Query 006369
Match_columns 648
No_of_seqs 257 out of 856
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 22:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 1E-113 2E-118 902.4 57.9 608 3-618 34-662 (734)
2 PF04130 Spc97_Spc98: Spc97 / 100.0 1.1E-68 2.3E-73 603.7 45.4 505 60-586 1-542 (542)
3 KOG2065 Gamma-tubulin ring com 100.0 1.2E-66 2.6E-71 523.7 40.3 558 57-637 1-632 (679)
4 KOG2000 Gamma-tubulin complex, 100.0 3.8E-54 8.3E-59 479.0 34.0 520 51-614 201-763 (879)
5 KOG4344 Uncharacterized conser 100.0 4.3E-26 9.3E-31 237.7 30.9 550 51-616 289-1052(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 47.1 2.3E+02 0.0051 31.0 11.4 65 50-128 178-246 (653)
7 PLN00032 DNA-directed RNA poly 31.5 57 0.0012 25.7 3.0 50 546-596 10-59 (71)
8 PF08673 RsbU_N: Phosphoserine 24.5 2.2E+02 0.0048 23.0 5.4 45 560-607 30-74 (77)
9 PRK04016 DNA-directed RNA poly 22.5 65 0.0014 24.7 1.9 50 546-596 10-59 (62)
10 KOG4344 Uncharacterized conser 21.8 93 0.002 35.0 3.6 121 135-261 451-581 (1121)
11 PF14966 DNA_repr_REX1B: DNA r 21.6 5E+02 0.011 21.9 8.8 73 105-177 2-80 (97)
12 COG5415 Predicted integral mem 21.3 4.8E+02 0.011 25.3 7.7 85 149-245 11-95 (251)
13 PF10334 DUF2421: Protein of u 20.5 7.8E+02 0.017 24.2 9.8 24 106-129 13-36 (229)
14 PF15027 DUF4525: Domain of un 20.4 4.4E+02 0.0096 23.4 6.7 61 101-163 37-103 (138)
15 PF09164 VitD-bind_III: Vitami 20.4 1.3E+02 0.0028 23.4 3.0 26 565-593 32-57 (68)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=1.1e-113 Score=902.42 Aligned_cols=608 Identities=45% Similarity=0.745 Sum_probs=545.7
Q ss_pred CCCCCCCCCcccCCCc-cC-ccccchhhh-----hh-hccc-cccCcccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 006369 3 MSYPSTPRWNIERPFL-TG-RFHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI 73 (648)
Q Consensus 3 ~~~p~~p~w~~~~p~~-~~-~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dlL~~L~G~~g~~i 73 (648)
++.|..|.|...||++ || .+++..... +. .... ..+.....+++.+|.+.||..+++|+|+||.|++|+|+
T Consensus 34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV 113 (734)
T KOG2001|consen 34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV 113 (734)
T ss_pred cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence 5667889999999999 77 333332211 11 1111 23556677899999999999999999999999999999
Q ss_pred eeecccccCCCCCC---CCCcceEEecCCCCHHHHHHHHHHHhHHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 006369 74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD 150 (648)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~~~g~v~~Al~~al~~~L~~ 150 (648)
+++. ..+... ...+..|.|.|+++-++++++++++|+|.+|..+++||++.+.+.+|.|++|+|+|++++|.+
T Consensus 114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d 189 (734)
T KOG2001|consen 114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD 189 (734)
T ss_pred ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence 9865 222111 013578999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006369 151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC 230 (648)
Q Consensus 151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~ 230 (648)
|+..|.++|++.+.+.+||++||+|++|++..|+.++..++.+..+.++||.+|+.|++++..+.||+.++.++.++++.
T Consensus 190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~ 269 (734)
T KOG2001|consen 190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN 269 (734)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcceecCCCCcceEeeCCccccccccchhhhhhhcccccc-cCCCChhhHHHHHHHHhhhhHHHHHH
Q 006369 231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR 309 (648)
Q Consensus 231 ~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~~~W~~~y~i-~~~vP~Fl~~~a~~Il~~GK~l~~Lr 309 (648)
+++||++|++.|++.|.++|||+||||.++ ...++.+++|+.++||++||+| +|.+|.|+.+.|+|||.||||+||+|
T Consensus 270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR 348 (734)
T KOG2001|consen 270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR 348 (734)
T ss_pred hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999 7778899999999999999999 78999999999999999999999999
Q ss_pred hhCCCCCCCCcccccccc--cCCcccHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 006369 310 ECGHSAQVPTSENSKLLS--FGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIARE 387 (648)
Q Consensus 310 ~~~~~~~~p~~e~~~~~~--f~~~~~~~~~I~~~~~~as~~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~ 387 (648)
+||+.+++|.+.+. +.. ...+..+.+.|+++|.+||..++++|+++++|.+||+++|+||||++|||+.+|+|.+.+
T Consensus 349 eC~~~v~~p~~~n~-~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~e 427 (734)
T KOG2001|consen 349 ECGKIVTIPQSSNE-INDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEE 427 (734)
T ss_pred HhCccCCCCcchhh-hccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 99999988876431 222 223578999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCcccCHHHHHHHHHHHHH-hhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCceee
Q 006369 388 ELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLE 463 (648)
Q Consensus 388 ~L~~~~~~~~~~~L~sll~~alr-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d 463 (648)
||.|+.+.+++.+|+++|+.|+| .|.+..||++++++|++.++++..++..+..++....+ ++...+| ..++|++
T Consensus 428 EL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE 506 (734)
T KOG2001|consen 428 ELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLE 506 (734)
T ss_pred HHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchh
Confidence 99999999999999999999999 78888999999999999999999999887666542221 1112333 5789999
Q ss_pred EEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc-hhhHHHHHHHHHHHHHHHHHHH
Q 006369 464 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNAS-GTAISRSSLLCRSMLKFINSLL 542 (648)
Q Consensus 464 ~l~L~y~v~wPL~lIlt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~-~~~~~~~~~Lr~~m~~Fv~~l~ 542 (648)
+|+|+|+||||||+||++++|.+||+|||++|.||||+++||.+|..++..|..+.. .++.++++.||+||++||+++.
