Query 006370
Match_columns 648
No_of_seqs 537 out of 3794
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 23:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 4.5E-41 1.5E-45 345.1 27.1 244 147-407 19-263 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-41 5.1E-46 350.1 23.6 248 146-406 37-289 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.7E-30 6E-35 254.4 15.3 180 149-337 14-201 (213)
4 4f02_A Polyadenylate-binding p 100.0 2E-28 6.9E-33 239.8 19.7 168 227-406 12-179 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 3.5E-28 1.2E-32 227.8 20.3 165 231-406 1-165 (166)
6 2qfj_A FBP-interacting repress 100.0 5.4E-28 1.9E-32 237.0 20.0 175 230-411 28-208 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 9.9E-28 3.4E-32 225.3 19.9 165 229-405 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 1.6E-27 5.6E-32 223.4 20.4 163 230-404 2-164 (167)
9 2qfj_A FBP-interacting repress 100.0 5.5E-28 1.9E-32 237.0 17.8 165 149-320 27-208 (216)
10 1b7f_A Protein (SXL-lethal pro 100.0 7.8E-28 2.7E-32 226.1 17.7 161 149-314 2-168 (168)
11 1l3k_A Heterogeneous nuclear r 100.0 1.1E-27 3.7E-32 231.1 18.8 172 228-408 11-183 (196)
12 1fxl_A Paraneoplastic encephal 100.0 1.7E-27 5.7E-32 223.4 19.3 158 150-314 2-167 (167)
13 1l3k_A Heterogeneous nuclear r 100.0 6.8E-28 2.3E-32 232.6 16.9 167 146-321 9-187 (196)
14 3nmr_A Cugbp ELAV-like family 100.0 8.8E-28 3E-32 227.2 17.0 162 149-315 2-175 (175)
15 2cjk_A Nuclear polyadenylated 100.0 9.8E-28 3.3E-32 225.2 15.7 159 149-317 2-166 (167)
16 3md3_A Nuclear and cytoplasmic 99.9 1.7E-27 6E-32 223.0 16.6 157 151-315 1-165 (166)
17 3nmr_A Cugbp ELAV-like family 99.9 7.1E-27 2.4E-31 220.9 20.2 168 229-405 2-174 (175)
18 3smz_A Protein raver-1, ribonu 99.9 3.2E-27 1.1E-31 241.9 15.6 161 151-319 96-266 (284)
19 2cjk_A Nuclear polyadenylated 99.9 5E-27 1.7E-31 220.4 13.3 163 229-406 2-164 (167)
20 2g4b_A Splicing factor U2AF 65 99.9 4.6E-26 1.6E-30 214.9 17.3 160 229-405 3-171 (172)
21 3pgw_A U1-A; protein-RNA compl 99.9 1.2E-25 4.1E-30 229.9 21.7 249 147-406 6-281 (282)
22 3tyt_A Heterogeneous nuclear r 99.9 3.4E-26 1.2E-30 221.8 16.0 155 149-313 3-203 (205)
23 2g4b_A Splicing factor U2AF 65 99.9 6.9E-26 2.4E-30 213.6 16.2 153 148-314 2-171 (172)
24 2ghp_A U4/U6 snRNA-associated 99.9 2.4E-26 8.1E-31 236.4 13.7 160 150-317 117-291 (292)
25 3tyt_A Heterogeneous nuclear r 99.9 8.9E-26 3E-30 218.9 16.9 157 229-399 3-194 (205)
26 3sde_A Paraspeckle component 1 99.9 5.8E-26 2E-30 229.4 15.8 162 147-318 19-180 (261)
27 2yh0_A Splicing factor U2AF 65 99.9 2.4E-25 8.2E-30 215.0 17.5 167 229-407 3-193 (198)
28 2yh0_A Splicing factor U2AF 65 99.9 2E-25 6.9E-30 215.5 16.9 157 149-319 3-196 (198)
29 1fje_B Nucleolin RBD12, protei 99.9 7.7E-26 2.6E-30 214.1 12.8 166 224-406 7-172 (175)
30 1fje_B Nucleolin RBD12, protei 99.9 2.3E-26 7.7E-31 217.8 7.2 158 146-317 9-174 (175)
31 2adc_A Polypyrimidine tract-bi 99.9 1.5E-24 5E-29 214.7 19.6 164 226-406 30-226 (229)
32 2adc_A Polypyrimidine tract-bi 99.9 1.4E-24 4.9E-29 214.8 17.2 155 147-317 31-228 (229)
33 1qm9_A Polypyrimidine tract-bi 99.9 1.7E-24 5.9E-29 209.2 15.3 160 230-406 3-195 (198)
34 3sde_A Paraspeckle component 1 99.9 2.9E-24 9.8E-29 217.0 17.1 156 228-408 20-179 (261)
35 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-24 5.2E-29 209.6 12.9 152 149-317 2-197 (198)
36 2kn4_A Immunoglobulin G-bindin 99.8 8.4E-20 2.9E-24 169.6 17.1 145 261-408 2-150 (158)
37 4f25_A Polyadenylate-binding p 99.8 4.9E-19 1.7E-23 155.0 8.0 96 149-246 4-113 (115)
38 3pgw_S U1-70K; protein-RNA com 99.7 7.5E-19 2.6E-23 189.0 7.8 81 327-407 101-181 (437)
39 2i2y_A Fusion protein consists 99.7 5.5E-18 1.9E-22 155.8 12.3 126 271-406 9-146 (150)
40 4fxv_A ELAV-like protein 1; RN 99.7 7.4E-18 2.5E-22 143.1 10.6 79 327-405 18-96 (99)
41 4fxv_A ELAV-like protein 1; RN 99.7 3.9E-18 1.4E-22 144.7 8.9 82 148-229 17-98 (99)
42 2kn4_A Immunoglobulin G-bindin 99.7 1.3E-17 4.6E-22 154.6 11.0 133 179-320 2-153 (158)
43 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-17 7.4E-22 152.9 11.9 82 326-407 37-118 (156)
44 3q2s_C Cleavage and polyadenyl 99.7 7.4E-18 2.5E-22 165.8 7.6 81 327-407 67-149 (229)
45 4f25_A Polyadenylate-binding p 99.7 3.9E-17 1.3E-21 142.8 10.0 106 230-344 5-113 (115)
46 3s8s_A Histone-lysine N-methyl 99.7 5.6E-17 1.9E-21 140.3 10.8 80 327-406 5-84 (110)
47 3s8s_A Histone-lysine N-methyl 99.7 5.3E-17 1.8E-21 140.5 9.1 81 148-228 4-84 (110)
48 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4E-22 139.5 4.4 82 150-231 1-84 (91)
49 2lea_A Serine/arginine-rich sp 99.7 2.6E-17 8.9E-22 148.1 6.9 121 277-407 6-126 (135)
50 2cqd_A RNA-binding region cont 99.7 2.3E-16 8E-21 138.1 12.3 81 327-408 16-96 (116)
51 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.6E-21 148.9 11.4 127 280-408 11-152 (165)
52 3ex7_B RNA-binding protein 8A; 99.7 1.6E-16 5.5E-21 141.4 10.9 83 326-408 20-102 (126)
53 2lxi_A RNA-binding protein 10; 99.7 2.4E-17 8.2E-22 137.6 4.7 79 328-406 1-81 (91)
54 2lkz_A RNA-binding protein 5; 99.7 4E-17 1.4E-21 137.0 6.1 80 327-406 8-93 (95)
55 2lkz_A RNA-binding protein 5; 99.7 2.9E-17 1E-21 137.8 5.0 83 147-229 6-94 (95)
56 2dgo_A Cytotoxic granule-assoc 99.7 8.1E-16 2.8E-20 134.4 14.3 82 327-408 14-95 (115)
57 1whw_A Hypothetical protein ri 99.7 4.1E-16 1.4E-20 132.4 11.6 82 327-408 7-88 (99)
58 2dnz_A Probable RNA-binding pr 99.7 4.4E-16 1.5E-20 131.1 11.6 80 327-406 4-83 (95)
59 3md1_A Nuclear and cytoplasmic 99.7 4.1E-16 1.4E-20 127.7 11.1 79 329-407 2-80 (83)
60 3lqv_A PRE-mRNA branch site pr 99.7 7.9E-17 2.7E-21 140.9 6.9 104 148-256 6-109 (115)
61 2cq0_A Eukaryotic translation 99.7 4.6E-16 1.6E-20 133.2 11.6 81 327-407 14-94 (103)
62 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.6E-16 1.6E-20 128.7 11.1 81 327-407 5-85 (87)
63 3p5t_L Cleavage and polyadenyl 99.7 6.3E-17 2.2E-21 134.9 5.6 80 329-408 2-83 (90)
64 2dnm_A SRP46 splicing factor; 99.7 2.6E-16 8.9E-21 134.7 9.6 81 327-407 12-92 (103)
65 2dgs_A DAZ-associated protein 99.7 7E-16 2.4E-20 131.0 12.1 80 327-407 9-88 (99)
66 2fy1_A RNA-binding motif prote 99.7 6E-16 2.1E-20 135.4 11.7 80 327-407 6-85 (116)
67 1x5s_A Cold-inducible RNA-bind 99.7 4.3E-16 1.5E-20 133.1 10.5 82 327-408 11-92 (102)
68 1p27_B RNA-binding protein 8A; 99.7 7.7E-16 2.6E-20 132.5 12.1 83 326-408 21-103 (106)
69 2cpz_A CUG triplet repeat RNA- 99.6 5.2E-16 1.8E-20 135.7 10.9 81 327-407 24-104 (115)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.2E-16 1.4E-20 128.3 9.7 79 327-405 6-84 (85)
71 2x1f_A MRNA 3'-END-processing 99.6 2E-16 6.7E-21 133.6 7.7 87 149-235 1-87 (96)
72 2d9p_A Polyadenylate-binding p 99.6 1E-15 3.5E-20 131.0 12.3 80 327-408 14-93 (103)
73 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-15 3.4E-20 138.7 12.5 80 327-406 41-120 (139)
74 3md1_A Nuclear and cytoplasmic 99.6 3.9E-16 1.3E-20 127.8 8.9 81 150-230 1-81 (83)
75 3ns6_A Eukaryotic translation 99.6 2.1E-16 7E-21 134.5 7.4 79 328-406 6-91 (100)
76 2cpf_A RNA binding motif prote 99.6 4.9E-16 1.7E-20 131.7 9.7 81 327-407 4-87 (98)
77 3p5t_L Cleavage and polyadenyl 99.6 9.4E-17 3.2E-21 133.8 5.1 79 151-229 2-82 (90)
78 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.9E-16 1.7E-20 132.7 9.6 81 327-407 11-91 (102)
79 1x5u_A Splicing factor 3B subu 99.6 7.6E-16 2.6E-20 132.2 10.8 80 327-406 14-93 (105)
80 2cqc_A Arginine/serine-rich sp 99.6 8.7E-16 3E-20 129.2 10.8 80 326-405 13-92 (95)
81 1x4h_A RNA-binding protein 28; 99.6 1E-15 3.5E-20 132.9 11.5 82 326-407 13-100 (111)
82 3q2s_C Cleavage and polyadenyl 99.6 1.9E-16 6.4E-21 155.7 7.7 79 149-227 67-147 (229)
83 2cph_A RNA binding motif prote 99.6 1.3E-15 4.6E-20 131.2 12.1 82 326-407 13-96 (107)
84 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.4E-16 1.2E-20 129.4 8.0 81 149-229 5-85 (87)
85 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.5E-16 1.2E-20 128.8 7.9 80 148-227 5-84 (85)
86 2dnz_A Probable RNA-binding pr 99.6 4.9E-16 1.7E-20 130.8 9.0 82 148-229 3-84 (95)
87 2e5h_A Zinc finger CCHC-type a 99.6 9.7E-16 3.3E-20 128.7 10.8 79 327-405 15-93 (94)
88 2cq0_A Eukaryotic translation 99.6 3.1E-16 1.1E-20 134.2 7.8 85 146-230 11-95 (103)
89 2dng_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 130.1 11.8 78 327-406 14-91 (103)
90 1x5t_A Splicing factor 3B subu 99.6 4.7E-16 1.6E-20 131.2 8.7 80 327-406 4-84 (96)
91 2i2y_A Fusion protein consists 99.6 3.1E-16 1.1E-20 144.0 8.2 117 189-318 10-149 (150)
92 2la6_A RNA-binding protein FUS 99.6 9.5E-16 3.3E-20 130.1 10.5 80 326-405 11-98 (99)
93 2dnm_A SRP46 splicing factor; 99.6 3.1E-16 1.1E-20 134.2 7.4 84 146-229 9-92 (103)
94 2do4_A Squamous cell carcinoma 99.6 1.7E-15 5.7E-20 128.9 11.9 79 327-406 16-94 (100)
95 2x1f_A MRNA 3'-END-processing 99.6 8.9E-16 3E-20 129.5 10.1 80 328-407 2-81 (96)
96 2dnh_A Bruno-like 5, RNA bindi 99.6 1.8E-15 6.2E-20 129.9 12.2 80 327-407 14-96 (105)
97 1whw_A Hypothetical protein ri 99.6 4.2E-16 1.4E-20 132.3 8.0 84 148-231 6-89 (99)
98 1x5u_A Splicing factor 3B subu 99.6 4.8E-16 1.6E-20 133.5 8.4 85 146-230 11-95 (105)
