Query 006370
Match_columns 648
No_of_seqs 537 out of 3794
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 22:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 7.7E-47 1.7E-51 377.3 34.1 262 148-420 81-343 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-41 2.2E-46 369.9 36.9 248 149-408 57-307 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.6E-42 9.9E-47 364.9 30.3 255 149-408 2-349 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 9.2E-38 2E-42 351.3 35.6 252 151-408 89-364 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-37 4.6E-42 348.3 28.4 245 152-405 2-258 (562)
6 KOG0145 RNA-binding protein EL 100.0 8.6E-37 1.9E-41 284.7 21.9 254 149-407 40-357 (360)
7 KOG0127 Nucleolar protein fibr 100.0 1.5E-35 3.2E-40 302.6 23.0 251 150-408 5-378 (678)
8 TIGR01622 SF-CC1 splicing fact 100.0 3E-34 6.5E-39 315.5 29.1 248 147-406 86-446 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.9E-34 1.5E-38 312.0 29.1 240 149-408 1-351 (481)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-33 4E-38 313.6 28.6 245 147-405 172-499 (509)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.8E-33 6E-38 307.2 27.7 239 150-406 96-478 (481)
12 KOG0144 RNA-binding protein CU 100.0 6.4E-34 1.4E-38 283.4 19.7 259 149-412 33-508 (510)
13 KOG0148 Apoptosis-promoting RN 100.0 2E-32 4.3E-37 257.7 22.9 227 148-411 4-241 (321)
14 KOG0127 Nucleolar protein fibr 100.0 1.1E-34 2.4E-39 296.1 7.6 200 146-399 288-566 (678)
15 TIGR01645 half-pint poly-U bin 100.0 6.5E-32 1.4E-36 293.6 29.3 163 145-314 102-281 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 2.7E-30 5.9E-35 268.2 26.3 169 227-407 104-272 (346)
17 KOG0123 Polyadenylate-binding 100.0 3E-30 6.6E-35 268.9 18.9 242 153-406 79-347 (369)
18 KOG0123 Polyadenylate-binding 100.0 7.4E-29 1.6E-33 258.6 21.2 238 151-405 2-243 (369)
19 TIGR01659 sex-lethal sex-letha 100.0 3.6E-28 7.7E-33 252.3 19.7 166 147-317 104-275 (346)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.5E-26 9.8E-31 242.2 18.1 161 151-318 90-350 (352)
21 TIGR01645 half-pint poly-U bin 99.9 1.5E-25 3.3E-30 244.0 20.7 171 230-407 107-283 (612)
22 KOG0110 RNA-binding protein (R 99.9 8.2E-26 1.8E-30 239.3 17.8 248 149-408 384-693 (725)
23 KOG0124 Polypyrimidine tract-b 99.9 4E-25 8.8E-30 215.7 19.2 254 144-404 107-531 (544)
24 KOG4212 RNA-binding protein hn 99.9 1.2E-24 2.5E-29 217.1 21.0 145 149-298 43-279 (608)
25 KOG0147 Transcriptional coacti 99.9 2.2E-25 4.7E-30 230.3 13.0 247 147-406 176-526 (549)
26 KOG0148 Apoptosis-promoting RN 99.9 4E-24 8.7E-29 201.8 13.9 154 150-316 62-237 (321)
27 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-23 5.6E-28 228.8 21.3 173 227-407 86-265 (457)
28 KOG0117 Heterogeneous nuclear 99.9 2.1E-21 4.5E-26 195.4 31.7 162 228-406 81-246 (506)
29 TIGR01648 hnRNP-R-Q heterogene 99.9 5.9E-22 1.3E-26 216.0 30.1 189 201-407 18-221 (578)
30 KOG4211 Splicing factor hnRNP- 99.9 1.2E-21 2.6E-26 200.1 25.6 242 147-404 7-354 (510)
31 KOG0144 RNA-binding protein CU 99.9 2.1E-23 4.6E-28 208.5 12.1 162 229-399 33-195 (510)
32 KOG0110 RNA-binding protein (R 99.9 9.3E-22 2E-26 208.7 17.3 226 145-406 222-596 (725)
33 KOG0145 RNA-binding protein EL 99.9 4.7E-22 1E-26 186.3 12.9 166 227-404 38-203 (360)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.8E-21 8.3E-26 214.6 19.7 171 225-407 170-374 (509)
35 KOG0109 RNA-binding protein LA 99.9 8.2E-22 1.8E-26 188.0 10.5 157 151-330 3-163 (346)
36 KOG0131 Splicing factor 3b, su 99.9 1.1E-21 2.4E-26 175.3 9.6 164 149-318 8-178 (203)
37 KOG0109 RNA-binding protein LA 99.8 4.1E-21 9E-26 183.2 11.9 148 231-408 3-150 (346)
38 KOG0131 Splicing factor 3b, su 99.8 8.2E-21 1.8E-25 169.7 11.9 170 228-408 7-177 (203)
39 KOG0146 RNA-binding protein ET 99.8 8.1E-21 1.8E-25 178.7 12.0 183 220-407 3-364 (371)
40 KOG4205 RNA-binding protein mu 99.8 1E-19 2.3E-24 183.1 10.2 196 149-353 5-212 (311)
41 KOG4205 RNA-binding protein mu 99.8 2.6E-18 5.7E-23 173.1 19.8 172 229-409 5-177 (311)
42 KOG0124 Polypyrimidine tract-b 99.8 4.2E-19 9.1E-24 173.8 11.1 171 231-408 114-290 (544)
43 KOG1190 Polypyrimidine tract-b 99.7 4.2E-17 9E-22 162.6 17.6 246 148-414 26-379 (492)
44 PLN03134 glycine-rich RNA-bind 99.7 4.1E-17 8.9E-22 148.6 14.9 83 325-407 31-113 (144)
45 KOG0147 Transcriptional coacti 99.7 4.2E-18 9.2E-23 176.6 8.6 175 226-408 175-358 (549)
46 KOG0120 Splicing factor U2AF, 99.7 3.4E-16 7.4E-21 165.1 16.3 244 147-404 172-488 (500)
47 KOG0105 Alternative splicing f 99.7 9.4E-16 2E-20 137.3 16.5 164 228-408 4-188 (241)
48 KOG0146 RNA-binding protein ET 99.7 1.6E-16 3.4E-21 150.0 9.7 163 149-319 18-367 (371)
49 KOG1456 Heterogeneous nuclear 99.6 1.4E-14 3.1E-19 142.9 20.7 243 144-407 25-362 (494)
50 KOG4211 Splicing factor hnRNP- 99.6 1.7E-14 3.7E-19 148.1 22.1 161 231-404 11-178 (510)
51 KOG1365 RNA-binding protein Fu 99.6 1E-15 2.2E-20 151.3 12.2 252 144-404 54-358 (508)
52 KOG4206 Spliceosomal protein s 99.6 1.3E-14 2.8E-19 135.8 15.7 207 148-404 7-218 (221)
53 KOG1190 Polypyrimidine tract-b 99.6 4.6E-14 1E-18 141.1 19.5 236 151-406 151-489 (492)
54 KOG0105 Alternative splicing f 99.6 6.1E-15 1.3E-19 132.1 11.8 140 148-300 4-175 (241)
55 PLN03134 glycine-rich RNA-bind 99.6 2.8E-15 6E-20 136.6 9.6 81 149-229 33-113 (144)
56 KOG1548 Transcription elongati 99.6 2.5E-14 5.4E-19 140.5 15.1 198 149-405 133-349 (382)
57 KOG0106 Alternative splicing f 99.5 3E-14 6.5E-19 134.9 6.3 149 231-402 2-165 (216)
58 KOG0107 Alternative splicing f 99.5 1.8E-12 3.9E-17 115.9 16.1 74 328-406 10-83 (195)
59 PF00076 RRM_1: RNA recognitio 99.5 2.2E-13 4.8E-18 108.4 8.9 70 331-401 1-70 (70)
60 KOG0149 Predicted RNA-binding 99.5 1.3E-13 2.8E-18 129.2 8.3 87 327-414 11-97 (247)
61 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.3E-18 109.3 7.4 70 153-223 1-70 (70)
62 KOG4207 Predicted splicing fac 99.5 2.1E-13 4.6E-18 124.6 8.8 81 327-407 12-92 (256)
63 KOG1457 RNA binding protein (c 99.4 1.5E-12 3.1E-17 120.5 12.8 162 229-397 33-275 (284)
64 KOG0113 U1 small nuclear ribon 99.4 1.8E-12 3.9E-17 125.1 12.8 82 326-407 99-180 (335)
65 KOG0149 Predicted RNA-binding 99.4 4.4E-13 9.4E-18 125.7 7.8 77 150-227 12-88 (247)
66 KOG0121 Nuclear cap-binding pr 99.4 4.4E-13 9.6E-18 113.3 6.6 81 327-407 35-115 (153)
67 KOG4212 RNA-binding protein hn 99.4 5.1E-12 1.1E-16 127.3 15.3 169 227-404 41-290 (608)
68 KOG0122 Translation initiation 99.4 9.6E-13 2.1E-17 123.7 8.3 80 327-406 188-267 (270)
69 KOG0122 Translation initiation 99.4 1.1E-12 2.4E-17 123.3 7.9 83 147-229 186-268 (270)
70 PF14259 RRM_6: RNA recognitio 99.4 2.8E-12 6.1E-17 102.1 9.1 70 331-401 1-70 (70)
71 KOG1457 RNA binding protein (c 99.4 5.5E-12 1.2E-16 116.7 11.9 146 149-301 33-274 (284)
72 KOG0126 Predicted RNA-binding 99.4 8.5E-14 1.8E-18 124.7 -0.1 83 144-226 29-111 (219)
73 PF14259 RRM_6: RNA recognitio 99.4 1.6E-12 3.4E-17 103.7 7.0 69 153-222 1-69 (70)
74 KOG0125 Ataxin 2-binding prote 99.4 1.6E-12 3.4E-17 127.0 8.3 84 323-408 91-174 (376)
75 KOG0121 Nuclear cap-binding pr 99.3 1.5E-12 3.3E-17 110.0 6.8 83 145-227 31-113 (153)
76 PLN03120 nucleic acid binding 99.3 5.2E-12 1.1E-16 123.0 10.3 78 328-409 4-81 (260)
77 KOG1456 Heterogeneous nuclear 99.3 9.1E-11 2E-15 116.3 19.0 225 155-398 127-475 (494)
78 KOG4207 Predicted splicing fac 99.3 2.1E-12 4.5E-17 118.2 6.5 82 146-227 9-90 (256)
79 COG0724 RNA-binding proteins ( 99.3 1.8E-11 3.9E-16 124.9 14.0 170 150-388 115-285 (306)
80 KOG0106 Alternative splicing f 99.3 1.6E-12 3.6E-17 123.2 5.6 138 151-311 2-165 (216)
81 KOG0113 U1 small nuclear ribon 99.3 3.9E-12 8.4E-17 122.9 7.6 77 148-224 99-175 (335)
82 PLN03120 nucleic acid binding 99.3 5E-12 1.1E-16 123.1 8.5 76 150-229 4-79 (260)
83 KOG0126 Predicted RNA-binding 99.3 6.6E-13 1.4E-17 119.0 0.8 84 328-411 35-118 (219)
84 KOG0130 RNA-binding protein RB 99.3 1.4E-11 3.1E-16 105.0 8.6 87 322-408 66-152 (170)
85 KOG0107 Alternative splicing f 99.2 1E-11 2.2E-16 111.2 6.2 75 149-228 9-83 (195)
86 PLN03213 repressor of silencin 99.2 1.8E-11 3.9E-16 125.1 8.1 77 149-229 9-87 (759)
87 PLN03213 repressor of silencin 99.2 2.5E-11 5.4E-16 124.1 9.1 76 327-406 9-86 (759)
88 smart00362 RRM_2 RNA recogniti 99.2 4.8E-11 1E-15 94.7 9.0 71 330-402 1-71 (72)
89 PLN03121 nucleic acid binding 99.2 2.6E-11 5.7E-16 116.1 8.6 77 149-229 4-80 (243)
90 smart00360 RRM RNA recognition 99.2 5.9E-11 1.3E-15 93.8 8.8 70 333-402 1-70 (71)
91 smart00362 RRM_2 RNA recogniti 99.2 5.2E-11 1.1E-15 94.4 8.5 71 152-224 1-71 (72)
92 KOG0114 Predicted RNA-binding 99.2 7.3E-11 1.6E-15 96.2 8.7 74 328-404 18-91 (124)
93 KOG0114 Predicted RNA-binding 99.2 4.1E-11 8.8E-16 97.6 7.0 76 149-227 17-92 (124)
94 KOG0130 RNA-binding protein RB 99.2 1.4E-11 3E-16 105.1 4.4 82 146-227 68-149 (170)
95 PLN03121 nucleic acid binding 99.2 9.7E-11 2.1E-15 112.2 10.3 77 328-408 5-81 (243)
96 smart00360 RRM RNA recognition 99.2 9.2E-11 2E-15 92.6 7.7 70 155-224 1-70 (71)
97 KOG0125 Ataxin 2-binding prote 99.2 4E-11 8.6E-16 117.3 6.6 78 149-228 95-172 (376)
98 KOG0128 RNA-binding protein SA 99.1 4.6E-12 1E-16 138.1 -0.7 225 149-404 570-811 (881)
99 KOG0111 Cyclophilin-type pepti 99.1 2.4E-11 5.3E-16 112.1 3.7 82 327-408 9-90 (298)
100 smart00361 RRM_1 RNA recogniti 99.1 2.3E-10 5E-15 90.9 7.7 61 342-402 2-69 (70)
101 cd00590 RRM RRM (RNA recogniti 99.1 5.1E-10 1.1E-14 89.2 9.6 73 330-403 1-73 (74)
102 KOG0415 Predicted peptidyl pro 99.1 2E-10 4.3E-15 113.2 7.3 86 144-229 233-318 (479)
103 KOG0111 Cyclophilin-type pepti 99.1 6E-11 1.3E-15 109.5 3.2 82 148-229 8-89 (298)
104 KOG0120 Splicing factor U2AF, 99.1 4.6E-10 1E-14 119.1 9.9 160 147-315 286-490 (500)
105 KOG1365 RNA-binding protein Fu 99.0 6E-10 1.3E-14 111.0 9.2 148 149-300 160-349 (508)
106 cd00590 RRM RRM (RNA recogniti 99.0 7.8E-10 1.7E-14 88.1 8.3 72 152-224 1-72 (74)
107 KOG0108 mRNA cleavage and poly 99.0 3.4E-10 7.3E-15 119.6 7.7 80 329-408 19-98 (435)
108 COG0724 RNA-binding proteins ( 99.0 7.3E-10 1.6E-14 113.0 9.6 79 328-406 115-193 (306)
109 KOG4307 RNA binding protein RB 99.0 9.8E-09 2.1E-13 109.5 17.9 142 146-293 307-494 (944)
110 PF13893 RRM_5: RNA recognitio 99.0 1.4E-09 3E-14 82.4 8.5 56 345-405 1-56 (56)
111 KOG0116 RasGAP SH3 binding pro 99.0 1.4E-09 3.1E-14 114.2 11.6 78 329-407 289-366 (419)
112 KOG0108 mRNA cleavage and poly 99.0 3.9E-10 8.4E-15 119.2 7.0 79 151-229 19-97 (435)
113 KOG4210 Nuclear localization s 99.0 7.3E-10 1.6E-14 112.1 8.1 174 148-403 86-259 (285)
114 smart00361 RRM_1 RNA recogniti 99.0 1.2E-09 2.7E-14 86.7 6.9 61 164-224 2-69 (70)
115 KOG4660 Protein Mei2, essentia 99.0 2.5E-09 5.5E-14 112.3 10.7 72 147-223 72-143 (549)
116 KOG0415 Predicted peptidyl pro 98.9 1.3E-09 2.9E-14 107.4 5.7 84 327-410 238-321 (479)
117 KOG4208 Nucleolar RNA-binding 98.9 2.9E-09 6.3E-14 98.4 7.4 78 328-405 49-127 (214)
118 KOG4307 RNA binding protein RB 98.9 6.9E-09 1.5E-13 110.6 9.5 76 329-404 868-943 (944)
119 KOG0129 Predicted RNA-binding 98.8 3E-08 6.6E-13 103.4 13.3 144 147-293 256-431 (520)
120 KOG0129 Predicted RNA-binding 98.8 5.2E-08 1.1E-12 101.7 14.1 157 230-389 259-432 (520)
121 KOG4454 RNA binding protein (R 98.8 1E-09 2.2E-14 101.7 1.3 137 148-297 7-147 (267)
122 KOG0128 RNA-binding protein SA 98.8 3.1E-10 6.8E-15 124.1 -3.1 150 148-316 665-814 (881)
123 PF13893 RRM_5: RNA recognitio 98.8 6.5E-09 1.4E-13 78.6 4.8 55 167-226 1-55 (56)
124 KOG0132 RNA polymerase II C-te 98.7 8.2E-09 1.8E-13 111.7 4.9 109 138-252 409-528 (894)
125 KOG0226 RNA-binding proteins [ 98.7 2E-08 4.3E-13 95.4 4.7 163 231-403 97-265 (290)
126 KOG0132 RNA polymerase II C-te 98.6 4.9E-08 1.1E-12 105.9 7.4 78 325-408 418-495 (894)
127 KOG4661 Hsp27-ERE-TATA-binding 98.6 9.8E-08 2.1E-12 99.7 9.3 81 149-229 404-484 (940)
128 KOG4661 Hsp27-ERE-TATA-binding 98.6 6.9E-08 1.5E-12 100.8 7.5 80 327-406 404-483 (940)
129 KOG4206 Spliceosomal protein s 98.6 8.4E-08 1.8E-12 90.4 7.4 81 328-411 9-93 (221)
130 KOG4208 Nucleolar RNA-binding 98.6 5.5E-08 1.2E-12 90.0 5.8 77 148-224 47-124 (214)
131 KOG0112 Large RNA-binding prot 98.6 3.4E-08 7.3E-13 108.8 4.9 165 142-318 364-532 (975)
132 KOG4454 RNA binding protein (R 98.6 3.1E-08 6.7E-13 92.0 3.0 138 227-392 6-147 (267)
133 KOG4849 mRNA cleavage factor I 98.5 8E-06 1.7E-10 81.0 18.2 76 328-403 80-157 (498)
134 KOG0112 Large RNA-binding prot 98.5 8.8E-08 1.9E-12 105.7 5.1 151 230-401 372-522 (975)
135 KOG0153 Predicted RNA-binding 98.5 2.2E-07 4.9E-12 92.2 6.3 79 145-229 223-302 (377)
136 KOG0153 Predicted RNA-binding 98.4 4.1E-07 8.9E-12 90.4 7.3 74 327-406 227-301 (377)
137 KOG0533 RRM motif-containing p 98.4 2.3E-06 5E-11 83.6 12.0 81 328-409 83-163 (243)
138 KOG0226 RNA-binding proteins [ 98.4 2.7E-07 6E-12 87.8 4.2 154 151-312 97-265 (290)
139 KOG4209 Splicing factor RNPS1, 98.3 1.5E-06 3.3E-11 85.1 8.3 81 327-408 100-180 (231)
140 KOG0533 RRM motif-containing p 98.3 8E-07 1.7E-11 86.7 6.3 78 149-227 82-159 (243)
141 KOG2193 IGF-II mRNA-binding pr 98.3 1.5E-07 3.3E-12 95.2 0.7 153 231-405 2-154 (584)
142 PF04059 RRM_2: RNA recognitio 98.3 4.3E-06 9.4E-11 69.8 8.9 69 329-397 2-72 (97)
143 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.6E-11 92.4 6.3 73 149-222 287-359 (419)
144 KOG1995 Conserved Zn-finger pr 98.3 4.4E-06 9.5E-11 84.1 9.9 82 327-408 65-154 (351)
145 KOG4676 Splicing factor, argin 98.3 7.9E-07 1.7E-11 89.4 4.4 208 150-399 7-217 (479)
146 KOG4209 Splicing factor RNPS1, 98.2 1.1E-06 2.4E-11 86.0 4.7 82 145-227 96-177 (231)
147 KOG3152 TBP-binding protein, a 98.2 1.6E-06 3.5E-11 82.9 4.0 73 149-221 73-157 (278)
148 PF04059 RRM_2: RNA recognitio 98.1 9.4E-06 2E-10 67.8 7.7 68 151-218 2-71 (97)
149 KOG1548 Transcription elongati 97.9 2.8E-05 6E-10 77.6 7.6 79 328-407 134-220 (382)
150 KOG4660 Protein Mei2, essentia 97.9 5.9E-06 1.3E-10 87.4 2.9 70 327-401 74-143 (549)
151 KOG0151 Predicted splicing reg 97.9 3.1E-05 6.8E-10 83.7 7.4 79 149-227 173-254 (877)
152 PF11608 Limkain-b1: Limkain b 97.8 6.7E-05 1.5E-09 59.6 7.2 67 329-405 3-74 (90)
153 PF08777 RRM_3: RNA binding mo 97.8 2.8E-05 6E-10 66.6 5.5 70 329-404 2-76 (105)
154 KOG2193 IGF-II mRNA-binding pr 97.8 3.5E-06 7.5E-11 85.6 -0.7 147 151-314 2-154 (584)
155 KOG1995 Conserved Zn-finger pr 97.8 2.4E-05 5.2E-10 78.8 4.5 85 147-231 63-155 (351)
156 KOG0151 Predicted splicing reg 97.6 8.2E-05 1.8E-09 80.6 6.4 82 327-408 173-257 (877)
157 PF11608 Limkain-b1: Limkain b 97.6 0.00014 3E-09 57.9 5.0 69 151-229 3-76 (90)
158 KOG0921 Dosage compensation co 97.5 0.0005 1.1E-08 76.9 10.7 15 271-285 898-912 (1282)
159 PF08777 RRM_3: RNA binding mo 97.3 0.00045 9.8E-09 59.2 5.5 58 151-214 2-59 (105)
160 COG5175 MOT2 Transcriptional r 97.2 0.00034 7.3E-09 69.4 4.7 103 149-251 113-241 (480)
161 KOG4849 mRNA cleavage factor I 97.2 0.00024 5.1E-09 70.8 3.4 76 149-224 79-156 (498)
162 KOG4210 Nuclear localization s 97.2 0.00025 5.5E-09 72.0 3.1 80 149-229 183-263 (285)
163 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0016 3.5E-08 48.2 5.2 52 151-209 2-53 (53)
164 COG5175 MOT2 Transcriptional r 97.0 0.0017 3.7E-08 64.6 6.6 80 327-406 113-201 (480)
165 KOG1855 Predicted RNA-binding 96.9 0.016 3.6E-07 59.9 13.4 68 327-394 230-310 (484)
166 KOG0115 RNA-binding protein p5 96.9 0.0012 2.6E-08 63.7 4.5 103 204-311 6-108 (275)
167 KOG0115 RNA-binding protein p5 96.8 0.0023 5E-08 61.7 6.1 95 286-397 5-99 (275)
168 KOG1996 mRNA splicing factor [ 96.8 0.0028 6.1E-08 62.0 6.6 63 342-404 300-363 (378)
169 KOG1855 Predicted RNA-binding 96.8 0.0011 2.5E-08 68.1 4.2 66 149-214 230-308 (484)
170 KOG2318 Uncharacterized conser 96.8 0.013 2.7E-07 62.9 11.5 130 145-313 169-304 (650)
171 KOG2314 Translation initiation 96.7 0.0021 4.6E-08 68.3 5.7 69 329-398 59-133 (698)
172 KOG2314 Translation initiation 96.7 0.0064 1.4E-07 64.8 8.6 70 148-218 56-131 (698)
173 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0034 7.5E-08 46.4 4.5 52 329-387 2-53 (53)
174 KOG2416 Acinus (induces apopto 96.6 0.0022 4.7E-08 68.7 4.6 66 146-217 440-506 (718)
175 KOG2202 U2 snRNP splicing fact 96.5 0.0012 2.5E-08 63.9 1.8 63 343-406 83-146 (260)
176 KOG3973 Uncharacterized conser 96.3 0.029 6.3E-07 56.4 10.3 6 344-349 244-249 (465)
177 KOG3152 TBP-binding protein, a 96.3 0.0031 6.7E-08 60.8 3.5 72 328-399 74-157 (278)
178 KOG1999 RNA polymerase II tran 96.0 0.022 4.8E-07 64.8 8.6 29 190-218 208-236 (1024)
179 PF08952 DUF1866: Domain of un 96.0 0.021 4.5E-07 51.2 6.7 55 343-406 51-105 (146)
180 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.029 6.3E-07 47.4 7.3 72 328-401 6-84 (100)
181 KOG2202 U2 snRNP splicing fact 95.8 0.0027 5.9E-08 61.5 0.6 61 165-226 83-144 (260)
182 PF10309 DUF2414: Protein of u 95.5 0.046 9.9E-07 41.6 5.9 55 328-390 5-62 (62)
183 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.043 9.4E-07 46.3 5.8 71 149-221 5-82 (100)
184 KOG1996 mRNA splicing factor [ 95.0 0.055 1.2E-06 53.3 6.2 61 164-224 300-361 (378)
185 KOG4676 Splicing factor, argin 95.0 0.03 6.5E-07 57.3 4.5 76 329-405 8-86 (479)
186 PF08952 DUF1866: Domain of un 94.7 0.046 1E-06 49.0 4.6 70 149-227 26-104 (146)
187 PF08675 RNA_bind: RNA binding 94.0 0.19 4.2E-06 40.3 6.2 55 150-213 9-63 (87)
188 KOG2416 Acinus (induces apopto 93.9 0.04 8.6E-07 59.4 2.9 75 324-404 440-518 (718)
189 PRK11634 ATP-dependent RNA hel 93.9 0.55 1.2E-05 53.8 12.2 58 339-405 498-560 (629)
190 PF10446 DUF2457: Protein of u 93.6 0.04 8.7E-07 57.7 2.1 12 29-40 25-36 (458)
191 PF10309 DUF2414: Protein of u 93.0 0.41 9E-06 36.4 6.3 53 151-212 6-62 (62)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 92.8 0.14 3E-06 48.4 4.3 73 149-221 6-84 (176)
193 KOG1999 RNA polymerase II tran 92.7 0.19 4.1E-06 57.6 5.9 24 274-297 209-232 (1024)
194 KOG2591 c-Mpl binding protein, 92.5 0.31 6.8E-06 52.3 6.9 72 327-405 174-249 (684)
195 KOG2591 c-Mpl binding protein, 92.5 0.42 9.2E-06 51.4 7.8 86 203-296 148-233 (684)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 92.5 0.24 5.2E-06 46.8 5.5 72 328-399 7-84 (176)
197 PF04147 Nop14: Nop14-like fam 91.6 0.14 3.1E-06 60.3 3.6 14 162-175 426-439 (840)
198 KOG2068 MOT2 transcription fac 91.6 0.13 2.7E-06 52.3 2.7 78 149-226 76-159 (327)
199 PF04931 DNA_pol_phi: DNA poly 91.2 0.35 7.6E-06 57.0 6.3 7 167-173 741-747 (784)
200 PF15023 DUF4523: Protein of u 91.1 0.55 1.2E-05 41.6 5.7 70 329-406 87-160 (166)
201 PF08675 RNA_bind: RNA binding 90.9 0.89 1.9E-05 36.6 6.2 54 329-391 10-63 (87)
202 PF07576 BRAP2: BRCA1-associat 90.8 1.9 4E-05 37.2 8.7 67 329-397 14-81 (110)
203 PF10446 DUF2457: Protein of u 90.5 0.23 4.9E-06 52.3 3.3 8 151-158 122-129 (458)
204 PF04847 Calcipressin: Calcipr 88.8 0.8 1.7E-05 43.5 5.3 59 341-405 8-68 (184)
205 KOG2135 Proteins containing th 88.0 0.28 6.1E-06 51.7 1.9 75 149-230 371-446 (526)
206 KOG0262 RNA polymerase I, larg 86.4 1.9 4.1E-05 50.9 7.4 20 154-173 1445-1464(1640)
207 KOG2135 Proteins containing th 85.8 0.59 1.3E-05 49.4 2.9 73 328-407 372-445 (526)
208 KOG2253 U1 snRNP complex, subu 85.5 0.5 1.1E-05 52.1 2.2 70 326-404 38-107 (668)
209 PF11767 SET_assoc: Histone ly 84.9 3 6.6E-05 32.3 5.7 54 339-401 11-64 (66)
210 KOG4483 Uncharacterized conser 84.8 4.9 0.00011 41.8 8.7 65 149-221 390-455 (528)
211 KOG0804 Cytoplasmic Zn-finger 84.3 2.4 5.3E-05 44.8 6.5 69 328-398 74-143 (493)
212 PF15023 DUF4523: Protein of u 83.8 4.1 8.8E-05 36.3 6.7 71 231-316 87-161 (166)
213 PF03880 DbpA: DbpA RNA bindin 83.7 4.1 8.8E-05 32.4 6.2 58 339-405 12-74 (74)
214 KOG2068 MOT2 transcription fac 83.3 0.57 1.2E-05 47.6 1.4 78 328-405 77-160 (327)
215 PF07576 BRAP2: BRCA1-associat 83.1 7.6 0.00016 33.5 8.0 66 231-300 13-79 (110)
216 PF10567 Nab6_mRNP_bdg: RNA-re 82.9 57 0.0012 33.0 15.0 61 149-209 14-81 (309)
217 PF04847 Calcipressin: Calcipr 82.8 2.4 5.2E-05 40.3 5.3 59 163-227 8-68 (184)
218 KOG0804 Cytoplasmic Zn-finger 82.1 3 6.5E-05 44.1 6.1 68 150-219 74-142 (493)
219 KOG4574 RNA-binding protein (c 81.2 0.45 9.7E-06 53.7 -0.2 69 153-227 301-371 (1007)
220 KOG2253 U1 snRNP complex, subu 80.3 0.96 2.1E-05 50.0 1.9 70 147-225 37-106 (668)
221 KOG4285 Mitotic phosphoprotein 80.1 3.2 7E-05 41.6 5.2 63 329-399 198-260 (350)
222 PF07292 NID: Nmi/IFP 35 domai 78.4 2.8 6E-05 34.5 3.6 72 278-350 1-74 (88)
223 PF05285 SDA1: SDA1; InterPro 77.7 1.3 2.9E-05 46.2 2.0 8 162-169 190-197 (324)
224 KOG2318 Uncharacterized conser 77.5 11 0.00023 41.4 8.5 82 325-406 171-304 (650)
225 PF11767 SET_assoc: Histone ly 75.7 12 0.00026 29.0 6.2 53 161-222 11-63 (66)
226 KOG0943 Predicted ubiquitin-pr 74.4 1.8 3.9E-05 50.8 2.0 11 17-27 1627-1637(3015)
227 KOG4285 Mitotic phosphoprotein 74.3 9.4 0.0002 38.4 6.6 64 150-221 197-260 (350)
228 KOG0943 Predicted ubiquitin-pr 73.9 2.5 5.3E-05 49.7 2.9 11 231-241 1930-1940(3015)
229 COG5638 Uncharacterized conser 73.1 11 0.00024 39.3 7.0 40 146-185 142-186 (622)
230 KOG1924 RhoA GTPase effector D 71.9 12 0.00027 42.4 7.5 13 200-212 207-219 (1102)
231 PF09073 BUD22: BUD22; InterP 71.5 2.6 5.7E-05 45.9 2.4 22 379-400 408-429 (432)
232 KOG0526 Nucleosome-binding fac 71.3 6.5 0.00014 42.6 5.1 8 157-164 534-541 (615)
233 PF07292 NID: Nmi/IFP 35 domai 71.0 2.4 5.3E-05 34.8 1.5 58 195-252 1-74 (88)
234 COG5593 Nucleic-acid-binding p 69.3 4.3 9.4E-05 43.8 3.3 19 153-171 801-819 (821)
235 KOG4574 RNA-binding protein (c 68.8 4.6 0.0001 46.0 3.5 77 231-318 299-375 (1007)
236 KOG2038 CAATT-binding transcri 65.1 3 6.4E-05 47.1 1.1 7 27-33 796-802 (988)
237 KOG2044 5'-3' exonuclease HKE1 64.9 73 0.0016 36.7 11.6 17 276-292 632-648 (931)
238 COG4547 CobT Cobalamin biosynt 64.8 8.7 0.00019 40.9 4.4 19 149-167 315-333 (620)
239 PF03880 DbpA: DbpA RNA bindin 63.6 13 0.00028 29.4 4.3 58 160-226 11-73 (74)
240 KOG2295 C2H2 Zn-finger protein 60.5 2.8 6.2E-05 45.3 -0.0 72 147-218 228-299 (648)
241 KOG2141 Protein involved in hi 59.3 11 0.00023 42.6 4.1 27 372-398 623-649 (822)
242 KOG2773 Apoptosis antagonizing 58.7 4 8.6E-05 43.3 0.7 13 5-17 28-40 (483)
243 PHA02664 hypothetical protein; 57.8 21 0.00046 36.0 5.5 18 4-21 391-408 (534)
244 KOG2141 Protein involved in hi 55.8 5.2 0.00011 44.9 1.0 15 335-349 551-565 (822)
245 KOG0526 Nucleosome-binding fac 54.7 5.7 0.00012 43.0 1.1 9 161-169 548-556 (615)
246 KOG4410 5-formyltetrahydrofola 54.6 27 0.00059 34.8 5.6 57 152-213 332-395 (396)
247 KOG2147 Nucleolar protein invo 54.1 24 0.00053 40.0 5.7 18 158-175 388-409 (823)
248 KOG0262 RNA polymerase I, larg 52.1 13 0.00027 44.5 3.3 6 8-13 1294-1299(1640)
249 KOG4019 Calcineurin-mediated s 49.5 13 0.00028 34.7 2.4 71 329-405 11-87 (193)
250 KOG2891 Surface glycoprotein [ 49.3 27 0.00058 34.6 4.6 35 327-361 148-194 (445)
251 COG5406 Nucleosome binding fac 48.9 7.3 0.00016 43.0 0.8 7 29-35 895-901 (1001)
252 PF05918 API5: Apoptosis inhib 48.7 5.8 0.00013 44.2 0.0 8 161-168 189-196 (556)
253 smart00596 PRE_C2HC PRE_C2HC d 48.5 25 0.00054 27.4 3.4 62 165-229 2-64 (69)
254 PF05285 SDA1: SDA1; InterPro 46.8 14 0.00031 38.5 2.6 11 241-251 230-240 (324)
255 KOG4410 5-formyltetrahydrofola 46.2 33 0.00071 34.2 4.7 46 329-380 331-377 (396)
256 KOG3118 Disrupter of silencing 44.9 29 0.00062 37.4 4.3 15 29-43 14-28 (517)
257 PF07530 PRE_C2HC: Associated 44.0 29 0.00062 27.1 3.2 62 165-229 2-64 (68)
258 KOG0020 Endoplasmic reticulum 43.8 1.1E+02 0.0024 33.3 8.3 26 149-175 335-360 (785)
259 COG4907 Predicted membrane pro 43.5 41 0.0009 36.0 5.2 43 342-394 488-539 (595)
260 PF02724 CDC45: CDC45-like pro 41.9 31 0.00066 39.6 4.4 9 247-255 372-380 (622)
261 PF02724 CDC45: CDC45-like pro 41.0 31 0.00067 39.6 4.3 11 245-255 337-347 (622)
262 KOG4434 Molecular chaperone SE 40.8 74 0.0016 33.1 6.4 19 4-22 259-277 (520)
263 PRK10590 ATP-dependent RNA hel 40.8 1.4E+02 0.003 32.9 9.3 11 385-395 358-368 (456)
264 KOG2773 Apoptosis antagonizing 38.7 26 0.00056 37.5 2.9 7 396-402 445-451 (483)
265 PRK14891 50S ribosomal protein 38.6 9.6 0.00021 33.3 -0.2 10 28-37 46-55 (131)
266 PF03468 XS: XS domain; Inter 38.6 48 0.001 28.9 4.2 53 152-207 10-71 (116)
267 KOG4213 RNA-binding protein La 38.3 36 0.00078 31.7 3.4 57 150-211 111-169 (205)
268 COG4547 CobT Cobalamin biosynt 37.3 37 0.0008 36.4 3.7 8 217-224 426-433 (620)
269 PF14111 DUF4283: Domain of un 36.1 58 0.0013 29.5 4.6 98 161-266 28-139 (153)
270 KOG2236 Uncharacterized conser 35.8 6.1E+02 0.013 27.6 18.7 13 277-289 261-273 (483)
271 KOG2295 C2H2 Zn-finger protein 35.3 9.3 0.0002 41.6 -0.9 70 327-396 230-299 (648)
272 PF09073 BUD22: BUD22; InterP 34.6 66 0.0014 35.1 5.5 7 336-342 405-411 (432)
273 COG5271 MDN1 AAA ATPase contai 34.5 23 0.00049 44.6 1.9 22 370-391 4408-4429(4600)
274 PF02714 DUF221: Domain of unk 33.4 45 0.00099 34.7 3.9 57 195-253 1-57 (325)
275 KOG2044 5'-3' exonuclease HKE1 32.7 6.5E+02 0.014 29.5 12.5 6 390-395 759-764 (931)
276 PRK14548 50S ribosomal protein 32.2 1.7E+02 0.0036 23.9 6.0 57 153-212 23-81 (84)
277 KOG4264 Nucleo-cytoplasmic pro 31.3 21 0.00046 38.6 0.9 16 196-211 213-228 (694)
278 KOG3871 Cell adhesion complex 31.1 21 0.00046 36.8 0.9 9 231-239 236-244 (449)
279 PF14111 DUF4283: Domain of un 31.1 49 0.0011 30.0 3.2 82 276-362 56-139 (153)
280 PRK11634 ATP-dependent RNA hel 31.1 1E+02 0.0022 35.5 6.5 9 380-388 501-509 (629)
281 KOG4483 Uncharacterized conser 31.0 1E+02 0.0022 32.4 5.6 56 230-294 391-446 (528)
282 PF03468 XS: XS domain; Inter 28.7 88 0.0019 27.3 4.2 56 329-387 9-74 (116)
283 TIGR03636 L23_arch archaeal ri 28.2 2.3E+02 0.005 22.7 6.1 57 153-212 16-74 (77)
284 PF11823 DUF3343: Protein of u 28.1 1.8E+02 0.0038 22.8 5.5 61 193-255 2-63 (73)
285 PF15513 DUF4651: Domain of un 26.4 1.4E+02 0.0031 22.8 4.3 19 165-183 9-27 (62)
286 PTZ00415 transmission-blocking 26.1 42 0.0009 41.9 2.1 7 259-265 397-403 (2849)
287 PF05477 SURF2: Surfeit locus 25.9 29 0.00062 34.4 0.7 19 4-22 90-108 (244)
288 KOG3262 H/ACA small nucleolar 25.9 1.1E+02 0.0024 28.7 4.4 19 342-360 88-106 (215)
289 KOG1980 Uncharacterized conser 25.8 46 0.001 37.2 2.3 18 165-182 465-482 (754)
290 COG5193 LHP1 La protein, small 25.2 28 0.00061 36.6 0.5 62 149-210 173-244 (438)
291 TIGR01651 CobT cobaltochelatas 25.1 62 0.0013 36.3 3.1 9 151-159 296-304 (600)
292 COG4907 Predicted membrane pro 23.7 72 0.0016 34.3 3.1 10 276-285 418-427 (595)
293 KOG3241 Uncharacterized conser 23.5 93 0.002 28.8 3.4 6 17-22 104-109 (227)
294 PF10567 Nab6_mRNP_bdg: RNA-re 23.0 1.9E+02 0.0041 29.4 5.7 79 328-406 15-106 (309)
295 KOG4264 Nucleo-cytoplasmic pro 22.9 55 0.0012 35.6 2.1 7 249-255 228-234 (694)
296 KOG4365 Uncharacterized conser 22.6 17 0.00038 38.4 -1.5 78 329-407 4-81 (572)
297 KOG4008 rRNA processing protei 22.0 66 0.0014 31.4 2.3 38 145-182 35-72 (261)
298 KOG2147 Nucleolar protein invo 21.6 63 0.0014 36.9 2.4 14 379-392 694-707 (823)
299 COG5638 Uncharacterized conser 21.5 2.1E+02 0.0045 30.3 5.8 79 326-404 144-292 (622)
300 TIGR01651 CobT cobaltochelatas 21.5 74 0.0016 35.7 2.9 9 342-350 542-550 (600)
301 KOG1295 Nonsense-mediated deca 21.4 1.2E+02 0.0026 31.9 4.2 71 149-219 6-79 (376)
302 KOG2256 Predicted protein invo 21.3 37 0.0008 38.2 0.5 12 11-22 8-19 (661)
303 KOG2897 DNA-binding protein YL 20.7 54 0.0012 34.2 1.5 6 165-170 134-139 (390)
304 KOG4213 RNA-binding protein La 20.6 1.5E+02 0.0033 27.7 4.2 59 230-294 111-169 (205)
305 PTZ00438 gamete antigen 27/25- 20.4 43 0.00093 33.0 0.7 20 3-22 74-93 (374)
306 KOG1295 Nonsense-mediated deca 20.1 1.1E+02 0.0024 32.2 3.6 69 329-397 8-79 (376)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.7e-47 Score=377.28 Aligned_cols=262 Identities=31% Similarity=0.513 Sum_probs=243.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE-eeeccCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTAP 226 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l-~G~~i~v~~ 226 (648)
...+.|||+.||.++.|++|.-||++.|+|-+++||+|+.+|.++|||||.|.+++.|++||+.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999999999877 599999999
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
+..+++|||+|||.++++++|.+.|++.++ +|++|.|...+.+..++||||||+|.++..|..|..+|-...|.+ .+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl--wg 237 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL--WG 237 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee--cC
Confidence 999999999999999999999999999987 799999999998899999999999999999999999887665543 37
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
..+.|.||.+........+.+.+.|||+||+.++|++.|+.+|++||.|+.|+.++| ||||.|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999877 999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEeecCCCCCCccCCCC
Q 006370 387 INAINNKEFSDGNSKVKLRARLSNPMPKTQAVKG 420 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~~~~~~~~~~~~~g 420 (648)
++.|||+.|.|..|.|++++...+....+...++
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~ 343 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQ 343 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccchhhhhc
Confidence 9999999999999999998877665555433333
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1e-41 Score=369.91 Aligned_cols=248 Identities=31% Similarity=0.513 Sum_probs=221.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe-eeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~-G~~i~v~~~ 227 (648)
..++|||+|||+++++++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.||+..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4589999999999999999999999999999999999 88999999999999999999999999998885 888899999
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
...++|||+|||.++|+++|.+.|++++. .+..+.++......++++|||||+|.++++|..|++.|+...+.+ .++
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr 212 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 212 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCc
Confidence 89999999999999999999999999975 255555554444567889999999999999999999887544322 378
Q ss_pred ceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhccc--CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 006370 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (648)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~ 385 (648)
.|.|.|+.+........+...++|||+||++.+|+++|+++|++| |.|+.|.++ ++||||+|.+.++|.+
T Consensus 213 ~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~k 284 (578)
