RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006368
(648 letters)
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 1304 bits (3377), Expect = 0.0
Identities = 517/617 (83%), Positives = 564/617 (91%), Gaps = 2/617 (0%)
Query: 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYI 66
E+ PPKLPIPGKRNILITSALPYVNNVPHLGNIIG VLSADVFAR+CRLRGYNAIYI
Sbjct: 2 EDEGKSPPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYI 61
Query: 67 CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126
CGTDEYGTATETKA+E+NC+PKEICDKYH IHK+VY WFDISFD FGRTSTPQQTE CQA
Sbjct: 62 CGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQA 121
Query: 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLN 186
IFKKL++NNWL ENTMQQ YCDTC++FLADRLVEGTCP EGCNY+SARGDQCE CGKLLN
Sbjct: 122 IFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLN 181
Query: 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWL 246
T+L DPKCKVC+N P+IRDT+HLFL+LP L++KL EYIN SVAG WSQNAIQ T+AWL
Sbjct: 182 PTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWL 241
Query: 247 KEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENV 306
++GLK RCITRDLKWGVPVPLE++K+KVFYVWFDAPIGYVSIT+CYT EWE+WWKNPENV
Sbjct: 242 RDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENV 301
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
ELYQFMGKDNVPFHTVMFPSTLLGTGENWT+MKTISVTEYLNYE GKFSKSKG+GVFGND
Sbjct: 302 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGND 361
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK N+ELLNNLGNFINRVLSFIAKPPG
Sbjct: 362 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPG 421
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
GYGS++PDA GAESH LTK LAEKVGK VEQY+EAMEKVKLKQGLKTAMSISSEGNAYL
Sbjct: 422 AGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYL 481
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
QESQFWKLYKED+PSC+IV++TSVGLV+LLACLLEPFMPSFS EV KQLNL PE +SL
Sbjct: 482 QESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLS 540
Query: 547 DEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAA 606
DEKG+V RA+RPWE++PAGHKIG+P PLFKELKD+EVE +R KFAGSQADR RAEA A
Sbjct: 541 DEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAEA 600
Query: 607 -KTAEQLKKTKISGENG 622
K A+QLKK +S
Sbjct: 601 KKLAKQLKKKALSDGGK 617
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 687 bits (1776), Expect = 0.0
Identities = 245/578 (42%), Positives = 343/578 (59%), Gaps = 31/578 (5%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
ILITSA PY N HLG++ GS L ADVFAR+ RL+G +++ G+DE+GT E A
Sbjct: 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA 61
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+E+ DKYH HK+ +K IS+D F RT++P E Q F KL +N ++ +
Sbjct: 62 KKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK 121
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T++Q YC + RFL DR VEGTCP+ C YE ARGDQC+NCG LL+ TDL +P+ K+ +
Sbjct: 122 TIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDNCGALLDPTDLINPRSKISGS 179
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P+ R+T H FLDLPA +L +I + +G W N + T WLKEGLK R ITRDL
Sbjct: 180 TPEFRETEHFFLDLPAFAERLRAWIES---SGDWPPNVLNFTLNWLKEGLKPRAITRDLD 236
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGK 314
WG+PVP F+ KVFYVWFDA IGY+S + + W+++W +PE + Y F+GK
Sbjct: 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPE-TKSYYFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
DN+PFH++++P+ LLG+GE L I +EYL E GKFSKS+G G++ +DA + P
Sbjct: 296 DNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPP 354
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ RYYL N PE SDT FTW + + N+EL + GN +NRVLSFI K G + P
Sbjct: 355 DYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEK---YFGGIVPP 411
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
G E +L AE + K V E +E + K+ L+ M ++ E N YL E WKL
Sbjct: 412 GELGDEDREL-IAEAEALFKEVG---ELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467
Query: 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDR 554
K D+ + V+ T++ LV LLA LL PF+P + ++ + L +
Sbjct: 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-----------ENIEKL 516
Query: 555 ARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAG 592
+ + GH I P PLFK++ D+++E + G
Sbjct: 517 TWESLKPLLPGHPINKPEPLFKKIDDEQIEEELERLGG 554
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 629 bits (1624), Expect = 0.0
Identities = 217/571 (38%), Positives = 315/571 (55%), Gaps = 31/571 (5%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ IL+T+ALPY N PHLG++ + L+ADV+AR+ RLRGY ++ GTDE+GT E KA
Sbjct: 4 MKKILVTTALPYPNGPPHLGHLY-TYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA 62
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+E+ DK H K+++K +ISFDNF RT++P+ E Q F KL +N +
Sbjct: 63 EKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLR 122
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC +C+RFL DR VEGTCP C E ARGDQCENCG+ L+ T+L +P C +
Sbjct: 123 EYEGLYCVSCERFLPDRYVEGTCP--KCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DL 259
P++R+ H F L ++KL E+ + + W N +LKEGLK ITR DL
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYES-NPDFIWPANRRNEVLNFLKEGLKDLSITRTDL 239
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCY-----TNEWEQWWKNPENVELYQFMGK 314
WG+PVP KV YVWFDA IGY+S +++++W + EL F+GK
Sbjct: 240 DWGIPVPG--DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADD-TELVHFIGK 296
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D + FH V +P+ L+ G L I +L E K SKS+G V ++ + V