T Consensus 507 ~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~ 586 (734)
T KOG2001|consen 507 AFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIE 586 (734)
T ss_pred hheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987766654 3567888999999999999999
Q ss_pred HHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006369 543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSI 618 (648)
Q Consensus 543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~-~l~~~l~~ll~~c~~F~~~~~~~~~~~~ 618 (648)
+|++.+||||+|+.|++.+++|+++|+|+..|+.||+.|++.|||+.+ .+++.+.++..+|..||+++++++ ++.
T Consensus 587 ~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~-~~~ 662 (734)
T KOG2001|consen 587 YYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLT-QSD 662 (734)
T ss_pred HHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 999999999999999999999999999999999999999999999986 899999999999999999999999 444
No 2
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=1.1e-68 Score=603.70 Aligned_cols=505 Identities=29% Similarity=0.552 Sum_probs=356.6
Q ss_pred HHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecCC-----CCHHHHHHHHHHHhHHhHHHHHHHHhhhccCC--C
Q 006369 60 DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-----MDLALQEMAKRIFPLCESFVLTGQFVESRSQF--K 132 (648)
Q Consensus 60 dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~-----~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~--~ 132 (648)
|+|++|+|++|.+|+++++ ...|.+.++ +++++++++++++++|+.|++|++|++..... .
T Consensus 1 dll~~L~G~~s~~f~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~ 68 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKD------------SDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSE 68 (542)
T ss_dssp HHHHHHTT---SSSEEETT-------------TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S
T ss_pred CHHHHccCCCCceEEEeCC------------CCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 7999999999999999881 256777665 58899999999999999999999999975443 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHh----hcCCCchhhHHHHH
Q 006369 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKA----SANNFTGSAVLNLL 207 (648)
Q Consensus 133 ~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~----~~~~~~G~~lL~~L 207 (648)
.|++.+|||++++++|.+|+..|..+|.++.. +.+||..+...++|+...++.|++++.++ ..+..+|+.+|+.|
T Consensus 69 ~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L 148 (542)
T PF04130_consen 69 RGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSIL 148 (542)
T ss_dssp -SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHH
Confidence 89999999999999999999999999999877 78999999999999999999999999987 34588999999999
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCccccccccchhhhhhhcccccc-cC
Q 006369 208 QSQA-KAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KD 285 (648)
Q Consensus 208 ~~~~-~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~~~W~~~y~i-~~ 285 (648)
|+.+ ...+|++..++++..|+.++++||++++..||.+|++.||++||||..+++. ....++.+|+++|.+ .+
T Consensus 149 ~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~-----~~~~~~~~w~~~f~l~~~ 223 (542)
T PF04130_consen 149 YERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKES-----NSESSEDFWDDRFVLRES 223 (542)
T ss_dssp HHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE---------------------EEE-GG
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccc-----cCcccchhhccCEEECcc
Confidence 9987 3368999999999999999999999999999999999999999999998321 123467899999999 67
Q ss_pred CCChhh-HHHHHHHHhhhhHHHHHHhhCCCCCCCCcccc-----------------cccccCCcccHHHHHHHHHHHHHH
Q 006369 286 GIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENS-----------------KLLSFGSNHHYLECVKVAYEFASG 347 (648)
Q Consensus 286 ~vP~Fl-~~~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~~-----------------~~~~f~~~~~~~~~I~~~~~~as~ 347 (648)
.+|.|+ .++|++|+.+||++++||.|+........... ....-.....+...|++.+..+++
T Consensus 224 ~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 303 (542)
T PF04130_consen 224 RVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNK 303 (542)
T ss_dssp GS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHH
T ss_pred cCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 899999 45999999999999999999765422111100 000111225678899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCcccCHHHHHHHHHHHHHhhhcCCCCCCCccceee
Q 006369 348 ELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSV 427 (648)
Q Consensus 348 ~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l 427 (648)
.++++++++++|.+||+++|+||||++|||+..|++.+++.+.++..+.+...++..++.+++.......+...... .