99 1oo0_B CG8781-PA, drosophila Y 99.6 1.6E-15 5.6E-20 131.4 11.7 82 326-407 24-105 (110)
100 2jrs_A RNA-binding protein 39; 99.6 1.2E-15 4.2E-20 131.6 10.7 82 325-406 23-104 (108)
101 2dgo_A Cytotoxic granule-assoc 99.6 6.9E-16 2.4E-20 134.9 9.2 85 146-230 11-95 (115)
102 2do0_A HnRNP M, heterogeneous 99.6 3.3E-15 1.1E-19 130.3 13.4 80 327-407 14-93 (114)
103 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.7E-16 1.6E-20 145.2 8.4 83 146-228 68-150 (165)
104 2dgs_A DAZ-associated protein 99.6 7E-16 2.4E-20 131.0 8.7 83 147-230 7-89 (99)
105 2cqc_A Arginine/serine-rich sp 99.6 5.1E-16 1.7E-20 130.7 7.8 82 147-228 12-93 (95)
106 2cpf_A RNA binding motif prote 99.6 6E-16 2.1E-20 131.1 8.3 83 148-230 3-88 (98)
107 3ns6_A Eukaryotic translation 99.6 1.5E-16 5.2E-21 135.3 4.5 80 149-228 5-91 (100)
108 2wbr_A GW182, gawky, LD47780P; 99.6 6.6E-16 2.3E-20 124.8 7.8 73 149-227 6-78 (89)
109 1s79_A Lupus LA protein; RRM, 99.6 8.8E-16 3E-20 131.1 8.8 80 327-408 10-89 (103)
110 2cpz_A CUG triplet repeat RNA- 99.6 6.1E-16 2.1E-20 135.2 8.1 83 148-230 23-105 (115)
111 2dhg_A TRNA selenocysteine ass 99.6 1.2E-15 4E-20 130.8 9.7 79 327-406 8-88 (104)
112 1x5t_A Splicing factor 3B subu 99.6 5.3E-16 1.8E-20 130.9 7.3 81 149-229 4-85 (96)
113 2dgp_A Bruno-like 4, RNA bindi 99.6 1.5E-15 5.2E-20 130.6 10.3 81 327-407 12-95 (106)
114 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.6E-20 127.0 9.0 79 150-229 6-84 (89)
115 1x4e_A RNA binding motif, sing 99.6 5.7E-16 1.9E-20 127.5 7.2 81 148-228 3-83 (85)
116 3ulh_A THO complex subunit 4; 99.6 2.1E-15 7.1E-20 130.0 11.1 80 326-406 27-106 (107)
117 2e5h_A Zinc finger CCHC-type a 99.6 6.4E-16 2.2E-20 129.8 7.6 81 147-227 13-93 (94)
118 2cq3_A RNA-binding protein 9; 99.6 4.3E-15 1.5E-19 127.0 12.9 81 326-408 13-93 (103)
119 2dgx_A KIAA0430 protein; RRM d 99.6 1.7E-15 6E-20 127.7 10.3 78 327-407 8-89 (96)
120 2dhg_A TRNA selenocysteine ass 99.6 1.2E-15 4.1E-20 130.8 9.3 82 147-229 6-89 (104)
121 1wi8_A EIF-4B, eukaryotic tran 99.6 2.5E-15 8.5E-20 128.8 11.3 78 327-406 14-92 (104)
122 2div_A TRNA selenocysteine ass 99.6 1.1E-15 3.8E-20 129.7 8.9 82 148-229 7-93 (99)
123 1x4h_A RNA-binding protein 28; 99.6 7.9E-16 2.7E-20 133.6 8.0 85 146-230 11-101 (111)
124 2jrs_A RNA-binding protein 39; 99.6 8.5E-16 2.9E-20 132.6 8.1 85 146-230 22-106 (108)
125 1s79_A Lupus LA protein; RRM, 99.6 6.6E-16 2.3E-20 131.8 7.2 78 148-227 9-86 (103)
126 3s7r_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 126.4 8.4 80 146-226 7-86 (87)
127 2do4_A Squamous cell carcinoma 99.6 8.6E-16 3E-20 130.7 7.8 82 147-229 14-95 (100)
128 4a8x_A RNA-binding protein wit 99.6 1.8E-15 6.1E-20 125.4 9.5 79 328-406 4-83 (88)
129 2dgu_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 127.4 11.9 75 326-408 9-83 (103)
130 1x5s_A Cold-inducible RNA-bind 99.6 4.6E-16 1.6E-20 132.9 6.1 83 147-229 9-91 (102)
131 2cpe_A RNA-binding protein EWS 99.6 1.5E-15 5E-20 132.3 9.3 80 327-406 14-101 (113)
132 2ywk_A Putative RNA-binding pr 99.6 1.3E-15 4.6E-20 128.1 8.6 81 147-228 13-93 (95)
133 2cph_A RNA binding motif prote 99.6 8.9E-16 3E-20 132.3 7.7 87 146-232 11-99 (107)
134 2ywk_A Putative RNA-binding pr 99.6 2E-15 6.9E-20 127.0 9.7 78 327-405 15-92 (95)
135 1p27_B RNA-binding protein 8A; 99.6 8.4E-16 2.9E-20 132.2 7.5 83 146-228 19-101 (106)
136 2div_A TRNA selenocysteine ass 99.6 1.2E-15 4.3E-20 129.4 8.5 79 327-405 8-91 (99)
137 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.6E-16 1.6E-20 132.9 5.8 83 147-229 9-91 (102)
138 2khc_A Testis-specific RNP-typ 99.6 2E-15 6.9E-20 132.6 10.0 80 326-405 38-117 (118)
139 2cqd_A RNA-binding region cont 99.6 1.4E-15 4.9E-20 133.1 9.0 83 146-229 13-95 (116)
140 2dh8_A DAZ-associated protein 99.6 1.7E-15 5.8E-20 130.1 9.2 83 147-230 13-95 (105)
141 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.4E-15 4.9E-20 140.5 9.3 85 145-229 34-118 (156)
142 2dgp_A Bruno-like 4, RNA bindi 99.6 7.3E-16 2.5E-20 132.6 6.9 85 146-230 9-96 (106)
143 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4E-20 134.1 8.2 81 147-227 37-117 (118)
144 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.5E-15 1.9E-19 126.4 12.2 79 327-407 14-92 (103)
145 2kxn_B Transformer-2 protein h 99.6 1.1E-15 3.8E-20 136.2 8.1 85 146-230 42-126 (129)
146 3s7r_A Heterogeneous nuclear r 99.6 2.7E-15 9.3E-20 124.0 9.9 77 327-404 10-86 (87)
147 3n9u_C Cleavage and polyadenyl 99.6 2.1E-15 7.2E-20 138.9 10.1 80 327-406 54-135 (156)
148 1sjq_A Polypyrimidine tract-bi 99.6 2.6E-15 8.9E-20 127.3 9.7 77 147-229 13-91 (105)
149 2wbr_A GW182, gawky, LD47780P; 99.6 1.7E-15 5.8E-20 122.4 8.1 72 328-405 7-78 (89)
150 2fy1_A RNA-binding motif prote 99.6 1.4E-15 4.7E-20 133.1 8.2 81 148-229 5-85 (116)
151 2cpe_A RNA-binding protein EWS 99.6 1.1E-15 3.9E-20 133.0 7.5 85 146-230 11-103 (113)
152 2dgv_A HnRNP M, heterogeneous 99.6 3.3E-15 1.1E-19 124.9 10.0 79 327-407 7-85 (92)
153 2dng_A Eukaryotic translation 99.6 1.6E-15 5.6E-20 129.7 8.3 81 147-229 12-92 (103)
154 3n9u_C Cleavage and polyadenyl 99.6 1.5E-15 5.1E-20 139.9 8.6 80 149-228 54-135 (156)
155 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.4E-20 129.3 7.6 82 146-227 9-98 (99)
156 2kxn_B Transformer-2 protein h 99.6 2.4E-15 8.3E-20 134.0 9.7 81 327-407 45-125 (129)
157 2dh8_A DAZ-associated protein 99.6 1.9E-15 6.6E-20 129.7 8.7 79 327-406 15-93 (105)
158 3ucg_A Polyadenylate-binding p 99.6 2.4E-15 8.2E-20 124.9 9.0 77 328-405 6-82 (89)
159 2dnh_A Bruno-like 5, RNA bindi 99.6 1.9E-15 6.4E-20 129.8 8.5 81 148-229 13-96 (105)
160 2cqp_A RNA-binding protein 12; 99.6 1.5E-15 5.1E-20 128.7 7.7 80 327-406 14-93 (98)
161 2hvz_A Splicing factor, argini 99.6 6.5E-16 2.2E-20 131.7 5.4 84 151-239 1-100 (101)
162 2dis_A Unnamed protein product 99.6 3.8E-15 1.3E-19 128.8 10.3 83 327-409 7-93 (109)
163 1p1t_A Cleavage stimulation fa 99.6 1.2E-15 4.1E-20 130.7 7.1 80 327-406 7-86 (104)
164 3ulh_A THO complex subunit 4; 99.6 1.9E-15 6.5E-20 130.2 8.3 81 146-227 25-105 (107)
165 2mss_A Protein (musashi1); RNA 99.6 9.2E-16 3.1E-20 123.0 5.8 74 330-404 1-74 (75)
166 1wi8_A EIF-4B, eukaryotic tran 99.6 1.8E-15 6.2E-20 129.7 8.0 80 148-229 13-93 (104)
167 2ek1_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 128.7 6.4 78 328-405 15-92 (95)
168 1oo0_B CG8781-PA, drosophila Y 99.6 1.5E-15 5.1E-20 131.6 7.5 83 146-228 22-104 (110)
169 2d9p_A Polyadenylate-binding p 99.6 1.4E-15 4.7E-20 130.1 7.1 81 147-229 12-92 (103)
170 4a8x_A RNA-binding protein wit 99.6 1.4E-15 4.8E-20 126.0 6.8 81 149-229 3-84 (88)
171 2krb_A Eukaryotic translation 99.6 1.9E-15 6.4E-20 123.2 7.4 73 150-224 1-80 (81)
172 1x4b_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 130.8 9.4 81 325-406 24-104 (116)
173 2hgn_A Heterogeneous nuclear r 99.6 4.4E-16 1.5E-20 140.0 3.9 77 326-405 44-120 (139)
174 2mss_A Protein (musashi1); RNA 99.6 8.1E-16 2.8E-20 123.3 5.0 74 152-226 1-74 (75)
175 1x4c_A Splicing factor, argini 99.6 8.1E-15 2.8E-19 126.5 11.6 73 327-406 14-91 (108)
176 2kt5_A RNA and export factor-b 99.6 5.6E-15 1.9E-19 130.9 10.8 86 326-412 33-118 (124)
177 2cq4_A RNA binding motif prote 99.6 2.6E-15 8.9E-20 131.0 8.5 80 327-407 24-103 (114)
178 2m2b_A RNA-binding protein 10; 99.6 1.4E-15 4.6E-20 136.3 6.8 81 326-407 21-107 (131)
179 2dgv_A HnRNP M, heterogeneous 99.6 4E-15 1.4E-19 124.4 9.2 81 148-230 6-86 (92)
180 1wez_A HnRNP H', FTP-3, hetero 99.6 3.6E-15 1.2E-19 127.1 9.1 77 327-406 14-90 (102)
181 1sjq_A Polypyrimidine tract-bi 99.6 2.8E-15 9.7E-20 127.1 8.2 75 327-407 15-91 (105)
182 1x4a_A Splicing factor, argini 99.6 9E-15 3.1E-19 126.4 11.5 77 327-406 21-97 (109)
183 1x4d_A Matrin 3; structural ge 99.6 4.6E-15 1.6E-19 125.7 9.4 75 327-407 14-91 (102)
184 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.6E-16 3E-20 123.8 4.6 76 151-227 1-76 (77)
185 2cqg_A TDP-43, TAR DNA-binding 99.6 1.2E-14 4.1E-19 124.2 12.0 79 327-407 14-92 (103)
186 2ek1_A RNA-binding protein 12; 99.6 9.8E-16 3.4E-20 128.9 5.1 80 149-228 14-93 (95)
187 1wg5_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 126.0 10.3 78 327-406 14-92 (104)
188 1p1t_A Cleavage stimulation fa 99.6 1.4E-15 4.8E-20 130.3 5.9 81 149-229 7-87 (104)
189 2m2b_A RNA-binding protein 10; 99.6 1.1E-15 3.9E-20 136.8 5.5 81 149-230 22-108 (131)
190 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.4E-15 4.7E-20 122.6 5.5 76 329-405 1-76 (77)
191 2jwn_A Embryonic polyadenylate 99.6 4.7E-15 1.6E-19 131.4 9.4 79 327-406 35-113 (124)
192 1u6f_A Tcubp1, RNA-binding pro 99.6 2.6E-15 8.9E-20 135.9 7.9 82 148-229 40-121 (139)
193 1x4e_A RNA binding motif, sing 99.6 7.8E-16 2.7E-20 126.7 4.0 77 327-403 4-80 (85)
194 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.2E-15 7.5E-20 128.1 6.9 79 326-406 17-96 (100)
195 2cq4_A RNA binding motif prote 99.6 2.1E-15 7.1E-20 131.6 6.9 77 150-227 25-101 (114)
196 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-15 6.2E-20 128.7 6.3 83 146-230 15-98 (100)
197 3ex7_B RNA-binding protein 8A; 99.6 2.1E-15 7.3E-20 134.1 7.0 83 146-228 18-100 (126)
198 2do0_A HnRNP M, heterogeneous 99.6 4.4E-15 1.5E-19 129.5 8.9 81 147-228 12-92 (114)
