Query 006369
Match_columns 648
No_of_seqs 257 out of 856
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 23:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 1.4E-86 4.9E-91 761.6 51.7 537 57-613 1-599 (677)
2 2jxc_B Stonin-2, stoned B; end 78.0 3 0.0001 27.5 3.9 37 3-54 6-42 (45)
3 3t98_B Nucleoporin NUP58/NUP45 34.5 1.8E+02 0.006 23.3 8.5 54 134-187 7-64 (93)
4 3obv_E Protein diaphanous homo 17.5 6.3E+02 0.022 26.4 10.7 90 102-191 202-305 (457)
5 4e17_B Catenin alpha-1; four h 17.1 1.1E+02 0.0037 20.3 2.8 16 137-152 21-36 (40)
6 1w53_A Phosphoserine phosphata 15.3 2.8E+02 0.0094 21.7 5.3 48 556-607 32-81 (84)
7 2j6y_A Phosphoserine phosphata 14.0 5.1E+02 0.017 21.3 6.8 50 560-613 37-87 (111)
8 1n6j_G Calcineurin-binding pro 12.1 1.3E+02 0.0046 18.5 2.0 21 627-647 4-25 (35)
9 4a64_A Cullin-4B, CUL4B, CUL-4 12.0 6.9E+02 0.024 24.8 8.9 72 523-600 269-345 (354)
10 2rpa_A Katanin P60 ATPase-cont 9.7 4.3E+02 0.015 20.2 4.8 40 357-396 10-49 (78)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-86 Score=761.65 Aligned_cols=537 Identities=22% Similarity=0.364 Sum_probs=443.9
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecC---CCCHHHHHHHHHHHhHHhHHHHHHHHhhhccCC--
Q 006369 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF-- 131 (648)
Q Consensus 57 lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~-- 131 (648)
||+|||+||+|++|.||++.+ ..+|+|++ .+++|+++++++++++|.+|++|++|++.....
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 689999999999999999876 14799998 567999999999999999999999999974321
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006369 132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (648)
Q Consensus 132 -------------~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (648)
.+|+|.+|||++|+++|++|+..|+++|+++.. +.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 169999999999999999999999999999854 679999999999999999999999999887667
Q ss_pred CchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccc--------
Q 006369 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT-------- 269 (648)
Q Consensus 198 ~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~-------- 269 (648)
++||++|+.||+.+ .+||+.+++++.+|+.+|++||++||..||++|+|.|||+||||.+++...+..+.
T Consensus 148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 99999999999987 49999999999999999999999999999999999999999999988654321100
Q ss_pred -------------------ch-hhhhhhcccccc-cCCCChhhHH-HHHHHHhhhhHHHHHHhhCCCCCC-----CCccc
Q 006369 270 -------------------QD-YDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQV-----PTSEN 322 (648)
Q Consensus 270 -------------------~~-~~~~~W~~~y~i-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~-----p~~e~ 322 (648)
.+ ....+|..+|+| .+++|.|+++ +|+|||.|||++|+||+|+..... +..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 00 012479999999 6789999986 999999999999999998754210 00000
Q ss_pred ------ccccccC--CcccHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCc
Q 006369 323 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 394 (648)
Q Consensus 323 ------~~~~~f~--~~~~~~~~I~~~~~~as~~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~ 394 (648)
..+.+.. +...+...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.+|..
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0011110 12467889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCc
Q 006369 395 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 474 (648)
Q Consensus 395 ~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wP 474 (648)
+++..+|+..|+.|++.+....+++.+.+.+.+........ ....+.+ .. .........+..|||.|+|+|+||||
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~d~l~L~Y~v~~P 461 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQARE--GP-SRETSPREAPASGWAALGLSYKVQWP 461 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-ccccccc--cc-ccccccccCCccchheEEEEEeCCCh
Confidence 99999999999999998766666676777776654332100 0000000 00 00011223457899999999999999
Q ss_pred ceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 006369 475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 554 (648)
Q Consensus 475 L~lIlt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w 554 (648)
|++|||+++|.+|+.||+|||++||+++.|+++|..++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus 462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w 540 (677)
T 3rip_A 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF 540 (677)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765543322233444 899999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006369 555 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWL 613 (648)
Q Consensus 555 ~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~~~~~~~ 613 (648)
.+|++++++++|+|+++++|++||++|+++|||+.+++.+++.+|+++|.+||.++++.
