Query 006368
Match_columns 648
No_of_seqs 331 out of 2396
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqg_A Methionyl-tRNA syntheta 100.0 7E-122 2E-126 1056.6 55.4 592 22-641 2-662 (722)
2 3h99_A Methionyl-tRNA syntheta 100.0 1E-109 4E-114 936.8 44.5 535 17-588 13-557 (560)
3 3u1f_A Methionyl-tRNA syntheta 100.0 7E-108 2E-112 921.1 42.3 519 18-584 5-540 (542)
4 3kfl_A Methionyl-tRNA syntheta 100.0 6E-107 2E-111 912.0 42.3 521 19-589 23-561 (564)
5 4dlp_A Aminoacyl-tRNA syntheta 100.0 2E-101 5E-106 865.8 42.0 515 13-583 15-534 (536)
6 2x1l_A Methionyl-tRNA syntheta 100.0 1.6E-95 6E-100 816.5 41.1 504 19-580 9-523 (524)
7 2d5b_A Methionyl-tRNA syntheta 100.0 1E-93 3.5E-98 798.2 38.7 493 21-578 2-500 (500)
8 2csx_A Methionyl-tRNA syntheta 100.0 4.8E-93 1.7E-97 791.5 35.1 489 21-580 4-497 (497)
9 1ile_A Ilers, isoleucyl-tRNA s 100.0 1.5E-81 5.1E-86 734.5 31.6 496 19-537 35-771 (821)
10 1gax_A Valrs, valyl-tRNA synth 100.0 7.1E-80 2.4E-84 715.8 42.6 486 19-536 31-695 (862)
11 1ffy_A Isoleucyl-tRNA syntheta 100.0 3.6E-78 1.2E-82 707.5 43.2 494 19-537 45-773 (917)
12 1wkb_A Leucyl-tRNA synthetase; 100.0 4.3E-75 1.5E-79 680.9 41.8 483 20-536 32-810 (810)
13 1wz2_A Leucyl-tRNA synthetase; 100.0 6.1E-73 2.1E-77 669.9 41.6 482 22-537 34-811 (967)
14 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.9E-71 6.4E-76 648.1 44.4 452 19-536 30-795 (878)
15 4arc_A Leucine--tRNA ligase; l 100.0 7.1E-72 2.4E-76 646.2 40.1 461 12-538 41-799 (880)
16 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.2E-58 7.5E-63 503.5 25.9 360 7-488 7-372 (461)
17 3c8z_A Cysteinyl-tRNA syntheta 100.0 1E-57 3.4E-62 493.6 24.2 350 7-484 26-390 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 100.0 4.9E-57 1.7E-61 488.5 19.3 371 7-483 29-416 (501)
19 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.6E-53 5.5E-58 459.6 23.8 361 7-488 10-374 (462)
20 1iq0_A Arginyl-tRNA synthetase 100.0 3.2E-43 1.1E-47 396.0 22.2 373 23-496 104-558 (592)
21 2zue_A Arginyl-tRNA synthetase 100.0 8E-43 2.8E-47 393.6 19.6 376 20-496 117-595 (629)
22 3fnr_A Arginyl-tRNA synthetase 100.0 2.2E-32 7.5E-37 296.7 31.5 339 20-491 28-419 (464)
23 1irx_A Lysyl-tRNA synthetase; 100.0 6.3E-35 2.2E-39 324.7 4.5 273 24-402 21-327 (523)
24 1f7u_A Arginyl-tRNA synthetase 100.0 2.2E-30 7.6E-35 290.0 26.5 341 20-491 141-570 (607)
25 3aii_A Glutamyl-tRNA synthetas 99.7 3.4E-17 1.2E-21 178.3 10.1 94 25-139 97-190 (553)
26 1qtq_A GLNRS, protein (glutami 99.6 1.8E-14 6.1E-19 157.0 18.5 94 25-139 27-121 (553)
27 2hz7_A Glutaminyl-tRNA synthet 99.5 1.2E-13 4.1E-18 156.8 13.0 94 25-139 67-161 (851)
28 2cfo_A Glutamyl-tRNA synthetas 99.5 2.2E-13 7.6E-18 148.4 13.3 90 29-139 6-96 (492)
29 2o5r_A Glutamyl-tRNA synthetas 99.4 1.3E-11 4.3E-16 134.6 18.9 96 23-139 12-116 (481)
30 3al0_C Glutamyl-tRNA(Gln) amid 99.2 7.5E-11 2.6E-15 131.2 15.7 95 23-139 129-232 (592)
31 1nzj_A Hypothetical protein YA 99.2 2.1E-11 7.2E-16 124.6 9.7 93 26-139 7-100 (298)
32 3afh_A Glutamyl-tRNA synthetas 99.2 2.8E-10 9.7E-15 123.7 17.3 94 25-139 26-128 (488)
33 1j09_A Glutamyl-tRNA synthetas 99.2 1.3E-10 4.3E-15 126.0 14.2 90 29-139 6-104 (468)
34 4g6z_A Glutamate-tRNA ligase; 99.1 1.7E-10 5.8E-15 124.7 9.4 92 27-139 28-120 (490)
35 2ja2_A Glutamyl-tRNA synthetas 99.0 7.7E-09 2.6E-13 112.5 16.9 91 28-139 10-109 (498)
36 4gri_A Glutamate--tRNA ligase; 98.6 4.6E-07 1.6E-11 99.6 15.3 93 28-139 28-127 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.1 4.4E-05 1.5E-09 79.0 16.5 66 309-384 173-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 97.7 9E-05 3.1E-09 77.0 10.2 69 309-383 156-229 (340)
39 2dlc_X Tyrosyl-tRNA synthetase 97.7 0.00025 8.7E-09 75.2 12.4 65 309-383 185-252 (394)
40 2zp1_A Tyrosyl-tRNA synthetase 97.5 0.0005 1.7E-08 70.7 10.9 76 23-113 28-103 (314)
41 2cya_A Tyrosyl-tRNA synthetase 97.3 0.00066 2.3E-08 71.2 9.1 74 25-110 37-110 (364)
42 3sz3_A Tryptophanyl-tRNA synth 96.9 0.00059 2E-08 70.7 4.1 80 28-122 11-93 (341)
43 3tzl_A Tryptophanyl-tRNA synth 94.9 0.016 5.4E-07 59.6 3.9 69 309-383 142-216 (322)
44 2ts1_A Tyrosyl-tRNA synthetase 94.8 0.034 1.2E-06 59.0 6.5 68 309-383 188-257 (419)
45 1jil_A Tyrrs, tyrosyl-tRNA syn 94.8 0.041 1.4E-06 58.6 6.9 68 309-383 189-258 (420)
46 2yxn_A Tyrosyl-tRNA synthetase 94.7 0.025 8.4E-07 58.2 5.0 68 309-383 194-262 (322)
47 1h3f_A Tyrosyl-tRNA synthetase 94.6 0.045 1.5E-06 58.4 6.9 65 309-383 190-256 (432)
48 2pid_A Tyrosyl-tRNA synthetase 94.6 0.034 1.2E-06 57.9 5.6 68 309-383 213-281 (356)
49 1gd7_A CSAA protein; oligonucl 94.4 0.013 4.6E-07 49.9 1.7 34 608-641 14-48 (109)
50 3ers_X TRNA-binding protein YG 94.3 0.0058 2E-07 52.9 -0.8 40 607-647 15-54 (118)
51 2jan_A Tyrosyl-tRNA synthetase 94.1 0.049 1.7E-06 58.0 5.7 68 309-383 190-259 (432)
52 1mkh_A Metrs;, C-terminal doma 94.0 0.023 7.8E-07 48.3 2.4 33 609-642 16-48 (107)
53 2cwp_A Metrs related protein; 94.0 0.023 7.9E-07 48.7 2.4 34 608-642 19-52 (112)
54 1yi8_B Tryptophanyl-tRNA synth 93.9 0.05 1.7E-06 56.6 5.2 69 309-383 165-239 (351)
55 1n3l_A Tyrosyl-tRNA synthetase 93.9 0.051 1.7E-06 57.0 5.3 65 309-383 181-247 (372)
56 2el7_A Tryptophanyl-tRNA synth 93.9 0.039 1.3E-06 57.1 4.2 69 309-383 144-219 (337)
57 3jxe_A Tryptophanyl-tRNA synth 93.3 0.13 4.3E-06 54.2 7.1 93 22-127 72-168 (392)
58 1pyb_A Methionyl-tRNA syntheta 93.2 0.032 1.1E-06 47.7 2.0 35 607-642 18-52 (111)
59 1y42_X Tyrosyl-tRNA synthetase 93.2 0.029 9.9E-07 59.2 2.0 41 340-383 279-320 (392)
60 2nzh_A Protein CSAA; beta barr 92.3 0.027 9.3E-07 48.3 0.2 34 608-641 17-52 (113)
61 2q2i_A AGR_C_4014P, secretion 92.1 0.031 1.1E-06 48.2 0.4 34 608-641 20-55 (116)
62 3g48_A Chaperone CSAA; structu 91.8 0.035 1.2E-06 47.5 0.3 34 608-641 17-51 (112)
63 3hv0_A Tryptophanyl-tRNA synth 91.6 0.16 5.3E-06 53.5 5.1 77 22-110 73-150 (393)
64 3prh_A Tryptophanyl-tRNA synth 91.4 0.23 8E-06 52.0 6.2 86 22-123 30-123 (388)
65 1pxf_A Hypothetical protein YG 91.4 0.08 2.8E-06 45.2 2.2 38 608-646 16-53 (111)
66 2q2h_A AGR_C_4014P, secretion 91.3 0.043 1.5E-06 48.3 0.4 35 607-641 34-70 (131)
67 3a04_A Tryptophanyl-tRNA synth 91.2 0.27 9.1E-06 51.4 6.4 77 21-110 68-144 (372)
68 3i05_A Tryptophanyl-tRNA synth 91.0 0.13 4.5E-06 54.1 3.9 77 21-110 76-153 (395)
69 3hzr_A Tryptophanyl-tRNA synth 90.9 0.39 1.3E-05 50.3 7.3 77 21-110 80-156 (386)
70 3bu2_A Putative tRNA-binding p 90.8 0.099 3.4E-06 49.3 2.3 36 605-641 92-127 (199)
71 2yy5_A Tryptophanyl-tRNA synth 90.7 0.16 5.5E-06 52.6 4.1 82 26-122 7-91 (348)
72 1i6k_A TRPRS, tryptophanyl-tRN 90.5 0.18 6.2E-06 51.8 4.2 77 32-122 9-88 (328)
73 1r6u_A Tryptophanyl-tRNA synth 90.4 0.23 8E-06 52.8 5.2 77 21-110 106-183 (437)
74 2ip1_A Tryptophanyl-tRNA synth 90.1 0.2 7E-06 53.3 4.4 77 22-110 101-178 (432)
75 3tze_A Tryptophanyl-tRNA synth 89.5 0.31 1E-05 51.4 5.0 77 21-110 99-176 (406)
76 3hzr_A Tryptophanyl-tRNA synth 89.4 0.28 9.7E-06 51.4 4.7 62 312-383 230-294 (386)
77 3tzl_A Tryptophanyl-tRNA synth 89.4 0.36 1.2E-05 49.4 5.4 78 32-123 11-91 (322)
78 3vgj_A Tyrosyl-tRNA synthetase 89.0 0.29 9.9E-06 51.2 4.5 66 309-383 203-272 (373)
79 3i05_A Tryptophanyl-tRNA synth 89.0 1 3.5E-05 47.3 8.6 54 309-366 227-283 (395)
80 1r6t_A Tryptophanyl-tRNA synth 89.0 0.56 1.9E-05 50.6 6.8 75 21-110 153-230 (477)
81 1r6t_A Tryptophanyl-tRNA synth 88.9 0.35 1.2E-05 52.2 5.2 51 312-366 309-363 (477)
82 1n3l_A Tyrosyl-tRNA synthetase 88.6 0.71 2.4E-05 48.2 7.1 73 25-110 37-113 (372)
83 3foc_A Tryptophanyl-tRNA synth 88.4 1.1 3.6E-05 47.9 8.3 78 21-110 89-167 (451)
84 3hv0_A Tryptophanyl-tRNA synth 87.6 0.93 3.2E-05 47.6 7.2 58 305-366 219-280 (393)
85 2ip1_A Tryptophanyl-tRNA synth 87.6 0.85 2.9E-05 48.5 7.0 54 309-366 252-309 (432)
86 2cyc_A Tyrosyl-tRNA synthetase 87.3 0.62 2.1E-05 48.7 5.7 76 25-110 35-114 (375)
87 1r6u_A Tryptophanyl-tRNA synth 87.1 0.8 2.7E-05 48.7 6.4 51 312-366 262-316 (437)
88 2j5b_A Tyrosyl-tRNA synthetase 86.8 0.46 1.6E-05 49.2 4.3 77 23-110 40-116 (348)
89 3n9i_A Tryptophanyl-tRNA synth 86.7 0.9 3.1E-05 46.8 6.4 79 28-122 20-102 (346)
90 1i6k_A TRPRS, tryptophanyl-tRN 86.5 0.7 2.4E-05 47.4 5.4 69 309-383 140-219 (328)
91 3jxe_A Tryptophanyl-tRNA synth 86.5 0.47 1.6E-05 49.8 4.2 54 309-366 210-267 (392)
92 3vgj_A Tyrosyl-tRNA synthetase 85.7 1.2 4.2E-05 46.4 6.8 75 25-110 58-132 (373)
93 2yy5_A Tryptophanyl-tRNA synth 85.6 0.6 2E-05 48.3 4.4 58 309-366 150-218 (348)
94 2cyc_A Tyrosyl-tRNA synthetase 85.3 0.58 2E-05 48.9 4.2 68 309-383 183-276 (375)
95 3tze_A Tryptophanyl-tRNA synth 85.0 1.8 6.2E-05 45.5 7.7 54 309-366 246-303 (406)
96 2j5b_A Tyrosyl-tRNA synthetase 83.1 2.2 7.5E-05 44.0 7.4 54 309-366 189-246 (348)
97 2e8g_A Hypothetical protein PH 82.4 0.57 1.9E-05 45.3 2.4 33 608-641 140-172 (241)
98 3foc_A Tryptophanyl-tRNA synth 82.0 0.91 3.1E-05 48.4 4.0 52 310-365 291-346 (451)
99 1yi8_B Tryptophanyl-tRNA synth 81.6 1.9 6.3E-05 44.6 6.1 84 25-123 24-111 (351)
100 2el7_A Tryptophanyl-tRNA synth 81.3 1.7 5.9E-05 44.6 5.7 82 32-124 9-94 (337)
101 3p0j_A Tyrosyl-tRNA synthetase 80.3 2.1 7.3E-05 48.2 6.5 77 23-110 40-116 (690)
102 3n9i_A Tryptophanyl-tRNA synth 79.6 1 3.5E-05 46.4 3.3 58 309-366 155-223 (346)
103 2ts1_A Tyrosyl-tRNA synthetase 76.9 1.3 4.5E-05 46.9 3.2 73 25-104 32-107 (419)
104 1jil_A Tyrrs, tyrosyl-tRNA syn 76.8 1.2 4E-05 47.3 2.8 78 24-109 33-113 (420)
105 3prh_A Tryptophanyl-tRNA synth 75.6 1.7 6E-05 45.3 3.7 69 309-383 174-253 (388)
106 1h3f_A Tyrosyl-tRNA synthetase 72.2 4.1 0.00014 43.2 5.6 40 23-68 37-77 (432)
107 2yxn_A Tyrosyl-tRNA synthetase 71.8 2.1 7.1E-05 43.7 3.1 39 24-68 34-73 (322)
108 3p0j_A Tyrosyl-tRNA synthetase 70.5 7.6 0.00026 43.8 7.6 68 33-109 390-458 (690)
109 2pid_A Tyrosyl-tRNA synthetase 70.3 2.3 7.9E-05 44.0 3.1 39 24-68 47-86 (356)
110 3pco_B Phenylalanyl-tRNA synth 70.3 1.8 6.1E-05 49.8 2.5 35 608-642 47-81 (795)
111 1y42_X Tyrosyl-tRNA synthetase 68.5 3.6 0.00012 43.1 4.2 38 25-68 66-104 (392)
112 2jan_A Tyrosyl-tRNA synthetase 67.3 3.3 0.00011 43.9 3.6 38 25-68 34-72 (432)
113 3a04_A Tryptophanyl-tRNA synth 66.5 5.4 0.00018 41.5 5.0 55 309-365 211-269 (372)
114 1lko_A Rubrerythrin all-iron(I 57.5 13 0.00046 34.5 5.5 38 116-153 127-164 (191)
115 1b7y_B Phers, protein (phenyla 48.5 3.6 0.00012 47.2 -0.1 32 608-642 47-78 (785)
116 3dvk_B Voltage-dependent R-typ 47.7 14 0.00048 21.7 2.4 20 38-57 2-21 (23)
117 4ayb_P DNA-directed RNA polyme 44.4 18 0.0006 25.2 2.8 28 177-204 5-35 (48)
118 1twf_L ABC10-alpha, DNA-direct 38.1 12 0.00041 28.7 1.4 28 177-204 30-57 (70)
119 3pwf_A Rubrerythrin; non heme 36.0 12 0.0004 34.3 1.3 23 177-201 140-162 (170)
120 1lko_A Rubrerythrin all-iron(I 35.3 9.8 0.00034 35.4 0.7 25 177-202 157-181 (191)
121 2lcq_A Putative toxin VAPC6; P 34.9 15 0.00052 33.1 1.9 29 174-203 131-159 (165)
122 1e8j_A Rubredoxin; iron-sulfur 31.3 29 0.001 24.8 2.5 10 192-201 36-45 (52)
123 2kdx_A HYPA, hydrogenase/ureas 29.6 38 0.0013 28.6 3.4 35 119-154 41-83 (119)
124 3nw0_A Non-structural maintena 29.2 36 0.0012 32.8 3.5 79 119-201 133-226 (238)
125 6rxn_A Rubredoxin; electron tr 29.2 23 0.0008 24.7 1.6 26 177-202 6-40 (46)
126 3h0g_L DNA-directed RNA polyme 26.2 34 0.0012 25.6 2.1 30 177-206 23-52 (63)
127 1yk4_A Rubredoxin, RD; electro 26.1 26 0.00089 25.1 1.4 10 192-201 35-44 (52)
128 1yuz_A Nigerythrin; rubrythrin 25.7 22 0.00075 33.4 1.2 22 177-201 173-195 (202)
129 2rhq_B Phenylalanyl-tRNA synth 25.6 14 0.00047 42.5 -0.2 30 608-641 47-76 (795)
130 3a43_A HYPD, hydrogenase nicke 25.3 39 0.0013 29.6 2.7 37 177-213 72-129 (139)
131 3c48_A Predicted glycosyltrans 25.0 80 0.0027 32.4 5.7 67 1-71 1-70 (438)
132 2kn9_A Rubredoxin; metalloprot 24.2 30 0.001 27.3 1.5 11 192-202 60-70 (81)
133 1s24_A Rubredoxin 2; electron 23.4 27 0.00092 28.0 1.2 10 192-201 68-77 (87)
134 2v3b_B Rubredoxin 2, rubredoxi 23.1 33 0.0011 24.8 1.5 10 192-201 36-45 (55)
135 3dve_B Voltage-dependent N-typ 23.0 38 0.0013 19.9 1.4 19 38-56 1-19 (23)
136 2kdx_A HYPA, hydrogenase/ureas 22.8 56 0.0019 27.6 3.2 26 177-202 75-100 (119)
137 1ccw_A Protein (glutamate muta 21.8 1E+02 0.0036 26.5 4.9 80 22-136 4-83 (137)
138 1dx8_A Rubredoxin; electron tr 21.8 39 0.0013 25.8 1.7 10 192-201 40-49 (70)
139 4rxn_A Rubredoxin; electron tr 21.6 41 0.0014 24.3 1.7 10 192-201 36-45 (54)
140 2k5e_A Uncharacterized protein 20.0 93 0.0032 23.8 3.6 41 55-97 24-64 (73)
No 1
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=6.9e-122 Score=1056.64 Aligned_cols=592 Identities=36% Similarity=0.698 Sum_probs=498.2
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
++||||+|+|||||.+||||++++++.+|+++||+||+||+|+|++|+|+||+||+.+|+++|++|+++++++++.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998567899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcccccc
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~c 181 (648)
|++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+++|||+.|++||+|++|+|+||. |+.++++|++|+.|
T Consensus 82 ~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~--c~~~~~~Gd~c~~~ 159 (722)
T 1rqg_A 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVC 159 (722)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSS--SCCSCCCTTTCSSS
T ss_pred HHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCc--cCCccCCcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCC
Q 006368 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (648)
Q Consensus 182 g~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~W 261 (648)
|+.+++.+|++|+|++||++++++.++||||+|++|+++|.+|+++++ ||++.++++.+||++|++||||||++.|
T Consensus 160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~----wp~~~~~~~~~wl~~gl~dw~ISR~~~W 235 (722)
T 1rqg_A 160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLNW 235 (722)
T ss_dssp CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCSS
T ss_pred ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHCCCcccceeccccC
Confidence 999999999999999999999999999999999999999999999864 8999999999999999999999999999
Q ss_pred CcccCCc--CCCCceeeeeecccchHHHhccccch------HHHhhcCC-CCCcceEEEEeccccchhHhHHHHHhhhcC
Q 006368 262 GVPVPLE--RFKEKVFYVWFDAPIGYVSITSCYTN------EWEQWWKN-PENVELYQFMGKDNVPFHTVMFPSTLLGTG 332 (648)
Q Consensus 262 Gi~vP~~--~~~~~v~yVWfDa~~~yis~~~~~~~------~~~~~w~~-p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g 332 (648)
|+|+|.+ +.+++++||||||+++|++....|.. +|..||++ +.++..+|++|+||++||+++|||||+++|
T Consensus 236 G~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~ 315 (722)
T 1rqg_A 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYG 315 (722)
T ss_dssp SCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTC
T ss_pred ccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccC
Confidence 9999974 34799999999999999987654532 68899972 235666899999999999999999999987
Q ss_pred C--------CcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhH
Q 006368 333 E--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (648)
Q Consensus 333 ~--------~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~ 404 (648)
. .|++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++..++++|++||++.+.+++|+
T Consensus 316 ~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~ 394 (722)
T 1rqg_A 316 KYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINE 394 (722)
T ss_dssp CBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred CCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHH-hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHH
Confidence 3 367889999999999999999999999999999998 8999999999999889999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 006368 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (648)
Q Consensus 405 ~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~ 484 (648)
+++++++||++|+.+++.+ ++++.+|... ...+.|+++++.+..+.+.+.++|++|+|+.|++.+++|++.+|+
T Consensus 395 ~l~~~l~N~~~R~~~~~~k----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~ 468 (722)
T 1rqg_A 395 ELVNNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468 (722)
T ss_dssp TTTTTHHHHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCCCCcc--cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5666665321 235678999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCC
Q 006368 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPA 564 (648)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 564 (648)
|++..+||.+.++++.++.++++++.++++++++||+||||++|++||++||.+.. .+|.+ ..+++
T Consensus 469 Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~--~~w~~------------~~~~~ 534 (722)
T 1rqg_A 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV--KRWEF------------RELPA 534 (722)
T ss_dssp HHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC--CCSSC------------CCCCT
T ss_pred HHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcc--cCchh------------ccCCC
Confidence 99999999998766677888999999999999999999999999999999997531 12322 12567
Q ss_pred CCccCCCCCCCCCCChHHHHHHHHH----------------hccch---h-HHHH--H--------------H-H-----
Q 006368 565 GHKIGSPNPLFKELKDDEVEFFRSK----------------FAGSQ---A-DRII--R--------------A-E----- 602 (648)
Q Consensus 565 g~~l~~~~~Lf~~i~~~~~~~~~~~----------------~~~~~---~-~~~~--~--------------~-~----- 602 (648)
|++|+++++||+||++++++++.++ +.+.+ + ++++ . . +
T Consensus 535 g~~~~~~~~lf~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (722)
T 1rqg_A 535 GHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGK 614 (722)
T ss_dssp TCBCCCCCCSCCCCCHHHHHHHHHHTTTTTCHHHHHHHHHHHSCHHHHHHHHHHHHGGGTHHHHHHHSSCCC--------
T ss_pred CCCcCCCCCCcCCCCHHHHHHHHhhccccccccccchhhhhhhhhhccchhhcccccccccccccccccccccccccccc
Confidence 9999999999999999888766642 11111 0 0000 0 0 0
Q ss_pred ----------HHHHHHHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 603 ----------AEAAKTAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 603 ----------~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
+-..+++++++++++++|+||+.+|||+|+ +.|||+|.
T Consensus 615 ~~~i~~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g 662 (722)
T 1rqg_A 615 EMYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAG 662 (722)
T ss_dssp -------------------------------------------------
T ss_pred cccccHhHhhhcceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEEC
Confidence 002256789999999999999999999986 68999884
No 2
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1e-109 Score=936.78 Aligned_cols=535 Identities=27% Similarity=0.507 Sum_probs=490.6
Q ss_pred CCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHH
Q 006368 17 PIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHV 96 (648)
Q Consensus 17 ~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~ 96 (648)
|..++++||||+|+|||||++||||+|+ ++.+|+++||+|++||+|.|++|+|+||+||+.+|++.|++|+++++++.+
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 4668889999999999999999999998 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 97 IHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 97 ~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
.|++++++|||++|.|++|+++.|...++++|.+|.++|+||++.+.+|||+.|++||++++|+|+||. |++.+++|+
T Consensus 92 ~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~gd 169 (560)
T 3h99_A 92 EHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTT--TCCSSEETT
T ss_pred HHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCC--CCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceee
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~Is 256 (648)
+|++||+.+++.++++|+|++||++++.+.++||||+|++|+++|.+++++. .|+++.++.+.+|+++++.|||||
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~l~D~~Is 245 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG----ALQEQVANKMQEWFESGLQQWDIS 245 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS----CSCHHHHHHHHHHHHHCCCCEECE
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHhcCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999883 378999999999999999999999
Q ss_pred ecc-CCCcccCCcCCCCceeeeeecccchHHHhccccc------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhh
Q 006368 257 RDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLL 329 (648)
Q Consensus 257 R~~-~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~ 329 (648)
|++ .||+|||.+ +++|+||||||+++|++++..|+ .+|..|||.+.+++++|++|+||++||+++|||+|+
T Consensus 246 R~~~~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~ 323 (560)
T 3h99_A 246 RDAPYFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLE 323 (560)
T ss_dssp EESSCSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHH
T ss_pred ccCCcCCeeCCCC--CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 997 689999987 79999999999999999875553 469999986667888999999999999999999999
Q ss_pred hcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCC-CCccccHHHHHHHhhHHHHH
Q 006368 330 GTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNELLN 408 (648)
Q Consensus 330 a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~-~d~~fs~~~~~~~~n~~l~~ 408 (648)
++|.+ +|+.+++||||+.+|+|||||+||||+|.++++ .||+|++||||++..+.+ +|++|+++.+.+++|+++++
T Consensus 324 ~~g~~--~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~-~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~ 400 (560)
T 3h99_A 324 GSNFR--KPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 400 (560)
T ss_dssp HTTBC--CCSEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCC
T ss_pred hCCCC--CCcEEEEEeEEEeCCeeccccCCCcCCHHHHHH-HcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99974 679999999999999999999999999999999 799999999999988876 89999999999999999999
Q ss_pred HHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Q 006368 409 NLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488 (648)
Q Consensus 409 ~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~ 488 (648)
+++|+++|+.+++.+ ++++.+|.. ..|++|++.+..+++.+.++|++++++.|++.+++|++.+|+|++.
T Consensus 401 ~l~n~~~R~~~~~~~----~~~~~~~~~------~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~ 470 (560)
T 3h99_A 401 KVVNLASRNAGFINK----RFDGVLASE------LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDE 470 (560)
T ss_dssp CCTHHHHTTHHHHHH----HSTTBCCSS------CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hcCCCCCCc------cccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887 566655532 2356899999999999999999999999999999999999999999
Q ss_pred hhhhhhccC--ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCC
Q 006368 489 SQFWKLYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGH 566 (648)
Q Consensus 489 ~~pw~l~k~--~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 566 (648)
.+||.+.++ +..++.+++.++.++++.+++||+||||++|++||++||++ .+|.+. .. .+ .|+
T Consensus 471 ~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~----~~w~~~---------~~-~~-~~~ 535 (560)
T 3h99_A 471 QAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----LTWDGI---------QQ-PL-LGH 535 (560)
T ss_dssp HCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC----CCTGGG---------GS-CC-CSC
T ss_pred cCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC----CChhhh---------hc-cC-CCC
Confidence 999988764 34567788889999999999999999999999999999986 234331 01 23 599
Q ss_pred ccCCCCCCCCCCChHHHHHHHH
Q 006368 567 KIGSPNPLFKELKDDEVEFFRS 588 (648)
Q Consensus 567 ~l~~~~~Lf~~i~~~~~~~~~~ 588 (648)
+|+++.+||+||+.++++++.+
T Consensus 536 ~i~~~~~lf~ri~~~~~~~~~~ 557 (560)
T 3h99_A 536 KVNPFKALYNRIDMRQVEALVE 557 (560)
T ss_dssp BCCCCSCSCCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHHh
Confidence 9999999999999998888774
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=7.1e-108 Score=921.09 Aligned_cols=519 Identities=21% Similarity=0.346 Sum_probs=464.9
Q ss_pred CCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 18 ~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
+...++||||||+|||||.||||||++ ++.+||++||+||+||+|.|++|+||||+||+.+|+++|++|+++|+++++.
T Consensus 5 ~~~~k~f~Ittp~pY~nG~lHiGHa~~-~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 5 MKVEKVFFVTSPIYYVNAAPHIGHVYS-TLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGE 83 (542)
T ss_dssp --CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEeCCCCCCCCchhhHHHHH-HHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456678999999999999999999999 6779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCcc
Q 006368 98 HKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177 (648)
Q Consensus 98 ~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ 177 (648)
|++++++|||++|.|+||++++|.+.|+++|.+|+++|+||++.+.++||++|++||+|++|++.|+. .|+.
