensus 75 DP~k~~if~qS~v~~~~ 91 (332)
T PRK12556 75 DPEDVIFYRQSDVPEIF 91 (332)
T ss_pred cccceEEEECCCchHHH
Confidence 986 45555656664
No 109
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.59 E-value=0.00013 Score=75.18 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|+|.+||||++++ |....++|- . +-.|+.=+||.+.+ .-...+.+.+.+++++
T Consensus 6 v~~RFAPSPTG~LHlG~~rtA-L~n~l~Ar~---~--~G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAA-LGSWLDARA---H--GGRWLLRIEDIDPP-------------REVPGAADAILADLEW 66 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHH-HHHHHHHHH---c--CCEEEEEECcCCCC-------------ccchHHHHHHHHHHHH
Confidence 445556789999999999995 557777773 3 33455555665541 1223446778999999
Q ss_pred cCccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|- -++.+ ++...-++..++|.++|.+|.
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 9999993 22334 567788889999999999984
No 110
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00027 Score=75.60 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHH
Q 006368 11 APPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90 (648)
Q Consensus 11 ~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~ 90 (648)
.++.=+|.....+ .||-=||-|+|-+|||||..+.| .-|.... |+=.+++-.||. .|..=
T Consensus 188 ~~ev~lP~ae~Gk-Vv~RFPPEpSGyLHIGHAKAALL-----NqYfa~~-~~G~LIvRFDDT-------------NPaKE 247 (712)
T KOG1147|consen 188 NKEVDLPGAEMGK-VVTRFPPEPSGYLHIGHAKAALL-----NQYFAQA-YQGKLIVRFDDT-------------NPAKE 247 (712)
T ss_pred CccccCCccccCc-eEEecCCCCCceeehhhHHHHHH-----HHHHHHh-cCceEEEEecCC-------------Ccchh
Confidence 4555566544444 55666789999999999997543 4444333 344566666763 23444
Q ss_pred HHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEe
Q 006368 91 CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143 (648)
Q Consensus 91 ~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~ 143 (648)
-+++...+.+++..|||.+|.+..|+ .|-+.+...-.+|+..|.+|..+.+
T Consensus 248 ~~eFe~~IleDl~~LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 248 NEEFEDVILEDLSLLGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hHHHHHHHHHHHHHhCcCcceeeech--hhHHHHHHHHHHHHhcCcccccCCc
Confidence 45667789999999999999997777 7889999999999999999866543
No 111
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.54 E-value=0.00046 Score=74.73 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=42.2
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
++++|.|+.+.+..-- -+....+.. .| ..+.+-.| ..+|.|||||.||.|++.+- ..++..++=++++
T Consensus 189 iq~gG~DQ~~ni~~gr-dl~~r~~~~--~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILMGR-DLQRKLEGE--EQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPE---KTSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHHHH-HHHHHhCCC--Cc-eEeccCCccCCCCCccCCCCCCceeccCC---CCCHHHHHHHHHc
Confidence 7889999976543211 111222221 22 22223334 47899999999999999873 4567777777775
No 112
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.51 E-value=0.00066 Score=72.87 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=53.9
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
|.+++ .|+|.+||||..++ + . -+.+.+...|++++|... |-|-.- ...+|.++.+. ...+...|-.+
T Consensus 5 vlSGi-qPTG~lHLGNylGa-i-k-~~v~lq~q~~~~~~~~IA-DlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGA-I-R-PAIAASRQPGVESFYFLA-DYHALI-------KCDDPARIQRS-TLEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCcchHHHHHHH-H-H-HHHHHHHhCCCcEEEEee-chhhcc-------CCCCHHHHHHH-HHHHHHHHHHh
Confidence 45666 78899999997763 3 1 234444445999766543 333221 12345554443 34467788889
Q ss_pred Ccccc---cccCCCchHHHHHHHHHHHH
Q 006368 106 DISFD---NFGRTSTPQQTEACQAIFKK 130 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~~v~~~~~~ 130 (648)
|++++ .|..+.-|+|.+. .+++..
T Consensus 72 GlDPek~~if~QSdvpeh~EL-~wiL~~ 98 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPEL-TWLLTC 98 (431)
T ss_pred CCCccceEEEECCcchhHHHH-HHHHHh
Confidence 99986 4666666776443 444333
No 113
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.43 E-value=0.002 Score=66.16 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..++..-- -+....+ ..+.|..+. +-.|. ++|.|||||.+|.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l~r-dla~r~n-~~~~p~~l~-~p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLGR-ELARRFN-GFTIAEGLT-IPLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHHH-HHHHHhC-CCCCCeEEe-eccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 7899999976654311 1111121 112344433 34554 899999999999988765543 46677766665
No 114
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.41 E-value=0.00099 Score=68.68 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=47.8
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006368 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 27 t~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~ 106 (648)
.+++ -|+|.+||||..+++ -.+ ++++..|+++++..+ |.|..-. ...++. -+.++......++.++|
T Consensus 3 ~tG~-~PTG~lHLG~~~~al---~~~-~~lQ~ag~~~~~~Ia-D~ha~t~------~~~~~~-~~~~~~~~~~~~~lA~G 69 (280)
T cd00806 3 LSGI-QPSGSLHLGHYLGAF---RFW-VWLQEAGYELFFFIA-DLHALTV------KQLDPE-ELRQNTRENAKDYLACG 69 (280)
T ss_pred EEee-CCCchhhHHHHHHHH---HHH-HHHHhCCCCEEEEec-chHHHhC------CCCCHH-HHHHHHHHHHHHHHHcC
Confidence 3444 677999999987632 333 444455999877655 3333310 113443 44555666777888899
Q ss_pred cccc---cccCCCchHHH
Q 006368 107 ISFD---NFGRTSTPQQT 121 (648)
Q Consensus 107 i~~D---~f~rT~~~~~~ 121 (648)
+.++ .|..+.-++|.
T Consensus 70 ~dp~k~~i~~qS~~~~~~ 87 (280)
T cd00806 70 LDPEKSTIFFQSDVPEHY 87 (280)
T ss_pred CCcccCEEEEcCCcHHHH
Confidence 9874 23344444443
No 115
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.29 E-value=0.0027 Score=68.91 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=42.1
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.+.. =--+....+.. +-..+.+-.| ..+|+|||||.||.|++.+- ..++..++=++++
T Consensus 191 i~~gG~DQ~~ni~~-grdla~r~~~~---~~~~l~~plL~~~~G~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWGNILS-GRDLQRRYGGK---PQFGLTMPLLTGLDGKKMGKSEGNAVWLDEE---KTSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCCC---CeEEEecCCcCCCCCCcccCCCCCceeCCCC---CCCHHHHHHHHhc
Confidence 78899999754332 11111222211 1112222334 37899999999999999873 4677888878775
No 116
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.06 E-value=0.002 Score=66.18 Aligned_cols=67 Identities=19% Similarity=0.078 Sum_probs=42.1
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..++..-- -+....+. .. ...+.|..| ..+|.|||||.+|.+| ..+. -+++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~~r-d~a~r~~~--~~-~~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITLGR-DLIRKLGY--KK-VVGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHHHH-HHHHHhCC--CC-cEEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHc
Confidence 7899999986654311 11122222 22 234455666 4899999999999997 4433 356777777665
No 117
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.00 E-value=0.014 Score=61.61 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=40.2
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..+. + .-.+++...|. | +++=.|.|.. .. ...++.++. ++......++..+|+
T Consensus 7 sG~-~PTG~~HLGn~l~~-~---~~~~~lQ~~~~-~-~i~IaD~ha~--~~----~~~~~~~i~-~~~~~~~~~~lA~G~ 72 (333)
T PRK12282 7 TGD-RPTGKLHLGHYVGS-L---KNRVALQNEHE-Q-FVLIADQQAL--TD----NAKNPEKIR-RNILEVALDYLAVGI 72 (333)
T ss_pred Eee-CCCCcchHHHHHHH-H---HHHHHHHhCCC-E-EEEEccchhH--hC----CCCCHHHHH-HHHHHHHHHHHHhCc
Confidence 444 56699999997652 2 23335555564 5 4444677732 21 123554444 445556667778888
Q ss_pred ccc
Q 006368 108 SFD 110 (648)
Q Consensus 108 ~~D 110 (648)
.++
T Consensus 73 dp~ 75 (333)
T PRK12282 73 DPA 75 (333)
T ss_pred Chh
Confidence 876
No 118
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=96.99 E-value=0.0065 Score=64.21 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++|.+++ -|+|.+||||+. + .-.++++++ .|+++++..+ |.|..-.- ..++ +-+.++...+..
T Consensus 28 ~~~~~v~~G~-~PTG~lHLG~~~-~---~~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~-~~i~~~~~~~~~ 93 (329)
T PRK08560 28 KEEPKAYIGF-EPSGKIHLGHLL-T---MNKLADLQK-AGFKVTVLLA-DWHAYLND------KGDL-EEIRKVAEYNKK 93 (329)
T ss_pred CCCCEEEEcc-CCCCcchhhhhH-H---HHHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCH-HHHHHHHHHHHH
Confidence 3455566666 777999999954 2 334566554 5998766654 33322110 0233 444555566778
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
++.++|++.+
T Consensus 94 ~~~A~G~dp~ 103 (329)
T PRK08560 94 VFEALGLDPD 103 (329)
T ss_pred HHHHcCCChh
Confidence 8888888765
No 119
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=96.17 E-value=0.037 Score=49.09 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 411 GNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 411 ~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.+.+.|+.++++|..........+.. ....++.++.|+..+......+..+++.++++..++.+.+|+..+|+|++..+
T Consensus 2 ~Ya~aRi~sIl~k~~~~~~~~~~~~~-~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 2 QYAYARISSILRKAEESGINDEYDDD-FLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHCTCTTCCCCHCCH-HHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHcCCCcCCccccchh-hhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45689999999983221111111110 01135578899999999999999999999999999999999999999999875
Q ss_pred h
Q 006368 491 F 491 (648)
Q Consensus 491 p 491 (648)
-
T Consensus 81 I 81 (119)
T PF05746_consen 81 I 81 (119)
T ss_dssp S
T ss_pred c
Confidence 3
No 120
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.034 Score=59.72 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecC--CcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 22 ~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g--~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
-++|+-. =|+| ++||||+.. .-.++|+ ...|++|.++.| |--+|+|.=...+..-.+ .+.+..+.+.+
T Consensus 33 ~~~Y~Gf---DPTa~slHlGhlv~----l~kL~~f-Q~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~-~e~v~~n~~~i 103 (401)
T COG0162 33 LRVYIGF---DPTAPSLHLGHLVP----LMKLRRF-QDAGHKPIVLIGDATAMIGDPSGKSEERKLLT-RETVLENAETI 103 (401)
T ss_pred ceEEEee---CCCCCccchhhHHH----HHHHHHH-HHCCCeEEEEecccceecCCCCCCHHHHhhcc-HHHHHHHHHHH
Confidence 3455432 4567 899999753 3455555 567999988776 445788853333332233 45555665555
Q ss_pred HHHHh
Q 006368 99 KDVYK 103 (648)
Q Consensus 99 ~~~~~ 103 (648)
++.+.
T Consensus 104 ~~ql~ 108 (401)
T COG0162 104 KKQLG 108 (401)
T ss_pred HHHhc
Confidence 55444
No 121
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=95.45 E-value=0.03 Score=43.75 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=24.1
Q ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHH
Q 006368 458 QYLEAM-EKVKLKQGLKTAMSISSEGNA 484 (648)
Q Consensus 458 ~v~~a~-d~~~~~~al~~i~~l~~~~N~ 484 (648)
++.++| |+|+++.|+..|.++++.+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 367899 899999999999999999999
No 122
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.11 E-value=0.19 Score=57.79 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHH-HHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARF-CRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~-~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++.|.+++ -|+|.+||||. ++ . .+..+ ++..|++|+|..+ |-|..- -.+.|....++.. ....+.++
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~-~-aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~ 99 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IF-K-AVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEV 99 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HH-H-HHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHH
Confidence 34455555 67899999992 23 2 22222 2345999877644 111110 1122223333222 22346667
Q ss_pred HhhcCcccc
Q 006368 102 YKWFDISFD 110 (648)
Q Consensus 102 ~~~l~i~~D 110 (648)
|..+|+..+
T Consensus 100 ~lA~GlDpe 108 (682)
T PTZ00348 100 WKAAGMDMD 108 (682)
T ss_pred HHHcCCCcc
Confidence 888888876
No 123
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=94.82 E-value=0.049 Score=41.25 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 459 YLEAM-EKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 459 v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
++++| |+|+++.|+..++++++.+|.+++.
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~ 32 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLLK 32 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhhc
Confidence 56788 8999999999999999999999853
No 124
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.93 E-value=0.32 Score=52.04 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++|.++. -|+|.+||||.. +...++++++ .|+++++..+ |.|.. .. + +.++.+ +.++......
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~----~~~~~~~lQ~-~g~~~~i~Ia-D~ha~--~~---~-~~~~e~-~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM----VFDELKWHQE-FGANVYIPIA-DDEAY--AA---R-GLSWEE-TREWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH----HHHHHHHHHh-cCCCEEEEec-chHHH--hc---C-CCCHHH-HHHHHHHHHH
Confidence 4567777776 677999999954 2444555544 7999866655 44332 11 1 455544 4455555777
Q ss_pred HHhhcCcccc---cccCCCchHHHHHHH
Q 006368 101 VYKWFDISFD---NFGRTSTPQQTEACQ 125 (648)
Q Consensus 101 ~~~~l~i~~D---~f~rT~~~~~~~~v~ 125 (648)
++.++|+.++ .|..+..+.|.+.+.
T Consensus 130 ~~lA~G~Dp~k~~i~~qS~~~~~~~l~~ 157 (368)
T PRK12285 130 DLIALGFDPDKTEIYFQSENIKVYDLAF 157 (368)
T ss_pred HHHHhCCCccceEEEECCchHHHHHHHH
Confidence 8889999986 344445454444433
No 125
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.60 E-value=0.25 Score=54.25 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.+|-=||-|||.+|||||-..-| -==+|++ .|= |.|+-- || ..|..=..+|-..++++..+
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInv-NFgyAk~---~~G-~cyLRf-DD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINV-NFGYAKA---HGG-VCYLRF-DD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCceeeecchhheee-chhhhhh---hCC-eEEEec-CC-------------CCcchhhHHHHHHHHHHHHH
Confidence 56778899999999999975222 1113332 211 222222 22 13444456677889999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||..+=.. |-+..|-+..-++-..|+.+|.+|.