199 2cq3_A RNA-binding protein 9; 99.6 6E-15 2.1E-19 126.1 9.5 82 146-229 11-92 (103)
200 2rs2_A Musashi-1, RNA-binding 99.6 3E-15 1E-19 129.4 7.7 82 147-229 22-103 (109)
201 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.1E-14 3.6E-19 132.0 11.6 80 326-405 61-140 (140)
202 2cqp_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 128.9 5.3 82 148-229 13-94 (98)
203 2cq1_A PTB-like protein L; RRM 99.6 1.7E-14 5.7E-19 122.4 12.0 76 327-408 14-91 (101)
204 2cpy_A RNA-binding protein 12; 99.6 1.3E-15 4.6E-20 132.8 5.2 80 327-408 14-94 (114)
205 3r27_A HnRNP L, heterogeneous 99.6 6.3E-15 2.2E-19 123.6 8.9 75 327-407 20-96 (100)
206 2dnn_A RNA-binding protein 12; 99.6 6.5E-15 2.2E-19 126.8 9.2 76 327-405 15-90 (109)
207 2cpi_A CCR4-NOT transcription 99.6 5.4E-15 1.8E-19 128.3 8.8 80 327-406 14-99 (111)
208 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.4E-15 1.9E-19 126.4 8.7 81 147-229 12-92 (103)
209 2rs2_A Musashi-1, RNA-binding 99.6 7E-15 2.4E-19 127.1 9.4 80 326-406 23-102 (109)
210 2dgw_A Probable RNA-binding pr 99.6 9E-15 3.1E-19 122.0 9.8 77 327-406 9-85 (91)
211 1wex_A Hypothetical protein (r 99.6 1.3E-14 4.5E-19 123.8 11.0 75 327-407 14-90 (104)
212 2ki2_A SS-DNA binding protein 99.6 1.1E-15 3.6E-20 127.4 4.0 80 329-409 2-81 (90)
213 2nlw_A Eukaryotic translation 99.6 5.1E-15 1.8E-19 127.0 8.5 79 327-407 14-99 (105)
214 2ki2_A SS-DNA binding protein 99.6 1E-15 3.5E-20 127.5 3.8 79 151-230 2-80 (90)
215 2cqg_A TDP-43, TAR DNA-binding 99.6 7.1E-15 2.4E-19 125.7 9.2 83 146-230 11-93 (103)
216 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.6E-20 129.0 4.6 83 146-234 11-96 (102)
217 1wez_A HnRNP H', FTP-3, hetero 99.6 1.8E-15 6.3E-20 129.0 5.4 78 148-228 13-90 (102)
218 2dgx_A KIAA0430 protein; RRM d 99.6 3.9E-15 1.3E-19 125.5 7.2 80 148-230 7-90 (96)
219 1x4a_A Splicing factor, argini 99.6 7.9E-15 2.7E-19 126.8 9.3 81 147-230 19-99 (109)
220 2krb_A Eukaryotic translation 99.6 3.1E-15 1.1E-19 121.9 6.1 72 329-402 2-80 (81)
221 2nlw_A Eukaryotic translation 99.6 4.4E-15 1.5E-19 127.4 7.3 80 149-230 14-100 (105)
222 1wg5_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 127.6 6.8 80 148-229 13-93 (104)
223 2jwn_A Embryonic polyadenylate 99.6 5.9E-15 2E-19 130.8 8.1 80 149-229 35-114 (124)
224 1x4b_A Heterogeneous nuclear r 99.6 5.1E-15 1.7E-19 129.6 7.6 80 150-230 27-106 (116)
225 2fc9_A NCL protein; structure 99.6 1.7E-14 5.7E-19 122.9 10.5 77 327-407 14-90 (101)
226 3r27_A HnRNP L, heterogeneous 99.5 5.4E-15 1.9E-19 124.0 7.1 79 145-229 16-96 (100)
227 2kt5_A RNA and export factor-b 99.5 6E-15 2.1E-19 130.7 7.9 83 148-231 33-115 (124)
228 2cpi_A CCR4-NOT transcription 99.5 3.8E-15 1.3E-19 129.3 6.2 87 146-232 11-103 (111)
229 2dnq_A RNA-binding protein 4B; 99.5 2E-14 6.9E-19 119.6 10.4 73 327-407 7-79 (90)
230 1x5o_A RNA binding motif, sing 99.5 2.3E-14 7.8E-19 124.9 11.3 79 327-406 24-110 (114)
231 3beg_B Splicing factor, argini 99.5 1.1E-14 3.9E-19 127.0 9.3 68 327-401 15-82 (115)
232 2db1_A Heterogeneous nuclear r 99.5 8.7E-15 3E-19 128.4 8.4 79 327-407 16-97 (118)
233 2dgw_A Probable RNA-binding pr 99.5 6.4E-15 2.2E-19 122.9 7.2 80 147-229 7-86 (91)
234 1wel_A RNA-binding protein 12; 99.5 3.6E-15 1.2E-19 132.2 6.0 80 327-407 24-103 (124)
235 1wf1_A RNA-binding protein RAL 99.5 1.7E-14 5.7E-19 124.9 10.1 92 305-406 6-98 (110)
236 2cpy_A RNA-binding protein 12; 99.5 2.4E-15 8.1E-20 131.2 4.8 79 148-228 13-92 (114)
237 2cpj_A Non-POU domain-containi 99.5 5.4E-15 1.9E-19 125.4 6.7 86 146-237 11-96 (99)
238 2dis_A Unnamed protein product 99.5 5.9E-15 2E-19 127.6 7.0 83 148-230 6-92 (109)
239 1iqt_A AUF1, heterogeneous nuc 99.5 2.6E-15 8.8E-20 120.4 4.3 74 152-226 1-74 (75)
240 2hgl_A HNRPF protein, heteroge 99.5 5.3E-15 1.8E-19 132.5 6.8 78 327-406 43-123 (136)
241 2cpd_A Apobec-1 stimulating pr 99.5 3.7E-14 1.3E-18 120.3 11.5 76 323-406 10-87 (99)
242 2dnn_A RNA-binding protein 12; 99.5 5.3E-15 1.8E-19 127.3 6.2 76 150-228 16-91 (109)
243 2err_A Ataxin-2-binding protei 99.5 1E-14 3.6E-19 126.0 8.1 80 325-406 26-105 (109)
244 1x5o_A RNA binding motif, sing 99.5 9.7E-15 3.3E-19 127.3 7.7 76 148-224 23-98 (114)
245 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 9.4E-15 3.2E-19 132.3 7.9 78 149-226 62-139 (140)
246 2db1_A Heterogeneous nuclear r 99.5 3.5E-15 1.2E-19 130.9 4.8 79 147-227 14-95 (118)
247 2hgl_A HNRPF protein, heteroge 99.5 3.1E-15 1E-19 134.1 4.5 79 147-227 41-122 (136)
248 2lcw_A RNA-binding protein FUS 99.3 6.4E-16 2.2E-20 135.3 0.0 80 327-406 6-93 (116)
249 2cpx_A Hypothetical protein FL 99.5 5E-15 1.7E-19 129.3 5.7 81 327-407 24-104 (115)
250 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-14 8.2E-19 123.7 10.0 76 327-408 24-99 (109)
251 2ad9_A Polypyrimidine tract-bi 99.5 2.3E-14 7.8E-19 124.7 9.7 75 327-407 30-106 (119)
252 2jvr_A Nucleolar protein 3; RN 99.5 8.7E-15 3E-19 126.2 7.0 75 328-406 28-103 (111)
253 2fc8_A NCL protein; structure 99.5 3.9E-14 1.3E-18 120.8 11.0 78 326-406 13-90 (102)
254 2lea_A Serine/arginine-rich sp 99.5 1.4E-14 4.8E-19 130.2 8.5 120 194-320 6-130 (135)
255 2a3j_A U1 small nuclear ribonu 99.5 1.8E-14 6.2E-19 127.5 9.1 78 327-407 28-109 (127)
256 1x4f_A Matrin 3; structural ge 99.5 1.1E-14 3.7E-19 125.3 7.2 77 327-409 24-103 (112)
257 1x4c_A Splicing factor, argini 99.5 2.3E-14 8E-19 123.6 9.3 75 148-229 13-92 (108)
258 1iqt_A AUF1, heterogeneous nuc 99.5 4.3E-15 1.5E-19 119.1 4.1 75 330-405 1-75 (75)
259 2cq1_A PTB-like protein L; RRM 99.5 1.6E-14 5.6E-19 122.4 7.8 78 146-229 11-90 (101)
260 2lmi_A GRSF-1, G-rich sequence 99.5 4.2E-15 1.4E-19 128.0 4.2 80 147-228 8-90 (107)
261 2err_A Ataxin-2-binding protei 99.5 1.2E-14 4.1E-19 125.6 7.0 83 145-229 24-106 (109)
262 2kvi_A Nuclear polyadenylated 99.5 2.6E-14 9E-19 120.4 8.9 74 327-408 9-83 (96)
263 1wel_A RNA-binding protein 12; 99.5 2.5E-15 8.5E-20 133.2 2.6 80 148-228 23-102 (124)
264 2dha_A FLJ20171 protein; RRM d 99.5 8.5E-15 2.9E-19 128.8 5.9 79 147-227 20-102 (123)
265 2dgt_A RNA-binding protein 30; 99.5 5.2E-14 1.8E-18 117.6 10.3 72 327-406 9-80 (92)
266 1x4f_A Matrin 3; structural ge 99.5 6.3E-15 2.1E-19 126.7 4.6 84 147-236 22-108 (112)
267 2a3j_A U1 small nuclear ribonu 99.5 1.7E-14 6E-19 127.6 7.5 83 146-231 25-111 (127)
268 2ad9_A Polypyrimidine tract-bi 99.5 1.2E-14 4.2E-19 126.3 6.4 78 146-229 27-106 (119)
269 2hgn_A Heterogeneous nuclear r 99.5 5.1E-15 1.7E-19 133.0 4.0 79 148-229 44-122 (139)
270 3pgw_S U1-70K; protein-RNA com 99.5 7E-15 2.4E-19 158.1 5.8 145 166-317 8-182 (437)
271 1why_A Hypothetical protein ri 99.5 6.3E-14 2.1E-18 118.3 10.5 74 327-406 16-91 (97)
272 2hgm_A HNRPF protein, heteroge 99.5 1.8E-14 6.2E-19 127.0 7.3 79 146-227 38-118 (126)
273 2lmi_A GRSF-1, G-rich sequence 99.5 8.5E-15 2.9E-19 126.1 5.1 78 327-406 10-90 (107)
274 2hvz_A Splicing factor, argini 99.5 2.3E-14 7.9E-19 122.0 7.7 74 329-407 1-74 (101)
275 2la4_A Nuclear and cytoplasmic 99.5 5.6E-14 1.9E-18 119.6 10.1 77 147-229 24-100 (101)
276 2ytc_A PRE-mRNA-splicing facto 99.5 4.8E-14 1.6E-18 115.9 9.4 73 327-405 11-84 (85)
277 2dnq_A RNA-binding protein 4B; 99.5 3.7E-14 1.3E-18 118.0 8.7 75 148-230 6-80 (90)
278 2cpj_A Non-POU domain-containi 99.5 4.7E-14 1.6E-18 119.6 9.4 75 327-407 14-88 (99)
279 2lcw_A RNA-binding protein FUS 99.3 1.5E-15 5.2E-20 132.9 0.0 82 148-229 5-94 (116)
280 1whx_A Hypothetical protein ri 99.5 5.6E-14 1.9E-18 121.8 9.9 76 327-408 9-84 (111)
281 2xs2_A Deleted in azoospermia- 99.5 2.9E-14 1E-18 121.6 8.0 80 327-409 8-87 (102)
282 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.5E-19 125.1 5.8 79 147-229 25-104 (111)
283 1wex_A Hypothetical protein (r 99.5 2E-14 7E-19 122.6 6.8 77 147-229 12-90 (104)
284 2cq2_A Hypothetical protein LO 99.5 3.2E-14 1.1E-18 122.3 8.0 79 328-412 25-110 (114)
285 2j8a_A Histone-lysine N-methyl 99.5 1.8E-14 6E-19 124.3 6.1 77 329-405 3-93 (136)
286 3lqv_A PRE-mRNA branch site pr 99.5 5.8E-14 2E-18 122.6 9.6 78 327-407 7-84 (115)
287 1x4g_A Nucleolysin TIAR; struc 99.5 5.5E-14 1.9E-18 121.4 9.3 80 146-231 21-100 (109)
288 2dnp_A RNA-binding protein 14; 99.5 7.5E-14 2.6E-18 116.1 9.8 73 327-407 8-80 (90)
289 2f3j_A RNA and export factor b 99.5 1.8E-14 6.3E-19 135.6 6.7 82 148-230 86-167 (177)
290 2dha_A FLJ20171 protein; RRM d 99.5 1.5E-14 5.3E-19 127.1 5.8 77 328-406 23-103 (123)
291 2f3j_A RNA and export factor b 99.5 3.7E-14 1.3E-18 133.5 8.6 82 326-408 86-167 (177)
292 1fj7_A Nucleolin RBD1, protein 99.5 5.1E-15 1.7E-19 126.1 2.3 78 327-406 16-93 (101)
293 2e5g_A U6 snRNA-specific termi 99.5 6.1E-14 2.1E-18 117.6 8.9 73 327-405 7-79 (94)
294 2fc9_A NCL protein; structure 99.5 2E-14 7E-19 122.3 6.1 80 147-230 12-91 (101)
295 1wg1_A KIAA1579 protein, homol 99.5 2E-14 6.7E-19 119.1 5.8 83 149-238 4-86 (88)
296 1why_A Hypothetical protein ri 99.5 4.1E-14 1.4E-18 119.5 7.8 78 147-230 14-93 (97)
297 2ytc_A PRE-mRNA-splicing facto 99.5 5.5E-14 1.9E-18 115.5 8.4 75 147-227 9-84 (85)
298 2e5j_A Methenyltetrahydrofolat 99.5 6.7E-14 2.3E-18 118.2 8.8 76 327-407 18-93 (97)