T Consensus 304 ~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 381 (542)
T PF04130_consen 304 SLLDLLFEDYNLLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLR-S- 381 (542)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEE-E-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhh-h-
Confidence 99999999999999999999999999999999999999999999888888888888888888765443222110000 0
Q ss_pred ccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006369 428 ERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGA 507 (648)
Q Consensus 428 ~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lIlt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~ 507 (648)
............ ..... ........+.+..+|+.+.|+|++||||++|||+++|.+|+.||+|||++|++++.|+++
T Consensus 382 ~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~ 458 (542)
T PF04130_consen 382 GEISSSTSLSSN--LSSND-SSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSV 458 (542)
T ss_dssp ---------------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhh--hhhhh-hhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00000 000112344568999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccc-c----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 006369 508 WQVHQGARA-F----NASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCL 582 (648)
Q Consensus 508 w~~~~~~r~-~----~~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~ 582 (648)
|...+..+. . ......+++++.+|++|.||++++++|++++||++.|.+|.++++++.|+|+|+++|++||++|+
T Consensus 459 w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~ 538 (542)
T PF04130_consen 459 WRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRIL 538 (542)
T ss_dssp HHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 998764321 1 11234678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 006369 583 RECL 586 (648)
Q Consensus 583 ~~c~ 586 (648)
++||
T Consensus 539 ~~~f 542 (542)
T PF04130_consen 539 RRCF 542 (542)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9997
No 3
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-66 Score=523.75 Aligned_cols=558 Identities=22% Similarity=0.338 Sum_probs=432.7
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecCCCCHHHHHHHHHHHhHHhHHHHHHHHhh---hcc----
Q 006369 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVE---SRS---- 129 (648)
Q Consensus 57 lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi~---~~~---- 129 (648)
|++|||.||.|++|..|.++++.+... .+-.++.-+.||.+++.++++++|..|+.+.+|.+ +..
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa--------~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~ 72 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLA--------ETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSS 72 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhccccc--------cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 689999999999999999887332111 11111223679999999999999999998888862 211
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006369 130 -----------QFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (648)
Q Consensus 130 -----------~~~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (648)
...+|.|..|||.+|...|++|+..|..+|+.+.. ...+|..++..+......+..+..++.++...+
T Consensus 73 ~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~ 152 (679)
T KOG2065|consen 73 GRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPLFPFMRNVITEIHVLN 152 (679)
T ss_pred cccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 12478999999999999999999999999998765 478899888777777777788888999998889
Q ss_pred CchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCc--cccccccchhhhh
Q 006369 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKS--LLKESLTQDYDAK 275 (648)
Q Consensus 198 ~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~--~~~~~l~~~~~~~ 275 (648)
.+||+||+.||++ ++|.|.++..+..++..|-.+++++|..||.+|.++||++||||+..+. ++..+.++...++
T Consensus 153 irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~ 229 (679)
T KOG2065|consen 153 IRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATES 229 (679)
T ss_pred cchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhh
Confidence 9999999999996 5899999999999999999999999999999999999999999995442 2111111111111
Q ss_pred hh-----------ccccccc-----CCCChhhHH-HHHHHHhhhhHHHHHHhhCCCC-------CCCCccc---cc----
Q 006369 276 YW-----------RQRYSLK-----DGIPSFLAN-IAGKILTTGKYLNVMRECGHSA-------QVPTSEN---SK---- 324 (648)
Q Consensus 276 ~W-----------~~~y~i~-----~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~-------~~p~~e~---~~---- 324 (648)
.- -+.|.+. ...|.|.+- .+.++|..|+...+.+...... +.|..|. ..
T Consensus 230 L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt~G 309 (679)
T KOG2065|consen 230 LLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLTYG 309 (679)
T ss_pred hhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccchhh
Confidence 10 0012221 246777776 8889999999888877432110 1111111 00
Q ss_pred -ccccCC-----------------cccHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHH
Q 006369 325 -LLSFGS-----------------NHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAR 386 (648)
Q Consensus 325 -~~~f~~-----------------~~~~~~~I~~~~~~as~~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~ 386 (648)
+.+-.+ ...|+..|+..++.|+.+||++..++.+|.+||+.||+|||||+|||+..|++.+.
T Consensus 310 ~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~~ 389 (679)
T KOG2065|consen 310 QLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQMV 389 (679)
T ss_pred hhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111000 13567889999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCcccCHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEE
Q 006369 387 EELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFS 466 (648)
Q Consensus 387 ~~L~~~~~~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~ 466 (648)
..|..|++....++++--++.|-..+.+..|.|-+.++..+.++.-..+... .+.+. +++ ......+..|||++.