T Consensus 84 ~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~--------~g~~ 155 (542)
T 3u1f_A 84 FKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDK--------DGNP 155 (542)
T ss_dssp HHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCE
T ss_pred HHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccc--------cCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988765 4566
Q ss_pred ccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee
Q 006368 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR 257 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR 257 (648)
|+ .|++||++++.+.++||||+++++++++.+|+++++.. .+|....+...+|+.++++||||||
T Consensus 156 ~~--------------~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~~~~~~~l~Dw~ISR 220 (542)
T 3u1f_A 156 CK--------------VSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGC-IVPEFRRREVIRAVEKGLPDLSVSR 220 (542)
T ss_dssp EE--------------EETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEE
T ss_pred cc--------------ccCCCCCcceeeccccceecchhHHHHHHHHHhhcccc-cCCchhhHhHhhhhhccccccCccc
Confidence 64 46779999999999999999999999999999988753 3477778888999999999999999
Q ss_pred ccC----CCcccCCcCCCCceeeeeecccchHHHhcccc----------chHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 258 DLK----WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY----------TNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 258 ~~~----WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~----------~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
++. ||||+|.+ +++++||||||+++|++....+ .++|..+|..|.+ +|++|+||++||+++
T Consensus 221 q~~~~~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d---~~~~G~D~~~fh~~~ 295 (542)
T 3u1f_A 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD---VHVIGKDILKFHAIY 295 (542)
T ss_dssp EGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS---EEEEEGGGHHHHHTH
T ss_pred cccCcCCCCCccCCC--cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcce---EEEecccccccccch
Confidence 976 99999987 6999999999999999876322 2344444444566 899999999999999
Q ss_pred HHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 324 ~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
|||+++++|.+ +|+.+++||||+.+|+|||||+||||+|.++++ +||+|+|||||++.+++++|++||++.+.+++|
T Consensus 296 ~~a~l~~~g~~--~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~-~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n 372 (542)
T 3u1f_A 296 WPAFLLSAGLP--LPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAE-EFGYDALKYFLLRESGFSDDGDYSDKNMIARLN 372 (542)
T ss_dssp HHHHHHHHTCC--CCSCEEEECCCEETTBCCBTTTTBCCCHHHHHH-HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHH
T ss_pred hHHHHHhhccc--ccceeccccceecCCceeccccCCCCChhHHHh-hcCchHHHHHHHhcCcccccccccHHHHHHHhh
Confidence 99999999875 789999999999999999999999999999999 799999999999889999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N 483 (648)
++|+++|+|+++|+..+..+ +++..|.. ....+.|+++++.+.++.+.+.++|++|++++|++.|++|++.+|
T Consensus 373 ~~l~n~l~N~~~r~~~~~~~-----~~~~~~~~--~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n 445 (542)
T 3u1f_A 373 GELADTLGNLVMRCTSAKIN-----VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAIN 445 (542)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhc-----ccCCCCcc--chhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654 55666543 245678999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCC
Q 006368 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (648)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 563 (648)
+|++..+||++.+++++++++++++++++++++++||+||||++|++||++||++......+.+ ..|+.++
T Consensus 446 ~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~---------~~~~~l~ 516 (542)
T 3u1f_A 446 AYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIEN---------FEFGAVP 516 (542)
T ss_dssp HHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGG---------GSTTCSC
T ss_pred HHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhh---------ccccCCC
Confidence 9999999999998888889999999999999999999999999999999999987543212211 2356788
Q ss_pred CCCccC---CCCCCCCCCChHHHH
Q 006368 564 AGHKIG---SPNPLFKELKDDEVE 584 (648)
Q Consensus 564 ~g~~l~---~~~~Lf~~i~~~~~~ 584 (648)
+|++|+ ++++||+||++++++
T Consensus 517 ~g~~i~~~~~~~~LF~kie~e~~e 540 (542)
T 3u1f_A 517 PGTRLGPAVEGEVLFSKRSTENTK 540 (542)
T ss_dssp TTCBCCCCCTTCCSSCCCCCCC--
T ss_pred CCCCcCCcCCCCCCcCCCChhhhh
Confidence 999996 368999999987554
No 4
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=6.2e-107 Score=912.02 Aligned_cols=521 Identities=21% Similarity=0.355 Sum_probs=464.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.+++++|||+|+|||||++||||+|+ ++.+|+++||+|++||+|.|++|+||||+||+.+|+++|++|+++++++.+.|
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYS-TLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHH-HHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34678999999999999999999998 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccc
Q 006368 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (648)
Q Consensus 99 ~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c 178 (648)
++++++|||++|.|+||++++|.+.++++|++|+++|+||++.+++|||+.|++|++++++.+.||. +|+.|
T Consensus 102 ~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~--------~g~~c 173 (564)
T 3kfl_A 102 KQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR--------DGKPC 173 (564)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCEE
T ss_pred HHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCC--------CCCEe
Confidence 9999999999999999999999999999999999999999999999999999999999999876643 45555
Q ss_pred cccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee-
Q 006368 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR- 257 (648)
Q Consensus 179 ~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR- 257 (648)
.. +..||++++.+.++||||+|++|+++|.+|+++++.. .+|...++.+.+|+++|++||||||
T Consensus 174 ~~--------------~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~wl~~gl~D~~ISR~ 238 (564)
T 3kfl_A 174 KV--------------SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNC-IVPEFRRREVIKTVEKGLFDLSISRK 238 (564)
T ss_dssp EE--------------ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEEE
T ss_pred cc--------------ccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhCCCCCccccCc
Confidence 32 1247999999999999999999999999999987643 2477888899999999999999999
Q ss_pred ---ccCCCcccCCcCCCCceeeeeecccchHHHhccccchH---------H--HhhcCCCCCcceEEEEeccccchhHhH
Q 006368 258 ---DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE---------W--EQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 258 ---~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~---------~--~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
++.||||||++ +++|+||||||+++|+|++..|+.+ | .+||| .+ +|++||||++||+++
T Consensus 239 ~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp--~d---v~~~GkDii~FH~~~ 311 (564)
T 3kfl_A 239 RESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWP--AD---VHVVGKDILKFHAIY 311 (564)
T ss_dssp GGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCS--CS---EEEEEGGGHHHHHTH
T ss_pred CCCCCCCCeecCCC--CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCc--cc---eEEEeecccchHHHH
Confidence 79999999976 7999999999999999986332432 7 89995 46 899999999999999
Q ss_pred HHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 324 ~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
||++|+++|.+ +|+++++||||+.+|+|||||+||||+|.++++ .||+|++||||++..+.++|++|+++.+.+++|
T Consensus 312 wpa~L~a~g~~--~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~-~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n 388 (564)
T 3kfl_A 312 WPAFLMSAELP--LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAK-EFGIDALKYFLMRESNFQDDGDYSDKNMVARLN 388 (564)
T ss_dssp HHHHHHHTTCC--CCSCEEEECCEEETTEECCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHH
T ss_pred HHHHHHhCCCC--CCcEEEEcccEeeCCccccccCCCCCCHHHHHH-HcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHH
Confidence 99999999974 789999999999999999999999999999999 799999999999888999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N 483 (648)
++++++++|+++|+.+++.. +++.+|... ...+.|++|++.+..+++.+.++|++++++.|++.|++|++.+|
T Consensus 389 ~~l~~~l~N~~~R~~~~~~~-----~~g~~p~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n 461 (564)
T 3kfl_A 389 GELADTLGNLVSRCVAPKIN-----VNGMWPEPA--EYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLN 461 (564)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCcCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 566666532 34578999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCC
Q 006368 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (648)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 563 (648)
+|++..+||.+.+.++.++.++++++.+++++++++|+||||++|++||++||++......|.+ ..++.++
T Consensus 462 ~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~---------~~~~~~~ 532 (564)
T 3kfl_A 462 AYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMEN---------YLFGIVK 532 (564)
T ss_dssp HHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGG---------SSSCCSC
T ss_pred HHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccccCHhH---------hhcccCC
Confidence 9999999999988777888899999999999999999999999999999999987543213433 1134578
Q ss_pred CCCccCCC---CCCCCCCChHHHHHHHHH
Q 006368 564 AGHKIGSP---NPLFKELKDDEVEFFRSK 589 (648)
Q Consensus 564 ~g~~l~~~---~~Lf~~i~~~~~~~~~~~ 589 (648)
+|++|+++ ++||+||+++++++++..
T Consensus 533 ~g~~~~~~~~~~~lf~r~~~~~~~~~~~~ 561 (564)
T 3kfl_A 533 PGTKIAGLAEGQVVFQKVTLPTEEGERSS 561 (564)
T ss_dssp TTCBCCCCCTTCCSSCCCCCC--------
T ss_pred CCCCcCCCCCCCCCcCCCCcchhhhhhhc
Confidence 89999998 999999998877776643
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.6e-101 Score=865.79 Aligned_cols=515 Identities=24% Similarity=0.420 Sum_probs=443.6
Q ss_pred CCCCCCCC-CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHH
Q 006368 13 PPKLPIPG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC 91 (648)
Q Consensus 13 ~~~~~~~~-~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~ 91 (648)
+++.|... ++++|||+|+|||||++||||+|+ ++.+|+++||+|++||+|.|++|+||||+||+.+|+++|.+|++++
T Consensus 15 ~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~-~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~ 93 (536)
T 4dlp_A 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYE-LIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLA 93 (536)
T ss_dssp ---------CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHH
T ss_pred cccCCCcCCCCCEEEeCCCCCCCCCcCcchhHH-HHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHH
Confidence 44445443 458999999999999999999998 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccC
Q 006368 92 DKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYE 171 (648)
Q Consensus 92 ~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~ 171 (648)
+++.+.|++++++|||++|.|+||+++.|...++++|++|.++|+||++.+.+|||++|++++++++++..
T Consensus 94 ~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~--------- 164 (536)
T 4dlp_A 94 DRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR--------- 164 (536)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC---------
T ss_pred HHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999887521
Q ss_pred CCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccc
Q 006368 172 SARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251 (648)
Q Consensus 172 ~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (648)
..|+ .|++||++++.+.++||||+|++|++.+.+++++++.. .+|....+.+.+|++++++
T Consensus 165 -~~g~-----------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~~l~~~l~ 225 (536)
T 4dlp_A 165 -ADGV-----------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGF-IMPAERRNEIVSFVKSGLK 225 (536)
T ss_dssp -TTSC-----------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHTCCC
T ss_pred -CCCC-----------------cccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCc-cCcHHHHHHHHHHHhcCCC
Confidence 1233 35678889999999999999999999999999987642 2477888899999999999
Q ss_pred cceeeec-cCCCcccCCcCCCCceeeeeecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhHHHHH
Q 006368 252 VRCITRD-LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPST 327 (648)
Q Consensus 252 d~~IsR~-~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~ 327 (648)
||||||+ +.||+|||++ +++++||||||+++|++++ +|+ .+|++||| .+ +|++|+||++||+++||++
T Consensus 226 D~~ISR~~~~WGipiP~~--~~~v~yvWfda~~~y~s~~-~~~~~~~~~~~~~p--~d---v~~~G~D~~~fh~~~~~a~ 297 (536)
T 4dlp_A 226 DLSISRTTFDWGIPVPGD--EKHVMYVWVDALTNYITAL-GYPDTTDERWAYWP--AN---AHIIGKDISRFHAVYWPAF 297 (536)
T ss_dssp CEECEEC--CCSCBCTTC--TTSEECHHHHHHHHHHHTT-TTTCTTSGGGGGCS--CS---EEEEEGGGHHHHHTHHHHH
T ss_pred ccCCccCCCcCCeeCCCC--CCCceEEeeCCcHHHHHhc-CCCCCchHHHhhCC--cc---eEEeechHHHHHHHHHHHH
Confidence 9999996 7899999976 7999999999999999986 675 36899995 45 8999999999999999999
Q ss_pred hhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHH
Q 006368 328 LLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELL 407 (648)
Q Consensus 328 l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 407 (648)
|+++|.+ +|+.+++||||+.+|+|||||+||+|+|.++++ .||+|++||||++..+.++|++|+++.+.+++|++++
T Consensus 298 l~a~g~~--~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~ 374 (536)
T 4dlp_A 298 LMSAQLP--LPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLA 374 (536)
T ss_dssp HHHTTCC--CCSCEEEECCEEC------------CCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCC
T ss_pred HHHCCCC--CCcEEEeeeeEeeCCceecccCCCCCCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999875 789999999999999999999999999999999 7999999999998788899999999999999999999
Q ss_pred HHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 006368 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (648)
Q Consensus 408 ~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~ 487 (648)
++++|+++|+.+++.+ ++++.+|.. ....+.|+++++.+..+++.+.++|++|+++.|++.+++|++.+|+|++
T Consensus 375 ~~l~N~~~R~~~~~~~----~~~~~~p~~--~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~ 448 (536)
T 4dlp_A 375 NDLGNLAQRSLSMIAK----NCEGKVPQP--GAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFA 448 (536)
T ss_dssp CCCHHHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----hcCCCCCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 566666643 2346789999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCc
Q 006368 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK 567 (648)
Q Consensus 488 ~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 567 (648)
..+||.+.+++..++.++++++.++++++++||+||||++|++||++||++... ..|.+ ...+ .+++|++
T Consensus 449 ~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~-~~~~~--------~~~~-~~~~g~~ 518 (536)
T 4dlp_A 449 GQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADK-RQFAD--------VLAS-PLAGGTD 518 (536)
T ss_dssp HHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTS-CSTHH--------HHHC-CCCTTCB
T ss_pred hCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCccc-cCHHH--------hhhc-cCCCCCC
Confidence 999999987677778889999999999999999999999999999999987543 22322 0112 5778999
Q ss_pred cCCCCCCCCCCChHHH
Q 006368 568 IGSPNPLFKELKDDEV 583 (648)
Q Consensus 568 l~~~~~Lf~~i~~~~~ 583 (648)
|+++.+||+||++++.
T Consensus 519 ~~~~~~lf~ri~~~~~ 534 (536)
T 4dlp_A 519 LPAPQPVFPRYVEADE 534 (536)
T ss_dssp CCCCCCSSCCCC----
T ss_pred cCCCCCCCCCCCCccc
Confidence 9999999999997643
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.6e-95 Score=816.45 Aligned_cols=504 Identities=27% Similarity=0.444 Sum_probs=447.0
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.|++.++||||+|||||.+||||+|+ ++.+|+++||+|++||+|.|++|+|+||+||+.+|+++|++|+++|+++.+.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~-~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYE-YIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46788999999999999999999998 67799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc-ccCCCCccccCCCCCcc
Q 006368 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQ 177 (648)
Q Consensus 99 ~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~g~~ 177 (648)
++++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+.+|||+.|++|+++.+++ |+
T Consensus 88 ~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~--------------- 152 (524)
T 2x1l_A 88 QRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQP--------------- 152 (524)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECT---------------
T ss_pred HHHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999998874 32
Q ss_pred ccccCCCCCccccCCCcCC-CCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceee
Q 006368 178 CENCGKLLNATDLKDPKCK-VCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256 (648)
Q Consensus 178 c~~cg~~l~~~el~~~~~~-~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~Is 256 (648)
|| +.|+ +||++++.+.++||||++++|++++.+++++++.. .+|...++.+.+|+.++++|||||
T Consensus 153 ---~G----------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~-i~p~~~~~~~~~~~~~~l~Dw~iS 218 (524)
T 2x1l_A 153 ---DG----------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF-IGPDARRNEIVSFVSGGLKDLSIS 218 (524)
T ss_dssp ---TS----------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGG-EESHHHHHHHHHHHTTCCCCEECE
T ss_pred ---CC----------CccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCe-eCCHHHHHHHHHHHHcCCcccceE
Confidence 12 2477 88999999999999999999999999999875421 247788888899998899999999
Q ss_pred ecc-CCCcccCCcCCCCceeeeeecccchHHHhccccch----HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhc
Q 006368 257 RDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (648)
Q Consensus 257 R~~-~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~----~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~ 331 (648)
|++ .||+|+|.+ +++++|||||++++|++.. +|+. .|..||| .| +|++|+||++||+++|||+++++
T Consensus 219 Rqr~~WG~~iP~~--~~~~~yvWfds~~~~~~~~-g~p~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~l~~~ 290 (524)
T 2x1l_A 219 RTTFDWGVPVPDH--PDHVMYVWVDALTNYLTGV-GFPDTESESFRRYWP--AD---LHMIGKDIIRFHTVYWPAFLMSA 290 (524)
T ss_dssp ESSCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTCTTSHHHHHHCS--CS---EEEEEGGGHHHHHTHHHHHHHHH
T ss_pred CCCCCcCccCCCC--CCCEEEEecCCchHHHHHc-CCCCCchHHHHhhCC--Ce---EEEEeechhHhHHHHHHHHHHHC
Confidence 985 699999955 6899999999999999874 6653 6889994 56 89999999999999999999998
Q ss_pred CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHh
Q 006368 332 GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLG 411 (648)
Q Consensus 332 g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~ 411 (648)
|. ++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++||++.+.+..|+++.++++
T Consensus 291 g~--~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 291 GL--PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD-TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp TC--CCCSCEEEECCEEECSCSEETTTEESSCHHHHHH-HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred CC--CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHH-HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 86 4789999999999999999999999999999999 79999999999987888999999999999998888999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhh
Q 006368 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (648)
Q Consensus 412 N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~p 491 (648)
|+++|+..++.+ ++++.+|.. ....+.|++++..+..+.+.+.++|++|+++.|+..+++|++.+|+|++..+|
T Consensus 368 n~~~r~~~~~~~----~~~~~~~~~--~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 368 NLAQRSLSMVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHH----HSTTBCCCC--CCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH----hcCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998876 344444422 12456789999999999999999999999999999999999999999999999
Q ss_pred hhhccC----ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCc
Q 006368 492 WKLYKE----DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK 567 (648)
Q Consensus 492 w~l~k~----~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 567 (648)
|.+.+. +..+++++++++.++++++++||+||||++|++||++||.+... .+|.+ . . ..+++|++
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~-~~~~~-------~-~--~~~~~~~~ 510 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDE-RDFSA-------I-A--NRIKPGTS 510 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTS-CSGGG-------G-S--SCCCTTCB
T ss_pred hhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCccc-cchhH-------h-h--hcCCCCCC
Confidence 998765 23456778899999999999999999999999999999986432 23332 0 0 13567999
Q ss_pred cCCCCCCCCCCCh
Q 006368 568 IGSPNPLFKELKD 580 (648)
Q Consensus 568 l~~~~~Lf~~i~~ 580 (648)
|+++.+||+||++
T Consensus 511 ~~~~~~lf~~~~~ 523 (524)
T 2x1l_A 511 LPAPSGIFPRYQN 523 (524)
T ss_dssp CCCCCCSSCCCC-
T ss_pred CCCCCCCCCCCCC
Confidence 9999999999975
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1e-93 Score=798.21 Aligned_cols=493 Identities=25% Similarity=0.448 Sum_probs=439.4
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|||+|+|||||.+||||+|+ ++.+|+++||+|++||+|.+++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYT-TVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++++|||++|.|+||+++.|.+.++++|++|+++|+||++.+.++||+.|++|+++.+
T Consensus 81 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~---------------------- 138 (500)
T 2d5b_A 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE---------------------- 138 (500)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTT----------------------
T ss_pred HHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchh----------------------
Confidence 9999999999999999999999999999999999999999999999999999988754
Q ss_pred cCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee---
Q 006368 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR--- 257 (648)
Q Consensus 181 cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR--- 257 (648)
++++.|++||.+++.+.+++|||++++|++.+.+++++++.+ ..|...++.+.+|++++++||||||
T Consensus 139 ---------l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~l~Dw~iSRp~~ 208 (500)
T 2d5b_A 139 ---------LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDL-IRPEGYRNEVLAMLAEPIGDLSISRPKS 208 (500)
T ss_dssp ---------SBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTS-EESHHHHHHHHHHHTSCCCCEECEEETT
T ss_pred ---------ccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCe-eCCHHHHHHHHHHHhcCCCCeecccccc
Confidence 334567788999999999999999999999999999987632 2377778888999999999999999
Q ss_pred ccCCCcccCCcCCCCceeeeeecccchHHHhccccch--HHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCc
Q 006368 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (648)
Q Consensus 258 ~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~--~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~ 335 (648)
+..||+|+|.+ +++++||||||+++|++.. +|+. ++.+||+ .| +|++|+||++||+++||++++++|.
T Consensus 209 ~~~WG~piP~~--~~~v~~vWfds~~~y~~~~-g~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~~~~~g~-- 278 (500)
T 2d5b_A 209 RVPWGIPLPWD--ENHVTFVWFDALLNYVSAL-DYPEGEAYRTFWP--HA---WHLIGKDILKPHAVFWPTMLKAAGI-- 278 (500)
T ss_dssp TCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTTCHHHHHHGG--GE---EEEEEGGGHHHHHTHHHHHHHHHTC--
T ss_pred cccCccccCCC--CCCeeEEccccchhhHHHc-CCCCCchHHHcCC--Ce---EEEEeechhhhHHHHHHHHHHHcCC--
Confidence 56799999976 6899999999999999864 6753 3788895 45 8999999999999999999999886
Q ss_pred ccCceEEeeceeec-CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHH
Q 006368 336 TLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (648)
Q Consensus 336 ~~p~~~~~hg~l~~-~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~ 414 (648)
++|+++++||||+. +|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++||++.+.++.|+.+.++++|++
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~ 357 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH-hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998 99999999999999999999 79999999999987788999999999999998889999999999
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006368 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (648)
Q Consensus 415 ~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (648)
+|+.+++.+ .+++.+|... +++++..+..+.+.+.++|++|+++.|+..++++++.+|+|++..+||.+
T Consensus 358 ~r~~~~~~~----~~~~~~~~~~-------~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~ 426 (500)
T 2d5b_A 358 QRTRAMLFR----FAEGRIPEPV-------AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWEL 426 (500)
T ss_dssp HHHHHHHHH----HSTTBCCCCC-------CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH----hcCCCCCchh-------HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 999988766 3444443211 14677888889999999999999999999999999999999999999988
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCC
Q 006368 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (648)
Q Consensus 495 ~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~L 574 (648)
.+++..+++++++++.+++++++++|+||||++|++||++||.+. . .+|.+ ...|+.+++|++|+++.+|
T Consensus 427 ~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~-~~~~~--------~~~~~~~~~~~~~~~~~~l 496 (500)
T 2d5b_A 427 FKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE-E-VRLEE--------AERWGLAEPRPIPEEAPVL 496 (500)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-S-CCGGG--------GGSSCCSCCCBCCSCCCCS
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCCc-c-cChhh--------hhhcccCCCCCCCCCCCCC
Confidence 765555677889999999999999999999999999999999764 2 23432 1135567789999999999
Q ss_pred CCCC
Q 006368 575 FKEL 578 (648)
Q Consensus 575 f~~i 578 (648)
|+||
T Consensus 497 f~~~ 500 (500)
T 2d5b_A 497 FPKK 500 (500)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9986
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=4.8e-93 Score=791.48 Aligned_cols=489 Identities=28% Similarity=0.463 Sum_probs=407.9
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|||+|+|||||.+||||+|+ ++.+|+++||+|++||+|.+++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYT-TIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHH-HHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccc
Q 006368 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (648)
Q Consensus 101 ~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~ 180 (648)
++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.++.
T Consensus 83 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~-------------------- 142 (497)
T 2csx_A 83 LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA-------------------- 142 (497)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------------
T ss_pred HHHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999876543
Q ss_pred cCCCCCccccCC-CcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeee--
Q 006368 181 CGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-- 257 (648)
Q Consensus 181 cg~~l~~~el~~-~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR-- 257 (648)
+ +.|++||.+++.+.+++|||+|++|++++.+++++++.. ..|...++.+.+|+++|++||||||
T Consensus 143 -----------~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~Dw~isR~~ 210 (497)
T 2csx_A 143 -----------EDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEF-IQPDYRRNEIISFVKQGLKDLSVTRPR 210 (497)
T ss_dssp --------------------------CCEEEEECTTSSHHHHHHHHHHCTTS-BCSHHHHHHHHHHHHHCCCCEECEEET
T ss_pred -----------cCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCe-eCcHHHHHHHHHHHhcCCccccccccC
Confidence 2 456778999999999999999999999999999987642 2366667778899998999999999
Q ss_pred -ccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcc
Q 006368 258 -DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT 336 (648)
Q Consensus 258 -~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~ 336 (648)
+..||+|+|.+ +++++||||||+++|+|++.. +..+|| |.| +|++|+||++||+++||++++++|. +
T Consensus 211 ~~~~WG~~iP~~--~~~~i~vW~ds~~~~~s~~~~---~~~~~~--p~d---i~~~G~D~~~~H~~~~~a~l~~~g~--~ 278 (497)
T 2csx_A 211 SRVKWGIPVPFD--PEHTIYVWFDALFNYISALED---KVEIYW--PAD---LHLVGKDILRFHTVYWPAFLMSLGY--E 278 (497)
T ss_dssp TTCCSSEEETTE--EEEEECSHHHHHTHHHHTTTT---THHHHC--SCS---CEEEEGGGHHHHHTHHHHHHHHHTC--C
T ss_pred CCCCCceecCCC--CCceEEEecccchhhcccCCC---cchhhC--Cce---EEEeecchhHhHHHHHHHHHHHcCC--C
Confidence 56899999976 689999999999999997621 112788 456 8999999999999999999999886 4
Q ss_pred cCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHH
Q 006368 337 LMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINR 416 (648)
Q Consensus 337 ~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R 416 (648)
+|+++++||||+.+|+|||||+||+|+|.++++ +||+|++|||+++.++.++|++||++.+.++.|++++++++|+++|
T Consensus 279 ~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R 357 (497)
T 2csx_A 279 LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSR 357 (497)
T ss_dssp CCSCEEEECCEESSSSBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCcEEEECcEEEeCCceeCCcCCCCCCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998 7999999999998788899999999999999899999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 006368 417 VLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK 496 (648)
Q Consensus 417 ~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k 496 (648)
+.+++.+ .+++.++ .+.|++++..+..+.+.+.++|++|+++.|+..+++|++.+|+|++..+||.+.+
T Consensus 358 ~~~~~~~----~~~~~~~-------~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~ 426 (497)
T 2csx_A 358 VVNMAHK----FLGGEVS-------GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNK 426 (497)
T ss_dssp HHHHHHH----HSTTCBC-------CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHH----hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcc
Confidence 9999876 2333332 1124578899999999999999999999999999999999999999999998876
Q ss_pred C-ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCCCCccccccccccCcccccCCCCccCCCCCccCCCCCCC
Q 006368 497 E-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLF 575 (648)
Q Consensus 497 ~-~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~Lf 575 (648)
+ +..+++++++++.+++++++++|+||||++|++||++||.+. ..|.+ . .|..+ |++|+++++||
T Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~---~~~~~-------~--~~~~~--~~~~~~~~~lf 492 (497)
T 2csx_A 427 ERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKE---FLKEL-------K--PYSKN--TYKLGERKILF 492 (497)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSC---CCSSC-------C--SCCCS--CBCCCCCCCSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCCc---cchhh-------c--ccccC--CCcCCCCCCCC
Confidence 3 445677889999999999999999999999999999999753 12322 1 23333 99999999999
Q ss_pred CCCCh
Q 006368 576 KELKD 580 (648)
Q Consensus 576 ~~i~~ 580 (648)
+||++
T Consensus 493 ~~~~~ 497 (497)
T 2csx_A 493 PKREG 497 (497)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99963
No 9
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1.5e-81 Score=734.45 Aligned_cols=496 Identities=20% Similarity=0.276 Sum_probs=399.2
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc-CCCH----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP---------- 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~-g~~~---------- 87 (648)
.++++|+|++|+|||||.|||||+++ ++.+|+++||+||+||+|+|++|+|+||+||+.+|+++ |.++
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~-~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~ 113 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQA-RSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHH-HHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCCcEEEecCCCCCCCCCchhhhHh-HHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHH
Confidence 36678999999999999999999999 56799999999999999999999999999999999996 8764
Q ss_pred ------HHHHHHHHHHHHHHHhhcC--cccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 88 ------KEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~--i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
.++++++.+.+++++++|| +++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|++|
T Consensus 114 ~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHh
Confidence 5678888999999999999 67788999999999999999999999999999999999999999999999998
Q ss_pred -ccc--------------------------------CCC-----------Cc----------------------------
Q 006368 160 -EGT--------------------------------CPF-----------EG---------------------------- 167 (648)
Q Consensus 160 -~g~--------------------------------cp~-----------~~---------------------------- 167 (648)
+|. .|. |.
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred hcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCc
Confidence 321 111 00
Q ss_pred --------------------------------------------------cccCCC---------CCccccccCCCCCc-
Q 006368 168 --------------------------------------------------CNYESA---------RGDQCENCGKLLNA- 187 (648)
Q Consensus 168 --------------------------------------------------c~~~~~---------~g~~c~~cg~~l~~- 187 (648)
|+.+|. .-..|+.||++.+.
T Consensus 274 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~ 353 (821)
T 1ile_A 274 QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP 353 (821)
T ss_dssp CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGG
T ss_pred EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccC
Confidence 111000 00124556765441
Q ss_pred --------------ccc--------------CCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHH-
Q 006368 188 --------------TDL--------------KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA- 238 (648)
Q Consensus 188 --------------~el--------------~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~- 238 (648)
++| ..|+|+|||++++++.++|||++++++++++.+++++.... |+..
T Consensus 354 ~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~---P~~~~ 430 (821)
T 1ile_A 354 FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWV---PPHIK 430 (821)
T ss_dssp GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEES---SGGGT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEE---Cchhh
Confidence 112 25899999999999999999999999999999999886543 3333
Q ss_pred HHHHHHHHhcccccceeeeccCCCcccCCcCC------------------------------------------------
Q 006368 239 IQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------------------------------------ 270 (648)
Q Consensus 239 ~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~------------------------------------------------ 270 (648)
.+++.+||+ +++|||||||+.||+|||.+.+
T Consensus 431 ~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~ 509 (821)
T 1ile_A 431 EGRYGEWLK-NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 509 (821)
T ss_dssp TTTTHHHHH-TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEE
T ss_pred HhHHHHHHh-CCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchh
Confidence 235678996 6999999999999999995310
Q ss_pred -CCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhh-cCCCcccCceEEee
Q 006368 271 -KEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLG-TGENWTLMKTISVT 344 (648)
Q Consensus 271 -~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a-~g~~~~~p~~~~~h 344 (648)
+.+|+|||||+.+.|++.. +|+ +.|..|| |.| +|++|+||++||....-++..+ .|. ++|+++++|
T Consensus 510 r~~dvld~WfdS~~~~~~~~-~~p~~~~~~f~~~~--P~d---l~~~G~D~~r~w~~~~~~~~~~~~~~--~pf~~v~~h 581 (821)
T 1ile_A 510 RVPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESF--PAD---FIAEGIDQTRGWFNSLHQLGVMLFGS--IAFKNVICH 581 (821)
T ss_dssp ECSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHS--SBS---BEEEEGGGGGTHHHHHHHHHHHHHSS--CSBSEEEEE
T ss_pred hcccccceecccccchHhhc-CCCccchHHHhhcC--Ccc---cccchhhhhccHHHHHHHHHHHhcCC--CCcceEEEE
Confidence 1258999999999888754 554 4588899 456 7999999999864332222222 243 367999999
Q ss_pred ceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhC
Q 006368 345 EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (648)
Q Consensus 345 g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k 423 (648)
||++ .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++||++.+.+++ +++.++++|+++|+..+...
T Consensus 582 g~vl~~~G~KMSKS~GNvV~p~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~~ 659 (821)
T 1ile_A 582 GLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYANL 659 (821)
T ss_dssp CCEECTTSSCCCTTTTCCCCHHHHHT-TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHHH
T ss_pred eeEECCCCCCCCccCCCCCCHHHHHH-HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 9987 699999999999999999998 79999999999998889999999999998844 56899999999997643211
Q ss_pred CCCCCCCCCCC-CC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhh--hhhhccC
Q 006368 424 PPGQGYGSIVP-DA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ--FWKLYKE 497 (648)
Q Consensus 424 ~~~~~~~~~~p-~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~--~~~N~yi~~~~--pw~l~k~ 497 (648)
. .+. | .. ........|+++++.+..+.+.+.++|++|+++.|+..|++++ ..+|.|++..+ ||...+.
T Consensus 660 ~---~~~---~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~ 733 (821)
T 1ile_A 660 D---RPD---LKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDA 733 (821)
T ss_dssp H---CCC---TTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTT
T ss_pred c---cCC---cccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 0 111 1 00 0012356789999999999999999999999999999999999 67999998875 5876532
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 498 ~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
..+ .+++.++.++++.+++||+||||++|++||++|+.
T Consensus 734 -~~r-~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~ 771 (821)
T 1ile_A 734 -LDR-EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVR 771 (821)
T ss_dssp -SST-THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTT
T ss_pred -HHH-HHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccc
Confidence 122 24566777889999999999999999999999985
No 10
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=7.1e-80 Score=715.82 Aligned_cols=486 Identities=19% Similarity=0.258 Sum_probs=400.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHH----cCCCHH------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DNCSPK------ 88 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~----~g~~~~------ 88 (648)
.++++|+|++|||||||.|||||+++ ++.+||++||+||+||+|+|++|+|+||.+|+.++++ +|+++.