Sbjct: 297 DIIRFHAVYWPAMLMAAGLP--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGV 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ RYYL PE SD F+W D + N +L N LGN NR L FI K + +VP
Sbjct: 354 DALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY----FDGVVP 409
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
A GA + + L + +E EAMEK + ++ L+ M+++S N Y+ E WKL
Sbjct: 410 AA-GAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKL 468
Query: 495 YKEDQPS-CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
KED+ + V+ ++ LV +LA LL PFMP + ++ QL L+ +
Sbjct: 469 AKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGA---- 524
Query: 554 RARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
+ + GHK+G P PLF ++++ +E
Sbjct: 525 -----RQPLLPGHKLGPPEPLFPRIEEEAIE 550
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 616 bits (1591), Expect = 0.0
Identities = 193/610 (31%), Positives = 298/610 (48%), Gaps = 53/610 (8%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
R IL+T ALPY N HLG+++ + AD++ R+ R+RG+ +++C D +GT KA
Sbjct: 1 MRKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA 59
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+E+ +YH HK + F ISFDN+G T + + E Q I+ KL +N ++ E
Sbjct: 60 EKEGITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEK 119
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T++Q Y FL DR V+GTCP C E GD CE CG + T+L +PK +
Sbjct: 120 TIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVCGATYSPTELINPKSAISGA 177
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P ++++ H F LP L+E+I +G N WL+EGL+ I+RD
Sbjct: 178 TPVLKESEHFFFKLPRFEEFLKEWITR---SGELQPNVANKMKEWLEEGLQDWDISRDAP 234
Query: 261 W-GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE-----WEQWWKNPENVELYQFMGK 314
+ G +P KVFYVW DAPIGY+S T ++ W+++WK + ELY F+GK
Sbjct: 235 YFGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGK 292
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D + FHT+ +P+ L G G + L + +L E K SKS+G ++ D ++
Sbjct: 293 DIIYFHTLFWPAMLEGAG--YRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDP 349
Query: 375 EVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
+ RYYL PE + D F W D Q + N+EL+ + NF +R FI K + +
Sbjct: 350 DYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK----RFDGKL 405
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
PDA +L + E+ EA E + ++ L+ M+++ N Y+ +++ WK
Sbjct: 406 PDA--LADPELLEEFEAA----AEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWK 459
Query: 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVD 553
L K+D V + L LA L+P +P + LNL+
Sbjct: 460 LAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELT------------ 507
Query: 554 RARRPWEII---PAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAE 610
W+ AGH I LF ++D ++E + A A+A AA A
Sbjct: 508 -----WDDAQQPLAGHPINKFKILFTRIEDKQIEALIEASKEAAA-----AKAAAAAAAA 557
Query: 611 QLKKTKISGE 620
L + I+
Sbjct: 558 PLAEEPIAET 567
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 565 bits (1458), Expect = 0.0
Identities = 225/559 (40%), Positives = 315/559 (56%), Gaps = 34/559 (6%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
ILIT+ALPY N PHLG+ + + ADV+AR+ RLRGY +++CGTDE+GT E KA ++
Sbjct: 1 ILITTALPYANGKPHLGHAY-TTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
+PKE+ DKYH KD +KW +ISFD F RT+ + E Q IF+KL +N ++ E ++
Sbjct: 60 GLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIK 119
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Q YC C+ FL DR VEGTCP C E ARGD CE CG+ L T+L +P+CK+C P+
Sbjct: 120 QLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPE 177
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK-WG 262
+RD+ H F L A +LEE+I +GS + N WLK GLK ITRDL WG
Sbjct: 178 LRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVS---ITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
+PVP + KV YVWFDA IGY+S I S T +W++WW N E+ EL F+GKD V F
Sbjct: 238 IPVPND--PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRF 295
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
HT+ +P+ L+G G L + YL E GK SKS G V +D ++ RY
Sbjct: 296 HTIYWPAMLMGLG--LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRY 352
Query: 380 YLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGA 439
YLL RP D F+W D + N +L N LGN +NR L FI K + ++P +
Sbjct: 353 YLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKY----FNGVLPSEDIT 408
Query: 440 ESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499
+ K L + + + +EQ EA+E + ++ L+ M ++ GN Y+ E++ W+L+K
Sbjct: 409 DEED--KKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFK-QS 465
Query: 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPW 559
P ++ L+ +L+ LL P MP S ++ K LN + E +
Sbjct: 466 PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE--------LEWDFKLKLLE-- 515
Query: 560 EIIPAGHKIGSPNPLFKEL 578
GHK+ PLF ++
Sbjct: 516 -----GHKLNKAEPLFSKI 529
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 534 bits (1377), Expect = 0.0
Identities = 161/398 (40%), Positives = 235/398 (59%), Gaps = 13/398 (3%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
LIT+ALPYVN PH+G++ + + ADV+AR+ RLRGY+ +++ GTDE+GT E A ++
Sbjct: 1 FLITTALPYVNGPPHIGHLY-TTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE 59
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
+P+E+ D+YH K+++K F+ISFD+F RT++ + E Q F KL + + E +
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYE 119
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