T Consensus 390 ~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~aD~---~~~~t-Gka-~ltsdtsvdGWdAl~ 464 (679)
T KOG2065|consen 390 GTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEPADT---SDFNT-GKA-FLTSDTSVDGWDALS 464 (679)
T ss_pred HHhhCCchhhcccccchhhhhhhhhccccccccccceEEEecccCCCCccch---hhhcc-Ccc-cccCCCCccchhhhc
Confidence 9999998887777888888887766666677777777766654431111000 01110 000 112245689999999
Q ss_pred eeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---C-cchhhHHHHHHHHHHHHHHHHHHH
Q 006369 467 LSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAF---N-ASGTAISRSSLLCRSMLKFINSLL 542 (648)
Q Consensus 467 L~y~v~wPL~lIlt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~---~-~~~~~~~~~~~Lr~~m~~Fv~~l~ 542 (648)
|.|+|+|||+++|||.++.+||.|||+|+.+|++++.|+.+|...+..+.. . ..++.++ |.+|+.|.+|++|+|
T Consensus 465 L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~NlQ 542 (679)
T KOG2065|consen 465 LKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNLQ 542 (679)
T ss_pred eeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999865532111 1 1223343 899999999999999
Q ss_pred HHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 006369 543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPK 622 (648)
Q Consensus 543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~~~~~~~~~~~~~~~~ 622 (648)
||++.||||++|..++..|+...|++.+..+|+.||.+++.+|||.+.++..++.+|+.+|.+||+++..-. -++
T Consensus 543 yYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~Q~~-----~P~ 617 (679)
T KOG2065|consen 543 YYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMTQTK-----DPS 617 (679)
T ss_pred eeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccC-----CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999998876544 566
Q ss_pred CCCCCCCCchhHHHH
Q 006369 623 LEEPSDGFSGSEKFK 637 (648)
Q Consensus 623 ~~~~~~~~~~~~~~~ 637 (648)
|+..++-..+||.|-
T Consensus 618 d~~~~el~~l~e~F~ 632 (679)
T KOG2065|consen 618 DDLEDELDQLNESFG 632 (679)
T ss_pred ccchHHHHHHHHHhh
Confidence 677777777777764
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=3.8e-54 Score=479.01 Aligned_cols=520 Identities=26% Similarity=0.426 Sum_probs=439.1
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecC--CCCHHHHHHHHHHHhHHhHHHHHHHHhhhc
Q 006369 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA--SMDLALQEMAKRIFPLCESFVLTGQFVESR 128 (648)
Q Consensus 51 ~~qE~~lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~--~~~~sl~~l~~~il~l~~~~~~l~~fi~~~ 128 (648)
.+.|..+|++++|+++|+.|.++.++... ..|.+.. +++.+...++..+.++|.+|.++.+|+...
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~~------------~~~~~k~~~~~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSEL------------ECFVVKGPVHLPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccHH------------hhhhhhccccchhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 48999999999999999999999987621 2232222 255677888999999999999999999875
Q ss_pred cCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C--------CCchhHHHHhhhhhHHHHHHHHHHHHHhh
Q 006369 129 SQF---KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL---G--------RLSIQGLWFYCQPMLGSMQAVSAVIHKAS 194 (648)
Q Consensus 129 ~~~---~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~---~--------~lsL~~L~~~~~~~~~~l~~L~~i~~~~~ 194 (648)
... ..|.+.+||++++++.|++|+..|..+..++.. + .++|..++.++.....+|++++.+++.|.
T Consensus 269 ~l~~~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~ 348 (879)
T KOG2000|consen 269 VLDNPYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQ 348 (879)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhc
Confidence 432 489999999999999999999999998877632 1 24778888888888899999999999997
Q ss_pred cCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCccccccccchhhh
Q 006369 195 ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDA 274 (648)
Q Consensus 195 ~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~ 274 (648)
..+|+.++...+... .+||+.++.+...++...|.||.+|+..|++.|.+.|+|+||||.+++.... -..+
T Consensus 349 --~~~g~~l~~~~~~f~--~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~-----~~~d 419 (879)
T KOG2000|consen 349 --VPKGGKLLSAVHEFL--THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGS-----VKDD 419 (879)
T ss_pred --ccCCCcchHHHHHHH--HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCc-----cccc
Confidence 789999999998875 5999999999999999999999999999999999999999999999886321 1246
Q ss_pred hhhcccccc-cCCCChhhHH-HHHHHHhhhhHHHHHHhhCCCCCCCCccc--------c-cccccCCcccHHHHHHHHHH
Q 006369 275 KYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSEN--------S-KLLSFGSNHHYLECVKVAYE 343 (648)
Q Consensus 275 ~~W~~~y~i-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~--------~-~~~~f~~~~~~~~~I~~~~~ 343 (648)
.+|+++|.+ .+.+|.|+.. +|.||+.|||++|+++.|+.+..+-..-. . .-..++....+...|+++|.