T Consensus 31 ~~~~~f~i~~ppPy~nG~lHiGHa~~-~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~ 109 (862)
T 1gax_A 31 SGKPPFVIFMPPPNVTGSLHMGHALD-NSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109 (862)
T ss_dssp CCSCEEEEECCCCBSSSCCCHHHHHH-HHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTH
T ss_pred CCCCcEEEEcCCCCCCCCcchhhhHH-HHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHH
Confidence 35678999999999999999999999 5669999999999999999999999999999999874 476654
Q ss_pred ------HHHHHHHHHHHHHHhhcCcccccccC---CCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccc
Q 006368 89 ------EICDKYHVIHKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (648)
Q Consensus 89 ------e~~~~~~~~~~~~~~~l~i~~D~f~r---T~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (648)
++++++...+++++++||+++| |.| |+++.|.+.|+++|.+|+++|+||++.+.++||+.|+++|+|.+|
T Consensus 110 f~~~~~~~~~~~~~~~~~q~~rlG~s~D-w~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV 188 (862)
T 1gax_A 110 FLERVWQWKEESGGTILKQLKRLGASAD-WSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEV 188 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-GGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccc
Confidence 6789999999999999999998 344 999999999999999999999999999999999999999999987
Q ss_pred c-----c------------------------------------------------cCCCCcccc----------------
Q 006368 160 E-----G------------------------------------------------TCPFEGCNY---------------- 170 (648)
Q Consensus 160 ~-----g------------------------------------------------~cp~~~c~~---------------- 170 (648)
+ | .||. |+.
T Consensus 189 ~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~--~~~~ipii~~~~V~~~~GT 266 (862)
T 1gax_A 189 ETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPL--TEVWIPILADPAVEKDFGT 266 (862)
T ss_dssp EECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTT--CCCBCCEEECTTCCTTSSS
T ss_pred ccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCC--CCCeeeEEeccccccCCCC
Confidence 5 1 2554 221
Q ss_pred ---------------------------CCCCCcccccc--CCCC------------------------CccccCCCcCCC
Q 006368 171 ---------------------------ESARGDQCENC--GKLL------------------------NATDLKDPKCKV 197 (648)
Q Consensus 171 ---------------------------~~~~g~~c~~c--g~~l------------------------~~~el~~~~~~~ 197 (648)
-+..|..|++| |.+- .+..+..|+|+|
T Consensus 267 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R 346 (862)
T 1gax_A 267 GALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSR 346 (862)
T ss_dssp SEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETT
T ss_pred cceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecC
Confidence 13567888888 6421 112346799999
Q ss_pred CCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCC-Cceee
Q 006368 198 CRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-EKVFY 276 (648)
Q Consensus 198 ~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~-~~v~y 276 (648)
||++++.+.++|||++++++++.+.+++++.+. ..+|++..++..+||+ +++|||||||+.||+|||.+.++ ++++|
T Consensus 347 ~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~pIP~w~~~~~~~i~ 424 (862)
T 1gax_A 347 CGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQIPAWYCEDCQAVN 424 (862)
T ss_dssp TCSBCCEEECCEEEECHHHHHHHHHHHHHHTCC-EESSSHHHHHHHHHHH-TCCCCCCBCCCSSSCCCCCEEETTTCCEE
T ss_pred CCCeEEEEecceEEEEhHHHHHHHHHHHHcCCc-eEcCHHHHHHHHHHHh-cccceeEecccCCCcccCceecCCCCEEE
Confidence 999999999999999999999999999975442 2357788888999997 59999999999999999975432 24455
Q ss_pred e------------------------------eecccchHHHhccccc---hHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 277 V------------------------------WFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 277 V------------------------------WfDa~~~yis~~~~~~---~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
| |||+.+.|++.. +|+ ++++.|| |.| +|++|+||++||...
T Consensus 425 v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~-~~p~~~~~~~~~~--P~d---~~v~G~Dii~~W~a~ 498 (862)
T 1gax_A 425 VPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL-GWPEETEDLKAFY--PGD---VLVTGYDILFLWVSR 498 (862)
T ss_dssp CCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGG-TTTSCCHHHHHSC--SBS---CEEEEGGGTTTTHHH
T ss_pred EeccccccccchhhhhcCchheecCCcccceeeccCCcchhhc-cCCCchHHHHhhC--Cce---EEecCccccccHHHH
Confidence 5 556555666543 665 3588888 457 799999999986544
Q ss_pred HHHHhh-hcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 324 FPSTLL-GTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 324 ~pa~l~-a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
.-++.+ ..|. .|++++++||++. .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+...
T Consensus 499 ~~~~~~~~~g~--~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 499 MEVSGYHFMGE--RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp HHHHHHHHSSS--CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred HHHHHHHhcCC--CcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHH-HcChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 333322 2232 3569999999997 899999999999999999999 7999999999998778899999999999987
Q ss_pred hhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--
Q 006368 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS-- 479 (648)
Q Consensus 402 ~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~-- 479 (648)
+++.++++|+++.+...+.. +. |.. ......|+++++.++.+++.+.++|++|+|+.|+..+++|+
T Consensus 576 --~~f~nkl~N~~rf~~~~~~~-----~~---~~~--~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~ 643 (862)
T 1gax_A 576 --RNFANKLYNAARFVLLSREG-----FQ---AKE--DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWS 643 (862)
T ss_dssp --HHHHHHHHHHHHHHHHHSSS-----CC---CCB--CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcccC-----CC---Ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56999999997655433221 21 111 12457899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 480 SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 480 ~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
..+|.|++..+||... + ..++..++.++++.+..||+||||++|++||+.|+
T Consensus 644 ~~~n~Yie~~k~~l~~-~----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~ 695 (862)
T 1gax_A 644 EFCDWYLEAAKPALKA-G----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALT 695 (862)
T ss_dssp HTTTTHHHHHHHHHHT-T----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HhhHHHHHHcchhhhc-c----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 4699999999998532 2 23456778889999999999999999999999997
No 11
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=3.6e-78 Score=707.49 Aligned_cols=494 Identities=17% Similarity=0.238 Sum_probs=402.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCH-----------
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP----------- 87 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~----------- 87 (648)
.++++|+|++|||||||.|||||+++ ++.+||++||+||+||+|.|++|+|+||+||+.+|+++|++|
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n-~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~ 123 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALN-KILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHH-HHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHH-HHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHH
Confidence 46778999999999999999999999 677999999999999999999999999999999999999876
Q ss_pred -HHHHHHHHHHHHHHHhhcCccc--ccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccccccc---c
Q 006368 88 -KEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE---G 161 (648)
Q Consensus 88 -~e~~~~~~~~~~~~~~~l~i~~--D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~---g 161 (648)
.++++++.+.++++|++||+++ |++++|++|.|.+.++++|.+|+++|+||++.+.++||+.|+++|+|.+|+ +
T Consensus 124 ~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~ 203 (917)
T 1ffy_A 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDK 203 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccc
Confidence 6789999999999999999975 689999999999999999999999999999999999999999999999986 1
Q ss_pred c----------------------------CCC--Ccc----ccCC------------------------------CCC--
Q 006368 162 T----------------------------CPF--EGC----NYES------------------------------ARG-- 175 (648)
Q Consensus 162 ~----------------------------cp~--~~c----~~~~------------------------------~~g-- 175 (648)
+ .|+ +|| -.++ .+-
T Consensus 204 ~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 283 (917)
T 1ffy_A 204 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIK 283 (917)
T ss_dssp EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCC
T ss_pred cCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceee
Confidence 1 121 111 0000 000
Q ss_pred ccccccCCCCCcc-------------------------------------------------------------------
Q 006368 176 DQCENCGKLLNAT------------------------------------------------------------------- 188 (648)
Q Consensus 176 ~~c~~cg~~l~~~------------------------------------------------------------------- 188 (648)
..|+.||..|...
T Consensus 284 ~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 363 (917)
T 1ffy_A 284 LEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFE 363 (917)
T ss_dssp CCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCS
T ss_pred eeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccC
Confidence 2233344321100
Q ss_pred -------------c--------------cCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHH
Q 006368 189 -------------D--------------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQA 241 (648)
Q Consensus 189 -------------e--------------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 241 (648)
+ ...|+|+|||++++++.++|||++++++++++.+++++... .|....++
T Consensus 364 G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~---~P~~~~~r 440 (917)
T 1ffy_A 364 GMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNF---KVNWGKTR 440 (917)
T ss_dssp SSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEE---SSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcc---cCHHHHHH
Confidence 0 12489999999999999999999999999999999997553 37778889
Q ss_pred HHHHHhcccccceeeeccCCCcccCCcCCC-Cc------------------eeeeeecccchHHHhc---------cccc
Q 006368 242 THAWLKEGLKVRCITRDLKWGVPVPLERFK-EK------------------VFYVWFDAPIGYVSIT---------SCYT 293 (648)
Q Consensus 242 ~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~-~~------------------v~yVWfDa~~~yis~~---------~~~~ 293 (648)
+.+||++ ++|||||||+.||+|||.+.++ ++ .+|+|||+..+|+... ..+.
T Consensus 441 ~~~~l~~-~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~ 519 (917)
T 1ffy_A 441 IYNMVRD-RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFT 519 (917)
T ss_dssp HHHHHHH-CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCE
T ss_pred HHHHHhc-CccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCccccc
Confidence 9999986 8999999999999999985432 33 4589999888877521 0121
Q ss_pred h------HH-------H-------h-hcCCCCCcceEEEEeccccc--hhHhHHHHHhhhcCCCcccCceEEeeceee-c
Q 006368 294 N------EW-------E-------Q-WWKNPENVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y 349 (648)
Q Consensus 294 ~------~~-------~-------~-~w~~p~~~~~i~~~GkDi~~--fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~ 349 (648)
. -| . . .| |.| +|+.|+||++ ||..+++++.+. |. .|++++++|||++ .
T Consensus 520 ~~~D~lD~WfdSg~~~~~~l~~~~~~~~--P~D---l~~~G~D~~r~wf~~~l~~s~~~~-g~--~Pfk~v~~hG~V~d~ 591 (917)
T 1ffy_A 520 KETDIMDVWFDSGSSHRGVLETRPELSF--PAD---MYLEGSDQYRGWFNSSITTSVATR-GV--SPYKFLLSHGFVMDG 591 (917)
T ss_dssp ECCCEECHHHHHHTHHHHTTTTSTTCCS--SBS---EEEEEGGGGTTHHHHHHHHHHHHH-SS--CSBSEEEEECCEECT
T ss_pred ccCCCcCeecCCCCCHHHHcCCchhcCC--Cce---EEEEEecccccHHHHHHHHHHHhh-CC--CcccceeEeeeEEcC
Confidence 0 01 0 0 13 456 8999999995 889999888753 43 3579999999998 4
Q ss_pred CCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCC
Q 006368 350 ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGY 429 (648)
Q Consensus 350 ~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~ 429 (648)
+|+|||||+||+|+|.++++ +||+|++|||+++ +++++|++||++.+... ++..++|.|++++++..+.. +
T Consensus 592 ~G~KMSKSlGNvV~P~dvi~-~yGaDalR~~lls-~~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~-----~ 662 (917)
T 1ffy_A 592 EGKKMSKSLGNVIVPDQVVK-QKGADIARLWVSS-TDYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNIND-----F 662 (917)
T ss_dssp TSCCCCSSSSCCCCHHHHHH-HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTT-----C
T ss_pred CCcCcccccCCcCChHHHHH-hCCHHHHHHHHhc-cCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhc-----c
Confidence 99999999999999999999 7999999999998 88899999999999876 56789999999998776543 3
Q ss_pred C---CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHhhhhhhhccC-ChhhHH
Q 006368 430 G---SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EGNAYLQESQFWKLYKE-DQPSCS 503 (648)
Q Consensus 430 ~---~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~--~~N~yi~~~~pw~l~k~-~~~~~~ 503 (648)
+ +.++. ....+.|++++..++.+++.+.++|++|+|+.|++.+++|+. .+|.|++..+||..... +.....
T Consensus 663 ~~~~~~v~~---~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~ 739 (917)
T 1ffy_A 663 NPDTDSIPE---SELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRR 739 (917)
T ss_dssp CHHHHCCCG---GGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHH
T ss_pred CcccccCCc---cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHH
Confidence 2 11221 124578999999999999999999999999999999999997 68999999999865432 222334
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHhCC
Q 006368 504 IVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (648)
Q Consensus 504 ~vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~~ 537 (648)
++..++..++..+..||+||||++|++||+.|+.
T Consensus 740 ~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 740 SMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHccc
Confidence 5566777889999999999999999999999974
No 12
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.3e-75 Score=680.89 Aligned_cols=483 Identities=19% Similarity=0.275 Sum_probs=387.1
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc----------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------- 83 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------------- 83 (648)
++++|+|++|+|||||.|||||+++ ++.+|+++||+||+||+|.+++|+|+||+||+..|++.
T Consensus 32 ~~~~~~i~~~~Py~nG~lHiGH~~~-~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g 110 (810)
T 1wkb_A 32 KEKKFYITVAFPYLSGHLHVGHART-YTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYK 110 (810)
T ss_dssp GGGEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCCcEEEEeCCCCCCCCCccccchh-HHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhC
Confidence 4678999999999999999999999 57799999999999999999999999999999887642
Q ss_pred --------CCCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCc--hHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcC
Q 006368 84 --------NCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCK 151 (648)
Q Consensus 84 --------g~~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 151 (648)
+..|.++++++.+.+++++++|||++| .+++|++ +.|.+.++++|.+|+++|+||++.+.++||+.|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 190 (810)
T 1wkb_A 111 VPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (810)
T ss_dssp CCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence 357899999999999999999999998 6778999 9999999999999999999999999999999999
Q ss_pred ccccccccccc-C----------------------------CC-----------CccccC-----C----C---------
Q 006368 152 RFLADRLVEGT-C----------------------------PF-----------EGCNYE-----S----A--------- 173 (648)
Q Consensus 152 ~~l~d~~v~g~-c----------------------------p~-----------~~c~~~-----~----~--------- 173 (648)
++|++.+|+.. | |. |.|.|. + .
T Consensus 191 t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~ 270 (810)
T 1wkb_A 191 TPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAA 270 (810)
T ss_dssp EECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHH
T ss_pred CCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHH
Confidence 99999987531 1 11 111100 0 0
Q ss_pred ----C------------C-------------------------------------------------------ccccccC
Q 006368 174 ----R------------G-------------------------------------------------------DQCENCG 182 (648)
Q Consensus 174 ----~------------g-------------------------------------------------------~~c~~cg 182 (648)
+ | ++|..||
T Consensus 271 ~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~ 350 (810)
T 1wkb_A 271 YKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYD 350 (810)
T ss_dssp HHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCS
T ss_pred HHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcC
Confidence 0 0 1233334
Q ss_pred CC---------C-----------------------Ccc------------------------------------------
Q 006368 183 KL---------L-----------------------NAT------------------------------------------ 188 (648)
Q Consensus 183 ~~---------l-----------------------~~~------------------------------------------ 188 (648)
-. . ++.
T Consensus 351 l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~~~i~~~ 430 (810)
T 1wkb_A 351 IDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKE 430 (810)
T ss_dssp CCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHHHHHHHH
T ss_pred CChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhHHHHHHH
Confidence 21 0 000
Q ss_pred -----------ccC-CCcCCCCCCCcEEe-eccceeeechh--hHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccc
Q 006368 189 -----------DLK-DPKCKVCRNAPQIR-DTNHLFLDLPA--LRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253 (648)
Q Consensus 189 -----------el~-~~~~~~~g~~~~~~-~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~ 253 (648)
++. .|+|++||++++.+ .++||||++++ +++.+.+++++... +|.+..+++.+|++ +++||
T Consensus 431 L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~---~P~~~~~~~~~~l~-~l~Dw 506 (810)
T 1wkb_A 431 MLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKI---LPETRRAQFEAIID-WLDKK 506 (810)
T ss_dssp HHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEE---ESGGGHHHHHHHHH-HCCCE
T ss_pred HHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEE---ECcchhchHHHHhh-cccCc
Confidence 001 38899999999988 79999999996 99999999987653 46666778899997 69999
Q ss_pred eeeeccCCCcccCCc------CCCCceeeeeecccchHHHh-----------------------------------cccc
Q 006368 254 CITRDLKWGVPVPLE------RFKEKVFYVWFDAPIGYVSI-----------------------------------TSCY 292 (648)
Q Consensus 254 ~IsR~~~WGi~vP~~------~~~~~v~yVWfDa~~~yis~-----------------------------------~~~~ 292 (648)
||||++.||+|+|.+ .+.+.++|||+++..+|++. ..++
T Consensus 507 ~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~ 586 (810)
T 1wkb_A 507 ACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGI 586 (810)
T ss_dssp ECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSC
T ss_pred cccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccccccCccccchhhhCC
Confidence 999999999999953 23467999999998877651 0112
Q ss_pred c--------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccCh
Q 006368 293 T--------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364 (648)
Q Consensus 293 ~--------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~ 364 (648)
+ ++|+.|| |.| +|++|+||++||..+|.++..++--..++|+++++||||+.+|+|||||+||+|+|
T Consensus 587 ~~~~~~~~~~~~~~~~--p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p 661 (810)
T 1wkb_A 587 PAEIIHEMKEEFEYWY--PLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNF 661 (810)
T ss_dssp CHHHHHHHHHHHHHHC--SCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBH
T ss_pred CHHHHHhhHHHHHhhC--Cce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCH
Confidence 2 2356677 456 89999999999999985443332111246799999999999999999999999999
Q ss_pred hhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHH
Q 006368 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQL 444 (648)
Q Consensus 365 ~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~ 444 (648)
.++++ .||+|++||||++.+++++|++||++.+... .++.+++.|+++++.... .|.. ......
T Consensus 662 ~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~~-----------~~~~--~~~~~~ 725 (810)
T 1wkb_A 662 IDAIE-ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEYE-----------VKGN--VELKDI 725 (810)
T ss_dssp HHHHH-HHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHTCC-----------CCSC--CCCCHH
T ss_pred HHHHH-HcChHHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcc-----------Cccc--ccCCHH
Confidence 99999 7999999999997788999999999988775 556777777776654310 1111 123467
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 006368 445 TKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPF 523 (648)
Q Consensus 445 d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i-~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~ 523 (648)
|++++..+..+.+.+.++|++|+++.|+..+ +.+++.+|+|++..++ .+. ..+..++.++++.+++||+||
T Consensus 726 d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~-----~~~---~~~~~~l~~~l~~l~~lLaP~ 797 (810)
T 1wkb_A 726 DRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD---EAKRYVLRTLADVWVRLMAPF 797 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC---HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcC-----cch---hHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999865 6999999999998763 111 223567889999999999999
Q ss_pred chHHHHHHHHHhC
Q 006368 524 MPSFSVEVNKQLN 536 (648)
Q Consensus 524 ~P~~s~~i~~~L~ 536 (648)
||++|++||++||
T Consensus 798 ~P~~aEelw~~Lg 810 (810)
T 1wkb_A 798 TPHICEELWEKLG 810 (810)
T ss_dssp SHHHHHHHHHHCC
T ss_pred hhHHHHHHHHhcC
Confidence 9999999999986
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.1e-73 Score=669.86 Aligned_cols=482 Identities=19% Similarity=0.276 Sum_probs=384.7
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHc---------------C--
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------N-- 84 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~---------------g-- 84 (648)
++|+|++|+|||||.|||||+++ ++.+||++||+||+||+|+|++|+|+||+||+..|++. |
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~ 112 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHART-YTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVP 112 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHH-HHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCC
T ss_pred CcEEEEeCCCCCCCCcchhhhHH-HHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCC
Confidence 68999999999999999999999 57799999999999999999999999999999888652 3
Q ss_pred -------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCc--hHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcc
Q 006368 85 -------CSPKEICDKYHVIHKDVYKWFDISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRF 153 (648)
Q Consensus 85 -------~~~~e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~--~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 153 (648)
..|.++++++...+++++++||+++| ..+.|++ |.|.+.++++|.+|+++|+||++...++||+.|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~ 192 (967)
T 1wz2_A 113 EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192 (967)
T ss_dssp HHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCC
Confidence 36889999999999999999999998 4677999 999999999999999999999999999999999999
Q ss_pred ccccccccc-----------------------------CCC-----------CccccC----------------------
Q 006368 154 LADRLVEGT-----------------------------CPF-----------EGCNYE---------------------- 171 (648)
Q Consensus 154 l~d~~v~g~-----------------------------cp~-----------~~c~~~---------------------- 171 (648)
|++.+|+.. .|+ |.|.|.
T Consensus 193 Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~ 272 (967)
T 1wz2_A 193 LGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYK 272 (967)
T ss_dssp CCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHH
T ss_pred cchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHH
Confidence 999977531 111 111000
Q ss_pred -----------------------------------------------------------C---------------CCC--
Q 006368 172 -----------------------------------------------------------S---------------ARG-- 175 (648)
Q Consensus 172 -----------------------------------------------------------~---------------~~g-- 175 (648)
| .+|
T Consensus 273 ~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~ 352 (967)
T 1wz2_A 273 LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352 (967)
T ss_dssp HHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCC
T ss_pred HHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCc
Confidence 0 000
Q ss_pred ------------------------ccccccC-------------------------CCCCc-------------------
Q 006368 176 ------------------------DQCENCG-------------------------KLLNA------------------- 187 (648)
Q Consensus 176 ------------------------~~c~~cg-------------------------~~l~~------------------- 187 (648)
+.|+.|| .+...
T Consensus 353 ~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~i~~~L~ 432 (967)
T 1wz2_A 353 PRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEML 432 (967)
T ss_dssp CCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTTTHHHHH
T ss_pred hhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHHHHHHHH
Confidence 0111111 11000
Q ss_pred --------cccC-CCcCCCCCCCcEEe-eccceeeech--hhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhccccccee
Q 006368 188 --------TDLK-DPKCKVCRNAPQIR-DTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCI 255 (648)
Q Consensus 188 --------~el~-~~~~~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~I 255 (648)
.++. .|+|++||++++.+ .++|||++++ ++++.+.++++++.. +|.+..+++.+|++ +++||||
T Consensus 433 ~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~---~P~~~~~~~~~~l~-~l~DW~I 508 (967)
T 1wz2_A 433 EKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKI---LPETRRAQFEAIID-WLDKKAC 508 (967)
T ss_dssp HHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCE---ESSTTHHHHHHHHH-SCCEECC
T ss_pred hCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEe---eCccccchHHHhhh-cccCeee
Confidence 0111 48899999999998 6999999998 599999999987654 35555678889996 6999999
Q ss_pred eeccCCCcccCCcC------CCCceeeeeecccchHHHh-----------------------------------ccccc-
Q 006368 256 TRDLKWGVPVPLER------FKEKVFYVWFDAPIGYVSI-----------------------------------TSCYT- 293 (648)
Q Consensus 256 sR~~~WGi~vP~~~------~~~~v~yVWfDa~~~yis~-----------------------------------~~~~~- 293 (648)
||++.||+|+|.+. ..+.++|||+++..+++.. ..+++
T Consensus 509 SRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~ 588 (967)
T 1wz2_A 509 ARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPA 588 (967)
T ss_dssp CBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCH
T ss_pred ccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccCccccchhhcCCCH
Confidence 99999999999641 1256899999987766540 01122
Q ss_pred -------hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhh
Q 006368 294 -------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366 (648)
Q Consensus 294 -------~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~ 366 (648)
++|+.|| |.| +|++|+||++||..+|.++..++--..++|+++++||||+.+|+|||||+||+|+|.+
T Consensus 589 ~~~~~~~~~~~~w~--P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d 663 (967)
T 1wz2_A 589 EIIHEMKEEFEYWY--PLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFID 663 (967)
T ss_dssp HHHHHHHHHHHHHC--SCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHH
T ss_pred HHHhhhHHHHHhhC--CCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHH
Confidence 2456677 456 8999999999999998554444211123579999999999999999999999999999
Q ss_pred hhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHH
Q 006368 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTK 446 (648)
Q Consensus 367 ~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~ 446 (648)
+++ .||+|++||||++.+++++|++|+++.+... .++++++.|+++++... . .|.. ......|+
T Consensus 664 ~i~-~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~~---------~--~~~~--~~~~~~D~ 727 (967)
T 1wz2_A 664 AIE-ENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAEY---------E--VKGN--VELKDIDR 727 (967)
T ss_dssp HHH-TTCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHSS---------C--CCCC--CCCCHHHH
T ss_pred HHH-HhChHHHHHHHHhCCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHhcC---------C--CCCc--ccCCHHHH
Confidence 999 7999999999997788999999999998876 56778888888776432 0 1111 12456789
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHhhccch
Q 006368 447 TLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMP 525 (648)
Q Consensus 447 ~l~~~l~~~~~~v~~a~d~~~~~~al~~i-~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~lr~l~~ll~P~~P 525 (648)
++++.++.+++.+.++|++|+|+.|+..+ +.+++.+|+|++..++ .+. .++..++.++++.++.||+||||
T Consensus 728 ~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~-----~~~---~~~~~~l~~~l~~l~~LLaP~~P 799 (967)
T 1wz2_A 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD---EAKRYVLRTLADVWVRLMAPFTP 799 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC---HHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccc-----hhH---HHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999876 5889999999998763 111 24556788899999999999999
Q ss_pred HHHHHHHHHhCC
Q 006368 526 SFSVEVNKQLNL 537 (648)
Q Consensus 526 ~~s~~i~~~L~~ 537 (648)
++|++||+.|+.
T Consensus 800 ~~aEeiw~~L~~ 811 (967)
T 1wz2_A 800 HICEELWEKLGG 811 (967)
T ss_dssp HHHHHHHHHSSC
T ss_pred hHHHHHHHhcCC
Confidence 999999999984
No 14
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.9e-71 Score=648.13 Aligned_cols=452 Identities=19% Similarity=0.323 Sum_probs=368.5
Q ss_pred CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 006368 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (648)
Q Consensus 19 ~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~ 98 (648)
.+++++||++++|||||.+||||+++ ++.+|+++||+||+||+|.|++|+|+||+||+.+|+++|++|.++++++.+.|
T Consensus 30 ~~~~k~~v~~~~Py~nG~lHiGHa~~-~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~ 108 (878)
T 2v0c_A 30 GGRGKQYVLVMFPYPSGDLHMGHLKN-YTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108 (878)
T ss_dssp C---EEEEEECCCCCSSCCBHHHHHH-HHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999 67799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCc
Q 006368 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (648)
Q Consensus 99 ~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (648)
++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|+
T Consensus 109 ~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~---------------- 172 (878)
T 2v0c_A 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVV---------------- 172 (878)
T ss_dssp HHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE----------------
T ss_pred HHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHh----------------
Confidence 999999999998 78899999999999999999999999999999999999999999998764
Q ss_pred cccccCCCCCccccCCCcCCC-CCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChH------------------
Q 006368 177 QCENCGKLLNATDLKDPKCKV-CRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN------------------ 237 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~-~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~------------------ 237 (648)
++.|++ ||++++.++++||||++++|+++|.+++++.+ ||.+
T Consensus 173 ---------------~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~----~p~~~~~~~~~wi~~s~g~~v~ 233 (878)
T 2v0c_A 173 ---------------EGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN----WPEKVKAMQRAWIGRSEGAEIL 233 (878)
T ss_dssp ---------------TTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB----SCHHHHHHHHHHHCEEEEEEEE
T ss_pred ---------------cCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcC----CCHHHHHHHHHHhccccCceEE
Confidence 234677 89999999999999999999999887764321 1211
Q ss_pred --------------------------------------------------------------------------------
Q 006368 238 -------------------------------------------------------------------------------- 237 (648)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (648)
T Consensus 234 f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (878)
T 2v0c_A 234 FPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALN 313 (878)
T ss_dssp EEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEEC
T ss_pred EEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEEC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006368 238 -------------------------------------------------------------------------------- 237 (648)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (648)
T Consensus 314 P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~ 393 (878)
T 2v0c_A 314 PATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTE 393 (878)
T ss_dssp TTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCB
T ss_pred CCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcC
Confidence
Q ss_pred ---HHHHHHHHHhc----------ccccceeeeccCCCcccCCcCC----------------------------------
Q 006368 238 ---AIQATHAWLKE----------GLKVRCITRDLKWGVPVPLERF---------------------------------- 270 (648)
Q Consensus 238 ---~~~~~~~~l~~----------gl~d~~IsR~~~WGi~vP~~~~---------------------------------- 270 (648)
++..+.++|.+ .|+|||||||+.||+|||.+.+
T Consensus 394 ~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl 473 (878)
T 2v0c_A 394 SEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPL 473 (878)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGG
T ss_pred HHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChh
Confidence 12223333332 3679999999999999996310
Q ss_pred --------------------CCceeeeeecccchHHHhc-cc-----c-chHHHhhcCCCCCcceEEEEeccccchh---
Q 006368 271 --------------------KEKVFYVWFDAPIGYVSIT-SC-----Y-TNEWEQWWKNPENVELYQFMGKDNVPFH--- 320 (648)
Q Consensus 271 --------------------~~~v~yVWfDa~~~yis~~-~~-----~-~~~~~~~w~~p~~~~~i~~~GkDi~~fH--- 320 (648)
+..|++||||+.+-|+... .. + .+.+..|| |.| +++.|+|+...|
T Consensus 474 ~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---~yi~G~d~~ilhl~y 548 (878)
T 2v0c_A 474 EAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWM--PVD---QYIGGVEHAVLHLLY 548 (878)
T ss_dssp GGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHC--SBS---EEECCGGGTTTHHHH
T ss_pred hhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCC--CCe---EEEechHHHHHHHHH
Confidence 1257889999976555321 00 1 13466666 567 799999997554
Q ss_pred HhHHHHHhhhcCC-C-cccCceEEeeceeec-----------------------------------------------CC
Q 006368 321 TVMFPSTLLGTGE-N-WTLMKTISVTEYLNY-----------------------------------------------ES 351 (648)
Q Consensus 321 ~i~~pa~l~a~g~-~-~~~p~~~~~hg~l~~-----------------------------------------------~G 351 (648)
+-+|..+|...|+ . -.|++++++||++.- +|
T Consensus 549 ~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 628 (878)
T 2v0c_A 549 SRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDG 628 (878)
T ss_dssp HHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTS
T ss_pred HHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCC
Confidence 5568888887773 1 246699999999963 89
Q ss_pred -------ccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCC
Q 006368 352 -------GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424 (648)
Q Consensus 352 -------~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~ 424 (648)
+|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+..+ ..+.+++.|++......+..
T Consensus 629 ~~~~~~~~KMSKSkGNvVdP~diI~-~yGADalRl~ll~~~~~~~D~~fs~~~v~~~--~~~l~Rl~n~~~~~~~~~~~- 704 (878)
T 2v0c_A 629 TLHLWKPAVMSKSKGNGVMVGPFVK-EQGADIARITILFAAPPENEMVWTEEGVQGA--WRFLNRIYRRVAEDREALLE- 704 (878)
T ss_dssp SEEEEEEEECSGGGTCCCBHHHHHH-HSCHHHHHHHHHHHSCTTSCEEECHHHHHHH--HHHHHHHHHHHHHHHHHHHT-
T ss_pred CchhhhHHHhhccCCCcccHHHHHH-HcCccHHHHHHhccCCCCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhcccc-
Confidence 899999999999999999 7999999999998789999999999999876 46777777777655443211
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHH
Q 006368 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSI 504 (648)
Q Consensus 425 ~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~ 504 (648)
.. ..++ .......|++++..+..+++.+.++|++|+|+.|+..+++|++.+|+|.+.. .. .