T Consensus 310 LG~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 99876433 4444666777777888999999984
No 126
>PLN02486 aminoacyl-tRNA ligase
Probab=93.39 E-value=0.5 Score=50.81 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++++|.++. -|+| .+||||+. +...++.+++..|..+.++ -+|+ +..+.+ +.+. +-+.++.....
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv----~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~~-~~~~-e~i~~~~~en~ 137 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLI----PFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLWK-NLSV-EESQRLARENA 137 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHH----HHHHHHHHHHhCCCeEEEE-ecCH-----HHHhhc-CCCH-HHHHHHHHHHH
Confidence 4578888887 7888 59999954 3555554444446665555 4454 222333 4564 45556666777
Q ss_pred HHHhhcCcccc-cccCCCchHH
Q 006368 100 DVYKWFDISFD-NFGRTSTPQQ 120 (648)
Q Consensus 100 ~~~~~l~i~~D-~f~rT~~~~~ 120 (648)
..+.++|+.++ .|+.+..+.+
T Consensus 138 ~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 138 KDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred HHHHHhCCCCcceEEEeccHHH
Confidence 88888998886 3444444444
No 127
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=93.32 E-value=1.2 Score=39.48 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhhCCCCCCCCC-CCCCC---C-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 006368 411 GNFINRVLSFIAKPPGQGYGS-IVPDA---N-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (648)
Q Consensus 411 ~N~~~R~~~~~~k~~~~~~~~-~~p~~---~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~y 485 (648)
.+.+.|+.+++++.. .++ .++.. . ..-.++.++.|+..+..+.+.+..++.+.+++.++..+.+|+...|.|
T Consensus 2 qY~~~Ri~nIl~k~~---~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 2 QYAHARICSILRKAG---EAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSF 78 (122)
T ss_pred cHHHHHHHHHHHHHH---hcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 356788888887721 001 11210 0 011245688999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 006368 486 LQESQ 490 (648)
Q Consensus 486 i~~~~ 490 (648)
++..+
T Consensus 79 y~~v~ 83 (122)
T smart00836 79 YNKCR 83 (122)
T ss_pred HccCc
Confidence 98764
No 128
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=0.24 Score=45.88 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh--cCcccccccCCCchHHHHHHHHHHH
Q 006368 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW--FDISFDNFGRTSTPQQTEACQAIFK 129 (648)
Q Consensus 52 ~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~--l~i~~D~f~rT~~~~~~~~v~~~~~ 129 (648)
+||++|+.||++.|.. +.-+..|+..|.++|.-. . ..-.+++++ +|+ .-.|++++ .+...+.++..
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIl---l----TRDr~L~~r~k~g~-~~i~i~~~--s~~~Ql~e~~~ 85 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRIL---L----TRDRELYKRAKLGI-KAILIRSD--SIEEQLAEFLA 85 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEE---E----eccHHHHHHhhccC-ceEEEeCC--CHHHHHHHHHH
Confidence 6999999999999997 455577888887765410 0 011223333 222 23466665 44566667766
Q ss_pred HHHHCC
Q 006368 130 KLLDNN 135 (648)
Q Consensus 130 ~L~~~G 135 (648)
++-.++
T Consensus 86 ~~~l~~ 91 (165)
T COG1656 86 RLGLKP 91 (165)
T ss_pred Hhccch
Confidence 665544
No 129
>COG0073 ARC1 EMAP domain [General function prediction only]
Probab=91.57 E-value=0.063 Score=48.11 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcccCCCCceeEEEecCCC-ccceEEecccc
Q 006368 606 AKTAEQLKKTKISGENGLCSLQSETSSN-EGNQITCNGSL 644 (648)
Q Consensus 606 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~-~~~q~~~~~~~ 644 (648)
.+.++.++++++++|+||+..++|+|.+ +.|||+|.-..
T Consensus 21 l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n 60 (123)
T COG0073 21 LRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPN 60 (123)
T ss_pred eEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCcc
Confidence 3566788899999999999999999875 49999985443
No 130
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=91.26 E-value=0.25 Score=51.38 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=33.4
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCC--cccCceEEeeceee-cCCc-cccccCCc-ccChhhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGEN--WTLMKTISVTEYLN-YESG-KFSKSKGI-GVFGNDA 367 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~--~~~p~~~~~hg~l~-~~G~-KMSKS~gN-~I~~~~~ 367 (648)
+.++|.|+...+..- --+....+.. .+. ...+.+-++. ++|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~-rd~a~k~~~~~~~~~-p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELA-RDLARKFNYKEIFPK-PAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHH-HHHHhhhcccccccC-chheeeccccccCCccccCccCCccEEEEecc
Confidence 789999997654321 1111222211 112 3445555664 8898 99999999 8877653
No 131
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....
Probab=90.93 E-value=0.14 Score=43.61 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHhhhcccCCCCceeEEEecCCCccceEEeccccc
Q 006368 610 EQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLC 645 (648)
Q Consensus 610 ~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~ 645 (648)
+.++++++++++||+..++|+|+++ |||.|+-...
T Consensus 5 ~I~~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~ 39 (95)
T PF01588_consen 5 KILEVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNV 39 (95)
T ss_dssp EEEEEEEETTSSSEEEEEEESSSSE-EEEEESCTTT
T ss_pred EEEEEEECCCCCEEEEEEEEeCCce-EEEEeccccc
Confidence 4567889999999999999998877 9999986543
No 132
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=90.93 E-value=0.71 Score=55.49 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=62.6
Q ss_pred HHHHHHHHHH---HHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCC
Q 006368 122 EACQAIFKKL---LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198 (648)
Q Consensus 122 ~~v~~~~~~L---~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~ 198 (648)
..+++..+.. .+.+-.++-+.....|++|+...+. ..||. ||..-..--.|..||..+.+.+-....|..|
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~--CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPD--CGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcc--cCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 3455555433 2344455666778999999997653 38999 9987544558999999876654445689999
Q ss_pred CCCcEEeeccceeeechhhHHHHHHHH
Q 006368 199 RNAPQIRDTNHLFLDLPALRNKLEEYI 225 (648)
Q Consensus 199 g~~~~~~~~~~~f~~l~~~~~~l~~~~ 225 (648)
|+++. .....=+++..+.....+-+
T Consensus 716 Gtplv--~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 716 DVELT--PYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred CCccc--ccceEEecHHHHHHHHHHHh
Confidence 99886 22333456665544443333
No 133
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.86 E-value=1.1 Score=46.46 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCC-CceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRG-YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G-~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++.|.|++ -|+|.+||||..+. + -.++....+ ++++|. =+|.|-.-+ .+..+.+-...+......+
T Consensus 5 ~~~vlSG~-~PSG~lHLGny~ga-~----~~~v~~q~~~~~~f~~-IaDlha~t~------~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSGI-QPSGKLHLGNYLGA-I----RNWVLLQEEYYECFFF-IADLHAITV------RQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEecC-CCCCCcchhHhHHH-H----HHHHHHhcccCceEEE-EecHHHhhc------CCCChHHHHHHHHHHHHHH
Confidence 45666776 78899999996652 2 344444446 476554 445543221 1222234445555666777
Q ss_pred HhhcCcccc---cccCCCchHHHHHHHHH
Q 006368 102 YKWFDISFD---NFGRTSTPQQTEACQAI 127 (648)
Q Consensus 102 ~~~l~i~~D---~f~rT~~~~~~~~v~~~ 127 (648)
+-++||+++ .|..+.-++|.+...-+
T Consensus 72 ~LA~GiDP~k~~if~QS~v~e~~eLa~~l 100 (314)
T COG0180 72 YLAVGLDPEKSTIFLQSEVPEHAELAWLL 100 (314)
T ss_pred HHHhccCccccEEEEccCchHHHHHHHHH
Confidence 888999997 57888888876665443
No 134
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=88.11 E-value=0.99 Score=41.78 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=60.2
Q ss_pred HHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC----HHHHHHHHHHHHHHHHhhcCcccc-cccCCCchHHHHHHHH
Q 006368 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS----PKEICDKYHVIHKDVYKWFDISFD-NFGRTSTPQQTEACQA 126 (648)
Q Consensus 52 ~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~----~~e~~~~~~~~~~~~~~~l~i~~D-~f~rT~~~~~~~~v~~ 126 (648)
++|++|+.||||.+..+. .+..|...|.++|.- -.++. +......- .++++. ...+...+
T Consensus 12 Lar~LR~lG~Dt~~~~~~--~D~~il~~A~~e~RillTrd~~l~-----------~~~~~~~~~~li~~~--~~~~QL~e 76 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDI--DDDEILELAREEGRILLTRDRDLL-----------KRRRVSGGVILIRSD--DPEEQLRE 76 (147)
T ss_pred HHHHHHHCCCcEEEeCCC--ChHHHHHHhhhCCeEEEECCHHHH-----------HHhhccCCEEEEcCC--CHHHHHHH
Confidence 689999999999999866 446677888777641 12222 22221111 223222 33444445
Q ss_pred HHHHHHHCCCEEEceEeeeeccCcCcccc---cccccccCCCCccccC-CCCCccccccCCCCCc
Q 006368 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLA---DRLVEGTCPFEGCNYE-SARGDQCENCGKLLNA 187 (648)
Q Consensus 127 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~---d~~v~g~cp~~~c~~~-~~~g~~c~~cg~~l~~ 187 (648)
+++.+ |.-......---|+.|+.-|- ...|.+..|. --+. ...--+|+.||+.+-+
T Consensus 77 v~~~~---~l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~--~v~~~~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 77 VLERF---GLKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPP--YVYETYDEFWRCPGCGKIYWE 136 (147)
T ss_pred HHHHc---CCccccCCCCCccCCCCcEeeechhhccccccCc--cccccCCeEEECCCCCCEecc
Confidence 54443 222222222235777777653 2345554443 1110 1113478888887765
No 135
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=86.87 E-value=1.5 Score=40.84 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=30.9
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 454 KYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 454 ~~~~~v~~a~-d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
.+...+.++| |+|+++.|+..|+++++.+|.+++.
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~ 68 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKKE 68 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4457899999 8999999999999999999998853
No 136
>PLN02486 aminoacyl-tRNA ligase
Probab=84.94 E-value=6.6 Score=42.32 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=35.6
Q ss_pred EEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCC--ccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYES--GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 310 ~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G--~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
--+|.|+..++.+- --+....+. ..| .+++|.++ .+.| .|||||.+| .|++.| +++.++=.+.+
T Consensus 223 VPvG~DQd~~~~lt-Rdia~r~~~--~kp-~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 290 (383)
T PLN02486 223 IPCAIDQDPYFRMT-RDVAPRLGY--YKP-ALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINK 290 (383)
T ss_pred eecccchHHHHHHH-HHHHHHhCC--CCc-ceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhc
Confidence 34689987655331 112222232 234 34445555 3666 799999987 687765 34555555443
No 137
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.71 E-value=0.66 Score=49.72 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=33.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEeecee-ecCCccccccC-CcccChhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSK-GIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~-gN~I~~~~ 366 (648)
+-.+|.|+..++.. +-+.+-...|. +.|..++ |-++ -++|.|||||. +|.|.+.|
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf--~~P~~l~-~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGF--IKPSSTY-HKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCC--CCchhHh-hhcccCCCCCcCCCCCCCCeeeccC
Confidence 67799999866533 11222111243 3555443 4466 48999999998 67887654
No 138
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=84.38 E-value=1 Score=48.59 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++..|.+++ =|+|.+|||| + ++..--++.+ ...|++|+++.+ |-|..-. .+.|.++.++ ......+..+
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g-~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~ 133 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--G-ILKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEV 133 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--h-HhHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHH
Confidence 333444555 6779999999 3 3333334443 466999888665 2221100 1122333333 4444556677
Q ss_pred HhhcCcccc
Q 006368 102 YKWFDISFD 110 (648)
Q Consensus 102 ~~~l~i~~D 110 (648)
|..+|+..+
T Consensus 134 ~~A~GlDp~ 142 (383)
T PTZ00126 134 WKAAGMDMD 142 (383)
T ss_pred HHHhCCCcc
Confidence 888888775
No 139
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.84 E-value=0.49 Score=50.77 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=50.1
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 27 t~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
.+++ -|+|.+||||..+ .+ +.|..+. |++++|. =.|.|=.-+ ...++.+ +.++...+...+-++
T Consensus 6 ~sGi-qPSG~~HLGnylG-~i-----k~wv~lq~~~~~~~~-IADlHAlt~------~~~d~~~-ir~~~~~~~a~~lA~ 70 (398)
T PRK12283 6 LSGM-RPTGRLHLGHYHG-VL-----KNWVKLQHEYECFFF-VADWHALTT------HYETPEV-IEKNVWDMVIDWLAA 70 (398)
T ss_pred EEEe-CCCCcchHHHHHH-HH-----HHHHHHhcCCcEEEE-eecHHHHhC------CCCCHHH-HHHHHHHHHHHHHHc
Confidence 3454 6789999999766 23 4555544 8886544 445443211 0124443 344456688899999
Q ss_pred Ccccc---cccCCCchHHHH
Q 006368 106 DISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~ 122 (648)
|+.++ .|..+..++|.+
T Consensus 71 GlDP~k~~if~QS~v~eh~e 90 (398)
T PRK12283 71 GVDPAQATLFIQSKVPEHAE 90 (398)
T ss_pred CCCccceEEEECCCchHHHH
Confidence 99985 567777777743
No 140
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.85 E-value=0.93 Score=48.05 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=39.3
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..+. +. -+++++. +++|+++.+ |-|-.-. ..++. -+..+......++-++|+
T Consensus 6 ~G~-~PTG~lHLG~~~g~-~~--~~~~lQ~--~~~~~~~Ia-D~ha~t~-------~~~~~-~i~~~~~~~~~~~lA~Gl 70 (333)
T PRK00927 6 SGI-QPTGKLHLGNYLGA-IK--NWVELQD--EYECFFCIA-DLHALTV-------PQDPE-ELRENTRELAADYLACGI 70 (333)
T ss_pred Eee-CCCccchHHhHHHH-HH--HHHHHHh--cCCeEEEEe-cHHHHhC-------CCCHH-HHHHHHHHHHHHHHeEcc
Confidence 444 67799999998863 32 2444443 488877764 2222111 12333 334445557777778888
Q ss_pred ccc
Q 006368 108 SFD 110 (648)
Q Consensus 108 ~~D 110 (648)
.++
T Consensus 71 Dp~ 73 (333)
T PRK00927 71 DPE 73 (333)
T ss_pred Chh
Confidence 775
No 141
>PLN02886 aminoacyl-tRNA ligase
Probab=82.84 E-value=5.3 Score=42.97 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=51.2
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
|.+++ -|+|.+||||..++ + .-+.++++ |++++| +=.|-|-.-+ ..++.++- ++...+...|-.+
T Consensus 49 v~sGi-qPSG~lHLGnylGa-i--~~~v~lQ~--~~~~~~-~IADlHAlt~-------~~~~~~lr-~~~~~~~a~~lA~ 113 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGA-I--KNWVALQE--TYDTFF-CVVDLHAITL-------PHDPRELG-KATRSTAAIYLAC 113 (389)
T ss_pred EEEEE-CCCCccHHHHHHHH-H--HHHHHHhc--cCCEEE-EEecHHHhhC-------CCCHHHHH-HHHHHHHHHHHHc
Confidence 34555 67799999997763 3 23333433 888754 4455554421 22555443 4445577888999
Q ss_pred Ccccc---cccCCCchHHHHH
Q 006368 106 DISFD---NFGRTSTPQQTEA 123 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~~ 123 (648)
|++++ .|..+..++|.+.
