RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006368
(648 letters)
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 824 bits (2131), Expect = 0.0
Identities = 216/635 (34%), Positives = 328/635 (51%), Gaps = 48/635 (7%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
++ SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+Q YC+ K FL DR V GTCP+ C E +GDQCE CG+ L L +P+C +C
Sbjct: 122 TKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL W
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEK----QPWKPNVKNMVLSWIEEGLEERAITRDLNW 235
Query: 262 GVPVPLER--FKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFM 312
G+PVPL+ K KV YVWF+APIGY+SIT + NEW+++W N + + F+
Sbjct: 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295
Query: 313 GKDNVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
GKDN+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++
Sbjct: 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 355
Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
++ D P + RYYL T PE D+ F+++D + + N EL+NNLGNF++R L+F+ +
Sbjct: 356 HEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
+ +VP+ E +L + E++ K ++ E + + K LK MS++S GN
Sbjct: 415 ----FDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
Y Q WK KED+ + S+ +V L LLEPF+P S ++ LNL K
Sbjct: 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR-- 526
Query: 545 LCDEKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE 602
WE +PAGHK+ P LFK++ DD++ +F + R
Sbjct: 527 --------------WEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARIL 572
Query: 603 AEAAKTAEQLKKTKISGENGLCSLQSETSSNEGNQ 637
+ E + + + +
Sbjct: 573 LDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKL 607
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 782 bits (2022), Expect = 0.0
Identities = 144/573 (25%), Positives = 250/573 (43%), Gaps = 45/573 (7%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ IL+T A PY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 17 AKKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 75
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++
Sbjct: 76 QQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNR 135
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 136 TISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 193
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P +RD+ H F DLP+ L+ + + G+ + W + GL+ I+RD
Sbjct: 194 TPVMRDSEHFFFDLPSFSEMLQAWTRS----GALQEQVANKMQEWFESGLQQWDISRDAP 249
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
+ + K FYVW DAPIG + ++ ++++WK ELY F+GK
Sbjct: 250 Y-FGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 308
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V F ++ +P+ L G+ + + V Y+ K SKS+G + + +
Sbjct: 309 DIVYFLSLFWPAMLEGSN--FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDA 365
Query: 375 EVWRYYLLTN-RPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
+ RYY + D D + N +++N + N +R FI K + ++
Sbjct: 366 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK----RFDGVL 421
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
L + E EA E + + ++ M+++ N Y+ E W
Sbjct: 422 ASEL------ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWV 475
Query: 494 LYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGD 551
+ K++ + + L +L L+P +P + LN +
Sbjct: 476 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT-----------ELT 524
Query: 552 VDRARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
D ++P GHK+ L+ + +VE
Sbjct: 525 WDGIQQP----LLGHKVNPFKALYNRIDMRQVE 553
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 311 bits (798), Expect = 1e-98
Identities = 131/606 (21%), Positives = 232/606 (38%), Gaps = 93/606 (15%)
Query: 1 MGSTGEENPAAPPPKLPIPG---KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCR 57
M + + PG + IT+A+ Y N PH+G+ + D ARF R
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIA-TDAMARFQR 59
Query: 58 LRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST 117
L G + ++ GTDE+G A ++ +P+++ D+ + + + + S D++ RTS
Sbjct: 60 LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSE 119
Query: 118 PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177
+ +A QAI++ ++ N + + Y + + + E
Sbjct: 120 ERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETE----------------- 162
Query: 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237
+ + + F L A ++KL + N +
Sbjct: 163 ----------VRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN-------NPG 205
Query: 238 AIQATH------AWLKEGLKVRCITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSIT 289
I +++K GLK I+R WG+PVP EK V YVW DA Y++
Sbjct: 206 FIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVP---GDEKHVMYVWVDALTNYITAL 262
Query: 290 SCY---TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY 346
Y T+E +W P N +GKD FH V +P+ L+ L K + +
Sbjct: 263 G-YPDTTDERWAYW--PANA---HIIGKDISRFHAVYWPAFLMSAQLP--LPKRVFAHGF 314
Query: 347 LNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADL 398
L K SKS G + +G D RY+L+ P D ++ +