T TIGR01648 213 VIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVK 284 (578)
T ss_pred eEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHH
Confidence 999999998777666666677899999999999999999999999 999999885 3599999999999999
Q ss_pred HHHHhCCCeecCCeeEEEEEeec
Q 006370 386 CINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
||+.||+..|.|+.|+|.++...
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccCC
Confidence 99999999999999999987543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.6e-42 Score=364.91 Aligned_cols=255 Identities=22% Similarity=0.386 Sum_probs=224.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
...+|||+|||.++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986653
Q ss_pred ------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeee
Q 006370 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (648)
Q Consensus 229 ------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~ 302 (648)
...+|||+|||..+++++|+.+|++||. |..+.++.+. .++.++|||||+|.+.++|..|++.|++..+.
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~- 157 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ--IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS- 157 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC--EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-
Confidence 3568999999999999999999999998 9999998874 47789999999999999999999999997652
Q ss_pred CCCCcceeeeccCCCCCCCc------------------------------------------------------------
Q 006370 303 GHPERTVKVAFAEPLREPDP------------------------------------------------------------ 322 (648)
Q Consensus 303 g~~~~~l~v~~a~~~~~~~~------------------------------------------------------------ 322 (648)
+ ....|.|.++........
T Consensus 158 g-~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T TIGR01661 158 G-CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVA 236 (352)
T ss_pred C-CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccc
Confidence 1 235667776642220000
Q ss_pred ---------------------------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEE
Q 006370 323 ---------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (648)
Q Consensus 323 ---------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV 375 (648)
.......+|||+|||+.+++++|+++|++||.|+.|+|+++..|+.++|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 237 QQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEE
Confidence 00011225999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 376 ~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
+|.+.++|.+||..|||..|.|+.|+|.++...
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999999999987643
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.2e-38 Score=351.31 Aligned_cols=252 Identities=19% Similarity=0.394 Sum_probs=223.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC---
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS--- 227 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~--- 227 (648)
.+|||+|||.++|+++|+++|+.||.|..|+|+++ .+|+++|||||+|.+.++|.+||+.||+..+.++.|.|...
T Consensus 89 ~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 89 GNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred CceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 47999999999999999999999999999999988 47889999999999999999999999999999998876432
Q ss_pred --------CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCC
Q 006370 228 --------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (648)
Q Consensus 228 --------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~ 299 (648)
...++|||+||+.++|+++|+++|+.||. |..+.++.+. +++++|||||+|.+.++|.+|++.|++..
T Consensus 168 ~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~--i~~~~i~~~~--~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 168 HEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE--ITSAAVMKDG--SGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred cccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC--EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 23467999999999999999999999999 9999999884 78999999999999999999999999998
Q ss_pred eeeCCCCcceeeeccCCCCCCCc-------------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCC
Q 006370 300 VVFGHPERTVKVAFAEPLREPDP-------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (648)
Q Consensus 300 ~~~g~~~~~l~v~~a~~~~~~~~-------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~ 366 (648)
+.....++.+.|.++..+..... ......++|||+||+..+|+++|+++|++||.|+.|+|+.+ .+
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~ 322 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EK 322 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CC
Confidence 84333377888887765543311 11234568999999999999999999999999999999999 78
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 367 ~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
+.++|||||+|.+.++|.+||..|||+.|.|+.|.|.++...
T Consensus 323 g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 323 GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999999999999999999999999999999999887643
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.1e-37 Score=348.32 Aligned_cols=245 Identities=23% Similarity=0.442 Sum_probs=221.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC--
Q 006370 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED-- 229 (648)
Q Consensus 152 tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~-- 229 (648)
+|||+|||.++|+++|+++|++||.|++|+|+++..|++++|||||+|.+.++|.+||..|++..|.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999976632
Q ss_pred ------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006370 230 ------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (648)
Q Consensus 230 ------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g 303 (648)
..+|||+||+.++++++|+++|+.||. |..|+|+.+. +++++|||||+|.+.++|.+|+..|++..+
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~--i~~~~i~~~~--~g~skg~afV~F~~~e~A~~Ai~~lng~~~--- 154 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN--ILSCKVATDE--NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--- 154 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCC--cceeEeeecC--CCCcccEEEEEECCHHHHHHHHHHhcccEe---
Confidence 457999999999999999999999998 9999999874 788999999999999999999999999877
Q ss_pred CCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 304 ~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
.++.|.|.................++|||+||+.++|+++|+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|
T Consensus 155 -~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 155 -NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred -cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHH
Confidence 47888887655444332223345678999999999999999999999999999999988 4688999999999999999
Q ss_pred HHHHHHhCCCeec----CCeeEEEEE
Q 006370 384 VACINAINNKEFS----DGNSKVKLR 405 (648)
Q Consensus 384 ~~Ai~~lng~~~~----g~~i~v~~~ 405 (648)
.+|++.||+..|. |+.+.|..+
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecc
Confidence 9999999999999 888777654
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.6e-37 Score=284.69 Aligned_cols=254 Identities=22% Similarity=0.408 Sum_probs=225.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
....|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..||+..|..+.|+|..+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred C------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeee
Q 006370 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (648)
Q Consensus 229 ~------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~ 302 (648)
+ ..+|||.+||..+|..+|.++|++||. |..-+|+.| +.+|.++|.+||.|....+|+.|++.||+..- .
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr--IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~ 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR--IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-S 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh--hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCC-C
Confidence 5 568999999999999999999999998 877777777 46899999999999999999999999999754 2
Q ss_pred CCCCcceeeeccCCCCCCC----------------------------------------------------------ccc
Q 006370 303 GHPERTVKVAFAEPLREPD----------------------------------------------------------PEI 324 (648)
Q Consensus 303 g~~~~~l~v~~a~~~~~~~----------------------------------------------------------~~~ 324 (648)
+ ...+|.|.|+....+.. +..
T Consensus 196 g-~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 196 G-CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred C-CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 2 25678888873211100 000
Q ss_pred cccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
....++|||-||..++++.-|+++|.+||.|+.|+|++|..|++-+|||||++.+-++|..||..|||..+.++.+.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 11236899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 754
No 7
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=302.55 Aligned_cols=251 Identities=25% Similarity=0.394 Sum_probs=222.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
..||||++||+.+|.++|.++|+.+|+|..|.++.++.++.++||+||.|+-.++++.||+.+++..|.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999888754421
Q ss_pred --------------------------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceE
Q 006370 230 --------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGF 277 (648)
Q Consensus 230 --------------------------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~ 277 (648)
..+|+|+||||.+.+.+|+.+|+.||. |.+|.|.+.. .++..||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~--V~Ei~IP~k~--dgklcGF 160 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK--VVEIVIPRKK--DGKLCGF 160 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce--EEEEEcccCC--CCCccce
Confidence 457999999999999999999999999 9999999753 6777799
Q ss_pred EEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCC-------------------------------------
Q 006370 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP------------------------------------- 320 (648)
Q Consensus 278 afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~------------------------------------- 320 (648)
|||+|....+|..|++.+|+..| .+++|.|+||.++...
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i----~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e 236 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKI----DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGE 236 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCcee----cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccc
Confidence 99999999999999999999999 5999999999222100
Q ss_pred ---------C---------------------------------------ccccccceeeeecCCCCCCCHHHHHHhhccc
Q 006370 321 ---------D---------------------------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGY 352 (648)
Q Consensus 321 ---------~---------------------------------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~ 352 (648)
. .....-..+|||+|||+++|++.|.++|++|
T Consensus 237 ~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF 316 (678)
T KOG0127|consen 237 EDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF 316 (678)
T ss_pred ccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh
Confidence 0 0000012689999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-CeecCCeeEEEEEeec
Q 006370 353 GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-----NN-KEFSDGNSKVKLRARL 408 (648)
Q Consensus 353 G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l-----ng-~~~~g~~i~v~~~~~~ 408 (648)
|.|..+.|+.++.|++++|.|||.|.+..+|..||.+. .| ..|.|+.|+|.+++..
T Consensus 317 G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 317 GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99999999999999999999999999999999999876 23 7899999999987754
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3e-34 Score=315.49 Aligned_cols=248 Identities=23% Similarity=0.391 Sum_probs=212.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||. |++..|.|++|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3467899999999999999999999999999999999999999999999999999999999997 899999999987754
Q ss_pred CC------------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHH
Q 006370 227 SE------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (648)
Q Consensus 227 ~~------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A 288 (648)
+. ..++|||+|||..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~--i~~v~~~~d~-~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD--IEDVQLHRDP-ETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcC-CCCccceEEEEEECCHHHH
Confidence 31 1478999999999999999999999999 9999999985 4679999999999999999
Q ss_pred HHHHHHhCCCCeeeCCCCcceeeeccCCCCCC------------------------------------------------
Q 006370 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREP------------------------------------------------ 320 (648)
Q Consensus 289 ~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~------------------------------------------------ 320 (648)
.+|+..|++..+ .++.|.|.|+......
T Consensus 242 ~~A~~~l~g~~i----~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (457)
T TIGR01622 242 KEALEVMNGFEL----AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGS 317 (457)
T ss_pred HHHHHhcCCcEE----CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccc
Confidence 999999999777 4788999884311000
Q ss_pred -----------------Cc------------------c--ccccceeeeecCCCCCCC----------HHHHHHhhcccC
Q 006370 321 -----------------DP------------------E--IMAHVKTVFLDGVPPHWK----------ENQIRDQIKGYG 353 (648)
Q Consensus 321 -----------------~~------------------~--~~~~~~~l~v~nLp~~~t----------~~~l~~~f~~~G 353 (648)
.+ . .....++|+|.||....+ .++|++.|++||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G 397 (457)
T TIGR01622 318 KIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG 397 (457)
T ss_pred hhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC
Confidence 00 0 112346788899955433 368999999999
Q ss_pred cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 354 ~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.|+.|.|... ...|++||+|.++++|.+|+..|||+.|+|+.|.|.+..
T Consensus 398 ~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 398 GVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred CeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999643 367999999999999999999999999999999998754
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.9e-34 Score=311.97 Aligned_cols=240 Identities=21% Similarity=0.221 Sum_probs=201.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc--CCCeEeeeccCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCGTAP 226 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--~~~~l~G~~i~v~~ 226 (648)
++++|||+|||+++|+++|+++|++||.|..|.|+++ +++|||+|.+.++|.+||+.| ++..|.|+.|.|..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999853 689999999999999999864 67899999988864
Q ss_pred CCC------------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHH
Q 006370 227 SED------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (648)
Q Consensus 227 ~~~------------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A 288 (648)
+.. ..+|+|.||+..+|+++|+++|+.||. |..|.|+++. .+++|||+|.+.++|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~--V~~v~i~~~~-----~~~~afVef~~~~~A 147 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK--VLRIVTFTKN-----NVFQALVEFESVNSA 147 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC--EEEEEEEecC-----CceEEEEEECCHHHH
Confidence 421 126899999999999999999999999 9999998762 247899999999999
Q ss_pred HHHHHHhCCCCeeeCCCCcceeeeccCCCCC--------------------CC-----------c---------------
Q 006370 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLRE--------------------PD-----------P--------------- 322 (648)
Q Consensus 289 ~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~--------------------~~-----------~--------------- 322 (648)
.+|++.||+..+..+ .+.|+|.|+.+..- .. +
T Consensus 148 ~~A~~~Lng~~i~~~--~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 225 (481)
T TIGR01649 148 QHAKAALNGADIYNG--CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGY 225 (481)
T ss_pred HHHHHHhcCCcccCC--ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccc
Confidence 999999999988532 24566666543110 00 0
Q ss_pred --------------------------------------------cccccceeeeecCCCC-CCCHHHHHHhhcccCcEEE
Q 006370 323 --------------------------------------------EIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIR 357 (648)
Q Consensus 323 --------------------------------------------~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~ 357 (648)
......++|||+||++ .+|+++|+++|+.||.|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~ 305 (481)
T TIGR01649 226 SSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER 305 (481)
T ss_pred ccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE
Confidence 0011346999999998 6999999999999999999
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 358 v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
|+|+++ .+|||||+|.+.++|..||..|||..|.|+.|+|.++...
T Consensus 306 vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 306 VKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 999887 3699999999999999999999999999999999876543
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.8e-33 Score=313.58 Aligned_cols=245 Identities=21% Similarity=0.363 Sum_probs=202.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERI------------GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~------------G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (648)
....++|||+|||+.+|+++|++||.++ +.|..|.+ +..+|||||+|.+.++|.+||+ |++
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4467899999999999999999999975 23444444 4568999999999999999995 999
Q ss_pred CeEeeeccCCCCC-----------------------------------CCCCcceecccCCCCcHHHHHHHHhhcCCcce
Q 006370 215 PVICGKRCGTAPS-----------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGV 259 (648)
Q Consensus 215 ~~l~G~~i~v~~~-----------------------------------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i 259 (648)
..|.|+.|.|... ...++|||+|||..+|+++|+++|+.||. |
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i 322 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD--L 322 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--e
Confidence 9999988876421 12368999999999999999999999998 9
Q ss_pred EEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCc---------------c-
Q 006370 260 ENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---------------E- 323 (648)
Q Consensus 260 ~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~---------------~- 323 (648)
..+.|+.+. .++.++|||||+|.+.++|..|+..|++..+ .++.|.|.++........ .
T Consensus 323 ~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~----~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 323 KAFNLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGKDT----GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred eEEEEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEECccCCCCCCccccccccccccccccc
Confidence 999999884 4899999999999999999999999999988 478888888743221100 0
Q ss_pred -------ccccceeeeecCCCCC--C--------CHHHHHHhhcccCcEEEEEEeecC---CCCCcccEEEEEeCCHHHH
Q 006370 324 -------IMAHVKTVFLDGVPPH--W--------KENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 324 -------~~~~~~~l~v~nLp~~--~--------t~~~l~~~f~~~G~v~~v~i~~d~---~~~~~~G~afV~F~~~~~A 383 (648)
....+++|+|.||... + ..++|+++|++||.|+.|.|++.. .++...|+|||+|.+.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 0123578899999642 1 236899999999999999998753 3456689999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEE
Q 006370 384 VACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
++||.+|||..|.|+.|.|.+.
T Consensus 478 ~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 478 EKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred HHHHHHcCCCEECCeEEEEEEe
Confidence 9999999999999999988874
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.8e-33 Score=307.19 Aligned_cols=239 Identities=17% Similarity=0.260 Sum_probs=197.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee---------
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK--------- 220 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~--------- 220 (648)
-.+|||.||++.+|+++|+++|+.||.|+.|.|+++. .+++|||+|.+.++|.+|++.||+..|.+.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 3589999999999999999999999999999998763 246899999999999999999999988542
Q ss_pred ---ccCCC----C-------------------------------------------------------------------
Q 006370 221 ---RCGTA----P------------------------------------------------------------------- 226 (648)
Q Consensus 221 ---~i~v~----~------------------------------------------------------------------- 226 (648)
.|.|. .
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 11110 0
Q ss_pred --------------------CCCCCcceecccCC-CCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCH
Q 006370 227 --------------------SEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (648)
Q Consensus 227 --------------------~~~~~~L~V~nLp~-~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~ 285 (648)
....++|||+||+. .+|+++|+++|+.||. |..|+|+.+ .+|+|||+|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~--V~~vki~~~------~~g~afV~f~~~ 323 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN--VERVKFMKN------KKETALIEMADP 323 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC--eEEEEEEeC------CCCEEEEEECCH
Confidence 01346899999998 6999999999999999 999999986 359999999999
Q ss_pred HHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCc--------------------------------cccccceeeee
Q 006370 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--------------------------------EIMAHVKTVFL 333 (648)
Q Consensus 286 ~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~--------------------------------~~~~~~~~l~v 333 (648)
++|..|+..|++..+ .++.|+|.++.......+ .....+++|||
T Consensus 324 ~~A~~Ai~~lng~~l----~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 324 YQAQLALTHLNGVKL----FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred HHHHHHHHHhCCCEE----CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 999999999999988 489999988754211000 00123568999
Q ss_pred cCCCCCCCHHHHHHhhcccCc--EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe------eEEEEE
Q 006370 334 DGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN------SKVKLR 405 (648)
Q Consensus 334 ~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~------i~v~~~ 405 (648)
+|||..+|+++|+++|+.||. |+.|+|.... + .++++|||+|.+.++|.+||..||+..|.++. |+|.++
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999999998 8888886553 2 25889999999999999999999999999985 666665
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 478 ~ 478 (481)
T TIGR01649 478 T 478 (481)
T ss_pred c
Confidence 3
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.4e-34 Score=283.41 Aligned_cols=259 Identities=27% Similarity=0.481 Sum_probs=226.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCC-eEeee--ccCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGK--RCGTA 225 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~-~l~G~--~i~v~ 225 (648)
+.-.|||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|++. .|-|- +|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3457999999999999999999999999999999999999999999999999999999999999875 34443 45555
Q ss_pred CCC-------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 006370 226 PSE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (648)
Q Consensus 226 ~~~-------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~ 298 (648)
++. ..++|||+.|++.+|+.+|+++|++||. |++|.|+++. .+.+||+|||+|.+.+.|..|++.||+.
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~--Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH--IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc--cchhhheecc--cccccceeEEEEehHHHHHHHHHhhccc
Confidence 443 3678999999999999999999999999 9999999985 8999999999999999999999999999
Q ss_pred CeeeCCCCcceeeeccCCCCCCCc--------------------------------------------------------
Q 006370 299 DVVFGHPERTVKVAFAEPLREPDP-------------------------------------------------------- 322 (648)
Q Consensus 299 ~~~~g~~~~~l~v~~a~~~~~~~~-------------------------------------------------------- 322 (648)
..+.|+ ..+|-|.|+++++.+..
T Consensus 189 ~tmeGc-s~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~ 267 (510)
T KOG0144|consen 189 QTMEGC-SQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLG 267 (510)
T ss_pred eeeccC-CCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCC
Confidence 998886 68888999811110000
Q ss_pred --------------------------------------------------------------------------------
Q 006370 323 -------------------------------------------------------------------------------- 322 (648)
Q Consensus 323 -------------------------------------------------------------------------------- 322 (648)
T Consensus 268 ~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~ 347 (510)
T KOG0144|consen 268 PLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNL 347 (510)
T ss_pred CcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccc
Confidence
Q ss_pred -----------------------------------------------------------------------cccccceee
Q 006370 323 -----------------------------------------------------------------------EIMAHVKTV 331 (648)
Q Consensus 323 -----------------------------------------------------------------------~~~~~~~~l 331 (648)
........|
T Consensus 348 ~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanl 427 (510)
T KOG0144|consen 348 AGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANL 427 (510)
T ss_pred ccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccce
Confidence 000001469
Q ss_pred eecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeecCCC
Q 006370 332 FLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411 (648)
Q Consensus 332 ~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (648)
||.+||.+.-+.+|...|..||.|+..+|..|+.|+-+++|+||.|++..+|..||..|||..|+.++++|.+++....+
T Consensus 428 fiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 428 FIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred eeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766554
Q ss_pred C
Q 006370 412 M 412 (648)
Q Consensus 412 ~ 412 (648)
.
T Consensus 508 ~ 508 (510)
T KOG0144|consen 508 Y 508 (510)
T ss_pred C
Confidence 3
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-32 Score=257.68 Aligned_cols=227 Identities=20% Similarity=0.394 Sum_probs=188.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...+||||+||..++||+-|..||.+.|.|+.|+|+.+.. + +..|..- +.+-+. .+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------v~wa~~p-------~nQsk~-t~ 59 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------VNWATAP-------GNQSKP-TS 59 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------cccccCc-------ccCCCC-cc
Confidence 3568999999999999999999999999999999987710 0 0001100 110000 01
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
...-.+||+.|...++.+.|++.|.+||+ |.+++|++|. .++++|||+||.|-..++|+.||..|++.-+ ..|
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGe--vS~akvirD~-~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl----G~R 132 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGE--VSDAKVIRDM-NTGKSKGYGFVSFPNKEDAENAIQQMNGQWL----GRR 132 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccc--cccceEeecc-cCCcccceeEEeccchHHHHHHHHHhCCeee----ccc
Confidence 11346899999999999999999999999 9999999996 5999999999999999999999999999988 489
Q ss_pred ceeeeccCCCCCCCc-----------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEE
Q 006370 308 TVKVAFAEPLREPDP-----------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (648)
Q Consensus 308 ~l~v~~a~~~~~~~~-----------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~ 376 (648)
.|+..|+..+..... +.....++|||+||+..+|++.|++.|++||.|.+|+|.++ +||+||.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 999999976642111 12234689999999999999999999999999999999988 7899999
Q ss_pred eCCHHHHHHHHHHhCCCeecCCeeEEEEEeecCCC
Q 006370 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARLSNP 411 (648)
Q Consensus 377 F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (648)
|+++++|..||..||+..|.|..|+|.|-+.....
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999999999997655433
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=296.13 Aligned_cols=200 Identities=24% Similarity=0.381 Sum_probs=152.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc-----CC-CeEee
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-----KN-PVICG 219 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l-----~~-~~l~G 219 (648)
.+....||||+|||+++|+++|.++|++||+|.++.|+.++.|++++|+|||.|.+..+|+.||... .+ .+|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 4456799999999999999999999999999999999999999999999999999999999999976 23 67889
Q ss_pred eccCCCCCCC-------------------------------------------------------------------CCc
Q 006370 220 KRCGTAPSED-------------------------------------------------------------------NDT 232 (648)
Q Consensus 220 ~~i~v~~~~~-------------------------------------------------------------------~~~ 232 (648)
+.|.|..+.. .++
T Consensus 368 R~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtR 447 (678)
T KOG0127|consen 368 RLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTR 447 (678)
T ss_pred cEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhh
Confidence 8887754421 457
Q ss_pred ceecccCCCCcHHHHHHHHhhc----CCcceEEEEEeecccC--CCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 233 LFVGNICNTWTKEAIKQKLKDY----GVEGVENINLVSDIQH--EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 233 L~V~nLp~~~t~e~l~~~f~~~----G~~~i~~i~i~~d~~~--~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
|.|.|||..+....|..++-.. -...+..|+.+..... .+.+.||+||.|..++.|.+|++.+ +..