T Consensus 705 ---~~-~~~~---~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~--------~~-~--- 765 (878)
T 2v0c_A 705 ---TS-GVFQ---AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR--------PV-T--- 765 (878)
T ss_dssp ---CC-CCCC---GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC--------CS-C---
T ss_pred ---cc-cccC---cccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc--------hh-H---
Confidence 00 0111 1124568999999999999999999999999999999999999999997541 11 1
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHhC
Q 006368 505 VMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (648)
Q Consensus 505 vl~~~~~~lr~l~~ll~P~~P~~s~~i~~~L~ 536 (648)
.++.++++.+..||+||||++|++||++||
T Consensus 766 --~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 766 --PVYRTAIRYYLQMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp --HHHHHHHHHHHHHHTTTSHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHcccchHHHHHHHHHcC
Confidence 356678999999999999999999999998
No 15
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=7.1e-72 Score=646.15 Aligned_cols=461 Identities=17% Similarity=0.274 Sum_probs=349.0
Q ss_pred CCCCCCC--CCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHH
Q 006368 12 PPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89 (648)
Q Consensus 12 ~~~~~~~--~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e 89 (648)
...|.+. .++++|||++++|||||.+||||+++ ++.+|+++||+||+||+|++++|+|+||+||+.+|++.|++|.+
T Consensus 41 ~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~-~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~ 119 (880)
T 4arc_A 41 KRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRN-YTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAP 119 (880)
T ss_dssp TTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHH-HHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHH
T ss_pred cCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHH-HHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHH
Confidence 3344443 35678999999999999999999998 67799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccc--cccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCc
Q 006368 90 ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167 (648)
Q Consensus 90 ~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~ 167 (648)
+++++.+.|++++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|+++|++.+|
T Consensus 120 ~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev-------- 191 (880)
T 4arc_A 120 WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQV-------- 191 (880)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-----------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhh--------
Confidence 999999999999999999998 7899999999999999999999999999999999999999999997654
Q ss_pred cccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH--
Q 006368 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW-- 245 (648)
Q Consensus 168 c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (648)
++++|++||.+|+.+++++|||++++|+++|+++++..+ .||.+++.+..+|
T Consensus 192 -----------------------~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~---~wp~~v~~~~~~wig 245 (880)
T 4arc_A 192 -----------------------IDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLD---HWPDTVKTMQRNWIG 245 (880)
T ss_dssp --------------------------------------CEEEEEECGGGGHHHHHHHGGGCT---TSCHHHHHHHHHHHC
T ss_pred -----------------------hcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcc---cccHHHHHHHHhhhc
Confidence 345678899999999999999999999999999876542 1333222222211
Q ss_pred --------------------------------------------------------------------------------
Q 006368 246 -------------------------------------------------------------------------------- 245 (648)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (648)
T Consensus 246 ~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 325 (880)
T 4arc_A 246 RSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 325 (880)
T ss_dssp EEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEE
T ss_pred cccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeecccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006368 246 -------------------------------------------------------------------------------- 245 (648)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (648)
T Consensus 326 g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~ 405 (880)
T 4arc_A 326 GFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG 405 (880)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSG
T ss_pred CcEEecCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCc
Confidence
Q ss_pred -----------------Hhc----------ccccceeeeccCCCcccCCcCC----------------------------
Q 006368 246 -----------------LKE----------GLKVRCITRDLKWGVPVPLERF---------------------------- 270 (648)
Q Consensus 246 -----------------l~~----------gl~d~~IsR~~~WGi~vP~~~~---------------------------- 270 (648)
|++ .|+|||||||+.||.|+|.+.+
T Consensus 406 ~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~ 485 (880)
T 4arc_A 406 EFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITS 485 (880)
T ss_dssp GGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSC
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCC
Confidence 110 1679999999999999996421
Q ss_pred --------------------CCceeeeeecccchHHHhc-cc-----c-chHHHhhcCCCCCcceEEEEeccccchh---
Q 006368 271 --------------------KEKVFYVWFDAPIGYVSIT-SC-----Y-TNEWEQWWKNPENVELYQFMGKDNVPFH--- 320 (648)
Q Consensus 271 --------------------~~~v~yVWfDa~~~yis~~-~~-----~-~~~~~~~w~~p~~~~~i~~~GkDi~~fH--- 320 (648)
+..|+++|||+.+-|+..+ .. + .+.+..|+ |.| +++.|.|+...|
T Consensus 486 pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD---~yigG~EHailHlly 560 (880)
T 4arc_A 486 PIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWL--PVD---IYIGGIEHAIMHLLY 560 (880)
T ss_dssp HHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHC--SEE---EEECCGGGTTTHHHH
T ss_pred chHhCccceeeccCCCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccC--Cce---EeecchhhHHHHHHH
Confidence 1257899999986555432 11 1 13455566 566 899999997666
Q ss_pred HhHHHHHhhhcCCC--cccCceEEeeceee--------cCCc------------------------------------cc
Q 006368 321 TVMFPSTLLGTGEN--WTLMKTISVTEYLN--------YESG------------------------------------KF 354 (648)
Q Consensus 321 ~i~~pa~l~a~g~~--~~~p~~~~~hg~l~--------~~G~------------------------------------KM 354 (648)
+-+|..+|..+|+- -.|++++++||+++ .+|+ ||
T Consensus 561 aRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKM 640 (880)
T 4arc_A 561 FRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKM 640 (880)
T ss_dssp HHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccc
Confidence 56788888877741 13569999999994 4566 99
Q ss_pred cccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCC
Q 006368 355 SKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434 (648)
Q Consensus 355 SKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p 434 (648)
|||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+..+ ..+.+++.|++.+....... . ..+
T Consensus 641 SKSkGNvVdP~diIe-kYGADalRl~ll~~~~~~~dl~~s~~~ie~a--~rfl~rlwn~~~~~~~~~~~------~-~~~ 710 (880)
T 4arc_A 641 SKSKNNGIDPQVMVE-RYGADTVRLFMMFASPADMTLEWQESGVEGA--NRFLKRVWKLVYEHTAKGDV------A-ALN 710 (880)
T ss_dssp CTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTCCC------C-CCC
T ss_pred cCcCCCCCCHHHHHH-HcCchHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhcccc------c-ccc
Confidence 999999999999999 7999999999999878999999999999887 46788888888776542110 0 011
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHH
Q 006368 435 DANGAESHQLTKTLAEKVGKYVEQYLEAME-KVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLV 513 (648)
Q Consensus 435 ~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d-~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~vl~~~~~~l 513 (648)
.......|++++..++.+++++.++|+ +|+|+.|+..+++|++..|+|. +.+. . ...++.+++
T Consensus 711 ---~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~---------~~~~-~---~~~~l~~~l 774 (880)
T 4arc_A 711 ---VDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP---------TDGE-Q---DRALMQEAL 774 (880)
T ss_dssp ---STTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC---------CSSH-H---HHHHHHHHH
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh---------ccch-H---HHHHHHHHH
Confidence 112456789999999999999999997 8999999999999998887652 1111 1 234566788
Q ss_pred HHHHHHhhccchHHHHHHHHHhCCC
Q 006368 514 HLLACLLEPFMPSFSVEVNKQLNLQ 538 (648)
Q Consensus 514 r~l~~ll~P~~P~~s~~i~~~L~~~ 538 (648)
+.+..||+||||++|++||+.||..
T Consensus 775 ~~ll~LLaPf~PhiaEElW~~Lg~~ 799 (880)
T 4arc_A 775 LAVVRMLNPFTPHICFTLWQELKGE 799 (880)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhccHHHHHHHHHHcCCC
Confidence 9999999999999999999999864
No 16
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.2e-58 Score=503.53 Aligned_cols=360 Identities=15% Similarity=0.106 Sum_probs=275.0
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCC
Q 006368 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (648)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~ 85 (648)
.+||+|++|+|.. ++.++|||+ |+|||.+||||+|+ +|.+|+++||+|+.||+|.|++|+||+|+||+.+|+++|.
T Consensus 7 t~t~~~~~f~p~~~~~v~~yv~g--Pt~y~~~HiGHar~-~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~ 83 (461)
T 1li5_A 7 TLTRQKEEFKPIHAGEVGMYVCG--ITVYDLCHIGHGRT-FVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (461)
T ss_dssp TTTTEEEECCCSSTTEEEEEECC--CBSSSCCBHHHHHH-HHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred CCCCCccccccCCCCCeeEEEcC--CcCCCCCcccccHH-HHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCC
Confidence 4789999999974 455678776 45569999999998 6889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCccc-ccccCCCchHHHHHHHHHHHHHHHCCCEEEc-eEeeeeccCcCcccccccccccC
Q 006368 86 SPKEICDKYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTC 163 (648)
Q Consensus 86 ~~~e~~~~~~~~~~~~~~~l~i~~-D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~c 163 (648)
+|+++++++.+.|++++++|||.+ |.|.||| +|...+++++++|.++|++|++ ++.+|||+++...
T Consensus 84 ~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~---------- 151 (461)
T 1li5_A 84 SFVAMVDRMIAEMHKDFDALNILRPDMEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPT---------- 151 (461)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTT----------
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCccccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccccc----------
Confidence 999999999999999999999998 8899998 4999999999999999999999 8999999886211
Q ss_pred CCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHH
Q 006368 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQAT 242 (648)
Q Consensus 164 p~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 242 (648)
+| +.||+.+ .++. +|+.++.. ..++++ ++..|...
T Consensus 152 ----------yg---~lsg~~~--~~l~------~g~rv~~~------------------~~k~~p~Df~lwk~~----- 187 (461)
T 1li5_A 152 ----------YG---VLSRQDL--DQLQ------AGARVDVV------------------DDKRNPMDFVLWKMS----- 187 (461)
T ss_dssp ----------TT---TTTTC------------------------------------------CCSTTCEEEEEEC-----
T ss_pred ----------cc---cccCCCH--HHhh------cCCcccch------------------hcccCccceEEEccC-----
Confidence 12 2344422 1221 12222110 011221 11112110
Q ss_pred HHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHh
Q 006368 243 HAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTV 322 (648)
Q Consensus 243 ~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i 322 (648)
.+-.++++.+||+++|+| +++. ...+.+||..+.+ ||++|+|+++||++
T Consensus 188 --------~~g~~~w~s~WG~g~PgW----------hiec----------sam~~~~lg~~~d---ih~gG~Dl~fpH~~ 236 (461)
T 1li5_A 188 --------KEGEPSWPSPWGAGRPGW----------HIEC----------SAMNCKQLGNHFD---IHGGGSDLMFPHHE 236 (461)
T ss_dssp --------CTTSCCBCCTTCSEEECS----------SHHH----------HHHHHHHHCSSEE---EEECBGGGTTTHHH
T ss_pred --------CCCCCcccCCCCCcCCCc----------cchh----------HHHHHHHhCCCce---EEeccCccCchHHH
Confidence 011246678999999965 4321 1234567754333 89999999999999
Q ss_pred HHHHHhhhc-CCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHH
Q 006368 323 MFPSTLLGT-GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (648)
Q Consensus 323 ~~pa~l~a~-g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~ 401 (648)
+|||+++++ |. ++|+.+++||||+++|+|||||+||+|+|.++++ .|++|++|||+++ .++.+|++||++.+.++
T Consensus 237 ~~~aq~~a~~g~--~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~-~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~ 312 (461)
T 1li5_A 237 NEIAQSTCAHDG--QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMS-GHYRSQLNYSEENLKQA 312 (461)
T ss_dssp HHHHHHHHHSSS--CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHT-TSCHHHHHHHHHS-SCTTSCEEECHHHHHHH
T ss_pred HHHHHHHHhcCC--CCCcEEEEeeEEEECCeEccccCCCccChhHHhh-hCCHHHHHHHHHc-CCcCCCCCCCHHHHHHH
Confidence 999999886 64 4667777779999999999999999999999998 7999999999997 78899999999999886
Q ss_pred hhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 006368 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISS 480 (648)
Q Consensus 402 ~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~ 480 (648)
.| ..+++.|++ ++ .++.++ . + .+..+.+.+.++| |+|+++.|+..|++|++
T Consensus 313 ~~--~l~rl~n~~-------~~-----~~~~~~----~-----d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~ 364 (461)
T 1li5_A 313 RA--ALERLYTAL-------RG-----TDKTVA----P-----A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAR 364 (461)
T ss_dssp HH--HHHHHHHHH-------TT-----CCTTSC----C-----C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHH-------HH-----hhcCCC----H-----H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 32 234444444 32 111111 0 1 2445677899999 99999999999999999
Q ss_pred HHHHHHHh
Q 006368 481 EGNAYLQE 488 (648)
Q Consensus 481 ~~N~yi~~ 488 (648)
.+|+|++.
T Consensus 365 ~~N~~~~~ 372 (461)
T 1li5_A 365 EVNRLKAE 372 (461)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999965
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1e-57 Score=493.57 Aligned_cols=350 Identities=14% Similarity=0.117 Sum_probs=261.0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
.++|+|++|+| .++.++|||+ |||||++||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++
T Consensus 26 t~~~~~~~f~p-~~~v~~y~~g--Pt~yg~~HiGHar~-~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~ 101 (414)
T 3c8z_A 26 SADRQVRPVTP-GPTATMYVCG--ITPYDATHLGHAAT-YLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGID 101 (414)
T ss_dssp TTTTEEEECCC-CSEEEEEECC--CCTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCC
T ss_pred eccCCcccccC-CCCceEEeCC--CcCCCCcCccccHH-HHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCC
Confidence 46788999999 6666677664 67889999999998 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcc-cccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCC
Q 006368 87 PKEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~-~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (648)
|+++++++.+.|++++++|||+ +|.|.|||+ |...++++|++|.++|+||+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~---------------------- 157 (414)
T 3c8z_A 102 WRTLGDRETQLFREDMAALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDA---------------------- 157 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccCC----------------------
Confidence 9999999999999999999999 999999985 889999999999999999987621
Q ss_pred CccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 006368 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW 245 (648)
Q Consensus 166 ~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (648)
++.++||++++|.+.+. ......+.+.++
T Consensus 158 ----------------------------------------~e~~~~f~~~~~~~~g~-----------l~~~~~~~~~~~ 186 (414)
T 3c8z_A 158 ----------------------------------------EYPDVYFRADATAQFGY-----------ESGYDRDTMLTL 186 (414)
T ss_dssp ----------------------------------------SCCCEEECTTSSTTTTT-----------TTCCCHHHHHHH
T ss_pred ----------------------------------------cCCCEEEEchhhhhhHh-----------hcCCCHHHHHHH
Confidence 12234445544432210 000001222333
Q ss_pred Hhccccc--ceee---ec-cCCCcccCCcCCCCceeeeeecccchHHHhccccc----hHHHhhcCCCCCcceEEEEecc
Q 006368 246 LKEGLKV--RCIT---RD-LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKD 315 (648)
Q Consensus 246 l~~gl~d--~~Is---R~-~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~----~~~~~~w~~p~~~~~i~~~GkD 315 (648)
+.+...+ .+.+ +| ..||+++|++. .| ||++++- ..+|. ..+.+||..|.| +|++|+|
T Consensus 187 ~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~-------~W-da~~g~g--~pgWhiec~a~~~~~~g~~~d---i~~~G~D 253 (414)
T 3c8z_A 187 FAERGGDPDRPGKSDQLDALLWRAERPGEP-------SW-PSPFGRG--RPGWHVECSAIALTRIGTGLD---IQGGGSD 253 (414)
T ss_dssp HHHTTCCTTCTTCSSTTCEEEEEECCTTSC-------CB-CCTTCSE--EECHHHHHHHHHHHHTCSCEE---EEEEEGG
T ss_pred HhhccccccccccCCcchhhhcCCCCCCCC-------CC-CCCCCCC--CCCccchhHHHHHHhcCCCce---EEEeccc
Confidence 3211011 1112 22 34999999752 48 8887652 12342 346678855554 8999999
Q ss_pred ccchhHhHHHHHhhhc-CCCcccCceEEee-ceeecCCccccccCCcccChhhhhhcC-CCchhHHHHHhhcCCCCCCcc
Q 006368 316 NVPFHTVMFPSTLLGT-GENWTLMKTISVT-EYLNYESGKFSKSKGIGVFGNDAKDTN-IPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 316 i~~fH~i~~pa~l~a~-g~~~~~p~~~~~h-g~l~~~G~KMSKS~gN~I~~~~~l~~~-~~~d~lR~~ll~~~~~~~d~~ 392 (648)
|++||+++||++++++ |. ++|.++++| |||+++|+|||||+||+|+|.++++ . |++|++||||++ +++.+|++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~--~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~-~g~g~D~lR~~ll~-~~~~~d~~ 329 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGE--RRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRA-QGVDPSAIRLGLFS-GHYREDRF 329 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCC--SCSEEEEEEECCBC-------------CBHHHHHH-TTCCHHHHHHHHHT-SCTTSCBC
T ss_pred cccHHHHHHHHHHHHhcCC--CCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhh-ccCCcchheeEEEe-cCcCCCCC
Confidence 9999999999999997 64 356778888 8999999999999999999999998 6 999999999998 88999999
Q ss_pred ccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHH
Q 006368 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQG 471 (648)
Q Consensus 393 fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~a 471 (648)
||++.+.++.| ..++++|+++|+ ++ + . +..+.+++.++| |+|+++.|
T Consensus 330 fs~~~l~~~~~--~l~~l~n~~~~~------------~~--~-----~-----------~~~~~~~v~~a~~d~~~~~~A 377 (414)
T 3c8z_A 330 WSNEVLDEANA--RLARWRSATALP------------EA--P-----D-----------ATDVIARVRQYLADDLDTPKA 377 (414)
T ss_dssp CCHHHHHHHHH--HHHHHHHHHTSS------------CB--S-----C-----------CHHHHHHHHHHHHBTCCHHHH
T ss_pred cCHHHHHHHHH--HHHHHHHHHHhc------------cc--h-----h-----------HHHHHHHHHHHHHhcCCHHHH
Confidence 99999998754 367888876543 11 1 0 134567888999 89999999
Q ss_pred HHHHHHHHHHHHH
Q 006368 472 LKTAMSISSEGNA 484 (648)
Q Consensus 472 l~~i~~l~~~~N~ 484 (648)
+..|+++++.+|+
T Consensus 378 l~~i~~~~~~~n~ 390 (414)
T 3c8z_A 378 LAALDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=4.9e-57 Score=488.51 Aligned_cols=371 Identities=17% Similarity=0.180 Sum_probs=251.2
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCC----------cccchHH
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGT----------DEYGTAT 76 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~----------D~~G~ki 76 (648)
.+||+|++|+|.. +.++|||+ |||||.+||||||+ +|.+|+++||+|++||+|.|++|+ |+||+||
T Consensus 29 tltr~ke~f~p~~-~v~~Yvcg--PTvYg~~HIGHar~-~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI 104 (501)
T 3sp1_A 29 TRTKDFSELTNFE-NVKVYACG--PTVYNYAHIGNFRT-YIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKV 104 (501)
T ss_dssp TTTTEEEEECCCS-CEEEEECC--CBCSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------
T ss_pred CCCCccccccccC-cceEEeCC--CcCCCCcchhhhHH-HHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHH
Confidence 4789999999987 66677655 77889999999998 788999999999999999999765 5559999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCccccc
Q 006368 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (648)
Q Consensus 77 ~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (648)
+.+|+++|++|+++++++.+.|++++++|||++|.|.+ +.++|...++++|++|+++|+||++++++|||+++-..
T Consensus 105 ~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~~--- 180 (501)
T 3sp1_A 105 AKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKS--- 180 (501)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCTT---
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccCC---
Confidence 99999999999999999999999999999999998875 46899999999999999999999999999999987321
Q ss_pred ccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCC
Q 006368 157 RLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWS 235 (648)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~ 235 (648)
+|.. +|+.+. +++ .+|..++... .++++ ++..|.
T Consensus 181 -----------------yG~l---s~~~~~-~~~------~~g~r~~~~~------------------~K~~p~Df~lWk 215 (501)
T 3sp1_A 181 -----------------YGEM---AGIDLI-DKD------MTLPRVDVDK------------------FKRNKTDFVLWF 215 (501)
T ss_dssp -----------------TTTT---TC------------------------------------------CCSSTTCEEEEE
T ss_pred -----------------cccc---CCCChh-hhh------ccCCccCccc------------------ccCCchhhHhcC
Confidence 2221 111110 011 1122221100 01111 111121
Q ss_pred hH-HHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEec
Q 006368 236 QN-AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGK 314 (648)
Q Consensus 236 ~~-~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~Gk 314 (648)
+. .. ..+. ++.+.+||...|+|- .+++....+||+.+.| ||++|+
T Consensus 216 ~~p~~-------~~~~----~~W~spwG~GrPGWh--------------------iEcsam~~~~lg~~~D---IH~gG~ 261 (501)
T 3sp1_A 216 TNSKF-------KDQE----MKWDSPWGFGYPSWH--------------------LECAAMNLEYFKDALD---IHLGGV 261 (501)
T ss_dssp ECCC----------------CCBCCTTCSEEECHH--------------------HHHHHHHHHHTTTCCC---EEEEEG
T ss_pred CCCCC-------CCCC----ceecCCCCCCCCCch--------------------HHHHHHHHHHcCCCce---EEeecc
Confidence 10 00 0112 223567888888762 1334456788976666 899999
Q ss_pred cccchhHhHHHHHhhhcCCCcccCceEEee-ceeecCCccccccCCcccChhhhhhcC-CCchhHHHHHhhcCCCCCCcc
Q 006368 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVT-EYLNYESGKFSKSKGIGVFGNDAKDTN-IPVEVWRYYLLTNRPEVSDTL 392 (648)
Q Consensus 315 Di~~fH~i~~pa~l~a~g~~~~~p~~~~~h-g~l~~~G~KMSKS~gN~I~~~~~l~~~-~~~d~lR~~ll~~~~~~~d~~ 392 (648)
|++|||+.+|+|+.+++... ++.++++| |||+++|+|||||+||||+|.++++ . |++|++||||++. ++.+|++
T Consensus 262 DLifpHheneiAqs~a~~g~--~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~-~gyg~d~lR~~lls~-~yr~~l~ 337 (501)
T 3sp1_A 262 DHIGVHHINEIAIAECFLNK--KWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLED-QNFSPLDFRYLCLTS-HYRNQLK 337 (501)
T ss_dssp GGTTTHHHHHHHHHHHHHTS--CCCSEEEEECCEECC----------CCCHHHHHH-TTCCHHHHHHHHHTS-CTTSCEE
T ss_pred ccccchHHHHHHHHHHccCC--CCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHh-cCCCHHHHHHHHHhc-cCCCCCc
Confidence 99999999999999987543 45666666 9999999999999999999999998 6 9999999999985 8889999
Q ss_pred ccHHHHHHHhhH--HHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHH
Q 006368 393 FTWADLQAKSNN--ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLK 469 (648)
Q Consensus 393 fs~~~~~~~~n~--~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~ 469 (648)
||++.+.++.+. +|.++|.|+++|+........ ...+. . .. ...+..+.+.+.+|| |+|+++
T Consensus 338 fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~--~~~~~---~--~~--------~~~~~~~~~~f~~am~dDlnt~ 402 (501)
T 3sp1_A 338 FSLDNLQASKIARENLINKLSYFYESLDPVDLNTL--NKDLK---N--FG--------FSVEKEYYDSFVEKISFDLNVA 402 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH--HSCTT---S--CS--------SHHHHHHHHHHHHHHHBTSCHH
T ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccc--ccccc---c--hh--------hhhHHHHHHHHHHHHHhccCcH
Confidence 999999998776 778999999887643322100 00000 0 00 112345667899999 799999
Q ss_pred HHHHHHHHHHHHHH
Q 006368 470 QGLKTAMSISSEGN 483 (648)
Q Consensus 470 ~al~~i~~l~~~~N 483 (648)
.|+..|+++++.+|
T Consensus 403 ~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 403 QGLALLWEIIKSDN 416 (501)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-53 Score=459.56 Aligned_cols=361 Identities=17% Similarity=0.169 Sum_probs=265.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCC
Q 006368 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (648)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~ 86 (648)
.+||+|++|.|..++ ++-+..+.|||||.+||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++
T Consensus 10 tlt~~ke~f~p~~~~-~v~~YvcGPtvy~~~HIGHaR~-~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~ 87 (462)
T 3tqo_A 10 SLTKQKEIFKPIESG-KVKLYVCGMTVYDYMHIGHGRS-WIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKES 87 (462)
T ss_dssp TTTTEEEECCCSSTT-EEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSC
T ss_pred cCCCceeccccCCCC-eEEEEeCCCcCCCCCchhhhHH-HHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCC
Confidence 478999999997543 3344445679999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCccccccc-CCCchHHHHHHHHHHHHHHHCCCEEEc-eEeeeeccCcCcccccccccccCC
Q 006368 87 PKEICDKYHVIHKDVYKWFDISFDNFG-RTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTCP 164 (648)
Q Consensus 87 ~~e~~~~~~~~~~~~~~~l~i~~D~f~-rT~~~~~~~~v~~~~~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~cp 164 (648)
|+++++++.+.|.+++++|||++|.+. |+| +|...++++|++|+++|++|++ .+.+|||+++...+..
T Consensus 88 ~~e~a~~~~~~f~~d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~-------- 157 (462)
T 3tqo_A 88 PAALAERFIQILHEDEKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGK-------- 157 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTT--------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccccccc--------
Confidence 999999999999999999999997654 766 8999999999999999999999 6899999987543321
Q ss_pred CCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCC-CCCCCChHHHHHHH
Q 006368 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (648)
Q Consensus 165 ~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (648)
. +++ +..++.. |..+.... .+.++ ++.-|...
T Consensus 158 ------------L---s~~--~~~~~~~------g~r~~~~~------------------~K~~p~DF~LWK~~------ 190 (462)
T 3tqo_A 158 ------------L---SHR--HLDELQA------GARVEVSD------------------SKRDPLDFVLWKKA------ 190 (462)
T ss_dssp ------------T---TTC--SCC------------------------------------CCSSTTCEEEEEEC------
T ss_pred ------------c---cCC--ChHHhhc------cCcccccc------------------ccCCccccceeeec------
Confidence 0 000 0011110 11111000 01111 11112210
Q ss_pred HHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhH
Q 006368 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (648)
Q Consensus 244 ~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~ 323 (648)
+.|.+-| +.+||...|+|. .+++....++...+.| ||..|.|++|||+..
T Consensus 191 ---k~~ep~W----~spwG~GrPGWH--------------------iEcsam~~~~lG~~~d---ih~gG~Dl~FpHhen 240 (462)
T 3tqo_A 191 ---KPGEPKW----DSPWGEGRPGWH--------------------IECSAMSSSILGQPFD---IHGGGLDLKFPHHEN 240 (462)
T ss_dssp ---CTTSCCB----CCTTCSEEECHH--------------------HHHHHHHHHHHCSSEE---EEEEEGGGTTTHHHH
T ss_pred ---CCCCCcc----cCCCCCCCCCCc--------------------eehHHHHHHhcCCCeE---EEccccccccHHHHh
Confidence 1233344 678999999883 1222233334432334 899999999999999
Q ss_pred HHHHhhhcCCCcccCceEEeeceeecCCccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 324 ~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
..|+..++.-. +++++++++|+|+++|+|||||+||+|+|.++++ .|++|++|||+++ .++.+|++||++.+.++
T Consensus 241 eiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~-~~g~dalR~~lls-~~yr~~l~fs~~~l~~a-- 315 (462)
T 3tqo_A 241 EIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALK-ESDVEVLRYFLLS-GHYRNPLSYSKENLENG-- 315 (462)
T ss_dssp HHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHH-SCTTSCEEECHHHHHHH--
T ss_pred HHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHh-hcChHHhhhhhcc-CCCCCCcCcCHHHHHHH--
Confidence 99988765322 3345555559999999999999999999999998 7999999999997 57789999999999887
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~-d~~~~~~al~~i~~l~~~~ 482 (648)
....+++.|+++++ .. . .+ ..+..+.+.+.++| |+|+++.|+..|.++++.+
T Consensus 316 ~~~l~rl~~~~~~~----~~-----~---~~---------------~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~ 368 (462)
T 3tqo_A 316 RLALERFYLALRGL----PV-----V---NH---------------EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREI 368 (462)
T ss_dssp HHHHHHHHHHHTTC----CC-----------------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----hh-----c---cc---------------hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 34455555554321 10 0 00 01234567889999 7999999999999999999
Q ss_pred HHHHHh
Q 006368 483 NAYLQE 488 (648)
Q Consensus 483 N~yi~~ 488 (648)
|.+++.
T Consensus 369 n~~~~~ 374 (462)
T 3tqo_A 369 NRFRDN 374 (462)
T ss_dssp HHHHHT
T ss_pred hhhhcc
Confidence 998765
No 20
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=3.2e-43 Score=395.98 Aligned_cols=373 Identities=13% Similarity=0.075 Sum_probs=265.5
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHH--------------------------
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT-------------------------- 76 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki-------------------------- 76 (648)
++.|+.+.|||||++||||+|+ +|.+|+++||+|..||+|.++.+++|.|..+
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~-~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRN-IALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHH-HHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHH-HHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 6899999999999999999999 5679999999999999999987776665321
Q ss_pred --HH------------------HHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHHCCC
Q 006368 77 --ET------------------KAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNW 136 (648)
Q Consensus 77 --~~------------------~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~ 136 (648)
.. ++.+.|.. +++++.+.+.|++++++|||++|.|.+||+..|...+++++++|.++|+
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCC
Confidence 11 12445554 9999999999999999999999999999988889999999999999999
Q ss_pred EEE---ceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeecc--cee
Q 006368 137 LIE---NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN--HLF 211 (648)
Q Consensus 137 iy~---~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~--~~f 211 (648)
+|. +.+.|+||..++.|..+. ++ |..++.+... .||
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~~-------------------------------~l--------~~~vi~ksdG~~~Y~ 302 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPGL-------------------------------ED--------PFFVLLRSNGTATYY 302 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCSC-------------------------------SC--------CEEEEECTTSCBCHH
T ss_pred cccCcccCcCCCEEEechhcCCCC-------------------------------CC--------CceEEEecCCceEEe
Confidence 993 355677776655543211 00 1112222221 222
Q ss_pred eechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccc
Q 006368 212 LDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSC 291 (648)
Q Consensus 212 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~ 291 (648)
++-.+|.-+....+++......|... .+.+.|. .||+++|..+ .+++||||.+...+|+...
T Consensus 303 ~~D~a~~~~Kl~l~~~~~~~~~~~~p----------~~r~~w~-----~~g~~~~~~~-~~~~iyV~g~~h~~~~~~~-- 364 (592)
T 1iq0_A 303 AKDIAFQFWKMGILEGLRFRPYENPY----------YPGLRTS-----APEGEAYTPK-AEETINVVDVRQSHPQALV-- 364 (592)
T ss_dssp HHHHHHHHHHTTSSCCCEEEECCCSS----------CTTCEEE-----EEEEEECCCC-CSEEEEEEESSSCCCHHHH--
T ss_pred cchHHHHHHHhhhhhhhhhhhhhcCc----------chhhccc-----ccCcccCCCC-CCEEEEEEeccHHHHHHHH--
Confidence 22111111100000000000001100 0122332 6899999732 6899999987655554321
Q ss_pred cchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCccc-CceEEeeceeecCCccccccCCcccChhhhhhc
Q 006368 292 YTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL-MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDT 370 (648)
Q Consensus 292 ~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~-p~~~~~hg~l~~~G~KMSKS~gN~I~~~~~l~~ 370 (648)
.+++.++|.+++. --.++.||||+++|+|||||+||+|++.|+++
T Consensus 365 ---------------------------------~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~- 410 (592)
T 1iq0_A 365 ---------------------------------RAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE- 410 (592)
T ss_dssp ---------------------------------HHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHH-
T ss_pred ---------------------------------HHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHH-
Confidence 2445556654210 12456779999999999999999999999998
Q ss_pred C-------------------------CCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCC
Q 006368 371 N-------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPP 425 (648)
Q Consensus 371 ~-------------------------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~ 425 (648)
. +++|++|||+++..+ .+|++|+++.+.+. +++..+++++.+.|+.++++|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~-~~~~~Fd~d~~~~~-~~~~~~ylqya~aR~~sil~k-- 486 (592)
T 1iq0_A 411 EATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEP-KKQIDFRYQEALSF-EGDTGPYVQYAHARAHSILRK-- 486 (592)
T ss_dssp HHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCT-TSCEEECHHHHHCS-SSSSHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCC-CCCCeecHHHHHHH-hccchHHHHHHHHHHHHHHHh--
Confidence 5 999999999998655 79999999999986 456888999999999999998
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhh-----hhhcc
Q 006368 426 GQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF-----WKLYK 496 (648)
Q Consensus 426 ~~~~~~~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~p-----w~l~k 496 (648)
+..+..+.. ....+.+.+|+..+..+.+.+.+++++++++.++..+++|++.+|+|++.++| |.+..