Sbjct: 315 LFNRGEKMSKSVGNVIDPFELVERYGLDQ---------LRYFLMREVPFGQDGSYSHEAI 365
Query: 399 QAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQ 458
++N +L N+LGN R LS IAK VP + K + ++ +E
Sbjct: 366 VNRTNADLANDLGNLAQRSLSMIAK----NCEGKVPQPGAFS--EADKAILDQADAALET 419
Query: 459 YLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLAC 518
+AM+ L L ++ +E N Y + W L K D V+ + ++ +
Sbjct: 420 ARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGI 479
Query: 519 LLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578
+++PF+P + ++ L + + A + G + +P P+F
Sbjct: 480 MVQPFIPQSAEKLLDILAVPAD----------KRQFADVLASPLAGGTDLPAPQPVFPRY 529
Query: 579 KDDEVE 584
+ + +
Sbjct: 530 VEADEQ 535
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 303 bits (777), Expect = 6e-96
Identities = 130/577 (22%), Positives = 224/577 (38%), Gaps = 101/577 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
PK D+ K + I++D+F RT+ + + Q + KK+ + +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC +C+RF + +L + C +
Sbjct: 121 EYEGLYCVSCERFYTE-------------------------------KELVEGLCPIHGR 149
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKVRC 254
+ R + F + R L+EYI + + I+ A L E +
Sbjct: 150 PVERRKEGNYFFRMEKYRPWLQEYIQE-------NPDLIRPEGYRNEVLAMLAEPIGDLS 202
Query: 255 ITRD---LKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVEL 308
I+R + WG+P+P + E V +VWFDA + YVS Y + +W P
Sbjct: 203 ISRPKSRVPWGIPLP---WDENHVTFVWFDALLNYVSALD-YPEGEAYRTFW--PHAW-- 254
Query: 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKG-------- 359
+GKD + H V +P+ L G + + ++V +L G K SK+ G
Sbjct: 255 -HLIGKDILKPHAVFWPTMLKAAGI--PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFAL 311
Query: 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLS 419
+ +G DA RYYLL P DT + L+ + +L ++LGN + R +
Sbjct: 312 LEKYGRDA---------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 420 FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479
+ + +P+ E + + + ++K L+ AM+
Sbjct: 363 MLFRF----AEGRIPEPVAGE-------ELAEGTGLAGRLRPLVRELKFHVALEEAMAYV 411
Query: 480 SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQP 539
N Y+ E + W+L+K++ V+ V + + + LL P MP E+ + L L+
Sbjct: 412 KALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 471
Query: 540 EKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
E + W + LF
Sbjct: 472 EVRLE----------EAERWGLAEPRPIPEEAPVLFP 498
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 300 bits (771), Expect = 3e-94
Identities = 120/622 (19%), Positives = 220/622 (35%), Gaps = 104/622 (16%)
Query: 1 MGSTGEENPAAPPPKLPIPG----KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFC 56
M + + PG ++ T+ + YVN PH+G++ +++ DV R+
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLI-VDVLGRYH 59
Query: 57 RLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTS 116
R++G + GTDE+G A + SP + K ++ + + F RT+
Sbjct: 60 RVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTT 119
Query: 117 TPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARG 175
P + Q I+KKL + + Y + + FL + + +G
Sbjct: 120 NPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR----------- 168
Query: 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235
+ + + L A R +L +Y ++
Sbjct: 169 ------------DGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD-------H 209
Query: 236 QNAIQATH------AWLKEGLKVRCITRD----LKWGVPVPLERFKEK-VFYVWFDAPIG 284
N I +++GL I+R + W +PVP E+ YVW DA
Sbjct: 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVP---GDERHCIYVWLDALFN 266
Query: 285 YVS-----------ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333
Y + T + W P +V +GKD + FH + +P+ L+
Sbjct: 267 YYTGALTRVATDGTETLDEDHHALNRW--PADV---HVVGKDILKFHAIYWPAFLMSAEL 321
Query: 334 NWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNR 385
L + + + + K SKS G FG DA +Y+L+
Sbjct: 322 P--LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDA---------LKYFLMRES 370
Query: 386 PEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLT 445
D ++ ++ A+ N EL + LGN ++R ++ + P+ AE +
Sbjct: 371 NFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN-----VNGMWPEP--AEYSESD 423
Query: 446 KTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIV 505
KTL + ++ L + NAY+ E+ WKL K D V
Sbjct: 424 KTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTV 483
Query: 506 MRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAG 565
+ ++ + + L+P MP + E+ L + + + + + I+ G
Sbjct: 484 LYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENYL---------FGIVKPG 534
Query: 566 HKIGS---PNPLFKELKDDEVE 584
KI +F+++ E
Sbjct: 535 TKIAGLAEGQVVFQKVTLPTEE 556
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 299 bits (767), Expect = 4e-94
Identities = 140/586 (23%), Positives = 218/586 (37%), Gaps = 95/586 (16%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G IT+A+ Y N VPH+G+ + D ARF RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIA-TDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A ++ E+ + + + + + +ISFD F RTS EA +AI+K++ D +
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 140 NTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198