T Consensus 448 L~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~-G~l------- 519 (678)
T KOG0127|consen 448 LVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL-GVL------- 519 (678)
T ss_pred hhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc-ccc-------
Confidence 8889999999999998887643 1112333444443221 4678899999999999999998754 110
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
+...|.+ .|..+ ..+.++|++|++|..+.-|..+
T Consensus 520 kq~~Vef----------------------------------------ev~~~------k~~~sk~q~f~q~~~hK~a~~e 553 (678)
T KOG0127|consen 520 KQAKVEF----------------------------------------EVDGV------KAGRSKGQGFQQFEKHKRALME 553 (678)
T ss_pred ccceEEE----------------------------------------Eeccc------hhhhhhhhhHHHHHhhhhhhcc
Confidence 1111111 01111 2477899999999999999998
Q ss_pred HHHhCCCeecCCe
Q 006370 387 INAINNKEFSDGN 399 (648)
Q Consensus 387 i~~lng~~~~g~~ 399 (648)
+.+||.+.+....
T Consensus 554 ~r~~~pr~~t~~~ 566 (678)
T KOG0127|consen 554 LRWLNPRKETAAR 566 (678)
T ss_pred cccCCCccchHHH
Confidence 8888887766544
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.5e-32 Score=293.59 Aligned_cols=163 Identities=16% Similarity=0.365 Sum_probs=147.8
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
+.....++|||+||++++|+++|+++|++||+|.+|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.|+.|.|
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC-----------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHH
Q 006370 225 APSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (648)
Q Consensus 225 ~~~~-----------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~ 287 (648)
.... ..++|||+||+.++++++|+++|+.||. |..++|++++ .+++++|||||+|.+.++
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~--I~svrl~~D~-~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC--eeEEEEEecC-CCCCcCCeEEEEECCHHH
Confidence 5432 2368999999999999999999999999 9999999985 478899999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCcceeeecc
Q 006370 288 AMAAYKRLQKPDVVFGHPERTVKVAFA 314 (648)
Q Consensus 288 A~~A~~~l~~~~~~~g~~~~~l~v~~a 314 (648)
|.+|+..||+..+ .++.|+|.++
T Consensus 259 A~kAI~amNg~el----gGr~LrV~kA 281 (612)
T TIGR01645 259 QSEAIASMNLFDL----GGQYLRVGKC 281 (612)
T ss_pred HHHHHHHhCCCee----CCeEEEEEec
Confidence 9999999998876 3666766554
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.7e-30 Score=268.16 Aligned_cols=169 Identities=22% Similarity=0.402 Sum_probs=151.1
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
....++|||+|||+++|+++|+++|+.||. |+.|+|+.+. .+++++|||||+|.+.++|.+|++.|++..+ .+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~--V~~v~i~~d~-~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l----~g 176 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGP--INTCRIMRDY-KTGYSFGYAFVDFGSEADSQRAIKNLNGITV----RN 176 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecC-CCCccCcEEEEEEccHHHHHHHHHHcCCCcc----CC
Confidence 345789999999999999999999999999 9999999985 4899999999999999999999999999888 48
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
+.|+|.++.+.... ...++|||+|||..+|+++|+++|++||.|+.|.|++++.+++++|||||+|.+.++|++|
T Consensus 177 r~i~V~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 177 KRLKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred ceeeeecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 99999998764322 2346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEee
Q 006370 387 INAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~ 407 (648)
|+.||+..|.+..+.|.+.++
T Consensus 252 i~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred HHHhCCCccCCCceeEEEEEC
Confidence 999999999886544444443
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3e-30 Score=268.93 Aligned_cols=242 Identities=21% Similarity=0.418 Sum_probs=213.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC-----
Q 006370 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS----- 227 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~----- 227 (648)
|||.||+.+++..+|.++|+.||.|++|++.++. .| ++|| ||+|.++++|.+|++.+|+..+.+++|.|...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999985 35 9999 99999999999999999999999999877433
Q ss_pred ---------CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 006370 228 ---------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (648)
Q Consensus 228 ---------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~ 298 (648)
..-+.++|.+++.+++...|.++|..+|. |..+.++.+. .+++++|+||.|.+.++|..|+..|++.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~--i~s~~v~~~~--~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS--ITSVAVMRDS--IGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCc--ceEEEEeecC--CCCCCCccceeecChhHHHHHHHhccCC
Confidence 22567899999999999999999999999 9999999974 7779999999999999999999999998
Q ss_pred CeeeCCCCcceeeeccCCCCCCC-------------ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCC
Q 006370 299 DVVFGHPERTVKVAFAEPLREPD-------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (648)
Q Consensus 299 ~~~~g~~~~~l~v~~a~~~~~~~-------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~ 365 (648)
.+ .+..+.|..+....... .........|||.||+..++.+.|+.+|+.||.|+.++|+.+ .
T Consensus 232 ~~----~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~ 306 (369)
T KOG0123|consen 232 IF----GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-E 306 (369)
T ss_pred cC----CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec-c
Confidence 87 35666666665432211 112334568999999999999999999999999999999988 5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 366 ~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+.++||+||+|.+.++|..|+..+|+..+.++.+.|.+..
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 68899999999999999999999999999999998777654
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.4e-29 Score=258.56 Aligned_cols=238 Identities=24% Similarity=0.445 Sum_probs=213.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC-
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~- 229 (648)
.+|||+ +++|+..|.++|+.+|+|++|++|+|. | +.|||||.|.+.++|.+||.++|...|.|++|+++++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999997 6 999999999999999999999999999999999998864
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l 309 (648)
...|||.||+.+++...|.++|+.||. |..|+++.+. .| ++|| ||+|.+.+.|.+|+..+|+..+ .++.|
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~--ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll----~~kki 145 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN--ILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLL----NGKKI 145 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC--eeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCccc----CCCee
Confidence 455899999999999999999999999 9999999984 44 9999 9999999999999999999988 48888
Q ss_pred eeeccCCCCCCCc---cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 310 KVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 310 ~v~~a~~~~~~~~---~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
.|........... ......+.++|.|++..++.+.|..+|..+|.|..+.|+.+. .+++++|+||.|.++++|..|
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHH
Confidence 8877765443221 133456789999999999999999999999999999999984 566999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEE
Q 006370 387 INAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~~ 405 (648)
+..||+..+.+..+.|.-+
T Consensus 225 v~~l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRA 243 (369)
T ss_pred HHhccCCcCCccceeeccc
Confidence 9999999999887666543
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=3.6e-28 Score=252.34 Aligned_cols=166 Identities=24% Similarity=0.396 Sum_probs=151.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||+|++|+|++++.|++++|||||+|.+.++|.+||+.|++..|.+++|+|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 227 SE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 227 ~~------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
+. ..++|||+|||..+|+++|+++|++||. |..|+|+++. .++++++||||+|.+.++|++||+.|++..+
T Consensus 184 a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~--V~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 184 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ--IVQKNILRDK-LTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ccccccccccceeEEeCCCCcccHHHHHHHHHhcCC--EEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 53 3678999999999999999999999999 9999999884 5899999999999999999999999999876
Q ss_pred eeCCCCcceeeeccCCC
Q 006370 301 VFGHPERTVKVAFAEPL 317 (648)
Q Consensus 301 ~~g~~~~~l~v~~a~~~ 317 (648)
.. ..+.|+|.++...
T Consensus 261 ~g--~~~~l~V~~a~~~ 275 (346)
T TIGR01659 261 EG--GSQPLTVRLAEEH 275 (346)
T ss_pred CC--CceeEEEEECCcc
Confidence 32 2467888887754
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=4.5e-26 Score=242.17 Aligned_cols=161 Identities=21% Similarity=0.412 Sum_probs=142.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee--ccCCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK--RCGTAPSE 228 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~--~i~v~~~~ 228 (648)
++|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|..||+.||+..+.|. +|.|..+.
T Consensus 90 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 90 ANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred ceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 3799999999999999999999999999999999988899999999999999999999999999877663 22221110
Q ss_pred --------------------------------------------------------------------------------
Q 006370 229 -------------------------------------------------------------------------------- 228 (648)
Q Consensus 229 -------------------------------------------------------------------------------- 228 (648)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T TIGR01661 170 NPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPAT 249 (352)
T ss_pred CCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccc
Confidence
Q ss_pred ------------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHH
Q 006370 229 ------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290 (648)
Q Consensus 229 ------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~ 290 (648)
...+|||+|||..+++++|+++|++||. |.+++|+.+. .++.++|||||+|.+.++|.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~--v~~v~i~~d~-~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 250 DGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGA--VQNVKIIRDL-TTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCC--eEEEEEeEcC-CCCCccceEEEEECCHHHHHH
Confidence 0125999999999999999999999999 9999999985 489999999999999999999
Q ss_pred HHHHhCCCCeeeCCCCcceeeeccCCCC
Q 006370 291 AYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (648)
Q Consensus 291 A~~~l~~~~~~~g~~~~~l~v~~a~~~~ 318 (648)
|+..||+..+ .++.|+|.|...+.
T Consensus 327 Ai~~lnG~~~----~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTL----GNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEE----CCeEEEEEEccCCC
Confidence 9999999988 59999999987653
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.5e-25 Score=243.96 Aligned_cols=171 Identities=22% Similarity=0.425 Sum_probs=151.6
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l 309 (648)
.++|||+||++.+++++|+++|.+||. |..|.|+.++ .+++++|||||+|.+.++|.+|++.||+..+ .++.|
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~--I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i----~GR~I 179 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNI 179 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC--EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE----eccee
Confidence 468999999999999999999999999 9999999985 4899999999999999999999999999887 48999
Q ss_pred eeeccCCCCCCCc------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 310 KVAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 310 ~v~~a~~~~~~~~------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
+|.+........+ ......++|||+||+..+++++|+++|+.||.|+.|.|+++..+++++|||||+|.+.++|
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 9986543221111 1122357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEEee
Q 006370 384 VACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.+||..||+..|+|+.|+|.+++.
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999999988876654
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=8.2e-26 Score=239.26 Aligned_cols=248 Identities=20% Similarity=0.291 Sum_probs=202.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC-
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS- 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~- 227 (648)
....|+|+|||..+..++|..+|..||.|..|.|... | -.|+|+|.+..+|.+|+..|....+...++.+.++
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 4588999999999999999999999999999966421 1 24999999999999999998765443322211000
Q ss_pred -------------------------------------------------------CCCCcceecccCCCCcHHHHHHHHh
Q 006370 228 -------------------------------------------------------EDNDTLFVGNICNTWTKEAIKQKLK 252 (648)
Q Consensus 228 -------------------------------------------------------~~~~~L~V~nLp~~~t~e~l~~~f~ 252 (648)
...++|||.||++.+|.+.|..+|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 0023499999999999999999999
Q ss_pred hcCCcceEEEEEeecccC--CCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCC----ccccc
Q 006370 253 DYGVEGVENINLVSDIQH--EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD----PEIMA 326 (648)
Q Consensus 253 ~~G~~~i~~i~i~~d~~~--~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~----~~~~~ 326 (648)
..|. |..|.|...+.. .-.|.|||||+|.+.++|+.|++.|+++.+ .++.|.+.++....... .....
T Consensus 538 k~G~--VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl----dGH~l~lk~S~~k~~~~~gK~~~~kk 611 (725)
T KOG0110|consen 538 KQGT--VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL----DGHKLELKISENKPASTVGKKKSKKK 611 (725)
T ss_pred hcCe--EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee----cCceEEEEeccCcccccccccccccc
Confidence 9998 888877655322 345779999999999999999999999988 69999999987221111 11112
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..+.|.|+|||+.++..+|+.+|..||.|..|+|+.....+.++|||||+|-++.+|.+|+.+|..+++.|+.+.++|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 25799999999999999999999999999999999886677789999999999999999999999999999999999976
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
.-
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 43
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4e-25 Score=215.66 Aligned_cols=254 Identities=17% Similarity=0.359 Sum_probs=206.8
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
++...--|+|||+.|.+.+.|+.|+..|..||+|++|.+..|+.|++++|||||+|.-.|.|+.|++.||+.++.|+.|+
T Consensus 107 qqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiK 186 (544)
T KOG0124|consen 107 QQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 186 (544)
T ss_pred HHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccc
Confidence 34445679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHH
Q 006370 224 TAPSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (648)
Q Consensus 224 v~~~~-----------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~ 286 (648)
|.... .-++|||..+..+.++++|+.+|+.||+ |..|.+.+.+ ..+..+||+||+|.+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~--I~~C~LAr~p-t~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc--eeeEEeeccC-CCCCccceeeEEecccc
Confidence 86543 2578999999999999999999999999 9999999986 36788999999999999
Q ss_pred HHHHHHHHhCCCCeeeCCCCcceeeecc----------------------------------------------------
Q 006370 287 DAMAAYKRLQKPDVVFGHPERTVKVAFA---------------------------------------------------- 314 (648)
Q Consensus 287 ~A~~A~~~l~~~~~~~g~~~~~l~v~~a---------------------------------------------------- 314 (648)
+...|+..||-.++ .+..|+|..+
T Consensus 264 s~~eAiasMNlFDL----GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~v 339 (544)
T KOG0124|consen 264 SQSEAIASMNLFDL----GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLV 339 (544)
T ss_pred chHHHhhhcchhhc----ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCcccc
Confidence 99999999886555 2455554433
Q ss_pred -----------------------------CCCC------------------------------CCC-----c--------
Q 006370 315 -----------------------------EPLR------------------------------EPD-----P-------- 322 (648)
Q Consensus 315 -----------------------------~~~~------------------------------~~~-----~-------- 322 (648)
.|.. ... +
T Consensus 340 SpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L 419 (544)
T KOG0124|consen 340 SPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEML 419 (544)
T ss_pred CccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHh
Confidence 0000 000 0
Q ss_pred ---c------------------ccccceeeeecCC--CCCCC---HHHHHHhhcccCcEEEEEEeecCCCCCc----ccE
Q 006370 323 ---E------------------IMAHVKTVFLDGV--PPHWK---ENQIRDQIKGYGDVIRIVLARNMSTAKR----KDY 372 (648)
Q Consensus 323 ---~------------------~~~~~~~l~v~nL--p~~~t---~~~l~~~f~~~G~v~~v~i~~d~~~~~~----~G~ 372 (648)
+ ....++.+.++|+ |.+++ +.+|.+.|.+||.|..|.|...+.++.- ---
T Consensus 420 ~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVK 499 (544)
T KOG0124|consen 420 SEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVK 499 (544)
T ss_pred hhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhhe
Confidence 0 0012356777887 44444 4689999999999999999776544321 224
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 373 GFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 373 afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
.||+|....++.+|+.+|+|+.|.|+.+..++
T Consensus 500 IFVefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 500 IFVEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred eeeeechhhHHHHHHHhhccceecCceeehhh
Confidence 69999999999999999999999999866553
No 24
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=217.09 Aligned_cols=145 Identities=26% Similarity=0.452 Sum_probs=128.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~-~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..+.+||.|||+++.+.+|+++|. +.|+|+.|.|+.| .+|+++|||.|+|++.|.++||++.||...+.|++|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 446799999999999999999997 4899999999999 67999999999999999999999999999999998876432
Q ss_pred CC------------------------------------------------------------------------------
Q 006370 228 ED------------------------------------------------------------------------------ 229 (648)
Q Consensus 228 ~~------------------------------------------------------------------------------ 229 (648)
.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 11
Q ss_pred -------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 006370 230 -------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (648)
Q Consensus 230 -------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~ 296 (648)
..++||.||...+....|++.|.-.|. |+.|.+-.++ .+.++||+.++|...-.|..||..|+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk--v~~vdf~idK--eG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK--VQSVDFSIDK--EGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee--eeeeceeecc--ccccCCeeEEEecchHHHHHHHHhhc
Confidence 457899999999999999999999998 8888887775 67999999999999999999999888
Q ss_pred CC
Q 006370 297 KP 298 (648)
Q Consensus 297 ~~ 298 (648)
..
T Consensus 278 ~~ 279 (608)
T KOG4212|consen 278 RQ 279 (608)
T ss_pred cC
Confidence 53
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=2.2e-25 Score=230.26 Aligned_cols=247 Identities=21% Similarity=0.362 Sum_probs=204.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....+|||+-.|+..+++-+|.+||+.+|+|..|+|+.|+.+++++|.|||+|.+.+++..||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3467899999999999999999999999999999999999999999999999999999999996 899999999988765
Q ss_pred CCC--------------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHH
Q 006370 227 SED--------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (648)
Q Consensus 227 ~~~--------------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~ 286 (648)
+.. -..|+|+||.+++|++.|+..|+.||. |..|.++.+. .+|+++||+||+|.+.+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~--Ie~v~l~~d~-~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK--IENVQLTKDS-ETGRSKGFGFITFVNKE 331 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc--ceeeeecccc-ccccccCcceEEEecHH
Confidence 421 233899999999999999999999999 9999999984 48999999999999999
Q ss_pred HHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCC----------------------------------------------
Q 006370 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP---------------------------------------------- 320 (648)
Q Consensus 287 ~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~---------------------------------------------- 320 (648)
+|++|+..||+.++ .++.|+|.........
T Consensus 332 ~ar~a~e~lngfel----AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~ 407 (549)
T KOG0147|consen 332 DARKALEQLNGFEL----AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAIS 407 (549)
T ss_pred HHHHHHHHhcccee----cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhh
Confidence 99999999999665 4777776543100000
Q ss_pred ---------------------Ccccc-------ccceeeeecCCCC--CCC--------HHHHHHhhcccCcEEEEEEee
Q 006370 321 ---------------------DPEIM-------AHVKTVFLDGVPP--HWK--------ENQIRDQIKGYGDVIRIVLAR 362 (648)
Q Consensus 321 ---------------------~~~~~-------~~~~~l~v~nLp~--~~t--------~~~l~~~f~~~G~v~~v~i~~ 362 (648)
..... ..+.++.|.|+=. ..| .++|.+.|.+||.|..|.|..
T Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ 487 (549)
T KOG0147|consen 408 ALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK 487 (549)
T ss_pred HHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc
Confidence 00000 1234566666622 111 378999999999999998865
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 363 NMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 363 d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
+ +-|+.||.|.+.++|..|+.+|||..|.|+.|++.+-.
T Consensus 488 n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 488 N-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred C-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 5 45999999999999999999999999999999988743
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4e-24 Score=201.77 Aligned_cols=154 Identities=27% Similarity=0.566 Sum_probs=144.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC--
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS-- 227 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~-- 227 (648)
-.-|||+-|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..||+..|.+|.|+..++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999886543
Q ss_pred --------------------CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHH
Q 006370 228 --------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (648)
Q Consensus 228 --------------------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~ 287 (648)
.++++|||+||+..+|++.|+++|+.||. |.+|+++++ +||+||.|.+++.
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~--I~EVRvFk~-------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP--IQEVRVFKD-------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc--ceEEEEecc-------cceEEEEecchhh
Confidence 34789999999999999999999999999 999999998 4999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCcceeeeccCC
Q 006370 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEP 316 (648)
Q Consensus 288 A~~A~~~l~~~~~~~g~~~~~l~v~~a~~ 316 (648)
|..||-.+|++++ .+..++..|.+.
T Consensus 213 AahAIv~mNntei----~G~~VkCsWGKe 237 (321)
T KOG0148|consen 213 AAHAIVQMNNTEI----GGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHHhcCcee----CceEEEEecccc
Confidence 9999999999999 588888888654
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.6e-23 Score=228.82 Aligned_cols=173 Identities=20% Similarity=0.318 Sum_probs=150.9
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
....++|||+|||..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+||. |++..+ .+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~d~-~~~~skg~afVeF~~~e~A~~Al~-l~g~~~----~g 157 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGK--VRDVQCIKDR-NSRRSKGVAYVEFYDVESVIKALA-LTGQML----LG 157 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeecC-CCCCcceEEEEEECCHHHHHHHHH-hCCCEE----CC
Confidence 345679999999999999999999999998 9999999984 588999999999999999999996 788777 37
Q ss_pred cceeeeccCCCCCCCc-------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCC
Q 006370 307 RTVKVAFAEPLREPDP-------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~-------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~ 379 (648)
+.|.|.++........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred eeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 8888877643322111 111225789999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 380 HEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 380 ~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.++|.+||..|||..|.|+.|.|.++..
T Consensus 238 ~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 238 AEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999998763
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.1e-21 Score=195.36 Aligned_cols=162 Identities=20% Similarity=0.372 Sum_probs=140.5
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
...+.|||+.||.++.+++|..+|++.|+ |.+++||.++ .+|.+||||||+|++.+.|+.|++.||+.+|. .++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~--I~elRLMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir---~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGK--IYELRLMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR---PGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccc--eeeEEEeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc---CCC
Confidence 45788999999999999999999999999 9999999995 49999999999999999999999999999986 578
Q ss_pred ceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCc-EEEEEEeecC-CCCCcccEEEEEeCCHHHHHH
Q 006370 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNM-STAKRKDYGFIDFSTHEAAVA 385 (648)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~d~-~~~~~~G~afV~F~~~~~A~~ 385 (648)
.|.|..+.. .++|||+|||.++++++|.+.|++.+. |+.|.|.... ++.++||||||+|.++..|..
T Consensus 155 ~igvc~Sva-----------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~ 223 (506)
T KOG0117|consen 155 LLGVCVSVA-----------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAM 223 (506)
T ss_pred EeEEEEeee-----------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHH
Confidence 888776543 489999999999999999999999874 6666665443 357789999999999999999
Q ss_pred HHHHhCC--CeecCCeeEEEEEe
Q 006370 386 CINAINN--KEFSDGNSKVKLRA 406 (648)
Q Consensus 386 Ai~~lng--~~~~g~~i~v~~~~ 406 (648)
|..+|-. .++-|..+.|.|+-
T Consensus 224 aRrKl~~g~~klwgn~~tVdWAe 246 (506)
T KOG0117|consen 224 ARRKLMPGKIKLWGNAITVDWAE 246 (506)
T ss_pred HHhhccCCceeecCCcceeeccC
Confidence 9888743 35668888888754
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=5.9e-22 Score=215.95 Aligned_cols=189 Identities=21% Similarity=0.340 Sum_probs=150.7
Q ss_pred chhhHHHHHHhcCCCeEe--------eeccCC---CCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeeccc
Q 006370 201 NKEHAKRALTEMKNPVIC--------GKRCGT---APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ 269 (648)
Q Consensus 201 ~~e~A~~Al~~l~~~~l~--------G~~i~v---~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~ 269 (648)
..++|.+||..+++..|. |.++.+ ......++|||+|||.++++++|+++|+++|. |.+|+|+++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~--I~~vrl~~D-- 93 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP--IYELRLMMD-- 93 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC--EEEEEEEEC--
Confidence 467888888877665443 333222 11233589999999999999999999999999 999999998
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhh
Q 006370 270 HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQI 349 (648)
Q Consensus 270 ~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f 349 (648)
.+++++|||||+|.+.++|.+||+.|++..+. .++.|.|.++. ..++|||+|||..+|+++|.++|
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~---~Gr~l~V~~S~-----------~~~rLFVgNLP~~~TeeeL~eeF 159 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR---PGRLLGVCISV-----------DNCRLFVGGIPKNKKREEILEEF 159 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeec---CCccccccccc-----------cCceeEeecCCcchhhHHHHHHh
Confidence 48999999999999999999999999998874 34566665442 24789999999999999999999
Q ss_pred cccCc-EEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeecCCeeEEEEEee
Q 006370 350 KGYGD-VIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVKLRAR 407 (648)
Q Consensus 350 ~~~G~-v~~v~i~-~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng--~~~~g~~i~v~~~~~ 407 (648)
++++. |+.+.+. ....+++++|||||+|.++++|..|+.+|+. ..|.|+.|.|.|+..
T Consensus 160 skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p 221 (578)
T TIGR01648 160 SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEP 221 (578)
T ss_pred hcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecc
Confidence 99863 4444443 3334567899999999999999999998864 357899988887653
No 30
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.90 E-value=1.2e-21 Score=200.06 Aligned_cols=242 Identities=19% Similarity=0.265 Sum_probs=175.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
......|.+++|||.+|+++|.+||+.++ |+.+.+.+ .+|+..|-|||+|.+.+++++||++ +...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 44567899999999999999999999997 77766654 5799999999999999999999985 44444444444322
Q ss_pred C-----------------CCCCcceecccCCCCcHHHHHHHHhhcCCcceEE-EEEeecccCCCCcceEEEEEecCHHHH
Q 006370 227 S-----------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN-INLVSDIQHEGLSRGFAFVMFSCHVDA 288 (648)
Q Consensus 227 ~-----------------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~-i~i~~d~~~~g~srG~afV~f~~~~~A 288 (648)
+ .....|.|++||+.||+++|.++|+..-. +.. |.++.+. .+++.|-|||+|++.+.|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I--v~~gi~l~~d~--rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI--VPDGILLPMDQ--RGRPTGEAFVQFESQESA 158 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc--cccceeeeccC--CCCcccceEEEecCHHHH
Confidence 1 24567889999999999999999998764 444 5555553 788999999999999999
Q ss_pred HHHHHHhCCCCeeeCCCCcceeeecc-----------------------------------CCCC---------------
Q 006370 289 MAAYKRLQKPDVVFGHPERTVKVAFA-----------------------------------EPLR--------------- 318 (648)
Q Consensus 289 ~~A~~~l~~~~~~~g~~~~~l~v~~a-----------------------------------~~~~--------------- 318 (648)
++||.......- .+-|.|-.+ ....
T Consensus 159 e~Al~rhre~iG-----hRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~ 233 (510)
T KOG4211|consen 159 EIALGRHRENIG-----HRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGY 233 (510)
T ss_pred HHHHHHHHHhhc-----cceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCc
Confidence 999986442210 111111100 0000
Q ss_pred --------------------------CCC--c---------ccc-ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEE
Q 006370 319 --------------------------EPD--P---------EIM-AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (648)
Q Consensus 319 --------------------------~~~--~---------~~~-~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i 360 (648)
... + ... .....+..++||+..+..+|..+|+..-.+ .|.|
T Consensus 234 ~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i 312 (510)
T KOG4211|consen 234 YGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHI 312 (510)
T ss_pred cccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEE
Confidence 000 0 000 011578899999999999999999987443 4555
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 361 ~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
-.. .+++..|-|+|+|.|+++|..|+.+ ++..+..+-|.+.+
T Consensus 313 ~ig-~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 313 EIG-PDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred EeC-CCCccCCcceeecccchhhHhhhcc-CCcccCcceeeecc
Confidence 444 4688999999999999999999864 66777777655543
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.1e-23 Score=208.55 Aligned_cols=162 Identities=27% Similarity=0.457 Sum_probs=145.6
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
+.-+|||+.||..|++.+|+++|++||. |.+|.|++| +.++.++|+|||.|.+.++|.+|+..|++...+.| ...+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~--V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG-~~~p 108 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGN--VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG-MHHP 108 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCc--eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCC-CCcc
Confidence 3458999999999999999999999999 999999999 46999999999999999999999999999887766 4688
Q ss_pred eeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006370 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (648)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (648)
|.|.+++..++... ...+|||+-|+..+|+.+|+++|++||.|++|.|+++ ..+.+||||||+|.+.+.|..||+
T Consensus 109 vqvk~Ad~E~er~~----~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 109 VQVKYADGERERIV----EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eeecccchhhhccc----cchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHH
Confidence 99999987665542 3478999999999999999999999999999999999 468899999999999999999999
Q ss_pred HhCCCe-ecCCe
Q 006370 389 AINNKE-FSDGN 399 (648)
Q Consensus 389 ~lng~~-~~g~~ 399 (648)
+|||.. +.|..
T Consensus 184 a~ng~~tmeGcs 195 (510)
T KOG0144|consen 184 ALNGTQTMEGCS 195 (510)
T ss_pred hhccceeeccCC
Confidence 999875 55543
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=9.3e-22 Score=208.72 Aligned_cols=226 Identities=22% Similarity=0.351 Sum_probs=171.0
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.++.+..+|||+|||+.+|++||..+| |||.|...+.|.+|...+++..+.|+-|.|
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhv 278 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHV 278 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeee
Confidence 556678899999999999999999998 666666666666666666666666655543
Q ss_pred CCCC----------------------------------------------------------------------------
Q 006370 225 APSE---------------------------------------------------------------------------- 228 (648)
Q Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (648)
.+..
T Consensus 279 lp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~et 358 (725)
T KOG0110|consen 279 LPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGET 358 (725)
T ss_pred cCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHh
Confidence 2211
Q ss_pred -------------------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEec
Q 006370 229 -------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283 (648)
Q Consensus 229 -------------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~ 283 (648)
..+.|+|+|||..+..++|..+|..||. |..+.|.. .| .-++|+|.
T Consensus 359 r~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~--i~rvllp~----~G---~~aiv~fl 429 (725)
T KOG0110|consen 359 RVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE--IGRVLLPP----GG---TGAIVEFL 429 (725)
T ss_pred hhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc--cceeecCc----cc---ceeeeeec
Confidence 0356889999999999999999999998 98885432 11 24899999
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCC----------------C-------------------CC-----c-
Q 006370 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR----------------E-------------------PD-----P- 322 (648)
Q Consensus 284 ~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~----------------~-------------------~~-----~- 322 (648)
+..+|.+|++.|+.+.+. ..++.+.|+.... . .. +
T Consensus 430 ~p~eAr~Afrklaysr~k----~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~ 505 (725)
T KOG0110|consen 430 NPLEARKAFRKLAYSRFK----SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSL 505 (725)
T ss_pred CccchHHHHHHhchhhhc----cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccc
Confidence 999999999999877652 3333333331000 0 00 0
Q ss_pred ----cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCee
Q 006370 323 ----EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEF 395 (648)
Q Consensus 323 ----~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~---~~~~G~afV~F~~~~~A~~Ai~~lng~~~ 395 (648)
......++|||+||++.+|.++|..+|.+.|.|..|.|...+.. -.+.|||||+|.+.++|++|+..|+|+.|
T Consensus 506 a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl 585 (725)
T KOG0110|consen 506 ARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL 585 (725)
T ss_pred hhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee
Confidence 00011234999999999999999999999999999988755322 12559999999999999999999999999
Q ss_pred cCCeeEEEEEe
Q 006370 396 SDGNSKVKLRA 406 (648)
Q Consensus 396 ~g~~i~v~~~~ 406 (648)
.|+.|.|.++.
T Consensus 586 dGH~l~lk~S~ 596 (725)
T KOG0110|consen 586 DGHKLELKISE 596 (725)
T ss_pred cCceEEEEecc
Confidence 99999998875
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=4.7e-22 Score=186.34 Aligned_cols=166 Identities=22% Similarity=0.393 Sum_probs=151.0
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
...+++|+|.-||..+|.++|+.+|...|+ |+.|++++| +.+|.+-||+||.|.+..+|++|+..||+..+ +.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGe--iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL----Q~ 110 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGE--IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL----QN 110 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccc--eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee----cc
Confidence 345678999999999999999999999999 999999999 47999999999999999999999999999988 68
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
++|+|.++.|....- ....|||.+||..+|..+|.++|++||.|+..+|+.|..|+.++|.+||.|....+|+.|
T Consensus 111 KTIKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 111 KTIKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred ceEEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH
Confidence 999999998865433 346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEE
Q 006370 387 INAINNKEFSDGNSKVKL 404 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~ 404 (648)
|..|||..-.|..-.+++
T Consensus 186 Ik~lNG~~P~g~tepItV 203 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITV 203 (360)
T ss_pred HHhccCCCCCCCCCCeEE
Confidence 999999998886544443
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=3.8e-21 Score=214.59 Aligned_cols=171 Identities=20% Similarity=0.362 Sum_probs=137.4
Q ss_pred CCCCCCCcceecccCCCCcHHHHHHHHhhcCC----------cceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHH
Q 006370 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGV----------EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (648)
Q Consensus 225 ~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~----------~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~ 294 (648)
......++|||+|||..+|+++|+++|.+++. ..|..+.+ .+.+|||||+|.+.++|..|| .