T Consensus 487 --~~~~~~~~~--~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~ 558 (592)
T 1iq0_A 487 --AGEWGAPDL--SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTA 558 (592)
T ss_dssp --HCCCCCCCG--GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTS
T ss_pred --hcccCCCcc--CCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCC
Confidence 222212211 11245678899999999999999999999999999999999999999999987 87764
No 21
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=8e-43 Score=393.61 Aligned_cols=376 Identities=15% Similarity=0.077 Sum_probs=275.3
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchH------------------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA------------------------ 75 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~k------------------------ 75 (648)
.++++.|..+.|+|||++||||+|++ |.+|+++|++|..||+|.++.+++|+|..
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~-iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~ 195 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNA-ILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRE 195 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHH-HHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHH-HHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcc
Confidence 45679999999999999999999995 66999999999999999999988887665
Q ss_pred ---------------HHHHHHHcC--------------------CCHHHHHHHHHHHHHHHHhhcCcccccccCCCchHH
Q 006368 76 ---------------TETKAMEDN--------------------CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120 (648)
Q Consensus 76 ---------------i~~~A~~~g--------------------~~~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~ 120 (648)
+...|++.+ ..++++++.+.+.|++++++|||++|.|.++|+..|
T Consensus 196 ~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~ 275 (629)
T 2zue_A 196 RGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVR 275 (629)
T ss_dssp HTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHH
T ss_pred cccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCcccc
Confidence 333344333 344899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHCCCEE---EceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCC
Q 006368 121 TEACQAIFKKLLDNNWLI---ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKV 197 (648)
Q Consensus 121 ~~~v~~~~~~L~~~G~iy---~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~ 197 (648)
...+++++++|.++|++| ++++.|+||..++.|..+..+
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~-------------------------------------- 317 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN-------------------------------------- 317 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC--------------------------------------
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc--------------------------------------
Confidence 999999999999999999 466778888887766432100
Q ss_pred CCCCcEEeecc--ceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcC-CCCce
Q 006368 198 CRNAPQIRDTN--HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER-FKEKV 274 (648)
Q Consensus 198 ~g~~~~~~~~~--~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~-~~~~v 274 (648)
|..++.+.+. .||++-.+|..+....+ ++.+ + .++...+.++| ++||+++|+.. ..+++
T Consensus 318 -~~~v~~ksdG~~~Y~~~Diay~~~K~~ll--~~~f---r----------~~~~~~~~~~~--~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 318 -PILVLRRSDGTATYTGKDIAYHLWKFGKI--DVDL---L----------YKEWDSTTWTT--APDGKSMPNKFGNANIV 379 (629)
T ss_dssp -CEEEEECTTSCBCHHHHHHHHHHHHTTCS--CCCC---E----------EEECSSSCEEE--EEEEEECTTSSCCCSEE
T ss_pred -CceEEEecCCccccchhhHHHHHHHhhcc--cccc---c----------CCccccccccc--CCCCCCCCCccCCCCcE
Confidence 1122223222 23333222222100001 0110 0 00000123343 58999999521 25788
Q ss_pred eeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCc--eEEeeceeecCCc
Q 006368 275 FYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK--TISVTEYLNYESG 352 (648)
Q Consensus 275 ~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~--~~~~hg~l~~~G~ 352 (648)
||||....-+|+.. ..+++.++|.++. ++ .++.||+|+++|+
T Consensus 380 IyV~g~~q~~~~~~-----------------------------------l~~~l~~lG~~~~-~~~~~h~~~g~V~~~~~ 423 (629)
T 2zue_A 380 INVIGAEQKHPQLA-----------------------------------IKYALQLLGFEDA-AANLYHLAYEHVERPEG 423 (629)
T ss_dssp EEEEEGGGHHHHHH-----------------------------------HHHHHHHTTCHHH-HHTEEEEEECCEEBTTB
T ss_pred EEEEeCcHhhHHHH-----------------------------------HHHHHHHcCCCCC-CCeEEEEEeeeEEcCCC
Confidence 88887644433321 2256677776420 22 4677899999999
Q ss_pred cccccCC--cccChhhhhhcC---------------------------CCchhHHHHHhhcCCCCCCccccHHHHHHHhh
Q 006368 353 KFSKSKG--IGVFGNDAKDTN---------------------------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (648)
Q Consensus 353 KMSKS~g--N~I~~~~~l~~~---------------------------~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n 403 (648)
|||||+| |+|+++|+++ . +|+|++||++++..+ .+|++|+++.+.+. +
T Consensus 424 KMSkr~G~~n~v~l~dLl~-e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~-~~~~~Fd~d~~~~~-~ 500 (629)
T 2zue_A 424 KFSGRKGTWVGFTVDEVIQ-EAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSP-DKKIIFRWEDVLNF-E 500 (629)
T ss_dssp CCCTTTTTTTTCBHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCT-TSCEECCHHHHSCC-S
T ss_pred cccCCCCCCCeeeHHHHHH-HHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCC-CCCCeecHHHHHHH-h
Confidence 9999999 9999999998 5 999999999998654 79999999999885 5
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCCCCCCCC------CCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 006368 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIV------PDA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (648)
Q Consensus 404 ~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~------p~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~ 476 (648)
++..++++|.+.|+.++++|... .+.. +.. .....++.+.+|+..+..+.+.+.+++++++++.++..++
T Consensus 501 ~~t~~ylqYa~aRi~Silrka~~---~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~ 577 (629)
T 2zue_A 501 GESAPYIQYAHARCSSILRKAEE---EGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFAN 577 (629)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHH---TTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhhhc---cccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67999999999999999987210 1110 000 0012346788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcc
Q 006368 477 SISSEGNAYLQESQFWKLYK 496 (648)
Q Consensus 477 ~l~~~~N~yi~~~~pw~l~k 496 (648)
+|++.+|+|++.+ |.+..
T Consensus 578 ~La~~fn~fy~~~--~vl~~ 595 (629)
T 2zue_A 578 ELASLFNKFYMDH--PVLKA 595 (629)
T ss_dssp HHHHHHHHHHHHC--CSTTS
T ss_pred HHHHHHHHHHHhc--cccCC
Confidence 9999999999987 45543
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.2e-32 Score=296.67 Aligned_cols=339 Identities=17% Similarity=0.156 Sum_probs=239.4
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHH-------HH--cCCC----
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA-------ME--DNCS---- 86 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A-------~~--~g~~---- 86 (648)
.++++.|....|+|+|++||||+|++ +.+|+++|++++.||+|.-...+.|.|..+-.-+ .+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~-~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p 106 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGA-VFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYP 106 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHH-HHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHH-HHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 45689999999999999999999995 6699999999999999999999999999873221 11 1211
Q ss_pred ------------H---------------------HHHHHHHHHHHHHHHhhcCcccccccCCCchHHHHHHHHHHHHHHH
Q 006368 87 ------------P---------------------KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133 (648)
Q Consensus 87 ------------~---------------------~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~ 133 (648)
. +.+++...+.+++++++|||.||.|...++ .|. .+.++++.|.+
T Consensus 107 ~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~~L~~ 184 (464)
T 3fnr_A 107 EQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLESLKE 184 (464)
T ss_dssp SSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHHHHHH
Confidence 0 112233345789999999999998855432 334 89999999999
Q ss_pred CCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeee
Q 006368 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLD 213 (648)
Q Consensus 134 ~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~ 213 (648)
+|++|++++..|...+. .|+ ..+.+++..+
T Consensus 185 ~g~~~e~dGa~~~~~~~-----------------------~g~----------------------~~~~vl~ksD----- 214 (464)
T 3fnr_A 185 HKGIYEQEGKIWLASSQ-----------------------KGD----------------------EKDRVIIRED----- 214 (464)
T ss_dssp TTCEEEETTEEEECGGG-----------------------GTC----------------------SSCEEEECTT-----
T ss_pred CCCEEEeCCeEEEEecc-----------------------cCC----------------------CCceEEEeCC-----
Confidence 99999988877753321 000 0001111100
Q ss_pred chhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeecccchHHHhccccc
Q 006368 214 LPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT 293 (648)
Q Consensus 214 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~ 293 (648)
+ ...|.|....+.
T Consensus 215 ----------------------------------------------------------G---------~~~Y~t~DiA~~ 227 (464)
T 3fnr_A 215 ----------------------------------------------------------G---------RGTYLAADIVYH 227 (464)
T ss_dssp ----------------------------------------------------------S---------CBCHHHHHHHHH
T ss_pred ----------------------------------------------------------C---------ceehhhHHHHHH
Confidence 0 011111100000
Q ss_pred -hHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCc-eEEeeceeec--CCc--cccccCCcccChhhh
Q 006368 294 -NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK-TISVTEYLNY--ESG--KFSKSKGIGVFGNDA 367 (648)
Q Consensus 294 -~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~-~~~~hg~l~~--~G~--KMSKS~gN~I~~~~~ 367 (648)
..+.. ..| ++|++.|.|+..+....+ +++.++|.+ +++ .+++||++++ +|+ |||||+||+|++.|+
T Consensus 228 ~~r~~~----~~d-~~Iyv~G~dq~~~f~~l~-~~l~~lG~~--~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dl 299 (464)
T 3fnr_A 228 KDKMSR----GYG-KCINIWGADHHGYIPRMK-AAMEFLGFD--SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDV 299 (464)
T ss_dssp HHHHTS----SCS-EEEEEEEGGGGGGHHHHH-HHHHTTTCC--GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHH
T ss_pred HHHHHc----CCC-eEEEEecCcHHHHHHHHH-HHHHHcCCC--ccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHH
Confidence 01111 112 468999999975444444 667778864 445 5677899865 775 999999999999999
Q ss_pred hhcCCCchhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhHHHHHHHHhhhCCCCCCCCCC-CCCCCCCCChHHHH
Q 006368 368 KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI-VPDANGAESHQLTK 446 (648)
Q Consensus 368 l~~~~~~d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~-~p~~~~~~~~~~d~ 446 (648)
++ .+|+|++|||+++. ...+|++|+++.+.+..|.+.+..+++.++|+.+++++... .+. .+........+.|+
T Consensus 300 l~-~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~---~~~~~~~~~~~~L~~~e~ 374 (464)
T 3fnr_A 300 VD-EIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK---KIDDVMKADLQSLNQDGV 374 (464)
T ss_dssp HH-HHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC---CTTTSTTCCCTTCCHHHH
T ss_pred Hh-hccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc---cCCCccccChhhCChHHH
Confidence 99 79999999999985 55799999999998876666666888899999999988321 111 11111112233389
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhhh
Q 006368 447 TLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (648)
Q Consensus 447 ~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~p 491 (648)
+|+..+.++++.+.+++++++++.+++.+++|++.+|+|++.++-
T Consensus 375 ~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~v 419 (464)
T 3fnr_A 375 NLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKV 419 (464)
T ss_dssp HHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999998753
No 23
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=6.3e-35 Score=324.67 Aligned_cols=273 Identities=13% Similarity=0.116 Sum_probs=186.7
Q ss_pred EEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccc--hHH---HHHHHHc--CCCH---------
Q 006368 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG--TAT---ETKAMED--NCSP--------- 87 (648)
Q Consensus 24 ~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G--~ki---~~~A~~~--g~~~--------- 87 (648)
.||+.+.|||||.+||||+|+ +|.+|+++||++++|++|.|++++||+| .+| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~-al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRE-LFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGC 99 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHH-HHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSS
T ss_pred eEEECCCCCCCCCcccCCcHH-HHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhh
Confidence 577766799999999999998 6789999999999999999999999999 888 7777777 8888
Q ss_pred -HHHHHHHHHHHHHHHhhcCcccccccCCCchHHHH-HHHHHHHHHHHCC-CEEEce--Ee-----eeeccCcCcccccc
Q 006368 88 -KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTE-ACQAIFKKLLDNN-WLIENT--MQ-----QPYCDTCKRFLADR 157 (648)
Q Consensus 88 -~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~~~-~v~~~~~~L~~~G-~iy~~~--~~-----~~y~~~~~~~l~d~ 157 (648)
+++++++.+.|++++++|||++|.| |+|+. |.. .+++++++|.++| .||.-. +. ..||. + +++.
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~- 173 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPA- 173 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSE-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceec-
Confidence 8999999999999999999999998 77743 878 8999999999999 777321 11 24443 1 3321
Q ss_pred cccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCCCcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChH
Q 006368 158 LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237 (648)
Q Consensus 158 ~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 237 (648)
...|+.||+.....+ ......+.|++
T Consensus 174 -----------------~~~~~~~~~~~~~~~--------------~~~~~~~~f~~----------------------- 199 (523)
T 1irx_A 174 -----------------MVYCPEHRREAEIIE--------------WDGGWKVKYKC----------------------- 199 (523)
T ss_dssp -----------------EEECTTTCCEECEEE--------------ECSSSCEEECC-----------------------
T ss_pred -----------------cccchhhCCcccccc--------------cCCCCceeeee-----------------------
Confidence 112455555321100 00001122322
Q ss_pred HHHHHHHHHhcccccceeeeccCC-CcccCCcCCCCceeeeeecccchHHHhccccchHHHhhcCCCCCcceEEEEeccc
Q 006368 238 AIQATHAWLKEGLKVRCITRDLKW-GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN 316 (648)
Q Consensus 238 ~~~~~~~~l~~gl~d~~IsR~~~W-Gi~vP~~~~~~~v~yVWfDa~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi 316 (648)
+.|. ++.+..| |...|.|.. .|+-.+. +|. .+ ++++|+|+
T Consensus 200 ---------~~g~----~~~~d~~~G~g~~~w~~--------------------d~~~~~~-~l~--~~---vd~~G~Dh 240 (523)
T 1irx_A 200 ---------PEGH----EGWVDIRSGNVKLRWRV--------------------DWPMRWS-HFG--VD---FEPAGKDH 240 (523)
T ss_dssp ---------SSSC----CCEECTTSSCEEECHHH--------------------HHHHHHH-HSC--CC---BCCEEHHH
T ss_pred ---------cCCC----ccccCCcCCCCCCCCCc--------------------chHhhHH-HcC--CC---CcCCCcCc
Confidence 0111 1123345 554454310 0111111 121 22 67899999
Q ss_pred cchh----HhHHHHHhhhcCCCcccCceEEeeceeecC--CccccccCCcccChhhhhhcCCCchhHHHHHhhcCCCCCC
Q 006368 317 VPFH----TVMFPSTLLGTGENWTLMKTISVTEYLNYE--SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (648)
Q Consensus 317 ~~fH----~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~--G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~~~~~~d 390 (648)
++|| ...++++ .++|.+ +| .+++|||++.+ |+|||||+||+|++.++++ .|++|++||||++ ..++++
T Consensus 241 ~~~h~s~~~~~~i~~-~alG~~--~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~-~~~pdalR~~l~~-~~~~~~ 314 (523)
T 1irx_A 241 LVAGSSYDTGKEIIK-EVYGKE--AP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRFIYAR-HRPNKE 314 (523)
T ss_dssp HSTTSHHHHHHHHHH-HHHCCC--CC-BCCEECCEEESCC---------CCCCHHHHHT-TSCHHHHHHHHHS-SCTTSC
T ss_pred cCCCcchhhHHHHHH-HHhCCC--CC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHH-HcCHHHHHHHHHh-cCCCCC
Confidence 9999 5667764 577753 55 67777999987 8999999999999999998 6999999999997 456799
Q ss_pred ccccHH-HHHHHh
Q 006368 391 TLFTWA-DLQAKS 402 (648)
Q Consensus 391 ~~fs~~-~~~~~~ 402 (648)
++||++ .+.+.+
T Consensus 315 ~~fs~~~~l~~~~ 327 (523)
T 1irx_A 315 IKIDLGLGILNLY 327 (523)
T ss_dssp EEECCSTTHHHHH
T ss_pred ceeCcchhHHHHH
Confidence 999999 777653
No 24
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.97 E-value=2.2e-30 Score=290.04 Aligned_cols=341 Identities=14% Similarity=0.157 Sum_probs=239.6
Q ss_pred CCCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchH------------------------
Q 006368 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA------------------------ 75 (648)
Q Consensus 20 ~~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~k------------------------ 75 (648)
.++++.|..+.|+|||++||||+|+ +|.+|+++|+++..||+|.++.+++|+|+.
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs-~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~ 219 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRS-TIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 219 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHH-HHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHH
Confidence 4567999999999999999999999 467999999999999999999999986554
Q ss_pred ------------------------HHHHHHH------cCCC-----HHHHHHHHHHHHHHHHhhcCcccccccCCCchHH
Q 006368 76 ------------------------TETKAME------DNCS-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQ 120 (648)
Q Consensus 76 ------------------------i~~~A~~------~g~~-----~~e~~~~~~~~~~~~~~~l~i~~D~f~rT~~~~~ 120 (648)
|+.+|++ .|.+ ++++++.+.+.|++++++|||.+|.|.++|+ .+
T Consensus 220 l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~-~~ 298 (607)
T 1f7u_A 220 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VS 298 (607)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CC
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch-hh
Confidence 3445654 4654 5789999999999999999999999987774 23
Q ss_pred HHHHHHHHHHHHHCCCEEEceEeeeeccCcCcccccccccccCCCCccccCCCCCccccccCCCCCccccCCCcCCCCCC
Q 006368 121 TEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200 (648)
Q Consensus 121 ~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c~~cg~~l~~~el~~~~~~~~g~ 200 (648)
...+.++++.|.++|++|+.++..|+..+. | |+ -+ +.
T Consensus 299 ~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~--~---------------------g~-------~~-------------d~ 335 (607)
T 1f7u_A 299 KESMLKAIDLFKEKGLTHEDKGAVLIDLTK--F---------------------NK-------KL-------------GK 335 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEGGG--T---------------------CT-------TT-------------CE
T ss_pred hhHHHHHHHHHHhCCCEEEECCcEEEEecc--c---------------------CC-------CC-------------Cc
Confidence 378899999999999999988777764331 1 00 00 00
Q ss_pred CcEEeeccceeeechhhHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcccccceeeeccCCCcccCCcCCCCceeeeeec
Q 006368 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFD 280 (648)
Q Consensus 201 ~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IsR~~~WGi~vP~~~~~~~v~yVWfD 280 (648)
.++.+....+..... |
T Consensus 336 ~v~~KsDG~~~Y~t~---D------------------------------------------------------------- 351 (607)
T 1f7u_A 336 AIVQKSDGTTLYLTR---D------------------------------------------------------------- 351 (607)
T ss_dssp EEEECTTSCCCHHHH---H-------------------------------------------------------------
T ss_pred eeEeccCCCcCCCCC---c-------------------------------------------------------------
Confidence 011111111100000 0
Q ss_pred ccchHHHhccccchHHHhhcCCCCCcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceeecCCccccccCCc
Q 006368 281 APIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGI 360 (648)
Q Consensus 281 a~~~yis~~~~~~~~~~~~w~~p~~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~~~G~KMSKS~gN 360 (648)
++|. . ..+..+ ..+ ++|++.|.|+...-...+ +++.++|.+ .+..+.+.+|..+. |||||+||
T Consensus 352 --ia~~----~--~k~~~~---~~d-~~IyV~g~~q~~~f~q~~-~~~~~lG~~--~~~~~~Hv~fg~v~--kMSkR~G~ 414 (607)
T 1f7u_A 352 --VGAA----M--DRYEKY---HFD-KMIYVIASQQDLHAAQFF-EILKQMGFE--WAKDLQHVNFGMVQ--GMSTRKGT 414 (607)
T ss_dssp --HHHH----H--HHHHHH---CCS-EEEEECCGGGHHHHHHHH-HHHHHTTCG--GGGGEEEECCCCEE--SCCGGGTC
T ss_pred --HHHH----H--HHHhhc---CCC-cEEEEEcChHhhHHHHHH-HHHHHcCCC--cCcEEEEecccccc--cccCCCCC
Confidence 0000 0 000000 011 235555555532212222 566777865 34555544775554 69999999
Q ss_pred ccChhhhhhcCCC----------c------------------hhHHHHHhhcCCCCCCccccHHHHHHHhhHHHHHHHhH
Q 006368 361 GVFGNDAKDTNIP----------V------------------EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (648)
Q Consensus 361 ~I~~~~~l~~~~~----------~------------------d~lR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N 412 (648)
+|+++|+++ .+. + .++||++++ ....++++|+++.+.+. +++...++++
T Consensus 415 ~v~L~dLld-e~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d~~~~~-~g~t~pylqY 491 (607)
T 1f7u_A 415 VVFLDNILE-ETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWERMLSF-EGDTGPYLQY 491 (607)
T ss_dssp CCBHHHHHH-HHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHHHHHCC-SSSSHHHHHH
T ss_pred cccHHHHHH-HHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHHHHHHH-hccchHHHHH
Confidence 999999998 442 2 479999998 56679999999999874 5677779999
Q ss_pred HHHHHHHhhhCCCCCCCCCC-CCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhh
Q 006368 413 FINRVLSFIAKPPGQGYGSI-VPDAN-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (648)
Q Consensus 413 ~~~R~~~~~~k~~~~~~~~~-~p~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~d~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (648)
.+.|+.++++|..+ .... +.... ....++.+..|+..+..+.+.+.+++++++++.++..+.+|+..+|+|++.++
T Consensus 492 a~aRi~SIlrka~~--~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~ 569 (607)
T 1f7u_A 492 AHSRLRSVERNASG--ITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLW 569 (607)
T ss_dssp HHHHHHHHHHHTTT--SCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC--CCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998311 1100 00001 11225678899999999999999999999999999999999999999999885
Q ss_pred h
Q 006368 491 F 491 (648)
Q Consensus 491 p 491 (648)
-
T Consensus 570 V 570 (607)
T 1f7u_A 570 V 570 (607)
T ss_dssp S
T ss_pred C
Confidence 3
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.69 E-value=3.4e-17 Score=178.27 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=77.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|+|||.+|||||+++ +..+.++| +|.+.|+..+||.+.+ + . ...+.+.|.+++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRta-l~n~l~Ar-----~~~G~~iLRieDtD~~---R---~-------~~e~~~~I~edL~w 157 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAA-ILNHEYAR-----KYDGRLILRIEDTDPR---R---V-------DPEAYDMIPADLEW 157 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCCGG---G---C-------CTTHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEEECcCCcc---c---c-------cHHHHHHHHHHHHH
Confidence 556677899999999999984 54555554 6889999999999875 1 1 33567788999999
Q ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+|..++.| +|.....++.++|+++|++|.
T Consensus 158 LGl~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 158 LGVEWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HTCCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 999999776666 788999999999999999995
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.59 E-value=1.8e-14 Score=156.96 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=74.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|+|||.+||||||++ |..+.++| +|...|+..+||.+.. .....+.+.+.+++++
T Consensus 27 v~tRFaPSPtG~LHIGhaRta-l~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSI-CLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEW 87 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHH
Confidence 455566899999999999984 55666666 5788999999999863 1244667889999999
Q ss_pred cCcccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+| ..++.| +|.....++..+|+++|++|.
T Consensus 88 LGl~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 88 LGFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TTCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 999996 445555 667777788889999999995
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.48 E-value=1.2e-13 Score=156.80 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=76.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|+|||.+||||||++ |....++| +|...|+..+||.+.+ + . ...+.+.|.+++++
T Consensus 67 v~tRFaPSPtG~LHIGhARtA-L~n~l~Ar-----~~gG~fiLRIEDTD~~---R------~----~~e~~~~IledL~w 127 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFAS-LLDFNTAR-----QYGGQFNLRMDDTNPE---L------A----RQEYVDSIADDLKW 127 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHH-HHHHHHHH-----HTTCEEEEEECCCCTT---T------C----CHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEEECcCCcc---c------c----cHHHHHHHHHHHHH
Confidence 566567899999999999984 55555555 5788999999999875 1 1 34667889999999
Q ss_pred cCcccc-cccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D-~f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||+.+| ..++.| +|....+++.++|+++|++|.
T Consensus 128 LGl~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 999996 455556 788899999999999999995
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.46 E-value=2.2e-13 Score=148.41 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|+|||.+||||+|++ |.. |+..+++...|+..+||.+.. .. ...+.+.+.+++++|||.
T Consensus 6 FAPSPtG~lHiG~arta-l~n-----~l~Ar~~~G~filRieDtD~~---------R~----~~~~~~~i~~dL~wLGl~ 66 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTA-VFN-----WLYARHRGGKFILRIEDTDRE---------RS----RPEYTENILEGLQWLGLT 66 (492)
T ss_dssp ECCCTTSCCBHHHHHHH-HHH-----HHHHHHTTCEEEEEECCCSSS---------SC----CHHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCCccHHHHHHH-HHH-----HHHHHhcCCeEEEEEeeCCcc---------cc----chHHHHHHHHHHHHcCCC
Confidence 35799999999999984 544 454556788899999998751 11 245667889999999999
Q ss_pred ccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 109 FDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 109 ~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+|. .++.| ++....+++.++|.++|++|.
T Consensus 67 wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 67 WDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 985 44555 677788899999999999995
No 29
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.37 E-value=1.3e-11 Score=134.57 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
.|+++--.|.|+|.+||||+|++ +..|.++|. ..|.-++- ++|.+. ......+...+.+.+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtA-l~n~~~Ar~--~~G~~iLR---ieDtD~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTA-LFNFLFARK--EKGKFILR---IEDTDL-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHH-HHHHHHHHH--HTCEEEEC---BCCSSC-------------CSGGGHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHH-HHHHHHHHH--cCCeEEEE---EecCCc-------------cccHHHHHHHHHHHH
Confidence 46777778899999999999995 669999998 45754444 555552 112234456678889
Q ss_pred hhcCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 103 KWFDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 103 ~~l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
++||+.+|.. ++.| ++....+++.++|.++|.+|.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS--~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQS--ERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCCCcccCCCCCceeee--ccHHHHHHHHHHHHHCCCeeE
Confidence 9999999853 2333 677888889999999999873
No 30
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.23 E-value=7.5e-11 Score=131.17 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
++.+=-| |.|+|.+||||+|++ +..+.++|. |.-.|+.-++|.+.. .-...+.+.+.+++
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artA-l~n~l~Ar~-----~~G~~ilRieDtD~~-------------r~~~~~~~~I~~dL 188 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTA-LFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESL 188 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHH-HHHHHHHHH-----HTCEEEECBCCCCSS-------------SCCHHHHHHHHHHH
T ss_pred eEEEEEC-CCCCCCccHHHHHHH-HHHHHHHHh-----cCCcEEEEecCcChh-------------hccHHHHHHHHHHH
Confidence 4445456 899999999999995 669999985 333455666665421 12345567789999
Q ss_pred hhcCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 103 KWFDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 103 ~~l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
++|||.+|.- ++.| ++....+++.++|.++|++|.
T Consensus 189 ~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 189 RWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred HHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 9999999962 3444 455788899999999999995
No 31
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.22 E-value=2.1e-11 Score=124.62 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=73.8
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
+|==.|+|||.+||||+|++ | .+|+..+++.+.|+..+||.+.+ ++ ...+.+.+.+++++|
T Consensus 7 ~~RFAPsPtG~LHiG~~rta-l-----~n~l~Ar~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~L 67 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAA-L-----GSYLQARARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHY 67 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHH-H-----HHHHHHHHTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHT
T ss_pred EEEECcCCCCCccHHHHHHH-H-----HHHHHHHhcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHc
Confidence 44445799999999999984 4 56666667889999999998865 11 145677899999999
Q ss_pred Cccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 106 DISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 106 ~i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
||.+|. .++.| ++....+++.++|.++|++|.
T Consensus 68 Gl~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 68 GLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 999995 44555 567889999999999999995
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.19 E-value=2.8e-10 Score=123.70 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=70.6
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
++|==.|.|+|.+||||+|++ |....++|- +...|+.-+||.+.+ .-...+.+.+.+++++
T Consensus 26 v~~RFAPsPtG~LHiG~~rta-l~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~w 86 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTA-LFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRW 86 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHH-HHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHH-HHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHH
Confidence 344455799999999999985 557777664 456777888887654 1133456778999999
Q ss_pred cCcccccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 105 FDISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 105 l~i~~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|||.+|.- ++.| ++....++..++|.++|.+|.
T Consensus 87 lGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 87 CGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp TTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 99999962 3444 556788999999999999995
No 33
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.18 E-value=1.3e-10 Score=125.95 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=68.2
Q ss_pred CCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 006368 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (648)
Q Consensus 29 ~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~ 108 (648)
=.|.|||.+||||+|++ +....++|- +.-.|+.-+||.+.+ .-...+.+.+.+++++||+.
T Consensus 6 FaPsPtG~LHiG~~rta-l~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dl~wlGl~ 66 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIA-LFNYAWARR-----NGGRFIVRIEDTDRA-------------RYVPGAEERILAALKWLGLS 66 (468)
T ss_dssp ECCCCSSSCBHHHHHHH-HHHHHHHHH-----TTCEEEECBCCCCTT-------------SCCTTHHHHHHHHHHHTTCC
T ss_pred eCCCCCCCccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCCc-------------ccChHHHHHHHHHHHHcCCC
Confidence 35789999999999985 557777773 445688888888654 11234456788999999999
Q ss_pred cccc---------cCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 109 FDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 109 ~D~f---------~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
+|.- ++.| ++....+++.++|.++|.+|.
T Consensus 67 wd~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 67 YDEGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp CSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCCCCCCCCeecc--CCHHHHHHHHHHHHHcCCeEE
Confidence 9863 3444 667888899999999999984
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.08 E-value=1.7e-10 Score=124.75 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=71.4
Q ss_pred EcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006368 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 27 t~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~ 106 (648)
|==.|.|+|.+||||+|+ .|..+.++|. +...|+..+||.+.+ .....+.+.+.+++++||
T Consensus 28 ~RFAPSPTG~lHiG~~rt-al~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~i~~dl~wlG 88 (490)
T 4g6z_A 28 TRFAPSPTGFIHLGNIRS-ALYPWAFARK-----MKGTFVLRIEDTDVE-------------RSSQEAVDAILEGMAWLG 88 (490)
T ss_dssp EEECCCCCSCCBHHHHHH-HHHHHHHHHH-----TTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCCccHHHHHH-HHHHHHHHHh-----cCCeEEEEeCCCCcc-------------cccHHHHHHHHHHHHHcC
Confidence 333479999999999998 4667777773 567888888887752 112466788999999999
Q ss_pred ccccc-ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 107 ISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 107 i~~D~-f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
|.+|. .++.| +|....+++.++|.++|++|.
T Consensus 89 l~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 89 LDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp CCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEe
Confidence 99985 24445 677888999999999999984
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.97 E-value=7.7e-09 Score=112.50 Aligned_cols=91 Identities=19% Similarity=0.326 Sum_probs=66.5
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
==.|.|+|.+||||+|++ |....++|- ..| .|+.=++|.+.. .....+.+.+.+++++||+
T Consensus 10 RFAPsPTG~LHiG~~rtA-L~n~l~Ar~--~gG---~fiLRieDtD~~-------------R~~~~~~~~I~~~L~wlGl 70 (498)
T 2ja2_A 10 RFCPSPTGTPHVGLVRTA-LFNWAYARH--TGG---TFVFRIEDTDAQ-------------RDSEESYLALLDALRWLGL 70 (498)
T ss_dssp EECCCSSSSCBHHHHHHH-HHHHHHHHH--HTC---EEEECBCCCCTT-------------TCCHHHHHHHHHHHHHHTC
T ss_pred EECcCCCCCccHHHHHHH-HHHHHHHHH--cCC---EEEEEECcCCCc-------------ccChHHHHHHHHHHHHcCC
Confidence 334789999999999995 668888883 234 555556665432 2223456678899999999
Q ss_pred cccc---------ccCCCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 108 SFDN---------FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 108 ~~D~---------f~rT~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
.+|. .++.| ++...-++..++|.++|.+|.