+ + Y +RF + E
Sbjct: 129 DAYKGWYSIRDERFFTENETTEQPDG---------------------------TRIATET 161
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKV 252
+ F L A ++L I +++ GLK
Sbjct: 162 GAPVTWTEEQTYFFRLSAYTDRLLALYEE-------HPEFIGPDARRNEIVSFVSGGLKD 214
Query: 253 RCITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSIT---SCYTNEWEQWWKNPENVE 307
I+R WGVPVP V YVW DA Y++ + + ++W P ++
Sbjct: 215 LSISRTTFDWGVPVP---DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADL- 268
Query: 308 LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG-------- 359
+GKD + FHTV +P+ L+ G L K I +L K SKS G
Sbjct: 269 --HMIGKDIIRFHTVYWPAFLMSAGLP--LPKRIFAHGWLLNRGEKMSKSIGNVVDPVNL 324
Query: 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLS 419
+ FG D RY+LL P D + + + N +L N LGN R LS
Sbjct: 325 VDTFGLDQ---------VRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLS 375
Query: 420 FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479
+AK G+ VPD E L +E+ E + + L+ S+
Sbjct: 376 MVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL 429
Query: 480 SEGNAYLQESQFWKLYK----EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535
N Y + W L K EDQ V+ T++ +V + + LL+P MP + ++ L
Sbjct: 430 GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLL 489
Query: 536 NLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
P I G + +P+ +F ++D
Sbjct: 490 GQ-PTDERDFSAI----------ANRIKPGTSLPAPSGIFPRYQND 524
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 294 bits (755), Expect = 1e-92
Identities = 145/576 (25%), Positives = 237/576 (41%), Gaps = 106/576 (18%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ +T+ + YVN+VPHLG+ ++ AD AR+ RLR Y+ ++ GTDE+G + KA
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIA-ADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
E SPKE+ D+ K ++++ I + F RT+ P + Q +F++ +
Sbjct: 63 EELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLG 122
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC C+ F ++ L E D C + +
Sbjct: 123 EYEGWYCVGCEEFKSEAELAE-------------------------------DHTCPIHQ 151
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKVR 253
+ F L ++KL E + IQ + +++K+GLK
Sbjct: 152 KKCEYIKEPSYFFRLSKYQDKLLELYEK-------NPEFIQPDYRRNEIISFVKQGLKDL 204
Query: 254 CITRD---LKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELY 309
+TR +KWG+PVP F + YVWFDA Y+S ++ E +W P ++
Sbjct: 205 SVTRPRSRVKWGIPVP---FDPEHTIYVWFDALFNYISALE---DKVEIYW--PADL--- 253
Query: 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IG 361
+GKD + FHTV +P+ L+ G L K + + E K SK+ G +
Sbjct: 254 HLVGKDILRFHTVYWPAFLMSLGYE--LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ 311
Query: 362 VFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421
+G D RY+LL P D F+ + + N EL N +GN +RV++
Sbjct: 312 EYGLDE---------VRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMA 362
Query: 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481
K G V A E A+ + ++ Y MEKV + ++ + +S
Sbjct: 363 HK----FLGGEVSGARDEE-------YAKIAQESIKNYENYMEKVNFYKAIEEILKFTSY 411
Query: 482 GNAYLQESQFWKLYKEDQPS-CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPE 540
N Y+ E Q W L KE + V+ V + +L LL P P+ E + L +
Sbjct: 412 LNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEF 471
Query: 541 KHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
+ +P+ +K+G LF
Sbjct: 472 ------------LKELKPYS--KNTYKLGERKILFP 493
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 284 bits (728), Expect = 2e-88
Identities = 109/581 (18%), Positives = 211/581 (36%), Gaps = 65/581 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +TS + YVN PH+G++ +++ DV R+ R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLI-TDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ D S D F RT+ Q + ++ KL +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ Y + + FL + + +G
Sbjct: 127 RYEGWYSISDESFLTPQNITDGVDK-----------------------DGNPCKVSLESG 163
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMS--VAGSWSQNAIQATHAWLKEGLKVRCITR 257
+ + L A R +L E+ + + + + + +++GL ++R
Sbjct: 164 HVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVI---RAVEKGLPDLSVSR 220
Query: 258 D----LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQF-- 311
W +PVP + YVW DA Y++ + +E + ++ +
Sbjct: 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 312 -----MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+GKD + FH + +P+ LL G L K I + + K SKS G +
Sbjct: 279 ADVHVIGKDILKFHAIYWPAFLLSAGL--PLPKKIVAHGWWTKDRKKISKSLGNVFDPVE 336
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
+ + +Y+LL D ++ ++ A+ N EL + LGN + R S
Sbjct: 337 KAEE-FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN--- 392
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
P A + ++L + + +++ + + NAY+
Sbjct: 393 --VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYV 448
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
+ WKL K D V+ ++ V + LL P +P SV + L + +
Sbjct: 449 TDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIE 508