YC + +RFL DR VEGTCP C E ARGDQCE CG+ L T+L +P+ + + P+
Sbjct: 120 GWYCVSDERFLPDRYVEGTCP--YCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPE 177
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
+++ H F L ++KL E+I N + +WLKEGLK ITRDL WG+
Sbjct: 178 LKEEEHYFFRLSKFQDKLLEWIKE--NPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGI 235
Query: 264 PVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFH 320
PVP KV YVWFDA IGY+S T + +W+++W + + E+ F+GKD + FH
Sbjct: 236 PVP--GDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFH 293
Query: 321 TVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYY 380
+ +P+ L+ L + +L E GK SKS+G V ++ D V+ RYY
Sbjct: 294 AIYWPAMLM--AAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR-YGVDALRYY 350
Query: 381 LLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVL 418
L PE D F+W D + N+EL N+LGN +NR L
Sbjct: 351 LAREAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 451 bits (1163), Expect = e-156
Identities = 153/373 (41%), Positives = 202/373 (54%), Gaps = 56/373 (15%)
Query: 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME 82
+LIT+ALPYVN VPHLG++ G+VL ADVFAR+ RLRGY+ +++ GTDE+GT E KA E
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVL-ADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE 59
Query: 83 DNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM 142
+ +P+E+CDKYH I KD++KW +ISFD F RT++P+ E Q FKKL +N ++ E
Sbjct: 60 EGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEY 119
Query: 143 QQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAP 202
+ YC +C+RFL P
Sbjct: 120 EGLYCVSCERFL-----------------------------------------------P 132
Query: 203 QIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-KW 261
+ R+ H F L +++L E++ + W +NA +WLKEGLK ITRDL W
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEK-NPDFIWPENARNEVLSWLKEGLKDLSITRDLFDW 191
Query: 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQ-WWKNPENVELYQFMGKDNVPFH 320
G+PVPL KV YVWFDA IGY+S T Y EW WW EL F+GKD + FH
Sbjct: 192 GIPVPL--DPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFH 249
Query: 321 TVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYY 380
+ +P+ LLG G L I YL E K SKS+G V +D + + RYY
Sbjct: 250 AIYWPAMLLGAG--LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYY 306
Query: 381 LLTNRPEVSDTLF 393
LL RPE D+ F
Sbjct: 307 LLRERPEGKDSDF 319
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 296 bits (761), Expect = 4e-93
Identities = 156/577 (27%), Positives = 253/577 (43%), Gaps = 83/577 (14%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IT+ + Y N PH+G+ + L+ADV ARF RLRGY+ ++ GTDE+G + KA
Sbjct: 1 KKFYITTPIYYPNGKPHIGHA-YTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE 59
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
E SP+E+ D+ K +++ +IS+D+F RT+ P+ EA Q IF++LL N +
Sbjct: 60 EAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGK 119
Query: 142 MQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC C+ F + L+E +C
Sbjct: 120 YEGWYCVRCEEFYTESELIED------------------------------GYRCPPTGA 149
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA------WLKEGLKVRC 254
+ + F L ++KL E + IQ ++K GLK
Sbjct: 150 PVEWVEEESYFFRLSKYQDKLLELYEAN-------PDFIQPASRRNEVISFVKSGLKDLS 202
Query: 255 ITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENV 306
I+R + WG+PVP K V YVWFDA Y++ +E + ++W P +V
Sbjct: 203 ISRTNFDWGIPVP---GDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYW--PADV 257
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+GKD + FH V +P+ L+ G L K + +L + K SKS G + D
Sbjct: 258 ---HLIGKDILRFHAVYWPAFLMAAGLP--LPKRVFAHGFLTLDGEKMSKSLGNVI---D 309
Query: 367 AKD--TNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
D V+ RY+LL P D F+ + N +L N+LGN R LS IAK
Sbjct: 310 PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK- 368
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
+ VP+ + L E +E+ AM+ + + L+ +++ N
Sbjct: 369 ---NFDGKVPEPGALTEA--DEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANK 423
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
Y+ E W L K D + V+ T + ++ +A LL+P MP + ++ QL ++ +++
Sbjct: 424 YIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRD 483
Query: 545 LCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
A W + G + P P+F L+++
Sbjct: 484 F---------AALSWGRLAPGTTLPKPEPIFPRLEEE 511
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 255 bits (653), Expect = 6e-76
Identities = 164/636 (25%), Positives = 272/636 (42%), Gaps = 132/636 (20%)
Query: 21 KRNILITSALPYVNNVPHLGN----IIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT 76
K+ IT+ + Y N PH+G+ I AD AR+ RL+GY+ ++ GTDE+G
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIA-----ADALARYKRLQGYDVFFLTGTDEHGQKI 57
Query: 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNN- 135
+ A + +P+E D+ K+++K DIS+D F RT+ + + Q IF+KL +
Sbjct: 58 QQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGD 117
Query: 136 --------WLIENTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLN 186
W YC +C+ F + LV+G
Sbjct: 118 IYKGEYEGW---------YCVSCETFFTESQLVDG------------------------- 143
Query: 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ------ 240
KC C ++ F + +++L EY + + IQ
Sbjct: 144 ------GKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEE-------NPDFIQPESRKN 190
Query: 241 -ATHAWLKEGLKVRCITRD-LKWGVPVPLERFKEK-VFYVWFDAPIGYVS---ITSCYTN 294
+ ++K GL+ I+R WG+PVP F K V YVW DA + Y++ S