T Consensus 420 ~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~~~~~l~~~v~~ay~ 499 (879)
T KOG2000|consen 420 RLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYASDVGLLGSVSEAYS 499 (879)
T ss_pred cccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccCCChhHHHHHhhhhc
Confidence 899999999 4899999998 99999999999999999887654321100 0 12234455678889999999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCcccCHHHHHHHHHHHHHhh-hcCCCCCCCc
Q 006369 344 FASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRST-AAAADPCHED 422 (648)
Q Consensus 344 ~as~~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~sll~~alr~s-~~~~d~~~~~ 422 (648)
...+++.+++.+.+++.+|+.++|+|.|+|+|||+...|+.+...+..|.+.+..+.|+..+|.|+|.+ +++.||-
T Consensus 500 e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~yd~~--- 576 (879)
T KOG2000|consen 500 EIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQYDDR--- 576 (879)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhccccCCh---
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 7665542
Q ss_pred cceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHH
Q 006369 423 LTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 502 (648)
Q Consensus 423 l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lIlt~~~~~~Y~~IFr~Ll~lk~~~~ 502 (648)
+++.++ |.+.. ....+..|||.++++|.|.-|+++++|++++.+|-+||+|+|++||+++
T Consensus 577 --------~vL~Rl------d~~~~------~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~ 636 (879)
T KOG2000|consen 577 --------DVLNRL------DVRVL------KLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEF 636 (879)
T ss_pred --------hhhhhh------hhHhh------hccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222332 22221 1234679999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHhhh-cc--ccC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhccCCC-HHHHH
Q 006369 503 QL-CGAWQVHQG-AR--AFN------ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS-IDEVI 571 (648)
Q Consensus 503 ~L-~~~w~~~~~-~r--~~~------~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~-ld~li 571 (648)
.| ...|+.++. .+ +.. .....+++++.+..+|.||+.++|+|+.++|||.+|..|...++++.+ +|..+
T Consensus 637 ~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~ld~~~ 716 (879)
T KOG2000|consen 637 LLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPLDFQL 716 (879)
T ss_pred HHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCchHHHH
Confidence 99 789998873 11 111 112345678899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhcCCC-hh---HHHHHHHHHHHHHHHHHHHHHHh
Q 006369 572 QHHDFFLDKCLRECLLHL-PD---LLKKVERLKSLCLQYAAATQWLI 614 (648)
Q Consensus 572 ~~H~~fL~~i~~~c~L~~-~~---l~~~l~~ll~~c~~F~~~~~~~~ 614 (648)
++|+-|++.|.-.|++.+ ++ +...+..+++.++++.+....+.
T Consensus 717 eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~~~ 763 (879)
T KOG2000|consen 717 EAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSSFY 763 (879)
T ss_pred hhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhccccccc
Confidence 999999999999999997 33 67788888888888887765554
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=237.71 Aligned_cols=550 Identities=18% Similarity=0.201 Sum_probs=365.2
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecCC-CCHHHHHHHHHHHhHHhHHHHHHHHhhhcc
Q 006369 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-MDLALQEMAKRIFPLCESFVLTGQFVESRS 129 (648)
Q Consensus 51 ~~qE~~lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~-~~~sl~~l~~~il~l~~~~~~l~~fi~~~~ 129 (648)
-++|-..+.+-+|.+.|.+.-|+..- ..|++.. +...+-|+ ..+..+..+..+.-+|.....+..|+....
T Consensus 289 lvtepprifeqlWllggtdkLFifih-----idgkcqd---rhlialphlahpcdnfaleqiaalghnafgLlafidekm 360 (1121)
T KOG4344|consen 289 LVTEPPRIFEQLWLLGGTDKLFIFIH-----IDGKCQD---RHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFIDEKM 360 (1121)
T ss_pred ccCCCCcHHHHHHHhcCCceEEEEEe-----ecceeee---eeeeeccccccchHHHHHHHHHHhhhhHHHHHhccchhc
Confidence 35677778889999999877665443 2344321 22222233 356667788999999999999999987753
Q ss_pred CCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhHHHHhhhhhHHH--HHHHH
Q 006369 130 QFK------------------NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL--GRLSIQGLWFYCQPMLGS--MQAVS 187 (648)
Q Consensus 130 ~~~------------------~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~--~~lsL~~L~~~~~~~~~~--l~~L~ 187 (648)
..+ .=..-+||.-++-+.--.|...++.++.-..+ .+++|..+.-.+.+++.. +..+.
T Consensus 361 ghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmlelrhiidlH 440 (1121)
T KOG4344|consen 361 GHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLELRHIIDLH 440 (1121)
T ss_pred cCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHH
Confidence 211 11234555555555555566777777765543 356677766666665533 22233
Q ss_pred HHHHHhh---c----CCCchhhHHHHHHHHHHHh--cCC--hHH-HHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcc
Q 006369 188 AVIHKAS---A----NNFTGSAVLNLLQSQAKAM--AGD--NTV-RSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEF 255 (648)
Q Consensus 188 ~i~~~~~---~----~~~~G~~lL~~L~~~~~~~--~Gd--~~~-~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EF 255 (648)
.+.-.-. + .......+++-+++.+..+ .|+ ++. ..++-.+......||++.++.|+.+|.++|...||
T Consensus 441 klffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaef 520 (1121)
T KOG4344|consen 441 KLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEF 520 (1121)
T ss_pred HHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHH
Confidence 2221100 0 1123457899999876432 343 322 22344566778899999999999999999999999
Q ss_pred eEeeCCccccccccchhhhhhhc---------------ccccc-------cCC--------CChhhHHHHHHHHhhhhHH
Q 006369 256 FIAEDKSLLKESLTQDYDAKYWR---------------QRYSL-------KDG--------IPSFLANIAGKILTTGKYL 305 (648)
Q Consensus 256 fI~~~~~~~~~~l~~~~~~~~W~---------------~~y~i-------~~~--------vP~Fl~~~a~~Il~~GK~l 305 (648)
.|..+.+.-- ....+|- ++|.+ ++. +-.|..+.-..|..+||..