T Consensus 114 GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 114 GIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred CcCccceEEEEeCCCchhHHH
Confidence 99986 4667777777544
No 142
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=82.63 E-value=3.4 Score=44.57 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=37.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-c-CC-ccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ES-GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~-~G-~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+..+|..- --+....|.. .+..++.|..|. + +| .|||||.+| .|.+.| +++.+|=-+.+
T Consensus 213 ivpvG~DQ~~~~~La-Rdia~~~~~~--~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D------spe~I~kKI~k 282 (383)
T PTZ00126 213 ICQLGMDQRKVNMLA-REYCDKKKIK--KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED------SEEDVNRKIKK 282 (383)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCCC--CCceeecccccccCCCCCCCCCcCCCCCeecCCC------CHHHHHHHHHh
Confidence 567999998777541 2222333421 122344456663 5 45 799999987 576654 24455554443
No 143
>PRK04023 DNA polymerase II large subunit; Validated
Probab=82.38 E-value=2.6 Score=49.71 Aligned_cols=78 Identities=22% Similarity=0.514 Sum_probs=53.4
Q ss_pred CCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeee
Q 006368 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLD 213 (648)
Q Consensus 134 ~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~ 213 (648)
+|.+ +-.....+|++|+... ..-.||. ||.....-..|..||....+ ..|..||.++. .....=++
T Consensus 617 ~g~~-eVEVg~RfCpsCG~~t----~~frCP~--CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~--~~s~~~i~ 682 (1121)
T PRK04023 617 KGTI-EVEIGRRKCPSCGKET----FYRRCPF--CGTHTEPVYRCPRCGIEVEE-----DECEKCGREPT--PYSKRKID 682 (1121)
T ss_pred CCce-eecccCccCCCCCCcC----CcccCCC--CCCCCCcceeCccccCcCCC-----CcCCCCCCCCC--ccceEEec
Confidence 5665 3345557999999875 3458999 99876667799999987655 45999998875 33333456
Q ss_pred chhhHHHHHHHH
Q 006368 214 LPALRNKLEEYI 225 (648)
Q Consensus 214 l~~~~~~l~~~~ 225 (648)
+..+.....+-+
T Consensus 683 l~~~~~~A~~~l 694 (1121)
T PRK04023 683 LKELYDRALENL 694 (1121)
T ss_pred HHHHHHHHHHHh
Confidence 655544443433
No 144
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=81.52 E-value=5.9 Score=42.71 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=26.9
Q ss_pred ccCceEEe-eceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 336 TLMKTISV-TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 336 ~~p~~~~~-hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.|..++. +.++. ++|+|||||.+|.|.+.| +++.+|=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 45555443 34553 799999999999887654 24555555443
No 145
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.45 E-value=0.67 Score=48.12 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred cccCceEEee-ceee-cCC-ccccccCCc-ccChh
Q 006368 335 WTLMKTISVT-EYLN-YES-GKFSKSKGI-GVFGN 365 (648)
Q Consensus 335 ~~~p~~~~~h-g~l~-~~G-~KMSKS~gN-~I~~~ 365 (648)
+++|..++.- .++. ++| +|||||.+| +|...
T Consensus 177 f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 177 FPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred cCCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 3455444333 3664 788 899999999 77544
No 146
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=80.54 E-value=1.8 Score=46.62 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 24 ILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 24 ~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
+.|.+++ -|+| .+||||+.. .-.+++++ ..|++|.++.|
T Consensus 31 ~~vy~G~-dPTg~~lHlGh~v~----l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 31 IKLYVGF-DPTAPSLHLGHLVP----LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred CEEEEee-CCCCCCccHHHHHH----HHHHHHHH-HCCCcEEEEEe
Confidence 3444555 6778 899999663 33455554 57999988765
No 147
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=78.59 E-value=3.3 Score=43.01 Aligned_cols=75 Identities=8% Similarity=0.123 Sum_probs=42.2
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc--cchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE--YGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~--~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++.|.+++ -|+|.+||||+.. -..+.+.++ .|++|.++.|-.+ .|.+. +.+ .+-.........
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~----~~~~~~lq~-~g~~~~i~iaD~~a~~~~~~-------~~~-~~~~~~~~~~~~ 69 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVP----IMKLIWLQK-AGFKVIILIADLHALLGDPS-------KGD-ERKIRSRAEYNI 69 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHH----HHHHHHHHH-TTSEEEEEEEHHHHHHTTTT-------GSS-HHHHHHHHHHHH
T ss_pred CCcEEEEeE-CCCCcccchHHHH----HHHHHHHHh-cCCccceEecchhhcccCcc-------ccc-HHHHHHHHHHHH
Confidence 455666666 6779999998753 334555444 8999988876322 12221 111 233333344444
Q ss_pred HH--HhhcCcccc
Q 006368 100 DV--YKWFDISFD 110 (648)
Q Consensus 100 ~~--~~~l~i~~D 110 (648)
+. +-++|+..+
T Consensus 70 ~~~~~la~g~d~~ 82 (292)
T PF00579_consen 70 NDKAILALGLDPE 82 (292)
T ss_dssp HHHHHHHTTSHTT
T ss_pred HHHHHHHhccCcc
Confidence 44 678888874
No 148
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=78.27 E-value=30 Score=40.24 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 006368 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (648)
Q Consensus 405 ~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~ 484 (648)
+-...+...+.|+..++.+... ...+.+. ...-..+.|+.|.+.+..+...+..++..-++..++..+..|....+.
T Consensus 566 ~~~~~l~~~~kRv~NIl~k~~~-~~~~~v~--~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 642 (682)
T PRK01233 566 PEFKALAAANKRVSNILKKAEG-KVSGEVD--PALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDA 642 (682)
T ss_pred hhHHHHHHHHHHHHHHHhcccc-ccCCccC--hhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHH
Confidence 3456677778999999887211 0111111 112335678999999999988888888888999999999999999999
Q ss_pred HHHhh
Q 006368 485 YLQES 489 (648)
Q Consensus 485 yi~~~ 489 (648)
|++..
T Consensus 643 FFD~V 647 (682)
T PRK01233 643 FFDNV 647 (682)
T ss_pred HhCCC
Confidence 99884
No 149
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=78.07 E-value=0.83 Score=39.10 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=28.0
Q ss_pred HHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 610 EQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 610 ~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
+.++.+++++++||+.+++|.|.+..+||.++=
T Consensus 5 ~I~~~~~~p~~~kL~~~~vd~G~~~~~~ivsg~ 37 (99)
T cd02153 5 KIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGA 37 (99)
T ss_pred EEEEEEECCCCCCCEEEEEEeCCCcEEEEEeCC
Confidence 445678899999999999999877899998763
No 150
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.00 E-value=5 Score=42.52 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=33.0
Q ss_pred EEEEeccccchhHhH---HHHHhhhcCCCcccCceEEee--cee-ecCCc--cccccCC---cccChhh
Q 006368 309 YQFMGKDNVPFHTVM---FPSTLLGTGENWTLMKTISVT--EYL-NYESG--KFSKSKG---IGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~---~pa~l~a~g~~~~~p~~~~~h--g~l-~~~G~--KMSKS~g---N~I~~~~ 366 (648)
+-.+|.|+..++..- -+-+-.-.|.-++.|..++.. ..| -++|. |||||.+ |.|.+.|
T Consensus 141 ivpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred EEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 678999998766431 111111111112355555432 233 37776 9999999 8887654
No 151
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=77.43 E-value=0.81 Score=39.69 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 609 AEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 609 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
++.++.++++.++||+.+++|.|.++.+||.++
T Consensus 11 g~I~~~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg 43 (105)
T cd02799 11 GKILKVRKHPDADSLYVEEIDLGEEEPRTIVSG 43 (105)
T ss_pred EEEEEEEecCCCCccEEEEEEeCCCcEEEEEcC
Confidence 345667889999999999999987789998765
No 152
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=75.03 E-value=2 Score=26.22 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=4.1
Q ss_pred ccccccCC
Q 006368 176 DQCENCGK 183 (648)
Q Consensus 176 ~~c~~cg~ 183 (648)
.+|.+||.
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 45555554
No 153
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=75.01 E-value=35 Score=39.25 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=75.5
Q ss_pred CCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 006368 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (648)
Q Consensus 371 ~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~ 450 (648)
+|..|.++=.|......--|+..+-+.+.+..+.+-...+-..++|+..++.+... ...+.+.. ..-..+.|+.|.+
T Consensus 541 g~~~dii~AVL~~~~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~-~~~~~v~~--~Lf~~~~E~~L~~ 617 (691)
T COG0751 541 GYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEK-KLSGTVDP--SLFEEDAEKALFE 617 (691)
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhccc-ccCCccCh--HHhcCHHHHHHHH
Confidence 45666666555542211123333334444433333445566778999999887221 11122211 1234567889999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 451 ~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
.+..+...+.+++..-++..|+..+.+|..-...|++..
T Consensus 618 a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~V 656 (691)
T COG0751 618 ALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNV 656 (691)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCc
Confidence 999999999999999999999999999998899999874
No 154
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=74.75 E-value=40 Score=39.33 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCCchhHHHHHhhcCCC-CCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 006368 371 NIPVEVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLA 449 (648)
Q Consensus 371 ~~~~d~lR~~ll~~~~~-~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~ 449 (648)
+++.|.++-.+.. .+. -.|+.-.-+.+.+.....-...+...+.|+..++.+... .+.+.+ ....-.++.|+.|.
T Consensus 542 g~~~dvi~AVl~~-~~~~~~~~~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~-~~~~~v--~~~l~~~~~E~~L~ 617 (691)
T TIGR00211 542 GIDVDVIQAVLAR-RETDPADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNP-VLSSEI--QANLFKEPKEKALF 617 (691)
T ss_pred CCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccc-cccCcc--ChhHcCCHHHHHHH
Confidence 4666666655542 110 011111222233333334466777888999999887211 011111 11123356788999
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 450 EKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 450 ~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
+.+..+...+...+.+-++..++..+.+|....|.|++..
T Consensus 618 ~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~V 657 (691)
T TIGR00211 618 EAVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSV 657 (691)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCC
Confidence 9999888888888877799999999999999999999885
No 155
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=74.70 E-value=5.9 Score=34.68 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=41.1
Q ss_pred ccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechh-hHHHHHHHHHcCCC-------CCCCChHHHHHHHHHHh
Q 006368 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPA-LRNKLEEYINNMSV-------AGSWSQNAIQATHAWLK 247 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~-~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~l~ 247 (648)
|+.||..+..+. .+|..|++.++=.=+-.||..|++ -.+.++.|+..... +...-+.+++++.+.+.
T Consensus 1 CPvCg~~l~vt~---l~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~rGnlKe~e~~lgiSYPTvR~rLd~ii~ 75 (113)
T PF09862_consen 1 CPVCGGELVVTR---LKCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKNRGNLKEMEKELGISYPTVRNRLDKIIE 75 (113)
T ss_pred CCCCCCceEEEE---EEcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHhcCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 455666554444 468889999987777889999875 34556666654321 22334455555555554
No 156
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=72.99 E-value=5 Score=37.61 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=26.4
Q ss_pred CccccccCCCCCcccc--CCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHH
Q 006368 175 GDQCENCGKLLNATDL--KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (648)
Q Consensus 175 g~~c~~cg~~l~~~el--~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (648)
+-.|+.|+.-++..|- -+-.|+.||.+.+ +++-+...+.|.+-++
T Consensus 109 ~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~-------~~dn~~~i~~l~~~i~ 155 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAMELNFTCPRCGAMLD-------YLDNSEAIEKLEEQIK 155 (158)
T ss_pred eEECCCCCcEeeHHHHHHcCCcCCCCCCEee-------eccCHHHHHHHHHHHH
Confidence 3456666655443332 2457888888876 5566666666655554
No 157
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=72.85 E-value=6.4 Score=42.45 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.1
Q ss_pred ecCCccccccCCcccChhh
Q 006368 348 NYESGKFSKSKGIGVFGND 366 (648)
Q Consensus 348 ~~~G~KMSKS~gN~I~~~~ 366 (648)
..+|.|||||.||.||..+
T Consensus 216 ~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 216 PADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCCCCCccCCCCCcccCCc
Confidence 3679999999999988764
No 158
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=71.85 E-value=2.5 Score=26.54 Aligned_cols=19 Identities=42% Similarity=1.064 Sum_probs=8.5
Q ss_pred CCCCccccC-CCCCccccccCC
Q 006368 163 CPFEGCNYE-SARGDQCENCGK 183 (648)
Q Consensus 163 cp~~~c~~~-~~~g~~c~~cg~ 183 (648)
||. ||.. +.....|.+||.