Sbjct: 191 EMINNFIKPGLEDLSISRTSFDWGIPVP---FDPKHVVYVWIDALLNYITALGYGSDDDE 247
Query: 295 EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKF 354
++++W P +V +GKD + FH + +P L+ G L K + + + GK
Sbjct: 248 LFKKFW--PADV---HLVGKDILRFHAIYWPIMLMALGL--PLPKKVFAHGWWLMKDGKM 300
Query: 355 SKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNEL 406
SKSKG + +G DA RYYLL P SD F+ L + N++L
Sbjct: 301 SKSKGNVVDPEELVDRYGLDA---------LRYYLLREVPFGSDGDFSPEALVERINSDL 351
Query: 407 LNNLGNFINRVLSFIAKPPGQGY-GSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK 465
N+LGN +NR ++ I K Y +P + + L + ++ Y E ME+
Sbjct: 352 ANDLGNLLNRTVAMINK-----YFDGEIPAP--GNVTEFDEELIALAEETLKNYEELMEE 404
Query: 466 VKLKQGLKTAMSISSEGNAYLQESQFWKLYKE--DQPSCSIVMRTSVGLVHLLACLLEPF 523
++ + L+ + S N Y+ E+ W L K+ + + VM + +A LL PF
Sbjct: 405 LQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPF 464
Query: 524 MPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL-KDDE 582
MP S ++ +QL L+ E + W +PAG K+ PLF + ++E
Sbjct: 465 MPETSKKIFEQLGLEEEL---------TSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEE 515
Query: 583 VEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKIS 618
+ + + + GS A E + ++ +K +I+
Sbjct: 516 IAYIKEQMEGS-------APKEPEEKEKKPEKPEIT 544
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 156 bits (395), Expect = 2e-40
Identities = 149/579 (25%), Positives = 246/579 (42%), Gaps = 93/579 (16%)
Query: 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
++T+ L YVN PH+G+ + ++AD ARF RL G I+I GTDE+G T A +
Sbjct: 72 VLTTPLYYVNAPPHMGSAY-TTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG 130
Query: 85 CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144
+P E CD ++ ++K DI++D F RT+ P+ + + ++ N + +
Sbjct: 131 RNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEG 190
Query: 145 PYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
YC C+ + ++ L+E C C V +
Sbjct: 191 LYCVNCEEYKDEKELLENNC-------------------------------CPVHQMPCV 219
Query: 204 IRDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-K 260
R ++ F L + LE+ + N V S+ N +Q+ W+K GL+ I+R L
Sbjct: 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQS---WIKSGLRDFSISRALVD 276
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELY------QFMGK 314
WG+PVP + ++ YVWFDA +GY+S T + +Q +N E + +GK
Sbjct: 277 WGIPVPDD--DKQTIYVWFDALLGYIS---ALTEDNKQ--QNLETAVSFGWPASLHLIGK 329
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGND 366
D + FH V +P+ L+ G L K + +L + K KS G + FG D
Sbjct: 330 DILRFHAVYWPAMLMSAG--LELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPD 387
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
A RY+ L +D ++ N L N +GN +NR L + K
Sbjct: 388 AV---------RYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKK--- 435
Query: 427 QGYGSIVPDAN-GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485
++V D+ AE L T V K VE+ E + L + + I + GN Y
Sbjct: 436 NCESTLVEDSTVAAEGVPLKDT----VEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTY 491
Query: 486 LQESQFWKLYKEDQPSCSIVMRTSV---GLVHLLACLLEPFMPSFSVEVNKQLNLQPEK- 541
+ + W L+K+ S + V ++ ++A L P P S+ + QL ++
Sbjct: 492 MDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQF 551
Query: 542 -HISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELK 579
I+ D K W + G + +P+F ++
Sbjct: 552 NSITWSDTK---------WGGLKGGQVMEQASPVFARIE 581
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 134 bits (341), Expect = 3e-37
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
Query: 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEA 462
N+EL NNLGN +NR L+ +K +G +VP+ G + + L E+ + +E+ EA
Sbjct: 2 NSELANNLGNLVNRTLNMASKY----FGGVVPEFGGLT--EEDEELLEEAEELLEEVAEA 55
Query: 463 MEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPS-CSIVMRTSVGLVHLLACLLE 521
ME+++ ++ L+ M ++ N Y+ E+ WKL KE+ P + V+ + L+ +LA LL
Sbjct: 56 MEELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLS 115
Query: 522 PFMPSFSVEVNKQL 535
PFMP + ++ QL
Sbjct: 116 PFMPETAEKILDQL 129
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 90.2 bits (224), Expect = 1e-19
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 37/207 (17%)
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258
R +R T F D+P + KL + + + +N ++A WL+ L I+R
Sbjct: 131 RGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEA---WLESLLD-WAISRQ 186
Query: 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITS--CYTNEWEQWWKNPENVELYQFMGKDN 316
WG P+P E VF VWFD+ IG + ++ + + +GKD
Sbjct: 187 RYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP-----ADWHLIGKDI 236
Query: 317 VPFHTVMFPSTLLGT-GENWTLMKTISVTEYLNYESG-KFSKSKG--------IGVFGND 366
+ + + L+ GE K + V ++ E G K SKSKG + +G D
Sbjct: 237 LRGWANFWITMLVALFGEIP--PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGAD 294
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLF 393
A RYYL + P D
Sbjct: 295 A---------LRYYLTSLAPYGDDIRL 312
Score = 76.3 bits (188), Expect = 4e-15
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA--- 80
+T+ PY N HLG+ + ++ AD AR+ R+RGY ++ G D +G E KA
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHII-ADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 81 ----------MEDNCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIF 128
E PKE ++ HK+ ++ IS+D + T+ P+ ++A + IF
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 129 KKLLDN 134
+L +
Sbjct: 121 SRLYEK 126
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 50.4 bits (121), Expect = 3e-06