299 2e5g_A U6 snRNA-specific termi 99.5 1.2E-13 4.1E-18 115.9 10.3 77 147-229 5-81 (94)
300 2xnq_A Nuclear polyadenylated 99.5 1.2E-13 4E-18 116.6 10.2 72 327-406 21-93 (97)
301 1fj7_A Nucleolin RBD1, protein 99.5 3.7E-15 1.3E-19 126.9 0.9 80 148-229 15-94 (101)
302 2fc8_A NCL protein; structure 99.5 3E-14 1E-18 121.5 6.6 82 146-230 11-92 (102)
303 2hgm_A HNRPF protein, heteroge 99.5 3.8E-14 1.3E-18 124.9 7.4 77 327-406 41-119 (126)
304 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.4E-18 119.3 7.3 78 327-407 7-88 (97)
305 2xs2_A Deleted in azoospermia- 99.5 2.3E-14 7.8E-19 122.3 5.6 77 149-228 8-84 (102)
306 2cpx_A Hypothetical protein FL 99.5 7.5E-15 2.6E-19 128.2 2.4 82 148-229 23-104 (115)
307 2jvo_A Nucleolar protein 3; nu 99.5 7.5E-14 2.6E-18 120.3 8.2 78 145-230 26-103 (108)
308 3egn_A RNA-binding protein 40; 99.5 7.3E-15 2.5E-19 133.7 1.9 84 146-229 41-129 (143)
309 2xnq_A Nuclear polyadenylated 99.5 1.1E-13 3.7E-18 116.9 8.9 78 144-229 16-94 (97)
310 1whx_A Hypothetical protein ri 99.5 9.5E-15 3.3E-19 126.6 2.4 82 149-238 9-90 (111)
311 2e5j_A Methenyltetrahydrofolat 99.5 4.4E-14 1.5E-18 119.3 6.4 78 148-230 17-94 (97)
312 2jvo_A Nucleolar protein 3; nu 99.5 8.1E-14 2.8E-18 120.1 8.2 73 326-406 29-101 (108)
313 2dnl_A Cytoplasmic polyadenyla 99.5 2.9E-14 1E-18 124.3 5.4 74 148-224 6-82 (114)
314 1nu4_A U1A RNA binding domain; 99.5 3.6E-14 1.2E-18 119.8 5.9 82 147-231 5-90 (97)
315 1fjc_A Nucleolin RBD2, protein 99.5 6.4E-14 2.2E-18 118.0 7.3 75 327-406 15-89 (96)
316 2cqh_A IGF-II mRNA-binding pro 99.5 6.4E-14 2.2E-18 117.2 7.2 73 327-406 7-81 (93)
317 2j8a_A Histone-lysine N-methyl 99.5 4.4E-14 1.5E-18 121.8 6.1 79 151-229 3-95 (136)
318 2la4_A Nuclear and cytoplasmic 99.5 5.3E-14 1.8E-18 119.7 6.3 72 328-405 27-98 (101)
319 2kvi_A Nuclear polyadenylated 99.5 5.7E-14 1.9E-18 118.4 6.5 75 146-228 6-81 (96)
320 2dnp_A RNA-binding protein 14; 99.5 8.6E-14 3E-18 115.7 7.3 76 147-230 6-81 (90)
321 2pe8_A Splicing factor 45; RRM 99.5 2.9E-13 1E-17 115.6 10.7 80 327-406 7-92 (105)
322 2dgt_A RNA-binding protein 30; 99.5 8.1E-14 2.8E-18 116.4 7.1 77 146-230 6-82 (92)
323 2dgu_A Heterogeneous nuclear r 99.5 8E-14 2.7E-18 119.1 7.1 74 148-229 9-82 (103)
324 3pgw_A U1-A; protein-RNA compl 99.5 8.3E-14 2.8E-18 141.8 8.4 76 148-228 205-281 (282)
325 1wg1_A KIAA1579 protein, homol 99.4 1.8E-13 6.2E-18 113.2 8.7 74 327-407 4-77 (88)
326 3beg_B Splicing factor, argini 99.4 7.2E-14 2.5E-18 121.9 6.3 69 149-224 15-83 (115)
327 2cpd_A Apobec-1 stimulating pr 99.4 1.8E-13 6.1E-18 116.0 8.5 75 148-230 13-89 (99)
328 2e44_A Insulin-like growth fac 99.4 2.7E-13 9.3E-18 114.1 9.4 77 327-407 14-91 (96)
329 1fjc_A Nucleolin RBD2, protein 99.4 3E-14 1E-18 120.0 3.4 77 148-229 14-90 (96)
330 1x5p_A Negative elongation fac 99.4 5.4E-13 1.9E-17 112.5 11.1 72 327-406 14-85 (97)
331 3zzy_A Polypyrimidine tract-bi 99.4 4.9E-13 1.7E-17 117.7 11.1 74 328-406 28-104 (130)
332 2diu_A KIAA0430 protein; struc 99.4 2.1E-13 7.2E-18 111.2 8.0 79 148-236 6-90 (96)
333 1sjr_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 122.5 10.6 77 327-407 45-123 (164)
334 1wf1_A RNA-binding protein RAL 99.4 1.8E-13 6.3E-18 118.3 7.7 73 149-229 26-99 (110)
335 3egn_A RNA-binding protein 40; 99.4 4E-14 1.4E-18 128.7 3.5 81 327-407 44-129 (143)
336 2e5i_A Heterogeneous nuclear r 99.4 9.3E-13 3.2E-17 115.5 12.0 74 327-406 24-100 (124)
337 2voo_A Lupus LA protein; RNA-b 99.4 8.4E-13 2.9E-17 126.1 12.5 123 284-408 63-187 (193)
338 2e44_A Insulin-like growth fac 99.4 1.3E-13 4.5E-18 116.1 5.5 78 149-230 14-92 (96)
339 2dnl_A Cytoplasmic polyadenyla 99.4 3.4E-13 1.2E-17 117.4 8.1 74 327-403 7-83 (114)
340 2diu_A KIAA0430 protein; struc 99.4 6.7E-13 2.3E-17 108.2 9.0 72 329-410 10-86 (96)
341 2cqh_A IGF-II mRNA-binding pro 99.4 1.1E-13 3.9E-18 115.7 4.6 75 148-229 6-82 (93)
342 2hzc_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 110.0 8.4 70 327-403 5-85 (87)
343 1x5p_A Negative elongation fac 99.4 6.4E-13 2.2E-17 112.1 9.0 76 147-230 12-87 (97)
344 2cq2_A Hypothetical protein LO 99.4 2.8E-13 9.6E-18 116.5 6.6 73 147-225 22-101 (114)
345 2pe8_A Splicing factor 45; RRM 99.4 7.7E-13 2.6E-17 113.0 9.2 82 147-228 5-92 (105)
346 3d2w_A TAR DNA-binding protein 99.4 7.2E-13 2.5E-17 109.8 8.8 70 327-405 10-81 (89)
347 2hzc_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 111.2 6.6 70 149-225 5-85 (87)
348 3zzy_A Polypyrimidine tract-bi 99.4 1.1E-12 3.8E-17 115.4 9.0 77 149-230 27-106 (130)
349 3d2w_A TAR DNA-binding protein 99.4 6.5E-13 2.2E-17 110.0 7.0 74 147-229 8-83 (89)
350 1sjr_A Polypyrimidine tract-bi 99.4 1.1E-12 3.7E-17 120.0 8.0 78 149-230 45-124 (164)
351 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-12 4.1E-17 125.0 8.5 78 149-228 108-185 (193)
352 3v4m_A Splicing factor U2AF 65 99.3 2.2E-12 7.6E-17 110.2 8.8 79 327-405 4-94 (105)
353 2bz2_A Negative elongation fac 99.3 1.6E-12 5.4E-17 114.3 8.1 73 327-407 38-110 (121)
354 1wf0_A TDP-43, TAR DNA-binding 99.3 5.2E-13 1.8E-17 110.4 3.7 74 149-229 4-77 (88)
355 2e5i_A Heterogeneous nuclear r 99.3 3.2E-12 1.1E-16 112.0 8.4 75 151-231 26-103 (124)
356 3ue2_A Poly(U)-binding-splicin 99.3 4.5E-12 1.5E-16 110.4 9.2 80 327-406 19-107 (118)
357 1wf0_A TDP-43, TAR DNA-binding 99.3 3E-12 1E-16 105.8 7.7 68 327-403 4-73 (88)
358 3u1l_A PRE-mRNA-splicing facto 99.3 2.5E-12 8.6E-17 125.6 8.3 79 327-411 133-232 (240)
359 2bz2_A Negative elongation fac 99.3 1.9E-12 6.6E-17 113.7 6.6 77 146-230 35-111 (121)
360 1jmt_A Splicing factor U2AF 35 99.3 1.9E-12 6.4E-17 110.5 4.5 72 333-405 20-103 (104)
361 2dit_A HIV TAT specific factor 99.3 1.8E-11 6.2E-16 106.0 10.1 76 327-406 14-100 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.2 5.3E-12 1.8E-16 123.3 6.7 78 147-230 131-229 (240)
363 2dit_A HIV TAT specific factor 99.2 1.3E-11 4.6E-16 106.9 8.0 84 146-233 11-105 (112)
364 3v4m_A Splicing factor U2AF 65 99.2 1.3E-11 4.6E-16 105.3 7.0 79 149-227 4-94 (105)
365 3ue2_A Poly(U)-binding-splicin 99.2 2.9E-11 9.9E-16 105.2 6.9 79 149-227 19-106 (118)
366 1jmt_A Splicing factor U2AF 35 99.2 8E-12 2.7E-16 106.5 3.0 72 155-227 20-103 (104)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.8E-10 6.3E-15 96.9 9.5 62 338-406 27-88 (100)
368 3s6e_A RNA-binding protein 39; 99.1 1.8E-10 6E-15 99.6 8.3 76 327-406 6-91 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.0 6.4E-10 2.2E-14 93.6 8.9 74 149-229 9-89 (100)
370 3tht_A Alkylated DNA repair pr 99.0 3.3E-10 1.1E-14 116.6 8.5 64 327-396 17-82 (345)
371 3tht_A Alkylated DNA repair pr 99.0 5.3E-10 1.8E-14 115.1 7.8 66 147-218 15-82 (345)
372 1owx_A Lupus LA protein, SS-B, 98.9 2.4E-09 8.4E-14 92.4 8.3 72 327-404 17-92 (121)
373 3s6e_A RNA-binding protein 39; 98.9 2.4E-09 8.2E-14 92.4 6.6 75 149-227 6-90 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.8 1.2E-08 4.1E-13 82.4 6.9 55 343-406 30-84 (91)
375 1owx_A Lupus LA protein, SS-B, 98.7 9.3E-09 3.2E-13 88.8 5.1 69 147-221 15-87 (121)
376 3dxb_A Thioredoxin N-terminall 98.6 5.6E-08 1.9E-12 94.8 8.4 67 339-405 140-210 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.6 5.1E-08 1.7E-12 78.8 5.4 71 149-228 6-84 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 3E-08 1E-12 80.4 3.1 68 329-405 16-92 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.4 1.5E-07 5.2E-12 76.3 3.5 71 148-227 13-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.3 9E-07 3.1E-11 86.2 8.5 79 149-227 123-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.2 2.5E-06 8.5E-11 70.4 7.3 70 328-403 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.9 2.1E-05 7.1E-10 65.0 7.3 73 146-224 17-94 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.6 0.00027 9.2E-09 58.0 9.3 86 149-243 7-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.2 0.004 1.4E-07 51.1 10.7 90 229-341 7-99 (104)
385 1wey_A Calcipressin 1; structu 96.8 0.0011 3.8E-08 54.6 4.9 73 328-406 5-82 (104)
386 1uw4_A UPF3X; nonsense mediate 96.7 0.0077 2.6E-07 48.8 8.5 70 151-220 2-73 (91)
387 1uw4_A UPF3X; nonsense mediate 96.6 0.0071 2.4E-07 49.0 8.1 70 329-398 2-73 (91)
388 1wey_A Calcipressin 1; structu 96.6 0.0027 9.2E-08 52.4 5.5 73 150-228 5-82 (104)
389 1whv_A Poly(A)-specific ribonu 96.1 0.008 2.7E-07 48.7 5.5 55 328-391 16-70 (100)
390 3ctr_A Poly(A)-specific ribonu 96.1 0.0068 2.3E-07 49.3 5.1 55 328-391 6-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 96.1 0.022 7.5E-07 48.3 8.2 65 327-399 23-87 (119)
392 3ctr_A Poly(A)-specific ribonu 95.9 0.017 5.8E-07 47.0 6.5 54 151-213 7-60 (101)
393 1whv_A Poly(A)-specific ribonu 95.8 0.014 4.8E-07 47.3 5.8 55 230-296 16-70 (100)
394 1wwh_A Nucleoporin 35, nucleop 95.3 0.048 1.6E-06 46.2 7.5 63 149-219 23-85 (119)
395 3pq1_A Poly(A) RNA polymerase; 94.8 0.007 2.4E-07 64.3 1.1 64 142-211 45-108 (464)
396 2l08_A Regulator of nonsense t 94.3 0.045 1.5E-06 44.6 4.6 72 149-220 8-81 (97)
397 2l08_A Regulator of nonsense t 94.2 0.059 2E-06 43.9 4.9 71 328-398 9-81 (97)
398 3p3d_A Nucleoporin 53; structu 92.1 0.13 4.4E-06 44.2 4.1 74 329-404 8-95 (132)
399 3p3d_A Nucleoporin 53; structu 90.9 0.08 2.8E-06 45.5 1.6 75 149-225 6-94 (132)