Query: 547 DEKGDVDRARRPWEIIPAGHKIGS---PNPLFKELKDDEVE 584
+ + + +P G ++G LF + + +
Sbjct: 509 NFE---------FGAVPPGTRLGPAVEGEVLFSKRSTENTK 540
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 67.3 bits (164), Expect = 1e-11
Identities = 88/530 (16%), Positives = 168/530 (31%), Gaps = 107/530 (20%)
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ED EI +KY + + V IS E + K + +E
Sbjct: 335 ALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE-----NCGKLLNATDLKDPK 194
+ Y + P+EG + + + +++ K+
Sbjct: 395 QATKTIYK---AEYHKGIFKVP--PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI 449
Query: 195 CKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKV 252
+ A + F+D P + K + + M + + +A WL +
Sbjct: 450 SRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK---- 505
Query: 253 RCITRDLKWGVPVPL------ERFKEKVFYVWFDAPIG---------------------- 284
+ R + G P+P E + Y+ +
Sbjct: 506 KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFD 565
Query: 285 YVSITSCYTNEWEQWWKN---PENVELYQFM-------------GKDNVPFH--TVMFPS 326
Y+ + ++ ++ K P + GKD +P H +F
Sbjct: 566 YIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNH 625
Query: 327 TLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWR 378
+ E+W K I+V + E K SKSKG I G D R
Sbjct: 626 VAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVV---------R 674
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANG 438
Y+++ SD + + + L I R I++
Sbjct: 675 LYIMSLAEHDSDFDWRR---------KEVGKLRKQIERFYELISQFAEYE------VKGN 719
Query: 439 AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKE 497
E + + + ++ K +++ A+E+ + + ++ A SI ++ YL+ +
Sbjct: 720 VELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT-----EGR 774
Query: 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
D + V+RT L + L+ PF P E+ ++L E +SL
Sbjct: 775 DDEAKRYVLRT---LADVWVRLMAPFTPHICEELWEKLG--GEGFVSLAK 819
Score = 55.4 bits (133), Expect = 5e-08
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 31/167 (18%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
P ++ IT A PY++ H+G+ + DV ARF R++GYN ++ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 79 KAM------------------------EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGR 114
A P I + K+ + S D + R
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVD-WSR 148
Query: 115 -----TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156
+ P ++ + F KL + ++++ + + L D
Sbjct: 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 4e-10
Identities = 86/604 (14%), Positives = 168/604 (27%), Gaps = 175/604 (28%)
Query: 77 ETKAMEDNCSPKEI-----CDKYHVIHKD-----VYKWFDISFDNFGRTSTPQQTEACQA 126
+ K ++D PK I D H+I + F +Q E Q
Sbjct: 34 DCKDVQD--MPKSILSKEEID--HIIMSKDAVSGTLRLFWTLLS--------KQEEMVQK 81
Query: 127 IFKKLLDNN--WL---IENTMQQPYCDTCKRFLA--DRLVEGTCPFEGCNYESARGDQCE 179
+++L N +L I+ +QP T + ++ DRL F Y +R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFA--KYNVSRLQPYL 138
Query: 180 N---------------------CGK-LLNATDLKDPKCKVCRNAP-------QIRDTNHL 210
GK + K + + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 211 FLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK--------VRC--ITRDLK 260
L L +++ N + S N H ++ L+ C + ++
Sbjct: 199 LEMLQKLLYQIDP---NWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNV- 253
Query: 261 WGVPVPLERF--KEKVFYVWFDAPI----GYVSITSCYTNEWEQWWKNPENVELY-QFMG 313
F K+ + + T + E L +++
Sbjct: 254 QNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 314 ----------KDNVPFHTVMFPSTL---LGTGENW------TLMKTISVT-EYLN----- 348
P + ++ L T +NW L I + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 349 --YESGKFSKSKGIGVFGNDAKDTNIPVEV----WRYYLLTNRPEVSDTLFTWADLQAKS 402
++ + VF +IP + W + ++ + V L K
Sbjct: 373 KMFDR--------LSVF---PPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 403 NNEL---LNNLGNFINRVLSFIAKPPGQGY--GSIVPDANGAESHQLTKTLAEKVGKYVE 457
E + ++ L K + SIV N ++ + + +Y
Sbjct: 421 PKESTISIPSI------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 458 QYL-------EAMEKVK-----------LKQGLK---TAMSISSEGNAYLQESQFWKLYK 496
++ E E++ L+Q ++ TA + S LQ+ +F+K Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY- 533
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEV--NKQLNLQPEKHISLCDEKGDV-D 553
+ + L + F+P + +K +L I+L E + +
Sbjct: 534 ---------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL---RIALMAEDEAIFE 581
Query: 554 RARR 557
A +
Sbjct: 582 EAHK 585
Score = 41.4 bits (96), Expect = 0.001
Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 72/250 (28%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P LP R +L T+ P +II + D A + + N D+
Sbjct: 314 RPQDLP----REVLTTN--------PRRLSIIAESIR-DGLATWDNWKHVN------CDK 354
Query: 72 YGTATETKAMEDNCSPKEICDKYH---VIHKDVY--------KWFDISFDNFGRTSTPQQ 120
T E+ + P E + V + WFD+ +
Sbjct: 355 LTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-------VM 405
Query: 121 TEACQAIFKKLLDNNWLIENTMQQP--YCDTCKRF-----LADRLVEGTCPFEGCNYESA 173
+ L++ E+T+ P Y + + L +V+ +Y
Sbjct: 406 VVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVD--------HYNIP 456