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-c
Confidence 34455789999999999999999999998621 01333333 345799999999999999999 4
Q ss_pred hCCCCeeeCCCCcceeeeccCCCCC----------CC--------------ccccccceeeeecCCCCCCCHHHHHHhhc
Q 006370 295 LQKPDVVFGHPERTVKVAFAEPLRE----------PD--------------PEIMAHVKTVFLDGVPPHWKENQIRDQIK 350 (648)
Q Consensus 295 l~~~~~~~g~~~~~l~v~~a~~~~~----------~~--------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~ 350 (648)
|++..+ .++.|+|........ .. .......++|||+|||+.+|+++|+++|+
T Consensus 242 l~g~~~----~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 317 (509)
T TIGR01642 242 LDSIIY----SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE 317 (509)
T ss_pred CCCeEe----eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 888766 367777764321110 00 00122347899999999999999999999
Q ss_pred ccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 351 GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 351 ~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
+||.|..|.|+++..++.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 999999999999999999999999999999999999999999999999988887653
No 35
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=8.2e-22 Score=187.99 Aligned_cols=157 Identities=29% Similarity=0.528 Sum_probs=143.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC-
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~- 229 (648)
..|||+|||..+++.+|+.+|++||+|++|.|+++ |+||..+++..|..||..|++-.|+|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999976 899999999999999999999999999999987654
Q ss_pred ---CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 230 ---NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 230 ---~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
.++|+|+||.+.+|..+|+..|++||. |.++.|+++ |+||.|...++|..|++.|+++.+ .+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygp--viecdivkd---------y~fvh~d~~eda~~air~l~~~~~----~g 139 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGP--VIECDIVKD---------YAFVHFDRAEDAVEAIRGLDNTEF----QG 139 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCC--ceeeeeecc---------eeEEEEeeccchHHHHhccccccc----cc
Confidence 588999999999999999999999999 999999885 999999999999999999999999 69
Q ss_pred cceeeeccCCCCCCCcccccccee
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKT 330 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~ 330 (648)
+.++|+++.......+....+..+
T Consensus 140 k~m~vq~stsrlrtapgmgDq~~c 163 (346)
T KOG0109|consen 140 KRMHVQLSTSRLRTAPGMGDQSGC 163 (346)
T ss_pred ceeeeeeeccccccCCCCCCHHHh
Confidence 999999998876666655444433
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=1.1e-21 Score=175.30 Aligned_cols=164 Identities=21% Similarity=0.412 Sum_probs=147.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
...||||+||+..++++-|.++|-+.|+|+.++|.+|+.+...+|||||+|.+.|+|+-|++.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred -------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCee
Q 006370 229 -------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 301 (648)
Q Consensus 229 -------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~ 301 (648)
...+|||+||.+.+++..|...|+.||. -+..-.+++++ .++.+++|+||.|.+.+.+.+|+..+++..+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd~-~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRDP-DTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCcccccc-cCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 2568999999999999999999999996 13334788885 5899999999999999999999999999887
Q ss_pred eCCCCcceeeeccCCCC
Q 006370 302 FGHPERTVKVAFAEPLR 318 (648)
Q Consensus 302 ~g~~~~~l~v~~a~~~~ 318 (648)
.++.+.|.++..+.
T Consensus 165 ---~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 165 ---CNRPITVSYAFKKD 178 (203)
T ss_pred ---cCCceEEEEEEecC
Confidence 58888888876543
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=4.1e-21 Score=183.22 Aligned_cols=148 Identities=22% Similarity=0.435 Sum_probs=136.4
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
.+|||+|||..+++.+|+.+|++||+ |.+|.|+++ |+||..++...|..|+..|++-.+ .+..|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk--VlECDIvKN---------YgFVHiEdktaaedairNLhgYtL----hg~nIn 67 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK--VLECDIVKN---------YGFVHIEDKTAAEDAIRNLHGYTL----HGVNIN 67 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc--eEeeeeecc---------cceEEeecccccHHHHhhccccee----cceEEE
Confidence 37999999999999999999999999 999999985 999999999999999999999988 588888
Q ss_pred eeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006370 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (648)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (648)
|.-++.+. ..+++|+|+||.+.|+.++|+..|++||.|+.|+|+++ |+||.|.-.++|..||..|
T Consensus 68 VeaSksKs-------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 68 VEASKSKS-------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred EEeccccC-------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcc
Confidence 88777652 23579999999999999999999999999999999876 8999999999999999999
Q ss_pred CCCeecCCeeEEEEEeec
Q 006370 391 NNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 391 ng~~~~g~~i~v~~~~~~ 408 (648)
||++|.|+.++|.+....
T Consensus 133 ~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccccccceeeeeeeccc
Confidence 999999999999987654
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=8.2e-21 Score=169.75 Aligned_cols=170 Identities=23% Similarity=0.366 Sum_probs=150.6
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
....+|||+||+..++++-|.++|-+.|. |.++.+.++. .+...+|||||+|.+.++|.-|++-||...+. ++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDr-v~~~~qGygF~Ef~~eedadYAikiln~VkLY----gr 79 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDR-VTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GR 79 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhh-hcccccceeEEEEechhhhHHHHHHHHHHHhc----Cc
Confidence 34679999999999999999999999999 9999999994 47789999999999999999999999976664 89
Q ss_pred ceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
+|+|..+..... ......+|||+||.+.+++..|.+.|+.||.|.. -.|+++..||.++|||||.|.+.+.+.+|
T Consensus 80 pIrv~kas~~~~----nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 80 PIRVNKASAHQK----NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred eeEEEecccccc----cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 999998873222 2223479999999999999999999999998765 47889999999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEeec
Q 006370 387 INAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~~ 408 (648)
|..|||..+..+.|.|.++...
T Consensus 156 i~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHhccchhcCCceEEEEEEec
Confidence 9999999999999999887543
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=8.1e-21 Score=178.70 Aligned_cols=183 Identities=23% Similarity=0.420 Sum_probs=155.8
Q ss_pred eccCCCCCC------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHH
Q 006370 220 KRCGTAPSE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (648)
Q Consensus 220 ~~i~v~~~~------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~ 293 (648)
+.|.|+++. +.++|||+.|.+.-.+++++.+|..||. |++|.+.+.+ .|.+||+|||.|.+..+|..||.
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~--~~e~tvlrg~--dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGN--IEECTVLRGP--DGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCC--cceeEEecCC--CCCCCCceEEEeccchHHHHHHH
Confidence 455565543 4689999999999999999999999999 9999999985 89999999999999999999999
Q ss_pred HhCCCCeeeCCCCcceeeeccCCCCC------------------------------------------------------
Q 006370 294 RLQKPDVVFGHPERTVKVAFAEPLRE------------------------------------------------------ 319 (648)
Q Consensus 294 ~l~~~~~~~g~~~~~l~v~~a~~~~~------------------------------------------------------ 319 (648)
.|+++..+.|. ...|-|++++..++
T Consensus 79 aLHgSqTmpGA-SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 79 ALHGSQTMPGA-SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HhcccccCCCC-ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 99999888774 56677777600000
Q ss_pred -----------------------------------------------------------------------------CC-
Q 006370 320 -----------------------------------------------------------------------------PD- 321 (648)
Q Consensus 320 -----------------------------------------------------------------------------~~- 321 (648)
..
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 00
Q ss_pred -----------------------------------------ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEE
Q 006370 322 -----------------------------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (648)
Q Consensus 322 -----------------------------------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i 360 (648)
.......+.|||-.||.+..+.+|..+|-.||.|++.+|
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKV 317 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeee
Confidence 000012378999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 361 ~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
..|+.|+.+++|+||.|.++.+|++||.+|||..|+-++++|.++..
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 99999999999999999999999999999999999999988887643
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=1e-19 Score=183.14 Aligned_cols=196 Identities=24% Similarity=0.388 Sum_probs=156.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
+.++|||++|++++|++.|+++|.+||+|.+|.+++++.+++++||+||+|++.+.+.++|.. ..+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 689999999999999999999999999999999999999999999999999999999999974 5567888888776553
Q ss_pred C------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 006370 229 D------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (648)
Q Consensus 229 ~------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~ 296 (648)
. ..+|||++|+..+++++|++.|+++|. |..+.++.|. .+.+.+||+||+|.+.+.+.+++.. .
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~--v~~~~~~~d~-~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK--VADVVIMYDK-TTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce--eEeeEEeecc-cccccccceeeEeccccccceeccc-c
Confidence 3 348999999999999999999999998 9999999994 5889999999999999999988752 3
Q ss_pred CCCeeeCCCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccC
Q 006370 297 KPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG 353 (648)
Q Consensus 297 ~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G 353 (648)
-+.+ .++.+.|..|.|+....+............|+....+.-.|..+|.-|+
T Consensus 160 f~~~----~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~ 212 (311)
T KOG4205|consen 160 FHDF----NGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYG 212 (311)
T ss_pred eeee----cCceeeEeeccchhhccccccccccccccccccccccccccchhccccC
Confidence 3334 4888999999887665554332233333334443333333444444443
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=2.6e-18 Score=173.06 Aligned_cols=172 Identities=22% Similarity=0.408 Sum_probs=144.7
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
...+|||++|+|.++++.|+.+|.+||+ |.+|.+|+++. +++++||+||+|.+.+...+++.....+ + .++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Ge--v~d~~vm~d~~-t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~----dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGE--VTDCVVMRDPS-TGRSRGFGFVTFATPEGVDAVLNARTHK-L----DGRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCc--eeeEEEeccCC-CCCcccccceecCCCcchheeecccccc-c----CCcc
Confidence 5679999999999999999999999999 99999999964 7999999999999999888887643332 2 3677
Q ss_pred eeeeccCCCCCCCc-cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006370 309 VKVAFAEPLREPDP-EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (648)
Q Consensus 309 l~v~~a~~~~~~~~-~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai 387 (648)
|.+..+.+...... ......++|||++||..+++++|+++|.+||.|..+.|+.|..+.+++||+||+|.+++.+.+++
T Consensus 77 ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 77 VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 77776665443222 12225779999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhCCCeecCCeeEEEEEeecC
Q 006370 388 NAINNKEFSDGNSKVKLRARLS 409 (648)
Q Consensus 388 ~~lng~~~~g~~i~v~~~~~~~ 409 (648)
. ..-+.|.++.+.|..++...
T Consensus 157 ~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 157 L-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred c-cceeeecCceeeEeeccchh
Confidence 5 67889999887776655443
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=4.2e-19 Score=173.80 Aligned_cols=171 Identities=21% Similarity=0.412 Sum_probs=151.2
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
+++||+.|.+++.++.|+..|..||. |+.|.+-.|+ .+++.+|||||+|+-.+.|..|++.||+..+ .++.|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP--IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml----GGRNiK 186 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNIK 186 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC--cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccccc----cCcccc
Confidence 57999999999999999999999999 9999999996 5999999999999999999999999999877 489999
Q ss_pred eeccCCCCCCCcc------ccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 006370 311 VAFAEPLREPDPE------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (648)
Q Consensus 311 v~~a~~~~~~~~~------~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~ 384 (648)
|.......+..+- .....++|||..+..+++++||+..|+.||.|+.|.+.+...++..+||+||+|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 8865443332221 2234579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeecCCeeEEEEEeec
Q 006370 385 ACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 385 ~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
.||..||-..++|..++|--.+..
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HHhhhcchhhcccceEecccccCC
Confidence 999999999999998777655543
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.75 E-value=4.2e-17 Score=162.63 Aligned_cols=246 Identities=19% Similarity=0.274 Sum_probs=185.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC--CCeEeeeccCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGTA 225 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~G~~i~v~ 225 (648)
..++.|.|+|||+++||++|-.++.+||.|+.+.+.+. +..|||+|.+.++|...+.-.. ...+.+..|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 37889999999999999999999999999999988765 3379999999999988222110 011222222111
Q ss_pred CC--------------------------------------------CC--CCcceecccCCCCcHHHHHHHHhhcCCcce
Q 006370 226 PS--------------------------------------------ED--NDTLFVGNICNTWTKEAIKQKLKDYGVEGV 259 (648)
Q Consensus 226 ~~--------------------------------------------~~--~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i 259 (648)
.+ .+ --.++|.++-..+|-+-|..+|++||. |
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~--V 177 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF--V 177 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce--e
Confidence 00 00 124668999999999999999999998 8
Q ss_pred EEEEEeecccCCCCcceE-EEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCC------------------CC
Q 006370 260 ENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR------------------EP 320 (648)
Q Consensus 260 ~~i~i~~d~~~~g~srG~-afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~------------------~~ 320 (648)
..|..+.. +.+| |+|+|.+...|..|...|.+..|..+ -++|+++|+.-.. ..
T Consensus 178 lKIiTF~K------nn~FQALvQy~d~~sAq~AK~aLdGqnIyng--cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 178 LKIITFTK------NNGFQALVQYTDAVSAQAAKLALDGQNIYNG--CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred EEEEEEec------ccchhhhhhccchhhHHHHHHhccCCcccCc--eeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 87766543 2234 89999999999999999999998766 3677777661100 00
Q ss_pred C--------------------------------------ccccc--cceeeeecCCCC-CCCHHHHHHhhcccCcEEEEE
Q 006370 321 D--------------------------------------PEIMA--HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIV 359 (648)
Q Consensus 321 ~--------------------------------------~~~~~--~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~ 359 (648)
. ..... ....|.|.||.. .+|.+-|..+|.-||.|..|+
T Consensus 250 gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk 329 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK 329 (492)
T ss_pred CccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEE
Confidence 0 00000 135778888866 589999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeecCCCCCC
Q 006370 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPK 414 (648)
Q Consensus 360 i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~~~~ 414 (648)
|+.++. --|+|+|.+...|.-|++.|+|..+.|+.|+|.+.+-.....++
T Consensus 330 il~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 330 ILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPR 379 (492)
T ss_pred eeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCC
Confidence 998853 35999999999999999999999999999999988766655554
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=4.1e-17 Score=148.62 Aligned_cols=83 Identities=22% Similarity=0.438 Sum_probs=77.6
Q ss_pred cccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 643
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=4.2e-18 Score=176.62 Aligned_cols=175 Identities=18% Similarity=0.332 Sum_probs=149.0
Q ss_pred CCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006370 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (648)
Q Consensus 226 ~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~ 305 (648)
...+.+++|+-.|...++..+|.++|+.+|+ |..|+|+.+ +.+++++|.+||+|.+.+....|+ .|.+..++
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gk--VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---- 246 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGK--VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---- 246 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcC--cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCccc----
Confidence 3345688999999999999999999999999 999999999 468999999999999999999998 47887774
Q ss_pred CcceeeeccCCCCCCCc---------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEE
Q 006370 306 ERTVKVAFAEPLREPDP---------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (648)
Q Consensus 306 ~~~l~v~~a~~~~~~~~---------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~ 376 (648)
+.+|.|+.....+.... ....+..+|+|+||.+++|+++|+.+|+.||.|..|.++++..||.++||+||+
T Consensus 247 g~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 247 GVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred CceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 78888876543222110 011122349999999999999999999999999999999998899999999999
Q ss_pred eCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 377 F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
|.+.++|.+|++.|||..|.|+.|+|.+....
T Consensus 327 f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred EecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999999998875543
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.4e-16 Score=165.09 Aligned_cols=244 Identities=18% Similarity=0.332 Sum_probs=187.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERI-----------G-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~-----------G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (648)
....+.++|++||+.++++.+..+|..- | .|..|.|. ..+.+|||+|.+.+.|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccc
Confidence 3466889999999999999999999764 3 36666664 457899999999999999997 566
Q ss_pred CeEeeeccCCCC-----------------------------CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEe
Q 006370 215 PVICGKRCGTAP-----------------------------SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLV 265 (648)
Q Consensus 215 ~~l~G~~i~v~~-----------------------------~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~ 265 (648)
..+.|..+.+.. ....+++||++||...++.++++++..||. +....++
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~--lk~f~lv 322 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP--LKAFRLV 322 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc--chhheee
Confidence 666666544311 112578999999999999999999999999 9999999
Q ss_pred ecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCc-------------------cccc
Q 006370 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP-------------------EIMA 326 (648)
Q Consensus 266 ~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~-------------------~~~~ 326 (648)
.+. .++.++||||.+|.+......|+..||+..+. .+.|.|+.+-....... ....
T Consensus 323 ~d~-~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~ 397 (500)
T KOG0120|consen 323 KDS-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGI 397 (500)
T ss_pred ccc-ccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhhccchhccccCCccccccccchhhhcccCCC
Confidence 995 46899999999999999999999999999883 57777776633221110 0111
Q ss_pred cceeeeecCCCC--CCC--------HHHHHHhhcccCcEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 006370 327 HVKTVFLDGVPP--HWK--------ENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNK 393 (648)
Q Consensus 327 ~~~~l~v~nLp~--~~t--------~~~l~~~f~~~G~v~~v~i~~d~~---~~~~~G~afV~F~~~~~A~~Ai~~lng~ 393 (648)
.+..|.+.|+=. .+. -++|+..|.+||.|..|.|.+... -.-..|..||+|.+.+++++|+++|+|+
T Consensus 398 ~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 398 PTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred cchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 223444444411 111 156778889999999999988722 2345788999999999999999999999
Q ss_pred eecCCeeEEEE
Q 006370 394 EFSDGNSKVKL 404 (648)
Q Consensus 394 ~~~g~~i~v~~ 404 (648)
+|.++.|.+.+
T Consensus 478 KF~nRtVvtsY 488 (500)
T KOG0120|consen 478 KFANRTVVASY 488 (500)
T ss_pred eeCCcEEEEEe
Confidence 99999987765
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=9.4e-16 Score=137.29 Aligned_cols=164 Identities=21% Similarity=0.341 Sum_probs=136.1
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
...++|||+|||.++.+.+|.++|-+||. |..|.|...+ ..-.||||+|++..+|+.||..-++..+ .+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~--i~~ieLK~r~----g~ppfafVeFEd~RDAeDAiygRdGYdy----dg~ 73 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR--IREIELKNRP----GPPPFAFVEFEDPRDAEDAIYGRDGYDY----DGC 73 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc--eEEEEeccCC----CCCCeeEEEecCccchhhhhhccccccc----Ccc
Confidence 35678999999999999999999999999 9999986642 3457999999999999999999898888 689
Q ss_pred ceeeeccCCCCCCC---------------------ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCC
Q 006370 308 TVKVAFAEPLREPD---------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (648)
Q Consensus 308 ~l~v~~a~~~~~~~---------------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~ 366 (648)
.|+|.|+..-.... +.......+|.|.+||.+.+|++|+++..+.|.|-...+.+|
T Consensus 74 rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--- 150 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--- 150 (241)
T ss_pred eEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---
Confidence 99999985442111 111223468999999999999999999999999999999877
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 367 ~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
|.+.|+|...++.+-||.+|....+..-...+-+.+..
T Consensus 151 ----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 151 ----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 37999999999999999999988877655555555443
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.6e-16 Score=149.96 Aligned_cols=163 Identities=21% Similarity=0.409 Sum_probs=138.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCe-Eeee--ccCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGK--RCGTA 225 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~-l~G~--~i~v~ 225 (648)
+.+.|||+.|.+.-.|+|++.+|..||.|.+|.+.+.. .|.+||||||.|.+.-+|..||..|++.. +.|- .|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999874 58999999999999999999999998742 1110 00000
Q ss_pred CC------------------------------------------------------------------------------
Q 006370 226 PS------------------------------------------------------------------------------ 227 (648)
Q Consensus 226 ~~------------------------------------------------------------------------------ 227 (648)
.+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 006370 228 -------------------------------------------------------------------------------- 227 (648)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (648)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred --------------------------CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEE
Q 006370 228 --------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281 (648)
Q Consensus 228 --------------------------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~ 281 (648)
.+.++|||-.||.+.++.+|.+.|-.||. |...+++.| +.++.+|.|+||.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGh--ivSaKVFvD-RATNQSKCFGFVS 333 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGH--IVSAKVFVD-RATNQSKCFGFVS 333 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccc--eeeeeeeeh-hccccccceeeEe
Confidence 00578999999999999999999999999 999999888 4689999999999
Q ss_pred ecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCC
Q 006370 282 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (648)
Q Consensus 282 f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~ 319 (648)
|.+..+|+.||..||+-.| .-++|+|++..|+..
T Consensus 334 fDNp~SaQaAIqAMNGFQI----GMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQI----GMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhh----hhhhhhhhhcCcccc
Confidence 9999999999999999888 368888888776543
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.65 E-value=1.4e-14 Score=142.91 Aligned_cols=243 Identities=20% Similarity=0.231 Sum_probs=193.3
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc--CCCeEeeec
Q 006370 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKR 221 (648)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--~~~~l~G~~ 221 (648)
..+...+-.|.|++|-..++|.+|.+.++.||+|..|.++.. +..|.|+|.+.+.|..|+.-. +...+.|..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCch
Confidence 345667889999999999999999999999999999988644 557999999999999998642 333455554
Q ss_pred cCCCCC-------------CCCCcce--ecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHH
Q 006370 222 CGTAPS-------------EDNDTLF--VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (648)
Q Consensus 222 i~v~~~-------------~~~~~L~--V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~ 286 (648)
..+..+ ..++.|. |-|--..+|.+.|.++...+|. |..|.|++. ++ -.|.|+|.+.+
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk--VlRIvIfkk---ng---VQAmVEFdsv~ 170 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK--VLRIVIFKK---NG---VQAMVEFDSVE 170 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc--eEEEEEEec---cc---eeeEEeechhH
Confidence 433222 2234444 4455567999999999999999 999999885 22 46899999999
Q ss_pred HHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCC----------------------------------------------
Q 006370 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP---------------------------------------------- 320 (648)
Q Consensus 287 ~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~---------------------------------------------- 320 (648)
.|++|...||+.+|..| -++|+|.+|+|.+..
T Consensus 171 ~AqrAk~alNGADIYsG--CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~ 248 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSG--CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGG 248 (494)
T ss_pred HHHHHHhhccccccccc--ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCC
Confidence 99999999999999877 478888888443210
Q ss_pred -------------------------------CccccccceeeeecCCCC-CCCHHHHHHhhcccCcEEEEEEeecCCCCC
Q 006370 321 -------------------------------DPEIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAK 368 (648)
Q Consensus 321 -------------------------------~~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~ 368 (648)
.+........+.|-+|.. .++.+.|..+|..||.|..|++++.+
T Consensus 249 h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---- 324 (494)
T KOG1456|consen 249 HSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---- 324 (494)
T ss_pred CCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----
Confidence 001112345788999987 47889999999999999999999874
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 369 RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 369 ~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.|.|+|++.+..+.++|+..||+..+.|.+|.|.+++.
T Consensus 325 -~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 325 -PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred -cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 67899999999999999999999999999988877654
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.65 E-value=1.7e-14 Score=148.08 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=123.7
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
..|.+.+|||++|+++|.++|+.++ |+++.+.+. +|+..|-|||+|++.+++++|+++-.... ..+-|.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~m-----g~RYIE 79 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRESM-----GHRYIE 79 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHHh-----CCceEE
Confidence 4567899999999999999999998 899887775 79999999999999999999999643322 245555
Q ss_pred eeccCCCCC------CCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEE-EEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 311 VAFAEPLRE------PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 311 v~~a~~~~~------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
|-.+..... ..+........|.+++||+.||++||.+||+..-.|.. |.++.+ ..+++.|-|||+|++.+.|
T Consensus 80 Vf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 80 VFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHH
Confidence 544422211 11111134568999999999999999999998865555 334444 4577999999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEE
Q 006370 384 VACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~ 404 (648)
+.||.. |...|+.+-|.|.-
T Consensus 159 e~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 159 EIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred HHHHHH-HHHhhccceEEeeh
Confidence 999974 66678877777754
No 51
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=1e-15 Score=151.32 Aligned_cols=252 Identities=19% Similarity=0.219 Sum_probs=181.9
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
.........|..++|||..++.+|..||+-..-+.-.+.+.....|+..|.|.|.|.+.|.-..|++. +...+.++.|.
T Consensus 54 ~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryie 132 (508)
T KOG1365|consen 54 NHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIE 132 (508)
T ss_pred ccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCcee
Confidence 34455677888999999999999999998765443334444446788999999999999999999986 44455566555
Q ss_pred CCCC----------------------CCCCcceecccCCCCcHHHHHHHHhhcCC--cceEEEEEeecccCCCCcceEEE
Q 006370 224 TAPS----------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFAF 279 (648)
Q Consensus 224 v~~~----------------------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~--~~i~~i~i~~d~~~~g~srG~af 279 (648)
|-.+ .+.-.|.+++||+++|..++.++|...-. ...+.|.++..+ +|+.+|-||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp--dgrpTGdAF 210 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP--DGRPTGDAF 210 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC--CCCcccceE
Confidence 4221 11234667999999999999999974321 125667666653 899999999
Q ss_pred EEecCHHHHHHHHHHhCCCCeeeCCCCcceeeecc----------------------CCCCCCCcc----ccccceeeee
Q 006370 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA----------------------EPLREPDPE----IMAHVKTVFL 333 (648)
Q Consensus 280 V~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a----------------------~~~~~~~~~----~~~~~~~l~v 333 (648)
|.|.+.++|..|+.+.....- .+.|.+-.+ .+.....+. ......+|.+
T Consensus 211 vlfa~ee~aq~aL~khrq~iG-----qRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRL 285 (508)
T KOG1365|consen 211 VLFACEEDAQFALRKHRQNIG-----QRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRL 285 (508)
T ss_pred EEecCHHHHHHHHHHHHHHHh-----HHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEe
Confidence 999999999999986433210 111111110 000000011 1112568999
Q ss_pred cCCCCCCCHHHHHHhhcccC-cEEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 334 DGVPPHWKENQIRDQIKGYG-DVIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 334 ~nLp~~~t~~~l~~~f~~~G-~v~~--v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
++||+..+.++|.+||..|. .|.. |.++.+ ..|++.|-|||+|.+.+.|.+|..+.+++.+..+.|.|.-
T Consensus 286 RGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 286 RGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred cCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 99999999999999999886 3443 677766 5689999999999999999999999998888888877753
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.62 E-value=1.3e-14 Score=135.75 Aligned_cols=207 Identities=16% Similarity=0.311 Sum_probs=144.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRK----VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~----~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
....||||.||...+..++|+. +|++||.|..|..++ |.+.+|-|||.|.+.+.|..|+.+|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3455999999999999999888 999999999998864 578999999999999999999999999999999999
Q ss_pred CCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006370 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (648)
Q Consensus 224 v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g 303 (648)
+..+.....++..--...+. ..-. +....+..... .....|..+. ++...+
T Consensus 84 iqyA~s~sdii~~~~~~~v~---------~~~k--~~~~~~~~~~~-~~~~ng~~~~--------------~~~~~~--- 134 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVE---------KEKK--INGEILARIKQ-PLDTNGHFYN--------------MNRMNL--- 134 (221)
T ss_pred eecccCccchhhccCceecc---------ccCc--cccccccccCC-cccccccccc--------------cccccC---
Confidence 99998766664331110000 0000 00000000000 0000000000 011100
Q ss_pred CCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 304 ~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
- .+. . .........||+.|||..++.+.|..+|.+|.-...|+++.. ..+.|||+|.+...|
T Consensus 135 ------p----~p~--~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a 196 (221)
T KOG4206|consen 135 ------P----PPF--L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQA 196 (221)
T ss_pred ------C----CCc--c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhh
Confidence 0 000 0 112334578999999999999999999999998888888766 367899999999999
Q ss_pred HHHHHHhCCCeec-CCeeEEEE
Q 006370 384 VACINAINNKEFS-DGNSKVKL 404 (648)
Q Consensus 384 ~~Ai~~lng~~~~-g~~i~v~~ 404 (648)
..|...|++..|. ...+.|.+
T Consensus 197 ~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 197 SAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHHhhhhccceeccCceEEecc
Confidence 9999999998888 55555544
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.61 E-value=4.6e-14 Score=141.11 Aligned_cols=236 Identities=16% Similarity=0.256 Sum_probs=181.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC-------
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG------- 223 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~------- 223 (648)
-+++|.|+-+.+|-+-|..+|++||.|..|.-.... ..=-|.|+|.+.+.|+.|...|++.-|-.-.|.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 468899999999999999999999999877665431 122489999999999999999987654321110
Q ss_pred -----CCCC--------------C---------------------------------------------CCCcceecccC
Q 006370 224 -----TAPS--------------E---------------------------------------------DNDTLFVGNIC 239 (648)
Q Consensus 224 -----v~~~--------------~---------------------------------------------~~~~L~V~nLp 239 (648)
|+.. . .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0000 0 02556777776
Q ss_pred C-CCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCC
Q 006370 240 N-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (648)
Q Consensus 240 ~-~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~ 318 (648)
. .+|.+.|-.+|.-||. |.+|+|+.+. +-.|+|+|.+...|..|+..|++..+. ++.|+|.+++-..
T Consensus 307 ~~~VT~d~LftlFgvYGd--VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD--VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKHTN 374 (492)
T ss_pred hhccchhHHHHHHhhhcc--eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec----CceEEEeeccCcc
Confidence 4 5899999999999999 9999999873 357999999999999999999999884 7899988874221
Q ss_pred CCC------------------------------ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCC
Q 006370 319 EPD------------------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK 368 (648)
Q Consensus 319 ~~~------------------------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~ 368 (648)
-.. .....++.+|++.|+|.++++++|+..|...|-+....... ++
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~k 450 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QK 450 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CC
Confidence 100 01123456899999999999999999999988665554432 22
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeecCC-eeEEEEEe
Q 006370 369 RKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRA 406 (648)
Q Consensus 369 ~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~i~v~~~~ 406 (648)
.+-+|++.+++.++|..|+..|+++.++.. .++|.+.+
T Consensus 451 d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 451 DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 355899999999999999999999998876 77777764
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=6.1e-15 Score=132.13 Aligned_cols=140 Identities=19% Similarity=0.314 Sum_probs=123.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..+++|||+|||.++.+.+|.++|-+||.|..|.|..- -..-.||||+|++..+|..||..-++-.+.|..|+|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 36789999999999999999999999999999998433 345789999999999999999998988888888888654
Q ss_pred CC--------------------------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcc
Q 006370 228 ED--------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 275 (648)
Q Consensus 228 ~~--------------------------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~sr 275 (648)
.. ...|.|.+||.+.++++|+++..+.|. |--..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd--vCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD--VCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC--eeeeeeecc--------
Confidence 21 346899999999999999999999998 888888877
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 276 GFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 276 G~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
|.+.|+|...++.+-|+.+|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 6899999999999999999887665
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=2.8e-15 Score=136.60 Aligned_cols=81 Identities=27% Similarity=0.604 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|+.|.|++++.|++++|||||+|.+.++|++||+.|++..|.|+.|.|..+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 56
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.59 E-value=2.5e-14 Score=140.51 Aligned_cols=198 Identities=18% Similarity=0.306 Sum_probs=139.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
-...|||.|||.++|.+++.++|++||.|. .|+|.++. .|+.+|-|.|.|...+++..|++.|+...|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 445699999999999999999999999773 48888884 499999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 221 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 221 ~i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
.|+|..+. |+.-|.-.+ +++.++- ...-++ +..++...+
T Consensus 212 ~~rVerAk----------------------fq~Kge~~~-----------~~k~k~k-------~~~~kk-~~k~q~k~~ 250 (382)
T KOG1548|consen 212 KLRVERAK----------------------FQMKGEYDA-----------SKKEKGK-------CKDKKK-LKKQQQKLL 250 (382)
T ss_pred EEEEehhh----------------------hhhccCcCc-----------ccccccc-------cccHHH-HHHHHHhhc
Confidence 99887664 333332000 0000000 001111 111122111
Q ss_pred eeCCCCcceeeeccCCCCCCCccccccceeeeecCCCC----CCC-------HHHHHHhhcccCcEEEEEEeecCCCCCc
Q 006370 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP----HWK-------ENQIRDQIKGYGDVIRIVLARNMSTAKR 369 (648)
Q Consensus 301 ~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~----~~t-------~~~l~~~f~~~G~v~~v~i~~d~~~~~~ 369 (648)
- -+. .. ..+......++|.|+||-. ..+ .++|++-+.+||.|..|.|.-. ++
T Consensus 251 d----w~p--------d~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hP 313 (382)
T KOG1548|consen 251 D----WRP--------DR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HP 313 (382)
T ss_pred c----cCC--------Cc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CC
Confidence 0 000 00 1111222346788888833 222 4678888999999999988543 47
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 370 ~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.|.+-|.|.+.++|..||..|+|+.|.|+.|...+.