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+ PY + H+G++ + DV AR+ R++GYN ++ G D +G E A++
Sbjct: 38 VLVMFPYPSGALHVGHVRNYTI-GDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKLLDNNWLIENTM 142
P + K K S D + R T P+ + Q F KL +
Sbjct: 97 DPAKWTYYNIAYMKKQLKSLGFSID-WRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEA 155
Query: 143 QQPYCDTCKRFLAD 156
+C LA+
Sbjct: 156 PVNWCPVDGTVLAN 169
Score = 36.9 bits (86), Expect = 0.033
Identities = 48/233 (20%), Positives = 77/233 (33%), Gaps = 62/233 (26%)
Query: 319 FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGV--------FGNDAKDT 370
FH +F L+ E + K I+ L E K SKSKG V +G D
Sbjct: 547 FHKALFDEGLVPKDEPFK--KLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTV-- 602
Query: 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG 430
R Y++ P D W + + F+ RV + + +
Sbjct: 603 -------RLYIMFAAPPEQD--LEW-------SESGVEGARRFLQRVWNLVK----EHLE 642
Query: 431 SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490
+V + + + L + K V + EA Q TA+ +
Sbjct: 643 KLVEELTKEQGKEDRWLLHRTI-KKVTEDFEAR------QTFNTAI------------AA 683
Query: 491 FWKL------YKEDQPSCSIVMRTSV-GLVHLLACLLEPFMPSFSVEVNKQLN 536
+L Y V+R ++ V LLA PF P + E+ ++L
Sbjct: 684 LMELLNALRKYLRRTEGDRKVLREALETWVRLLA----PFAPHIAEELWEELG 732
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 48.8 bits (117), Expect = 4e-06
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
I PY + H+G++ + D+ AR+ R++GYN ++ G D +G E A++
Sbjct: 4 ILVMFPYPSGALHVGHVRTYTI-GDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGR 62
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKL 131
P++ + K+ K S+D + R T P+ + Q +F KL
Sbjct: 63 DPEDWTEYNIKKMKEQLKRMGFSYD-WRREFTTCDPEYYKFTQWLFLKL 110
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 48.4 bits (116), Expect = 7e-06
Identities = 52/288 (18%), Positives = 94/288 (32%), Gaps = 94/288 (32%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90
P V H+G+ + + + D+ AR+ R++GYN ++ GTD G AT+ +
Sbjct: 10 PNVTGSLHMGHALNNTI-QDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKL---GIE 65
Query: 91 CDKYHVIHKD-----VYKW----------------FDISFDNFGRTSTPQQTEACQAIFK 129
H + ++ ++W + + T P + A Q F
Sbjct: 66 GKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFV 125
Query: 130 KLLDN----------NWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179
+L + NW C + ++D V C
Sbjct: 126 RLYEKGLIYRDNRLVNW----------CPKLRTAISDIEV------------------CS 157
Query: 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS-QNA 238
G ++ +P K PQ F+ + L K E + + + +
Sbjct: 158 RSGDVI------EPLLK-----PQW------FVKVKDLAKKALEAVKEGDI--KFVPERM 198
Query: 239 IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286
+ WL E ++ CI+R L WG +P W+ G+
Sbjct: 199 EKRYENWL-ENIRDWCISRQLWWGHRIP----------AWYCKDGGHW 235
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90
N H+G++ V D A+ R GY I D+ G A + + K
Sbjct: 6 ITPNGYLHIGHLRTIVT-FDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAF 64
Query: 91 CDKY-HVIHKDVYKWFDISFDN 111
+++ I +DV F + D
Sbjct: 65 VERWIERIKEDVEYMFLQAADF 86
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 46.7 bits (111), Expect = 4e-05
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
K I S PY + H+G++ ++ DV +R+ R++GYN ++ G D +G E
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTIT-DVLSRYYRMKGYNVLHPIGWDAFGLPAEN 84
Query: 79 KAMEDNCSPKEICDKYHVIHKDVYKW--FDISFDNFGRTSTPQQTEACQAIFKKLLDNNW 136
A++ P + + K + F +D T P+ + Q IF +L +
Sbjct: 85 AAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144
Query: 137 LIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176
+C LA+ V+ +G S RGD
Sbjct: 145 AYVKEADVNWCPNDGTVLANEQVDS----DGR---SWRGD 177
Score = 29.3 bits (66), Expect = 8.6
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 54/199 (27%)
Query: 353 KFSKSKGIGV--------FGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404
K SKSKG G+ +G DA R +++ P ++ +L W N
Sbjct: 605 KMSKSKGNGIDPQEIVESYGADAL---------RLFIMFMGP-IAASL-EW-------NE 646
Query: 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAME 464
L F++RV + + + I + + A A+K + + ++
Sbjct: 647 SGLEGARRFLDRVWNLVYE--------ITGELDAASLTVTALEEAQKELRRD--VHKFLK 696
Query: 465 KV----KLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLL 520
KV + ++ TA+S A ++ KLYK ++++ G V +L
Sbjct: 697 KVTEDLEKRESFNTAIS------AMMELLN--KLYK--AKKEALMLEYLKGFVTVL---- 742
Query: 521 EPFMPSFSVEVNKQLNLQP 539
PF P + E+ ++L +P
Sbjct: 743 SPFAPHLAEELWEKLGSEP 761
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 46.2 bits (110), Expect = 4e-05
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE------------- 77
P + H+G+ + L D+ R+ R++G++ +++ G D +G TE
Sbjct: 32 PNATGLLHIGHALNKTLK-DIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEKKLGIKGKK 90
Query: 78 ------TKAMEDNCSPKEICDKYH-VIHKDVYK---WFDISFDNFGRTSTPQQTEACQAI 127
+ + C +E +Y I + D +D T P A +
Sbjct: 91 DRHKLGREKFREKC--REWKMEYADEIRSQFKRLGVSGD--WDREYFTLDPGLEAAVWRV 146
Query: 128 FKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160
F +L D + + L++ VE
Sbjct: 147 FVRLHDKGLIYRGKKPVNWSPALNTALSEAEVE 179
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA
synthetase (ValS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the isoleucyl
tRNA synthetase [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 45.0 bits (107), Expect = 1e-04
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
P V H+G+ + + D+ AR+ R++GYN +++ GTD G AT+ K
Sbjct: 42 PNVTGSLHIGHALNWSIQ-DIIARYKRMKGYNVLWLPGTDHAGIATQVK 89