T Consensus 71 ~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 71 DWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEE
Confidence 9986 33444 567788889999999999984
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.59 E-value=4.6e-07 Score=99.63 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=64.9
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
==.|.|||.+||||||++ +....+||- . .=.|+.=+||.+.. .. ...+.+.+.+++++||+
T Consensus 28 RFAPsPtG~LHiG~artA-l~n~~~Ar~---~--~G~fiLRieDtD~~---------R~----~~~~~~~I~~~L~wlGl 88 (512)
T 4gri_A 28 RYAPSPTGLQHIGGIRTA-LFNYFFAKS---C--GGKFLLRIEDTDQS---------RY----SPEAENDLYSSLKWLGI 88 (512)
T ss_dssp EECCCSSSCCBHHHHHHH-HHHHHHHHH---T--TCEEEECBCCCCTT---------SC----CHHHHHHHHHHHHHHTC
T ss_pred EeCcCCCCcccHHHHHHH-HHHHHHHHH---c--CCEEEEEeCcCCCC---------cC----CHHHHHHHHHHHHHcCC
Confidence 335789999999999986 558888773 2 33567777777642 11 12455678899999999
Q ss_pred ccccccC-------CCchHHHHHHHHHHHHHHHCCCEEE
Q 006368 108 SFDNFGR-------TSTPQQTEACQAIFKKLLDNNWLIE 139 (648)
Q Consensus 108 ~~D~f~r-------T~~~~~~~~v~~~~~~L~~~G~iy~ 139 (648)
.+|-=.. ....++...-++..++|.++|.+|.
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 9984111 1122556777788899999999984
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.14 E-value=4.4e-05 Score=79.04 Aligned_cols=66 Identities=23% Similarity=0.171 Sum_probs=45.5
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeecee-ecCCccccccCCcccChhhhhhcCCCchhHHHHHhhc
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTN 384 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l-~~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~~ 384 (648)
+.++|.|+...+ ..=--+....|. +. ...+++.++ .++|+|||||.||.|++.| +++.+|-.+++.
T Consensus 173 ~v~~G~DQ~~~~-~l~rdla~~~~~--~~-p~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 173 LAVGGIDQRKIH-MLARENLPRLGY--SS-PVCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp EEEEEGGGHHHH-HHHHHHGGGGTC--CC-CEEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred EEEechhhHHHH-HHHHHHHHhcCC--CC-ceEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 678999997633 222222233343 22 345666777 4899999999999998875 378999999873
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.74 E-value=9e-05 Score=77.00 Aligned_cols=69 Identities=17% Similarity=-0.003 Sum_probs=44.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee-ceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT-EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h-g~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+...... +-+.+-...|.-++.|..++.| ..|. ++|.|||||.+|.|++.| +++.++=.+.+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 229 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILR 229 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHT
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHh
Confidence 78899999764422 2222222223223456666654 4553 889999999999998875 46777777765
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00025 Score=75.20 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=31.7
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cC-CccccccCCcc-cChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YE-SGKFSKSKGIG-VFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~-G~KMSKS~gN~-I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.++|.|+..... .---+....|. ..| ..+++.+|. ++ |+|||||.+|. |++.|- ++.+|=-+.+
T Consensus 185 ~v~~G~DQ~~~~~-l~rdl~~r~~~--~~p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~------p~~i~kKI~k 252 (394)
T 2dlc_X 185 CQFGGVDQRKIFV-LAEENLPSLGY--KKR-AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE------PKQVKKKINS 252 (394)
T ss_dssp EEEEEGGGHHHHH-HHHHHGGGGTC--CCC-EEEEECCCCCCC----------CCSCBTTCC------HHHHHHHHHH
T ss_pred EEecCccHHHHHH-HHHHHHHHcCC--CCC-EEEecccccCCCCCCcCCCCCCCCEEeccCC------HHHHHHHHHH
Confidence 6778999975432 22223344443 333 444456664 78 99999999996 887642 4566666654
No 40
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.46 E-value=0.0005 Score=70.66 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
++.|.+++ -|+|.+|||| ..++ -.+ ++++..|++++++.| |.|+.-. . ..++ +-+.++...+..++
T Consensus 28 ~~~vy~G~-~PTg~lHlGh-l~~l---~~~-~~lQ~~g~~~~~~i~-D~~a~~~----~--~~~~-e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 28 EKSAYIGF-EPSGKIHLGH-YLQI---KKM-IDLQNAGFDIIILLA-DLAAYLN----Q--KGEL-DEIRKIGDYNKKVF 93 (314)
T ss_dssp SEEEEEEE-CCCSSCBHHH-HHHH---HHH-HHHHHTTEEEEEEEC-HHHHHHT----T--CCCH-HHHHHHHHHHHHHH
T ss_pred CCEEEEcc-CCCCCcchhh-HHHH---HHH-HHHHHCCCCEEEEEe-cceEecC----C--CCCH-HHHHHHHHHHHHHH
Confidence 44554544 4568999999 6543 334 444456999888776 2222110 0 1133 34455557778888
Q ss_pred hhcCccccccc
Q 006368 103 KWFDISFDNFG 113 (648)
Q Consensus 103 ~~l~i~~D~f~ 113 (648)
.++|+. ..|+
T Consensus 94 ~a~G~d-~~~~ 103 (314)
T 2zp1_A 94 EAMGLK-AKYV 103 (314)
T ss_dssp HHTTCC-CEEE
T ss_pred HhcCCC-eEEE
Confidence 888876 4443
No 41
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.25 E-value=0.00066 Score=71.20 Aligned_cols=74 Identities=8% Similarity=-0.115 Sum_probs=43.8
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.|.+++ -|+|.+|||| ..++ -.+++ ++..|++++++.| |.|+.-. ...|.++.+ +.++...+..++.+
T Consensus 37 ~iy~G~-~PTg~lHlG~-l~~l---~~~~~-lQ~~G~~~~~~ia-D~~a~~~----~ps~~~~e~-i~~~~~~~~~~~la 104 (364)
T 2cya_A 37 KGYIGY-EPSGVAHIGW-LVWM---YKVKD-LVEAGVDFSVLEA-TWHAYIN----DKLGGDMDL-IRAAARIVRRVMEA 104 (364)
T ss_dssp EEEEEE-CCCSSCBTHH-HHHH---HHHHH-HHHTTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred EEEecc-CCCCCccHhH-HHHH---HHHHH-HHHCCCCEEEEEe-CcchhhC----CCCCCCHHH-HHHHHHHHHHHHHH
Confidence 444443 4569999999 5532 33444 4456999988777 3333211 111234433 34445667778889
Q ss_pred cCcccc
Q 006368 105 FDISFD 110 (648)
Q Consensus 105 l~i~~D 110 (648)
+|+.++
T Consensus 105 ~G~dp~ 110 (364)
T 2cya_A 105 AGVPVE 110 (364)
T ss_dssp TTCCGG
T ss_pred hCCCcc
Confidence 998876
No 42
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=96.85 E-value=0.00059 Score=70.66 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=47.7
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i 107 (648)
+++ -|+|.+||||..+ .+. -+.+++. |++++|..+ |.|..-. ..+|. -+.++......+|.++|+
T Consensus 11 sG~-~PTG~lHLGhy~g-~l~--~~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 11 SGV-QPSGELSIGNYLG-ALR--QWQQMQD--DYDCQYCVV-DLHAITV-------RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp EEE-CSSSCCBHHHHHH-TGG--GHHHHHH--HSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred eCc-CCCCcccHHHHHH-HHH--HHHHHHh--cCeEEEEEe-cceeEcC-------CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 443 5669999999887 342 2334443 688877655 5554321 23553 445555667778888999
Q ss_pred ccc---cccCCCchHHHH
Q 006368 108 SFD---NFGRTSTPQQTE 122 (648)
Q Consensus 108 ~~D---~f~rT~~~~~~~ 122 (648)
+++ .|..+.-++|.+
T Consensus 76 Dp~k~~i~~qS~v~~~~e 93 (341)
T 3sz3_A 76 DPKKSTLFVQSHVPEHAQ 93 (341)
T ss_dssp CTTTSEEEEGGGCTHHHH
T ss_pred ChhhcEEEeccchhhhHH
Confidence 886 244444455543
No 43
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=94.86 E-value=0.016 Score=59.57 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=43.0
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe--eceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV--TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLL 382 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~--hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll 382 (648)
+..+|.|+...+.. +-+-+-...|..++.|..++. +..|. ++|+|||||.+|.|++.| +++.++=.+.
T Consensus 142 ~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~ 215 (322)
T 3tzl_A 142 IVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQIS 215 (322)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHH
T ss_pred EEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHH
Confidence 78899999765422 112111111323346666653 45554 899999999999998764 3566776666
Q ss_pred h
Q 006368 383 T 383 (648)
Q Consensus 383 ~ 383 (648)
+
T Consensus 216 ~ 216 (322)
T 3tzl_A 216 S 216 (322)
T ss_dssp T
T ss_pred h
Confidence 4
No 44
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.81 E-value=0.034 Score=59.03 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=43.7
Q ss_pred EEEEeccccchhHhHHHHHhhhc-CCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGT-GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~-g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.... =--+.... +. .+...+.+..|. .+|+|||||.||.|++.+- ..+++.++=++++
T Consensus 188 i~~gG~DQ~~ni~l-grdlarr~~~~---~~~~~lt~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~qki~~ 257 (419)
T 2ts1_A 188 LQIGGSDQWGNITA-GLELIRKTKGE---ARAFGLTIPLVTKADGTKFGKTESGTIWLDKE---KTSPYEFYQFWIN 257 (419)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHHC-----CCEEEEECCCCCTTSCCTTCCSSCCCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhcCC---CCeeecccccccCCCcccccCCCCCeEecCCC---CCCHHHHHHHHhc
Confidence 78899999654322 11111222 22 123444556664 8999999999999999873 4677888877775
No 45
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.75 E-value=0.041 Score=58.56 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=44.2
Q ss_pred EEEEeccccchhHhHHHHHhhhc-CCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGT-GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~-g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.... =--+.... +. .+...+.+..|. .+|+|||||.||.|++.+- ..+++.++=++++
T Consensus 189 i~~gG~DQ~~ni~~-grdla~r~~~~---~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~~ki~~ 258 (420)
T 1jil_A 189 IQVGGSDQWGNITS-GIELMRRMYGQ---TDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE---KTSPYEFYQFWIN 258 (420)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHHCC---CCCEEEEECCCBCTTSCBTTBCSSSBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhcCC---CCeeEeecccccCCccccccCCCCCeEecCCC---CCCHHHHHHHHhc
Confidence 78899999654321 11112222 22 123444556664 8999999999999999873 4677888877775
No 46
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.74 E-value=0.025 Score=58.18 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=43.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.++|.|+...... =--+....+. . +...+.+..|. .+|+|||||.+|.|++.| + +.+++.++=++.+
T Consensus 194 v~~gG~DQ~~~i~l-~rdla~r~n~--~-~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~-~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 194 LCIGGSDQWGNITS-GIDLTRRLHQ--N-QVFGLTVPLITKADGTKFGKTEGGAVWLDP--K-KTSPYKFYQFWIN 262 (322)
T ss_dssp EEEECTTCHHHHHH-HHHHHHHHHC--C-CCEEEECCCCBCTTSCBTTEETTEECBSST--T-TSCHHHHHHHHHT
T ss_pred EEecCchhHHHHHH-HHHHHHHhCC--C-CceeeccCccCCCCcccccCCCCCeeeccC--C-CCCHHHHHHHHhC
Confidence 78899999654322 1111111221 1 22333445554 799999999999999987 3 5778888877775
No 47
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.64 E-value=0.045 Score=58.43 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=43.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc-cccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+ |...=--+....|. .|...+.+..|. .+|. |||||.||.|++.| +++.++=++++
T Consensus 190 l~~gG~DQ~~-ni~l~rdlarr~~~---~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 256 (432)
T 1h3f_A 190 VEMGGTDQRF-NLLVGREVQRAYGQ---SPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 256 (432)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTTC---CCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred EEEechHHHH-HHHHHHHHHHHhCC---CCceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhC
Confidence 7899999964 43222222233342 234555666664 8996 99999999999876 56778877775
No 48
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=94.56 E-value=0.034 Score=57.92 Aligned_cols=68 Identities=13% Similarity=-0.024 Sum_probs=33.2
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+...... =--+....+. .+...+.+..|. ++|+|||||.||.|++.|- .-+++.++=++++
T Consensus 213 i~p~G~DQ~~~i~l-~rdla~r~n~---~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~~ki~~ 281 (356)
T 2pid_A 213 VQLGGSDQLGNIMS-GYEFINKLTG---EDVFGITVPLITSTTGAKLGKSAGNAVWLNRD---KTSPFELYQFFVR 281 (356)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHSS---CCCEEEEECCCC-------------CCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCC---CCccccccccccCCCcccccCCCCCeeeccCC---CCCHHHHHHHHHc
Confidence 78899999654321 1111222232 123344456664 8999999999999999873 4678888888886
No 49
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=94.39 E-value=0.013 Score=49.91 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=29.3
Q ss_pred HHHHHhhhcccCCCCc-eeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENGL-CSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l-~~~~~~~~~~~~~q~~~~ 641 (648)
.++.++++++++|+|| +.+|+|+|+++.|||+|.
T Consensus 14 VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G 48 (109)
T 1gd7_A 14 VGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQ 48 (109)
T ss_dssp EEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEEC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCCCcEEEEEEC
Confidence 3456788999999999 999999987778999984
No 50
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=94.29 E-value=0.0058 Score=52.87 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEeccccccC
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCFN 647 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~ 647 (648)
++++.++.+++++|+||+.+++|+|+ +.||+.|.+..++.
T Consensus 15 rVG~I~~~e~hp~AdKL~~~~VD~G~-~~~~iv~g~~~~y~ 54 (118)
T 3ers_X 15 RVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYS 54 (118)
T ss_dssp EEEEEEEEECCTTCSSCEEEEEECSS-SEEEEEECCTTTSC
T ss_pred EEEEEEEEEEcCCCCCcEEEEEEcCC-cEeeEEEEeehhcC
Confidence 34567788999999999999999976 67888888776653
No 51
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.13 E-value=0.049 Score=58.02 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=43.4
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+.... =--+....+. .+...+.+-.|. .+|+|||||.|| .|++.+- ..+++.++=++++
T Consensus 190 i~~gG~DQ~~ni~l-grdlarr~~~---~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d~---~tsp~~i~qki~~ 259 (432)
T 2jan_A 190 LQIGGADQWGNIIA-GVRLVRQKLG---ATVHALTVPLVTAADGTKFGKSTGGGSLWLDPQ---MTSPYAWYQYFVN 259 (432)
T ss_dssp EEEECSTTHHHHHH-HHHHHHHHHC---CCCEEEECCCCBCTTSCBTTBCSSSCBCBSSTT---TSCHHHHHHHHHT
T ss_pred EEeccHHHHHHHHH-HHHHHHHhCC---CCccccccccccCCCcCcCCCCCCCCeEEccCC---CCCHHHHHHHHhc
Confidence 78899999644321 1111111221 123444455664 899999999999 9999873 4678888877775
No 52
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=94.00 E-value=0.023 Score=48.28 Aligned_cols=33 Identities=6% Similarity=0.097 Sum_probs=28.4
Q ss_pred HHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 609 AEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 609 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
++.++++++++|+||+.+|+|+|+ +.|||+|+=
T Consensus 16 G~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~ 48 (107)
T 1mkh_A 16 GKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGL 48 (107)
T ss_dssp EEEEEEEECTTCSSCEEEEEECSS-CEEEEEECC
T ss_pred EEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCC
Confidence 456778999999999999999987 689999853
No 53
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=93.98 E-value=0.023 Score=48.67 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
.++.++.+++++|+||+.+|+|+|+ +.|||+|.=
T Consensus 19 VG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~ 52 (112)
T 2cwp_A 19 VGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGI 52 (112)
T ss_dssp EEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECC
T ss_pred EEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECC
Confidence 3456788999999999999999987 789999853
No 54
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.91 E-value=0.05 Score=56.56 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=42.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee-ceee-cCCc-cccccCCcccChhhhhhcCCCchhHHHHHh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT-EYLN-YESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLL 382 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h-g~l~-~~G~-KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll 382 (648)
+..+|.|+...... +-..+-...|.-++.|..++.| ..|. ++|. |||||.+|.|++.|- ++.++=.+.
T Consensus 165 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~------p~~i~~Ki~ 238 (351)
T 1yi8_B 165 LVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS------ADEVARKVM 238 (351)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC------HHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC------HHHHHHHHH
Confidence 78899999764422 1122212234223456666653 4553 7997 999999998887642 566666666
Q ss_pred h
Q 006368 383 T 383 (648)
Q Consensus 383 ~ 383 (648)
+
T Consensus 239 ~ 239 (351)
T 1yi8_B 239 G 239 (351)
T ss_dssp T
T ss_pred h
Confidence 4
No 55
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.89 E-value=0.051 Score=57.01 Aligned_cols=65 Identities=20% Similarity=0.057 Sum_probs=34.4
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCccccccCCc-ccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~KMSKS~gN-~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+.++|.|+..... .---+....|. ..| ..+++.+|. ++|+|||||.+| .|++.| +++.++=.+.+
T Consensus 181 ~v~~G~DQ~~~~~-l~rdl~~r~~~--~~p-~~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~ 247 (372)
T 1n3l_A 181 AQFGGIDQRKIFT-FAEKYLPALGY--SKR-VHLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK 247 (372)
T ss_dssp EEEEEGGGHHHHH-HHHHHGGGGTC--CCC-EEEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT
T ss_pred EEEcChhHHHHHH-HHHHHHHHcCC--CCC-EEEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH
Confidence 6789999975432 22222333443 333 344456664 899999999999 687764 25667776665
No 56
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.86 E-value=0.039 Score=57.07 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.5
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee--ceee-cCC-ccccccCCcccChhhhhhcCCCchhHHHHH
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT--EYLN-YES-GKFSKSKGIGVFGNDAKDTNIPVEVWRYYL 381 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h--g~l~-~~G-~KMSKS~gN~I~~~~~l~~~~~~d~lR~~l 381 (648)
+..+|.|+...... +-+.+-...|.-++.|..++.. ..|. ++| +|||||.+|.|++.| +++.++=.+
T Consensus 144 lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki 217 (337)
T 2el7_A 144 TVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKI 217 (337)
T ss_dssp EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHH
T ss_pred EEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHH
Confidence 78899999765432 1222211124223355554442 3554 899 999999999988865 256777777
Q ss_pred hh
Q 006368 382 LT 383 (648)
Q Consensus 382 l~ 383 (648)
.+
T Consensus 218 ~~ 219 (337)
T 2el7_A 218 QH 219 (337)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 57
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=93.32 E-value=0.13 Score=54.16 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=56.4
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHh-CCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRL-RGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~-~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|.+++ -|+|.+||||..+ +- +.|++.. .|++++++.+ |.|..-. ..+.++.+ +.++......
T Consensus 72 ~p~~i~sG~-~PTG~lHLGh~v~----~~-~~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e~-i~~~~~~~~~ 138 (392)
T 3jxe_A 72 RGFFLYTGR-GPSGPMHIGHIIP----FF-ATKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFDD-TKRWAYDNIL 138 (392)
T ss_dssp CCCEEEEEE-CCSSCCBHHHHHH----HH-HHHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHHH-HHHHHHHHHH
T ss_pred CCeEEEecc-CCCCchhHHHHHH----HH-HHHHHHHhcCCceEEEec-chHHhhc-----CCCCCHHH-HHHHHHHHHH
Confidence 455666665 4559999999765 22 3444555 7999988887 5553211 11345544 4455556677
Q ss_pred HHhhcCcccc---cccCCCchHHHHHHHHH
Q 006368 101 VYKWFDISFD---NFGRTSTPQQTEACQAI 127 (648)
Q Consensus 101 ~~~~l~i~~D---~f~rT~~~~~~~~v~~~ 127 (648)
++.++|+.++ .|..+.-+.|...+..+
T Consensus 139 ~~lA~GlDp~kt~i~~qS~~~~~~~~~~~l 168 (392)
T 3jxe_A 139 DIIAVGFDPDKTFIFQNSEFTKIYEMAIPI 168 (392)
T ss_dssp HHHTTCCCTTSEEEEETTTSTHHHHHHHHH
T ss_pred HHHHhCcCccceEEEECchhHHHHHHHHHH
Confidence 7888899886 34445545555554443
No 58
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=93.25 E-value=0.032 Score=47.72 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 607 KTAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
+.++.++++++++|+||+.+|+|+|+ +.|||+|.=
T Consensus 18 rVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~ 52 (111)
T 1pyb_A 18 RVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGI 52 (111)
T ss_dssp EEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECC
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECC
Confidence 34566788999999999999999987 789998853
No 59
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=93.23 E-value=0.029 Score=59.16 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=31.3
Q ss_pred eEEeeceee-cCCccccccCCcccChhhhhhcCCCchhHHHHHhh
Q 006368 340 TISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 340 ~~~~hg~l~-~~G~KMSKS~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
..+.+..|. ++|+|||||.||.|++.+- .-+++.++=++++
T Consensus 279 ~~l~~pll~~ldG~KMSKS~~naI~L~d~---~tsp~~i~qki~~ 320 (392)
T 1y42_X 279 VGFTVPLLTDSSGAKFGKSAGNAIWLDPY---QTSVFDFYGYFVR 320 (392)
T ss_dssp EEEECCCCBCTTCCBTTBCSSSBCBSSTT---TSCHHHHHHHHHT
T ss_pred cccccccCcCCchhhccCCCCCeeeccCC---CCCHHHHHHHHHc
Confidence 444556664 8999999999999999873 3567777777775
No 60
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=92.26 E-value=0.027 Score=48.30 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEec
Q 006368 608 TAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~ 641 (648)
.++.++++++++|+|| +.+|+|+|++ +.|||+|.
T Consensus 17 VG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G 52 (113)
T 2nzh_A 17 TGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQ 52 (113)
T ss_dssp EEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEEC
T ss_pred EEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEEC
Confidence 4567788999999999 9999999875 68999984
No 61
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=92.09 E-value=0.031 Score=48.17 Aligned_cols=34 Identities=0% Similarity=-0.011 Sum_probs=29.1
Q ss_pred HHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEec
Q 006368 608 TAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~ 641 (648)
.++.++++++++|+|| +.+|+|+|++ +.|||+|.
T Consensus 20 VG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G 55 (116)
T 2q2i_A 20 VGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQ 55 (116)
T ss_dssp EEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEES
T ss_pred EEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEEC
Confidence 4567788999999999 9999999865 68999884
No 62
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=91.76 E-value=0.035 Score=47.51 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=29.4
Q ss_pred HHHHHhhhcccCCCC-ceeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENG-LCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~-l~~~~~~~~~~~~~q~~~~ 641 (648)
.++.++.+++++|+| |+..++|+|+++.|||+|.
T Consensus 17 VG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G 51 (112)
T 3g48_A 17 IGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQ 51 (112)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEEC
T ss_pred EEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeC
Confidence 345678889999999 9999999987788999985
No 63
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=91.64 E-value=0.16 Score=53.51 Aligned_cols=77 Identities=5% Similarity=-0.071 Sum_probs=44.4
Q ss_pred CcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 22 ~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|.++. -|+ |.+||||... +..++++++..|..|.+..| ++- ....+...++. -+.++......
T Consensus 73 ~~~~vy~G~-~PTa~~lHlGh~v~----~~~~~~lQ~~~~~~v~i~I~-----D~~-~~~~r~~~~~e-~i~~~~~~~~~ 140 (393)
T 3hv0_A 73 ELFYLYTGR-GPSSESLHVGHLVP----FLFTKYLQDTFKVPLVIQLT-----DDE-KFIFKSNLTLE-ETHNYAYENMK 140 (393)
T ss_dssp CCCEEEEEE-CCSSSSCBSTTHHH----HHHHHHHHHHHCCCEEEEEC-----HHH-HHHHCTTCCHH-HHHHHHHHHHH
T ss_pred CCeEEEeCC-CCCCCCccHHHHHH----HHHHHHHHHhcCCCeEeecc-----ChH-HHhhccCCCHH-HHHHHHHHHHH
Confidence 356666766 566 7899999553 44556655555878777443 221 11122245644 44445555666
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
++.++|++.+
T Consensus 141 ~~lA~GlDp~ 150 (393)
T 3hv0_A 141 DIIACGFDPE 150 (393)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHcCCCCc
Confidence 6667777654
No 64
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=91.44 E-value=0.23 Score=51.97 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=51.5
Q ss_pred CcEE----EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHH
Q 006368 22 RNIL----ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHV 96 (648)
Q Consensus 22 ~~~~----it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~ 96 (648)
+++| |.+++ -|+|.+||||..+ .+ . .+.+++ |++|+|+.+ |.|..-. ..+|.++ .++..
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvG-al-~----~~~~LQ~~~~~~~~Ia-D~hAlt~-------~~~~~~l-r~~~~ 93 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIG-AM-K----QFVELQHDYNSYFCIV-DQHAITV-------PQDRLEL-RKNIR 93 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHH-TH-H----HHHHTTTTSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHH
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHH-HH-H----HHHHHHccCcEEEEEe-cceeeec-------CCCHHHH-HHHHH
Confidence 4566 66666 6779999999887 34 1 222333 999977664 5554321 2355444 44455
Q ss_pred HHHHHHhhcCcccc---cccCCCchHHHHH
Q 006368 97 IHKDVYKWFDISFD---NFGRTSTPQQTEA 123 (648)
Q Consensus 97 ~~~~~~~~l~i~~D---~f~rT~~~~~~~~ 123 (648)
....+|.++|++++ .|..+.-++|.+.
T Consensus 94 ~~aa~~lA~GlDp~kt~if~qS~v~~~~el 123 (388)
T 3prh_A 94 NLAALYLAVGLDPEKATLFIQSEVPAHAQA 123 (388)
T ss_dssp HHHHHHHHTTCCTTTEEEEEGGGSTHHHHH
T ss_pred HHHHHHHHhCCChhHeEEEecccccchHHH
Confidence 67778888999986 3555555666543
No 65
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=91.43 E-value=0.08 Score=45.19 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecccccc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNGSLCF 646 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~ 646 (648)
.++.++.+++++|+||+..++|+|+ +.|||.|....++
T Consensus 16 VG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~ 53 (111)
T 1pxf_A 16 VGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYY 53 (111)
T ss_dssp EEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTS
T ss_pred EEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcc
Confidence 3456778999999999999999975 7899998645554
No 66
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=91.32 E-value=0.043 Score=48.26 Aligned_cols=35 Identities=0% Similarity=0.015 Sum_probs=30.2
Q ss_pred HHHHHHhhhcccCCCCc-eeEEEecCCC-ccceEEec
Q 006368 607 KTAEQLKKTKISGENGL-CSLQSETSSN-EGNQITCN 641 (648)
Q Consensus 607 ~~~~~~~~~k~~~~~~l-~~~~~~~~~~-~~~q~~~~ 641 (648)
+.++.++++++++|+|| +.+|+|+|++ +.|||+|.
T Consensus 34 rVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G 70 (131)
T 2q2h_A 34 RVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQ 70 (131)
T ss_dssp EEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEES
T ss_pred EEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEEC
Confidence 45678888999999999 9999999875 68999884
No 67
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=91.21 E-value=0.27 Score=51.42 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+++++|.|++ -|+|.+||||..+ .+ ..+++...|++|+|..+ |.|-.-. ......+....+......
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~-~~----~~~~lq~~~~~~~~~Ia-D~ha~t~------~~~~~~e~~r~~~~~~~~ 134 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLT-VD----QLIYLQKNGFKVFVAIA-DAEAFAV------RRIGREEAVRIAVEEYIA 134 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHH-HH----HHHHHHHTTCEEEEEEC-HHHHHHT------TCCCHHHHHHHHHHTTHH
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHH-HH----HHHHHHhCCCeEEEEEe-cchhhcc------CCCCCHHHHHHHHHHHHH
Confidence 4577888887 7789999999663 22 35556667999976654 5553211 122233444555556667
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
++-++|+.++
T Consensus 135 ~~lA~GlDP~ 144 (372)
T 3a04_A 135 NMIALGLDPK 144 (372)
T ss_dssp HHHHHTCCTT
T ss_pred HHHHcCCChH
Confidence 7788899886
No 68
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=91.04 E-value=0.13 Score=54.07 Aligned_cols=77 Identities=8% Similarity=-0.036 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++++|.+++ -|+| .+||||.. .+..++++++..|..+.++.|-+++ +.....++.+ +.++.....
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v----~~~~~~~lQ~~~~~~v~i~I~D~~~-------~l~~~~~~e~-i~~~~~~~~ 142 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLI----PFMFTKWLQDSFRVPLVIQMTDDEK-------FYFRNIPMEQ-VEAMTTENI 142 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSH----HHHHHHHHHHHHTCCEEEEECHHHH-------HHHSCCCHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHH----HHHHHHHHHHhcCCcEEEEEcchHH-------HhcCCCCHHH-HHHHHHHHH
Confidence 3466777776 6778 79999964 3555666555558888777443331 1122255444 444555566
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
.++.++|+..+
T Consensus 143 ~~~lA~GlDp~ 153 (395)
T 3i05_A 143 KDIIAMGFDPE 153 (395)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHcCCCCC
Confidence 66666776554
No 69
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=90.92 E-value=0.39 Score=50.31 Aligned_cols=77 Identities=14% Similarity=0.018 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 21 ~~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++.|.+++ -|+|.+||||..+ +.+.+++++..|..+.++.+.+ + +.. ....++.++ .++......
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~----~~~~~~lQ~~~g~~v~i~I~D~-~--a~~----~r~~~~e~i-~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYIT----LEFARYLQDAFNIQVIIQILDD-I--KVL----NREATINEA-SKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHH----HHHHHHHHHHHCCEEEEEECHH-H--HHH----TTSCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHH----HHHHHHHHHhcCCeEEEEeCch-H--Hhh----cCCCCHHHH-HHHHHHHHH
Confidence 3466777776 6779999999554 5555555555688888773322 1 111 112565544 444456667
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
.+-++|+..+
T Consensus 147 ~~lA~GlDp~ 156 (386)
T 3hzr_A 147 YILAFGFNED 156 (386)
T ss_dssp HHHHTCCCGG
T ss_pred HHHHcCCCCc
Confidence 7788888775
No 70
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=90.78 E-value=0.099 Score=49.26 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 605 AAKTAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 605 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
..+.++.++++++++|+||+..|+|+| ++.|||+|.