T Consensus 314 dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 314 DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 889999999999999999999999999999888763
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3e-14 Score=134.94 Aligned_cols=149 Identities=18% Similarity=0.337 Sum_probs=125.1
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
..+||++|++.+.+.+|..+|..||. |..|.++. ||+||+|.+..+|..|+..|++..+. +..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~--~~d~~mk~---------gf~fv~fed~rda~Dav~~l~~~~l~----~e~~v 66 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK--IPDADMKN---------GFGFVEFEDPRDADDAVHDLDGKELC----GERLV 66 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc--cccceeec---------ccceeccCchhhhhcccchhcCceec----ceeee
Confidence 36899999999999999999999998 88887755 79999999999999999999999884 44477
Q ss_pred eeccCCCCCCC---------------ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEE
Q 006370 311 VAFAEPLREPD---------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (648)
Q Consensus 311 v~~a~~~~~~~---------------~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV 375 (648)
|.++....... .....+.++|.|.+|+..++|++|.++|.++|.++...+ .++++||
T Consensus 67 ve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v 138 (216)
T KOG0106|consen 67 VEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFV 138 (216)
T ss_pred eecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccce
Confidence 77776421100 111234578999999999999999999999999866555 3568999
Q ss_pred EeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 376 DFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 376 ~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
+|++.++|..||..|++..+.++.|.+
T Consensus 139 ~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 139 EFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999999999999887
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.8e-12 Score=115.91 Aligned_cols=74 Identities=16% Similarity=0.392 Sum_probs=69.6
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.++|||+||+..+++.+|..+|..||.|..|+|.++ +.|||||+|++..+|..|+..|+|+.|.|..|.|++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 479999999999999999999999999999999876 58999999999999999999999999999998888763
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2.2e-13 Score=108.38 Aligned_cols=70 Identities=27% Similarity=0.604 Sum_probs=66.7
Q ss_pred eeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 331 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
|||+|||..+|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6788999999999999999999999999999998764
No 60
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=129.18 Aligned_cols=87 Identities=21% Similarity=0.415 Sum_probs=77.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||++|+|.++.+.|+++|++||+|+++.|+.|+.+++++|||||+|.+.++|.+|++.. +-.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3479999999999999999999999999999999999999999999999999999999999754 558999999999886
Q ss_pred ecCCCCCC
Q 006370 407 RLSNPMPK 414 (648)
Q Consensus 407 ~~~~~~~~ 414 (648)
.-.++++.
T Consensus 90 lg~~pR~~ 97 (247)
T KOG0149|consen 90 LGGKPRPV 97 (247)
T ss_pred hcCccCCC
Confidence 64554443
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.5e-13 Score=109.30 Aligned_cols=70 Identities=34% Similarity=0.743 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
|||+|||.++|+++|+++|++||.|..+.++.+ .++.++++|||+|.+.++|.+||+.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7789999999999999999999999999999998763
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=2.1e-13 Score=124.58 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=77.2
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
-.+.|.|-||.+.||.++|+.+|++||.|-.|.|++|..|..++|||||.|....+|+.|+++|+|..|+|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 63
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=120.51 Aligned_cols=162 Identities=19% Similarity=0.242 Sum_probs=122.2
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
.-+||||.+||.++...+|..+|..|-- .+.+.|....+.....+-+|||+|.+...|.+|++.||+..+-.. ...+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~G--YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE-~~st 109 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHG--YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE-TGST 109 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCC--ccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc-cCce
Confidence 3689999999999999999999998854 667777665444455678999999999999999999999876333 3566
Q ss_pred eeeeccCCCCCC--Cc----------------------------------------------------------------
Q 006370 309 VKVAFAEPLREP--DP---------------------------------------------------------------- 322 (648)
Q Consensus 309 l~v~~a~~~~~~--~~---------------------------------------------------------------- 322 (648)
|.+.+++...+. ..
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 666665221100 00
Q ss_pred ---------------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006370 323 ---------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (648)
Q Consensus 323 ---------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai 387 (648)
.....+.+|||.||..+||+++|+.+|+.|--...++|.. ......|||+|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHH
Confidence 0000124799999999999999999999997666666532 123458999999999999999
Q ss_pred HHhCCCeecC
Q 006370 388 NAINNKEFSD 397 (648)
Q Consensus 388 ~~lng~~~~g 397 (648)
..|+|..|..
T Consensus 266 ~~lqg~~~s~ 275 (284)
T KOG1457|consen 266 NHLQGNLLSS 275 (284)
T ss_pred HHhhcceecc
Confidence 9999877653
No 64
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.8e-12 Score=125.11 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=77.5
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||.-|++.+++..|+..|+.||.|..|.||++..||+++|||||+|++..+..+|.+..+|.+|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999888775
Q ss_pred ee
Q 006370 406 AR 407 (648)
Q Consensus 406 ~~ 407 (648)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=4.4e-13 Score=125.70 Aligned_cols=77 Identities=36% Similarity=0.684 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
-..|||++|+|.++.+.|+.+|++||+|+++.|+.|+.|+++|||+||+|.+.++|.+|++. .+.+|.||+..+..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 35899999999999999999999999999999999999999999999999999999999986 457889997765443
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.4e-13 Score=113.25 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=76.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+++|||+||++.+++++|.++|+++|.|..|.+-.|+.+..+-|||||+|.+.++|..|+.-+||..+..+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=5.1e-12 Score=127.33 Aligned_cols=169 Identities=19% Similarity=0.289 Sum_probs=137.6
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHh-hcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~-~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~ 305 (648)
+...+.+||.|||+++.+.+|+++|. +.|+ |+.|.|+.|. +++++|+|.|+|++.+.+++|++.||+..+ .
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGe--v~yveLl~D~--~GK~rGcavVEFk~~E~~qKa~E~lnk~~~----~ 112 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGE--VEYVELLFDE--SGKARGCAVVEFKDPENVQKALEKLNKYEV----N 112 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCc--eEeeeeeccc--CCCcCCceEEEeeCHHHHHHHHHHhhhccc----c
Confidence 34456799999999999999999996 4567 9999999984 899999999999999999999999999988 5
Q ss_pred CcceeeeccCCCC---------------------------------------------C--CCc----------------
Q 006370 306 ERTVKVAFAEPLR---------------------------------------------E--PDP---------------- 322 (648)
Q Consensus 306 ~~~l~v~~a~~~~---------------------------------------------~--~~~---------------- 322 (648)
+++|.|+-..... . ...
T Consensus 113 GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 113 GRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS 192 (608)
T ss_pred CceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence 7887776431100 0 000
Q ss_pred ---------------c--ccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 006370 323 ---------------E--IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (648)
Q Consensus 323 ---------------~--~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~ 385 (648)
. ......++||.||.+.+....|++.|.-.|.|..|.+..++. +.++|||.|+|.++-.|-.
T Consensus 193 ~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 193 NYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHH
Confidence 0 001135789999999999999999999999999999988865 5899999999999999999
Q ss_pred HHHHhCCCeecCCeeEEEE
Q 006370 386 CINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~ 404 (648)
||..|++.-+..++..+.+
T Consensus 272 aIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 272 AISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHhhccCCCccccceeec
Confidence 9999998777776655555
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=9.6e-13 Score=123.71 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|.|.||+.++++++|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..|||.-+..-.|.|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999888888764
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.1e-12 Score=123.30 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=76.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
-.+.++|.|.||+.++++.+|++||.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||..||+.=+....|.|.+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34788999999999999999999999999999999999999999999999999999999999999999877777777777
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+.+
T Consensus 266 skP 268 (270)
T KOG0122|consen 266 SKP 268 (270)
T ss_pred cCC
Confidence 664
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=2.8e-12 Score=102.13 Aligned_cols=70 Identities=24% Similarity=0.566 Sum_probs=64.4
Q ss_pred eeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 331 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
|+|+|||+++++++|+++|+.+|.|..|.+..++. +..+|+|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999876 89999999999999999999999999999998763
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.36 E-value=5.5e-12 Score=116.72 Aligned_cols=146 Identities=21% Similarity=0.258 Sum_probs=112.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec-CCCCCCcceEEEEEechhhHHHHHHhcCCCeEe---eeccCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCGT 224 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d-~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~---G~~i~v 224 (648)
.-+||||.+||.++..-+|..+|..|--.+.+.|... +.....+-+|||.|.+...|..|+.+||+..|. +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999876766666432 222345689999999999999999999997664 222221
Q ss_pred CCCC----------------------------------------------------------------------------
Q 006370 225 APSE---------------------------------------------------------------------------- 228 (648)
Q Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (648)
..++
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 1000
Q ss_pred ----------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHH
Q 006370 229 ----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292 (648)
Q Consensus 229 ----------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~ 292 (648)
...+|||.||..++|+++|+.+|+.|-- ...++|... . ....|||+|++.+.|..|+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g--f~~l~~~~~---~--g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG--FHILKIRAR---G--GMPVAFADFEEIEQATDAM 265 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC--ceEEEEecC---C--CcceEeecHHHHHHHHHHH
Confidence 0358999999999999999999999975 444444321 2 2357999999999999999
Q ss_pred HHhCCCCee
Q 006370 293 KRLQKPDVV 301 (648)
Q Consensus 293 ~~l~~~~~~ 301 (648)
..|++..+.
T Consensus 266 ~~lqg~~~s 274 (284)
T KOG1457|consen 266 NHLQGNLLS 274 (284)
T ss_pred HHhhcceec
Confidence 999998763
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=8.5e-14 Score=124.72 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=78.3
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
-++-.++.-|||+|||+++||.||-.+|++||+|+.|.|++|+.||+|+||||++|.+..+...|+..||+..|.|+.|+
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 45566889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 006370 224 TAP 226 (648)
Q Consensus 224 v~~ 226 (648)
|..
T Consensus 109 VDH 111 (219)
T KOG0126|consen 109 VDH 111 (219)
T ss_pred eee
Confidence 754
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=1.6e-12 Score=103.65 Aligned_cols=69 Identities=41% Similarity=0.693 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
|||+|||+.+|+++|+++|+.||.|..|.+..++. +.++++|||+|.+.++|.+|+..+++..|.|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999877 8999999999999999999999999899999876
No 74
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=127.03 Aligned_cols=84 Identities=13% Similarity=0.268 Sum_probs=75.8
Q ss_pred cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 323 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
......++|+|.|||+..-+.||+.+|.+||.|.+|.|+.+. ..+||||||+|++.++|.+|-++|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 334456899999999999999999999999999999999884 458999999999999999999999999999999988
Q ss_pred EEEeec
Q 006370 403 KLRARL 408 (648)
Q Consensus 403 ~~~~~~ 408 (648)
..+...
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 876543
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.5e-12 Score=110.04 Aligned_cols=83 Identities=16% Similarity=0.345 Sum_probs=76.7
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.....++||||+||++-+||++|.++|+++|+|..|.+=.|+.+..+.|||||+|.+.++|..||+-+++..|..+.|.+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 006370 225 APS 227 (648)
Q Consensus 225 ~~~ 227 (648)
.+.
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 544
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=5.2e-12 Score=123.00 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=71.0
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.++|||+||++.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999998853 57999999999999999995 999999999999988655
Q ss_pred cC
Q 006370 408 LS 409 (648)
Q Consensus 408 ~~ 409 (648)
+.
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 77
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.33 E-value=9.1e-11 Score=116.33 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=170.3
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec--cCCCCCC----
Q 006370 155 IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR--CGTAPSE---- 228 (648)
Q Consensus 155 V~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~--i~v~~~~---- 228 (648)
|-|--+.+|.+-|..++...|+|..|.|++. +--.|.|+|.+.+.|++|.++||+..|-.-. |+|..++
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4455578999999999999999999999864 2347999999999999999999997653211 1111000
Q ss_pred --------------------------------------------------------------------------------
Q 006370 229 -------------------------------------------------------------------------------- 228 (648)
Q Consensus 229 -------------------------------------------------------------------------------- 228 (648)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred ----CCCcceecccCCC-CcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006370 229 ----DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (648)
Q Consensus 229 ----~~~~L~V~nLp~~-~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g 303 (648)
+...+.|-+|... +.-+.|-.+|-.||. |..|++|+.. .|.|.|++.+..+.+.|+..||+..++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN--V~rvkFmkTk------~gtamVemgd~~aver~v~hLnn~~lf-- 351 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN--VERVKFMKTK------PGTAMVEMGDAYAVERAVTHLNNIPLF-- 351 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc--eeeEEEeecc------cceeEEEcCcHHHHHHHHHHhccCccc--
Confidence 0234666777643 566788999999999 9999999974 378999999999999999999998874
Q ss_pred CCCcceeeeccCCCCC--------------------------------CCccccccceeeeecCCCCCCCHHHHHHhhcc
Q 006370 304 HPERTVKVAFAEPLRE--------------------------------PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351 (648)
Q Consensus 304 ~~~~~l~v~~a~~~~~--------------------------------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~ 351 (648)
+.+|.|.+++...- ....+...+++|..-|.|..+|++.|..+|..
T Consensus 352 --G~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ne 429 (494)
T KOG1456|consen 352 --GGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNE 429 (494)
T ss_pred --cceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhh
Confidence 66777666532110 11122334678999999999999999999987
Q ss_pred cCc-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 352 YGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 352 ~G~-v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
.+. .++|+|..-+... ..-+.++|++..+|..||.+||...|.+.
T Consensus 430 k~v~~~svkvFp~kser--SssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 430 KDVPPTSVKVFPLKSER--SSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred cCCCcceEEeecccccc--cccceeeeehHHHHHHHHHHhccccccCC
Confidence 653 3566666554322 33589999999999999999999999875
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=2.1e-12 Score=118.16 Aligned_cols=82 Identities=27% Similarity=0.506 Sum_probs=77.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.+....+|.|-||.+.+|.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|....+|+.||++|++.+|.|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 006370 226 PS 227 (648)
Q Consensus 226 ~~ 227 (648)
.+
T Consensus 89 ~a 90 (256)
T KOG4207|consen 89 MA 90 (256)
T ss_pred hh
Confidence 44
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=124.92 Aligned_cols=170 Identities=24% Similarity=0.433 Sum_probs=122.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
.++|||+|||+++|+++|.++|.+||.|..|.|..++.++.++|+|||+|.+.++|..|+..+++..|.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999998877643
Q ss_pred -CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 230 -NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 230 -~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
..... ..... ..+.. .. ..
T Consensus 195 ~~~~~~------------------------------------~~~~~----------~~~~~-----~~---------~~ 214 (306)
T COG0724 195 ASQPRS------------------------------------ELSNN----------LDASF-----AK---------KL 214 (306)
T ss_pred cccccc------------------------------------ccccc----------cchhh-----hc---------cc
Confidence 00000 00000 00000 00 00
Q ss_pred eeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006370 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (648)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (648)
.............+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111234688999999999999999999999999777776654444344444555555554444443
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.6e-12 Score=123.19 Aligned_cols=138 Identities=26% Similarity=0.481 Sum_probs=118.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC--
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~-- 228 (648)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..|++.+|.|..+.|..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999884 4688999999999999999999999998875443332
Q ss_pred ------------------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecC
Q 006370 229 ------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284 (648)
Q Consensus 229 ------------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~ 284 (648)
....|+|.+++..+.+.+|.++|..+|. ++...+ ..+++||+|.+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~---------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA---------RRNFAFVEFSE 142 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh---------hccccceeehh
Confidence 2467889999999999999999999998 544444 24789999999
Q ss_pred HHHHHHHHHHhCCCCeeeCCCCcceee
Q 006370 285 HVDAMAAYKRLQKPDVVFGHPERTVKV 311 (648)
Q Consensus 285 ~~~A~~A~~~l~~~~~~~g~~~~~l~v 311 (648)
.++|+.|+..|++..+. ++.|.+
T Consensus 143 ~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred hhhhhhcchhccchhhc----Cceeee
Confidence 99999999999999883 666665
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.9e-12 Score=122.86 Aligned_cols=77 Identities=26% Similarity=0.520 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.+-+||||.-|+++++|..|+..|+.||+|+.|+|+.++.||+++|||||+|.+..+...|.+..++.+|.|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998744
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=5e-12 Score=123.14 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=70.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
.++|||+|||+.+|+++|++||+.||.|+.|.|+.+. .++|||||+|.+.++|..||. |++..|.|+.|.|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999885 357999999999999999996 999999999999887653
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.6e-13 Score=119.05 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=78.5
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
+.-|||+|||+.+|+-||.-.|++||.|+.|.+++|+.||+++||||++|++..+..-|+..|||..|.|+.|+|.-...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred cCCC
Q 006370 408 LSNP 411 (648)
Q Consensus 408 ~~~~ 411 (648)
+..|
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 5554
No 84
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=105.04 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=80.7
Q ss_pred ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 322 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
|+.....+.|||.++...+|+++|.+.|..||.|.+|.+-.|+.||-.+|||+|+|++.++|++||.+|||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeec
Q 006370 402 VKLRARL 408 (648)
Q Consensus 402 v~~~~~~ 408 (648)
|.|+...
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 8887554
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1e-11 Score=111.16 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
-.+.|||+||+..+|+.+|..+|..||+|..|+|-++ ..|||||+|.+..+|..|+..|++..|+|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999999764 48999999999999999999999999999988766553
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=1.8e-11 Score=125.09 Aligned_cols=77 Identities=18% Similarity=0.393 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEech--hhHHHHHHhcCCCeEeeeccCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK--EHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~--e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
...+|||+||++.+|+++|..+|..||.|..|.|+ +.|| +|||||+|.+. .++.+||..||+..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45799999999999999999999999999999999 4567 99999999987 789999999999999999999987
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 754
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=2.5e-11 Score=124.11 Aligned_cols=76 Identities=13% Similarity=0.266 Sum_probs=69.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH--EAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~--~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
...+|||+||++.+|+++|..+|..||.|..|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346999999999999999999999999999999994 466 99999999987 789999999999999999999987
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 54
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.23 E-value=4.8e-11 Score=94.66 Aligned_cols=71 Identities=23% Similarity=0.559 Sum_probs=66.1
Q ss_pred eeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
+|+|+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 678899999999999999999999999999988665
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=2.6e-11 Score=116.07 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
...||||+||++.+|+++|++||+.||+|.+|.|+++ +..+++|||+|.+.++|..||. |++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4579999999999999999999999999999999988 4556899999999999999995 99999999999887765
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=5.9e-11 Score=93.75 Aligned_cols=70 Identities=29% Similarity=0.579 Sum_probs=66.0
Q ss_pred ecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 333 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 333 v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
|+|||..+++++|+++|++||.|..+.|..+..++.++|+|||+|.+.++|..|+..|++..+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778899999999999999999999999999999988765
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=5.2e-11 Score=94.42 Aligned_cols=71 Identities=30% Similarity=0.667 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 152 tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
+|+|+|||..++.++|+++|.+||.|..+.++.+. +.++++|||+|.+.++|..|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 778999999999999999999999999999888765
No 92
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=7.3e-11 Score=96.18 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=68.3
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
...|||+|||+.+|.+++.++|.+||.|..|+|-..+.| +|.|||.|++..+|++|+..|+|..+.++.+.|-+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 468999999999999999999999999999999776554 89999999999999999999999999999887765
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=4.1e-11 Score=97.64 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..+.|||+|||+++|.+++.++|.+||.|.+|+|=.. ...+|+|||.|++..+|.+|+..|++..+.++.+.|..-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 5689999999999999999999999999999999544 556999999999999999999999999998887766543
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.4e-11 Score=105.15 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=76.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
...+...|||.++...+|+++|.+.|..||+|+.|+|..|+.||-.+|||+|+|.+.++|++|+..||+..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CC
Q 006370 226 PS 227 (648)
Q Consensus 226 ~~ 227 (648)
++
T Consensus 148 w~ 149 (170)
T KOG0130|consen 148 WC 149 (170)
T ss_pred EE
Confidence 54
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=9.7e-11 Score=112.22 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=69.3
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
..+|+|+||++.+|+++|++||+.||.|..|.|+++. ...+||||+|.+.++|..|+ .|||..|.++.|.|+....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4789999999999999999999999999999999884 44689999999999999999 5999999999988876544
Q ss_pred c
Q 006370 408 L 408 (648)
Q Consensus 408 ~ 408 (648)
+
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=9.2e-11 Score=92.61 Aligned_cols=70 Identities=33% Similarity=0.652 Sum_probs=65.7
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 155 IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 155 V~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
|+|||..+++++|+.+|++||.|..|.+..++.++.++++|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998888999999999999999999999999999888887754
No 97
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4e-11 Score=117.34 Aligned_cols=78 Identities=24% Similarity=0.465 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|+|.||||...+.||+.+|.+||.|.+|.|+-+- --||||+||+|.+.++|++|.++||+.+|.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 56899999999999999999999999999999999763 3589999999999999999999999999999999987664
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4.6e-12 Score=138.10 Aligned_cols=225 Identities=17% Similarity=0.184 Sum_probs=179.1
Q ss_pred CCCEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQE-DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~-dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
....+.+.|+.+..... .++..|+.+|.|+.|++......-+...+.++.+....+++.|+.. .+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCCCC
Confidence 44566778888777666 5678899999999999976323233334899999999999999874 556666666665444
Q ss_pred CC----------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHH
Q 006370 228 ED----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (648)
Q Consensus 228 ~~----------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A 291 (648)
.. ..++||.||+..+.+.+|...|..+|. +..+++... .++++.+|.|||+|...+.+.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~--~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT--IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch--hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 32 347899999999999999999999998 555555422 34889999999999999999999
Q ss_pred HHHhCCCCeeeCCCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCccc
Q 006370 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371 (648)
Q Consensus 292 ~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G 371 (648)
+....+..+ + ...|+|.|+|+..|.+.|+.+|.++|.++.+.++.. ..|+++|
T Consensus 726 V~f~d~~~~-----g---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg 778 (881)
T KOG0128|consen 726 VAFRDSCFF-----G---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKG 778 (881)
T ss_pred hhhhhhhhh-----h---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hcccccc
Confidence 986555443 1 247999999999999999999999999999987766 4689999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 372 ~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
.|||.|.+..+|.+++..+....+.-..+.|.+
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999999988887777776655554
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.4e-11 Score=112.06 Aligned_cols=82 Identities=22% Similarity=0.459 Sum_probs=77.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||++|...+++.-|...|-+||.|+.|.|+.|..+++.||||||+|.-.++|.+||..||+.++.|+.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 43
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=2.3e-10 Score=90.92 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=54.5
Q ss_pred HHHHHHhhc----ccCcEEEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 342 ENQIRDQIK----GYGDVIRIV-LARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 342 ~~~l~~~f~----~~G~v~~v~-i~~d~~~--~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
+++|+++|+ +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||+.|.|+.|+|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 6666666 899999999999999999999999999999998776
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5.1e-10 Score=89.18 Aligned_cols=73 Identities=29% Similarity=0.592 Sum_probs=67.4
Q ss_pred eeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999887554 678999999999999999999999999999887775
No 102
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2e-10 Score=113.21 Aligned_cols=86 Identities=27% Similarity=0.437 Sum_probs=80.7
Q ss_pred hhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 144 ~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
.....+.+.|||-.|.+-+|.++|.-+|+.||+|.+|.|++|..||.+..||||+|.+++++.+|.-+|++.+|..+.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45566889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 006370 224 TAPSED 229 (648)
Q Consensus 224 v~~~~~ 229 (648)
|..+..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 877653
No 103
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6e-11 Score=109.52 Aligned_cols=82 Identities=18% Similarity=0.538 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...+||||++|..++|+.-|...|-.||.|+.|.|..|-.+.+++||+||+|...|+|..||..||...|.|+.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
.+
T Consensus 88 kP 89 (298)
T KOG0111|consen 88 KP 89 (298)
T ss_pred CC
Confidence 65
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.6e-10 Score=119.11 Aligned_cols=160 Identities=21% Similarity=0.379 Sum_probs=127.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....+.|||++||..+++.+++++...||++....++++..+|.++||||.+|.+......|++.||+..+.++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 33567899999999999999999999999999999999999999999999999999999999999999998888776644
Q ss_pred CCC------------------------------CCcceecccCCCCcH-------------HHHHHHHhhcCCcceEEEE
Q 006370 227 SED------------------------------NDTLFVGNICNTWTK-------------EAIKQKLKDYGVEGVENIN 263 (648)
Q Consensus 227 ~~~------------------------------~~~L~V~nLp~~~t~-------------e~l~~~f~~~G~~~i~~i~ 263 (648)
+-. ...|.+.|+ +|. ++++.-+.+||. |..|.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~--v~~v~ 440 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGA--VRSVE 440 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCc--eeEEe
Confidence 321 112222222 222 345566678887 88888
Q ss_pred Eeec-c-cCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccC
Q 006370 264 LVSD-I-QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315 (648)
Q Consensus 264 i~~d-~-~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~ 315 (648)
|.+. . .......|-.||+|.+.+++++|++.|+|..+ .+++|...+-.
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF----~nRtVvtsYyd 490 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF----ANRTVVASYYD 490 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee----CCcEEEEEecC
Confidence 8776 2 12234567789999999999999999999998 57887766543
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.05 E-value=6e-10 Score=110.97 Aligned_cols=148 Identities=26% Similarity=0.296 Sum_probs=112.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc---c-CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec---
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFER---I-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR--- 221 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~---~-G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~--- 221 (648)
..-.|.+++||+++|+.++.+||.+ . |.++.|.+++. -+|+..|-|||.|..+++|+.||.+.. ..|.-+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khr-q~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHR-QNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHH-HHHhHHHHHH
Confidence 4567889999999999999999963 2 24556666654 458999999999999999999998521 1111111
Q ss_pred ----------------------------------cCCCCCCCCCcceecccCCCCcHHHHHHHHhhcCCc-ceEEEEEee
Q 006370 222 ----------------------------------CGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVE-GVENINLVS 266 (648)
Q Consensus 222 ----------------------------------i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~-~i~~i~i~~ 266 (648)
..+.....+.+|.+++||.++|.++|..+|..|-.. ....|.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 112334457789999999999999999999998641 122356666
Q ss_pred cccCCCCcceEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 267 d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
+ ..|+..|-|||+|.+.++|.+|+.+.+++..
T Consensus 318 N--~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 318 N--GQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred c--CCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 5 4899999999999999999999987776543
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.04 E-value=7.8e-10 Score=88.09 Aligned_cols=72 Identities=35% Similarity=0.694 Sum_probs=66.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 152 tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ .++++|||+|.+.++|..|+..+++..+.|+.+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 5899999999999999999999999999999987655 77999999999999999999999999888887765
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.04 E-value=3.4e-10 Score=119.65 Aligned_cols=80 Identities=28% Similarity=0.472 Sum_probs=77.1
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
..|||+|||+++++++|..+|+..|.|..++++.|+.||+.+||||++|.+.++|..|++.|||.++.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999987554
No 108
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.03 E-value=7.3e-10 Score=113.01 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=75.8
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..+|||+|||+.+|+++|.++|.+||.|..|.|..++.++.++|||||+|.+.++|..|+..|++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999988754
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.03 E-value=9.8e-09 Score=109.49 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=107.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.+.+.+.|-++++++.+...++++||... .|..+.|..+...+...|-++|.|.....+++|++. |...+..+.+.+.
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTG 384 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhcceeec
Confidence 34467788899999999999999998654 366677777766666689999999999999999985 3333333333322
Q ss_pred CC---------------------------------------------CCCCcceecccCCCCcHHHHHHHHhhcCCcceE
Q 006370 226 PS---------------------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVE 260 (648)
Q Consensus 226 ~~---------------------------------------------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~ 260 (648)
+. .....|||..||..+++..+.++|...-. |+
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~--Ve 462 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA--VE 462 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh--hh
Confidence 11 11468999999999999999999988766 77
Q ss_pred E-EEEeecccCCCCcceEEEEEecCHHHHHHHHH
Q 006370 261 N-INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (648)
Q Consensus 261 ~-i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~ 293 (648)
+ |.|.+-+ +++.++.|||.|...+++..|+.
T Consensus 463 d~I~lt~~P--~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 463 DFIELTRLP--TDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred heeEeccCC--cccccchhhheeccccccchhhh
Confidence 7 5565554 78889999999998766666654
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=1.4e-09 Score=82.37 Aligned_cols=56 Identities=21% Similarity=0.492 Sum_probs=50.6
Q ss_pred HHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 345 l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
|+++|++||.|..|.+..+. +++|||+|.+.++|..|+..|||..|.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997763 589999999999999999999999999999999874
No 111
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-09 Score=114.17 Aligned_cols=78 Identities=18% Similarity=0.332 Sum_probs=65.8
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
..|||+|||.+++...|+++|++||.|+...|......++..+||||+|.+..+++.||.+- -..|+++.+.|+.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 45999999999999999999999999999988665434445599999999999999999864 7788888888876543
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=3.9e-10 Score=119.18 Aligned_cols=79 Identities=23% Similarity=0.540 Sum_probs=76.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
++|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|.+|++.||+..+.|++|+|..+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999877653
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.00 E-value=7.3e-10 Score=112.07 Aligned_cols=174 Identities=14% Similarity=0.231 Sum_probs=130.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
....++|++++.+.+.+.++..++...|.+..+.+........++++++|.|+..+.+..||.......+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 36789999999999999999999999998888888887778899999999999999999999864332322221110000
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
..+.... .+. ..
T Consensus 166 ---------------------------------~~~~~~~---------------------------~n~--------~~ 177 (285)
T KOG4210|consen 166 ---------------------------------TRRGLRP---------------------------KNK--------LS 177 (285)
T ss_pred ---------------------------------ccccccc---------------------------cch--------hc
Confidence 0000000 000 00
Q ss_pred ceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006370 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (648)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai 387 (648)
.+ ......+.++|.+|++.++.++|+.+|..+|.|+.++++.+..++..+|||+|.|.+...+..|+
T Consensus 178 ~~-------------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 178 RL-------------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cc-------------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 00 00001234559999999999999999999999999999999999999999999999999999998
Q ss_pred HHhCCCeecCCeeEEE
Q 006370 388 NAINNKEFSDGNSKVK 403 (648)
Q Consensus 388 ~~lng~~~~g~~i~v~ 403 (648)
.. +...+.++.+.+.
T Consensus 245 ~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLE 259 (285)
T ss_pred hc-ccCcccCcccccc
Confidence 77 7888888775554
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=1.2e-09 Score=86.73 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=55.1
Q ss_pred HHHHHHHhh----ccCCeEEEE-EEecCCC--CCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 164 QEDVRKVFE----RIGEVIEVR-LHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 164 e~dL~~~F~----~~G~v~~v~-i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
+++|+++|+ +||.|..|. |+.++.+ +.++|+|||+|.+.++|.+|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999996 7777766 899999999999999999999999999999998754
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=2.5e-09 Score=112.28 Aligned_cols=72 Identities=26% Similarity=0.461 Sum_probs=65.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
.-..++|+|-|||..+++++|..+|+.||+|..|+.. -..++.+||+|.+..+|+.||++|+...|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4468999999999999999999999999999997653 34588999999999999999999999999998887
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.3e-09 Score=107.42 Aligned_cols=84 Identities=17% Similarity=0.323 Sum_probs=79.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
+.+.|||..|.+-+|+++|.-+|+.||.|..|.|++|..||.+..||||+|++.+++++|.-+|++..|..+.|+|.+..