T Consensus 521 iiarlknrlv------kHrdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFckeedaniimagkrk 594 (1121)
T KOG4344|consen 521 IIARLKNRLV------KHRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKEEDANIIMAGKRK 594 (1121)
T ss_pred HHHHHhcccc------ccchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9998765310 0112220 12221 012 3356666556788899999
Q ss_pred HHHHh--hCCCC----------C-CCC-------------------------------ccc----------------cc-
Q 006369 306 NVMRE--CGHSA----------Q-VPT-------------------------------SEN----------------SK- 324 (648)
Q Consensus 306 ~~Lr~--~~~~~----------~-~p~-------------------------------~e~----------------~~- 324 (648)
..+.. |..+. + +|- .|. .+
T Consensus 595 qllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspntLsEmlqankEiqLmklhdeaeshffalddV 674 (1121)
T KOG4344|consen 595 QLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDV 674 (1121)
T ss_pred HhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhc
Confidence 99883 43221 1 110 000 00
Q ss_pred -----ccccCC--------------------------c---------ccHHHHHHHH--HHHHHHHHHHHHHhhcCHHHH
Q 006369 325 -----LLSFGS--------------------------N---------HHYLECVKVA--YEFASGELLNLIKERYDLMGK 362 (648)
Q Consensus 325 -----~~~f~~--------------------------~---------~~~~~~I~~~--~~~as~~ll~ll~~~~~L~~~ 362 (648)
.+.|.+ + .-+...|+++ |-..+..|+.-+.+++.+.+.
T Consensus 675 hcgadaidfadepeedkDfedkfacgdvcvdrsqeirncelFaiflqpclephidkQrerLdccgnLManikKdlelsec 754 (1121)
T KOG4344|consen 675 HCGADAIDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQRERLDCCGNLMANIKKDLELSEC 754 (1121)
T ss_pred cCcccccchhhCCCccccHHHhhccccccccccccceehhhHHHHhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 000100 0 1234568888 556788999999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHcccCcccCHHHHHHHHHHHHHhhhcCCC--CCCCccceeeccccHHH-HHHhh
Q 006369 363 LRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAAD--PCHEDLTCSVERSSLLK-RMATL 439 (648)
Q Consensus 363 L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~sll~~alr~s~~~~d--~~~~~l~~~l~~~~l~~-~l~~~ 439 (648)
|++.+.||++..||.+..|.-..+..+...-.+-+...++..|+.|.--. ..+. ++...+.+.++..+-.. .|.++
T Consensus 755 LQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamgle-krYlfvedsnaLfirfEnvdnakkaLgsv 833 (1121)
T KOG4344|consen 755 LQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLE-KRYLFVEDSNALFIRFENVDNAKKALGSV 833 (1121)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhh-hcccccccccceeEEeecccchhhhcchh
Confidence 99999999999999999999888887766555666666666677665321 0111 33344555554211100 11100
Q ss_pred hc-----------------cccccCCCCCCCCCCCCCceeeEEEeeee--cCCcceeeechHHHHHHHHHHHHHHHHHHH
Q 006369 440 KG-----------------VEIKTSSDSVDLEQPVSITGLETFSLSYK--VQWPLSIVISRKALTKYQMVFRLLFHCKHV 500 (648)
Q Consensus 440 ~~-----------------l~~~~~~~~~~~~~~~~~~~~d~l~L~y~--v~wPL~lIlt~~~~~~Y~~IFr~Ll~lk~~ 500 (648)
.. +-++..+.- ....-....++|++.|+|+ ++||..+|||+.+|..||.+|+.|+++|++
T Consensus 834 ltsklcavllphypqlahylhvklisqi-nsnsikvveaLdaieLdferpmamhqdiiislacmkdYNqVflLlLkiKWA 912 (1121)
T KOG4344|consen 834 LTSKLCAVLLPHYPQLAHYLHVKLISQI-NSNSIKVVEALDAIELDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKWA 912 (1121)
T ss_pred hhhhhhhhhcccchhhhhHHHHHHHhhh-cccchhhhhhhhheeecccCCcccchheEecHHHHHHHHHHHHHHHHHHHH
Confidence 00 000100000 0011223578999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHH-h--hh----cc---------------ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 006369 501 ERQLCGAWQV-H--QG----AR---------------AFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMH 558 (648)
Q Consensus 501 ~~~L~~~w~~-~--~~----~r---------------~~~~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~ 558 (648)
.|.|.++-.. . +. .| +....+..++|...+|.+++|||+||+.|+|..|+++...+|+
T Consensus 913 kwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleilRfkLiffiNnLHahIMeailhStgleFe 992 (1121)
T KOG4344|consen 913 KWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFE 992 (1121)
T ss_pred HHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 9999985432 1 10 11 0112356789999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006369 559 NRLQTAKSIDEVIQHHDFFLDKCLRECLLHL--PDLLKKVERLKSLCLQYAAATQWLISS 616 (648)
Q Consensus 559 ~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~--~~l~~~l~~ll~~c~~F~~~~~~~~~~ 616 (648)
.++.+|+|+|+++..|.+||..+...|+|++ +.+..+|.+++.++..|+.-|+...|+
T Consensus 993 hqieEaKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLalmfadeWqtcasc 1052 (1121)