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 44.5 bits (106), Expect = 2e-04
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
P V H+G+ + L D+ AR+ R+RGYN ++ GTD G AT+
Sbjct: 42 PNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVV 89
Score = 32.2 bits (74), Expect = 0.98
Identities = 56/258 (21%), Positives = 90/258 (34%), Gaps = 64/258 (24%)
Query: 245 WLKEGLKVRCITRDLKWGVPVPLERFKE-KVFYVWFDAPIGYVSITSCYTNEWEQ----- 298
W+ E ++ CI+R L WG +P+ KE V + P + C E EQ
Sbjct: 392 WM-ENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVL 450
Query: 299 --------WWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN----W---TLMKTISV 343
W + P +P+ LL TG + W +M+ + +
Sbjct: 451 DTWFSSSLWP-------FSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHL 503
Query: 344 TE-------YLNY----ESG-KFSKSKGIGV--------FGNDAKDTNIPVEVWRYYLLT 383
T Y++ E G K SKSKG + +G DA R+ L +
Sbjct: 504 TGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADA---------LRFTLAS 554
Query: 384 NRPEVSDTLFTWADLQAKSNNELLNNLGNFINR-VLSFIAKPPGQGYGSIVP-DANGAES 441
D F ++ N LN L N R VL + + A+
Sbjct: 555 LASPGRDINFDEKRVEGYRN--FLNKLWN-ATRFVLMNLDDLGPDDLDLLALSLADRWIL 611
Query: 442 HQLTKTLAEKVGKYVEQY 459
+L +T ++V + ++ Y
Sbjct: 612 SRLNET-VKEVTEALDNY 628
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 42.7 bits (101), Expect = 6e-04
Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-------D 83
PY N HLG+ + +L D+ R+ ++G+N G D +G E K +
Sbjct: 45 PYANGSIHLGHALNKILK-DIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKK 103
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGR------------TSTPQQTEACQAIFKKL 131
S EI + + K + + F R T P E+ +FK+
Sbjct: 104 EISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEA 163
Query: 132 LDNNWLIENTMQQPYCDTCKRFLADRLVE 160
+ L + C+ LA+ VE
Sbjct: 164 HEKGLLYRGLKPVYWSPRCRTALAEAEVE 192
Score = 32.3 bits (74), Expect = 0.87
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
R T F+ +++++ E I ++ W + WL E CI+R WG+
Sbjct: 418 YRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRF---GNWL-ENRPDWCISRQRYWGI 473
Query: 264 PVPL 267
P+P+
Sbjct: 474 PIPI 477
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 40.6 bits (96), Expect = 0.003
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 23/85 (27%)
Query: 31 PYVNNVPHLGNIIGSVLS---ADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP 87
P V+ H+G+ V S D AR+ R+RGYN + G D+ G TE K
Sbjct: 47 PTVSGSLHIGH----VFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKV------- 95
Query: 88 KEICDKYHVIHKDVYKWFDISFDNF 112
+KY+ I KD DIS + F
Sbjct: 96 ----EKYYGIRKD-----DISREEF 111
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 39.5 bits (93), Expect = 0.004
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
R T F+ + ++++L E + ++ W +N WL E + CI+R WG
Sbjct: 147 YRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRF---GNWL-ENRRDWCISRQRYWGT 202
Query: 264 PVPLERFKEK----------VFYVWFD---APIGYVSITSCYTNEWEQWWKNPENVELYQ 310
P+P+ ++ V VWFD P Y + + NE E +
Sbjct: 203 PIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMP--YAQLHYPFENEDF------EELFPAD 254
Query: 311 FM--GKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGN 365
F+ G D F++++ ST L K + V ++ E G K SKS G V
Sbjct: 255 FILEGSDQTRGWFYSLLLLSTAL---FGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQ 311
Query: 366 DAKDTNIPVEVWRYYLLTNRPEVSDTLF 393
+ D + R ++ ++ D F
Sbjct: 312 EVVDK-YGADALRLWVASSDVYAEDLRF 338
Score = 39.5 bits (93), Expect = 0.004
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
PY N +PH G+ + +L D+ R+ ++GY G D +G E K ++
Sbjct: 10 PYANGLPHYGHALNKILK-DIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 37.1 bits (86), Expect = 0.005
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 409 NLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKL 468
N + R+LSF K G P + + + L ++ +++++ A+E +
Sbjct: 9 AFLNRLYRLLSFFRKALGGT----QPKWDNELLEEADRELLARLQEFIKRTTNALEALDP 64
Query: 469 KQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM 524
++ ++E N YL E + +E + + V+R LV L LL PF
Sbjct: 65 TTAVQELFKFTNELNWYLDELKPALQTEELREAVLAVLRA--ALVVLTK-LLAPFT 117
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 38.8 bits (90), Expect = 0.009
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 5 GEENPAAPPP---KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGY 61
G+E+ PP LP P +T +L HLG+ + + L DV R+ R+ G+
Sbjct: 40 GDEHDRTRPPFSIVLPPPN-----VTGSL-------HLGHALTATLQ-DVLIRWKRMSGF 86
Query: 62 NAIYICGTDEYGTATE 77
N +++ GTD G AT+
Sbjct: 87 NTLWLPGTDHAGIATQ 102
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 38.5 bits (91), Expect = 0.011
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETK 79
D+ R+ R++GYN +++ GTD G AT+
Sbjct: 63 DILIRYKRMQGYNTLWLPGTDHAGIATQMV 92
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong
to two families so broadly different that they are
represented by separate models. This model includes
both archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 37.9 bits (88), Expect = 0.017
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLS-ADVFARFCRLRGYNAIYICG 68
+ +T A PY+N V H G+ + +V ARF R++G N ++ G
Sbjct: 24 REKFFLTMAYPYLNGVMHAGH--CRTFTIPEVSARFERMKGKNVLFPLG 70
Score = 33.6 bits (77), Expect = 0.39
Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 47/180 (26%)
Query: 313 GKDNVP--------FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG----- 359
GKD +P H +FP + W + I V Y+ E K SKSKG