400 3pq1_A Poly(A) RNA polymerase; 90.3 0.11 3.8E-06 55.1 2.5 55 328-388 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 72.4 6.2 0.00021 42.5 7.2 55 328-391 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 69.4 6.3 0.00021 42.5 6.4 55 150-213 440-494 (507)
403 4eyt_A Telomerase associated p 44.5 89 0.0031 24.4 7.2 56 328-391 12-67 (129)
404 4eyt_A Telomerase associated p 43.1 1.1E+02 0.0039 23.8 7.6 58 147-212 9-66 (129)
405 2g0c_A ATP-dependent RNA helic 29.7 1E+02 0.0035 23.0 5.7 58 339-405 12-74 (76)
406 3lpe_A Putative transcription 28.5 2E+02 0.0067 22.6 7.3 52 177-252 40-91 (92)
407 3tj1_A RNA polymerase I-specif 26.5 22 0.00075 39.1 1.6 8 166-173 385-392 (649)
408 2pk2_A Cyclin-T1, protein TAT; 23.7 17 0.00058 37.1 0.0 14 339-352 228-241 (358)
409 4e8u_A Putative uncharacterize 20.4 1.3E+02 0.0043 27.0 5.0 53 151-206 13-76 (172)
410 3zzp_A TS9, ribosomal protein 20.0 2.2E+02 0.0075 21.6 5.7 59 194-254 7-68 (77)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.5e-41 Score=345.07 Aligned_cols=244 Identities=19% Similarity=0.305 Sum_probs=224.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
...+++|||+|||+++|+++|+++|++|| |..|.+ +.++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 33679999999999999999999999999 999988 46789999999999999999999999999999999999
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
+...++|||+|||..+|+++|+++|+.||. |..+.++.+. .++.++|||||+|.+.++|.+|+..|++..+ .+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g 164 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGS--LERCFLVYSE-RTGQSKGYGFAEYMKKDSAARAKSDLLGKPL----GP 164 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCC--eeEEEEEeeC-CCCccceEEEEEECCHHHHHHHHHHhCCCEe----CC
Confidence 999999999999999999999999999999 9999999874 4889999999999999999999999999877 58
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCC-CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~-t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~ 385 (648)
+.|.|.++.+...... ....++|||+|||..+ |+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+
T Consensus 165 ~~i~v~~a~~~~~~~~--~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 165 RTLYVHWTDAGQLTPA--LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp EECEEEECCGGGCCTT--TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHH
T ss_pred cEEEEEECCCCCCCcc--cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHH
Confidence 9999999876543222 2356789999999995 999999999999999999999985 78999999999999999999
Q ss_pred HHHHhCCCeecCCeeEEEEEee
Q 006370 386 CINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
|+..|||..|.|+.|.|.++..
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCS
T ss_pred HHHHhCCCccCCeEEEEEEecC
Confidence 9999999999999999988643
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.5e-41 Score=350.09 Aligned_cols=248 Identities=20% Similarity=0.313 Sum_probs=213.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|+|+++..+ ++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 4457899999999999999999999999999999999998643 58999999999999999995 89999999999998
Q ss_pred CCCCCCcceecccCCCCcHHHHHHHHhhcC-CcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006370 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (648)
Q Consensus 226 ~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G-~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~ 304 (648)
.+ ..++|||+|||..+|+++|+++|+.|| . |..|.|+.+. .+.++|||||+|.+.++|.+|+..|++..+
T Consensus 114 ~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 184 (292)
T 2ghp_A 114 HL-TECTLWMTNFPPSYTQRNIRDLLQDINVV--ALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI---- 184 (292)
T ss_dssp EC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC--CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE----
T ss_pred EC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC--eEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe----
Confidence 76 478999999999999999999999999 8 9999999875 478999999999999999999999999888
Q ss_pred CCcceeeeccCCCCCCCcc--ccccceeeeecCCCCC-CCHHHHHHhhcccCcEEEEEEeecCC-CCCcccEEEEEeCCH
Q 006370 305 PERTVKVAFAEPLREPDPE--IMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFSTH 380 (648)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~~--~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~d~~-~~~~~G~afV~F~~~ 380 (648)
.++.|.|.++.+....... .....++|||+|||.. +|+++|+++|++||.|..|.|+++.. |+.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 5899999999876544322 3445689999999999 99999999999999999999999876 589999999999999
Q ss_pred HHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 381 EAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 381 ~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
++|.+|| .|||..|.|+.|.|.++.
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEec
Confidence 9999999 999999999998888764
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.7e-30 Score=254.44 Aligned_cols=180 Identities=26% Similarity=0.427 Sum_probs=152.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
+.+||||+|||+++|+++|+++|++||+|++|+|++++.|++++|||||+|.+.++|.+||+.|++..+.|+.|.+..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999886654
Q ss_pred C--------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 229 D--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 229 ~--------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
. ..+|||+|||..+|+++|+++|++||. |..|+|+.+ .+.++|||||+|.+.++|.+|++.||+..+
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCC--eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3 568999999999999999999999999 999999987 456899999999999999999999999988
Q ss_pred eeCCCCcceeeeccCCCCCCCccccccceeeeecCCC
Q 006370 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337 (648)
Q Consensus 301 ~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp 337 (648)
.++.|.|.++.++.............++..++|
T Consensus 169 ----~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 169 ----NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp ----TTEECEEEECCCHHHHHHHHC------------
T ss_pred ----CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 589999999987543333333333444444444
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2e-28 Score=239.76 Aligned_cols=168 Identities=21% Similarity=0.329 Sum_probs=148.9
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
+.+.++|||+|||+++|+++|+++|++||. |..|+|+++. .+++++|||||+|.+.++|.+|++.+++..+ .+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~----~g 84 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDM-ITRRSLGYAYVNFQQPADAERALDTMNFDVI----KG 84 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCC--EEEEEEeccc-CCCCccccccceeCCHHHHHHHHHHhhhhhc----CC
Confidence 445789999999999999999999999999 9999999984 4899999999999999999999999999887 58
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
+.+++.++..... ......++|||+|||+.+|+++|+++|++||.|+.|.|+++. +.++|||||+|.+.++|.+|
T Consensus 85 ~~i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 85 KPVRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp EECEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHH
T ss_pred ccccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHH
Confidence 8999888765332 222345689999999999999999999999999999999885 45799999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEe
Q 006370 387 INAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~ 406 (648)
|+.|||..|.|+.|.|.++.
T Consensus 160 i~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHhCCCEECCEEEEEEEcC
Confidence 99999999999999998764
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-28 Score=227.78 Aligned_cols=165 Identities=19% Similarity=0.382 Sum_probs=151.3
Q ss_pred CcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCccee
Q 006370 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (648)
Q Consensus 231 ~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~ 310 (648)
++|||+|||.++|+++|+++|++||. |..|.++.+. +++++|||||+|.+.++|.+|+..|++..+ .++.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP--IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC--EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC--eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeE
Confidence 57999999999999999999999998 9999999985 578999999999999999999999999988 589999
Q ss_pred eeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006370 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (648)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l 390 (648)
|.++.+..... ....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|
T Consensus 73 v~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 73 INWAFQSQQSS---SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EEECCCCCCCC---CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEcCCCCCCC---CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 99987654422 234679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeecCCeeEEEEEe
Q 006370 391 NNKEFSDGNSKVKLRA 406 (648)
Q Consensus 391 ng~~~~g~~i~v~~~~ 406 (648)
||..|.|+.|+|.++.