Query: 174 RGDQCENCGKLLNATD----------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEE 223
+ ++ D LK+ + ++ +FLD L K+
Sbjct: 457 KTFDSDDLIP--PYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 224 YINNMSVAGS 233
+ +GS
Sbjct: 510 DSTAWNASGS 519
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 55.0 bits (132), Expect = 6e-08
Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 95/513 (18%)
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ED EI +KY + + V IS E + K + +E
Sbjct: 335 ALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR---GDQCENCGKLLNATDLKDPKCK 196
+ Y + P+EG + + + G + +
Sbjct: 395 QATKTIYK---AEYHKGIFKVP--PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNV- 448
Query: 197 VCRN-----APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251
+ R I D + P + K + + M + + +A WL +
Sbjct: 449 ISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK--- 505
Query: 252 VRCITRDLKWGVPVPL------------------------------------ERFKEKVF 275
+ R + G P+P E+ + F
Sbjct: 506 -KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFF 564
Query: 276 YVWFDAPIGYVSI---TSCYTNEWEQWWKNPENVELYQFM-------GKDNVPFH--TVM 323
F E + E E + GKD +P H +
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFE--YWYPLDWRCSGKDLIPNHLTFFI 622
Query: 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383
F + E+W K I+V + E K SKSKG + DA + N +V R Y+++
Sbjct: 623 FNHVAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGA-DVVRLYIMS 679
Query: 384 NRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQ 443
SD + + + L I R I++ E
Sbjct: 680 LAEHDSDFDW---------RRKEVGKLRKQIERFYELISQFAEYE------VKGNVELKD 724
Query: 444 LTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSC 502
+ + + ++ K +++ A+E+ + + ++ A SI ++ YL+ ++ D +
Sbjct: 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE-----GRDDEAK 779
Query: 503 SIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535
V+RT L + L+ PF P E+ ++L
Sbjct: 780 RYVLRT---LADVWVRLMAPFTPHICEELWEKL 809
Score = 54.2 bits (130), Expect = 9e-08
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 31/167 (18%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
P ++ IT A PY++ H+G+ + DV ARF R++GYN ++ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 79 KA------------------------MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGR 114
A + P I + K+ + S D + R
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVD-WSR 148
Query: 115 -----TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156
+ P ++ + F KL + ++++ + + L D
Sbjct: 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 8e-07
Identities = 79/466 (16%), Positives = 136/466 (29%), Gaps = 208/466 (44%)
Query: 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYN---- 62
ENP+ P K Y+ ++P +IG V+ + +L G+
Sbjct: 220 ENPSNTPDK---------------DYLLSIPISCPLIG-VIQLAHYVVTAKLLGFTPGEL 263
Query: 63 AIYICGTDEYG----TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP 118
Y+ G + TA A D S+++F +
Sbjct: 264 RSYLKGATGHSQGLVTAVAI-AETD------------------------SWESFFVSVR- 297
Query: 119 QQTEACQAIFKKLLDNNWL-IENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177
+A +F ++ + + Y +T L ++E D
Sbjct: 298 ---KAITVLF-------FIGVRC--YEAYPNTS---LPPSILE---------------DS 327
Query: 178 CEN-CGK---LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLP-------ALRNKLEEYIN 226
EN G +L+ ++L + +V + TN LP +L N
Sbjct: 328 LENNEGVPSPMLSISNL--TQEQV---QDYVNKTNS---HLPAGKQVEISLVNGA----K 375
Query: 227 NMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEK--VFYVWFDAPIG 284
N+ V+G ++ + L+ K + + + +P F E+ F F P+
Sbjct: 376 NLVVSGP--PQSLYGLNLTLR---KAKAPSGLDQSRIP-----FSERKLKFSNRFL-PVA 424
Query: 285 YVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVT 344
PFH S LL + +
Sbjct: 425 --------------------------------SPFH-----SHLLVPASD-------LIN 440
Query: 345 EYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404
+ L + F +AKD IPV Y DT F +DL+ S +
Sbjct: 441 KDLVKNNVSF-----------NAKDIQIPV----Y----------DT-FDGSDLRVLSGS 474
Query: 405 ELLNNLGNFINR---------------VLSFIAKPPGQ--GYGSIV 433
+ + + I R +L F PG G G +
Sbjct: 475 -ISERIVDCIIRLPVKWETTTQFKATHILDF---GPGGASGLGVLT 516
Score = 42.3 bits (99), Expect = 5e-04
Identities = 66/420 (15%), Positives = 138/420 (32%), Gaps = 117/420 (27%)
Query: 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY------LNYESGKFSKS------ 357
++ +++ H + + LL + + + Y K S S
Sbjct: 94 CYLEGNDI--HALA--AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 358 -KG----IGVF---GNDAKDTNIPV----EVWRYYLLTNRPEVSDTLFTWAD-LQ--AKS 402
+G + +F GN T+ ++++ Y V D + A+ L ++
Sbjct: 150 GEGNAQLVAIFGGQGN----TDDYFEELRDLYQTY----HVLVGDLIKFSAETLSELIRT 201
Query: 403 NNELLNNLGNFINRVLSFIAKP---PGQGYGSIVPDA---NGAESHQLT--KTLAEKVGK 454
+ +N +L ++ P P + Y +P + G QL A+ +G
Sbjct: 202 TLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVI--QLAHYVVTAKLLGF 258
Query: 455 YVEQYLEAMEKV-KLKQGLKTA--MSISSEGNAYLQESQ------FW------KLYKEDQ 499
+ ++ QGL TA ++ + ++ + F+ + Y
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY---- 314