T Consensus 5 Cp~--Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 5 CPN--CGAEIDPDAKFCPNCGA 24 (26)
T ss_pred Ccc--cCCcCCcccccChhhCC
Confidence 444 5443 223345555554
No 159
>PF12773 DZR: Double zinc ribbon
Probab=71.50 E-value=4 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.556 Sum_probs=21.8
Q ss_pred cccC-CCCCccccccCCCCCccccCCCcCCCCCCCc
Q 006368 168 CNYE-SARGDQCENCGKLLNATDLKDPKCKVCRNAP 202 (648)
Q Consensus 168 c~~~-~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~ 202 (648)
|+.. +.....|..||..|...+....+|..||.++
T Consensus 4 Cg~~~~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 4 CGTPNPDDAKFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred cCCcCCccccCChhhcCChhhccCCCCCCcCCcCCC
Confidence 5554 3345678888877764444455677777764
No 160
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.85 E-value=1.3 Score=48.19 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 006368 221 LEEYINNMSVAGSWSQNAIQATHAWLKE 248 (648)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (648)
-.+|.++|..+...|+.+..++.+++.+
T Consensus 132 e~eF~~DM~~LnvLpPtv~tRVSeyvp~ 159 (586)
T KOG2007|consen 132 EEEFLQDMAALNVLPPTVQTRVSEYVPQ 159 (586)
T ss_pred HHHHHHHHHHhCCCCCcccchhhhchHH
Confidence 3488888888888898888888877765
No 161
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=68.99 E-value=1.7 Score=37.51 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 610 EQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 610 ~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
+.++.++++.+++|+.+++|.|.++.+||.++
T Consensus 5 ~I~~~~~hp~~~kL~~~~vd~g~~~~~~Iv~~ 36 (103)
T cd02796 5 KVLEVEPHPNADKLNVCKVDIGENKPLQIVCG 36 (103)
T ss_pred EEEEEEecCCCCceEEEEEEeCCCcEEEEEcC
Confidence 34567889999999999999987789999765
No 162
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=68.73 E-value=7.1 Score=37.34 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCccccccCCCCCccccC--CCcCCCCCCCcEEeeccceeeechhhHHHHHHHHH
Q 006368 174 RGDQCENCGKLLNATDLK--DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (648)
Q Consensus 174 ~g~~c~~cg~~l~~~el~--~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (648)
.+-.|+.||.-++..|-. +-.|..||.+++ +++-++..+.|.+-++
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~-------~~dn~~~~~~l~~~I~ 163 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLE-------EYDNSELIKELKEQIK 163 (178)
T ss_pred CEEECCCCCcEEeHHHHhhcCCcCCCCCCCCe-------ecccHHHHHHHHHHHH
Confidence 355677788766544432 468999999987 3455555555444443
No 163
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=68.73 E-value=9 Score=31.47 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 006368 454 KYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (648)
Q Consensus 454 ~~~~~v~~a~-d~~~~~~al~~i~~l~~~~ 482 (648)
.+.+++.++| |+|+++.|+..+.++++..
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 3457889999 8999999999999999765
No 164
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.
Probab=67.88 E-value=1.5 Score=40.06 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=25.4
Q ss_pred HHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 610 EQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 610 ~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
+.++.+.++.+++|+.+++|.|++ .|||+|.
T Consensus 46 ~I~eve~hp~adkL~v~~Vd~G~~-~~qIvsg 76 (137)
T TIGR00399 46 KILKAERVEKSDKLLKLKLDLGDE-KRQIVSG 76 (137)
T ss_pred EEEEEeecCCCCcceEEEEEeCCc-eEEEEeC
Confidence 456667788999999999999865 5999764
No 165
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=67.68 E-value=59 Score=39.39 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCchhHHHHHhhcCCC-CCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 006368 371 NIPVEVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLA 449 (648)
Q Consensus 371 ~~~~d~lR~~ll~~~~~-~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~ 449 (648)
++..|.++-.+.. .+. --|+.-.-+.+.+..+.+-...+...+.|+..++.+.. +..+ ....-..+.|+.|.
T Consensus 857 G~~~dvI~AVl~~-~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~----~~~v--d~~Lf~~~~E~~L~ 929 (1000)
T PRK14908 857 GFDKDEIAAVLPD-ACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLS----FSVT--DASLLLEPAELNLK 929 (1000)
T ss_pred CCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcC----CCcc--ChhhcCCHHHHHHH
Confidence 5777777766652 211 01222222233333334556677888999999988721 1111 11123356788899
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 006368 450 EKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (648)
Q Consensus 450 ~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~ 489 (648)
+.+..+...+... +-++..++..+.+|..-.+.|++..
T Consensus 930 ~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~V 967 (1000)
T PRK14908 930 QALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEV 967 (1000)
T ss_pred HHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCC
Confidence 8888776666655 4588999999999999999999885
No 166
>TIGR02222 chap_CsaA export-related chaperone CsaA. This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.
Probab=66.48 E-value=1.7 Score=37.79 Aligned_cols=36 Identities=6% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhcccCCCC-ceeEEEecCCC-ccceEEe
Q 006368 605 AAKTAEQLKKTKISGENG-LCSLQSETSSN-EGNQITC 640 (648)
Q Consensus 605 ~~~~~~~~~~~k~~~~~~-l~~~~~~~~~~-~~~q~~~ 640 (648)
..+.++..+.+++++++| |+.+++|+|.+ +.|||..
T Consensus 8 dlrvg~I~~~~~~p~a~k~L~~l~vd~G~~~~~r~ivs 45 (107)
T TIGR02222 8 DLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSA 45 (107)
T ss_pred hheeEEEEEEeecCCcccceeEEEEEecCcCCcceEeh
Confidence 345566777889999998 99999999864 4688764
No 167
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=64.54 E-value=4.1 Score=29.46 Aligned_cols=29 Identities=17% Similarity=0.612 Sum_probs=18.1
Q ss_pred cccccCCCCCccccC-CCcCCCCCCCcEEe
Q 006368 177 QCENCGKLLNATDLK-DPKCKVCRNAPQIR 205 (648)
Q Consensus 177 ~c~~cg~~l~~~el~-~~~~~~~g~~~~~~ 205 (648)
.|.+||..+...+.. ...|..||+++...
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRILFK 34 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeEEEc
Confidence 456677665444332 56788888887643
No 168
>PRK10089 tRNA-binding protein; Provisional
Probab=64.08 E-value=2.1 Score=37.59 Aligned_cols=39 Identities=5% Similarity=-0.037 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEecccc
Q 006368 605 AAKTAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCNGSL 644 (648)
Q Consensus 605 ~~~~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~~~~ 644 (648)
..+.++..+.+++++++|| +.+++|.|.+ +.|||. .|..
T Consensus 13 dlrvg~I~~~~~~p~a~kL~~~l~vd~G~~~~~r~i~-sgl~ 53 (112)
T PRK10089 13 DIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSS-AQIT 53 (112)
T ss_pred heeeEEEEEEEEcCCcCcceEEEEEEecCccCcceEe-hhhc
Confidence 4455567778889999999 9999999876 489997 6643
No 169
>PRK05580 primosome assembly protein PriA; Validated
Probab=62.50 E-value=50 Score=38.71 Aligned_cols=126 Identities=18% Similarity=0.302 Sum_probs=63.1
Q ss_pred HHHHHHHHHCC-CEE-----EceEeeeeccCcCcccccccccccCCCCccccCC-----CCCccccccCCCCCccccCCC
Q 006368 125 QAIFKKLLDNN-WLI-----ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYES-----ARGDQCENCGKLLNATDLKDP 193 (648)
Q Consensus 125 ~~~~~~L~~~G-~iy-----~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~-----~~g~~c~~cg~~l~~~el~~~ 193 (648)
.+..++-.++| .+. ++..+..+|..|+... .||+ |+..- ...-.|..||..... ..
T Consensus 356 ~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~-------~C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~----~~ 422 (679)
T PRK05580 356 LEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVA-------ECPH--CDASLTLHRFQRRLRCHHCGYQEPI----PK 422 (679)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCcc-------CCCC--CCCceeEECCCCeEECCCCcCCCCC----CC
Confidence 33344445555 332 3445567888887654 4887 77642 222368888875432 23
Q ss_pred cCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCC---CCC--ChHHHHHHHHHHhcccccceeeec-cCCCcccCC
Q 006368 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVA---GSW--SQNAIQATHAWLKEGLKVRCITRD-LKWGVPVPL 267 (648)
Q Consensus 194 ~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~---~~~--~~~~~~~~~~~l~~gl~d~~IsR~-~~WGi~vP~ 267 (648)
.|..||+....... +-..+..+.|.+.+.+.+.. ... .....+.+.+.+.+|-.+.-|+-+ ..-|+.+|.
T Consensus 423 ~Cp~Cg~~~l~~~g----~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~ 498 (679)
T PRK05580 423 ACPECGSTDLVPVG----PGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPN 498 (679)
T ss_pred CCCCCcCCeeEEee----ccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCC
Confidence 68888876421000 11233334444333221210 000 112234445556666667666655 556777763
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.30 E-value=53 Score=37.02 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=60.9
Q ss_pred HHHHHHHHHHCC-CEE-----EceEeeeeccCcCcccccccccccCCCCccccCCC-----CCccccccCCCCCccccCC
Q 006368 124 CQAIFKKLLDNN-WLI-----ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESA-----RGDQCENCGKLLNATDLKD 192 (648)
Q Consensus 124 v~~~~~~L~~~G-~iy-----~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~-----~g~~c~~cg~~l~~~el~~ 192 (648)
+.+..++..++| .+. ++..+..+|.+|+... .||+ |+..-. ..-.|..||..... .
T Consensus 187 l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~-------~C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~----~ 253 (505)
T TIGR00595 187 LITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL-------CCPN--CDVSLTYHKKEGKLRCHYCGYQEPI----P 253 (505)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc-------CCCC--CCCceEEecCCCeEEcCCCcCcCCC----C
Confidence 334444444554 332 3444566888887654 4887 765422 23468888865432 3
Q ss_pred CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCC---CCC--ChHHHHHHHHHHhcccccceeeec-cCCCcccC
Q 006368 193 PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVA---GSW--SQNAIQATHAWLKEGLKVRCITRD-LKWGVPVP 266 (648)
Q Consensus 193 ~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~---~~~--~~~~~~~~~~~l~~gl~d~~IsR~-~~WGi~vP 266 (648)
..|..||+.-... .=+-..+..+.|.+.+.+.+.. ... .......+.+.+.+|-.+.-|+-+ ..-|+.+|
T Consensus 254 ~~Cp~C~s~~l~~----~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~ 329 (505)
T TIGR00595 254 KTCPQCGSEDLVY----KGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFP 329 (505)
T ss_pred CCCCCCCCCeeEe----ecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCC
Confidence 4788888753210 0011233334444433221110 000 111123344555666666666544 44566665
No 171
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=61.45 E-value=17 Score=33.23 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=47.9
Q ss_pred chhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCch
Q 006368 39 LGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP 118 (648)
Q Consensus 39 lGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~ 118 (648)
=||-++ +.+++|.++..|++|.+....+. |.|+++.- ..+.-.-++|+ ..+-
T Consensus 23 DgHd~g----akvia~~l~d~GfeVi~~g~~~t---------------p~e~v~aA---~~~dv~vIgvS------sl~g 74 (143)
T COG2185 23 DGHDRG----AKVIARALADAGFEVINLGLFQT---------------PEEAVRAA---VEEDVDVIGVS------SLDG 74 (143)
T ss_pred cccccc----hHHHHHHHHhCCceEEecCCcCC---------------HHHHHHHH---HhcCCCEEEEE------eccc
Confidence 378876 78899999999999988765443 33333221 22232333442 3456
Q ss_pred HHHHHHHHHHHHHHHCCC
Q 006368 119 QQTEACQAIFKKLLDNNW 136 (648)
Q Consensus 119 ~~~~~v~~~~~~L~~~G~ 136 (648)
.|...+..+.+.|.++|.
T Consensus 75 ~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 75 GHLTLVPGLVEALREAGV 92 (143)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 899999999999999886
No 172
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=59.61 E-value=7 Score=45.07 Aligned_cols=10 Identities=10% Similarity=-0.070 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 006368 477 SISSEGNAYL 486 (648)
Q Consensus 477 ~l~~~~N~yi 486 (648)
+.+..+|.-|
T Consensus 460 ~ai~~AN~~I 469 (645)
T PRK14559 460 EAIYLANEAI 469 (645)
T ss_pred HHHHHHHHHH
Confidence 3344445444
No 173
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=57.70 E-value=18 Score=37.56 Aligned_cols=67 Identities=15% Similarity=-0.092 Sum_probs=40.7
Q ss_pred EEEE-eccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhhc
Q 006368 309 YQFM-GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTN 384 (648)
Q Consensus 309 i~~~-GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~ 384 (648)
.|++ |.|++.- +...-.+..++|. +.| .+.+++.+ ..+|+||||+.+. ..+.+ + ++.+. +..|+...