T Consensus 150 ~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 150 QGQDLNGRPLRINWAA 165 (166)
T ss_dssp TTCEETTEECEEEESC
T ss_pred CCCccCCcEEEEEecC
Confidence 9999999999998863
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=5.4e-28 Score=237.01 Aligned_cols=175 Identities=20% Similarity=0.388 Sum_probs=153.4
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l 309 (648)
.++|||+|||.++|+++|+++|+.||. |..|.|+.+. .+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~l 100 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGP--IKSIDMSWDS-VTMKHKGFAFVEYEVPEAAQLALEQMNSVML----GGRNI 100 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSC--EEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC----C-CCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCC--EEEEEEeecC-CCCccCceEEEEeCCHHHHHHHHHHccCCee----CCeeE
Confidence 468999999999999999999999998 9999999884 4788999999999999999999999999887 48999
Q ss_pred eeeccCCCCCCCcc------ccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 310 KVAFAEPLREPDPE------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 310 ~v~~a~~~~~~~~~------~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
.|.++.......+. .....++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 99887655432211 223457999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEEeecCCC
Q 006370 384 VACINAINNKEFSDGNSKVKLRARLSNP 411 (648)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (648)
.+|+..|||..|.|+.|.|.++.....+
T Consensus 181 ~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 181 QDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999999887654333
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=9.9e-28 Score=225.33 Aligned_cols=165 Identities=23% Similarity=0.396 Sum_probs=151.4
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
+.++|||+|||.++|+++|+++|++||. |..|.++.+. .+++++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~ 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGP--INTCRIMRDY-KTGYSYGYAFVDFTSEMDSQRAIKVLNGITV----RNKR 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSC--EEEEECCEET-TTTEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEEeC-CCCccceEEEEEECCHHHHHHHHHhcCCCEe----CCcE
Confidence 3579999999999999999999999998 9999999884 4789999999999999999999999999888 5899
Q ss_pred eeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006370 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (648)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (648)
|.|.++.+..... ..++|+|+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+.
T Consensus 75 l~v~~~~~~~~~~-----~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 75 LKVSYARPGGESI-----KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp CEEEECCCCSSTT-----TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEecCCCcccC-----CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 9999988755432 35799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCCeecC--CeeEEEEE
Q 006370 389 AINNKEFSD--GNSKVKLR 405 (648)
Q Consensus 389 ~lng~~~~g--~~i~v~~~ 405 (648)
.|||..|.| +.|+|.++
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 999999988 88887763
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.6e-27 Score=223.41 Aligned_cols=163 Identities=23% Similarity=0.386 Sum_probs=148.4
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l 309 (648)
+++|||+|||..+|+++|+++|+.||. |..|.++.+. .+++++|+|||+|.+.++|.+|++.|++..+ .++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~--i~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~l 74 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGE--IESCKLVRDK-ITGQSLGYGFVNYIDPKDAEKAINTLNGLRL----QTKTI 74 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCC-CCCcceeEEEEEECCHHHHHHHHHHcCCCcc----CCceE
Confidence 579999999999999999999999998 9999999984 4789999999999999999999999999887 58999
Q ss_pred eeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 006370 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (648)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ 389 (648)
.|.++.+... ....++|+|+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..
T Consensus 75 ~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 75 KVSYARPSSA-----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp EEEECCCCCG-----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEecCCCcc-----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 9999876543 22457899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCeecCCeeEEEE
Q 006370 390 INNKEFSDGNSKVKL 404 (648)
Q Consensus 390 lng~~~~g~~i~v~~ 404 (648)
|||..|.|+.+.|.+
T Consensus 150 l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 150 LNGQKPSGATEPITV 164 (167)
T ss_dssp HTTCCCTTCSSCCEE
T ss_pred hcCCccCCCccceEE
Confidence 999999998744433
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=5.5e-28 Score=236.97 Aligned_cols=165 Identities=18% Similarity=0.387 Sum_probs=150.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999986553
Q ss_pred C-----------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHH
Q 006370 229 D-----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (648)
Q Consensus 229 ~-----------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A 291 (648)
. .++|||+|||..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK--IKSATLARDP-TTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcCceEEEEecCHHHHHHH
Confidence 3 479999999999999999999999998 9999999984 4789999999999999999999
Q ss_pred HHHhCCCCeeeCCCCcceeeeccCCCCCC
Q 006370 292 YKRLQKPDVVFGHPERTVKVAFAEPLREP 320 (648)
Q Consensus 292 ~~~l~~~~~~~g~~~~~l~v~~a~~~~~~ 320 (648)
++.|++..+ .++.|.|.++.+....
T Consensus 184 ~~~l~g~~~----~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 184 VSSMNLFDL----GGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHTTCBC----SSSBCEEEECSSCSST
T ss_pred HHHccCCEe----CCcEEEEEEecCCCCC
Confidence 999999987 5899999999876443
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=7.8e-28 Score=226.06 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=147.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999886654
Q ss_pred ------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeee
Q 006370 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (648)
Q Consensus 229 ------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~ 302 (648)
..++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|+|||+|.+.++|.+|++.|++..+.
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 157 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGS--IVQKNILRDK-LTGRPRGVAFVRYNKREEAQEAISALNNVIPE- 157 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCc--EEEEEEEEcC-CCCCcceEEEEEECCHHHHHHHHHHhcCCEec-
Confidence 4679999999999999999999999998 9999999884 47889999999999999999999999999772
Q ss_pred CCCCcceeeecc
Q 006370 303 GHPERTVKVAFA 314 (648)
Q Consensus 303 g~~~~~l~v~~a 314 (648)
+ ..+.|.|.||
T Consensus 158 g-~~~~l~V~~A 168 (168)
T 1b7f_A 158 G-GSQPLSVRLA 168 (168)
T ss_dssp T-CSSCCEEEEC
T ss_pred C-CCeEEEEEeC
Confidence 1 1388888775
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=1.1e-27 Score=231.15 Aligned_cols=172 Identities=22% Similarity=0.401 Sum_probs=146.9
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
...++|||+|||..+|+++|+++|+.||. |..|.|+.++ .+++++|||||+|.+.++|.+|++. ++..+ .++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~----~g~ 82 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGT--LTDCVVMRDP-NTKRSRGFGFVTYATVEEVDAAMNA-RPHKV----DGR 82 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHT-CSCEE----TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEEcC-CCCCccceEEEEeCCHHHHHHHHhc-CCCEE----CCE
Confidence 45689999999999999999999999999 9999999984 4789999999999999999999976 66655 589
Q ss_pred ceeeeccCCCCCCC-ccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 308 TVKVAFAEPLREPD-PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 308 ~l~v~~a~~~~~~~-~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
.|.|.++.+..... +......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 99999987653322 22333457999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCCeecCCeeEEEEEeec
Q 006370 387 INAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~~ 408 (648)
|.. ++..|.|+.|.|.++...
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHC-SCCEETTEECEEEECC--
T ss_pred HHh-CCcEECCEEEEEEecCCh
Confidence 975 899999999888876543
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.7e-27 Score=223.35 Aligned_cols=158 Identities=25% Similarity=0.448 Sum_probs=145.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
+++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..+.|+.|.|..+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999876653
Q ss_pred ------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006370 230 ------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (648)
Q Consensus 230 ------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g 303 (648)
.++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|+|||+|.+.++|.+|++.|++..+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--- 155 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR--IITSRILVDQ-VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP--- 155 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCCC---
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC--EeEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHhcCCcc---
Confidence 578999999999999999999999998 9999999884 4788999999999999999999999999977
Q ss_pred CCCc--ceeeecc
Q 006370 304 HPER--TVKVAFA 314 (648)
Q Consensus 304 ~~~~--~l~v~~a 314 (648)
.++ .|.|.||
T Consensus 156 -~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 -SGATEPITVKFA 167 (167)
T ss_dssp -TTCSSCCEEEEC
T ss_pred -CCCccceEEEeC
Confidence 343 4777764
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=6.8e-28 Score=232.57 Aligned_cols=167 Identities=25% Similarity=0.428 Sum_probs=146.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999999999999999999999999999986 8899999999886
Q ss_pred CCCC------------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHH
Q 006370 226 PSED------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (648)
Q Consensus 226 ~~~~------------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~ 293 (648)
.+.. .++|||+|||..+|+++|+++|+.||. |..|.|+.+. .++.++|||||+|.+.++|.+|+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK--IEVIEIMTDR-GSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC--eEEEEEeecC-CCCCccceEEEEECCHHHHHHHHH
Confidence 5532 478999999999999999999999999 9999999984 478999999999999999999998
Q ss_pred HhCCCCeeeCCCCcceeeeccCCCCCCC
Q 006370 294 RLQKPDVVFGHPERTVKVAFAEPLREPD 321 (648)
Q Consensus 294 ~l~~~~~~~g~~~~~l~v~~a~~~~~~~ 321 (648)
. ++..+ .++.|.|.++.++....
T Consensus 165 ~-~~~~~----~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 Q-KYHTV----NGHNCEVRKALSKQEMA 187 (196)
T ss_dssp C-SCCEE----TTEECEEEECC------
T ss_pred h-CCcEE----CCEEEEEEecCChhHhc
Confidence 6 66655 58999999998765543
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=8.8e-28 Score=227.20 Aligned_cols=162 Identities=28% Similarity=0.502 Sum_probs=144.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCC--CCcceEEEEEechhhHHHHHHhcCCCeEe---eeccC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCG 223 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg--~~kG~afV~F~~~e~A~~Al~~l~~~~l~---G~~i~ 223 (648)
+.++|||+|||+++|+++|+++|++||.|..|+|++++.++ +++|||||+|.+.++|.+||+.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999997765 34444
Q ss_pred CCCC-------CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 006370 224 TAPS-------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (648)
Q Consensus 224 v~~~-------~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~ 296 (648)
+..+ ...++|||+|||..+|+++|+++|++||. |..+.++.+. ++.++|||||+|.+.++|.+|++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC--EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 4332 24678999999999999999999999999 9999999984 68999999999999999999999999
Q ss_pred CCCeeeCCCCcceeeeccC
Q 006370 297 KPDVVFGHPERTVKVAFAE 315 (648)
Q Consensus 297 ~~~~~~g~~~~~l~v~~a~ 315 (648)
+..+..+ .++.|.|.||.
T Consensus 158 g~~~~~g-~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEG-CSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTT-CSSCCEEEECC
T ss_pred CCcccCC-CCCCeEEEecC
Confidence 9887533 25899998873
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=9.8e-28 Score=225.23 Aligned_cols=159 Identities=24% Similarity=0.479 Sum_probs=146.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
++++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+. ...|.|+.|.+..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999995 568999999887765
Q ss_pred C------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeee
Q 006370 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (648)
Q Consensus 229 ~------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~ 302 (648)
. .++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|||||+|.+.++|.+|++ +++..+
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~-- 153 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT--IIDAQLMLDK-DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF-- 153 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC--CSEEECCCSS-SSSTTSEEEEEEESSHHHHHHHHH-CSEECS--
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc--EEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHh-CCCEEe--
Confidence 3 678999999999999999999999998 9999999884 479999999999999999999998 777666
Q ss_pred CCCCcceeeeccCCC
Q 006370 303 GHPERTVKVAFAEPL 317 (648)
Q Consensus 303 g~~~~~l~v~~a~~~ 317 (648)
.++.|.|.++.++
T Consensus 154 --~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 --KDRKIEIKRAEPR 166 (167)
T ss_dssp --SSSCEEEEECCCC
T ss_pred --CCeEEEEeecCCC
Confidence 5899999999874
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-27 Score=222.99 Aligned_cols=157 Identities=25% Similarity=0.442 Sum_probs=145.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC--
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~-- 228 (648)
++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|..+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999986 47899999999999999999999999999999999886543
Q ss_pred ------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeee
Q 006370 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (648)
Q Consensus 229 ------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~ 302 (648)
...+|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|+|||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS--YLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT--EEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 3568999999999999999999999999 9999999884 4789999999999999999999999999987
Q ss_pred CCCCcceeeeccC
Q 006370 303 GHPERTVKVAFAE 315 (648)
Q Consensus 303 g~~~~~l~v~~a~ 315 (648)
.++.|.|.|+.