Sbjct: 580 GKDLIPNHLTFYIFHHVAIFPE------KFWP--RGIVVNGYVMLEGKKMSKSKGNVLTL 631
Query: 360 ---IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINR 416
+ FG D V R Y+ V D AD + + L
Sbjct: 632 EQAVEKFGAD---------VARLYIADAAETVQD-----ADWKESEVEGTILRLERLYEF 677
Query: 417 VLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476
+ + G E+ + + L ++ +++ EAME + ++ +K A+
Sbjct: 678 AEEITKESNLE---------TGEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYAL 728
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 36.8 bits (85), Expect = 0.037
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTAT----ETKAMEDNCS 86
P V H+G+ + + + D R+ R+ GYNA+++ G D G AT E K M +
Sbjct: 137 PNVTGALHIGHALTAAIE-DTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHL 195
Query: 87 PKEICDKYHVIHKDVYKWFD 106
+ + + +V+KW D
Sbjct: 196 TRHDIGREEFV-SEVWKWKD 214
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 36.8 bits (86), Expect = 0.041
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 34/171 (19%)
Query: 313 GKDNVP----F----HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
GKD +P F H +FP E W + I V ++ E K SKSKG +
Sbjct: 537 GKDLIPNHLTFFIFNHVAIFPE------EKWP--RGIVVNGFVLLEGKKMSKSKGNVIPL 588
Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
A + +V R YL ++ + D W + + ++ + R +
Sbjct: 589 RKAIEEYGA-DVVRLYLTSSAELLQD--ADW-------REKEVESVRRQLERFYELAKE- 637
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475
++ E + K L ++ + +++ EAME + + ++ A
Sbjct: 638 -------LIEIGGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEA 681
Score = 30.2 bits (69), Expect = 3.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 49 ADVFARFCRLRGYNAIY 65
DV AR+ R+RGYN ++
Sbjct: 12 GDVIARYKRMRGYNVLF 28
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS)
catalytic core domain. This class I enzyme is a monomer
which aminoacylates the 2'-OH of the nucleotide at the
3' of the appropriate tRNA. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding.
Length = 213
Score = 35.2 bits (82), Expect = 0.060
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG-TDEYGTATETKAMEDNCSPKE 89
P V + H+G+ + + DV R+ GY Y+ TD +A E+ S KE
Sbjct: 28 PTVYDYAHIGHA-RTYVVFDVLRRYLEDLGYKVRYVQNITD-IDDKIIKRAREEGLSWKE 85
Query: 90 ICDKY 94
+ D Y
Sbjct: 86 VADYY 90
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 35.6 bits (82), Expect = 0.097
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 38 HLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97
H+G+ G + D+ AR+ R++GYN ++ G D +G E A+E PK K
Sbjct: 127 HVGHPEGYTAT-DILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185
Query: 98 HKDVYKWFDISFDNFGR---TSTPQQTEACQAIFKKLL 132
+ K S+D + R T+ P+ + Q IF +LL
Sbjct: 186 FRSQLKSLGFSYD-WDREISTTEPEYYKWTQWIFLQLL 222
>gnl|CDD|237878 PRK14979, PRK14979, DNA-directed RNA polymerase subunit D;
Provisional.
Length = 195
Score = 34.1 bits (78), Expect = 0.14
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 572 NPLFKELKDDEVEFFRSKFAGSQADRIIRAEAE-----AAKTAEQLKKTKISGEN 621
N ++K++ +DEVEF F A+ I+R+ E A K ++L+ ++S EN
Sbjct: 141 NAVYKQISNDEVEFKVESFGQMDAEDILRSALEILKNKAEKFLQELEGIELSDEN 195
>gnl|CDD|204467 pfam10376, Mei5, Double-strand recombination repair protein. Mei5
is one of a pair of meiosis-specific proteins which
facilitate the loading of Dmc1 on to Rad51 on DNA at
double-strand breaks during recombination. Recombination
is carried out by a large protein complex based around
the two RecA homologues, Rad51 and Dmc1. This complex
may play both a catalytic and a structural role in the
interaction between homologous chromosomes during
meiosis. Mei5 is seen to contain a coiled-coli region.
Length = 212
Score = 33.6 bits (77), Expect = 0.21
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 574 LFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISGENGLCSLQSETSSN 633
L ++ ++ + R K + + ++ E +KK + + + L LQ E +
Sbjct: 134 LEYQVDEESDDLRRLKL-----VEKYEIKNDLSELQELIKKWEKAKQRELEKLQKELAEE 188
Query: 634 EGNQIT 639
EG + T
Sbjct: 189 EGEEFT 194
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 34.1 bits (79), Expect = 0.30
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPK-- 88
PY N H+G+ + +L D+ R+ ++GY+ Y+ G D +G E K + K
Sbjct: 58 PYANGNIHIGHALNKILK-DIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKD 116
Query: 89 ----------EICDKYHVIHKDVYK--------WFDISFDNFGRTSTPQQTEACQAIFKK 130
E C ++ + D K W D ++N +T P E+ FK+
Sbjct: 117 IESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGD--WENPYKTMDPSYEESVWWAFKE 174
Query: 131 LLDNNWLIENTMQQPYCDTCKRFLADRLVE 160
L + L P+ C+ LA+ VE
Sbjct: 175 LYEKGLLYRGYKPVPWSPRCETALAEAEVE 204
Score = 30.3 bits (69), Expect = 4.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 205 RDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVP 264
R T F+ + LR+K+ + IN ++ W +N + E CI+R WGVP
Sbjct: 413 RATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRF---GNMV-ENRPDWCISRQRYWGVP 468
Query: 265 VPL 267
+P+
Sbjct: 469 IPV 471
>gnl|CDD|226354 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 33.4 bits (77), Expect = 0.35
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 306 VELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337
V L F+G PF + S LL EN+TL
Sbjct: 203 VALLAFIG----PFGDFILASLLLRDPENYTL 230
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 33.6 bits (78), Expect = 0.42
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYN 62
P N +PH G+++ + DV R+ ++GY
Sbjct: 50 PTANGLPHYGHLLTRTIK-DVVPRYKTMKGYK 80