T Consensus 194 ThVvRG~D~l~~-t~~Q~~l~~aLg~--~~P-~y~H~pll~~~~g~kLSKr~~~-~~i~~--~-g~~p~-l~~~l~~l 262 (299)
T PRK05710 194 THVVRGADLLDS-TPRQIYLQQLLGL--PTP-RYLHLPLVLNADGQKLSKQNGA-PALDA--A-GPLPV-LAAALRFL 262 (299)
T ss_pred CEEEeChhhhhc-CHHHHHHHHHcCC--CCC-eEEEeecccCCCCCcccccCCc-cchhh--c-CcCHH-HHHHHHHc
Confidence 4544 6666421 1122234455664 344 56666776 5899999999875 45555 4 78887 77776653
No 174
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.27 E-value=11 Score=38.22 Aligned_cols=46 Identities=11% Similarity=0.256 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~ 71 (648)
.+++||+.|+==--++.+||||+.- ++ +..|+... ++|-+|.-.+|
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliP-Fi----ftKwlQe~-F~vpLVIqlTD 127 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIP-FI----FTKWLQDV-FDVPLVIQLTD 127 (397)
T ss_pred cCCceEEEeCCCCCccccccccchh-HH----HHHHHHHH-hCCceEEEecc
Confidence 3567888887656789999999873 54 77887765 67766655444
No 175
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=54.03 E-value=11 Score=26.70 Aligned_cols=25 Identities=40% Similarity=1.042 Sum_probs=12.7
Q ss_pred cCCCCccccC-----CCCCc-cccccCCCCCcc
Q 006368 162 TCPFEGCNYE-----SARGD-QCENCGKLLNAT 188 (648)
Q Consensus 162 ~cp~~~c~~~-----~~~g~-~c~~cg~~l~~~ 188 (648)
+||. |+.. .+.|+ .|..||.+++..
T Consensus 2 ~Cp~--Cg~~~~~~D~~~g~~vC~~CG~Vl~e~ 32 (43)
T PF08271_consen 2 KCPN--CGSKEIVFDPERGELVCPNCGLVLEEN 32 (43)
T ss_dssp SBTT--TSSSEEEEETTTTEEEETTT-BBEE-T
T ss_pred CCcC--CcCCceEEcCCCCeEECCCCCCEeecc
Confidence 3666 6653 23444 677777766543
No 176
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=52.17 E-value=7.1 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=15.5
Q ss_pred ccccCCCCCccc---cCCCcCCCCCCCcEEe
Q 006368 178 CENCGKLLNATD---LKDPKCKVCRNAPQIR 205 (648)
Q Consensus 178 c~~cg~~l~~~e---l~~~~~~~~g~~~~~~ 205 (648)
|..||+.++..- ..+.+|-.||.+++.|
T Consensus 4 C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 4 CPKCGRIYHIEFNPPKVEGVCDNCGGELVQR 34 (36)
T ss_dssp ETTTTEEEETTTB--SSTTBCTTTTEBEBEE
T ss_pred cCCCCCccccccCCCCCCCccCCCCCeeEeC
Confidence 555665544321 2355677777766554
No 177
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=50.74 E-value=12 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=21.4
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeecc
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~ 208 (648)
.|..||..++.......+|..||+.+.+++-.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~rIlyK~R~ 35 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGYRILYKKRT 35 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCceEEEEeCC
Confidence 36667776665544456788999988765533
No 178
>PRK14529 adenylate kinase; Provisional
Probab=49.70 E-value=44 Score=33.19 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=37.3
Q ss_pred cCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCC
Q 006368 67 CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNN 135 (648)
Q Consensus 67 ~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G 135 (648)
.+-++.|..+..-..+-..-|.+++-............-|+-.|-|.||. ..++.++..|.+.|
T Consensus 40 ~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPRt~-----~Qa~~l~~~l~~~~ 103 (223)
T PRK14529 40 GGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLLDGFPRNK-----VQAEKLWEALQKEG 103 (223)
T ss_pred cCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEEeCCCCCH-----HHHHHHHHHHHhcC
Confidence 34456777777666555666777776653332222223455568888876 44555555566666
No 179
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=49.13 E-value=12 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=26.5
Q ss_pred HHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 609 AEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 609 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
++..+.++++++++|+.+++|.|. +.+||.++
T Consensus 14 g~I~~~~~~p~a~kL~~~~vd~G~-~~~~iv~g 45 (105)
T cd02800 14 GKVLEAERVEGSDKLLKLTVDLGE-EERQIVSG 45 (105)
T ss_pred EEEEEEEecCCCCcceEEEEEeCC-eEEEEEeC
Confidence 355667788999999999999987 78888765
No 180
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=48.76 E-value=15 Score=42.43 Aligned_cols=35 Identities=31% Similarity=0.826 Sum_probs=19.8
Q ss_pred eccCcCcccccccccccCCCCccccCC-CCCccccccCCCCC
Q 006368 146 YCDTCKRFLADRLVEGTCPFEGCNYES-ARGDQCENCGKLLN 186 (648)
Q Consensus 146 y~~~~~~~l~d~~v~g~cp~~~c~~~~-~~g~~c~~cg~~l~ 186 (648)
||..|+.-+.. ..||. ||.+- ....+|++||..+.
T Consensus 17 FC~~CG~~l~~----~~Cp~--CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 17 FCQKCGTSLTH----KPCPQ--CGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cccccCCCCCC----CcCCC--CCCCCCcccccccccCCccc
Confidence 56666665532 35666 66653 23356777776543
No 181
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=48.69 E-value=12 Score=45.64 Aligned_cols=35 Identities=26% Similarity=0.696 Sum_probs=27.4
Q ss_pred cCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcE
Q 006368 162 TCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203 (648)
Q Consensus 162 ~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~ 203 (648)
.||. ||... ....|+.||..+.+. ..|..||..+.
T Consensus 669 kCPk--CG~~t-~~~fCP~CGs~te~v----y~CPsCGaev~ 703 (1337)
T PRK14714 669 RCPS--CGTET-YENRCPDCGTHTEPV----YVCPDCGAEVP 703 (1337)
T ss_pred ECCC--CCCcc-ccccCcccCCcCCCc----eeCccCCCccC
Confidence 5998 99864 445999999987552 38999999765
No 182
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.
Probab=48.30 E-value=8.3 Score=33.54 Aligned_cols=33 Identities=6% Similarity=0.018 Sum_probs=26.9
Q ss_pred HHHHhhhcccCC-CCceeEEEecCCCccceEEec
Q 006368 609 AEQLKKTKISGE-NGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 609 ~~~~~~~k~~~~-~~l~~~~~~~~~~~~~q~~~~ 641 (648)
++..+.++++.+ ++|+.+++|.|.++.|||++.
T Consensus 14 G~V~~~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg 47 (107)
T cd02798 14 GTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQ 47 (107)
T ss_pred EEEEEEEECCCcccceEEEEEEecCccceehhhh
Confidence 345567788899 999999999988788988754
No 183
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.42 E-value=35 Score=30.84 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHH
Q 006368 47 LSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (648)
Q Consensus 47 l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~ 126 (648)
+.+++++++++..||+|...-+...- ..+..+|.+.+- +-++| ...+..|...+..
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~s~-e~~v~aa~e~~a-----------------dii~i------Ssl~~~~~~~~~~ 72 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQTP-EEIARQAVEADV-----------------HVVGV------SSLAGGHLTLVPA 72 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCH-HHHHHHHHHcCC-----------------CEEEE------cCchhhhHHHHHH
Confidence 35899999999999999876553322 123333332221 11222 2344578888899
Q ss_pred HHHHHHHCCC
Q 006368 127 IFKKLLDNNW 136 (648)
Q Consensus 127 ~~~~L~~~G~ 136 (648)
+.+.|.++|.
T Consensus 73 ~~~~L~~~g~ 82 (132)
T TIGR00640 73 LRKELDKLGR 82 (132)
T ss_pred HHHHHHhcCC
Confidence 9999988774
No 184
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=47.35 E-value=6.3 Score=45.87 Aligned_cols=51 Identities=20% Similarity=0.545 Sum_probs=0.0
Q ss_pred EeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcE
Q 006368 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203 (648)
Q Consensus 142 ~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~ 203 (648)
.....|++|+..-. ...||. ||..-..-..|..||..+++. .|.+||.++.
T Consensus 653 i~~r~Cp~Cg~~t~----~~~Cp~--CG~~T~~~~~Cp~C~~~~~~~-----~C~~C~~~~~ 703 (900)
T PF03833_consen 653 IGRRRCPKCGKETF----YNRCPE--CGSHTEPVYVCPDCGIEVEED-----ECPKCGRETT 703 (900)
T ss_dssp --------------------------------------------------------------
T ss_pred eecccCcccCCcch----hhcCcc--cCCccccceeccccccccCcc-----ccccccccCc
Confidence 34467888865422 236888 887766677888888866554 7999998765
No 185
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.07 E-value=13 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=16.1
Q ss_pred cccccCCCCCccccCCCcCCCCCCCc
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~ 202 (648)
+|..||...++.+ .+..|+.||.+-
T Consensus 3 ~C~~CGy~y~~~~-~~~~CP~Cg~~~ 27 (33)
T cd00350 3 VCPVCGYIYDGEE-APWVCPVCGAPK 27 (33)
T ss_pred ECCCCCCEECCCc-CCCcCcCCCCcH
Confidence 4566776666543 456788888754
No 186
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=46.14 E-value=18 Score=37.08 Aligned_cols=66 Identities=17% Similarity=-0.016 Sum_probs=36.3
Q ss_pred EEEE-eccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFM-GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~-GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
.|++ |.|++. .+...-.+..++|. ..| .+.+++.+ ..+|.|+||+.+- ..+.+. -...++..++.+
T Consensus 187 ThViRG~D~l~-~t~~q~~l~~aLg~--~~P-~y~H~pll~~~~g~kLSKR~~~-~~i~~~----~~~~~~~~~l~~ 254 (272)
T TIGR03838 187 THVVRGADLLD-STPRQIYLQRLLGL--PPP-RYLHLPLVVNADGEKLSKQNGA-PALDLS----HPLPALLAALRF 254 (272)
T ss_pred CEEEeCHhhhh-ccHHHHHHHHHhCC--CCC-eEEechhhhCCCCCeeeccCCc-cchhcC----CcHHHHHHHHHH
Confidence 4554 565542 12222234555664 455 56666876 6899999999865 333332 123455555544
No 187
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=45.40 E-value=14 Score=27.16 Aligned_cols=32 Identities=16% Similarity=0.624 Sum_probs=21.4
Q ss_pred ccccccCCCCC-ccccCCCcCCCCCCCcEEeec
Q 006368 176 DQCENCGKLLN-ATDLKDPKCKVCRNAPQIRDT 207 (648)
Q Consensus 176 ~~c~~cg~~l~-~~el~~~~~~~~g~~~~~~~~ 207 (648)
..|-.||+.++ ......-+|..||+.+.++.-
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCcEEEEecc
Confidence 35777888775 334455688899988865543
No 188
>PLN02886 aminoacyl-tRNA ligase
Probab=44.05 E-value=23 Score=38.21 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=29.9
Q ss_pred EEEEeccccchhHhH---HHHHhhhcC------------CCcccCceEEee-c-ee-ec-CC-ccccccCC---cccChh
Q 006368 309 YQFMGKDNVPFHTVM---FPSTLLGTG------------ENWTLMKTISVT-E-YL-NY-ES-GKFSKSKG---IGVFGN 365 (648)
Q Consensus 309 i~~~GkDi~~fH~i~---~pa~l~a~g------------~~~~~p~~~~~h-g-~l-~~-~G-~KMSKS~g---N~I~~~ 365 (648)
+-.+|.|+..+|.+- -+-+-...| ..++.|..++.. + .+ .+ +| .|||||.. |.|.+.
T Consensus 187 ~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~ 266 (389)
T PLN02886 187 LVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLL 266 (389)
T ss_pred eEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEec
Confidence 567899998766431 111111111 113455555432 2 22 34 44 59999985 577654
Q ss_pred h
Q 006368 366 D 366 (648)
Q Consensus 366 ~ 366 (648)
|
T Consensus 267 D 267 (389)
T PLN02886 267 D 267 (389)
T ss_pred C
Confidence 3
No 189
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=41.98 E-value=28 Score=39.72 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHCCCEE
Q 006368 121 TEACQAIFKKLLDNNWLI 138 (648)
Q Consensus 121 ~~~v~~~~~~L~~~G~iy 138 (648)
.+.+.++++...++|.+|
T Consensus 494 ~~al~~lv~~a~~~~~~y 511 (555)
T cd01675 494 PEALEALVKKAAKRGVIY 511 (555)
T ss_pred HHHHHHHHHHHHHcCCce
Confidence 355556666666665555
No 190
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.35 E-value=19 Score=22.66 Aligned_cols=7 Identities=43% Similarity=1.217 Sum_probs=3.1
Q ss_pred cccccCC
Q 006368 177 QCENCGK 183 (648)
Q Consensus 177 ~c~~cg~ 183 (648)
.|+.||.
T Consensus 16 ~Cp~CG~ 22 (26)
T PF10571_consen 16 FCPHCGY 22 (26)
T ss_pred cCCCCCC
Confidence 4444443
No 191
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=41.20 E-value=18 Score=34.31 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=17.4
Q ss_pred HCCCEEEceEeeeeccCcCcccc
Q 006368 133 DNNWLIENTMQQPYCDTCKRFLA 155 (648)
Q Consensus 133 ~~G~iy~~~~~~~y~~~~~~~l~ 155 (648)
+++-.+.+....|||..|+-.+.
T Consensus 3 kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 3 KKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred cccceeecccceeehhhCCCccc
Confidence 34566778888899999887665
No 192
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=38.60 E-value=32 Score=30.43 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=3.7
Q ss_pred cCCCCCCC
Q 006368 194 KCKVCRNA 201 (648)
Q Consensus 194 ~~~~~g~~ 201 (648)
+|+.||++
T Consensus 90 ~CP~Cgs~ 97 (117)
T PRK00564 90 VCEKCHSK 97 (117)
T ss_pred cCcCCCCC
Confidence 35555543
No 193
>PRK12496 hypothetical protein; Provisional
Probab=38.11 E-value=20 Score=33.79 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=0.0
Q ss_pred cccccCCCCCccccCCCcCCCCCCCc
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~ 202 (648)
.|..||+.++... ..-.|+.||+++
T Consensus 129 ~C~gC~~~~~~~~-~~~~C~~CG~~~ 153 (164)
T PRK12496 129 VCKGCKKKYPEDY-PDDVCEICGSPV 153 (164)
T ss_pred ECCCCCccccCCC-CCCcCCCCCChh
No 194
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=36.97 E-value=21 Score=26.21 Aligned_cols=25 Identities=28% Similarity=0.664 Sum_probs=14.9
Q ss_pred cccccCCCCCccccC---CCcCCCCCCC
Q 006368 177 QCENCGKLLNATDLK---DPKCKVCRNA 201 (648)
Q Consensus 177 ~c~~cg~~l~~~el~---~~~~~~~g~~ 201 (648)
+|+.||.++-+.++. ...|..||..