T Consensus 155 --~g~~i~v~~a~ 165 (166)
T 3md3_A 155 --NGRPLRINWAA 165 (166)
T ss_dssp --TTEECEEEESC
T ss_pred --CCcEEEEEecC
Confidence 58999999975
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7.1e-27 Score=220.92 Aligned_cols=168 Identities=23% Similarity=0.418 Sum_probs=147.1
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCC--CcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g--~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
+.++|||+|||.++|+++|+++|++||. |..|.|+++.. ++ +++|||||+|.+.++|.+|++.|++..+..+ ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDRS-QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG-MH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEEECS-SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT-CS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEecCC-CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC-Cc
Confidence 4579999999999999999999999999 99999999853 44 8999999999999999999999999877433 36
Q ss_pred cceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 006370 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (648)
Q Consensus 307 ~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~A 386 (648)
+.+.+.++.+..... ...++|||+|||..+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA----VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp SCCEEEECGGGCCSC----GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred cceEEcccccccccc----CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHH
Confidence 777787776544332 245799999999999999999999999999999999985 588999999999999999999
Q ss_pred HHHhCCCeecC---CeeEEEEE
Q 006370 387 INAINNKEFSD---GNSKVKLR 405 (648)
Q Consensus 387 i~~lng~~~~g---~~i~v~~~ 405 (648)
+..|||..+.+ +.|.|.++
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 99999998874 88888774
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=3.2e-27 Score=241.89 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=150.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC--
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~-- 228 (648)
++|||+|||+++|+++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|..+.
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999886553
Q ss_pred -------CCCcceecccCCCC-cHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCe
Q 006370 229 -------DNDTLFVGNICNTW-TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (648)
Q Consensus 229 -------~~~~L~V~nLp~~~-t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~ 300 (648)
..++|||+|||..+ |+++|+++|+.||. |..+.|+.+. +++++|+|||+|.+.++|.+|+..|++..+
T Consensus 176 ~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 176 QLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS--PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp GCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC--CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC--eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 35789999999995 99999999999998 9999999985 789999999999999999999999999988
Q ss_pred eeCCCCcceeeeccCCCCC
Q 006370 301 VFGHPERTVKVAFAEPLRE 319 (648)
Q Consensus 301 ~~g~~~~~l~v~~a~~~~~ 319 (648)
.++.|.|.++.+...
T Consensus 252 ----~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 252 ----GGSHLRVSFCAPGPP 266 (284)
T ss_dssp ----TTEECEEEECCSSSC
T ss_pred ----CCeEEEEEEecCCCc
Confidence 589999999987654
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=5e-27 Score=220.35 Aligned_cols=163 Identities=18% Similarity=0.379 Sum_probs=145.0
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
+.++|||+|||.++|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+|+.. ...+ .++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDP-ATGRSRGFGFLSFEKPSSVDEVVKT--QHIL----DGKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC--EEEEECCCCT-TTSSCCSCEEEEESSTHHHHHHHHS--CCEE----TTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEECC-CCCCccceEEEEEccHHHHHHHHhc--cccc----CCeE
Confidence 3579999999999999999999999998 9999999984 4789999999999999999999984 3333 4788
Q ss_pred eeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006370 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (648)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (648)
|.+.++.+.. .....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++
T Consensus 73 i~v~~~~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 73 IDPKRAIPRD-----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CCCEECCCHH-----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred cccccccchh-----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 8888776432 22346799999999999999999999999999999999998899999999999999999999998
Q ss_pred HhCCCeecCCeeEEEEEe
Q 006370 389 AINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 389 ~lng~~~~g~~i~v~~~~ 406 (648)
||+..|.|+.|.|.++.
T Consensus 148 -~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp -CSEECSSSSCEEEEECC
T ss_pred -CCCEEeCCeEEEEeecC
Confidence 99999999999988764
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=4.6e-26 Score=214.89 Aligned_cols=160 Identities=19% Similarity=0.340 Sum_probs=141.6
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhc----CCc-----ceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCC
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDY----GVE-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~----G~~-----~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~ 299 (648)
+.++|||+|||.++|+++|+++|++| |.. .|..+.+.. ++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45799999999999999999999999 510 266666543 4799999999999999999 899988
Q ss_pred eeeCCCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCC
Q 006370 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379 (648)
Q Consensus 300 ~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~ 379 (648)
+ .++.|.|.++...... ...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+
T Consensus 75 ~----~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 75 F----QGQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp E----TTEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred e----cCceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 7 5899999987654332 235799999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 380 HEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 380 ~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.++|.+|+..|||..|.|+.|.|.++
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999875
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.2e-25 Score=229.91 Aligned_cols=249 Identities=15% Similarity=0.224 Sum_probs=149.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
....++|||+|||+++|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4578999999999999999977 8999999999999975 68899999999999999999999999999999999
Q ss_pred CCCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEe----cCHH-HHHHHHHHhCC
Q 006370 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF----SCHV-DAMAAYKRLQK 297 (648)
Q Consensus 223 ~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f----~~~~-~A~~A~~~l~~ 297 (648)
.|..+............ ...+......-..... ...................+.+.= .... .+...+..+.+
T Consensus 83 ~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKG-TFVERDRKREKRKPKS--QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred EEEEeccCcchhhhhcC-Ccccchhhhhhhhccc--cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 99877554432211111 0000000000000000 000000000000000000000000 0000 00000000000
Q ss_pred CCeeeCCCC----cce-eeecc----CCC---C-----CCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEE
Q 006370 298 PDVVFGHPE----RTV-KVAFA----EPL---R-----EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (648)
Q Consensus 298 ~~~~~g~~~----~~l-~v~~a----~~~---~-----~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i 360 (648)
..-...... ..+ ...+. ... . ..........++|||+|||..+|+++|+++|++||.|..|.|
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 000000000 000 00000 000 0 000012224578999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec-CCeeEEEEEe
Q 006370 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (648)
Q Consensus 361 ~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (648)
+.++ +|||||+|.+.++|.+||..|||..|. |+.|+|.|+.
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8663 689999999999999999999999999 9999998864
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=3.4e-26 Score=221.83 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=134.6
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLD-RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp-~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999887643
Q ss_pred C-------------------------------------------CCCcceecccCCCCcHHHHHHHHhhcCCcce--EEE
Q 006370 228 E-------------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGV--ENI 262 (648)
Q Consensus 228 ~-------------------------------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i--~~i 262 (648)
. +.++|||+|||+++|+++|+++|++||. | ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~--v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV--KRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC--CCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC--cceEEE
Confidence 2 1246999999999999999999999998 7 899
Q ss_pred EEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeec
Q 006370 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313 (648)
Q Consensus 263 ~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~ 313 (648)
+++.+ .+.++|+|||+|.+.++|.+|+..||+..+.......++.|.+
T Consensus 156 ~~~~~---~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 156 KVFSG---KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp EECSC---CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EEEcC---CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 99887 3556799999999999999999999999885333344555554
No 23
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=6.9e-26 Score=213.64 Aligned_cols=153 Identities=23% Similarity=0.439 Sum_probs=139.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCe
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~----G-------~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~ 216 (648)
++.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|| .|++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 77777774 45899999999999999999 799999
Q ss_pred EeeeccCCCCCCC------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHH
Q 006370 217 ICGKRCGTAPSED------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290 (648)
Q Consensus 217 l~G~~i~v~~~~~------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~ 290 (648)
|.|+.|.|..+.. .++|||+|||..+|+++|+++|++||. |..+.++.+. .++.++|+|||+|.+.++|.+
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp ETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCSEEEEEEEEESSTTHHHH
T ss_pred ecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--ceEEEEEecC-CCCCcceEEEEEeCCHHHHHH
Confidence 9999999876654 489999999999999999999999999 9999999984 488999999999999999999
Q ss_pred HHHHhCCCCeeeCCCCcceeeecc
Q 006370 291 AYKRLQKPDVVFGHPERTVKVAFA 314 (648)
Q Consensus 291 A~~~l~~~~~~~g~~~~~l~v~~a 314 (648)
|++.|++..+ .++.|.|.+|
T Consensus 152 A~~~l~g~~~----~g~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQL----GDKKLLVQRA 171 (172)
T ss_dssp HHHHHTTCEE----TTEECEEEEC
T ss_pred HHHHcCCCEE----CCeEEEEEeC
Confidence 9999999888 5899999886
No 24
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=2.4e-26 Score=236.38 Aligned_cols=160 Identities=18% Similarity=0.369 Sum_probs=140.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
.++|||+|||+.+|+++|+++|++|| .|..|.|+.+.. +.++|||||+|.+.++|.+||..|++..|.|+.|.|..+.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 68999999999999999999999999 999999998865 7899999999999999999999999999999999886543
Q ss_pred -------------CCCcceecccCCC-CcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHH
Q 006370 229 -------------DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (648)
Q Consensus 229 -------------~~~~L~V~nLp~~-~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~ 294 (648)
..++|||+|||.. +|+++|+++|+.||. |..|.|+.+...++.++|||||+|.+.++|.+|+ .
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC--eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 3478999999999 999999999999998 9999999975334899999999999999999999 9
Q ss_pred hCCCCeeeCCCCcceeeeccCCC
Q 006370 295 LQKPDVVFGHPERTVKVAFAEPL 317 (648)
Q Consensus 295 l~~~~~~~g~~~~~l~v~~a~~~ 317 (648)
|++..+ .++.|.|.|+.++
T Consensus 273 l~g~~~----~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRSLL----GNREISVSLADKK 291 (292)
T ss_dssp GTTEEE----TTEEEEEEECCCC
T ss_pred hcCCEE----CCcEEEEEEecCC
Confidence 999887 5899999999875
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=8.9e-26 Score=218.91 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=135.6
Q ss_pred CCCcceecccC-CCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 229 DNDTLFVGNIC-NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 229 ~~~~L~V~nLp-~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
+.++|||+||+ ..+|+++|+++|++||. |.+|+|+++ ++|||||+|.+.++|.+|++.||+..+ .++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~--v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN--VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM----FGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC--EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC--eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 46799999999 89999999999999999 999999875 369999999999999999999999988 489
Q ss_pred ceeeeccCCCCCCC----------c----------------------cccccceeeeecCCCCCCCHHHHHHhhcccCcE
Q 006370 308 TVKVAFAEPLREPD----------P----------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355 (648)
Q Consensus 308 ~l~v~~a~~~~~~~----------~----------------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v 355 (648)
.|.|.++....... + ......++|||+|||+.+|+++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999885322100 0 001234579999999999999999999999999
Q ss_pred --EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 006370 356 --IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (648)
Q Consensus 356 --~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (648)
..|+|+.+. +.++|||||+|.+.++|.+||..|||..|.|..
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 899998774 456799999999999999999999999999984
No 26
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=5.8e-26 Score=229.40 Aligned_cols=162 Identities=25% Similarity=0.421 Sum_probs=150.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|.+ ++|||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34668999999999999999999999999999999954 479999999999999999999999999999999999
Q ss_pred CCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCC
Q 006370 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (648)
Q Consensus 227 ~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~ 306 (648)
+.+.++|||+|||..+|+++|+++|+.||. |..|.|+.+. +++++|||||+|.+.++|.+|+..|++..++....+
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGP--VEKAVVVVDD--RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEET--TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCC--eEEEEeeeCC--CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 999999999999999999999999999998 9999999983 899999999999999999999999987777776678
Q ss_pred cceeeeccCCCC
Q 006370 307 RTVKVAFAEPLR 318 (648)
Q Consensus 307 ~~l~v~~a~~~~ 318 (648)
++|.|.++.+..
T Consensus 169 r~i~v~~~~~~~ 180 (261)
T 3sde_A 169 RPVIVEPMEQFD 180 (261)
T ss_dssp CBCEEEECCCEE
T ss_pred ceEEEeeccccC
Confidence 999999987643
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2.4e-25 Score=215.01 Aligned_cols=167 Identities=17% Similarity=0.285 Sum_probs=142.1
Q ss_pred CCCcceecccCCCCcHHHHHHHHhhcCC----c-----ceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCC
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKDYGV----E-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~~G~----~-----~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~ 299 (648)
..++|||+|||.++|+++|+++|++||. . .|..+.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3579999999999999999999999942 0 1455544 345799999999999999999 899987
Q ss_pred eeeCCCCcceeeeccCCCCCCCc---------------cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecC
Q 006370 300 VVFGHPERTVKVAFAEPLREPDP---------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364 (648)
Q Consensus 300 ~~~g~~~~~l~v~~a~~~~~~~~---------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~ 364 (648)
+ .++.|.|.++........ ......++|||+|||..+|+++|+++|++||.|..|.|+++.