T Consensus 92 ~vvVG~V~~~e~hP~ADkL~v~~VdvG-~~~~qIV~G 127 (199)
T 3bu2_A 92 KFVVGYVETKDKHPDADKLSVLSVDVA-TEKLQIVCG 127 (199)
T ss_dssp SEEEEEEEEEEECTTTSSCEEEEEECS-SCEEEEEEC
T ss_pred CeEEEEEEEEEECCCCCEEEEEEEEeC-CEEEEEEeC
Confidence 345678899999999999999999998 578999985
No 71
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.73 E-value=0.16 Score=52.60 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=45.3
Q ss_pred EEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 006368 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (648)
Q Consensus 26 it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l 105 (648)
|.+++ -|+|.+||||..+. + --+.++ +. |+++++..+ |.|+.-. ..+|.++ ..+...+..++.++
T Consensus 7 i~sG~-~PTG~lHLGn~vg~-l--~~~~~l-Q~-~~~~~~~Ia-D~ha~~~-------~~d~~~i-~~~~~~~~~~~lA~ 71 (348)
T 2yy5_A 7 ALTGI-QASGKQHLGNYLGV-M--QSLIEL-QE-QCQLFVFVA-DLHSITV-------DFQPQAL-KQNNFDLVRTLLAV 71 (348)
T ss_dssp EEEEE-CCCTTCBHHHHHHT-G--GGHHHH-HH-HSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHHT
T ss_pred EEEee-CCCCcccHHHHHHH-H--HHHHHH-Hh-CCcEEEEEc-ChhhccC-------CCCHHHH-HHHHHHHHHHHHHh
Confidence 33444 45599999998874 3 112233 33 899877665 3232211 0344433 33445666778888
Q ss_pred Ccccc---cccCCCchHHHH
Q 006368 106 DISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 106 ~i~~D---~f~rT~~~~~~~ 122 (648)
|+.++ .|..+.-+.|.+
T Consensus 72 Gldp~k~~if~qS~~~~~~e 91 (348)
T 2yy5_A 72 GLDPQKACLFLQSDLLEHSM 91 (348)
T ss_dssp TCCTTTEEEEEGGGCHHHHH
T ss_pred CCChhHeEEEECCcccchhH
Confidence 99886 344444455433
No 72
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.51 E-value=0.18 Score=51.81 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc-
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD- 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D- 110 (648)
-|+|.+||||..+. + --+.+. .. |++++++.| |.|+.-. . .++. -+.++...+..+|.++|+.++
T Consensus 9 ~PTG~lHlGn~vg~-l--~~~~~l-Q~-g~~~~~~Ia-D~ha~~~-~------~~~e-~i~~~~~~~~~~~la~Gldp~k 74 (328)
T 1i6k_A 9 QPSGVITIGNYIGA-L--RQFVEL-QH-EYNCYFCIV-DQHAITV-W------QDPH-ELRQNIRRLAALYLAVGIDPTQ 74 (328)
T ss_dssp CCCSCCBHHHHHHT-H--HHHHHH-TT-TSEEEEEEC-HHHHTTS-C------CCHH-HHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCCcccHHHHHHH-H--HHHHHH-Hc-CCcEEEEEe-CceeecC-C------CCHH-HHHHHHHHHHHHHHHhCCChhh
Confidence 34589999998873 3 122222 22 999877665 3333211 0 3444 344455577788889999886
Q ss_pred --cccCCCchHHHH
Q 006368 111 --NFGRTSTPQQTE 122 (648)
Q Consensus 111 --~f~rT~~~~~~~ 122 (648)
.|..+.-++|.+
T Consensus 75 ~~if~qS~~~~~~~ 88 (328)
T 1i6k_A 75 ATLFIQSEVPAHAQ 88 (328)
T ss_dssp EEEEEGGGCTHHHH
T ss_pred cEEEecCchhhhhH
Confidence 344444444443
No 73
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=90.44 E-value=0.23 Score=52.84 Aligned_cols=77 Identities=10% Similarity=0.007 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
++++.|.+++ -|+ |.+||||... . -..+++++..|+.++++.|-.+ +. +-. ..++.+ +.++...+.
T Consensus 106 ~~~~~vy~G~-dPTag~LHLGh~v~-~---~~~~~lQ~~~G~~~iilIgD~t-a~--igd----~lt~e~-i~~n~~~~~ 172 (437)
T 1r6u_A 106 KKPFYLYTGR-GPSSEAMHVGHLIP-F---IFTKWLQDVFNVPLVIQMTDDE-KY--LWK----DLTLDQ-AYGDAVENA 172 (437)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHH-H---HHHHHHHHHHTCCEEEEECHHH-HH--HHS----SCCHHH-HHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHH-H---HHHHHHHHHhCCcEEEEEecce-ee--ecC----CCCHHH-HHHHHHHHH
Confidence 3467777777 556 8999999764 2 2344444437999887776322 11 110 345443 334433444
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
..+..+|+..+
T Consensus 173 ~~~lA~GlDp~ 183 (437)
T 1r6u_A 173 KDIIACGFDIN 183 (437)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHhCCCcc
Confidence 55555666543
No 74
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=90.12 E-value=0.2 Score=53.31 Aligned_cols=77 Identities=6% Similarity=-0.034 Sum_probs=44.2
Q ss_pred CcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 22 ~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
++++|.+++ -|+ |.+||||... .-.++++++..|+.++++.| |.|+.- . ....++. .+.++......
T Consensus 101 ~~~~vy~G~-dPTag~LHLGh~v~----~~~l~~lQ~~~g~~~i~lI~-D~ta~l--~---~~~~t~e-~i~~~~~~~~~ 168 (432)
T 2ip1_A 101 KPFFLYTGR-GPSSDSMHLGHMIP----FVFTKWLQEVFDVPLVIELT-DDEKFL--F---KHKLTIN-DVKNFARENAK 168 (432)
T ss_dssp CCCEEEEEE-CCCSSCCBGGGHHH----HHHHHHHHHHHTCCEEEEEC-HHHHHH--H---CTTCCHH-HHHHHHHHHHH
T ss_pred CCeEEEEee-cCCCCCccHHHHHH----HHHHHHHHHHcCCeEEEEEe-ccccee--C---CCCCCHH-HHHHHHHHHHH
Confidence 356666776 556 8999999764 22344544447999888887 333211 0 0124543 34444444555
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
.+.++|+..+
T Consensus 169 ~~lA~GlDp~ 178 (432)
T 2ip1_A 169 DIIAVGFDPK 178 (432)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCCC
Confidence 5666676654
No 75
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=89.46 E-value=0.31 Score=51.44 Aligned_cols=77 Identities=8% Similarity=-0.050 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
++++.|.+++ -|+| .+||||..+ +...+++++..|..+.+..| |.|. +.. ...++.+ +.++.....
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~----~~~~~~lQ~~~g~~~~i~Ia-D~~a--~l~----~~~~~e~-i~~~~~~~~ 165 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIP----FLLCKYMQDAFKIRLVIQIT-DDEK--FLW----KSMRLED-AMAYGRENI 165 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHH----HHHHHHHHHHHTCCEEEEEC-HHHH--HHH----SSCCHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHH----HHHHHHHHHhcCCcEEEEee-ChHH--HcC----CCCCHHH-HHHHHHHHH
Confidence 4567777777 6777 899999553 44555555555888777544 4432 111 1245444 444455566
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
.++-++|+..+
T Consensus 166 ~~~lA~GlDp~ 176 (406)
T 3tze_A 166 KDIVTLGFDPK 176 (406)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCcc
Confidence 66667777664
No 76
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=89.43 E-value=0.28 Score=51.36 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=37.3
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc-ccccc-CCcccChhhhhhcCCCchhHHHHHhh
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG-KFSKS-KGIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~-KMSKS-~gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+|.|+.++... =--+....|. +.| .++.+.+|. ++|. ||||| .+|.|++.| +++.++=-+.+
T Consensus 230 vG~DQ~~hl~l-~Rdla~r~n~--~~p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k 294 (386)
T 3hzr_A 230 DSIKNVQFHSI-IDQIATTLNF--IQP-TVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINK 294 (386)
T ss_dssp EEGGGHHHHHH-HHHHHHHHTC--CCC-EEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHcCC--CCc-eEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHH
Confidence 59999654422 1122223343 345 455556664 7885 99999 899998764 24556655554
No 77
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=89.35 E-value=0.36 Score=49.36 Aligned_cols=78 Identities=8% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc-
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD- 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D- 110 (648)
-|+|.+||||..++ +. .++++++ |++++++.| |.|+.-. ..++.+ ..++......+|.++|++++
T Consensus 11 ~PTg~lHlG~~lg~-l~--~~~~lQ~--g~~~~~~ia-D~ha~~~-------~~~~~~-l~~~~~~~~~~~lA~Gldp~k 76 (322)
T 3tzl_A 11 QPSGDLHIGNYFGA-IK--QMVDAQE--KSQMFMFIA-NYHAMTS-------SQDGEK-LKQNSLKAAAAFLSLGIDPQK 76 (322)
T ss_dssp CCSSCCBHHHHHHT-HH--HHHHTTT--TSCCEEEEC-HHHHTTT-------CCCHHH-HHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCccccHHHHHHH-HH--HHHHHhc--CCCEEEEEe-cCeeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCccc
Confidence 46689999998874 32 2445444 999988776 5554221 114443 34445566677778899886
Q ss_pred --cccCCCchHHHHH
Q 006368 111 --NFGRTSTPQQTEA 123 (648)
Q Consensus 111 --~f~rT~~~~~~~~ 123 (648)
.|..+.-+.|.+.
T Consensus 77 ~~i~~qS~~~~~~el 91 (322)
T 3tzl_A 77 SVFWLQSDVKEVMEL 91 (322)
T ss_dssp SEEEEGGGCTHHHHH
T ss_pred eEEEECCcchhHHHH
Confidence 3444444555443
No 78
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=89.05 E-value=0.29 Score=51.15 Aligned_cols=66 Identities=17% Similarity=0.044 Sum_probs=37.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-c-CCc-cccccC-CcccChhhhhhcCCCchhHHHHHhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ESG-KFSKSK-GIGVFGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~-~G~-KMSKS~-gN~I~~~~~l~~~~~~d~lR~~ll~ 383 (648)
+..+|.|+.+++..- --+....|..+. ..++.+..|. + +|. |||||. +|.|++.| +++.++=-+.+
T Consensus 203 ~vpgG~DQ~~~l~l~-Rdla~r~~~~~~--~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D------~p~~i~~KI~k 272 (373)
T 3vgj_A 203 ICQLGIDQRKVNMLA-REYCDIKKIKKK--PVILSHGMLPGLLEGQEKMSKSDENSAIFMDD------SESDVNRKIKK 272 (373)
T ss_dssp EECCBGGGHHHHHHH-HHHHHHHTCSCC--CEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC------CHHHHHHHHHH
T ss_pred EEEcchhhHHHHHHH-HHHHHHhCCCCC--ceEEeCCeeecCCCCCCCCcCCCCCCeeecCC------CHHHHHHHHHh
Confidence 678999997654321 112222343211 1344556664 5 885 999999 58888754 24556555544
No 79
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=88.99 E-value=1 Score=47.27 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=22.6
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN~I~~~~ 366 (648)
+..+|.|+-+.... =--+....|. +.| .++.+-+|. ++| .|||||.+|.|++.|
T Consensus 227 lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p-~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 227 LIPQAIDQDPYFRL-TRDIAPRLGY--LKP-AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEGGGHHHHHH-HHHTHHHHTC--CCC-EEEEECCCCCC-------------CCBTTC
T ss_pred EEEeccchHHHHHH-HHHHHHHcCC--CCc-eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 67899999654321 1111122332 223 344556664 788 799999999998764
No 80
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=88.95 E-value=0.56 Score=50.59 Aligned_cols=75 Identities=9% Similarity=0.006 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc--cchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE--YGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 21 ~~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~--~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
+++++|.+++ -|+ |.+||||..+ +-+.+++++..|+.++++.|-.+ .|+ ..++.+ +.++...
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~----~~~~~~lQ~~~g~~~iilI~D~~a~igd---------~lt~e~-i~~n~~~ 217 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIP----FIFTKWLQDVFNVPLVIQMTDDEKYLWK---------DLTLDQ-AYGDAVE 217 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHH----HHHHHHHHHHHTCCEEEEECHHHHHHHS---------SCCHHH-HHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHH----HHHHHHHHHHhCCcEEEEEecceeeecC---------CCCHHH-HHHHHHH
Confidence 3467777777 556 8999999765 22344433337999877776322 222 355444 4444444
Q ss_pred HHHHHhhcCcccc
Q 006368 98 HKDVYKWFDISFD 110 (648)
Q Consensus 98 ~~~~~~~l~i~~D 110 (648)
+...+-.+|+..+
T Consensus 218 ~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 218 NAKDIIACGFDIN 230 (477)
T ss_dssp HHHHHHTTCCCTT
T ss_pred HHHHHHHhCCCCC
Confidence 5556666777654
No 81
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=88.94 E-value=0.35 Score=52.18 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=31.8
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+|.|+.+.. .+=--+....|. +.|. .+.+-+|. ++| .|||||.+| .|++.|
T Consensus 309 vG~DQ~~~i-~l~Rdla~r~~~--~~p~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 309 CAIDQDPYF-RMTRDVAPRIGY--PKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEGGGHHHH-HHHHHHGGGGTC--CCCE-EEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred ccccHHHHH-HHHHHHHHHhCC--CCce-eeecccccCCCCCccccCCCCCCCceeecC
Confidence 799996543 221122333443 3443 35556664 899 899999999 888764
No 82
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=88.57 E-value=0.71 Score=48.24 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHH---HHHHHHH-HHH
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI---CDKYHVI-HKD 100 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~---~~~~~~~-~~~ 100 (648)
.|.+++ -|+|.+||||+.+ .+ .+.++++ .|++++++.|- .|+.-. . -..+.++ ...+.+. +..
T Consensus 37 ~vy~G~-~PTG~lHlG~~~~-~l---~~~~~~q-~g~~~i~~I~D-~ha~t~--~----~~~~~~l~~~~~~~~~~~i~~ 103 (372)
T 1n3l_A 37 KIYWGT-ATTGKPHVAYFVP-MS---KIADFLK-AGCEVTILFAD-LHAYLD--N----MKAPWELLELRVSYYENVIKA 103 (372)
T ss_dssp EEEEEE-CCSSCCBGGGHHH-HH---HHHHHHH-TTCEEEEEECH-HHHHHT--T----TTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCc-CCCCcccHHHHHH-HH---HHHHHHH-CCCCEEEEEcC-CceeeC--C----CCCHHHHHHHHHHHHHHHHHH
Confidence 344444 2668999999775 23 3555555 69998776662 111100 0 0123333 2333333 555
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
.+.++|+.++
T Consensus 104 ~lla~Gldp~ 113 (372)
T 1n3l_A 104 MLESIGVPLE 113 (372)
T ss_dssp HHHHHTCCCT
T ss_pred HHHHcCCChh
Confidence 6788899886
No 83
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=88.44 E-value=1.1 Score=47.87 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCC-CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006368 21 KRNILITSALPYVN-NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (648)
Q Consensus 21 ~~~~~it~~~Pyvn-g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~ 99 (648)
+++++|.+++ -|+ |.+||||..+ +-.++++++..|..+.+..| ++ .....+...++. -+.++...+.
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~----~~~l~~lQ~~~g~~v~I~Ig-----D~-~a~~~r~~lt~E-~I~~n~~~~~ 156 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLP----FIFTKYLQDAFKCYVVIQIT-----DD-EKFLRNRSLSYA-EVDSYTRENI 156 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHH----HHHHHHHHHHHTCEEEEEEC-----HH-HHHHHCTTCCHH-HHHHHHHHHH
T ss_pred CCCeEEEecC-CCCCCCccHHHHHH----HHHHHHHHHccCceEEEEee-----Cc-HHhhcccCCCHH-HHHHHHHHHH
Confidence 3567777877 566 8999999654 44455555555877777533 33 111122245654 4555556677
Q ss_pred HHHhhcCcccc
Q 006368 100 DVYKWFDISFD 110 (648)
Q Consensus 100 ~~~~~l~i~~D 110 (648)
..+-++|+..+
T Consensus 157 ~~~lA~GlDpe 167 (451)
T 3foc_A 157 KDIIACGFDPD 167 (451)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCCC
Confidence 77788888765
No 84
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=87.65 E-value=0.93 Score=47.57 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=24.3
Q ss_pred CcceEEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 305 NVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 305 ~~~~i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
|+..+..+|.|+.+.+.. =--+....+. +.| .++.+-+|. ++| .|||||.+| .|++.|
T Consensus 219 di~~lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p-~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 219 DIHCLVPHAIDQDPYFRM-VRDVAPRLGY--LKP-SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp CCCEEEEEEGGGHHHHHH-HHHHTGGGTC--CCC-EEEEECCCCC-------------CCCCBTTC
T ss_pred CCceecccccchHHHHHH-HHHHHHHcCC--CCc-eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 443356899999654321 1112223333 233 344556664 789 799999988 787754
No 85
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=87.62 E-value=0.85 Score=48.51 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=27.9
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+..+|.|+.+.... =--+....|. +.|. .+.+.+|. ++| .|||||.+| .|++.|
T Consensus 252 lvp~G~DQ~~~i~l-~Rdla~r~~~--~~p~-~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 252 LIPCAIDQDPYFRV-CRDVADKLKY--SKPA-LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHTS--CCCE-EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred EEEeccCcHHHHHH-HHHHHHHhCC--CCce-eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 56699999654321 1112223343 3443 45556664 899 899999999 888765
No 86
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=87.29 E-value=0.62 Score=48.68 Aligned_cols=76 Identities=12% Similarity=-0.025 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHH----HHHHHHHHH
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC----DKYHVIHKD 100 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~----~~~~~~~~~ 100 (648)
.|.+++ -|+|.+||||...+ .-.+++++ ..|++++++.| |.|+.- -.+.|.++.++. ..+...+..
T Consensus 35 ~vy~G~-~PTg~lHlG~yl~~---l~~~~~lQ-~~G~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~~ 104 (375)
T 2cyc_A 35 QHYIGF-EISGYIHLGTGLMA---GAKIADFQ-KAGIKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYFKVGMEK 104 (375)
T ss_dssp BEEEEE-CCCSCCBHHHHHHH---HHHHHHHH-HTTCBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTHHHHHHH
T ss_pred EEEeCC-CCCCCcCchHHHHH---HHHHHHHH-HCCCcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333444 45589999994433 33455554 46999888776 222211 112233333332 223334448
Q ss_pred HHhhcCcccc
Q 006368 101 VYKWFDISFD 110 (648)
Q Consensus 101 ~~~~l~i~~D 110 (648)
+|..+|+.++
T Consensus 105 ~~la~G~dp~ 114 (375)
T 2cyc_A 105 SIEVMGGDPK 114 (375)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHhCCCcc
Confidence 8899999876
No 87
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=87.14 E-value=0.8 Score=48.74 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=31.7
Q ss_pred EeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 312 ~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+|.|+.+... +=--+....|. +.|. ++.+-+|. ++| .|||||.+| .|++.|
T Consensus 262 vG~DQ~~~i~-l~Rdla~r~~~--~~P~-~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 262 CAIDQDPYFR-MTRDVAPRIGY--PKPA-LLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEGGGHHHHH-HHHHHGGGGTC--CCCE-EEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred eehhhHHHHH-HHHHHHHHhCC--CCce-EeecccccCCCCCccccCCCCCCCeeeccC
Confidence 7999964432 11122233342 3443 35556664 899 899999999 898764
No 88
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=86.84 E-value=0.46 Score=49.18 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+..|.+++ -|+|.+||||... +.-.+++++ ..|++++++.| |.|+.- -...|.++. -+.++...+.+.+
T Consensus 40 ~~~vy~G~-~PTg~lHlGhyl~---~l~~~~~lQ-~~G~~~~~~i~-D~~a~~----~~~~~~~~e-~i~~~~~~~~~~~ 108 (348)
T 2j5b_A 40 IFTAYNGF-EPSGRIHIAQALI---TVMNTNNMI-ECGGQMIIYIA-DWFAKM----NLKMNGDIN-KIRELGRYFIEVF 108 (348)
T ss_dssp CEEEEEEE-CCCSSCBHHHHHH---HHHHHHHHH-HTTEEEEEEEC-HHHHHH----TTGGGGCHH-HHHHHHHHHHHHH
T ss_pred CCEEEecc-CCCCCCchhHHHH---HHHHHHHHH-HcCCcEEEEec-cchhhh----CCCCCCCHH-HHHHHHHHHHHHH
Confidence 34444544 4559999999333 234455555 45999888776 223211 111123443 3444555666667
Q ss_pred hhcCcccc
Q 006368 103 KWFDISFD 110 (648)
Q Consensus 103 ~~l~i~~D 110 (648)
..+|+..+
T Consensus 109 la~Gldp~ 116 (348)
T 2j5b_A 109 KACGINLD 116 (348)
T ss_dssp HHTTCCGG
T ss_pred HHhcCCcc
Confidence 77777764
No 89
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=86.68 E-value=0.9 Score=46.80 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=48.1
Q ss_pred cCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 006368 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (648)
Q Consensus 28 ~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~ 106 (648)
+++ -|+|.+||||..+ .+ +.+.+++ +++++|..+ |.|..-. ..+|. .+.++......+|.++|
T Consensus 20 sG~-~PTG~lHLGh~vg-~l-----~~~~~lQ~~~~~~~~ia-D~hA~t~-------~~~~~-~~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 20 SGA-QPSGELTIGNYMG-AL-----RQWVQMQDDYDCIYCIV-DLHAITA-------RQDPA-LLRKRTLDTLALYLACG 83 (346)
T ss_dssp EEE-CSCSCCBHHHHHH-TH-----HHHHTTTTTSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHHT
T ss_pred ECc-CCCCcccHHHHHH-HH-----HHHHHHHhhCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHHHHcC
Confidence 443 5669999999876 33 3443444 788877654 5554321 23443 44455566777888899
Q ss_pred cccc---cccCCCchHHHH
Q 006368 107 ISFD---NFGRTSTPQQTE 122 (648)
Q Consensus 107 i~~D---~f~rT~~~~~~~ 122 (648)
+..+ .|..+.-+.|.+
T Consensus 84 lDp~k~~if~qS~v~~~~e 102 (346)
T 3n9i_A 84 IDPKKSTIFVQSHVPEHSQ 102 (346)
T ss_dssp CCTTTSEEEEGGGCTHHHH
T ss_pred CCccceEEEeccccccchH
Confidence 9886 354454455544
No 90
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=86.48 E-value=0.7 Score=47.36 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=39.6
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe--ecee-ecCC--ccccccCCc-c--cChhhhhhcCCCchhH
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV--TEYL-NYES--GKFSKSKGI-G--VFGNDAKDTNIPVEVW 377 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~--hg~l-~~~G--~KMSKS~gN-~--I~~~~~l~~~~~~d~l 377 (648)
+..+|.|+...... +-..+=...|.-++.|..++. +..| .++| +|||||.+| . |++.| +++.+
T Consensus 140 ~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d------~~~~i 213 (328)
T 1i6k_A 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD------DAKTI 213 (328)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC------CHHHH
T ss_pred EEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC------CHHHH
Confidence 78899999764422 111111112222345666654 3444 4788 899999999 6 87754 24455
Q ss_pred HHHHhh
Q 006368 378 RYYLLT 383 (648)
Q Consensus 378 R~~ll~ 383 (648)
+==+.+
T Consensus 214 ~~KI~~ 219 (328)
T 1i6k_A 214 EKKIKS 219 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
No 91
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=86.47 E-value=0.47 Score=49.76 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.5
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccCCc-ccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~gN-~I~~~~ 366 (648)
+-.+|.|+.+.+. +=--+....|. +.|.. +.+.+|. ++| +|||||.+| .|++.|
T Consensus 210 ~vpvG~DQ~~hl~-l~Rdla~r~n~--~~p~~-l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 210 LIPAAIDQDPYWR-LQRDFAESLGY--YKTAA-LHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp EEEEEGGGHHHHH-HHHHHTGGGTS--CCCEE-EEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred eeecccchHHHHH-HHHHHHHHcCC--CCCee-eecccccCCCCCccccccCCCCCeeeCCC
Confidence 3489999975432 21122223342 34443 4466664 788 599999998 887653
No 92
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=85.66 E-value=1.2 Score=46.37 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=43.1
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~ 104 (648)
.|.+++ -|+|.+|||| + ++..-.++++ ...|++|+++.| |-|+.- -...|.++.+ +..+...+.+.|..
T Consensus 58 ~iy~G~-~PTg~lHlG~--g-vl~~~~~~~l-Q~~G~~~~~lIa-D~ha~i----~d~~~~~~~~-i~~~~~~~~~~~~a 126 (373)
T 3vgj_A 58 ICYDGF-EPSGRMHIAQ--G-LLKSIIVNKL-TSNGCTFIFWIA-DWFAHL----NNKMSGDLKK-IKKVGSYFIEVWKS 126 (373)
T ss_dssp EEEEEE-CCCSSCBHHH--H-HHHHHHHHHH-HTTTCEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred eEEeCC-CCCCCceehh--h-HHHHHHHHHH-HHCCCcEEEEEe-cceeEe----cCCCCCCHHH-HHHHHHHHHHHHHH
Confidence 333444 4558999999 3 3322234444 456999988777 444331 0112333333 34444556678889
Q ss_pred cCcccc
Q 006368 105 FDISFD 110 (648)
Q Consensus 105 l~i~~D 110 (648)
+|++.+
T Consensus 127 ~G~dp~ 132 (373)
T 3vgj_A 127 CGMNME 132 (373)
T ss_dssp TTCCST
T ss_pred cCCChh
Confidence 999876
No 93
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=85.64 E-value=0.6 Score=48.30 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=34.9
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe--ecee-ecCC--ccccccCCc---ccChhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV--TEYL-NYES--GKFSKSKGI---GVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~--hg~l-~~~G--~KMSKS~gN---~I~~~~ 366 (648)
+..+|.|+...+.. +-+.+=...|.-++.|..++. +..| .++| +|||||.+| .|++.|
T Consensus 150 ~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 150 IVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred EEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 68899999765422 112211112322335655554 3455 3788 899999999 887765
No 94
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=85.30 E-value=0.58 Score=48.90 Aligned_cols=68 Identities=24% Similarity=0.109 Sum_probs=39.5
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCC---c---ccCceEEeeceee-cCC------------------ccccccC-Cccc
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGEN---W---TLMKTISVTEYLN-YES------------------GKFSKSK-GIGV 362 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~---~---~~p~~~~~hg~l~-~~G------------------~KMSKS~-gN~I 362 (648)
+..+|.|+...+.. =--+....+.. + .++..++.+..|. ++| .|||||. +|.|
T Consensus 183 ~vp~G~DQ~~~i~l-~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I 261 (375)
T 2cyc_A 183 IAHAGMDQRKAHVI-AIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAV 261 (375)
T ss_dssp EEEEEGGGHHHHHH-HHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSC
T ss_pred eecccchHHHHHHH-HHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCee
Confidence 68899999755432 11122223320 0 1112344455664 777 8999999 7888
Q ss_pred ChhhhhhcCCCchhHHHHHhh
Q 006368 363 FGNDAKDTNIPVEVWRYYLLT 383 (648)
Q Consensus 363 ~~~~~l~~~~~~d~lR~~ll~ 383 (648)
++.|- ++.+|=.+.+
T Consensus 262 ~L~d~------p~~i~~KI~~ 276 (375)
T 2cyc_A 262 FIHDS------PEEIRQKLRK 276 (375)
T ss_dssp BTTCC------HHHHHHHHHH
T ss_pred ccCCC------HHHHHHHHHH
Confidence 87642 5666666655
No 95
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=84.95 E-value=1.8 Score=45.53 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=32.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCC--ccccccC-CcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSK-GIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G--~KMSKS~-gN~I~~~~ 366 (648)
+..+|.|+.+.... =--+....+. +.|. .+.+-+|. ++| .|||||. +|.|++.|
T Consensus 246 lvpvG~DQ~~~i~l-~Rdla~r~~~--~~p~-~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 246 LVPAAVDQDPFFRL-ARDKAKALGE--KKPS-SIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHHTC--CCCE-EEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred EEeeccchHHHHHH-HHHHHHHcCC--CCce-eeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 56789999654322 1112222343 2333 34556664 899 6999999 78997764
No 96
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=83.10 E-value=2.2 Score=44.04 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=32.1
Q ss_pred EEEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-c-CC-ccccccC-CcccChhh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ES-GKFSKSK-GIGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~-~G-~KMSKS~-gN~I~~~~ 366 (648)
+..+|.|+...+.. =--+....+.. .| .+..+..|. + +| .|||||. +|.|++.|
T Consensus 189 ~~~~G~DQ~~~i~l-~Rdia~r~~~~--~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 189 ICQLGIDQRKVNML-AIEYANDRGLK--IP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp EECCBGGGHHHHHH-HHHHHHHTTCC--CC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred EEEeccChHHHHHH-HHHHHHHhCCC--Cc-eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 67899999755422 11122233432 23 344455664 6 67 6999999 68897764
No 97
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=82.38 E-value=0.57 Score=45.30 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
.+++.+++++++|+||+..++|+|+ +.|||+|+
T Consensus 140 VGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~G 172 (241)
T 2e8g_A 140 VGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTN 172 (241)
T ss_dssp EEEEEEEEECTTCTTCEEEEEECSS-CEEEEEES
T ss_pred EEEEEEEEECCCCCccEEEEEEeCC-ceEEEEEC
Confidence 3455677889999999999999976 68999985
No 98
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=81.96 E-value=0.91 Score=48.36 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.5
Q ss_pred EEEeccccchhHhHHHHHhhhcCCCcccCceEEeeceee-cCCc--cccccCCc-ccChh
Q 006368 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG--KFSKSKGI-GVFGN 365 (648)
Q Consensus 310 ~~~GkDi~~fH~i~~pa~l~a~g~~~~~p~~~~~hg~l~-~~G~--KMSKS~gN-~I~~~ 365 (648)
-.+|.|+.+.+.. =--+....|. +.| .++.+.+|. ++|. |||||.+| .|.+.
T Consensus 291 VPvG~DQ~~hlel-~Rdia~rfn~--~~p-~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~ 346 (451)
T 3foc_A 291 IASGIEQDPYFRL-ARDLAPRMGH--PKN-AYLLGKFLPGLQGSGTKMSASDPNSAIYLT 346 (451)
T ss_dssp EEECTTTHHHHHH-HHHHTTTTTS--CCC-EEEEECCCCBTTBTTCCCCTTCGGGSCBTT
T ss_pred eeeecchHHHHHH-HHHHHHHhCC--CCC-eeecCCcccCCCCCCCccCCCCCCCeeeec
Confidence 3579999765432 1122223332 233 344556664 7885 99999987 67654
No 99
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=81.56 E-value=1.9 Score=44.63 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=47.0
Q ss_pred EEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 006368 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (648)
Q Consensus 25 ~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~ 103 (648)
.|.+++ -|+|.+||||..+. + ..+.+++ .++++++.| |.|+.-.- ..++.++ .++...+..+|.
T Consensus 24 ~vysG~-~PTG~lHLGn~~g~-l-----~~~~~lQ~~~~~~~~Ia-D~ha~~~~------~~~~e~i-~~~~~~~~~~~l 88 (351)
T 1yi8_B 24 RVLTGD-RPTGALHLGHLAGS-L-----QNRVRLQDEAELFVLLA-DVQALTDH------FDRPEQV-RENVLAVALDYL 88 (351)
T ss_dssp EEEEEE-CCSSCCBHHHHHHT-H-----HHHHHHTSSSEEEEEEC-HHHHHHHH------TTCHHHH-HHHHHHHHHHHH
T ss_pred EEEEee-CCCCCccHHHHHHH-H-----HHHHHHHHhCCeEEEEe-cchhhcCC------CCCHHHH-HHHHHHHHHHHH
Confidence 344443 45699999998863 3 2332222 378866554 44443211 3455444 444556677788
Q ss_pred hcCcccc---cccCCCchHHHHH
Q 006368 104 WFDISFD---NFGRTSTPQQTEA 123 (648)
Q Consensus 104 ~l~i~~D---~f~rT~~~~~~~~ 123 (648)
++|+.++ .|....-+.|.+.
T Consensus 89 a~Gldp~k~~i~~qS~~~~~~el 111 (351)
T 1yi8_B 89 AAGLDPQKTTCVVQSAVPELAEL 111 (351)
T ss_dssp HHTCCTTTEEEEEGGGCTHHHHH
T ss_pred HhCCChhhcEEEEcCchhhHHHH
Confidence 8999886 3433333555443
No 100
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=81.35 E-value=1.7 Score=44.62 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCCcccchhhhhhhhHHHHHHHHHHhCC-CceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc
Q 006368 32 YVNNVPHLGNIIGSVLSADVFARFCRLRG-YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD 110 (648)
Q Consensus 32 yvng~~HlGHa~~~~l~~Di~~R~~r~~G-~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~D 110 (648)
-|+|.+||||..+. + --+.++ +..| ++++++.| |-|+.-.- + +.+|. .+.++......++.++|+.++
T Consensus 9 ~PTg~lHlGh~~g~-l--~~~~~l-Q~~G~~~~~~~Ia-D~~a~~~~----~-~~~~~-~i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 9 QPSGEIHIGNYLGA-I--KQWVAI-GEKLGRDAFFCIV-DYHALTNP----L-AYDPS-TLAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp CSCSCCBHHHHHTH-H--HHHHHH-HHHHGGGEEEEEC-GGGGGGST----T-TSCHH-HHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCcccHHHHHHH-H--HHHHHH-HhcCCCCEEEEEe-CceeecCC----C-CCCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 34588999998863 3 223333 3457 89877665 22332110 0 23333 334444556667788999876
Q ss_pred ---cccCCCchHHHHHH
Q 006368 111 ---NFGRTSTPQQTEAC 124 (648)
Q Consensus 111 ---~f~rT~~~~~~~~v 124 (648)
.|....-+.|.+..