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~ 29 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYE 29 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCe
Confidence 466677776665543 2457777743
No 195
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=35.82 E-value=37 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=14.7
Q ss_pred ccccCCCCCccccCCCcCCCCCCCcEE
Q 006368 178 CENCGKLLNATDLKDPKCKVCRNAPQI 204 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~~~g~~~~~ 204 (648)
|..||..++-.....-+|..||..+.+
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RIly 29 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRILY 29 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SEEB
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeEEE
Confidence 556776654333233478888877653
No 196
>PRK00420 hypothetical protein; Validated
Probab=35.22 E-value=23 Score=31.00 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=4.4
Q ss_pred cCCCCCCCcE
Q 006368 194 KCKVCRNAPQ 203 (648)
Q Consensus 194 ~~~~~g~~~~ 203 (648)
+|..||..+.
T Consensus 42 ~Cp~Cg~~~~ 51 (112)
T PRK00420 42 VCPVHGKVYI 51 (112)
T ss_pred ECCCCCCeee
Confidence 3444444433
No 197
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=34.13 E-value=73 Score=37.41 Aligned_cols=67 Identities=21% Similarity=0.441 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCC---EE---EceEeeeeccCcCcccccccccccCCCCccccC-----CCCCccccccCCCCCcccc
Q 006368 122 EACQAIFKKLLDNNW---LI---ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYE-----SARGDQCENCGKLLNATDL 190 (648)
Q Consensus 122 ~~v~~~~~~L~~~G~---iy---~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~-----~~~g~~c~~cg~~l~~~el 190 (648)
....+.+++-.++|. ++ ++..+...|..|+... .||+ |... ....-.|..||..-.
T Consensus 407 ~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~-------~Cp~--Cd~~lt~H~~~~~L~CH~Cg~~~~---- 473 (730)
T COG1198 407 PALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIA-------ECPN--CDSPLTLHKATGQLRCHYCGYQEP---- 473 (730)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcc-------cCCC--CCcceEEecCCCeeEeCCCCCCCC----
Confidence 334444444455554 22 4445577888887654 5898 8764 345568999998622
Q ss_pred CCCcCCCCCCC
Q 006368 191 KDPKCKVCRNA 201 (648)
Q Consensus 191 ~~~~~~~~g~~ 201 (648)
+--.|..||++
T Consensus 474 ~p~~Cp~Cgs~ 484 (730)
T COG1198 474 IPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCC
Confidence 22479999988
No 198
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.62 E-value=38 Score=31.54 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.8
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCce
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNA 63 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v 63 (648)
.++||||+.=.+. + +.+||+.|.+|..|++-
T Consensus 21 ~~~YP~GDvp~~~--G--VCTDVViRA~R~~g~DL 51 (164)
T PF06940_consen 21 SIGYPNGDVPDNT--G--VCTDVVIRAYRDAGYDL 51 (164)
T ss_pred ecCCCCCCCCCCC--C--ccHHHHHHHHHHcCCCH
Confidence 6789999987764 4 57999999999998875
No 199
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.83 E-value=30 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.755 Sum_probs=12.1
Q ss_pred ccccCCCCCccccCCCcCCCCCCCc
Q 006368 178 CENCGKLLNATDLKDPKCKVCRNAP 202 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~~~g~~~ 202 (648)
|..||...+..+. -..|..||.+.
T Consensus 5 C~~CG~i~~g~~~-p~~CP~Cg~~~ 28 (34)
T cd00729 5 CPVCGYIHEGEEA-PEKCPICGAPK 28 (34)
T ss_pred CCCCCCEeECCcC-CCcCcCCCCch
Confidence 4455554433221 12677777654
No 200
>KOG2241 consensus tRNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.49 E-value=12 Score=37.49 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEecccc
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSL 644 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~ 644 (648)
+..++.+..++++|+.|+--++|+|+.+.||| |.|+-
T Consensus 100 RvG~Ivka~kHpdADsLYve~IdvgE~~PRTV-vSGLv 136 (255)
T KOG2241|consen 100 RVGKIVKAGKHPDADSLYVEEIDVGEAEPRTV-VSGLV 136 (255)
T ss_pred EEeEEEEecccCCcceeEEEEeeeccccccee-ehhhH
Confidence 66788899999999999999999999997776 45543
No 201
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=31.44 E-value=17 Score=43.43 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
.++.++++++++++||...++|+|.++.+||.|+-
T Consensus 48 vg~i~~~~~hp~~~~L~~~~vd~g~~~~~~Iv~ga 82 (798)
T TIGR00472 48 VGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGA 82 (798)
T ss_pred EEEEEEEEecCCCCcEEEEEEEcCCCceEEEEeCC
Confidence 44566778899999999999999877789998853
No 202
>PRK05978 hypothetical protein; Provisional
Probab=31.44 E-value=34 Score=31.62 Aligned_cols=10 Identities=40% Similarity=1.066 Sum_probs=7.2
Q ss_pred cccCCCCccccC
Q 006368 160 EGTCPFEGCNYE 171 (648)
Q Consensus 160 ~g~cp~~~c~~~ 171 (648)
.|.||. ||..
T Consensus 33 ~grCP~--CG~G 42 (148)
T PRK05978 33 RGRCPA--CGEG 42 (148)
T ss_pred cCcCCC--CCCC
Confidence 468888 8764
No 203
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.56 E-value=1.5e+02 Score=30.37 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=48.1
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhC--CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLR--GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~--G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+++ -|.|.+|||+..|+ | -.+.+.+..+ |-.|+| +=.|-|- .-....|.+|. +..-.....+-+.
T Consensus 18 SGI-QPTG~~HLGNYLGa-i--~~Wv~LQ~~~d~~~~~~f-~vvDlHa-------ITvp~dp~~lr-q~~~dm~A~lLAc 84 (347)
T KOG2713|consen 18 SGI-QPTGIPHLGNYLGA-I--KPWVQLQNEYDKNILVLF-SVVDLHA-------ITVPQDPAELR-QATHDMAASLLAC 84 (347)
T ss_pred ecc-CCCCCchhhhhhhh-h--hHHHHHHHHhcCCceEEE-EEeecee-------ecCCCChHHHH-HHHHHHHHHHHHh
Confidence 555 57799999998885 3 4455555444 333333 3344442 12234555443 3333445566677
Q ss_pred Ccccc---cccCCCchHHHHHH
Q 006368 106 DISFD---NFGRTSTPQQTEAC 124 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~~v 124 (648)
||.+. .|....-|.|.+..
T Consensus 85 GIdp~Ks~lF~QS~Vpqh~el~ 106 (347)
T KOG2713|consen 85 GIDPEKSSLFVQSDVPQHAELS 106 (347)
T ss_pred ccCcccceeeeeccchHHHHHH
Confidence 88875 57666667776543
No 204
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.23 E-value=25 Score=30.06 Aligned_cols=32 Identities=25% Similarity=0.642 Sum_probs=20.7
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhh
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPAL 217 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~ 217 (648)
.|+.||+.+-.++ .+|+.|++++.=+ |++++|
T Consensus 8 ~cPvcg~~~iVTe---L~c~~~etTVrg~------F~~s~F 39 (122)
T COG3877 8 RCPVCGRKLIVTE---LKCSNCETTVRGN------FKMSKF 39 (122)
T ss_pred CCCcccccceeEE---EecCCCCceEecc------eecccc
Confidence 4666777554433 5799999988622 566665
No 205
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=30.13 E-value=37 Score=28.66 Aligned_cols=27 Identities=30% Similarity=0.698 Sum_probs=22.6
Q ss_pred ccccccCCCCCccccC--------CCcCCCCCCCc
Q 006368 176 DQCENCGKLLNATDLK--------DPKCKVCRNAP 202 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~--------~~~~~~~g~~~ 202 (648)
..|+.|++.+..-|++ .++|.-|+.++
T Consensus 34 S~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I 68 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPI 68 (92)
T ss_pred CcCcCCCCcCcccccchHHHHHHhCCCCcccCCCC
Confidence 4788999999988875 58899999876
No 206
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=29.17 E-value=30 Score=31.09 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=4.7
Q ss_pred cCCCCCCCcE
Q 006368 194 KCKVCRNAPQ 203 (648)
Q Consensus 194 ~~~~~g~~~~ 203 (648)
+|+.||..++
T Consensus 46 ~CPvC~~~~~ 55 (131)
T COG1645 46 FCPVCGYREV 55 (131)
T ss_pred ECCCCCceEE
Confidence 4555554433
No 207
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.07 E-value=83 Score=36.74 Aligned_cols=64 Identities=17% Similarity=0.430 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCEE-----EceEeeeeccCcCcccccccccccCCCCccccCCCC-----CccccccCCCCCccccCCC
Q 006368 124 CQAIFKKLLDNNWLI-----ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR-----GDQCENCGKLLNATDLKDP 193 (648)
Q Consensus 124 v~~~~~~L~~~G~iy-----~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~-----g~~c~~cg~~l~~~el~~~ 193 (648)
..+..++-.++|.+- ++..+..+|.+|+... .||+ |+..-.+ --.|..||... ...
T Consensus 358 l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~~~-------~C~~--C~~~L~~h~~~~~l~Ch~CG~~~-----~p~ 423 (665)
T PRK14873 358 AFRAARDALEHGPVLVQVPRRGYVPSLACARCRTPA-------RCRH--CTGPLGLPSAGGTPRCRWCGRAA-----PDW 423 (665)
T ss_pred HHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcCee-------ECCC--CCCceeEecCCCeeECCCCcCCC-----cCc
Confidence 334444444566543 4555667899998765 5998 8865332 24699999742 246
Q ss_pred cCCCCCCC
Q 006368 194 KCKVCRNA 201 (648)
Q Consensus 194 ~~~~~g~~ 201 (648)
.|..||++
T Consensus 424 ~Cp~Cgs~ 431 (665)
T PRK14873 424 RCPRCGSD 431 (665)
T ss_pred cCCCCcCC
Confidence 89999986
No 208
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=29.05 E-value=86 Score=32.15 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=40.7
Q ss_pred ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHH-----HHHHHHHHHHhhcCccc--
Q 006368 37 PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICD-----KYHVIHKDVYKWFDISF-- 109 (648)
Q Consensus 37 ~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~-----~~~~~~~~~~~~l~i~~-- 109 (648)
.=+||+..+. .+++-++.+|++|.|++..+.- ......++.|.....+-+ +-...+.+.++..+.+.
T Consensus 12 iG~GHv~Rcl----~LA~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV 85 (279)
T TIGR03590 12 IGLGHVMRCL----TLARALHAQGAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILI 85 (279)
T ss_pred ccccHHHHHH----HHHHHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEE
Confidence 4489998743 4777777889999999887543 223344566653222211 12234666666654332
Q ss_pred -ccc
Q 006368 110 -DNF 112 (648)
Q Consensus 110 -D~f 112 (648)
|.|
T Consensus 86 ~D~y 89 (279)
T TIGR03590 86 VDHY 89 (279)
T ss_pred EcCC
Confidence 555
No 209
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=28.98 E-value=40 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.557 Sum_probs=17.3
Q ss_pred ccccccCCCCCccccCCCcCCCCCCCcEEe
Q 006368 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIR 205 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~~~~~~~~g~~~~~~ 205 (648)
..|..|++.+. .....|+.||+++..+
T Consensus 140 ~rC~GC~~~f~---~~~~~Cp~CG~~~~~~ 166 (177)
T COG1439 140 LRCHGCKRIFP---EPKDFCPICGSPLKRK 166 (177)
T ss_pred EEEecCceecC---CCCCcCCCCCCceEEe
Confidence 46777777665 1234688888886543
No 210
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.38 E-value=37 Score=29.92 Aligned_cols=25 Identities=32% Similarity=0.705 Sum_probs=16.1
Q ss_pred ccccCCCCccccCC------CCCccccccCCCC
Q 006368 159 VEGTCPFEGCNYES------ARGDQCENCGKLL 185 (648)
Q Consensus 159 v~g~cp~~~c~~~~------~~g~~c~~cg~~l 185 (648)
+.|.||+ ||... .-.+.|+.||..+
T Consensus 20 l~grCP~--CGeGrLF~gFLK~~p~C~aCG~dy 50 (126)
T COG5349 20 LRGRCPR--CGEGRLFRGFLKVVPACEACGLDY 50 (126)
T ss_pred hcCCCCC--CCCchhhhhhcccCchhhhccccc
Confidence 4578999 87642 2345677777644
No 211
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=28.33 E-value=44 Score=33.17 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCC
Q 006368 122 EACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201 (648)
Q Consensus 122 ~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~ 201 (648)
+.....-.++..++-+-+....+.=|..|++.+.-.++-+.||+ |+.-.----.|-.|++.+...-|. ..|..||..
T Consensus 116 ktl~~m~ek~~~ql~La~~iRavd~~dva~~v~~~hfLpd~~gn--~r~f~rq~~rc~~c~~k~rr~pl~-g~c~kcg~~ 192 (253)
T COG1933 116 KQLGDMEEKVKRQLDLARRIRAVDEHDVAERVLNSHFIPDLRGN--LRSFTRQEFRCVKCNTKFRRPPLD-GKCPICGGK 192 (253)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHhHHHHHHhhccCCCcchhhh--hhhhhhheeehHhhhhhhcCCCcc-ccccccCCe
Confidence 45555666666777777777777888888888888888888888 765433445677888776654443 578889987
Q ss_pred cE
Q 006368 202 PQ 203 (648)
Q Consensus 202 ~~ 203 (648)
+.
T Consensus 193 ~~ 194 (253)
T COG1933 193 IV 194 (253)
T ss_pred EE
Confidence 65
No 212
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=28.30 E-value=46 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=18.3
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc
Q 006368 33 VNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71 (648)
Q Consensus 33 vng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~ 71 (648)
..+++|.||.+ ++ +..+..+-++...+++|.