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ecCC
Q 006370 407 RLSN 410 (648)
Q Consensus 407 ~~~~ 410 (648)
..++
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 5544
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=2.9e-09 Score=98.38 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=73.2
Q ss_pred ceeeeecCCCCCCCHHHHHHhhccc-CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|..||.-+.+..|..+|.++ |.|+.+++.+++.||.++|||||+|++.+.|.-|.+.||++.|.++.|.|.+=
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4578999999999999999999998 78888888899999999999999999999999999999999999999999874
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.87 E-value=6.9e-09 Score=110.64 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=66.7
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
+.|.+.|+|++++-+||.+||..|-.+-.-.+++-...|...|-|.|-|++.++|.+|+..|+++.|..+.|+|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4789999999999999999999997665444455457799999999999999999999999999999999987764
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3e-08 Score=103.43 Aligned_cols=144 Identities=23% Similarity=0.338 Sum_probs=110.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCC--CCcc---eEEEEEechhhHHHHHHhcCC----CeE
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKG---YAFVKFANKEHAKRALTEMKN----PVI 217 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg--~~kG---~afV~F~~~e~A~~Al~~l~~----~~l 217 (648)
..-++.|||++||++++|+.|...|..||.|.--.-.+....+ ..+| |+|+.|+++.++...|.++.. ..|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3457899999999999999999999999987433221111111 3567 999999999999887776421 122
Q ss_pred -------eeeccCC---------------CCCCCCCcceecccCCCCcHHHHHHHHh-hcCCcceEEEEEeecccCCCCc
Q 006370 218 -------CGKRCGT---------------APSEDNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEGLS 274 (648)
Q Consensus 218 -------~G~~i~v---------------~~~~~~~~L~V~nLp~~~t~e~l~~~f~-~~G~~~i~~i~i~~d~~~~g~s 274 (648)
..+.+.| ....+.+||||++||.-+|.++|..+|+ -||. |.-+-|-.|++ -.-.
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg--V~yaGIDtD~k-~KYP 412 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG--VLYVGIDTDPK-LKYP 412 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc--eEEEEeccCcc-cCCC
Confidence 1111222 1234589999999999999999999998 8897 99998888853 5678
Q ss_pred ceEEEEEecCHHHHHHHHH
Q 006370 275 RGFAFVMFSCHVDAMAAYK 293 (648)
Q Consensus 275 rG~afV~f~~~~~A~~A~~ 293 (648)
+|.|=|+|.+..+-.+||.
T Consensus 413 kGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCcceeeecccHHHHHHHh
Confidence 8999999999999999987
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=5.2e-08 Score=101.69 Aligned_cols=157 Identities=17% Similarity=0.314 Sum_probs=111.3
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEee--cccCCCCcce---EEEEEecCHHHHHHHHHHhCC--CCeee
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVS--DIQHEGLSRG---FAFVMFSCHVDAMAAYKRLQK--PDVVF 302 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~--d~~~~g~srG---~afV~f~~~~~A~~A~~~l~~--~~~~~ 302 (648)
+++|||++||+.++++.|...|..||. ..|.... .....-..+| |+|+.|+++..+..-+..... ...++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 679999999999999999999999995 2333331 1111224556 999999999888776664332 11111
Q ss_pred CC-----CCcceeee---ccCCC-CCCCccccccceeeeecCCCCCCCHHHHHHhhc-ccCcEEEEEEeecCCCCCcccE
Q 006370 303 GH-----PERTVKVA---FAEPL-REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK-GYGDVIRIVLARNMSTAKRKDY 372 (648)
Q Consensus 303 g~-----~~~~l~v~---~a~~~-~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~d~~~~~~~G~ 372 (648)
.. ..+.+.|. .++.. ...........++|||++||.-++.++|..+|. -||.|..|-|-.|..-.-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 00 01111111 01100 011233455678999999999999999999999 6999999999888777889999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 006370 373 GFIDFSTHEAAVACINA 389 (648)
Q Consensus 373 afV~F~~~~~A~~Ai~~ 389 (648)
|-|+|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999874
No 121
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1e-09 Score=101.69 Aligned_cols=137 Identities=20% Similarity=0.293 Sum_probs=114.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
+..+||||.||...++++-|.++|-+-|+|..|.|..++. +..+ ||||.|.++-++..|+..+|+..|.+..+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~--- 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR--- 81 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc---
Confidence 4578999999999999999999999999999999987754 4555 9999999999999999999999999988866
Q ss_pred CCCCcceecc----cCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 006370 228 EDNDTLFVGN----ICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (648)
Q Consensus 228 ~~~~~L~V~n----Lp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~ 297 (648)
+++.++ |...+|.+.+...|+.-+. +..+++..+. .++++.++|+++...-..-.++.....
T Consensus 82 ----~~r~G~shapld~r~~~ei~~~v~s~a~p--~~~~R~~~~~--d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 82 ----TLRCGNSHAPLDERVTEEILYEVFSQAGP--IEGVRIPTDN--DGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred ----ccccCCCcchhhhhcchhhheeeecccCC--CCCccccccc--cCCccCccchhhhhhhcCcHHhhhhcc
Confidence 445556 6778899999999999998 8888888874 588999999987765555555554443
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=3.1e-10 Score=124.06 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=125.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
....++||+||+..+.+.+|...|..+|.|..+.|.....+++.+|+|||.|...+++.+||...... +.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh--------
Confidence 35578999999999999999999999998888887767778999999999999999999999854443 334
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
+..|+|.|+|+..|.+.|+.++.++|. ++.++++... .|+.+|.|+|.|.+..++.+++.......+. ..
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~gn--~~~~~~vt~r--~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r----E~ 805 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTGN--VTSLRLVTVR--AGKPKGKARVDYNTEADASRKVASVDVAGKR----EN 805 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccCC--ccccchhhhh--ccccccceeccCCCcchhhhhcccchhhhhh----hc
Confidence 457999999999999999999999998 8888877763 8999999999999999999998876665552 44
Q ss_pred ceeeeccCC
Q 006370 308 TVKVAFAEP 316 (648)
Q Consensus 308 ~l~v~~a~~ 316 (648)
.+.++.+.|
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 455555443
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=6.5e-09 Score=78.64 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=48.8
Q ss_pred HHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 167 L~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
|.++|++||+|..|.+.... +++|||+|.+.++|.+|++.||+..+.|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68899999999999997653 68999999999999999999999999999987753
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.73 E-value=8.2e-09 Score=111.71 Aligned_cols=109 Identities=23% Similarity=0.354 Sum_probs=86.0
Q ss_pred hhHhhhhhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 138 ~~~~~~~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
+..+.......-++||||+.|+..+++.+|..+|+.||+|.+|.++. +++||||++....+|.+||.+|++..+
T Consensus 409 lP~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv 482 (894)
T KOG0132|consen 409 LPTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKV 482 (894)
T ss_pred CCCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccc
Confidence 33344445555789999999999999999999999999999999964 589999999999999999999999999
Q ss_pred eeeccCCCCCCCC-----------CcceecccCCCCcHHHHHHHHh
Q 006370 218 CGKRCGTAPSEDN-----------DTLFVGNICNTWTKEAIKQKLK 252 (648)
Q Consensus 218 ~G~~i~v~~~~~~-----------~~L~V~nLp~~~t~e~l~~~f~ 252 (648)
..+.|+|.++... ..|=|.-||+..-..+|+.+.+
T Consensus 483 ~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 483 ADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 9999988776431 2233555666644444555554
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=2e-08 Score=95.42 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=117.2
Q ss_pred CcceecccCCCCcHHH-H--HHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 231 DTLFVGNICNTWTKEA-I--KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~-l--~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
-.+++.++-..+..+- | ...|+.+-. +....++++. .+.-++++|+.|.....-.++-..-++..+ ...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~--L~ktk~v~~~--p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki----~~~ 168 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPS--LVKTKLVRDR--PQPIRPEAFESFKASDALLKAETEKEKKKI----GKP 168 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchh--hhhhhhhhcC--CCccCcccccCcchhhhhhhhccccccccc----cCc
Confidence 3445555555544443 2 556666554 5566666653 567788999999876666655544444433 122
Q ss_pred ceeeeccCCCCCCC---ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHH
Q 006370 308 TVKVAFAEPLREPD---PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (648)
Q Consensus 308 ~l~v~~a~~~~~~~---~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~ 384 (648)
.+++ +....... .+......+||.+.|..+++++-|-..|++|-.....+++++..|++++||+||.|.+..++.
T Consensus 169 ~VR~--a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 169 PVRL--AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ceee--ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 2332 22222222 223344579999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHhCCCeecCCeeEEE
Q 006370 385 ACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 385 ~Ai~~lng~~~~g~~i~v~ 403 (648)
.|+..|||+.++.+.|++.
T Consensus 247 rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHHHhhcccccccchhHhh
Confidence 9999999999999987664
No 126
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.64 E-value=4.9e-08 Score=105.88 Aligned_cols=78 Identities=17% Similarity=0.386 Sum_probs=71.6
Q ss_pred cccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
...+++|||+.|+..+++.+|..+|+.||.|.+|.++. ++|||||++....+|.+|+.+|++..|..+.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 34468999999999999999999999999999999864 488999999999999999999999999999999999
Q ss_pred Eeec
Q 006370 405 RARL 408 (648)
Q Consensus 405 ~~~~ 408 (648)
++..
T Consensus 492 a~g~ 495 (894)
T KOG0132|consen 492 AVGK 495 (894)
T ss_pred eccC
Confidence 7754
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=9.8e-08 Score=99.66 Aligned_cols=81 Identities=15% Similarity=0.427 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
-.+.|||.+|+..+.-.+|+.||++||.|+-++|+.+..+--.+.|+||++.+.++|.+||..|+...|+|+-|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999998777789999999999999999999999999999999987665
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
+
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.62 E-value=6.9e-08 Score=100.76 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=74.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
....|||.+|...+-..+|+.+|++||.|+-.+|+.+..+-.-++|+||++.+.++|.+||+.|+.+.|.|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999988777789999999999999999999999999999998887654
No 129
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.62 E-value=8.4e-08 Score=90.41 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=72.4
Q ss_pred ceeeeecCCCCCCCHHHHHH----hhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRD----QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..+|||.||...+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|..|+.+|+|..|.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 999999999998864 46789999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 006370 404 LRARLSNP 411 (648)
Q Consensus 404 ~~~~~~~~ 411 (648)
++...+.-
T Consensus 86 yA~s~sdi 93 (221)
T KOG4206|consen 86 YAKSDSDI 93 (221)
T ss_pred cccCccch
Confidence 87765543
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=5.5e-08 Score=90.04 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~-G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.....++|..||.-+-+..|..+|.+| |.|..+++.+++.||.|+|||||+|.+.+.|.-|.+.||+-+|.++.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 356789999999999999999999998 78999999999999999999999999999999999999999888886543
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=3.4e-08 Score=108.83 Aligned_cols=165 Identities=22% Similarity=0.381 Sum_probs=135.9
Q ss_pred hhhhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 142 ~~~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
.+.......+|||++||...+++.+|+-.|..+|.|..|.|.+- .-+.-.-|+||.|.+...+-.|+..+.+..|..-.
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 33445557899999999999999999999999999999999553 23556779999999999999999988887765444
Q ss_pred cCCC----CCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 006370 222 CGTA----PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (648)
Q Consensus 222 i~v~----~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~ 297 (648)
+.+. .+...+.|++++|..-+....|...|..||. |..|.+-.. .-||+|+|.+...|++|+..|.+
T Consensus 443 ~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hg-------q~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 443 HRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHG-------QPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ccccccccccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccC-------CcceeeecccCccchhhHHHHhc
Confidence 4433 4456789999999999999999999999999 888777543 25899999999999999999888
Q ss_pred CCeeeCCCCcceeeeccCCCC
Q 006370 298 PDVVFGHPERTVKVAFAEPLR 318 (648)
Q Consensus 298 ~~~~~g~~~~~l~v~~a~~~~ 318 (648)
..+ |...+.+.|.++.+..
T Consensus 514 ap~--G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 514 APL--GGPPRRLRVDLASPPG 532 (975)
T ss_pred CcC--CCCCcccccccccCCC
Confidence 654 5567889999986543
No 132
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=3.1e-08 Score=92.01 Aligned_cols=138 Identities=16% Similarity=0.249 Sum_probs=112.9
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
+...++|||.|+...++++-|.++|-+.|. |..+.|.... .+..+ ||||.|.++....-|+..+|+..+. +
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGP--V~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~----~ 76 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGP--VYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDLE----E 76 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCc--eEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchhc----c
Confidence 445689999999999999999999999999 9999988774 55555 9999999999999999999998874 5
Q ss_pred cceeeeccCCCCCCCccccccceeeeecC----CCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDG----VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~n----Lp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~ 382 (648)
..+.+ +++.++ |...++.+.+...|+.-|.|..+++..++. ++++.++||.+.-..+
T Consensus 77 ~e~q~------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 77 DEEQR------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCA 137 (267)
T ss_pred chhhc------------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhc
Confidence 55544 344444 566788899999999999999999988865 7788899998877766
Q ss_pred HHHHHHHhCC
Q 006370 383 AVACINAINN 392 (648)
Q Consensus 383 A~~Ai~~lng 392 (648)
.-.++....+
T Consensus 138 ~P~~~~~y~~ 147 (267)
T KOG4454|consen 138 VPFALDLYQG 147 (267)
T ss_pred CcHHhhhhcc
Confidence 6666655444
No 133
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.51 E-value=8e-06 Score=80.99 Aligned_cols=76 Identities=9% Similarity=0.184 Sum_probs=67.3
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccC--cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++||+||-|++|++||.+.....| .|..+++..++.+|.++|||+|...+..+.++.++-|-.+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35899999999999999999998877 56777888899999999999999999999999999999999999765443
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=8.8e-08 Score=105.65 Aligned_cols=151 Identities=18% Similarity=0.294 Sum_probs=124.5
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l 309 (648)
+.+||++||...+++.+|+..|..+|. |.+|.|.... -++-.-|+||.|.+...+-.|...+.+..|..+ .+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gk--ve~VDiKtP~--~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g----~~ 443 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGK--VEEVDIKTPH--IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG----TH 443 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcc--ccccccccCC--CCcccchhhhhhhccccCcccchhhcCCccccC----cc
Confidence 789999999999999999999999998 9999887753 344556899999999999999988888877422 33
Q ss_pred eeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 006370 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (648)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ 389 (648)
++.+..+ .....+.|+|++|+.++....|...|..||.|..|.+-. ..-||+|.|++...|++|+..
T Consensus 444 r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 444 RIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHH
Confidence 3333332 122357999999999999999999999999999988732 244999999999999999999
Q ss_pred hCCCeecCCeeE
Q 006370 390 INNKEFSDGNSK 401 (648)
Q Consensus 390 lng~~~~g~~i~ 401 (648)
|-|..|++....
T Consensus 511 ~rgap~G~P~~r 522 (975)
T KOG0112|consen 511 MRGAPLGGPPRR 522 (975)
T ss_pred HhcCcCCCCCcc
Confidence 999999986544
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=2.2e-07 Score=92.24 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=67.7
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHh-cCCCeEeeeccC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE-MKNPVICGKRCG 223 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~-l~~~~l~G~~i~ 223 (648)
.+.....||||++|-..+++.+|+++|-+||+|..|.++.. +++|||+|.+.++|++|..+ ++..+|.|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34446789999999999999999999999999999999754 66999999999999998877 466678899888
Q ss_pred CCCCCC
Q 006370 224 TAPSED 229 (648)
Q Consensus 224 v~~~~~ 229 (648)
|.+...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 876654
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=4.1e-07 Score=90.40 Aligned_cols=74 Identities=27% Similarity=0.426 Sum_probs=64.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH-hCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA-INNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~-lng~~~~g~~i~v~~~ 405 (648)
..++|||++|-..+++.+|+++|.+||.|..|.|+.. +++|||+|.+.++|+.|.++ +|...|+|.+|+|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4579999999999999999999999999999999765 56999999999999888764 5777889999888875
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 301 ~ 301 (377)
T KOG0153|consen 301 R 301 (377)
T ss_pred C
Confidence 3
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=2.3e-06 Score=83.57 Aligned_cols=81 Identities=11% Similarity=0.245 Sum_probs=74.1
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
..+|.|.||+..++.+||+++|..||.+..+.|.++ ..|.+.|.|-|.|...++|.+|++.+||..++|+.+++.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 468999999999999999999999999999999888 5789999999999999999999999999999999988887654
Q ss_pred cC
Q 006370 408 LS 409 (648)
Q Consensus 408 ~~ 409 (648)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=2.7e-07 Score=87.81 Aligned_cols=154 Identities=19% Similarity=0.313 Sum_probs=117.7
Q ss_pred CEEEEcCCCCCCCHHH-H--HHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC---
Q 006370 151 HEIFIGGLDRDATQED-V--RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT--- 224 (648)
Q Consensus 151 ~tlfV~nLp~~~te~d-L--~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v--- 224 (648)
..+|+.|+-.++-.+- | ...|+.+-.+....++++ ..+..++++|+.|.....-.++-..-+++.+.-.+|++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4566777766665554 3 566766666666666665 34677899999999877777776655555554443432
Q ss_pred ---------CCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHh
Q 006370 225 ---------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (648)
Q Consensus 225 ---------~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l 295 (648)
.+..+.-+||.+.|..+++.+-|...|.+|-. ....+++++. .+++++||+||.|.+..++..|+++|
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps--f~~akviRdk-RTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS--FQKAKVIRDK-RTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccc--hhhccccccc-cccccccceeeeecCHHHHHHHHHhh
Confidence 34456789999999999999999999999987 8888899984 69999999999999999999999999
Q ss_pred CCCCeeeCCCCcceeee
Q 006370 296 QKPDVVFGHPERTVKVA 312 (648)
Q Consensus 296 ~~~~~~~g~~~~~l~v~ 312 (648)
++.-+ ..+.|++.
T Consensus 253 ~gkyV----gsrpiklR 265 (290)
T KOG0226|consen 253 NGKYV----GSRPIKLR 265 (290)
T ss_pred ccccc----ccchhHhh
Confidence 99877 35666544
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.33 E-value=1.5e-06 Score=85.15 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..+.+||+|+.+.+|.+.|..+|+.||.|..|.|+.++..++++||+||+|.+.+.+..|+. ||+..|.++.+.|++..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45789999999999999999999999999999999999999999999999999999999998 99999999999998765
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 43
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.33 E-value=8e-07 Score=86.75 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...+|.|.||++.++++||+++|..||.++.+.|..+ .+|.+.|+|-|.|...++|..|++.+++..|.|+.+.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 4578999999999999999999999999999988888 46999999999999999999999999999999998765443
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.31 E-value=1.5e-07 Score=95.20 Aligned_cols=153 Identities=17% Similarity=0.253 Sum_probs=120.8
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
++||++||...++..+|..+|...-. ....-.|+. .||+||.+.+...|.+|++.+++..-+ .++.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~el---qGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVEL---QGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhh---cCceee
Confidence 47899999999999999999976532 123333444 389999999999999999999987654 467777
Q ss_pred eeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006370 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (648)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (648)
+..+.+++. .++++.|+|+|...-|+.|..+..+||.|..|.++... .-.-..-|+|.+.+.+..||.+|
T Consensus 70 ~~~sv~kkq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 70 VEHSVPKKQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred ccchhhHHH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhh
Confidence 777666543 24569999999999999999999999999998774321 11223457889999999999999
Q ss_pred CCCeecCCeeEEEEE
Q 006370 391 NNKEFSDGNSKVKLR 405 (648)
Q Consensus 391 ng~~~~g~~i~v~~~ 405 (648)
||..+....+++.+-
T Consensus 140 ~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 140 NGPQLENQHLKVGYI 154 (584)
T ss_pred cchHhhhhhhhcccC
Confidence 999999988777654
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.29 E-value=4.3e-06 Score=69.83 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=63.1
Q ss_pred eeeeecCCCCCCCHHHHHHhhcc--cCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
++|.|+|||...|.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|.+-...++|+.+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 68999999999999999998876 3678889999999999999999999999999999999999998863
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.26 E-value=1.2e-06 Score=92.40 Aligned_cols=73 Identities=25% Similarity=0.421 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
...+|||+|||+++|+.+|+++|++||+|+...|....-.+++..||||+|.+.++++.||.+. ...|.+++|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl 359 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKL 359 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeE
Confidence 4567999999999999999999999999999999775433555599999999999999999863 444444443
No 144
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.26 E-value=4.4e-06 Score=84.06 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=73.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
...+|||.+||..++.++|.++|.++|.|. .|.|.+++.|++++|-|.|+|++...|++||..++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 346899999999999999999999999883 577888999999999999999999999999999999999998
Q ss_pred eeEEEEEeec
Q 006370 399 NSKVKLRARL 408 (648)
Q Consensus 399 ~i~v~~~~~~ 408 (648)
.|+|.++...
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 8777765443
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.25 E-value=7.9e-07 Score=89.42 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=125.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC---CCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~---tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
...|.|.||.+.+|.+++..||.-+|.|.++.|+-+.. ......+|||.|.+...+..|.. |.+.++.+..|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34899999999999999999999999999999976432 23457799999999999888876 677777776554433
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
.. ..+-.... +|..++...+.--.|..+ | |.|.+.. +. ..++..
T Consensus 86 ~~-----------~~~~p~r~--af~~l~~~navprll~pd--------g---~Lp~~~~-----lt-------~~nh~p 129 (479)
T KOG4676|consen 86 YG-----------DEVIPDRF--AFVELADQNAVPRLLPPD--------G---VLPGDRP-----LT-------KINHSP 129 (479)
T ss_pred cC-----------CCCCccHH--HHHhcCcccccccccCCC--------C---ccCCCCc-----cc-------cccCCc
Confidence 22 11222221 455444311222122111 0 1111100 00 000000
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
..|-..-+.+.......+..-..+|.|.+|+..+...++.+.|..+|.|....+.- +...-+|.|+|........|
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHH
Confidence 11100000110000111111236799999999999999999999999988777643 23345788999998888888
Q ss_pred HHHhCCCeecCCe
Q 006370 387 INAINNKEFSDGN 399 (648)
Q Consensus 387 i~~lng~~~~g~~ 399 (648)
+. ++|..+.-..
T Consensus 206 lr-~~gre~k~qh 217 (479)
T KOG4676|consen 206 LR-SHGRERKRQH 217 (479)
T ss_pred HH-hcchhhhhhh
Confidence 76 5677776433
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.22 E-value=1.1e-06 Score=86.04 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=75.1
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
+.......|||+|+.+.+|.++|..+|+.||.|..|.|.++..+++++|||||+|.+.+.+..||. |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344577899999999999999999999999999999999999999999999999999999999999 9999999998876
Q ss_pred CCC
Q 006370 225 APS 227 (648)
Q Consensus 225 ~~~ 227 (648)
...
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 544
No 147
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.16 E-value=1.6e-06 Score=82.87 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC--------CCCc----ceEEEEEechhhHHHHHHhcCCCe
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST--------NRNK----GYAFVKFANKEHAKRALTEMKNPV 216 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~t--------g~~k----G~afV~F~~~e~A~~Al~~l~~~~ 216 (648)
....|||+|||+.+...-|+++|++||.|-.|.|.....+ |.+. --++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999999999999999999999766544 2222 237899999999999999999999
Q ss_pred Eeeec
Q 006370 217 ICGKR 221 (648)
Q Consensus 217 l~G~~ 221 (648)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99885
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.13 E-value=9.4e-06 Score=67.83 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=60.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 151 HEIFIGGLDRDATQEDVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~--~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
+||.|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+.+.|.+..+.+++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 69999999999999999988875 367778889999999999999999999999999999998876653
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.91 E-value=2.8e-05 Score=77.62 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=70.8
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (648)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++. .|+.+|=|+++|--.+++.-||.-|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45799999999999999999999999873 47888874 5999999999999999999999999999999999
Q ss_pred eEEEEEee
Q 006370 400 SKVKLRAR 407 (648)
Q Consensus 400 i~v~~~~~ 407 (648)
|+|+.+..
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 88887643
No 150
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=5.9e-06 Score=87.43 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=63.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
...+|+|-|||..++.++|..+|+.||+|..|..- -..+|.+||+|-+..+|++|+++||+.+|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34689999999999999999999999999997653 34688999999999999999999999999999977
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=3.1e-05 Score=83.74 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST---NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
..+.|||+||+..++++.|...|..||+|..|+|+.-+.. -+.+.|+||.|-+..+|++||+.|++..+....+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4578999999999999999999999999999999864322 3567899999999999999999999999988887766
Q ss_pred CC
Q 006370 226 PS 227 (648)
Q Consensus 226 ~~ 227 (648)
+.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 55
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=6.7e-05 Score=59.63 Aligned_cols=67 Identities=12% Similarity=0.294 Sum_probs=47.0
Q ss_pred eeeeecCCCCCCCHH----HHHHhhcccC-cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 329 KTVFLDGVPPHWKEN----QIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~----~l~~~f~~~G-~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..|+|.|||...+.. -|++++..|| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999987764 5667777886 555552 3579999999999999999999999999999888
Q ss_pred EE
Q 006370 404 LR 405 (648)
Q Consensus 404 ~~ 405 (648)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 75
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=2.8e-05 Score=66.63 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=44.3
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----eecCCeeEEE
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK-----EFSDGNSKVK 403 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~-----~~~g~~i~v~ 403 (648)
..|+|.++...++.++|+++|++||.|.+|.+.+.. -.|+|.|.+.++|+.|+.++.-. .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468899999999999999999999999999997653 26999999999999999877544 5566554444
Q ss_pred E
Q 006370 404 L 404 (648)
Q Consensus 404 ~ 404 (648)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=3.5e-06 Score=85.57 Aligned_cols=147 Identities=24% Similarity=0.366 Sum_probs=113.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCC-eEeeeccCCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGKRCGTAPSE 228 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~-~l~G~~i~v~~~~ 228 (648)
..|||+||...++..+|..+|...-. ...-.++ -.|||||.+.+...|.+|++.++++ .+.|+++.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999976411 1111111 2579999999999999999999875 5889998887654
Q ss_pred C----CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006370 229 D----NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (648)
Q Consensus 229 ~----~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~ 304 (648)
. ++++-|.|+|....++.|..++.+||. ++.|..+.... -.-..-|+|...+.++.|+.+|++..+.
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~--ve~~eqvnt~~----etavvnvty~~~~~~~~ai~kl~g~Q~e--- 145 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT--VENCEQVNTDS----ETAVVNVTYSAQQQHRQAIHKLNGPQLE--- 145 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCC--HhHhhhhccch----HHHHHHHHHHHHHHHHHHHHhhcchHhh---
Confidence 3 678999999999999999999999998 88887543211 1112236888999999999999998884
Q ss_pred CCcceeeecc
Q 006370 305 PERTVKVAFA 314 (648)
Q Consensus 305 ~~~~l~v~~a 314 (648)
...+++.+-
T Consensus 146 -n~~~k~~Yi 154 (584)
T KOG2193|consen 146 -NQHLKVGYI 154 (584)
T ss_pred -hhhhhcccC
Confidence 566666553
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.76 E-value=2.4e-05 Score=78.83 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=75.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
+....+|||-+||..+++++|.++|.++|.|. .|+|.+++.|++.|+-|.|.|.+...|+.|+.-+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33567999999999999999999999999873 4788899999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCC
Q 006370 219 GKRCGTAPSEDND 231 (648)
Q Consensus 219 G~~i~v~~~~~~~ 231 (648)
+..|+|..+...+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9888877665433
No 156
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.64 E-value=8.2e-05 Score=80.62 Aligned_cols=82 Identities=11% Similarity=0.267 Sum_probs=72.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~---~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
.++.|||+||+..++++.|...|..||.|..|+|+.-+ ...+.+-++||-|-+..+|++|+..|+|..|....+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46899999999999999999999999999999997543 345567799999999999999999999999999998888
Q ss_pred EEeec
Q 006370 404 LRARL 408 (648)
Q Consensus 404 ~~~~~ 408 (648)
|....
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 86443
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.56 E-value=0.00014 Score=57.90 Aligned_cols=69 Identities=22% Similarity=0.445 Sum_probs=46.7
Q ss_pred CEEEEcCCCCCCCHHHHH----HHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 151 HEIFIGGLDRDATQEDVR----KVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~----~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
..|+|.|||.+.....|+ .++..+| .|..| +.+.|+|.|.+.+.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999887765 4555676 66655 13679999999999999999999999999988877
Q ss_pred CCCC
Q 006370 226 PSED 229 (648)
Q Consensus 226 ~~~~ 229 (648)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 6643
No 158
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.52 E-value=0.0005 Score=76.90 Aligned_cols=15 Identities=47% Similarity=0.487 Sum_probs=6.8
Q ss_pred CCCcceEEEEEecCH
Q 006370 271 EGLSRGFAFVMFSCH 285 (648)
Q Consensus 271 ~g~srG~afV~f~~~ 285 (648)
.|+.++|+--.|.++
T Consensus 898 ~g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 898 SGTQRKFAGNKFSDH 912 (1282)
T ss_pred ccchhhccccccccc
Confidence 344445544444443
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.29 E-value=0.00045 Score=59.19 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=39.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (648)
+.|+|.++...++-++|+++|++||.|..|.+... ...|||.|.+.+.|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHh
Confidence 57899999999999999999999999999988654 33699999999999999998653
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.00034 Score=69.44 Aligned_cols=103 Identities=17% Similarity=0.400 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHH------HHHhhccCCeEEEEEEecCCC-CCCcceE--EEEEechhhHHHHHHhcCCCeEee
Q 006370 149 KEHEIFIGGLDRDATQEDV------RKVFERIGEVIEVRLHKNFST-NRNKGYA--FVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL------~~~F~~~G~v~~v~i~~d~~t-g~~kG~a--fV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
...-|||-+|+..+..+++ .++|.+||.|..|.|.+...+ ....+.+ ||+|.+.++|.+||.+.++..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567899999998887773 479999999998887654311 1222334 999999999999999999999999
Q ss_pred eccCCCCC--------------CCCCcceecccC---CCCcHHHHHHHH
Q 006370 220 KRCGTAPS--------------EDNDTLFVGNIC---NTWTKEAIKQKL 251 (648)
Q Consensus 220 ~~i~v~~~--------------~~~~~L~V~nLp---~~~t~e~l~~~f 251 (648)
+.|+...- ....++|+.--- -..|+++|...-
T Consensus 193 r~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred ceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 98876443 334445543222 236777776543
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.22 E-value=0.00024 Score=70.80 Aligned_cols=76 Identities=18% Similarity=0.371 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
..-.+||+||-|.+|++||.+.+...| .|.+++++.++..|.+||||+|...+..++++.++.|-.+.|+|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 446899999999999999999998877 6788999999999999999999999999999999999999999875433
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.16 E-value=0.00025 Score=72.02 Aligned_cols=80 Identities=30% Similarity=0.506 Sum_probs=72.1
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIF-IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlf-V~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++| |.||++.+++++|..+|..+|.|+.+++..+..++..+|+|||.|.+...+.++|.. +...+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999999999999999999999999999999999987 788888888877665
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 43
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.99 E-value=0.0016 Score=48.18 Aligned_cols=52 Identities=21% Similarity=0.532 Sum_probs=43.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHH
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al 209 (648)
+.|-|.+.+.+..+ .|..+|.+||+|+.+.+. ....+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 57889999987775 456699999999998884 33568999999999999986
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.97 E-value=0.0017 Score=64.62 Aligned_cols=80 Identities=21% Similarity=0.443 Sum_probs=62.0
Q ss_pred cceeeeecCCCCCCCHHH----H--HHhhcccCcEEEEEEeecCCCCCc-cc--EEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 327 HVKTVFLDGVPPHWKENQ----I--RDQIKGYGDVIRIVLARNMSTAKR-KD--YGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~----l--~~~f~~~G~v~~v~i~~d~~~~~~-~G--~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
+.+-+||-+|+..+-.++ | .++|.+||.|..|.|-+......+ .+ -.||+|.+.++|.+||.+++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 346789999998876655 3 378999999999988654321111 12 24999999999999999999999999
Q ss_pred CeeEEEEEe
Q 006370 398 GNSKVKLRA 406 (648)
Q Consensus 398 ~~i~v~~~~ 406 (648)
+.|++.+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998743
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.92 E-value=0.016 Score=59.88 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=55.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeec---CCC--CC--------cccEEEEEeCCHHHHHHHHHHhCCC
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN---MST--AK--------RKDYGFIDFSTHEAAVACINAINNK 393 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d---~~~--~~--------~~G~afV~F~~~~~A~~Ai~~lng~ 393 (648)
+.++|.+-|||.+-.-+-|.++|..+|.|..|+|..- ... +. .+-+|||+|+..+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4679999999999888999999999999999999765 221 11 1557999999999999999877644
Q ss_pred e
Q 006370 394 E 394 (648)
Q Consensus 394 ~ 394 (648)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.0012 Score=63.72 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=85.0
Q ss_pred hHHHHHHhcCCCeEeeeccCCCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEec
Q 006370 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283 (648)
Q Consensus 204 ~A~~Al~~l~~~~l~G~~i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~ 283 (648)
-|..|-.+|++....|+.+.|..+.. ..|+|.||..-+..+.|...|+.||. |....++-|. .++..+-++|.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~--~e~av~~vD~--r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP--IERAVAKVDD--RGKPTREGIVEFA 80 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc--cchheeeecc--cccccccchhhhh
Confidence 35667777899999999999999988 99999999999999999999999998 8877777663 6788899999999
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCcceee
Q 006370 284 CHVDAMAAYKRLQKPDVVFGHPERTVKV 311 (648)
Q Consensus 284 ~~~~A~~A~~~l~~~~~~~g~~~~~l~v 311 (648)
..-.|.+|+...+..-+.....+++.-|
T Consensus 81 ~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 81 KKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred cchhHHHHHHHhccCccccCCCCCccCC
Confidence 9999999999876555543333444443
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.83 E-value=0.0023 Score=61.75 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCC
Q 006370 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (648)
Q Consensus 286 ~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~ 365 (648)
.-|..|...|.+... .++.+.|.|+.. ..|+|.||..-++-+.|...|+.||.|....+..| .