T Consensus 78 k~~i~~qS~~~~~~el~ 94 (337)
T 2el7_A 78 KVTLFVQSHVPEHTELS 94 (337)
T ss_dssp TSEEEEGGGSTHHHHHH
T ss_pred heEEEEcCcchhhHHHH
Confidence 34444445555443
No 101
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=80.26 E-value=2.1 Score=48.23 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 006368 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (648)
Q Consensus 23 ~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~ 102 (648)
+..|.+++ -|+|.+|||| + ++..-.+++ +...|++|+++.| |-|+.-. .+.|.++.+ +..+.....++|
T Consensus 40 ~~~vy~G~-~PTg~lHLG~--~-v~~~~~~~~-lQ~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~ 108 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQ--G-IFKAVNVNK-CTAAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVW 108 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHH--H-HHHHHHHHH-HHHTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHH
T ss_pred CceEEeee-cCCCcchhHh--h-HHHHHHHHH-HHHCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHH
Confidence 44555655 6678999999 3 232222444 4456999988776 4454310 011223222 333445566778
Q ss_pred hhcCcccc
Q 006368 103 KWFDISFD 110 (648)
Q Consensus 103 ~~l~i~~D 110 (648)
..+|+..+
T Consensus 109 lA~GlDp~ 116 (690)
T 3p0j_A 109 KAAGMDMD 116 (690)
T ss_dssp HHTTCCGG
T ss_pred HHcCCChH
Confidence 88888775
No 102
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=79.61 E-value=1 Score=46.43 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=32.1
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEe-e-cee-ec-CC-ccccccCC---cccChhh
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISV-T-EYL-NY-ES-GKFSKSKG---IGVFGND 366 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~-h-g~l-~~-~G-~KMSKS~g---N~I~~~~ 366 (648)
+..+|.|+.+++.. +-+-+=...|...+.|..++. | ..+ -+ +| +|||||.+ |.|++.|
T Consensus 155 ~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 155 QVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 67799999866532 212211112322345555543 2 233 25 67 49999997 6887653
No 103
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=76.89 E-value=1.3 Score=46.87 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=39.4
Q ss_pred EEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCc--ccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 25 LITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTD--EYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 25 ~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D--~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
.|.+++ -|+|+ +||||.. + .-.++++ ...||+++++.|-. -.|+|.-...++.-+++.+ +.++...++++
T Consensus 32 ~iy~G~-dPTg~sLHlGh~v-~---l~~l~~l-Q~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~~q 104 (419)
T 2ts1_A 32 TLYCGF-DPTADSLHIGHLA-T---ILTMRRF-QQAGHRPIALVGGATGLIGDPSGKKSERTLNAKET-VEAWSARIKEQ 104 (419)
T ss_dssp EEEEEE-CCSSSSCBGGGHH-H---HHHHHHH-HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHHHH
T ss_pred EEEEee-CCCCCCccHHHHH-H---HHHHHHH-HHCCCcEEEEEcCceeEecCCCCccccccCCCHHH-HHHHHHHHHHH
Confidence 444554 56688 9999965 2 3345554 45699998877632 2344421222222335444 44555556555
Q ss_pred Hhh
Q 006368 102 YKW 104 (648)
Q Consensus 102 ~~~ 104 (648)
+..
T Consensus 105 ~~~ 107 (419)
T 2ts1_A 105 LGR 107 (419)
T ss_dssp HTT
T ss_pred HHH
Confidence 444
No 104
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=76.81 E-value=1.2 Score=47.33 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=42.0
Q ss_pred EEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc--cchHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006368 24 ILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE--YGTATETKAMEDNCSPKEICDKYHVIHKD 100 (648)
Q Consensus 24 ~~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~--~G~ki~~~A~~~g~~~~e~~~~~~~~~~~ 100 (648)
+.|.+++ -|+|+ +||||.. + .-.+++++ ..||+++++.|-.. .|+|.-...++.-+++.+ +.++...+.+
T Consensus 33 ~~iy~G~-dPTg~sLHlGh~v-~---l~~~~~lQ-~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~-i~~n~~~~~~ 105 (420)
T 1jil_A 33 VTLYCGA-DPTADSLHIGHLL-P---FLTLRRFQ-EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQ-VDKNIEGISK 105 (420)
T ss_dssp CEEEEEE-CCSSSSCBHHHHH-H---HHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHHH
T ss_pred CEEEEee-CCCCCCccHHHHH-H---HHHHHHHH-HCCCcEEEEEcCceeEecCCCccccccccCCHHH-HHHHHHHHHH
Confidence 3444554 56688 9999965 2 33455544 56999988776322 344421122222235444 3445566666
Q ss_pred HHhhcCccc
Q 006368 101 VYKWFDISF 109 (648)
Q Consensus 101 ~~~~l~i~~ 109 (648)
++.++ +++
T Consensus 106 ~~~~~-ld~ 113 (420)
T 1jil_A 106 QMHNI-FEF 113 (420)
T ss_dssp HHHHH-SCC
T ss_pred HHHHH-hCC
Confidence 65555 444
No 105
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=75.64 E-value=1.7 Score=45.34 Aligned_cols=69 Identities=12% Similarity=-0.000 Sum_probs=36.5
Q ss_pred EEEEeccccchhHh---HHHHHhhhcCCCcccCceEEee--cee-ec-CC-ccccccC---CcccChhhhhhcCCCchhH
Q 006368 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT--EYL-NY-ES-GKFSKSK---GIGVFGNDAKDTNIPVEVW 377 (648)
Q Consensus 309 i~~~GkDi~~fH~i---~~pa~l~a~g~~~~~p~~~~~h--g~l-~~-~G-~KMSKS~---gN~I~~~~~l~~~~~~d~l 377 (648)
+..+|.|+...+.. +-+-+=...|...++|..++.. ..+ -+ +| +|||||. +|.|++.| +++.+
T Consensus 174 ~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D------~p~~I 247 (388)
T 3prh_A 174 LVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD------EPKQL 247 (388)
T ss_dssp EECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC------CHHHH
T ss_pred EEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC------CHHHH
Confidence 67899999765432 1111111122223344444321 233 24 44 6999999 89997753 24555
Q ss_pred HHHHhh
Q 006368 378 RYYLLT 383 (648)
Q Consensus 378 R~~ll~ 383 (648)
|==+.+
T Consensus 248 ~kKI~k 253 (388)
T 3prh_A 248 EKKIKS 253 (388)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 544444
No 106
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=72.25 E-value=4.1 Score=43.25 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=25.9
Q ss_pred cEEEEcCCCCCCC-cccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 23 NILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 23 ~~~it~~~Pyvng-~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
++.|.+++ -|+| .+||||.. + .-.+++++ ..|++++++.|
T Consensus 37 ~~~vy~G~-dPTg~sLHlGh~v-~---l~~l~~lQ-~~G~~~i~lIg 77 (432)
T 1h3f_A 37 PLTVKLGA-DPTRPDLHLGHAV-V---LRKMRQFQ-ELGHKVVLIIG 77 (432)
T ss_dssp CCEEEEEE-CTTCCSCBHHHHH-H---HHHHHHHH-HTTCEEEEEEC
T ss_pred CcEEEEcc-cCCCCCCchhhHH-H---HHHHHHHH-HCCCCEEEEEc
Confidence 34444555 5667 59999965 2 34455554 56999888776
No 107
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=71.77 E-value=2.1 Score=43.73 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=25.5
Q ss_pred EEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 24 ILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 24 ~~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
+.|.+++ -|+|. +||||.. + .-.++++ ...|++++++.|
T Consensus 34 ~~vy~G~-~PTg~slHlGh~l-~---l~~~~~l-Q~~g~~~~~~i~ 73 (322)
T 2yxn_A 34 IALVCGF-DPTADSLHLGHLV-P---LLCLKRF-QQAGHKPVALVG 73 (322)
T ss_dssp CEEEEEE-CCSSSSCBHHHHH-H---HHHHHHH-HHTTCEEEEEEC
T ss_pred CEEEEee-cCCCCcccHHHHH-H---HHHHHHH-HHcCCcEEEEEc
Confidence 3444555 56688 9999965 2 3344444 456999988776
No 108
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=70.45 E-value=7.6 Score=43.77 Aligned_cols=68 Identities=9% Similarity=-0.073 Sum_probs=47.9
Q ss_pred CCCcccchhhhhhhhHHHHHHHHHHhC-CCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 006368 33 VNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (648)
Q Consensus 33 vng~~HlGHa~~~~l~~Di~~R~~r~~-G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~~~~l~i~~ 109 (648)
+.|.+||||+.. + --.++.|+++. |++|.++.|-++- . + -.+.|.+ .+-+.++.....++|..+|...
T Consensus 390 s~g~lHLGh~v~-~--~k~l~~~~~~~~g~~v~ilIaD~~A-~--i--~d~~g~~-~e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 390 ALLKVPLDVAEG-M--IKVTKDFIAAHPEGTVTLVLPDWSA-V--A--SDEITGV-EKDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CCSSCBHHHHHH-H--HHHHHHHHHHCSSCEEEEEECTTHH-H--H--TTCTTCC-HHHHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcccchHHH-H--HHHHHHHHHHcCCCeEEEEEecchh-h--h--CCCCCCC-HHHHHHHHHHHHHHHHhcCCCc
Confidence 779999999874 2 56688999887 9999998885541 1 0 0123445 4555666677888899999864
No 109
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=70.31 E-value=2.3 Score=43.98 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=25.1
Q ss_pred EEEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 24 ILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 24 ~~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
+.|.+++ -|+|+ +||||+. ++ -.+++++ ..|++++++.|
T Consensus 47 ~~vy~G~-~PTg~sLHLGhl~-~l---~~~~~lQ-~~G~~~~~lIa 86 (356)
T 2pid_A 47 QTIYCGF-DPTADSLHVGHLL-AL---LGLFHLQ-RAGHNVIALVG 86 (356)
T ss_dssp CEEEEEE-CCSSSSCBHHHHH-HH---HHHHHHH-HTTCEEEEEEC
T ss_pred CEEEEee-cCCCCcccHHHHH-HH---HHHHHHH-HCCCcEEEEEc
Confidence 3444555 56686 9999943 33 2355544 56999988766
No 110
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=70.30 E-value=1.8 Score=49.80 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
.++.++++++++|+||...|+|+|+++.+||+|+-
T Consensus 47 vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~ga 81 (795)
T 3pco_B 47 VGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGA 81 (795)
T ss_dssp EEEEEEEECCTTCSSCCEEEEECSSSSCEEEECCC
T ss_pred EEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeCC
Confidence 45667788999999999999999988999999853
No 111
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=68.48 E-value=3.6 Score=43.09 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=25.0
Q ss_pred EEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 25 LITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 25 ~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
.|.+++ -|+|+ +||||.. + .-.+++++ ..|++++++.|
T Consensus 66 ~vy~G~-dPTg~sLHlGhlv-~---l~~l~~lQ-~~G~~~~~lIg 104 (392)
T 1y42_X 66 GAYVGI-DPTAPSLHVGHLL-P---LMPLFWMY-LEGYKAFTLIG 104 (392)
T ss_dssp EEEEEE-CCCSSSCBGGGHH-H---HHHHHHHH-HHTCEEEEEEC
T ss_pred EEEEee-cCCCCCccHHHHH-H---HHHHHHHH-HcCCcEEEEEc
Confidence 444554 56688 9999966 3 33455554 45999888765
No 112
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=67.35 E-value=3.3 Score=43.87 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=24.8
Q ss_pred EEEcCCCCCCCc-ccchhhhhhhhHHHHHHHHHHhCCCceeeecC
Q 006368 25 LITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (648)
Q Consensus 25 ~it~~~Pyvng~-~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g 68 (648)
.|.+++ -|+|+ +||||+. ++ -.+++++ ..|++++++.|
T Consensus 34 ~iy~G~-dPTg~sLHLGhlv-~l---~~l~~lQ-~~G~~~i~lIg 72 (432)
T 2jan_A 34 TVYAGF-DPTAPSLHAGHLV-PL---LTLRRFQ-RAGHRPIVLAG 72 (432)
T ss_dssp EEEEEE-CCSSSSCBGGGHH-HH---HHHHHHH-HTTCEEEEEEC
T ss_pred EEEEee-CCCCCCcCHHHHH-HH---HHHHHHH-HCCCcEEEEEc
Confidence 444554 56685 9999943 33 3455554 56999988876
No 113
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=66.47 E-value=5.4 Score=41.46 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=29.8
Q ss_pred EEEEeccccchhHhHHHHHhhhcCC--CcccCceEEeeceee-cCCccccccCC-cccChh
Q 006368 309 YQFMGKDNVPFHTVMFPSTLLGTGE--NWTLMKTISVTEYLN-YESGKFSKSKG-IGVFGN 365 (648)
Q Consensus 309 i~~~GkDi~~fH~i~~pa~l~a~g~--~~~~p~~~~~hg~l~-~~G~KMSKS~g-N~I~~~ 365 (648)
+--+|.|+.++... =--+....+. ..+.| ...++-++. ++|.|||||.. |.|.+.
T Consensus 211 ~VPVG~DQ~~hlel-tRdiA~rfn~~~~~~~P-~~~~~~~~pgldG~KmS~S~~ns~I~l~ 269 (372)
T 3a04_A 211 VVPVGADQDPHLRL-TRDLADRMAGVVELERP-ASTYHKLQPGLDGRKMSSSRPDSTIFLT 269 (372)
T ss_dssp EEEEEGGGHHHHHH-HHHHHHHTTTTSCCCCC-EEEEECCCBCTTSSBCCTTSGGGSCBTT
T ss_pred ecccchhhHHHHHH-HHHHHHHhcCcccccCh-hhhhhcccCCCCCCccCCCCCCcccccC
Confidence 34579999765432 1111222221 12233 334455554 89999999984 466543
No 114
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=57.48 E-value=13 Score=34.50 Aligned_cols=38 Identities=5% Similarity=0.187 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCcc
Q 006368 116 STPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRF 153 (648)
Q Consensus 116 ~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 153 (648)
.+.+|....+.+..+|.............|.|..|+-.
T Consensus 127 ~E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~ 164 (191)
T 1lko_A 127 AEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYV 164 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCE
T ss_pred HHHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCE
Confidence 34578899999999987755555556678888775533
No 115
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=48.46 E-value=3.6 Score=47.20 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEecc
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCNG 642 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~~ 642 (648)
.++.++++++++| ||+..|+|+| +.|||+|.-
T Consensus 47 vg~V~~~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga 78 (785)
T 1b7y_B 47 FARVLEAHPIPGT-RLKRLVLDAG--RTVEVVSGA 78 (785)
T ss_dssp EEEEEEEEECTTS-SCEEEEEESS--SEEEEEECC
T ss_pred EEEEEEEEECCCC-eEEEEEEecC--CEEEEEeCC
Confidence 4566778889999 9999999997 789998853
No 116
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=47.74 E-value=14 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=18.1
Q ss_pred cchhhhhhhhHHHHHHHHHH
Q 006368 38 HLGNIIGSVLSADVFARFCR 57 (648)
Q Consensus 38 HlGHa~~~~l~~Di~~R~~r 57 (648)
|+|-+|.+++..|-++++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999864
No 117
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.40 E-value=18 Score=25.24 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=20.7
Q ss_pred cccccCCCCCccccC---CCcCCCCCCCcEE
Q 006368 177 QCENCGKLLNATDLK---DPKCKVCRNAPQI 204 (648)
Q Consensus 177 ~c~~cg~~l~~~el~---~~~~~~~g~~~~~ 204 (648)
.|-.||+.++..||. .-+|..||-.+..
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 466788888888773 4678888977764
No 118
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.07 E-value=12 Score=28.74 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=16.1
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEE
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQI 204 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~ 204 (648)
.|..||..++..+-...+|+.||..+.+
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 4556666644333334578888875543
No 119
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=36.01 E-value=12 Score=34.25 Aligned_cols=23 Identities=26% Similarity=0.637 Sum_probs=0.0
Q ss_pred cccccCCCCCccccCCCcCCCCCCC
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNA 201 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~ 201 (648)
.|..||...+ .++.+ +|+.||.+
T Consensus 140 ~C~~CG~i~~-~~~p~-~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAV-DEAPE-YCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEE-SCCCS-BCTTTCCB
T ss_pred EeCCCCCeeC-CCCCC-CCCCCCCC
No 120
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.33 E-value=9.8 Score=35.45 Aligned_cols=25 Identities=28% Similarity=0.783 Sum_probs=15.1
Q ss_pred cccccCCCCCccccCCCcCCCCCCCc
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~ 202 (648)
.|..||...+..++.+ .|+.||.+-
T Consensus 157 ~C~~CG~~~~g~~~p~-~CP~C~~~k 181 (191)
T 1lko_A 157 RCRNCGYVHEGTGAPE-LCPACAHPK 181 (191)
T ss_dssp EETTTCCEEEEEECCS-BCTTTCCBG
T ss_pred EECCCCCEeeCCCCCC-CCCCCcCCH
Confidence 4555666655334433 788888764
No 121
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=34.89 E-value=15 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=18.4
Q ss_pred CCccccccCCCCCccccCCCcCCCCCCCcE
Q 006368 174 RGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203 (648)
Q Consensus 174 ~g~~c~~cg~~l~~~el~~~~~~~~g~~~~ 203 (648)
+...|..||+.++.. .....|+.||+++.
T Consensus 131 ~~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL-PPGGVCPDCGSKVK 159 (165)
T ss_dssp CCEEESSSCCEESSC-CGGGBCTTTCCBEE
T ss_pred EEEECCCCCCcccCC-CCCCcCCCCCCcce
Confidence 455777788766532 11237888998854
No 122
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.33 E-value=29 Score=24.82 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.1
Q ss_pred CCcCCCCCCC
Q 006368 192 DPKCKVCRNA 201 (648)
Q Consensus 192 ~~~~~~~g~~ 201 (648)
+.+|..||.+
T Consensus 36 dw~CP~Cg~~ 45 (52)
T 1e8j_A 36 DWACPVCGAS 45 (52)
T ss_dssp TCCCSSSCCC
T ss_pred CCcCCCCCCc
Confidence 4578888864
No 123
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=29.61 E-value=38 Score=28.64 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHCCC-EE-------EceEeeeeccCcCccc
Q 006368 119 QQTEACQAIFKKLLDNNW-LI-------ENTMQQPYCDTCKRFL 154 (648)
Q Consensus 119 ~~~~~v~~~~~~L~~~G~-iy-------~~~~~~~y~~~~~~~l 154 (648)
-|.+..+..|..+.+ |- +. +..-..|+|..|+.-.
T Consensus 41 v~~e~l~f~f~~~~~-gt~~~e~a~L~i~~~p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 41 MDKSLFVSAFETFRE-ESLVCKDAILDIVDEKVELECKDCSHVF 83 (119)
T ss_dssp CCHHHHHHHHHHHGG-GCTTTSSCCEEEEEECCEEECSSSSCEE
T ss_pred ccHHHHHHHHHHHHh-CChhhcCcEEEEEeccceEEcCCCCCEE
Confidence 455666667766644 33 32 3334457777765443
No 124
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=29.19 E-value=36 Score=32.77 Aligned_cols=79 Identities=20% Similarity=0.598 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHCCCEEEceEeeeeccCcCc------ccccccc--cccCCCCccccCCCCCccccccCCCCCcc--
Q 006368 119 QQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKR------FLADRLV--EGTCPFEGCNYESARGDQCENCGKLLNAT-- 188 (648)
Q Consensus 119 ~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~------~l~d~~v--~g~cp~~~c~~~~~~g~~c~~cg~~l~~~-- 188 (648)
--+..++.+..+|.+.|.+.... +-|.-+-.. ++.+.+- ...|.. |...-..|..|..|+..+...
T Consensus 133 l~~~eae~lL~~lv~~gWl~~~~--g~~~l~~R~l~El~~~l~~~~~~~i~~C~i--C~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 133 MRKKEAEQVLQKFVQNKWLIEKE--GEFTLHGRAILEMEQYIRETYPDAVKICNI--CHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEET--TEEEECHHHHHHHHHHHHHHCTTTCCBCTT--TCSBCSSCEECSSSCCEECHHHH
T ss_pred CCHHHHHHHHHHHHHhcchhhhC--CEEEecCccHHHHHHHHHHhcCCCCCcCcc--hhhHHhCCcccCccChHHHHHHH
Confidence 34678899999999999998753 444333222 2222221 235777 887777888898888754321
Q ss_pred -----ccCCCcCCCCCCC
Q 006368 189 -----DLKDPKCKVCRNA 201 (648)
Q Consensus 189 -----el~~~~~~~~g~~ 201 (648)
...++.|+.|+++
T Consensus 209 ~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 209 AKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp HHHTTTCSSCBCTTTCCB
T ss_pred HHHHHhCCCCCCCCCCCC
Confidence 1235688888875
No 125
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.16 E-value=23 Score=24.67 Aligned_cols=26 Identities=31% Similarity=0.632 Sum_probs=15.4
Q ss_pred cccccCCCCCcc--------ccC-CCcCCCCCCCc
Q 006368 177 QCENCGKLLNAT--------DLK-DPKCKVCRNAP 202 (648)
Q Consensus 177 ~c~~cg~~l~~~--------el~-~~~~~~~g~~~ 202 (648)
+|..||-.+++. +|. +.+|..||.+-
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBG
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcH
Confidence 455566665542 343 46888888653
No 126
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.17 E-value=34 Score=25.57 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=18.8
Q ss_pred cccccCCCCCccccCCCcCCCCCCCcEEee
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~~~~~ 206 (648)
.|-.||..++......-+|..||..+.+++
T Consensus 23 ~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 23 LCADCGARNTIQAKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp BCSSSCCBCCCCSSSCCCCSSSCCCCCBCC
T ss_pred ECCCCCCeeecCCCCceECCCCCcEEEEEe
Confidence 455677666544434467888888776443
No 127
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.10 E-value=26 Score=25.10 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.3
Q ss_pred CCcCCCCCCC
Q 006368 192 DPKCKVCRNA 201 (648)
Q Consensus 192 ~~~~~~~g~~ 201 (648)
+.+|..||.+
T Consensus 35 dw~CP~Cg~~ 44 (52)
T 1yk4_A 35 DWVCPLCGAP 44 (52)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCCCCCCC
Confidence 4678888865
No 128
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.67 E-value=22 Score=33.39 Aligned_cols=22 Identities=32% Similarity=0.803 Sum_probs=0.0
Q ss_pred cccccCCCCCccccCCC-cCCCCCCC
Q 006368 177 QCENCGKLLNATDLKDP-KCKVCRNA 201 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~-~~~~~g~~ 201 (648)
.|..||..++. ..| .|+.||.+
T Consensus 173 ~C~~CG~i~~g---~~p~~CP~C~~~ 195 (202)
T 1yuz_A 173 LCPICGYIHKG---EDFEKCPICFRP 195 (202)
T ss_dssp ECSSSCCEEES---SCCSBCTTTCCB
T ss_pred EECCCCCEEcC---cCCCCCCCCCCC
No 129
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=25.58 E-value=14 Score=42.51 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=24.4
Q ss_pred HHHHHhhhcccCCCCceeEEEecCCCccceEEec
Q 006368 608 TAEQLKKTKISGENGLCSLQSETSSNEGNQITCN 641 (648)
Q Consensus 608 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~~q~~~~ 641 (648)
.++.++++++ ||+..|+|+|+++.|||+|.
T Consensus 47 vg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~g 76 (795)
T 2rhq_B 47 VGYIQSKEKG----SGNICQVDIGEEEPVQIVCG 76 (795)
T ss_dssp EEEEEEEECS----SSCEEEEECSSSSCEEEECC
T ss_pred EEEEEEEEEE----eEEEEEEEcCCCeEEEEEeC
Confidence 4456666677 99999999998889999884
No 130
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.25 E-value=39 Score=29.57 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=0.0
Q ss_pred cccccCCCCCccc-----------cC---------CCcCCCCCCC-cEEeeccceeee
Q 006368 177 QCENCGKLLNATD-----------LK---------DPKCKVCRNA-PQIRDTNHLFLD 213 (648)
Q Consensus 177 ~c~~cg~~l~~~e-----------l~---------~~~~~~~g~~-~~~~~~~~~f~~ 213 (648)
.|.+||......+ .. ...|+.||++ .....-+..+++
T Consensus 72 ~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el~I~ 129 (139)
T 3a43_A 72 KCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVYVA 129 (139)
T ss_dssp EETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCEEEE
T ss_pred ECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCeEEEE
No 131
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=24.99 E-value=80 Score=32.44 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCC---CcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcc
Q 006368 1 MGSTGEENPAAPPPKLPIPGKRNILITSALPYVN---NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71 (648)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~it~~~Pyvn---g~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~ 71 (648)
|||..+--|..+.+-.... ..++.+.+...+|. +....|=+-. + .--+++.+...|++|.+++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-mmkIl~i~~~~~p~~~~~~~~~GG~~~-~--~~~la~~L~~~G~~V~v~~~~~~ 70 (438)
T 3c48_A 1 MGSSHHHHHHSSGLVPRGS-HMRVAMISMHTSPLQQPGTGDSGGMNV-Y--ILSTATELAKQGIEVDIYTRATR 70 (438)
T ss_dssp ------------------C-CCEEEEECTTSCTTCC-------CHHH-H--HHHHHHHHHHTTCEEEEEEECCC
T ss_pred CCCcccccccccCcccCcc-hheeeeEEeeccccccCCCCCCCCHHH-H--HHHHHHHHHhcCCEEEEEecCCC
Confidence 7877777676666443333 34666666543443 2234443322 2 44577888888999998876543
No 132
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.22 E-value=30 Score=27.32 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=7.9
Q ss_pred CCcCCCCCCCc
Q 006368 192 DPKCKVCRNAP 202 (648)
Q Consensus 192 ~~~~~~~g~~~ 202 (648)
+.+|..||.+-
T Consensus 60 dW~CPvCga~K 70 (81)
T 2kn9_A 60 DWSCPDCGAAK 70 (81)
T ss_dssp TCCCTTTCCCG
T ss_pred CCcCCCCCCCH
Confidence 46888888653
No 133
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.41 E-value=27 Score=27.95 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=7.4
Q ss_pred CCcCCCCCCC
Q 006368 192 DPKCKVCRNA 201 (648)
Q Consensus 192 ~~~~~~~g~~ 201 (648)
+.+|..||.+
T Consensus 68 dW~CPvCga~ 77 (87)
T 1s24_A 68 DWCCPDCGAT 77 (87)
T ss_dssp TCCCSSSCCC
T ss_pred CCCCCCCCCC
Confidence 4678888865
No 134
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.13 E-value=33 Score=24.84 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=7.4
Q ss_pred CCcCCCCCCC
Q 006368 192 DPKCKVCRNA 201 (648)
Q Consensus 192 ~~~~~~~g~~ 201 (648)
+.+|..||.+
T Consensus 36 dw~CP~Cga~ 45 (55)
T 2v3b_B 36 DWVCPDCGVG 45 (55)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 4678888865
No 135
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=22.96 E-value=38 Score=19.85 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=16.1
Q ss_pred cchhhhhhhhHHHHHHHHH
Q 006368 38 HLGNIIGSVLSADVFARFC 56 (648)
Q Consensus 38 HlGHa~~~~l~~Di~~R~~ 56 (648)
|+|-+|.+.+..|.++++.
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 8999999888888888763
No 136
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.81 E-value=56 Score=27.58 Aligned_cols=26 Identities=19% Similarity=0.709 Sum_probs=14.8
Q ss_pred cccccCCCCCccccCCCcCCCCCCCc
Q 006368 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (648)
Q Consensus 177 ~c~~cg~~l~~~el~~~~~~~~g~~~ 202 (648)
.|.+||......+.....|+.||++.
T Consensus 75 ~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeCCCCCCCcCccccCCC
Confidence 56667766555433222677777663
No 137
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.76 E-value=1e+02 Score=26.47 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=47.0
Q ss_pred CcEEEEcCCCCCCCcccchhhhhhhhHHHHHHHHHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 006368 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (648)
Q Consensus 22 ~~~~it~~~Pyvng~~HlGHa~~~~l~~Di~~R~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~~~~~ 101 (648)
+++++.++. |. +|-. ...+++.+++..|++|.+.-. +- ++.++++...+ ..
T Consensus 4 ~~vvla~~~----~d---~Hdi----G~~~v~~~l~~~G~~Vi~lG~-~~--------------p~e~~v~~a~~---~~ 54 (137)
T 1ccw_A 4 KTIVLGVIG----SD---CHAV----GNKILDHAFTNAGFNVVNIGV-LS--------------PQELFIKAAIE---TK 54 (137)
T ss_dssp CEEEEEEET----TC---CCCH----HHHHHHHHHHHTTCEEEEEEE-EE--------------CHHHHHHHHHH---HT
T ss_pred CEEEEEeCC----Cc---hhHH----HHHHHHHHHHHCCCEEEECCC-CC--------------CHHHHHHHHHh---cC
Confidence 456666543 45 4544 478899999999999998754 22 33333332211 11
Q ss_pred HhhcCcccccccCCCchHHHHHHHHHHHHHHHCCC
Q 006368 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNW 136 (648)
Q Consensus 102 ~~~l~i~~D~f~rT~~~~~~~~v~~~~~~L~~~G~ 136 (648)
-+-++++. +...|...+.++.+.|.++|.
T Consensus 55 ~d~v~lS~------~~~~~~~~~~~~i~~l~~~g~ 83 (137)
T 1ccw_A 55 ADAILVSS------LYGQGEIDCKGLRQKCDEAGL 83 (137)
T ss_dssp CSEEEEEE------CSSTHHHHHTTHHHHHHHTTC
T ss_pred CCEEEEEe------cCcCcHHHHHHHHHHHHhcCC
Confidence 12233332 223566778888888888764
No 138
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.76 E-value=39 Score=25.81 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=7.5
Q ss_pred CCcCCCCCCC
Q 006368 192 DPKCKVCRNA 201 (648)
Q Consensus 192 ~~~~~~~g~~ 201 (648)
+.+|..||.+
T Consensus 40 dw~CP~Cga~ 49 (70)
T 1dx8_A 40 SFMCPACRSP 49 (70)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCCCCCCC
Confidence 4678888865
No 139
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.57 E-value=41 Score=24.32 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=7.6
Q ss_pred CCcCCCCCCC
Q 006368 192 DPKCKVCRNA 201 (648)
Q Consensus 192 ~~~~~~~g~~ 201 (648)
+.+|..||..
T Consensus 36 dw~CP~Cg~~ 45 (54)
T 4rxn_A 36 DWVCPLCGVG 45 (54)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 4688888865
No 140
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=20.02 E-value=93 Score=23.77 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHhCCCceeeecCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Q 006368 55 FCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (648)
Q Consensus 55 ~~r~~G~~v~~v~g~D~~G~ki~~~A~~~g~~~~e~~~~~~~~ 97 (648)
+++.+|.+.+-..|. .+..++.+|...|+++.++.+...+.
T Consensus 24 vf~~~G~~c~~C~~a--~~~tL~~Aa~~~gid~~~ll~~Ln~~ 64 (73)
T 2k5e_A 24 VLRSYNLGCIGCMGA--QNESLEQGANAHGLNVEDILRDLNAL 64 (73)
T ss_dssp HHHHTTGGGGGTTTG--GGSBHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCcc--ccccHHHHHHHcCCCHHHHHHHHHHH
Confidence 344556543333332 34668899999999999988776543
Done!