Query: 500 PSCSI---VMRTSV----GL-VHLLAC--LLEPFMPSFSVEVNKQLNLQPEKHISLCDEK 549
P+ S+ ++ S+ G+ +L+ L + + + + N L + ISL
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---- 370
Query: 550 GDVDRARRPWEIIPAGH------------KIGSPNPL------FKELKDD-EVEF----- 585
V+ A+ ++ +G K +P+ L F E K F
Sbjct: 371 --VNGAKN---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 586 -FRSKFAGSQADRIIR--AEAEAAKTAEQLKKTKISGENG--LCSLQSETSSNEGNQITC 640
F S +D I + + + A+ ++ +G L L S + I
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Score = 38.1 bits (88), Expect = 0.012
Identities = 43/275 (15%), Positives = 80/275 (29%), Gaps = 128/275 (46%)
Query: 300 WKNPEN--VELYQF----MGKDNVPFHTVMFPSTLLGTG-----ENWTLMKTISVTEYLN 348
W +N + Y F + +N T+ F G EN++ M
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFG----GEKGKRIRENYSAMI--------- 1692
Query: 349 YESGKFSKSKGIGVFGN-DAKDTNI----PVEVWRYYLLTNRPEVSDTLFT--------- 394
+E+ K K +F + T+ LL+ T FT
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-----LLS------ATQFTQPALTLMEK 1741
Query: 395 --WADLQAK------------SNNELLNNLGNF-----INRVLSF--------------- 420
+ DL++K S LG + + V+S
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHS-------LGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 421 IAKPPGQ----GYG-------SIVPDANGAESHQLTKTLAEKVGKYVE---------QY- 459
+A P + YG + + + + + ++ G VE QY
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 460 ----LEAME------------KVKLKQGLKTAMSI 478
L A++ K+ + + L+ ++S+
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSLSL 1888
Score = 36.2 bits (83), Expect = 0.041
Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 76/231 (32%)
Query: 429 YGSI-----VPDANGAESHQL----TKTL----------------AEKVGK---YVEQYL 460
+GS+ VP A+ + QL K L AE VGK YV +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 461 EAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLL 520
E + + Q L + + E+ + L D +H LA L
Sbjct: 73 EPSKVGQFDQVLNLCL------TEF--ENCY--LEGND--------------IHALAAKL 108
Query: 521 EPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRP---WEIIPAGH-KI-------G 569
+ V+ + + + +I+ + + + G+ ++ G
Sbjct: 109 LQENDTTLVKTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 570 SPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISGE 620
+ + F+EL+ + +++ + D I +A+T +L +T + E
Sbjct: 165 NTDDYFEELR----DLYQT-YHVLVGDLIKF----SAETLSELIRTTLDAE 206
Score = 31.9 bits (72), Expect = 0.80
Identities = 45/294 (15%), Positives = 82/294 (27%), Gaps = 115/294 (39%)
Query: 68 GTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW--FDISFDN-------FG----- 113
G D Y T+ + + + D + KD Y + DI +N FG
Sbjct: 1632 GMDLYKTSKAAQDVWNRA------DNHF---KDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 114 ----------RTSTPQQTEACQAIFKKLLDNNWLI------------ENTMQQP------ 145
+ + IFK++ +++ + T QP
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QPALTLME 1740
Query: 146 YCDTCKRFLADR-LVEGTCPFEG----------C-----NYESA------RGDQCENCGK 183
L + L+ F G + ES RG
Sbjct: 1741 KA--AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG-------M 1791
Query: 184 LLNATDLKDPKCK----VCRNAP-QIRDTNHLFLDLPALRNKLE----------EYIN-N 227
+ +D + + P ++ AL+ +E E +N N
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRV----AASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 228 MS-----VAGSWSQNAIQATHAWLKEGLKVRCITRDL-KWGVPVPLERFKEKVF 275
+ AG A+ L +K++ I D+ + + LE + +F
Sbjct: 1848 VENQQYVAAGD--LRALDTVTNVLNF-IKLQKI--DIIELQKSLSLEEVEGHLF 1896
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 40.6 bits (96), Expect = 0.001
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 20/139 (14%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSPKE 89
P N +PH+G+ D+F R+ +RGY A G D +G E + + K
Sbjct: 47 PTANGLPHVGHAQARSYK-DLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKR 105
Query: 90 ICDKYHVI------HKDVYKWFDI---SFDNFGR---------TSTPQQTEACQAIFKKL 131
+ Y + + V+ + + T P E+ K L
Sbjct: 106 EIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165
Query: 132 LDNNWLIENTMQQPYCDTC 150
D L + PYC C
Sbjct: 166 FDRGLLYRDHKVVPYCPRC 184
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus
thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1
PDB: 1ivs_A* 1iyw_A
Length = 862
Score = 39.5 bits (93), Expect = 0.004
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETK 79
D R+ R+RG+ A+++ GTD G AT+
Sbjct: 61 DALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.046
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 14/37 (37%)
Query: 469 KQGLKTAMSISSEGNAYLQESQFWKLYKEDQ-PSCSI 504
KQ LK LQ S KLY +D P+ +I
Sbjct: 19 KQALKK-----------LQAS--LKLYADDSAPALAI 42
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Length = 168
Score = 34.1 bits (79), Expect = 0.065
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 17 PIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68
P+P + N+++T NN +++ S +F +GY + + G
Sbjct: 54 PLPERLNVVLTRRPKTSNN----PSLVFFNGSPADVVKFLEGKGYERVAVIG 101
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.21
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 10/33 (30%)
