Query 006369
Match_columns 648
No_of_seqs 257 out of 856
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 23:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyja2 a.121.1.1 (A:83-200) P 25.7 1.2E+02 0.0085 22.8 8.0 49 198-249 24-72 (118)
2 d1kxpd3 a.126.1.1 (D:405-473) 23.7 31 0.0023 23.8 3.1 26 565-593 32-57 (69)
3 d1rkta2 a.121.1.1 (A:83-205) H 23.3 1.5E+02 0.011 22.7 8.7 65 182-249 6-70 (123)
4 d1ldja2 a.118.17.1 (A:17-410) 16.4 1.5E+02 0.011 27.8 7.9 75 523-603 302-386 (394)
5 d1pb6a2 a.121.1.1 (A:86-211) H 16.2 1E+02 0.0076 23.6 5.6 35 215-249 35-69 (126)
6 d2id3a2 a.121.1.1 (A:81-203) P 11.6 2.7E+02 0.02 20.9 6.9 50 197-249 23-72 (123)
7 d1w53a_ a.186.1.2 (A:) Phospho 11.1 2.3E+02 0.017 20.3 5.6 44 560-607 37-81 (84)
8 d2i10a2 a.121.1.1 (A:79-194) P 8.8 79 0.0057 23.8 2.4 52 196-250 22-73 (116)
9 d1n1fa_ a.26.1.3 (A:) Interleu 6.7 1.9E+02 0.013 23.4 3.9 36 576-614 63-98 (156)
10 d2hyec2 a.118.17.1 (C:55-401) 6.2 4E+02 0.029 23.8 6.7 37 566-603 307-343 (347)
No 1
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=25.73 E-value=1.2e+02 Score=22.81 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=40.7
Q ss_pred CchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 006369 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (648)
Q Consensus 198 ~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (648)
..||-+.+..-+. ...|+.+++.+...+.....-+.+.|..-...|++.
T Consensus 24 ~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 24 PGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3478888777664 367889999999999999999999999999999874
No 2
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.72 E-value=31 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 006369 565 KSIDEVIQHHDFFLDKCLRECLLHLPDLL 593 (648)
Q Consensus 565 ~~ld~li~~H~~fL~~i~~~c~L~~~~l~ 593 (648)
..+.++++.|.+|-.+| |.+++|+++
T Consensus 32 ~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 32 KELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred HHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 46899999999998876 788888764
No 3
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=23.28 E-value=1.5e+02 Score=22.65 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 006369 182 SMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (648)
Q Consensus 182 ~l~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (648)
.+.++..++..+. ..+-.+--+.++......-||.++..+...+..-..-+...|...+..|.+.
T Consensus 6 ~~~~~d~~~~~l~---~~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 6 ISSYLDELTEGLR---DVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHTT---TGGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHH---hcCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3445555665553 2222233444454444567999999999999999999999999999999874
No 4
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.42 E-value=1.5e+02 Score=27.83 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=46.6
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHHHhccCC------CHHHHHHHHHHHHHHHHHHhcCCChhH
Q 006369 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAK------SIDEVIQHHDFFLDKCLRECLLHLPDL 592 (648)
Q Consensus 523 ~~~~~~~Lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~------~ld~li~~H~~fL~~i~~~c~L~~~~l 592 (648)
.+++++.|..+ +-.+.+.+..|+.... ........+.. =|++++..|+. .+.+.+.||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G-----~~~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQG-----LAAIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-----HHHHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHH-----HHHHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 45555554433 3555666777765543 22222222211 16889999985 577888999999998
Q ss_pred HHHHHHHHHHH
Q 006369 593 LKKVERLKSLC 603 (648)
Q Consensus 593 ~~~l~~ll~~c 603 (648)
..++.+-+.-+
T Consensus 376 ~~~l~~af~~f 386 (394)
T d1ldja2 376 VAALDKACGRF 386 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888775543
No 5
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=16.19 E-value=1e+02 Score=23.58 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.7
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 006369 215 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (648)
Q Consensus 215 ~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (648)
+|.+...+.+...+........+.|++|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 45555566666777777788888999999999874
No 6
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.58 E-value=2.7e+02 Score=20.88 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.9
Q ss_pred CCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 006369 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (648)
Q Consensus 197 ~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~ 249 (648)
...|+.++-.+-..+ ..|+.....+..++...-.-+-.++++.+..|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666666554432 45677888888888888888889999999999984
No 7
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.08 E-value=2.3e+02 Score=20.27 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=32.9
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Q 006369 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 607 (648)
Q Consensus 560 ~l~~a~~ld~li~~H~~fL~~i~~~c~L~-~~~l~~~l~~ll~~c~~F~ 607 (648)
.|++--+.+||++.|.+++..+ .++ .+++...++=|+.+..-|.
T Consensus 37 ~iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 37 TIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 4566789999999999888765 344 4677888887877776653
No 8
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=8.83 E-value=79 Score=23.85 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=41.6
Q ss_pred CCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecC
Q 006369 196 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250 (648)
Q Consensus 196 ~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~D 250 (648)
...+||-+.+...+. ...|+.+++.+...+.....-+...|.+-...|++.+
T Consensus 22 ~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 22 GQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp ----CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456788888777653 3578999999999999999999999999999999864
No 9
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.74 E-value=1.9e+02 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 006369 576 FFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLI 614 (648)
Q Consensus 576 ~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~~~~~~~~ 614 (648)
-||++++....-.++.+.+.+..| +-.|..+.+++.
T Consensus 63 FYLe~Vfp~~~~~~~~i~~~v~sL---an~f~~L~~~L~ 98 (156)
T d1n1fa_ 63 FYVDRVFKDHQEPNPKILRKISSI---ANSFLYMQKTLR 98 (156)
T ss_dssp HHHHTHHHHCCCCCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHhHhhhcccchhhhHHHHH---HHHHHHHHHHHH
Confidence 566666666554455555444444 444444444433
No 10
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.18 E-value=4e+02 Score=23.84 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006369 566 SIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 603 (648)
Q Consensus 566 ~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c 603 (648)
=+++++..|+.| +.+...||-.++.+.+++.+-+.-.
T Consensus 307 ~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 307 MVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 388899999865 5677899999999988888775543
Done!