T Consensus 7 ~Fdp~H~GH~~--~l------~~a~~~~~~~vv~i~~~~ 37 (66)
T TIGR00125 7 TFDPFHLGHLD--LL------ERAKELFDELIVGVGSDQ 37 (66)
T ss_pred ccCCCCHHHHH--HH------HHHHHhCCEEEEEECchH
Confidence 34889999986 23 222333336666666644
No 213
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=28.22 E-value=36 Score=21.07 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=2.6
Q ss_pred CcCcccc
Q 006368 149 TCKRFLA 155 (648)
Q Consensus 149 ~~~~~l~ 155 (648)
+|..-++
T Consensus 3 sC~~~i~ 9 (24)
T PF07754_consen 3 SCGRPIA 9 (24)
T ss_pred cCCCccc
Confidence 3333333
No 214
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=28.01 E-value=55 Score=26.84 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCcee--------------eecCCcccchHHHHHH------HHcCCCHHHHHHHHHHHH
Q 006368 51 VFARFCRLRGYNAI--------------YICGTDEYGTATETKA------MEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 51 i~~R~~r~~G~~v~--------------~v~g~D~~G~ki~~~A------~~~g~~~~e~~~~~~~~~ 98 (648)
=++.+|+.+||+|. .++|-|..=.-++... ...|++|.|+++....++
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 35778888888874 3444443211111111 245999999998876543
No 215
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=2.9e+02 Score=28.50 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHCCC
Q 006368 118 PQQTEACQAIFKKLLDNNW 136 (648)
Q Consensus 118 ~~~~~~v~~~~~~L~~~G~ 136 (648)
....+...+..-.|+.=|.
T Consensus 68 ~~lrq~~~dm~A~lLAcGI 86 (347)
T KOG2713|consen 68 AELRQATHDMAASLLACGI 86 (347)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3566777777777887776
No 216
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.89 E-value=3.9e+02 Score=28.99 Aligned_cols=106 Identities=15% Similarity=0.260 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCccc---chHHHHHHHHcCC--
Q 006368 11 APPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY---GTATETKAMEDNC-- 85 (648)
Q Consensus 11 ~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~---G~ki~~~A~~~g~-- 85 (648)
.+.++.|..+++.++...++- |. | -+ .+.-=++.|++.+||+|.++|+-+=- =+...+.|.+.++
T Consensus 90 ~~~~~~~~K~kpsVimfVGLq---G~---G--KT--Ttc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 90 GKSALQPKKGKPSVIMFVGLQ---GS---G--KT--TTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred CCcccccccCCCcEEEEEecc---CC---C--cc--eeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 467788988888887776652 22 2 33 23667899999999999999985521 2335566667655
Q ss_pred -------CHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHH
Q 006368 86 -------SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133 (648)
Q Consensus 86 -------~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~ 133 (648)
.|..++.+=.+.|++- .||..+--|+-+|++ -.++|+.|.+
T Consensus 160 ygsyte~dpv~ia~egv~~fKke------~fdvIIvDTSGRh~q-e~sLfeEM~~ 207 (483)
T KOG0780|consen 160 YGSYTEADPVKIASEGVDRFKKE------NFDVIIVDTSGRHKQ-EASLFEEMKQ 207 (483)
T ss_pred EecccccchHHHHHHHHHHHHhc------CCcEEEEeCCCchhh-hHHHHHHHHH
Confidence 4666666666666652 345444445556654 3567777766
No 217
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.14 E-value=34 Score=25.80 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=12.6
Q ss_pred cCCCCCCCcEEeeccc
Q 006368 194 KCKVCRNAPQIRDTNH 209 (648)
Q Consensus 194 ~~~~~g~~~~~~~~~~ 209 (648)
.|..||...++.+...
T Consensus 24 ~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 24 ICDECGAELEVVSLDP 39 (54)
T ss_pred eCCCCCCEEEEEeCCC
Confidence 5888898888877666
No 218
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.71 E-value=1.4e+02 Score=26.27 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHH
Q 006368 47 LSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (648)
Q Consensus 47 l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~ 126 (648)
+..+++++++|..|++|.+.-...... .+...|.+.+- +-+.| ..++..+...+.+
T Consensus 14 lG~~~~~~~l~~~G~~vi~lG~~vp~e-~~~~~a~~~~~-----------------d~V~i------S~~~~~~~~~~~~ 69 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYTGLRQTPE-EIVEAAIQEDV-----------------DVIGL------SSLSGGHMTLFPE 69 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHH-HHHHHHHHcCC-----------------CEEEE------cccchhhHHHHHH
Confidence 457889999999999999876543222 22222222211 11112 2234577778888
Q ss_pred HHHHHHHCCC
Q 006368 127 IFKKLLDNNW 136 (648)
Q Consensus 127 ~~~~L~~~G~ 136 (648)
+.+.|.+.|.
T Consensus 70 ~~~~L~~~~~ 79 (122)
T cd02071 70 VIELLRELGA 79 (122)
T ss_pred HHHHHHhcCC
Confidence 8888888755
No 219
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=25.67 E-value=42 Score=36.39 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=6.5
Q ss_pred EeeeeccCcCccc
Q 006368 142 MQQPYCDTCKRFL 154 (648)
Q Consensus 142 ~~~~y~~~~~~~l 154 (648)
-..|-|..|++.+
T Consensus 128 va~w~c~~cg~~i 140 (593)
T COG2401 128 VALWRCEKCGTII 140 (593)
T ss_pred EEEEecchhchhh
Confidence 4445555555443
No 220
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.50 E-value=58 Score=29.59 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHCCCEEEc-------eEeeeeccCcCcc
Q 006368 118 PQQTEACQAIFKKLLDNNWLIEN-------TMQQPYCDTCKRF 153 (648)
Q Consensus 118 ~~~~~~v~~~~~~L~~~G~iy~~-------~~~~~y~~~~~~~ 153 (648)
..+.+..+..|..+. +|-+.++ .-..|+|..|+..
T Consensus 38 ~V~pe~L~fafe~l~-~gt~~ega~L~i~~~p~~~~C~~CG~~ 79 (135)
T PRK03824 38 DVDKEIVEFALNELL-KGTILEGAEIIFEEEEAVLKCRNCGNE 79 (135)
T ss_pred hhhHHHHHHHHHHHH-cCCcccCCEEEEEecceEEECCCCCCE
Confidence 345666777776654 5555543 2356777777644
No 221
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.08 E-value=45 Score=39.12 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCCCCcccchh----hhhhhhHHHHHHHHHHh-CCCceeeecCCcccch-----HHHHHHHHcCC
Q 006368 31 PYVNNVPHLGN----IIGSVLSADVFARFCRL-RGYNAIYICGTDEYGT-----ATETKAMEDNC 85 (648)
Q Consensus 31 Pyvng~~HlGH----a~~~~l~~Di~~R~~r~-~G~~v~~v~g~D~~G~-----ki~~~A~~~g~ 85 (648)
+++.-.++..+ ..+. -...++..+... .|+.+.++.|++-.|- ..+..+.++|.
T Consensus 183 ~~~~~~~~~~~~~~~~Ln~-~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk 246 (730)
T COG1198 183 PLVVAPPDPSLSEWLALNQ-EQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK 246 (730)
T ss_pred CCcccccccccccccccCH-HHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC
Confidence 33444455555 2332 234555555555 4788888888776664 24445555554
No 222
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=24.38 E-value=82 Score=36.69 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 006368 88 KEICDKYHVIHKDVYK 103 (648)
Q Consensus 88 ~e~~~~~~~~~~~~~~ 103 (648)
...+.++.+..++.+-
T Consensus 528 Es~~~rfak~D~~~fg 543 (656)
T PRK08270 528 EGTTYRLAKEDKKRYP 543 (656)
T ss_pred chHHHHHHHHHHHHcC
Confidence 4466677666665554
No 223
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=23.97 E-value=2.1e+02 Score=30.62 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=61.3
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchH---HHHHHH----HcCCC-------HHHHHHHHHHH
Q 006368 33 VNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTA---TETKAM----EDNCS-------PKEICDKYHVI 97 (648)
Q Consensus 33 vng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~k---i~~~A~----~~g~~-------~~e~~~~~~~~ 97 (648)
.-+++|.||= || ..|.+... |-=|..+.|.+.-|+. +..++- +.+.. +--.+-+|+.-
T Consensus 191 TRNp~HraHE---yl----~K~Al~~vdgllv~plVG~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~aMRyagP 263 (397)
T COG2046 191 TRNPPHRAHE---YL----QKRALEKVDGLLVHPLVGATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAAMRYAGP 263 (397)
T ss_pred cCCCchHHHH---HH----HHHHHHhcCcEEEEeeeccccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHHhhhcCc
Confidence 4588999994 34 34555555 5667778887776664 222221 12221 11222233211
Q ss_pred HHHHH-----hhcCcccccccCCC----chHHHHHHHHHHHHHH-HCCCEEEceEeeeeccCcCccccc
Q 006368 98 HKDVY-----KWFDISFDNFGRTS----TPQQTEACQAIFKKLL-DNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 98 ~~~~~-----~~l~i~~D~f~rT~----~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
-..+| +.+|...-.++|-. +-.---.+|.+|.+.. +-|..-..-...+||+.|+...+.
T Consensus 264 rEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~ 332 (397)
T COG2046 264 REALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVST 332 (397)
T ss_pred HHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeecccccCCccc
Confidence 11111 23444433333321 1111124667777766 666666677788999998888764
No 224
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.36 E-value=52 Score=37.09 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=22.6
Q ss_pred cCCCCccccCCCCCccccccCCCCCccc-cCCCcCCCCCCCc
Q 006368 162 TCPFEGCNYESARGDQCENCGKLLNATD-LKDPKCKVCRNAP 202 (648)
Q Consensus 162 ~cp~~~c~~~~~~g~~c~~cg~~l~~~e-l~~~~~~~~g~~~ 202 (648)
.|.. ||.. -.|+.|+-.|.-.. -....|-.||...
T Consensus 215 ~C~~--Cg~~----~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 215 LCRS--CGYI----LCCPNCDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred Ehhh--CcCc----cCCCCCCCceEEecCCCeEEcCCCcCcC
Confidence 4766 8763 57999997664221 1235788999664
No 225
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.59 E-value=27 Score=33.80 Aligned_cols=79 Identities=15% Similarity=0.403 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEceEeeeeccCc----Cccccccc--ccccCCCCccccCCCCCccccccCCCCCccc---
Q 006368 119 QQTEACQAIFKKLLDNNWLIENTMQQPYCDTC----KRFLADRL--VEGTCPFEGCNYESARGDQCENCGKLLNATD--- 189 (648)
Q Consensus 119 ~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~----~~~l~d~~--v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~e--- 189 (648)
--...++++.+++.+.|..++.++.-...+.+ +.||+..+ --.+|-. |..----|..|..||-.+.-..
T Consensus 134 L~ks~iE~lLqkf~q~gwf~e~eg~ftl~~ralaELe~YL~s~y~dnlk~Cn~--Ch~LvIqg~rCg~c~i~~h~~c~qt 211 (235)
T KOG4718|consen 134 LKKSRIEELLQKFIQMGWFMEVEGRFTLGPRALAELEFYLSSNYADNLKNCNL--CHCLVIQGIRCGSCNIQYHRGCIQT 211 (235)
T ss_pred CCHHHHHHHHHHHHHhchhheecceEEEchHHHHHHHHHHHhhhHHHHHHHhH--hHHHhheeeccCcccchhhhHHHHH
Confidence 35678899999999999999977776555544 33444433 1234554 4443345666777764332111
Q ss_pred -c-CCCcCCCCC
Q 006368 190 -L-KDPKCKVCR 199 (648)
Q Consensus 190 -l-~~~~~~~~g 199 (648)
+ ..+.|+.||
T Consensus 212 y~q~~~~cphc~ 223 (235)
T KOG4718|consen 212 YLQRRDICPHCG 223 (235)
T ss_pred HhcccCcCCchh
Confidence 1 145666665
No 226
>PLN02413 choline-phosphate cytidylyltransferase
Probab=22.40 E-value=1.4e+02 Score=30.78 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=19.1
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCC
Q 006368 33 VNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGT 69 (648)
Q Consensus 33 vng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~ 69 (648)
+.+-+|.||++- | |..+..|-.+.++.|+
T Consensus 35 ~FDLfH~GHir~--L------~qAK~lg~~d~LIVGV 63 (294)
T PLN02413 35 IYDLFHFGHARS--L------EQAKKLFPNTYLLVGC 63 (294)
T ss_pred chhhCCHHHHHH--H------HHHHHhCCCCEEEEEe
Confidence 569999999973 4 2334555445677765
No 227
>PRK03094 hypothetical protein; Provisional
Probab=22.36 E-value=96 Score=25.42 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=27.2
Q ss_pred HHHHHHhCCCceeee--------------cCCcccchHHHHHH------HHcCCCHHHHHHHHHHH
Q 006368 52 FARFCRLRGYNAIYI--------------CGTDEYGTATETKA------MEDNCSPKEICDKYHVI 97 (648)
Q Consensus 52 ~~R~~r~~G~~v~~v--------------~g~D~~G~ki~~~A------~~~g~~~~e~~~~~~~~ 97 (648)
+..+|+.+||+|.-+ +|-|..=.-|+..+ ...|+++.|+++....+
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r 78 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESR 78 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHh
Confidence 788999999999533 22221111111111 24589999999877543
No 228
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.28 E-value=76 Score=27.88 Aligned_cols=16 Identities=19% Similarity=0.733 Sum_probs=9.5
Q ss_pred eEeeeeccCcCccccc
Q 006368 141 TMQQPYCDTCKRFLAD 156 (648)
Q Consensus 141 ~~~~~y~~~~~~~l~d 156 (648)
.-...+|..|+...+.
T Consensus 67 ~p~~~~C~~Cg~~~~~ 82 (114)
T PRK03681 67 QEAECWCETCQQYVTL 82 (114)
T ss_pred eCcEEEcccCCCeeec
Confidence 3445677777665543
No 229
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=22.00 E-value=73 Score=28.29 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred chhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 39 LGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 39 lGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
-||++ +++ .++|.++.+||+|.+.+.