T KOG4344|consen 993 HQIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLALMFADEWQTCASC 1052 (1121)
T ss_pred HHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 9999999999999999999999999999997 467889999999999999999988754
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=47.12 E-value=2.3e+02 Score=30.99 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecC---CCCHH-HHHHHHHHHhHHhHHHHHHHHh
Q 006369 50 AGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLA-LQEMAKRIFPLCESFVLTGQFV 125 (648)
Q Consensus 50 ~~~qE~~lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~s-l~~l~~~il~l~~~~~~l~~fi 125 (648)
..+.|+-+++|.+++|+|++|-+|..-+ ..|...| +++.+ ++.++..+...|.-+..+++-.
T Consensus 178 ~riseqs~~~e~IymL~Gy~~~~f~~ve--------------~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva 243 (653)
T PF14609_consen 178 YRISEQSWKYEIIYMLMGYQGHIFTCVE--------------EILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVA 243 (653)
T ss_pred eeecccchHHHHHHHHhcCcchhhhhhH--------------hhhcccccccchHHHHHHHHHHHhhccccchHHHHHHh
Confidence 3688999999999999999999996544 1222223 23333 3456777777777777777655
Q ss_pred hhc
Q 006369 126 ESR 128 (648)
Q Consensus 126 ~~~ 128 (648)
.++
T Consensus 244 ~~~ 246 (653)
T PF14609_consen 244 NER 246 (653)
T ss_pred CCc
Confidence 443
No 7
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=31.52 E-value=57 Score=25.73 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=37.8
Q ss_pred hhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 006369 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKV 596 (648)
Q Consensus 546 ~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l 596 (648)
...||...|.++.+.+++-.+-.++++.-. .=..|.++.||+..++.+.+
T Consensus 10 CGkvig~~we~y~~~~~~g~~~~~~LD~LG-~~RYCCRRMllsHvdlid~l 59 (71)
T PLN00032 10 CGKVIGNKWDTYLDLLQADYSEGDALDALG-LVRYCCRRMLMTHVDLIEKL 59 (71)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHhC-chhhhhhhHHHHHHHHHHHH
Confidence 457899999999999988788877766543 34567888888877665443
No 8
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=24.48 E-value=2.2e+02 Score=22.96 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=30.7
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q 006369 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYA 607 (648)
Q Consensus 560 ~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~ 607 (648)
.+++.-+.+||++.|.+++..+...+ ..++...+.=|+.+..-|.
T Consensus 30 ~i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 30 LIEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHcC
Confidence 34566789999999999999887666 5567777776766665553
No 9
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=22.52 E-value=65 Score=24.74 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=35.5
Q ss_pred hhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 006369 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKV 596 (648)
Q Consensus 546 ~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l 596 (648)
...||...|.++...+++-.+..++++.-. .=..|.+..+|+..++.+.+
T Consensus 10 CGkvi~~~we~y~~~~~~g~~~~~vLd~Lg-~~RyCCRRMllthvdlid~l 59 (62)
T PRK04016 10 CGKVIAEKWEEFKERVEAGEDPGKVLDDLG-VKRYCCRRMLLSHVELIDEV 59 (62)
T ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHHHcC-CcchhhhhHHHHHHHHHHHH
Confidence 356889999999999988788877666332 33457777788776665443
No 10
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.85 E-value=93 Score=35.03 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCch--hHHHHhhhhhHHHHHHHHHHHHHhhcCCCch------hhHH
Q 006369 135 LVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSI--QGLWFYCQPMLGSMQAVSAVIHKASANNFTG------SAVL 204 (648)
Q Consensus 135 ~v~~Al~~al~~~L~~y~~~v~~lE~~~~~~--~lsL--~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~G------~~lL 204 (648)
+.-.-|+-+.+.+|+.....|...|.....+ .-++ -.+| ++.....|+.+.+++.... --+| ..++
T Consensus 451 ppdeffavgardLlnpickaiiaYddrgeadeakntlilFsie--feehfpqLqlldElaedgh--LddGaaefiiarlk 526 (1121)
T KOG4344|consen 451 PPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIE--FEEHFPQLQLLDELAEDGH--LDDGAAEFIIARLK 526 (1121)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEe--hhhhhHHHHHHHHHHHhcc--ccccHHHHHHHHHh
Confidence 4456788899999999988888888765442 1122 2334 3444556666666665432 1233 3455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCC
Q 006369 205 NLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDK 261 (648)
Q Consensus 205 ~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~ 261 (648)
|.+++... .-....+.+.........+-|+..++.|.......|...||+|+-..