T Consensus 5 t~ae~ak~eLd~~~~----~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~ 67 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP----KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-D 67 (275)
T ss_pred cHHHHHHHhcCCCCC----CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-c
Confidence 346666677888766 589999999864 58999999999999999999999999988877777 4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 366 ~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
.++..+-++|+|...-.|.+|+..++-.-|.+
T Consensus 68 r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 68 RGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred cccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 57788899999999999999998876555544
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.81 E-value=0.0028 Score=62.05 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=51.2
Q ss_pred HHHHHHhhcccCcEEEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 342 ENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 342 ~~~l~~~f~~~G~v~~v~i~~d~~~~~~-~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
++++++.|.+||.|..|.|......-.. .--.||+|+..++|.+|+-.|||+.|+|+.+...|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4678999999999999998766432111 22479999999999999999999999999877655
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.81 E-value=0.0011 Score=68.14 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=57.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec---CCCCC----------CcceEEEEEechhhHHHHHHhcCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN---FSTNR----------NKGYAFVKFANKEHAKRALTEMKN 214 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d---~~tg~----------~kG~afV~F~~~e~A~~Al~~l~~ 214 (648)
.++||.+-|||.+-.-+.|.++|..+|.|..|+||.- +.+.+ .+-+|+|+|...+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 7899999999999999999999999999999999875 33321 256899999999999999997753
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.013 Score=62.94 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=76.3
Q ss_pred hccCCCCEEEEcCCCC-CCCHHHHHHHhhcc----CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 145 RKIKKEHEIFIGGLDR-DATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~-~~te~dL~~~F~~~----G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
......++|-|-||.| .+.-.+|.-+|+.| |.|.+|.|+... |- ...|....+.|
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FG--------keRM~eEeV~G 228 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FG--------KERMKEEEVHG 228 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hh--------HHHhhhhcccC
Confidence 3455789999999999 46778999999886 589999997541 11 12233334444
Q ss_pred eccCCCCC-CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 006370 220 KRCGTAPS-EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (648)
Q Consensus 220 ~~i~v~~~-~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~ 298 (648)
-++.+... .....- .......++-++..+.+|+. ..++ --||.|+|.+.+.|.++.....|.
T Consensus 229 P~~el~~~~e~~~~s---~sD~ee~~~~~~~kLR~Yq~---~rLk-----------YYyAVvecDsi~tA~~vYe~CDG~ 291 (650)
T KOG2318|consen 229 PPKELFKPVEEYKES---ESDDEEEEDVDREKLRQYQL---NRLK-----------YYYAVVECDSIETAKAVYEECDGI 291 (650)
T ss_pred ChhhhccccccCccc---ccchhhhhhHHHHHHHHHHh---hhhe-----------eEEEEEEecCchHHHHHHHhcCcc
Confidence 43322111 000000 01112222334666666652 2222 257999999999999999999987
Q ss_pred CeeeCCCCcceeeec
Q 006370 299 DVVFGHPERTVKVAF 313 (648)
Q Consensus 299 ~~~~g~~~~~l~v~~ 313 (648)
++- ..+..|.+.|
T Consensus 292 EfE--sS~~~~DLRF 304 (650)
T KOG2318|consen 292 EFE--SSANKLDLRF 304 (650)
T ss_pred eec--cccceeeeee
Confidence 763 2344444444
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0021 Score=68.29 Aligned_cols=69 Identities=16% Similarity=0.353 Sum_probs=58.5
Q ss_pred eeeeecCCCCCC------CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 329 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 329 ~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
.+|+|.|+|--- -..-|..+|+++|.|+.+.++.+..+| .+||.|++|.+..+|+.|+..|||+.|.-.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 578899998632 234577889999999999999886655 899999999999999999999999998743
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0064 Score=64.80 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=58.2
Q ss_pred CCCCEEEEcCCCC--CCCHH----HHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 148 KKEHEIFIGGLDR--DATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 148 ~~~~tlfV~nLp~--~~te~----dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
.-...|+|.|+|- .+..+ -|.++|+++|+|+.+.+..+..+| ++|+.|++|.+..+|+.|++.|||..|.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec
Confidence 4567999999995 22222 356789999999999999886655 9999999999999999999999987664
No 173
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.63 E-value=0.0034 Score=46.43 Aligned_cols=52 Identities=12% Similarity=0.496 Sum_probs=41.3
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai 387 (648)
+.|.|.+.+.... +.|..+|.+||.|+.+.+.. ..-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4677888887665 44556888999999998862 2348999999999999985
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.61 E-value=0.0022 Score=68.65 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=55.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~-~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
....++.|+|.||---.|.-+|+.++. ..|.|++.+| | +-+..|||.|.+.++|...+.+|||..+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhcccc
Confidence 344678999999999999999999999 5677777744 3 3466799999999999999999998654
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.52 E-value=0.0012 Score=63.92 Aligned_cols=63 Identities=16% Similarity=0.365 Sum_probs=52.5
Q ss_pred HHHHHhhc-ccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 343 NQIRDQIK-GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 343 ~~l~~~f~-~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
++|...|+ +||+|+.+.|..+. .-.-+|-++|.|...++|++|++.||+..|.|+.|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555566 89999999776542 34468889999999999999999999999999999998854
No 176
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.34 E-value=0.029 Score=56.36 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.6
Q ss_pred HHHHhh
Q 006370 344 QIRDQI 349 (648)
Q Consensus 344 ~l~~~f 349 (648)
+|...|
T Consensus 244 ei~~~~ 249 (465)
T KOG3973|consen 244 EIQSIL 249 (465)
T ss_pred HHHHHH
Confidence 444444
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.33 E-value=0.0031 Score=60.85 Aligned_cols=72 Identities=21% Similarity=0.421 Sum_probs=60.9
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCCee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--------AKRK----DYGFIDFSTHEAAVACINAINNKEF 395 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~--------~~~~----G~afV~F~~~~~A~~Ai~~lng~~~ 395 (648)
+-.|||++||+.+.-..|+++|++||.|-.|.+.....+ +.+. --|.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999988665433 2222 2367999999999999999999999
Q ss_pred cCCe
Q 006370 396 SDGN 399 (648)
Q Consensus 396 ~g~~ 399 (648)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 178
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.02 E-value=0.022 Score=64.82 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 190 RNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 190 ~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
.-+||-||+=..+.++..||+-+-+..+.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 46999999999999999999987654433
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.021 Score=51.22 Aligned_cols=55 Identities=15% Similarity=0.440 Sum_probs=45.7
Q ss_pred HHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 343 ~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+|.+.|.+||.|+-|+++-+ .-+|+|.+-+.|.+|+. |+|.+|.|+.|+|+++.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 467888999999988888655 47999999999999986 99999999999998854
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.00 E-value=0.029 Score=47.39 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=48.7
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEe-ecC------CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNM------STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~-~d~------~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (648)
.+.|.|=+.|.. ....|.++|++||.|....-+ ++. .......+..|+|.++.+|.+||. .||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 346788888877 556788999999999877511 100 011235589999999999999997 69999988755
Q ss_pred E
Q 006370 401 K 401 (648)
Q Consensus 401 ~ 401 (648)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.85 E-value=0.0027 Score=61.46 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=49.6
Q ss_pred HHHHHHhh-ccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 165 EDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 165 ~dL~~~F~-~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
++|...|+ +||+|+.+.|+.+. .-...|-+||.|...++|++|+..||+..+.|++|....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 34444445 89999999887663 346789999999999999999999999999999885443
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.49 E-value=0.046 Score=41.56 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=44.6
Q ss_pred ceeeeecCCCCCCCHHHHHHhhccc---CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (648)
...|+|+++. +++.++|+.+|..| .....|.++-|. -|-|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3589999984 68899999999998 134567777774 3899999999999999765
No 183
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.31 E-value=0.043 Score=46.33 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=48.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecC-------CCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-------STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~-------~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
....|.|-+.|... -..|..+|++||.|.+..-+... ..-.......|+|.+..+|.+||. .|+.+|.|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45678999999884 45788999999999877511000 001235688999999999999998 4888887653
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.97 E-value=0.055 Score=53.30 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=49.9
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCCCC-cceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 164 QEDVRKVFERIGEVIEVRLHKNFSTNRN-KGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 164 e~dL~~~F~~~G~v~~v~i~~d~~tg~~-kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
+.++++-+.+||.|..|.|...+..-.. ---.||+|...++|.+|+-.||+..|.|+.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 4567888999999999999877543222 234899999999999999999999999997654
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.96 E-value=0.03 Score=57.28 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=61.4
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~---~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..|.|.||.+++|.++|+.+|.-.|.|..+.|+.+.. .....-.|||.|.+...+..|-. |.++.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4789999999999999999999999999999876422 23345589999999999888864 7788888877666543
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.71 E-value=0.046 Score=49.02 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=51.2
Q ss_pred CCCEEEEcCCC-----CCCCHH----HHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 149 KEHEIFIGGLD-----RDATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 149 ~~~tlfV~nLp-----~~~te~----dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
...||.|.=+. ...-.+ +|.+.|.+||+|+-|+++-+ .-+|+|.+-++|.+||. +++..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 45677777555 112222 56778899999998888754 48999999999999998 79999999
Q ss_pred eccCCCCC
Q 006370 220 KRCGTAPS 227 (648)
Q Consensus 220 ~~i~v~~~ 227 (648)
+.|.|...
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 98766443
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.00 E-value=0.19 Score=40.30 Aligned_cols=55 Identities=20% Similarity=0.457 Sum_probs=40.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (648)
....+|. +|..+...||.++|+.||.|.--.| -+ ..|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4455666 9999999999999999998854444 33 269999999999999998765
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.94 E-value=0.04 Score=59.35 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=58.1
Q ss_pred ccccceeeeecCCCCCCCHHHHHHhhcc-cCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC---Ce
Q 006370 324 IMAHVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD---GN 399 (648)
Q Consensus 324 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g---~~ 399 (648)
....++.|+|.||-..+|.-+|+.++.. +|.|+..+| |+ -+..|||.|.+.++|.+.+.+|||..+.. +.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445789999999999999999999984 666666633 32 34579999999999999999999987654 44
Q ss_pred eEEEE
Q 006370 400 SKVKL 404 (648)
Q Consensus 400 i~v~~ 404 (648)
|.+.|
T Consensus 514 L~adf 518 (718)
T KOG2416|consen 514 LIADF 518 (718)
T ss_pred eEeee
Confidence 44444
No 189
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.87 E-value=0.55 Score=53.78 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred CCCHHHHHHhhcccCcE-----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 339 HWKENQIRDQIKGYGDV-----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 339 ~~t~~~l~~~f~~~G~v-----~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.++..+|..++..-+.| -.|.|..+ |.||+-.. ..|...+..|++..+.|+.|.|+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 57777777777655433 44566444 78888764 4577888999999999999887764
No 190
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.56 E-value=0.04 Score=57.73 Aligned_cols=12 Identities=0% Similarity=-0.058 Sum_probs=8.0
Q ss_pred ccchhccccchh
Q 006370 29 PALVEVAKHNDI 40 (648)
Q Consensus 29 ~~~vd~a~~k~~ 40 (648)
+|.|+-.+.|..
T Consensus 25 KlTi~DtlkKE~ 36 (458)
T PF10446_consen 25 KLTINDTLKKEN 36 (458)
T ss_pred cccHHHHHHHHH
Confidence 677777766653
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.04 E-value=0.41 Score=36.42 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=42.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~----G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (648)
..|+|+++. +++.++|+.+|..| + ...|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 579999985 57788999999998 4 3466666553 4899999999999999865
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.76 E-value=0.14 Score=48.38 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEEecCCC--CCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFER-IGEV---IEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~-~G~v---~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
....|.|++||+.+|++++.+.++. ++.. ..+.-.....+ -..-.-|||.|.+.+++...+..+++..+....
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4569999999999999999987776 6655 34432222111 123445999999999999999999998876554
No 193
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=92.70 E-value=0.19 Score=57.63 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=17.9
Q ss_pred cceEEEEEecCHHHHHHHHHHhCC
Q 006370 274 SRGFAFVMFSCHVDAMAAYKRLQK 297 (648)
Q Consensus 274 srG~afV~f~~~~~A~~A~~~l~~ 297 (648)
-+||.||+-.....+..|++.+.+
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~n 232 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRN 232 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhh
Confidence 468888888888788888776554
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.52 E-value=0.31 Score=52.31 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=56.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcc--cCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeecCCeeEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 402 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v 402 (648)
..+.|.|+-||..+-.++|+.+|+. |-.++.|.+..+. --||+|++..+|+.|...|. -+.|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3477889999999999999999986 7788999886552 27999999999999987664 34566666555
Q ss_pred EEE
Q 006370 403 KLR 405 (648)
Q Consensus 403 ~~~ 405 (648)
.++
T Consensus 247 RIK 249 (684)
T KOG2591|consen 247 RIK 249 (684)
T ss_pred hhh
Confidence 553
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.49 E-value=0.42 Score=51.36 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=69.0
Q ss_pred hhHHHHHHhcCCCeEeeeccCCCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEe
Q 006370 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282 (648)
Q Consensus 203 e~A~~Al~~l~~~~l~G~~i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f 282 (648)
.-...+|..+.+..+..+-.+|.+....+.|+|+-||..+-.++|+.+|+.-....+.+|.+..+ .--||+|
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyITf 219 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYITF 219 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEEe
Confidence 33455666677788888888999999999999999999999999999998643323777777665 2479999
Q ss_pred cCHHHHHHHHHHhC
Q 006370 283 SCHVDAMAAYKRLQ 296 (648)
Q Consensus 283 ~~~~~A~~A~~~l~ 296 (648)
++..||+.|.+.|.
T Consensus 220 esd~DAQqAykylr 233 (684)
T KOG2591|consen 220 ESDTDAQQAYKYLR 233 (684)
T ss_pred ecchhHHHHHHHHH
Confidence 99999999988654
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.45 E-value=0.24 Score=46.78 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=47.0
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcc-cCcE---EEEE--EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKG-YGDV---IRIV--LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~-~G~v---~~v~--i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (648)
..+|.|++||+.+|++++.+.++. ++.. ..+. +.........-..|+|.|.+.+++..-+..++|+.|-+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 358999999999999999987776 5544 2332 1111111223456999999999999999999998776644
No 197
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.59 E-value=0.14 Score=60.30 Aligned_cols=14 Identities=7% Similarity=0.385 Sum_probs=10.7
Q ss_pred CCHHHHHHHhhccC
Q 006370 162 ATQEDVRKVFERIG 175 (648)
Q Consensus 162 ~te~dL~~~F~~~G 175 (648)
.|-++|.+++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36788999888764
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.58 E-value=0.13 Score=52.25 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEEecCC--CC-CCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 149 KEHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFS--TN-RNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~---~~F~~~G~v~~v~i~~d~~--tg-~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
..+-+||-+|+..+..+.+. +.|.+||.|..|.+.++.. .+ -..-.++|+|...++|..||...++.++.|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34668888899877666553 5899999999999988752 11 122248999999999999999999999999886
Q ss_pred CCCC
Q 006370 223 GTAP 226 (648)
Q Consensus 223 ~v~~ 226 (648)
+...
T Consensus 156 ka~~ 159 (327)
T KOG2068|consen 156 KASL 159 (327)
T ss_pred HHhh
Confidence 5443
No 199
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.24 E-value=0.35 Score=57.03 Aligned_cols=7 Identities=14% Similarity=0.596 Sum_probs=3.4
Q ss_pred HHHHhhc
Q 006370 167 VRKVFER 173 (648)
Q Consensus 167 L~~~F~~ 173 (648)
|.++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 4445554
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.08 E-value=0.55 Score=41.63 Aligned_cols=70 Identities=9% Similarity=0.186 Sum_probs=51.7
Q ss_pred eeeeecCCCCCC----CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 329 KTVFLDGVPPHW----KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 329 ~~l~v~nLp~~~----t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
.+|.|+=|..++ +-..|...++.||.|..|.+. .+-.|.|.|.+..+|-.|+.+++. ...|..+.|.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 456665554443 234455567789999999874 233699999999999999999876 67788888887
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 201
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.93 E-value=0.89 Score=36.63 Aligned_cols=54 Identities=17% Similarity=0.463 Sum_probs=40.2
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (648)
...+|. +|..+-..||.++|+.||.|. |.++.+. -|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 355555 999999999999999999876 4444442 59999999999999988876
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.85 E-value=1.9 Score=37.24 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=50.9
Q ss_pred eeeeecCCCCCCCHHHHHHhhccc-CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
..+.+-..|..++.++|..+.+.+ ..|..++|+++.. .++=-+.+.|.+.+.|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345555566667777787666665 4677889988742 255578899999999999999999999875
No 203
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=90.48 E-value=0.23 Score=52.28 Aligned_cols=8 Identities=25% Similarity=0.385 Sum_probs=3.5
Q ss_pred CEEEEcCC
Q 006370 151 HEIFIGGL 158 (648)
Q Consensus 151 ~tlfV~nL 158 (648)
-.+|.-..
T Consensus 122 ~~~WtP~~ 129 (458)
T PF10446_consen 122 YEFWTPGA 129 (458)
T ss_pred ceeecccc
Confidence 34454443
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.77 E-value=0.8 Score=43.46 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=45.5
Q ss_pred CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeecCCeeEEEEE
Q 006370 341 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKLR 405 (648)
Q Consensus 341 t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~~~ 405 (648)
..+.|+++|..++.+..+.+++.. +-..|.|.+.++|.+|...|+ +..|.|..++|.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 457899999999988888776653 358999999999999999999 99999999888876
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.97 E-value=0.28 Score=51.73 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDA-TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~-te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
+.+.|-|.-+|+.+ |-.+|..+|.+||.|..|.+-. +.-.|.|+|.+..+|-.|.. .++..|+++.|++-+.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 45667777777755 5688999999999999998732 24469999999999977776 6788999998877655
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
.++
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 543
No 206
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=86.37 E-value=1.9 Score=50.94 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=12.4
Q ss_pred EEcCCCCCCCHHHHHHHhhc
Q 006370 154 FIGGLDRDATQEDVRKVFER 173 (648)
Q Consensus 154 fV~nLp~~~te~dL~~~F~~ 173 (648)
+.-+||.+...-+|..+.++
T Consensus 1445 v~~~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1445 VELKLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEEecCCCcchHHHHHHHH
Confidence 34467777666666666554
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.84 E-value=0.59 Score=49.43 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=58.0
Q ss_pred ceeeeecCCCCCC-CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 328 VKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 328 ~~~l~v~nLp~~~-t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+.|-+.-+|+.+ |-++|...|.+||.|..|.|-.. .--|.|+|.+..+|-.|.. .++..|+++-|+|.|..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 4456666667764 56899999999999999988554 2249999999999966653 78999999999999865
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.48 E-value=0.5 Score=52.11 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=61.6
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
....+|||+||...+..+-++.+...||.|..+..+. |||..|..+..+..|+..|+-..+++..+.+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3457999999999999999999999999888776643 899999999999999999999999998876665
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.89 E-value=3 Score=32.27 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 339 ~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
.++-++|+..+++|+- .+|..+ ..|| ||.|.+..+|++|....+++.+..-.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5778999999999952 344444 2444 8999999999999999999998875543
No 210
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.82 E-value=4.9 Score=41.75 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=49.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEV-IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v-~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
-.+.|-|-++|.....+||...|..|+.- ..|..+-+ -.||-.|.+...|..||.. ...+|.-+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~-kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL-KHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc-cCceEEeee
Confidence 45789999999999999999999999742 34444433 2599999999999999984 555544443
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.35 E-value=2.4 Score=44.76 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=58.5
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccC-cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
.+.|+|-.+|..+|-.||..|+..+- .|..++|++|..- .+=.++|.|.+.++|......+||+.|+.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 57899999999999999999998764 7889999997422 344578999999999999999999998763
No 212
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=83.83 E-value=4.1 Score=36.34 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=52.0
Q ss_pred Ccceeccc----CCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 231 DTLFVGNI----CNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 231 ~~L~V~nL----p~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
.+|.|.-| ...-+-..|...++.||+ |..|.+.-. -.|.|.|.+..+|-+|+.+++...- +
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGp--I~SVT~cGr--------qsavVvF~d~~SAC~Av~Af~s~~p-----g 151 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGP--IQSVTLCGR--------QSAVVVFKDITSACKAVSAFQSRAP-----G 151 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCC--cceeeecCC--------ceEEEEehhhHHHHHHHHhhcCCCC-----C
Confidence 45666444 444455667778899999 999988653 4699999999999999999887543 6
Q ss_pred cceeeeccCC
Q 006370 307 RTVKVAFAEP 316 (648)
Q Consensus 307 ~~l~v~~a~~ 316 (648)
..+...|...
T Consensus 152 tm~qCsWqqr 161 (166)
T PF15023_consen 152 TMFQCSWQQR 161 (166)
T ss_pred ceEEeecccc
Confidence 6666666543
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.69 E-value=4.1 Score=32.36 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=35.1
Q ss_pred CCCHHHHHHhhcccC-----cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 339 HWKENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 339 ~~t~~~l~~~f~~~G-----~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|+.+.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467788888887654 4567777554 789887654 688889999999999999888753
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.33 E-value=0.57 Score=47.65 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=58.6
Q ss_pred ceeeeecCCCCCCCHHHHH---HhhcccCcEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 328 VKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~d~~~~---~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
.+-++|-+|+..+-.+.+. .+|.+||.|..|.+..+.... ....-++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888876554443 578999999999988765211 1122379999999999999999999999998866
Q ss_pred EEEE
Q 006370 402 VKLR 405 (648)
Q Consensus 402 v~~~ 405 (648)
+.+.
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 6654
No 215
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.06 E-value=7.6 Score=33.50 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=46.7
Q ss_pred CcceecccCCCCcH-HHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 231 DTLFVGNICNTWTK-EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 231 ~~L~V~nLp~~~t~-e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
..|.|-..|..++. +.|..+.+.+ ...|..++|+++ ...++-.+++.|.+..+|......+||..+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~-~~~i~~~riird---~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPF-REDIEHIRIIRD---GTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcc-cccEEEEEEeeC---CCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 44554455555554 4554444443 335888889887 334677789999999999999999999887
No 216
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=82.91 E-value=57 Score=33.01 Aligned_cols=61 Identities=11% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC-------CCCCcceEEEEEechhhHHHHH
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS-------TNRNKGYAFVKFANKEHAKRAL 209 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~-------tg~~kG~afV~F~~~e~A~~Al 209 (648)
..+.|...|+..+++-..+...|.+||+|++|.++.+.. .........+.|-+.+.|....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 457888999999999999999999999999999997751 1234567888999988876543
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.77 E-value=2.4 Score=40.25 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=44.1
Q ss_pred CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC--CCeEeeeccCCCCC
Q 006370 163 TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGTAPS 227 (648)
Q Consensus 163 te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~G~~i~v~~~ 227 (648)
..+.|+++|..++.+..+.+++. .+-..|.|.+.+.|.+|...|+ +..+.|..|++-.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34789999999999888877644 4569999999999999999999 88898888765433
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.12 E-value=3 Score=44.09 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
+..|+|-.+|..+|-.||..|+..|- .|..++|++|.. .++=.+.|.|.+.++|......+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999988765 689999999632 345568999999999999999999877653
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.23 E-value=0.45 Score=53.71 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=54.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE--eeeccCCCCC
Q 006370 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI--CGKRCGTAPS 227 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l--~G~~i~v~~~ 227 (648)
..+.|.+-..|-..|..+|.+||.|.+++..++ ...|.|.|.+.+.|..|+.+|+|..+ .|-+.+|..+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 344445556677789999999999999999877 44699999999999999999998764 3555555544
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.25 E-value=0.96 Score=49.97 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=60.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....+|||+||...+..+-++.++..+|-|..+.... |+|+.|.....+..|+..|+...+.+..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34678999999999999999999999999988876643 89999999999999999888777777766543
No 221
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.08 E-value=3.2 Score=41.56 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=48.3
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (648)
..|.|-++|... -.-|..+|++||.|+......+ -.|-.|.|.+.-+|.+||. -||+.|+|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 456677777643 3567899999999988766422 3489999999999999997 5888888753
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=78.37 E-value=2.8 Score=34.48 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=42.7
Q ss_pred EEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCC--CccccccceeeeecCCCCCCCHHHHHHhhc
Q 006370 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP--DPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350 (648)
Q Consensus 278 afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~--~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~ 350 (648)
|+|+|.+..-|...++. ....+.++.....+++.-....... .-......++|.|.|||..+.++.|++..+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999888773 3333433322222332221111111 111223457899999999999999988764
No 223
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=77.72 E-value=1.3 Score=46.18 Aligned_cols=8 Identities=50% Similarity=0.505 Sum_probs=4.4
Q ss_pred CCHHHHHH
Q 006370 162 ATQEDVRK 169 (648)
Q Consensus 162 ~te~dL~~ 169 (648)
+|.+|++.
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 46666554
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.50 E-value=11 Score=41.41 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=64.0
Q ss_pred cccceeeeecCCCCC-CCHHHHHHhhccc----CcEEEEEEeecC----------CCCC---------------------
Q 006370 325 MAHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNM----------STAK--------------------- 368 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~d~----------~~~~--------------------- 368 (648)
...+++|-|.||.|. +...+|.-+|+.| |.|..|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999995 7889999998876 689999876531 1111
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 369 ----------------RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 369 ----------------~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.-=||.|+|.+...|.+....++|..|......+.+..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12278999999999999999999999998877776643
No 225
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.75 E-value=12 Score=29.03 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 161 ~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
.++-++|+..+..|+-. . |..+ .|| =||.|.+.++|.+|....++..+....+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 56788999999999732 3 3334 233 4899999999999999999988776654
No 226
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=74.38 E-value=1.8 Score=50.75 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=5.9
Q ss_pred ccccCCCcCCC
Q 006370 17 KERLGDSSKQK 27 (648)
Q Consensus 17 ~~~~gr~~~~~ 27 (648)
++++.||+|..
T Consensus 1627 sevlkrskkee 1637 (3015)
T KOG0943|consen 1627 SEVLKRSKKEE 1637 (3015)
T ss_pred HHHHhhhhhhh
Confidence 45667744433
No 227
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.33 E-value=9.4 Score=38.37 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=50.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
...|-|-++|...+. -|-.+|++||.|+.... ..+-.+-+|.|.+.-+|++||.. ++.+|.|..
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 457778888876543 67889999999977644 34456899999999999999984 787777653
No 228
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.89 E-value=2.5 Score=49.71 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=5.1
Q ss_pred CcceecccCCC
Q 006370 231 DTLFVGNICNT 241 (648)
Q Consensus 231 ~~L~V~nLp~~ 241 (648)
+.-|+.||-.+
T Consensus 1930 rssflSN~Red 1940 (3015)
T KOG0943|consen 1930 RSSFLSNLRED 1940 (3015)
T ss_pred hhhhhhhcccc
Confidence 34455555433
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=73.14 E-value=11 Score=39.34 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=31.1
Q ss_pred ccCCCCEEEEcCCCC-CCCHHHHHHHhhcc----CCeEEEEEEec
Q 006370 146 KIKKEHEIFIGGLDR-DATQEDVRKVFERI----GEVIEVRLHKN 185 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~-~~te~dL~~~F~~~----G~v~~v~i~~d 185 (648)
.-....+|-|-||.| .+.-.+|..+|+.| |.|..|.|+..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 345678999999998 46778999999876 57888888654
No 230
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.92 E-value=12 Score=42.40 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=7.8
Q ss_pred echhhHHHHHHhc
Q 006370 200 ANKEHAKRALTEM 212 (648)
Q Consensus 200 ~~~e~A~~Al~~l 212 (648)
.....+.+||+++
T Consensus 207 k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666777664
No 231
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=71.45 E-value=2.6 Score=45.91 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHhCCCeecCCee
Q 006370 379 THEAAVACINAINNKEFSDGNS 400 (648)
Q Consensus 379 ~~~~A~~Ai~~lng~~~~g~~i 400 (648)
+.+++++|-+.+....|.|+.|
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCcc
Confidence 4566666666665566666553
No 232
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=71.32 E-value=6.5 Score=42.59 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=3.9
Q ss_pred CCCCCCCH
Q 006370 157 GLDRDATQ 164 (648)
Q Consensus 157 nLp~~~te 164 (648)
|-|..+|-
T Consensus 534 napkra~s 541 (615)
T KOG0526|consen 534 NAPKRATS 541 (615)
T ss_pred CCCccchh
Confidence 45554443
No 233
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.95 E-value=2.4 Score=34.82 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=41.0
Q ss_pred EEEEEechhhHHHHHHhcCCCe-Eeeecc---------------CCCCCCCCCcceecccCCCCcHHHHHHHHh
Q 006370 195 AFVKFANKEHAKRALTEMKNPV-ICGKRC---------------GTAPSEDNDTLFVGNICNTWTKEAIKQKLK 252 (648)
Q Consensus 195 afV~F~~~e~A~~Al~~l~~~~-l~G~~i---------------~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~ 252 (648)
|+|+|.+...|+..++.-...+ +.+..+ .|......++|.|.|||....++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998532221 222222 223334578999999999999999887653
No 234
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=69.31 E-value=4.3 Score=43.80 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=11.4
Q ss_pred EEEcCCCCCCCHHHHHHHh
Q 006370 153 IFIGGLDRDATQEDVRKVF 171 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F 171 (648)
-.|+.||--++.++-..++
T Consensus 801 ~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 801 NMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHhcCCcccchHHHHHHh
Confidence 3456677666666655544
No 235
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=68.84 E-value=4.6 Score=46.00 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=61.7
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
.+..+.|.+...|-..|..+|.+||. |..+..+++. ..|.|+|.+.+.|..|+.+|++.++... +.+.+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~--v~s~wtlr~~-------N~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~ 367 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGS--VASAWTLRDL-------NMALVSFSSVESAILALDALQGKEVSVT--GAPSR 367 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcc--hhhheecccc-------cchhhhhHHHHHHHHhhhhhcCCccccc--CCcee
Confidence 34555677778889999999999998 8888887764 5799999999999999999999887543 55677
Q ss_pred eeccCCCC
Q 006370 311 VAFAEPLR 318 (648)
Q Consensus 311 v~~a~~~~ 318 (648)
|.++....
T Consensus 368 V~~ak~~~ 375 (1007)
T KOG4574|consen 368 VSFAKTLP 375 (1007)
T ss_pred EEeccccc
Confidence 77766543
No 236
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.06 E-value=3 Score=47.11 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=3.0
Q ss_pred CCccchh
Q 006370 27 KEPALVE 33 (648)
Q Consensus 27 ~~~~~vd 33 (648)
-+.|++|
T Consensus 796 ~eeIp~d 802 (988)
T KOG2038|consen 796 EEEIPPD 802 (988)
T ss_pred hccCChh
Confidence 3344444
No 237
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=64.88 E-value=73 Score=36.71 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=6.8
Q ss_pred eEEEEEecCHHHHHHHH
Q 006370 276 GFAFVMFSCHVDAMAAY 292 (648)
Q Consensus 276 G~afV~f~~~~~A~~A~ 292 (648)
|.|.+-|-+..-..+|+
T Consensus 632 GIalLPFiDe~rLl~a~ 648 (931)
T KOG2044|consen 632 GIALLPFIDERRLLSAV 648 (931)
T ss_pred ccccccccchhhHHHHH
Confidence 34444444443333333
No 238
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=64.83 E-value=8.7 Score=40.90 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.1
Q ss_pred CCCEEEEcCCCCCCCHHHH
Q 006370 149 KEHEIFIGGLDRDATQEDV 167 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL 167 (648)
...+||-+-..+.+.-++|
T Consensus 315 ~dYkvftr~fDe~v~aeel 333 (620)
T COG4547 315 VDYKVFTREFDEIVLAEEL 333 (620)
T ss_pred ccccccchhhhhhhhHHHh
Confidence 3456666655555544444
No 239
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=63.57 E-value=13 Score=29.44 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHhhccC-----CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 160 RDATQEDVRKVFERIG-----EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 160 ~~~te~dL~~~F~~~G-----~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
..++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|+++.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 4678888888887754 4667777543 78988764 478999999999999999887754
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.46 E-value=2.8 Score=45.35 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=56.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
....++|||+|+++.++-.+|..+++.+--+..+.+...........+.+|.|.---....|+.+||+.-+.