Query: 162 TCPFEGCN-------YESARGDQ-CENCGKLLN 186
TCP C + GD C CG +L+
Sbjct: 23 TCP--ECKVYPPKIVERFSEGDVVCALCGLVLS 53
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 33.0 bits (76), Expect = 0.32
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY------ICGTDEYGTATETK----A 80
P V N H+GN + + D+ + R GY Y I E K A
Sbjct: 50 PTVYNYAHIGNF-RTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTA 108
Query: 81 MEDNCSPKEICDKY 94
E + EI + +
Sbjct: 109 REKGLTVYEISEFF 122
Score = 31.0 bits (71), Expect = 1.1
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 344 TEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTN--RPEVSDTLFTWADLQAK 401
E+L + K SKS+G + D +D N +RY LT+ R ++ F+ +LQA
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLK---FSLDNLQAS 346
Query: 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLE 461
NL N ++ Y S+ P + L +Y + ++E
Sbjct: 347 KIA--RENLINKLSYF-----------YESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVE 393
Query: 462 AME 464
+
Sbjct: 394 KIS 396
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 32.6 bits (74), Expect = 0.46
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P P+ + N++++ L + II V Y +I G
Sbjct: 113 PKKFKPLSNRINVILSRTLK-KEDFDEDVYIINKVEDL---IVLLGKLNYYKCFILG--- 165
Query: 72 YGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109
G+ + +E K + + D+ F
Sbjct: 166 -GSVVYQEFLEKKL-----IKKIYFTRINSTYECDVFF 197
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 31.4 bits (72), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89
DV AR+ R+ G N + G D +G E A+++N +P
Sbjct: 80 DVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAP 119
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus
thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A*
2byt_A 2v0g_A*
Length = 878
Score = 31.4 bits (72), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89
DV ARF R++GY ++ G D +G E A++ PK+
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKD 99
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.4 bits (68), Expect = 1.2
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 28/106 (26%)
Query: 118 PQQTEACQAIFKKLLDNNWLIENTMQQPYC------------DTCKRFLADRLVEGTCPF 165
QT C F K + + + P + KR + +V+ CP
Sbjct: 31 AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVK--CPN 87
Query: 166 EGCNYESARGD-------------QCENCGKLLNATDLKDPKCKVC 198
EGC ++ C C + + K C
Sbjct: 88 EGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDC 133
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.3
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 435 DANGAESHQLTKTLAEK-VGKYVEQYLEAMEKVK 467
DA Q + A+K + ++ ++ E +EK K
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 30.9 bits (70), Expect = 1.4
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
+ P+ + ++I+S+LP + + ++ + I++CG G
Sbjct: 63 GRRPLKNRIIVVISSSLPQ-DEADPNVVVFRNLEDS--IENLMNDDSIENIFVCG----G 115
Query: 74 TATETKAMEDNCSPKEICDKYHV 96
+ A++DN D+ ++
Sbjct: 116 ESIYRDALKDNF-----VDRIYL 133
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan
binding, bacterial flagellum, flagellar rotation, inner
membrane, membrane; 1.60A {Helicobacter pylori} PDB:
3cyq_B* 3imp_B
Length = 138
Score = 29.6 bits (67), Expect = 1.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 315 DNVPFHTVMFPSTLLGTGENWTL--MKTISVTEYL 347
D+ P F S ++ L + V + L
Sbjct: 46 DDTPLVKTRFKS-------HYELAANRAYRVMKVL 73
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation,
chemotaxis, bacte flagellar motor, membrane, motor
protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A
3s02_A
Length = 166
Score = 30.0 bits (68), Expect = 1.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 315 DNVPFHTVMFPSTLLGTGENWTL--MKTISVTEYL 347
D+ P F S ++ L + V + L
Sbjct: 74 DDTPLVKTRFKS-------HYELAANRAYRVMKVL 101
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation,
chemotaxis, bacte flagellar motor, membrane, motor
protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Length = 193
Score = 30.2 bits (68), Expect = 1.7
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 315 DNVPFHTVMFPSTLLGTGENWTL--MKTISVTEYL 347
D+ P F S ++ L + V + L
Sbjct: 101 DDTPLVKTRFKS-------HYELAANRAYRVMKVL 128
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 31.0 bits (69), Expect = 1.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFA 591
IG + DDE+EF R +
Sbjct: 14 NALIGYDVTDVSNVHDDELEFTRRRLV 40
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 30.1 bits (67), Expect = 2.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 389 SDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427
S+ +F A+S ELL++L F++ + PP
Sbjct: 290 SERVFRIDAYMAQSRGELLHSLEGFLDCS---LVLPPTD 325
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 30.1 bits (67), Expect = 2.4
Identities = 23/223 (10%), Positives = 64/223 (28%), Gaps = 20/223 (8%)
Query: 206 DTNHLFLDLP-ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG-- 262
+ ++ + + +E Y+ + + ++ + +
Sbjct: 78 TSGSFDVNGKENIASFMESYVEQIKENKKLDSTYAGTAEIKQPVVKSLL-DSKGIHYNQG 136