T Consensus 527 nrlvkHrd--fqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFck 581 (1121)
T KOG4344|consen 527 NRLVKHRD--FQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCK 581 (1121)
T ss_pred ccccccch--hhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHH
Confidence 55555321 11133556677777778899999999999998899999999987544
No 11
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=21.63 E-value=5e+02 Score=21.93 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=43.7
Q ss_pred HHHHHHHHhH----HhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCchhHHHHhhh
Q 006369 105 QEMAKRIFPL----CESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR--LGRLSIQGLWFYCQ 177 (648)
Q Consensus 105 ~~l~~~il~l----~~~~~~l~~fi~~~~~~~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~--~~~lsL~~L~~~~~ 177 (648)
++++++|+.+ +..|.++.+=...+-......-.+++|..|....++.-.-|..+|..+. .+...+..+...+|
T Consensus 2 ~~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ 80 (97)
T PF14966_consen 2 RELLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQ 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 3566666655 4556555543333222223355677788888888888888888988876 34455555554444
No 12
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.35 E-value=4.8e+02 Score=25.27 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006369 149 LDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMT 228 (648)
Q Consensus 149 ~~y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll 228 (648)
-+|..-+.+||.|+.++...+.++...+..+..++.+-+--+..+. ++.+|- +++|-.....+...++
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~---------~S~iy~---~~~~y~~~~~It~~ll 78 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLA---------LSYIYW---EYHGYRPYLVITALLL 78 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHHHh---hccccchhHHHHHHHH
Confidence 4577788888888766655555555544444444433221111111 255554 3678776666666666
Q ss_pred HHHhHHHHHHHHHHHhc
Q 006369 229 QCASNAYLGILERWVYE 245 (648)
Q Consensus 229 ~~~~~py~~~l~~Wl~~ 245 (648)
-..+--.++..-.|+++
T Consensus 79 gs~slymfrwal~~lye 95 (251)
T COG5415 79 GSGSLYMFRWALTKLYE 95 (251)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 64444455666667764
No 13
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=20.49 E-value=7.8e+02 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.0
Q ss_pred HHHHHHHhHHhHHHHHHHHhhhcc
Q 006369 106 EMAKRIFPLCESFVLTGQFVESRS 129 (648)
Q Consensus 106 ~l~~~il~l~~~~~~l~~fi~~~~ 129 (648)
.+.+-+..+|.+|..|..++....
T Consensus 13 ~La~~l~~l~~~Y~~v~s~~~~~~ 36 (229)
T PF10334_consen 13 TLASTLSELGDLYSLVVSFWSRRL 36 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466778899999999999988754
No 14
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=20.39 E-value=4.4e+02 Score=23.38 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhHHhHHHHHHHHhhhccCC---CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 006369 101 DLALQEMAKRIFPLCESFVLTGQFVESRSQF---KNGLVNHAF---AASLRALLLDYEAMVAQLEHQFR 163 (648)
Q Consensus 101 ~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~---~~g~v~~Al---~~al~~~L~~y~~~v~~lE~~~~ 163 (648)
+.|...+-++|+.+..-| |+...|+.... ++|..+.+. -.++.-+|.+..+.+..||.++.
T Consensus 37 ~~ss~~LR~QILdLSkrY--VKaLAeEn~~~~dgp~~~smagYaDLKktiAVLLddiLqRl~kLE~kvd 103 (138)
T PF15027_consen 37 HQSSAELREQILDLSKRY--VKALAEENKNVVDGPYGASMAGYADLKKTIAVLLDDILQRLVKLESKVD 103 (138)
T ss_pred ccChHHHHHHHHHHHHHH--HHHHHHHcCCCCCCCcchhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344457778889887655 34455554332 345555444 33466678888888899988763
No 15
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=20.38 E-value=1.3e+02 Score=23.36 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 006369 565 KSIDEVIQHHDFFLDKCLRECLLHLPDLL 593 (648)
Q Consensus 565 ~~ld~li~~H~~fL~~i~~~c~L~~~~l~ 593 (648)
..+.++++.|.+|-.+| |+++.|+++
T Consensus 32 ~~l~~lve~RsdFAS~C---C~~NsPPlY 57 (68)
T PF09164_consen 32 TELKELVEKRSDFASKC---CSINSPPLY 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHH---SSTT--HHH
T ss_pred HHHHHHHHHHhhHHHHh---hccCCCchh
Confidence 46899999999999886 888888764
Done!