T Consensus 541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~ 599 (677)
T 3rip_A 541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQN 599 (677)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999863
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=78.01 E-value=3 Score=27.55 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=27.1
Q ss_pred CCCCCCCCCcccCCCccCccccchhhhhhhccccccCcccccCCCCCccchH
Q 006369 3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQE 54 (648)
Q Consensus 3 ~~~p~~p~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qE 54 (648)
.++|..|+|...-|||..++- .-.+.|+.+++.-..|
T Consensus 6 p~~~e~~Pw~atNPFLde~l~---------------dvqPSPINPFsafFeE 42 (45)
T 2jxc_B 6 PSVTEASPWRATNPFLNETLQ---------------DVQPSPINPFSAFFEE 42 (45)
T ss_dssp CCCSCCCCSCSSCSSSSTTTS---------------CCCCCTTCSCTTHHHH
T ss_pred CccccCCCcccCCcchhhhHH---------------hCCCCCCChHHHhhhh
Confidence 467888999999999998882 2234577777765544
No 3
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.53 E-value=1.8e+02 Score=23.30 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCchhHHHHhhhhhHHHHHHHH
Q 006369 134 GLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVS 187 (648)
Q Consensus 134 g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~----~~lsL~~L~~~~~~~~~~l~~L~ 187 (648)
..+.+-++.-.++.|..|+..|.++|+.+.. ...|.+.|-.-++.....+-.||
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLA 64 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALA 64 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999988744 35666666555554444444443
No 4
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=17.55 E-value=6.3e+02 Score=26.35 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHHhHHHH--------------HHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 006369 102 LALQEMAKRIFPLCESFVL--------------TGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRL 167 (648)
Q Consensus 102 ~sl~~l~~~il~l~~~~~~--------------l~~fi~~~~~~~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~~~l 167 (648)
..++.++.-+|.+|++... |.+..+..+.......+|-++..+++.--+...+...|.+--....+
T Consensus 202 ~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 202 ENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRV 281 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccC
Confidence 4456667777777765331 22222222222233456666666554333333333333222223577
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHH
Q 006369 168 SIQGLWFYCQPMLGSMQAVSAVIH 191 (648)
Q Consensus 168 sL~~L~~~~~~~~~~l~~L~~i~~ 191 (648)
++..|...+......+..+..-+.
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777666665555555544443
No 5
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=17.07 E-value=1.1e+02 Score=20.31 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006369 137 NHAFAASLRALLLDYE 152 (648)
Q Consensus 137 ~~Al~~al~~~L~~y~ 152 (648)
++|+..|++.+|.+|.
T Consensus 21 CnavrqALQdLlseY~ 36 (40)
T 4e17_B 21 CNAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4677777777888775
No 6
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=15.28 E-value=2.8e+02 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Q 006369 556 VMHNR-LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 607 (648)
Q Consensus 556 ~l~~~-l~~a~~ld~li~~H~~fL~~i~~~c~L~-~~~l~~~l~~ll~~c~~F~ 607 (648)
+|-+. +++.-..+|+++.|.+++..+. ++ ..++...++=|+.+..-|.
T Consensus 32 ~fs~~~iek~i~PEeiV~iHk~~i~el~----~~l~e~v~~Sfd~L~Evm~gyG 81 (84)
T 1w53_A 32 KFSRKTIEHQIPPEEIISIHRKVLKELY----PSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHcCCCHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHhC
Confidence 34333 4567889999999998877654 44 6677777777777766554
No 7
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=14.02 E-value=5.1e+02 Score=21.33 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=37.5
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 006369 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAATQWL 613 (648)
Q Consensus 560 ~l~~a~~ld~li~~H~~fL~~i~~~c~L~-~~~l~~~l~~ll~~c~~F~~~~~~~ 613 (648)
.+++.-..++++..|..++..+ ..+ ...+...++=|+.+..-|.-.-+..
T Consensus 37 liek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlayre~ 87 (111)
T 2j6y_A 37 TIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAYQEH 87 (111)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 3456778999999999999887 555 5678888888888888877654433
No 8
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=12.11 E-value=1.3e+02 Score=18.51 Aligned_cols=21 Identities=48% Similarity=0.221 Sum_probs=14.5
Q ss_pred CCCCchhHHHHH-HHhhhhhcc
Q 006369 627 SDGFSGSEKFKR-LKLRSLSQQ 647 (648)
Q Consensus 627 ~~~~~~~~~~~~-~~~~~~~~~ 647 (648)
+.+.+|+|+-|+ |+..-|++|
T Consensus 4 sp~gsiseetkqklk~~ils~q 25 (35)
T 1n6j_G 4 SPKGSISEETKQKLKSAILSAQ 25 (35)
T ss_dssp CCSSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHHHHhhH
Confidence 345678888876 566667766
No 9
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=12.01 E-value=6.9e+02 Score=24.82 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=44.5
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 006369 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVE 597 (648)
Q Consensus 523 ~~~~~~~Lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l-~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~ 597 (648)
.+++++.|..+ +-.+.+.+..|+.....+ ..... +...=|+++++.|+.| +.+.+.||-.++.+..++.
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~-----iv~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGST-----IVINPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH-----HHHSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHH-----HHcCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 34455544432 345666667776553211 11111 2234589999999965 5667789999998888887
Q ss_pred HHH
Q 006369 598 RLK 600 (648)
Q Consensus 598 ~ll 600 (648)
+-+
T Consensus 343 ~af 345 (354)
T 4a64_A 343 EAF 345 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 10
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=9.70 E-value=4.3e+02 Score=20.23 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCccc
Q 006369 357 YDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEI 396 (648)
Q Consensus 357 ~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~~ 396 (648)
..+.++++.-|.|-|+|+.|-...|++.+...+.+-...+
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999888777644433
Done!