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 33.4 bits (76), Expect = 0.42
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE 77
P V H+G+ + L D+ R+ R++G ++I GTD G AT+
Sbjct: 97 PNVTGSLHMGHAMFVTLE-DIMVRYNRMKGRPTLWIPGTDHAGIATQ 142
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 33.1 bits (76), Expect = 0.51
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATET 78
D R+ R++G +++ GTD G AT+
Sbjct: 87 DSLIRYHRMKGDETLWVPGTDHAGIATQV 115
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 32.6 bits (75), Expect = 0.74
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 31 PYVNNVPHLGNI-IGSVL---SADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
PY N GNI IG L DV R ++ G++A Y+ G D +G E K E
Sbjct: 63 PYAN-----GNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY 115
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 31.6 bits (73), Expect = 1.5
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 23/75 (30%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----------ICGTDEYGTATETK 79
P V + H+G+ S + DV R+ R GY Y I +
Sbjct: 31 PTVYDYAHIGHA-RSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKII-----------KR 78
Query: 80 AMEDNCSPKEICDKY 94
A E+ S KE+ ++Y
Sbjct: 79 ANEEGESIKELTERY 93
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 31.0 bits (71), Expect = 1.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG-TDEYGTATETK----AMEDNC 85
P V + H+G+ + + DV R+ R GY Y+ TD + K A E+
Sbjct: 30 PTVYDYAHIGHA-RTYVVFDVLRRYLRYLGYKVTYVRNITD-----IDDKIINRAREEGL 83
Query: 86 SPKEICDKY 94
S +E+ ++Y
Sbjct: 84 SIREVAERY 92
>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis
ThiF/MoeB-like protein; Validated.
Length = 339
Score = 30.7 bits (70), Expect = 2.4
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 169 NYESARGDQCENCGK-----LLNATDLKDPKCKV---C-RNAPQIRDTNHLFLDLPALRN 219
N + + D C +CG+ LN + K C RN QIR + DL L
Sbjct: 231 NVQKLKKDNCPSCGEKALYPYLN----YENTTKTAVLCGRNTVQIRPPHKEEYDLEELAE 286
Query: 220 KLEEYINNMSV 230
L + +++V
Sbjct: 287 LLRDRGLDVNV 297
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 30.9 bits (70), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 254 CITRDLKWGVPVPLERFKEKVFY 276
CI+R WGVP+P VFY
Sbjct: 470 CISRQRTWGVPIP-------VFY 485
>gnl|CDD|236610 PRK09669, PRK09669, putative symporter YagG; Provisional.
Length = 444
Score = 30.1 bits (68), Expect = 3.8
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 13/47 (27%)
Query: 28 SALPYVNNV---PHLG----------NIIGSVLSADVFARFCRLRGY 61
+ L YVN V P L + G++LS + +F R+R +
Sbjct: 251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF 297
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 30.0 bits (68), Expect = 4.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 347 LNYE------SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE 387
YE GK S SKG + +D + P EV RY + +P
Sbjct: 265 FVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTKPN 310
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 29.3 bits (66), Expect = 5.9
Identities = 32/144 (22%), Positives = 44/144 (30%), Gaps = 16/144 (11%)
Query: 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDP 193
L+ + P C C L G C + C CG L++ +
Sbjct: 1 MRCLLCRLLLPPRCWLCLLLL---FFPGLCSGCQADLPLIGN-LCPLCGLPLSSHACRCG 56
Query: 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253
+C P L LR E I+ + G + A L + L
Sbjct: 57 ECL--AKPPPFERLRSLGSYNGPLR----ELISQLKFQGDLDLAKLLAR--LLAKALDDF 108
Query: 254 CITRDLKWGVPVPL--ERFKEKVF 275
DL VPVPL R E+ F
Sbjct: 109 LEKPDLI--VPVPLSPSRLLERGF 130
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 29.0 bits (65), Expect = 6.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 551 DVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIR-AEAEAAKTA 609
V A+ IIP P + +++ + A ++A +II AEA+AA
Sbjct: 10 SVIPAQER-GIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIR 68
Query: 610 EQLKKTKISGE 620
EQ+++ + E
Sbjct: 69 EQIEQERAQWE 79
>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.
Length = 356
Score = 29.3 bits (66), Expect = 7.3
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 35/79 (44%)
Query: 202 PQIRDTNHL--------FLDLPALRNKLEEYINNMSVAG---------SWSQNA------ 238
PQ+ D HL F +P LR Y+ N A WS NA
Sbjct: 196 PQLADNPHLWVLRSLTKFYAIPGLRLG---YLVNSDDAAVARMRRQQMPWSINAFAALAG 252
Query: 239 ---------IQATHAWLKE 248
QAT WL E
Sbjct: 253 EVILQDRAYQQATWQWLAE 271
>gnl|CDD|181618 PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.
Length = 281
Score = 28.8 bits (65), Expect = 8.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 302 NPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337
NP +VE + DNVP T FPS NW L
Sbjct: 164 NPIHVEGF----TDNVPIATAQFPS-------NWEL 188
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 29.2 bits (65), Expect = 9.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 243 HAWLKEGLKVRCITRDLKWGVPVPL 267
H W+K+ K CI+R+ WG P+P+
Sbjct: 562 HNWIKDA-KDWCISRNRYWGTPIPI 585
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.415
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,514,281
Number of extensions: 3121596
Number of successful extensions: 2998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2902
Number of HSP's successfully gapped: 70
Length of query: 648
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 545
Effective length of database: 6,369,140
Effective search space: 3471181300
Effective search space used: 3471181300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)