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 346789999999999999999999999876666666544444456778999999888888888888775544
No 241
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=59.33 E-value=11 Score=42.55 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=16.5
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 372 YGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 372 ~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
-.|+...+.++-..|+++|-...+.|.
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCCCc
Confidence 356666666666677666655555554
No 242
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=4 Score=43.34 Aligned_cols=13 Identities=0% Similarity=-0.002 Sum_probs=6.4
Q ss_pred ccchhhhhccCCc
Q 006370 5 KFSEDKVSNYDNK 17 (648)
Q Consensus 5 ~~~~~~~~~~n~~ 17 (648)
.+..++.++.|..
T Consensus 28 ~~r~~~~~~~~~~ 40 (483)
T KOG2773|consen 28 SNRQKAARLLNEE 40 (483)
T ss_pred cchhhhhhcchhh
Confidence 3444555555544
No 243
>PHA02664 hypothetical protein; Provisional
Probab=57.83 E-value=21 Score=36.02 Aligned_cols=18 Identities=6% Similarity=-0.053 Sum_probs=13.8
Q ss_pred cccchhhhhccCCccccC
Q 006370 4 AKFSEDKVSNYDNKERLG 21 (648)
Q Consensus 4 ~~~~~~~~~~~n~~~~~g 21 (648)
..++|++++..||..+..
T Consensus 391 iaaae~~~~~a~gsp~aa 408 (534)
T PHA02664 391 IAAAERAANGARGSPMAA 408 (534)
T ss_pred HhhhhhhhccccCCcccC
Confidence 456788999888887763
No 244
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=55.77 E-value=5.2 Score=44.94 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=9.2
Q ss_pred CCCCCCCHHHHHHhh
Q 006370 335 GVPPHWKENQIRDQI 349 (648)
Q Consensus 335 nLp~~~t~~~l~~~f 349 (648)
-+|-.+|+++|...=
T Consensus 551 ~~~l~vTledll~ae 565 (822)
T KOG2141|consen 551 SLPLSVTLEDLLHAE 565 (822)
T ss_pred hccccccHHHhhChH
Confidence 345567777776543
No 245
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=54.73 E-value=5.7 Score=43.00 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=4.0
Q ss_pred CCCHHHHHH
Q 006370 161 DATQEDVRK 169 (648)
Q Consensus 161 ~~te~dL~~ 169 (648)
.++-+.|++
T Consensus 548 ~~~r~~ik~ 556 (615)
T KOG0526|consen 548 NASRESIKE 556 (615)
T ss_pred HhhhhhHhh
Confidence 344444444
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.61 E-value=27 Score=34.77 Aligned_cols=57 Identities=18% Similarity=0.376 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEech-------hhHHHHHHhcC
Q 006370 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK-------EHAKRALTEMK 213 (648)
Q Consensus 152 tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~-------e~A~~Al~~l~ 213 (648)
-|+|+||+.++...||+..+.+.+-+ -..|... -+.|-||+.|.+. .++.+++..++
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 49999999999999999999887633 2333222 3477899999764 44555555443
No 247
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=54.05 E-value=24 Score=40.00 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=12.3
Q ss_pred CCCC----CCHHHHHHHhhccC
Q 006370 158 LDRD----ATQEDVRKVFERIG 175 (648)
Q Consensus 158 Lp~~----~te~dL~~~F~~~G 175 (648)
||+. .+-++|..+++.+-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6653 36678888887765
No 248
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=52.10 E-value=13 Score=44.54 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.6
Q ss_pred hhhhhc
Q 006370 8 EDKVSN 13 (648)
Q Consensus 8 ~~~~~~ 13 (648)
++||++
T Consensus 1294 ~~aI~k 1299 (1640)
T KOG0262|consen 1294 ERAIKK 1299 (1640)
T ss_pred HHHHHH
Confidence 344433
No 249
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.48 E-value=13 Score=34.66 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=48.7
Q ss_pred eeeeecCCCCCCC-----HHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC-eeEE
Q 006370 329 KTVFLDGVPPHWK-----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKV 402 (648)
Q Consensus 329 ~~l~v~nLp~~~t-----~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~i~v 402 (648)
+.+.+.+|+..+. ......+|.++.......+++. .++.-|.|.+.+.|..|...++...|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3455666665432 2345566776665555555433 45677899999999999999999999999 6555
Q ss_pred EEE
Q 006370 403 KLR 405 (648)
Q Consensus 403 ~~~ 405 (648)
.++
T Consensus 85 yfa 87 (193)
T KOG4019|consen 85 YFA 87 (193)
T ss_pred EEc
Confidence 554
No 250
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.33 E-value=27 Score=34.62 Aligned_cols=35 Identities=20% Similarity=0.524 Sum_probs=27.7
Q ss_pred cceeeeecCCCCC------------CCHHHHHHhhcccCcEEEEEEe
Q 006370 327 HVKTVFLDGVPPH------------WKENQIRDQIKGYGDVIRIVLA 361 (648)
Q Consensus 327 ~~~~l~v~nLp~~------------~t~~~l~~~f~~~G~v~~v~i~ 361 (648)
...+|++.+||.. .+++.|+..|..||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3457888888753 3567899999999999999885
No 251
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=48.87 E-value=7.3 Score=42.96 Aligned_cols=7 Identities=14% Similarity=-0.016 Sum_probs=3.6
Q ss_pred ccchhcc
Q 006370 29 PALVEVA 35 (648)
Q Consensus 29 ~~~vd~a 35 (648)
++-+-|+
T Consensus 895 ~~nlnW~ 901 (1001)
T COG5406 895 SANLNWN 901 (1001)
T ss_pred cccccHH
Confidence 3445565
No 252
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=48.73 E-value=5.8 Score=44.17 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=2.4
Q ss_pred CCCHHHHH
Q 006370 161 DATQEDVR 168 (648)
Q Consensus 161 ~~te~dL~ 168 (648)
++|.+++.
T Consensus 189 DVTaeEF~ 196 (556)
T PF05918_consen 189 DVTAEEFE 196 (556)
T ss_dssp T--HHHHH
T ss_pred hccHHHHH
Confidence 34444433
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.50 E-value=25 Score=27.40 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 165 ~dL~~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
++|.+.|+..| +|..|+-+..+.+......-||+.....+... .|+-+.|++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899989 88999999888877788888888876654443 2344566777777665543
No 254
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=46.83 E-value=14 Score=38.50 Aligned_cols=11 Identities=9% Similarity=-0.167 Sum_probs=5.3
Q ss_pred CCcHHHHHHHH
Q 006370 241 TWTKEAIKQKL 251 (648)
Q Consensus 241 ~~t~e~l~~~f 251 (648)
.++..+|..+.
T Consensus 230 ~v~~~dIe~~~ 240 (324)
T PF05285_consen 230 LVDPSDIEGFH 240 (324)
T ss_pred cCCHHHHHhHH
Confidence 34555554444
No 255
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=46.17 E-value=33 Score=34.23 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=35.5
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEE-EEEEeecCCCCCcccEEEEEeCCH
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTH 380 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~d~~~~~~~G~afV~F~~~ 380 (648)
+-|+|+||+.++--.||+..+.+.+-+- .+.+ . ...|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-k-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-K-----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee-e-----cCCcceeEecCCc
Confidence 5699999999999999999999876442 3333 2 2577899999774
No 256
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=44.92 E-value=29 Score=37.38 Aligned_cols=15 Identities=7% Similarity=-0.033 Sum_probs=10.3
Q ss_pred ccchhccccchhHHh
Q 006370 29 PALVEVAKHNDIIEA 43 (648)
Q Consensus 29 ~~~vd~a~~k~~~~~ 43 (648)
.+++-|+..+.++..
T Consensus 14 s~k~~~~~~~dk~~~ 28 (517)
T KOG3118|consen 14 STKTRKDIVEDKYDD 28 (517)
T ss_pred ccCcchhhhhhhhcc
Confidence 666778777776654
No 257
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.04 E-value=29 Score=27.07 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=44.5
Q ss_pred HHHHHHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 165 ~dL~~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
++|.+-|...| +|..|.-+..+.++.....-||+.....+...++ +=..|.+..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 46788888888 7888888888777888888999988776644433 33456666666665543
No 258
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=43.76 E-value=1.1e+02 Score=33.28 Aligned_cols=26 Identities=12% Similarity=0.408 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIG 175 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G 175 (648)
+..-||++ -|..+|+++-..|+..+-
T Consensus 335 dvKpIW~R-~p~eV~EdEYt~FYkSls 360 (785)
T KOG0020|consen 335 DVKPIWLR-KPKEVTEDEYTKFYKSLS 360 (785)
T ss_pred ccchhhcc-CchhcchHHHHHHHHhhh
Confidence 45567776 588999999999987753
No 259
>COG4907 Predicted membrane protein [Function unknown]
Probab=43.53 E-value=41 Score=36.01 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=23.1
Q ss_pred HHHHHHhhcccC-----cEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHHhCCCe
Q 006370 342 ENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFST----HEAAVACINAINNKE 394 (648)
Q Consensus 342 ~~~l~~~f~~~G-----~v~~v~i~~d~~~~~~~G~afV~F~~----~~~A~~Ai~~lng~~ 394 (648)
|+..+.+++.|. .+++|.|+.+ ++.|.+ .+.+.+|++.++-..
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~----------ylVYatALGV~dkVvkam~~~~~~e 539 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQ----------YLVYATALGVSDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhh----------hhhhhhhhccHHHHHHHHHHhCcHh
Confidence 455666665554 4566777654 233433 355556666555433
No 260
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=41.92 E-value=31 Score=39.60 Aligned_cols=9 Identities=22% Similarity=0.612 Sum_probs=4.2
Q ss_pred HHHHHhhcC
Q 006370 247 IKQKLKDYG 255 (648)
Q Consensus 247 l~~~f~~~G 255 (648)
|.+...+||
T Consensus 372 l~~~a~~yg 380 (622)
T PF02724_consen 372 LEKYAPKYG 380 (622)
T ss_pred HHHHHHhcC
Confidence 334444555
No 261
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=41.03 E-value=31 Score=39.58 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.0
Q ss_pred HHHHHHHhhcC
Q 006370 245 EAIKQKLKDYG 255 (648)
Q Consensus 245 e~l~~~f~~~G 255 (648)
..|+.+|.+.|
T Consensus 337 krL~~lLAkMG 347 (622)
T PF02724_consen 337 KRLHKLLAKMG 347 (622)
T ss_pred HHHHHHHHHhC
Confidence 34444444444
No 262
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=74 Score=33.09 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=14.0
Q ss_pred cccchhhhhccCCccccCC
Q 006370 4 AKFSEDKVSNYDNKERLGD 22 (648)
Q Consensus 4 ~~~~~~~~~~~n~~~~~gr 22 (648)
++-+|..+..-||.+-.|-
T Consensus 259 k~paedG~~de~n~ea~g~ 277 (520)
T KOG4434|consen 259 KKPAEDGGDDENNLEASGA 277 (520)
T ss_pred hCchhhCCCcccchhccCC
Confidence 4556778888888777776
No 263
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=40.78 E-value=1.4e+02 Score=32.87 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=4.4
Q ss_pred HHHHHhCCCee
Q 006370 385 ACINAINNKEF 395 (648)
Q Consensus 385 ~Ai~~lng~~~ 395 (648)
+.++.+-+..+
T Consensus 358 ~~ie~~l~~~~ 368 (456)
T PRK10590 358 RDIEKLLKKEI 368 (456)
T ss_pred HHHHHHhcCCC
Confidence 33444433333
No 264
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.67 E-value=26 Score=37.48 Aligned_cols=7 Identities=0% Similarity=-0.021 Sum_probs=2.9
Q ss_pred cCCeeEE
Q 006370 396 SDGNSKV 402 (648)
Q Consensus 396 ~g~~i~v 402 (648)
.||.|+-
T Consensus 445 KgRKLrY 451 (483)
T KOG2773|consen 445 KGRKLRY 451 (483)
T ss_pred cCceeee
Confidence 3444333
No 265
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=38.61 E-value=9.6 Score=33.30 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=5.8
Q ss_pred Cccchhcccc
Q 006370 28 EPALVEVAKH 37 (648)
Q Consensus 28 ~~~~vd~a~~ 37 (648)
.+..|.|.+.
T Consensus 46 nPRKlkWT~~ 55 (131)
T PRK14891 46 EARDLEWTEA 55 (131)
T ss_pred CCccchhHHH
Confidence 4556677643
No 266
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.55 E-value=48 Score=28.88 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=29.3
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHH
Q 006370 152 EIFIGGLDRD---------ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKR 207 (648)
Q Consensus 152 tlfV~nLp~~---------~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~ 207 (648)
++.|-|++.. ++.+.|++.|..|.+++ |+.+.+. .-+.|++.|+|.+.-..-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHH
Confidence 5667777653 35578999999999875 5555553 2578999999986554433
No 267
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=38.25 E-value=36 Score=31.70 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCC--CCcceEEEEEechhhHHHHHHh
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTE 211 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg--~~kG~afV~F~~~e~A~~Al~~ 211 (648)
.++++.. +.+...++|..+-+ |.+..|.+-+. ..+ ..+|..||+|.+.++|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4566666 33334444444444 67877776543 223 5789999999999999998875
No 268
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=37.34 E-value=37 Score=36.41 Aligned_cols=8 Identities=13% Similarity=0.273 Sum_probs=3.6
Q ss_pred EeeeccCC
Q 006370 217 ICGKRCGT 224 (648)
Q Consensus 217 l~G~~i~v 224 (648)
+.|++|.|
T Consensus 426 MrGRpItv 433 (620)
T COG4547 426 MRGRPITV 433 (620)
T ss_pred cCCcceeh
Confidence 34555443
No 269
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=36.10 E-value=58 Score=29.46 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCCHHHHHHHhhc-cCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC----------
Q 006370 161 DATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED---------- 229 (648)
Q Consensus 161 ~~te~dL~~~F~~-~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~---------- 229 (648)
..+-..|...+.+ ++....+.+.. ...++..++|.+.+++.+++.. ....+.+..+.+..-.+
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccccee
Confidence 3555666665554 23322333321 2356899999999999999973 44455555554433221
Q ss_pred --CCcceecccCCC-CcHHHHHHHHhhcCCcceEEEEEee
Q 006370 230 --NDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVS 266 (648)
Q Consensus 230 --~~~L~V~nLp~~-~t~e~l~~~f~~~G~~~i~~i~i~~ 266 (648)
.-=|.|.|||.. ++++-|+.+.+.+|. +..+....
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~--~i~vD~~t 139 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE--PIEVDENT 139 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC--eEEEEcCC
Confidence 112557899987 788899999999998 77776543
No 270
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.84 E-value=6.1e+02 Score=27.62 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=8.5
Q ss_pred EEEEEecCHHHHH
Q 006370 277 FAFVMFSCHVDAM 289 (648)
Q Consensus 277 ~afV~f~~~~~A~ 289 (648)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 5667777766554
No 271
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=35.33 E-value=9.3 Score=41.59 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=48.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~ 396 (648)
..+.|+|.|++++++-.+|..+|+.+--+..+.+........-.-+++|+|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3578999999999999999999999866665555433222333456789998655555566666665443
No 272
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=34.64 E-value=66 Score=35.12 Aligned_cols=7 Identities=29% Similarity=1.118 Sum_probs=3.5
Q ss_pred CCCCCCH
Q 006370 336 VPPHWKE 342 (648)
Q Consensus 336 Lp~~~t~ 342 (648)
|+++|-.
T Consensus 405 LHPSWeA 411 (432)
T PF09073_consen 405 LHPSWEA 411 (432)
T ss_pred CCccHHH
Confidence 5555543
No 273
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=34.46 E-value=23 Score=44.57 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=14.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHhC
Q 006370 370 KDYGFIDFSTHEAAVACINAIN 391 (648)
Q Consensus 370 ~G~afV~F~~~~~A~~Ai~~ln 391 (648)
.|...+-|++..-+.+|+..|-
T Consensus 4408 s~~~~la~etl~lvtkals~le 4429 (4600)
T COG5271 4408 SGSTVLALETLALVTKALSLLE 4429 (4600)
T ss_pred cCceeeehHHHHHHHHHHHHHh
Confidence 4456667777777777776553
No 274
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.44 E-value=45 Score=34.67 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=43.9
Q ss_pred EEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCCCCcceecccCCCCcHHHHHHHHhh
Q 006370 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD 253 (648)
Q Consensus 195 afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~ 253 (648)
|||+|.+..+|..|++.+.... ...+.+..+.+.+.++=.||........++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999999654332 35567888888888888899777777777665543
No 275
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=32.71 E-value=6.5e+02 Score=29.51 Aligned_cols=6 Identities=0% Similarity=0.130 Sum_probs=2.5
Q ss_pred hCCCee
Q 006370 390 INNKEF 395 (648)
Q Consensus 390 lng~~~ 395 (648)
|+|..-
T Consensus 759 l~G~~~ 764 (931)
T KOG2044|consen 759 LDGAKE 764 (931)
T ss_pred cCCCCC
Confidence 444433
No 276
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.25 E-value=1.7e+02 Score=23.92 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=42.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc
Q 006370 153 IFIGGLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F~~-~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (648)
.|+--....++..+|+..++. || .|..|..+.-+ ...--|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 344446789999999999988 66 67777776553 23456999999999888876543
No 277
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=31.27 E-value=21 Score=38.57 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=7.8
Q ss_pred EEEEechhhHHHHHHh
Q 006370 196 FVKFANKEHAKRALTE 211 (648)
Q Consensus 196 fV~F~~~e~A~~Al~~ 211 (648)
.=.|...+.|-|..+.
T Consensus 213 HDrF~e~eQaPKSr~e 228 (694)
T KOG4264|consen 213 HDRFDEKEQAPKSRKE 228 (694)
T ss_pred cccchhhhcCchHHHH
Confidence 3345555555544443
No 278
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=31.12 E-value=21 Score=36.79 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=5.3
Q ss_pred CcceecccC
Q 006370 231 DTLFVGNIC 239 (648)
Q Consensus 231 ~~L~V~nLp 239 (648)
++||+.||.
T Consensus 236 TRiF~SnL~ 244 (449)
T KOG3871|consen 236 TRIFASNLK 244 (449)
T ss_pred HHHHHhcCC
Confidence 456666664
No 279
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.12 E-value=49 Score=29.96 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=53.3
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCC-ccccccceeeeecCCCCC-CCHHHHHHhhcccC
Q 006370 276 GFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYG 353 (648)
Q Consensus 276 G~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~-~~~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G 353 (648)
++..++|.+.+++.+++.. ....+ .+..+.+..-.+..... ........-|.|.|||.. .+++-|+.+.+.+|
T Consensus 56 ~~fl~~F~~~~d~~~vl~~---~p~~~--~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKG---GPWNF--NGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CeEEEEEEeccceeEEEec---ccccc--cccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 7889999999999998762 22211 13444444333322211 111122345788999997 78899999999999
Q ss_pred cEEEEEEee
Q 006370 354 DVIRIVLAR 362 (648)
Q Consensus 354 ~v~~v~i~~ 362 (648)
.+..+....
T Consensus 131 ~~i~vD~~t 139 (153)
T PF14111_consen 131 EPIEVDENT 139 (153)
T ss_pred CeEEEEcCC
Confidence 999888743
No 280
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.08 E-value=1e+02 Score=35.47 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 006370 380 HEAAVACIN 388 (648)
Q Consensus 380 ~~~A~~Ai~ 388 (648)
+....-||.
T Consensus 501 ~~~~~~~i~ 509 (629)
T PRK11634 501 VRHIVGAIA 509 (629)
T ss_pred HHHHHHHHH
Confidence 344444444
No 281
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.97 E-value=1e+02 Score=32.44 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHH
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~ 294 (648)
.+.|-|-++|.....++|..+|..|+. .--+|++|.+ ..+|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDd--------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDD--------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeec--------ceeEEeecchHHHHHHhhc
Confidence 456778999999999999999999985 2456677766 4799999999999999874
No 282
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.71 E-value=88 Score=27.27 Aligned_cols=56 Identities=5% Similarity=0.215 Sum_probs=29.5
Q ss_pred eeeeecCCCCC---------CCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCH-HHHHHHH
Q 006370 329 KTVFLDGVPPH---------WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH-EAAVACI 387 (648)
Q Consensus 329 ~~l~v~nLp~~---------~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~-~~A~~Ai 387 (648)
.++.|.|++.. ++-+.|++.|+.|..+. |..+.+.. ...|+++|+|.+. .--..|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 35566666543 35578999999997764 55666543 4789999999863 3334443
No 283
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.19 E-value=2.3e+02 Score=22.71 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc
Q 006370 153 IFIGGLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (648)
Q Consensus 153 lfV~nLp~~~te~dL~~~F~~-~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (648)
-|+-.++.+++..+|+..+++ |+ .|..|..+.-+ ...--|||.+..-..|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 455567889999999999988 66 67777766543 23446999999888887765543
No 284
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.11 E-value=1.8e+02 Score=22.76 Aligned_cols=61 Identities=21% Similarity=0.170 Sum_probs=39.7
Q ss_pred ceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC-CCcceecccCCCCcHHHHHHHHhhcC
Q 006370 193 GYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED-NDTLFVGNICNTWTKEAIKQKLKDYG 255 (648)
Q Consensus 193 G~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~-~~~L~V~nLp~~~t~e~l~~~f~~~G 255 (648)
.+.+|.|.+..+|.+|-+.|+..-+..+.+-+...-. .+-+-|. ++ ....+.+.++++..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENG 63 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCC
Confidence 3689999999999999998887766666555444322 2222221 11 145667777777766
No 285
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.35 E-value=1.4e+02 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeEEEEEE
Q 006370 165 EDVRKVFERIGEVIEVRLH 183 (648)
Q Consensus 165 ~dL~~~F~~~G~v~~v~i~ 183 (648)
.+|+++|+++|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998665553
No 286
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=26.05 E-value=42 Score=41.92 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=2.9
Q ss_pred eEEEEEe
Q 006370 259 VENINLV 265 (648)
Q Consensus 259 i~~i~i~ 265 (648)
|..|.+.
T Consensus 397 i~~i~v~ 403 (2849)
T PTZ00415 397 IAAITIE 403 (2849)
T ss_pred eEEEEEe
Confidence 4444443
No 287
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=25.95 E-value=29 Score=34.44 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=13.1
Q ss_pred cccchhhhhccCCccccCC
Q 006370 4 AKFSEDKVSNYDNKERLGD 22 (648)
Q Consensus 4 ~~~~~~~~~~~n~~~~~gr 22 (648)
.++-+-.++++||+.++..
T Consensus 90 Nk~pe~V~rHv~GKRf~ka 108 (244)
T PF05477_consen 90 NKSPEHVERHVNGKRFQKA 108 (244)
T ss_pred ccCHHHHHHHhhhHHHHHH
Confidence 3455667788888888754
No 288
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=25.92 E-value=1.1e+02 Score=28.67 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=8.7
Q ss_pred HHHHHHhhcccCcEEEEEE
Q 006370 342 ENQIRDQIKGYGDVIRIVL 360 (648)
Q Consensus 342 ~~~l~~~f~~~G~v~~v~i 360 (648)
+++|-.+=+-||.|.++.+
T Consensus 88 k~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 88 KEQIGKVDEIFGPINDVHF 106 (215)
T ss_pred hhhhcchhhhcccccccEE
Confidence 3344333344566655544
No 289
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=46 Score=37.22 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=11.0
Q ss_pred HHHHHHhhccCCeEEEEE
Q 006370 165 EDVRKVFERIGEVIEVRL 182 (648)
Q Consensus 165 ~dL~~~F~~~G~v~~v~i 182 (648)
..+++-|++|--+.+.+-
T Consensus 465 ~~ArerfqkYRGLksl~T 482 (754)
T KOG1980|consen 465 ESARERFQKYRGLKSLRT 482 (754)
T ss_pred hHHHHHHHHhcccccccc
Confidence 346677777766655544
No 290
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=28 Score=36.58 Aligned_cols=62 Identities=16% Similarity=0.358 Sum_probs=52.0
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHH
Q 006370 149 KEHEIFIGGLDRDATQE--------DVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~--------dL~~~F~~--~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~ 210 (648)
..+.+|+.++....+.. +|..+|.. .+.+..|..-++.....++|..|++|.....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45678888888765554 89999999 6788999998887677889999999999999999884
No 291
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=25.07 E-value=62 Score=36.33 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=3.7
Q ss_pred CEEEEcCCC
Q 006370 151 HEIFIGGLD 159 (648)
Q Consensus 151 ~tlfV~nLp 159 (648)
-.||-.-..
T Consensus 296 Y~vfTt~fD 304 (600)
T TIGR01651 296 YKVFTTAFD 304 (600)
T ss_pred ceecchhhh
Confidence 344444333
No 292
>COG4907 Predicted membrane protein [Function unknown]
Probab=23.70 E-value=72 Score=34.30 Aligned_cols=10 Identities=20% Similarity=0.700 Sum_probs=3.7
Q ss_pred eEEEEEecCH
Q 006370 276 GFAFVMFSCH 285 (648)
Q Consensus 276 G~afV~f~~~ 285 (648)
|.-++..-+.
T Consensus 418 G~ky~~~~~v 427 (595)
T COG4907 418 GLKYEHIGCV 427 (595)
T ss_pred CCEEEEehhH
Confidence 3333333333
No 293
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=93 Score=28.84 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.7
Q ss_pred ccccCC
Q 006370 17 KERLGD 22 (648)
Q Consensus 17 ~~~~gr 22 (648)
..|++|
T Consensus 104 ~~i~i~ 109 (227)
T KOG3241|consen 104 DQILIR 109 (227)
T ss_pred HHhhhc
Confidence 344454
No 294
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.96 E-value=1.9e+02 Score=29.39 Aligned_cols=79 Identities=9% Similarity=0.228 Sum_probs=55.9
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHH----HHhC--CCe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-------STAKRKDYGFIDFSTHEAAVACI----NAIN--NKE 394 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~-------~~~~~~G~afV~F~~~~~A~~Ai----~~ln--g~~ 394 (648)
++.|.+.||..+++-..+...|-+||.|+.|.++.+. ...+......+.|-+.+.+..-. +.|+ .+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999989999999999999999998775 11223456889999988875442 2222 234
Q ss_pred ecCCeeEEEEEe
Q 006370 395 FSDGNSKVKLRA 406 (648)
Q Consensus 395 ~~g~~i~v~~~~ 406 (648)
+....+.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 555566666543
No 295
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=22.91 E-value=55 Score=35.64 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=3.1
Q ss_pred HHHhhcC
Q 006370 249 QKLKDYG 255 (648)
Q Consensus 249 ~~f~~~G 255 (648)
+|+..||
T Consensus 228 eLv~~YG 234 (694)
T KOG4264|consen 228 ELVTKYG 234 (694)
T ss_pred HHHHHhC
Confidence 3444444
No 296
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=17 Score=38.39 Aligned_cols=78 Identities=5% Similarity=-0.090 Sum_probs=59.9
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.+.|+..||..+++.+|.-+|..||.|..+.+.+....+...-.+||.-.+ ..|..||..+.-..+.+..+++.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 466788999999999999999999999999887665556666677877554 456777777777777777777766543
No 297
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.01 E-value=66 Score=31.41 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=31.1
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEE
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRL 182 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i 182 (648)
....+..+||+-|||..+|++.|..+.+++|-+..+.+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 44557789999999999999999999999985544433
No 298
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.59 E-value=63 Score=36.88 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHhCC
Q 006370 379 THEAAVACINAINN 392 (648)
Q Consensus 379 ~~~~A~~Ai~~lng 392 (648)
-.+++.++++++-+
T Consensus 694 kl~~~l~~vek~~~ 707 (823)
T KOG2147|consen 694 KLEDTLALVEKLTG 707 (823)
T ss_pred HHHHHHHHHHHHhh
Confidence 34556666666554
No 299
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=2.1e+02 Score=30.28 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=55.2
Q ss_pred ccceeeeecCCCCC-CCHHHHHHhhccc----CcEEEEEEeecCC-----------------------------------
Q 006370 326 AHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNMS----------------------------------- 365 (648)
Q Consensus 326 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~d~~----------------------------------- 365 (648)
..+++|-|-||.|. +...+|.-+|+.| |.|..|.|....-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 34678999999985 7778888888765 5677676643210
Q ss_pred -----CC------Ccc-------------------cEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 366 -----TA------KRK-------------------DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 366 -----~~------~~~-------------------G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
.| .-+ =||.|+|.+...+.......+|..+....-.+.+
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 00 012 2788999999999999999999888776544433
No 300
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.49 E-value=74 Score=35.71 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q 006370 342 ENQIRDQIK 350 (648)
Q Consensus 342 ~~~l~~~f~ 350 (648)
+.+|+....
T Consensus 542 ~~hLr~vi~ 550 (600)
T TIGR01651 542 ERHLRAVIE 550 (600)
T ss_pred HHHHHHHHH
Confidence 344444443
No 301
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.44 E-value=1.2e+02 Score=31.94 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=49.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCC--CCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
....|.|.+||..+|+++|.+....|-. |.-..+...... ..-.+.|||.|...++........++.++..
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 4568999999999999999988877642 322333211000 1236779999999999888888888776543
No 302
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=21.30 E-value=37 Score=38.15 Aligned_cols=12 Identities=8% Similarity=-0.055 Sum_probs=4.7
Q ss_pred hhccCCccccCC
Q 006370 11 VSNYDNKERLGD 22 (648)
Q Consensus 11 ~~~~n~~~~~gr 22 (648)
+.+.--+.+.+|
T Consensus 8 ~~k~~kk~~d~~ 19 (661)
T KOG2256|consen 8 ARKLAKKNVDKR 19 (661)
T ss_pred hHHHhhcchhhh
Confidence 333333444443
No 303
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=20.66 E-value=54 Score=34.23 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=2.4
Q ss_pred HHHHHH
Q 006370 165 EDVRKV 170 (648)
Q Consensus 165 ~dL~~~ 170 (648)
.+|.+.
T Consensus 134 ~e~~~e 139 (390)
T KOG2897|consen 134 NEVQKE 139 (390)
T ss_pred HHHHhh
Confidence 344443
No 304
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=20.63 E-value=1.5e+02 Score=27.73 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=37.9
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHH
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~ 294 (648)
.++++.. +.....++|.++.+ |. +..+.+.+........+|..||+|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k--~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GK--GHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--cc--ceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455554 33334444445444 44 777776665433336789999999999999998764
No 305
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=20.43 E-value=43 Score=33.03 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=11.6
Q ss_pred ccccchhhhhccCCccccCC
Q 006370 3 VAKFSEDKVSNYDNKERLGD 22 (648)
Q Consensus 3 ~~~~~~~~~~~~n~~~~~gr 22 (648)
|+++|..+-.+-|..++.|-
T Consensus 74 vasi~n~~~~ne~dve~~~~ 93 (374)
T PTZ00438 74 VASIANDKSDNENDVELEGL 93 (374)
T ss_pred hhhccccccccccceeeeee
Confidence 44555555556666666665
No 306
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.06 E-value=1.1e+02 Score=32.15 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=47.8
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccC-cEEEEEEeecC--CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNM--STAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~d~--~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
..|.|.+||..++.++|.+....+- .|.+..+.... .-....++|+|.|...++...-...++|+.|-.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 5788999999999999888877753 23333333210 012236789999999999877777777776543
Done!