Query: 263 ------VPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN 316
PV + + +V A G V+ + ++ + Y +
Sbjct: 137 NPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNP 196
Query: 317 VPFHTVMFPSTLLGTGENWTLMK---TISVTEYLNYESGKFSKSKGIGV---FGND---A 367
H + + NW + + + + GI V +G A
Sbjct: 197 YFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSA 256
Query: 368 KDTNIPVEVWRYYLLT-NRPEVSDTLFTWADLQAKSNNELLNN 409
+ + + + + +++ F+ D +A+ + EL N
Sbjct: 257 GSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQN 299
>1wte_A ECOO109IR; restriction endonuclease, DNA complex, hydrolase/DNA
complex; 1.90A {Escherichia coli} SCOP: c.52.1.29 PDB:
1wtd_A
Length = 272
Score = 29.7 bits (66), Expect = 2.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 208 NHLFLDLPALRNKLEEYINNMSVAG----SWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
NH +D+ R+K+ Y AG SW N T W+ EG++ D+K
Sbjct: 185 NHNVIDI---RDKVHVY------AGKEFWSWLNNGEAETQHWVLEGIERAVKEADIKEKN 235
Query: 264 PVPLERFKEKV 274
+E+FKE V
Sbjct: 236 KDLIEKFKEHV 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 29.9 bits (68), Expect = 3.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 293 TNEWEQWWKNPENVELYQFMGK----DNVPFHTVMFPSTLLGTGEN 334
T EWE+W NP + Y +M DNV +P+ ++ G +
Sbjct: 639 TGEWEEW-GNPNEYKYYDYMLSYSPMDNV--RAQEYPNIMVQCGLH 681
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 29.8 bits (68), Expect = 3.3
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----------ICGTDEYGTATETK 79
V ++ H+G+ + ++ DV AR+ R GY Y I +
Sbjct: 30 ITVYDLCHIGHG-RTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII-----------KR 77
Query: 80 AMEDNCSPKEICDKY 94
A E+ S + D+
Sbjct: 78 ANENGESFVAMVDRM 92
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 29.5 bits (67), Expect = 3.6
Identities = 5/54 (9%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 107 ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160
++++ PQ++ + L + + ++ + + ++ L E
Sbjct: 127 VTYELSRERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYIL-MLHE 179
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_3
Length = 197
Score = 28.8 bits (64), Expect = 3.7
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKL 131
T ++D P + K D ++ I D R ++ +A I+K +
Sbjct: 120 TYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTV 177
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 29.4 bits (66), Expect = 3.9
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 39/184 (21%)
Query: 12 PPPKLPIPGKRNILITSALPYV-------------NNVPHLGNIIGSVLSA-DVFARFCR 57
PP P+PG+ N++++S L + + + G + A + A
Sbjct: 85 PPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNY 144
Query: 58 LRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHV--IHKDVYK---WFDISFDN- 111
+Y G G + +A+ C + + I +F +
Sbjct: 145 TPSIETVYCIG----GGSVYAEALRPPC--VHLLQAIYRTTIRASESSCSVFFRVPESGT 198
Query: 112 -------FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLA------DRL 158
+ R + ++ + K + N ++ Y R + DR
Sbjct: 199 EAAAGIEWQRETISEELTSANGNETKYYFEKLIPRNREEEQYLSLVDRIIREGNVKHDRT 258
Query: 159 VEGT 162
GT
Sbjct: 259 GVGT 262
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 29.4 bits (66), Expect = 4.0
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P LP+ + N++++ + V + + +A +N I+I G
Sbjct: 78 PKASLPLKNRINVILSRTVKEVPGCL----VYEDLSTA--IRDLRANVPHNKIFILG--- 128
Query: 72 YGTATETKAMEDNCSPKEICDKYHV 96
G+ + +++ CDK ++
Sbjct: 129 -GSFLYKEVLDNGL-----CDKIYL 147
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 29.5 bits (65), Expect = 4.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFA 591
G IG F LKD EV FR K
Sbjct: 149 GVLIGKGLHEFDALKDPEVNEFRRKMR 175
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 29.4 bits (65), Expect = 4.5
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFAG 592
IG F L+D EV FR+K
Sbjct: 14 SLLIGKGLHEFDSLRDPEVNDFRTKMRQ 41
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.0 bits (62), Expect = 6.9
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKL 131
TA K +ED P EI K K + D+ + E+ QA++ KL
Sbjct: 119 TAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKL 176
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 28.0 bits (63), Expect = 10.0
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 17/71 (23%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG-TD------EYGTATETKAMED 83
PY + HLG+ + L+ D+ R G+ Y+ TD E +A D
Sbjct: 49 PY--DATHLGHA-ATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE-------RAERD 98
Query: 84 NCSPKEICDKY 94
+ + D+
Sbjct: 99 GIDWRTLGDRE 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.415
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,912,959
Number of extensions: 595628
Number of successful extensions: 1428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 67
Length of query: 648
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 548
Effective length of database: 3,909,693
Effective search space: 2142511764
Effective search space used: 2142511764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)