T Consensus 9 ~Ghv~-P~l---ala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 9 RGHVY-PFL---ALARALRRRGHEVRLATP 34 (139)
T ss_dssp HHHHH-HHH---HHHHHHHHTT-EEEEEET
T ss_pred hhHHH-HHH---HHHHHHhccCCeEEEeec
Confidence 58887 454 699999999999996665
No 230
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=21.89 E-value=63 Score=24.74 Aligned_cols=25 Identities=36% Similarity=0.777 Sum_probs=16.8
Q ss_pred eeeccCcCccccc--ccccccCCCCcccc
Q 006368 144 QPYCDTCKRFLAD--RLVEGTCPFEGCNY 170 (648)
Q Consensus 144 ~~y~~~~~~~l~d--~~v~g~cp~~~c~~ 170 (648)
...|.+|+.-++. .++.=-||+ ||.
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPn--CGe 35 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPN--CGE 35 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCC--CCc
Confidence 3578888887733 456667887 763
No 231
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=21.77 E-value=64 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.845 Sum_probs=16.8
Q ss_pred cccccCCCCCccccCC-CcCCCCCCC
Q 006368 177 QCENCGKLLNATDLKD-PKCKVCRNA 201 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~-~~~~~~g~~ 201 (648)
.|-+||-...+..+.. -+|++|.+.
T Consensus 60 ~CkkCGfef~~~~ik~pSRCP~CKSE 85 (97)
T COG3357 60 RCKKCGFEFRDDKIKKPSRCPKCKSE 85 (97)
T ss_pred hhcccCccccccccCCcccCCcchhh
Confidence 5667777777755543 478888764
No 232
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=21.76 E-value=4.1e+02 Score=26.21 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=28.1
Q ss_pred HHHHHHHHH-HHHCCCEEEceEeeeeccCcCcccccccccccCCC
Q 006368 122 EACQAIFKK-LLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 122 ~~v~~~~~~-L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
..+|++|.. .-+-|.--......+||..|+++.+.. +||.
T Consensus 135 ~~a~~i~~~~~~el~I~~v~~~~~~Yc~~~~~~~~~~----~cp~ 175 (215)
T PF01747_consen 135 YEAQEIFDEYAGELGIEPVPFPEMVYCPKCGQYVSAK----TCPH 175 (215)
T ss_dssp THHHHHHHHHHHHCTSEEEE---EEEETTTTEEEECG----GSST
T ss_pred cHHHHHHHcCcccCCceEEecceEEEEcCCCeEeecc----ccCC
Confidence 467788888 566777777778889999999998753 5654
No 233
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=21.74 E-value=76 Score=23.99 Aligned_cols=19 Identities=32% Similarity=0.870 Sum_probs=12.5
Q ss_pred cCCCCccccCCCCCccccccC
Q 006368 162 TCPFEGCNYESARGDQCENCG 182 (648)
Q Consensus 162 ~cp~~~c~~~~~~g~~c~~cg 182 (648)
.||. ||...-....|..||
T Consensus 28 ~c~~--cg~~~~~H~vc~~cG 46 (56)
T PF01783_consen 28 KCPN--CGEPKLPHRVCPSCG 46 (56)
T ss_dssp ESSS--SSSEESTTSBCTTTB
T ss_pred eecc--CCCEecccEeeCCCC
Confidence 4666 766555666777777
No 234
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=21.62 E-value=1.2e+02 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=19.0
Q ss_pred ccc-hHHHHHHHHcCCCHHHHHHHHH
Q 006368 71 EYG-TATETKAMEDNCSPKEICDKYH 95 (648)
Q Consensus 71 ~~G-~ki~~~A~~~g~~~~e~~~~~~ 95 (648)
++| .++..++++.|+++.++..+..
T Consensus 28 CgG~~~L~eA~~~~~ld~~~vl~~L~ 53 (56)
T PF04405_consen 28 CGGNRSLEEACEEKGLDPEEVLEELN 53 (56)
T ss_pred CCCCchHHHHHHHcCCCHHHHHHHHH
Confidence 446 5678888899999998876643
No 235
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.51 E-value=59 Score=38.10 Aligned_cols=35 Identities=20% Similarity=0.570 Sum_probs=23.0
Q ss_pred cCCCCccccCCCCCccccccCCCCCcc-ccCCCcCCCCCCCc
Q 006368 162 TCPFEGCNYESARGDQCENCGKLLNAT-DLKDPKCKVCRNAP 202 (648)
Q Consensus 162 ~cp~~~c~~~~~~g~~c~~cg~~l~~~-el~~~~~~~~g~~~ 202 (648)
.|.. ||.. -.|++|+-.+.-. .-....|-.||...
T Consensus 383 ~C~~--Cg~~----~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 418 (679)
T PRK05580 383 LCRD--CGWV----AECPHCDASLTLHRFQRRLRCHHCGYQE 418 (679)
T ss_pred Ehhh--CcCc----cCCCCCCCceeEECCCCeEECCCCcCCC
Confidence 4666 8753 5799999876432 22335799999764
No 236
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=88 Score=33.50 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=30.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecC--CcccchH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTA 75 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g--~D~~G~k 75 (648)
+.+|.++.--.-..+|+||+.. .+ ++.+++ ..|++++-+.| |--.|+|
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~-lm---~L~hfq-r~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLA-LM---VLIHFQ-RAGHRPIALIGGATASVGDP 112 (467)
T ss_pred CceEEecCCCcHHhhhhcchHH-HH---HHHHHH-HcCCCceEEeccccccccCC
Confidence 3456676655567899999985 33 344544 45898877665 4445655
No 237
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=21.23 E-value=1.1e+02 Score=35.69 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=25.4
Q ss_pred CCcce-EEEEeccccchhHhHHHHHhhhcCCCcccCc
Q 006368 304 ENVEL-YQFMGKDNVPFHTVMFPSTLLGTGENWTLMK 339 (648)
Q Consensus 304 ~~~~~-i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~ 339 (648)
++||| ||+||+|++.+ |+++++.|+++.+|+
T Consensus 251 PGWHiECsam~~~~lg~-----~~DIh~gG~DL~FPH 282 (651)
T PTZ00399 251 PGWHIECSAMASNILGD-----PIDIHSGGIDLKFPH 282 (651)
T ss_pred CCchHHHHHHHHHHcCC-----cceeeccCCCCCCCc
Confidence 34565 99999999987 678899999877786
No 238
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=21.17 E-value=68 Score=29.39 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=20.6
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHh---CCCceeeecCCcc
Q 006368 33 VNNVPHLGNIIGSVLSADVFARFCRL---RGYNAIYICGTDE 71 (648)
Q Consensus 33 vng~~HlGHa~~~~l~~Di~~R~~r~---~G~~v~~v~g~D~ 71 (648)
=-|++||||++. + .-.+...++. .+..|.+.++.|.
T Consensus 40 DFGPlnL~~lyr-f--c~~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 40 DFGPLNLAQLYR-F--CCKLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp ------HHHHHH-H--HHHHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred cCCCccHHHHHH-H--HHHHHHHHcCHHhcCCeEEEECCCCh
Confidence 459999999997 4 4455555655 6899999999776
No 239
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.63 E-value=2.7e+02 Score=26.92 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~ 71 (648)
++.++.+.|+. |..|= +...+++.++|..|++|.++ |.|-
T Consensus 83 ~~~~vv~~t~~----gd~H~-------lG~~~v~~~l~~~G~~vi~L-G~~v 122 (197)
T TIGR02370 83 VLGKVVCGVAE----GDVHD-------IGKNIVVTMLRANGFDVIDL-GRDV 122 (197)
T ss_pred CCCeEEEEeCC----CchhH-------HHHHHHHHHHHhCCcEEEEC-CCCC
Confidence 34566666544 77762 45677888999999999987 5443
No 240
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=20.62 E-value=1e+02 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=25.3
Q ss_pred ccccccCCCCCccccCC----CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHc
Q 006368 176 DQCENCGKLLNATDLKD----PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINN 227 (648)
Q Consensus 176 ~~c~~cg~~l~~~el~~----~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~ 227 (648)
.+|.+||.....-|-+. .+-++.|..+ -|+..+....+..-...
T Consensus 29 ~~c~~c~~~f~~~e~~~~~~i~VIKRDG~~v--------~Fd~~KI~~AI~kA~~a 76 (154)
T PRK00464 29 RECLACGKRFTTFERVELVPLLVIKKDGRRE--------PFDREKLRRGLRRACEK 76 (154)
T ss_pred eeccccCCcceEeEeccCcccEEEecCCcCC--------CcCHHHHHHHHHHHHHh
Confidence 68999999876544222 2333444443 46666666666555444
No 241
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.62 E-value=1.7e+02 Score=26.62 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHH
Q 006368 48 SADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAI 127 (648)
Q Consensus 48 ~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~ 127 (648)
...++++.+|..||+|.+. |.|--=..+..+|.+.+ -+.+++|.= . | .|...+.++
T Consensus 17 Gk~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~-----------------adiVglS~l--~-~---~~~~~~~~~ 72 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETK-----------------ADAILVSSL--Y-G---HGEIDCKGL 72 (134)
T ss_pred hHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcC-----------------CCEEEEecc--c-c---cCHHHHHHH
Confidence 4688999999999999774 44443334444443332 123333221 1 2 345566777
Q ss_pred HHHHHHCCC
Q 006368 128 FKKLLDNNW 136 (648)
Q Consensus 128 ~~~L~~~G~ 136 (648)
.+.|.++|.
T Consensus 73 ~~~l~~~gl 81 (134)
T TIGR01501 73 RQKCDEAGL 81 (134)
T ss_pred HHHHHHCCC
Confidence 888888876
No 242
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=20.62 E-value=75 Score=33.30 Aligned_cols=26 Identities=31% Similarity=0.820 Sum_probs=13.5
Q ss_pred cccCCCCccccC-----CCCC-ccccccCCCCCc
Q 006368 160 EGTCPFEGCNYE-----SARG-DQCENCGKLLNA 187 (648)
Q Consensus 160 ~g~cp~~~c~~~-----~~~g-~~c~~cg~~l~~ 187 (648)
...||. ||.. ...| -.|.+||..+..
T Consensus 11 ~~~Cp~--Cg~~~iv~d~~~Ge~vC~~CG~Vl~e 42 (310)
T PRK00423 11 KLVCPE--CGSDKLIYDYERGEIVCADCGLVIEE 42 (310)
T ss_pred CCcCcC--CCCCCeeEECCCCeEeecccCCcccc
Confidence 346776 7652 1233 256666665543
No 243
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.58 E-value=1.5e+02 Score=27.39 Aligned_cols=27 Identities=33% Similarity=0.735 Sum_probs=15.9
Q ss_pred cccccCCCCCcccc-CCCcCCCCCCCcE
Q 006368 177 QCENCGKLLNATDL-KDPKCKVCRNAPQ 203 (648)
Q Consensus 177 ~c~~cg~~l~~~el-~~~~~~~~g~~~~ 203 (648)
.|++||..+.-..- .=|.|+.||..-.
T Consensus 114 ~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 114 VCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred ecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 67888875322111 1267888887654
No 244
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.49 E-value=1.2e+02 Score=30.65 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhcccCCCCcee
Q 006368 583 VEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISGENGLCS 625 (648)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 625 (648)
+.++.++.+.+++.++++++++++.+.++.+.+.+-.++.||.
T Consensus 151 Ll~ELekIKkER~ee~~~~e~~~~~~~~~~~~~~~~~~NpLl~ 193 (244)
T PF04889_consen 151 LLRELEKIKKERAEEKARKEEEKAEEEEKEREENILSGNPLLN 193 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 4455556666666555555555566667777777888999987
No 245
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.37 E-value=76 Score=24.32 Aligned_cols=36 Identities=36% Similarity=0.665 Sum_probs=20.4
Q ss_pred eeccCcCcccccc--cccccCCCCccccCCCCCccccccCCC
Q 006368 145 PYCDTCKRFLADR--LVEGTCPFEGCNYESARGDQCENCGKL 184 (648)
Q Consensus 145 ~y~~~~~~~l~d~--~v~g~cp~~~c~~~~~~g~~c~~cg~~ 184 (648)
..|.+|..-+++. .++=.||+ ||.. .-..|..|.+.
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CPn--CG~~--~I~RC~~CRk~ 45 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCPN--CGEV--IIYRCEKCRKQ 45 (59)
T ss_pred ccccCCCCcccCCCccCEeeCCC--CCCe--eEeechhHHhc
Confidence 4677877777643 34456776 6542 12336666553
No 246
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.35 E-value=1.5e+02 Score=26.94 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=9.7
Q ss_pred CcCCCCCCC-cEEeecccee
Q 006368 193 PKCKVCRNA-PQIRDTNHLF 211 (648)
Q Consensus 193 ~~~~~~g~~-~~~~~~~~~f 211 (648)
..|+.||+. +....-+..+
T Consensus 108 ~~CP~Cgs~~~~i~~G~el~ 127 (135)
T PRK03824 108 LKCPKCGSRDFEIVKGRGVY 127 (135)
T ss_pred cCCcCCCCCCcEEecCceEE
Confidence 347777764 3334434333
No 247
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=20.09 E-value=1e+02 Score=35.56 Aligned_cols=8 Identities=38% Similarity=1.020 Sum_probs=4.3
Q ss_pred CcCCCCCC
Q 006368 193 PKCKVCRN 200 (648)
Q Consensus 193 ~~~~~~g~ 200 (648)
..|+.||+
T Consensus 573 ~~CP~CG~ 580 (618)
T PRK14704 573 NECPSCGN 580 (618)
T ss_pred ccCcCCCC
Confidence 45556664
No 248
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=20.05 E-value=89 Score=27.42 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=6.3
Q ss_pred EeeeeccCcCcc
Q 006368 142 MQQPYCDTCKRF 153 (648)
Q Consensus 142 ~~~~y~~~~~~~ 153 (648)
-...+|..|+..
T Consensus 68 p~~~~C~~Cg~~ 79 (113)
T PRK12380 68 PAQAWCWDCSQV 79 (113)
T ss_pred CcEEEcccCCCE
Confidence 344566666543
Done!