T Consensus 75 ~----~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 75 F----QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp E----TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred E----cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 7 589999999865422110 112346899999999999999999999999999999999998
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 365 ~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 151 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 151 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 8999999999999999999999999999999999988887643
No 28
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=2e-25 Score=215.54 Aligned_cols=157 Identities=22% Similarity=0.412 Sum_probs=140.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~----G-------~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
..++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 5666665 456899999999999999999 7999999
Q ss_pred eeeccCCCCCC--------------------------CCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCC
Q 006370 218 CGKRCGTAPSE--------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHE 271 (648)
Q Consensus 218 ~G~~i~v~~~~--------------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~ 271 (648)
.|+.|.|..+. ..++|||+|||..+|+++|+++|++||. |..|.++.+. .+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~~~~~~-~~ 152 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-AT 152 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC--EEEEEEEECT-TT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC--ccEEEEeecC-CC
Confidence 99999876543 3489999999999999999999999998 9999999984 48
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCC
Q 006370 272 GLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (648)
Q Consensus 272 g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~ 319 (648)
+.++|||||+|.+.++|.+|++.|++..+ .++.|.|.++.+...
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQL----GDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEE----TTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECCCCCC
Confidence 89999999999999999999999999888 589999999987543
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=7.7e-26 Score=214.11 Aligned_cols=166 Identities=15% Similarity=0.234 Sum_probs=141.9
Q ss_pred CCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeC
Q 006370 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (648)
Q Consensus 224 v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g 303 (648)
+......++|||+|||..+|+++|+++|..+|. +..+.+... .+++++|||||+|.+.++|.+|+ .|++..+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~--~~~~~~~~~--~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 78 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFA--KNDLAVVDV--RTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--- 78 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHH--HHTCCCCEE--EEETTTTEEEEEESSHHHHHHHH-HGGGEEE---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC--cceEEEEEC--CCCccccEEEEEECCHHHHHHHH-hcCCCEe---
Confidence 345567889999999999999999999999997 555333222 37889999999999999999999 5999887
Q ss_pred CCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 304 ~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
.++.|.|.++.+..... ....++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|
T Consensus 79 -~g~~l~v~~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 79 -FGNEIKLEKPKGRDSKK---VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp -TTEEEEEECCCCSSCST---TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred -CCeEEEEecCCCccccc---cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 48999999987654332 2356799999999999999999999999988766 46788999999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEEe
Q 006370 384 VACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+|+..|||..|.|+.|.|.++.
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHhCCCEECCeEEEEEecC
Confidence 99999999999999998888764
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=2.3e-26 Score=217.78 Aligned_cols=158 Identities=18% Similarity=0.338 Sum_probs=139.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|.. .++++..++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3457899999999999999999999999998766 344555678999999999999999999995 99999999999987
Q ss_pred CCCC--------CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 006370 226 PSED--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (648)
Q Consensus 226 ~~~~--------~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~ 297 (648)
.+.. .++|||+|||..+|+++|+++|++||. |..+ ..++.++|||||+|.+.++|.+|+..|++
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 7653 578999999999999999999999986 6554 23789999999999999999999999999
Q ss_pred CCeeeCCCCcceeeeccCCC
Q 006370 298 PDVVFGHPERTVKVAFAEPL 317 (648)
Q Consensus 298 ~~~~~g~~~~~l~v~~a~~~ 317 (648)
..+ .++.|.|.|+.++
T Consensus 159 ~~~----~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEI----DGRSVSLYYTGEK 174 (175)
T ss_dssp EEE----TTEEEEEEECSSC
T ss_pred CEE----CCeEEEEEecCCC
Confidence 877 5899999998764
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.5e-24 Score=214.71 Aligned_cols=164 Identities=17% Similarity=0.294 Sum_probs=143.0
Q ss_pred CCCCCCcceecccCC-CCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCC
Q 006370 226 PSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (648)
Q Consensus 226 ~~~~~~~L~V~nLp~-~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~ 304 (648)
.....++|||+|||. .+|+++|+++|++||. |..|.|+.+. +|||||+|.+.++|.+|++.|++..+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~--i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~---- 97 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---- 97 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTC--EEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC----
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCC--eEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE----
Confidence 345678999999999 9999999999999999 9999999873 68999999999999999999999888
Q ss_pred CCcceeeeccCCCCCCCc------------------------------cccccceeeeecCCCCCCCHHHHHHhhcccC-
Q 006370 305 PERTVKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG- 353 (648)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G- 353 (648)
.++.|.|.++.+.....+ ......++|||+|||..+|+++|+++|++||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 589999998875421110 0112357899999999999999999999999
Q ss_pred cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec-CCeeEEEEEe
Q 006370 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (648)
Q Consensus 354 ~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (648)
.|..|.|+.+ .+|||||+|.+.++|.+||..|||..|. |+.|+|.++.
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999999764 4789999999999999999999999999 9999998864
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=1.4e-24 Score=214.81 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=139.5
Q ss_pred cCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 147 ~~~~~tlfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
....++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45789999999999 99999999999999999999998874 7899999999999999999999999999998885
Q ss_pred CCCC-----------------------------------------CCcceecccCCCCcHHHHHHHHhhcC-CcceEEEE
Q 006370 226 PSED-----------------------------------------NDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENIN 263 (648)
Q Consensus 226 ~~~~-----------------------------------------~~~L~V~nLp~~~t~e~l~~~f~~~G-~~~i~~i~ 263 (648)
.+.. .++|||+|||..+|+++|+++|++|| . |..|.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~--i~~v~ 183 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFK 183 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC--EEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC--eeEEE
Confidence 4431 47799999999999999999999999 8 99999
Q ss_pred EeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCC
Q 006370 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317 (648)
Q Consensus 264 i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~ 317 (648)
++.+ .+|+|||+|.+.++|.+|+..|++..+. .++.|.|.|+.+.
T Consensus 184 i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK------DRKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKST 228 (229)
T ss_dssp ECSS------STTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEECSSC
T ss_pred EEEC------CCcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEEEEEecCC
Confidence 9764 3689999999999999999999998872 2799999998763
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.7e-24 Score=209.21 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=140.5
Q ss_pred CCcceecccCC-CCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcc
Q 006370 230 NDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (648)
Q Consensus 230 ~~~L~V~nLp~-~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~ 308 (648)
+++|||+|||. .+|+++|+++|++||. |..|.++.+. +|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~--i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL----HGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC--CSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC----SSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee----cCeE
Confidence 57999999999 9999999999999999 9999998863 68999999999999999999999888 5899
Q ss_pred eeeeccCCCCCCCc------------------------------cccccceeeeecCCCCCCCHHHHHHhhcccC-cEEE
Q 006370 309 VKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIR 357 (648)
Q Consensus 309 l~v~~a~~~~~~~~------------------------------~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~ 357 (648)
|.|.++.......+ ......++|||+|||..+|+++|+++|++|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 99998865421110 0112367899999999999999999999999 9999
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec-CCeeEEEEEe
Q 006370 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (648)
Q Consensus 358 v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (648)
|.|+.+ .+|+|||+|.+.++|.+|+..|||..|. |+.|+|.++.
T Consensus 151 v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 151 FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 999765 3789999999999999999999999999 9999998864
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=2.9e-24 Score=216.98 Aligned_cols=156 Identities=19% Similarity=0.333 Sum_probs=140.6
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCc
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~ 307 (648)
...++|||+|||.++|+++|+++|+.||. |..|.|.++ +|||||+|.+.++|.+|+..|++..+ .++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i----~g~ 86 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGE--PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL----KSR 86 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCC--CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE----CCc
Confidence 34578999999999999999999999999 999998653 69999999999999999999999988 589
Q ss_pred ceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 006370 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (648)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai 387 (648)
.|.|.++.+ .++|||+|||..+|+++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||
T Consensus 87 ~l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 87 PLRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp ECEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHH
T ss_pred eeEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHH
Confidence 999999874 468999999999999999999999999999999999 68999999999999999999999
Q ss_pred HHhCC-Ceec---CCeeEEEEEeec
Q 006370 388 NAINN-KEFS---DGNSKVKLRARL 408 (648)
Q Consensus 388 ~~lng-~~~~---g~~i~v~~~~~~ 408 (648)
..||+ ..+. ++.|.|.+....
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHhcCCeEEecCCCceEEEeecccc
Confidence 99955 4444 899888876544
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=1.5e-24 Score=209.59 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=137.4
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
.+++|||+|||+ ++|+++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 789999999999999999999999999999887533
Q ss_pred C-----------------------------------------CCCcceecccCCCCcHHHHHHHHhhcC-CcceEEEEEe
Q 006370 228 E-----------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLV 265 (648)
Q Consensus 228 ~-----------------------------------------~~~~L~V~nLp~~~t~e~l~~~f~~~G-~~~i~~i~i~ 265 (648)
. +.++|||+|||..+|+++|+++|++|| . |..|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~--v~~v~i~ 154 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFKFF 154 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC--CCEEEES
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC--ceEEEEE
Confidence 2 256799999999999999999999999 8 9999997
Q ss_pred ecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCC-CcceeeeccCCC
Q 006370 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPL 317 (648)
Q Consensus 266 ~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~-~~~l~v~~a~~~ 317 (648)
.+ .+|+|||+|.+.++|.+|+..|++..+ . ++.|.|.|+.+.
T Consensus 155 ~~------~~g~afV~f~~~~~A~~A~~~l~g~~~----~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK------DRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVSFSKST 197 (198)
T ss_dssp ST------TSSCEEEECSSHHHHHHHHHHHTSSCC----SSCCSCCEEEECCC
T ss_pred eC------CCcEEEEEeCCHHHHHHHHHHhcCCcc----CCCCeEEEEeeccc
Confidence 74 268999999999999999999999888 4 789999998763
No 36
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=8.4e-20 Score=169.55 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=111.0
Q ss_pred EEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeC---CCCcceeeeccC-CCCCCCccccccceeeeecCC
Q 006370 261 NINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAE-PLREPDPEIMAHVKTVFLDGV 336 (648)
Q Consensus 261 ~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g---~~~~~l~v~~a~-~~~~~~~~~~~~~~~l~v~nL 336 (648)
.++|+.+ ..+++||+||+|.+.++|++|++.+++.....+ ............ .............++|||+||
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 3556665 346899999999999999999988764321100 001111111111 111112222345689999999
Q ss_pred CCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 337 PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 337 p~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
|+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++...
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999989999999999999999999999999999999999999987543
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=4.9e-19 Score=154.96 Aligned_cols=96 Identities=23% Similarity=0.420 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
...+|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 4589999999999999999999999999999999886543
Q ss_pred C--------------CCcceecccCCCCcHHH
Q 006370 229 D--------------NDTLFVGNICNTWTKEA 246 (648)
Q Consensus 229 ~--------------~~~L~V~nLp~~~t~e~ 246 (648)
. .++|||+|||.++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 2 35799999999999874
No 38
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=7.5e-19 Score=189.00 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=77.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.||+++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 3
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=5.5e-18 Score=155.78 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCCCeeeCCCCcceeeeccCCCC-----------CCCccccccceeeeecCCCC
Q 006370 271 EGLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLR-----------EPDPEIMAHVKTVFLDGVPP 338 (648)
Q Consensus 271 ~g~srG~afV~f~~~~~A~~A~~~l-~~~~~~~g~~~~~l~v~~a~~~~-----------~~~~~~~~~~~~l~v~nLp~ 338 (648)
....+|+++|+|.+.++|++|++.+ |+..+ .+ .+.+.++.... ..........++|||+|||+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~----~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGV----DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTC----CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCC----CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 3467899999999999999999999 88877 46 88888875421 11222334568999999999
Q ss_pred CCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 339 ~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+||..|||..|.|+.|+|.++.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 9999999999999999999999876 68999999999999999999999999999999998864
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=143.06 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||.++|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999876
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=144.74 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
-..++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 42
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=1.3e-17 Score=154.64 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=108.6
Q ss_pred EEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCC-------eEeeecc------------CCCCCCCCCcceecccC
Q 006370 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-------VICGKRC------------GTAPSEDNDTLFVGNIC 239 (648)
Q Consensus 179 ~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~-------~l~G~~i------------~v~~~~~~~~L~V~nLp 239 (648)
++.|+.+.. +++|||||+|.+.++|++||+.+++. .+.+... ........++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777643 68999999999999999999876531 1111111 11122346899999999
Q ss_pred CCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCC
Q 006370 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (648)
Q Consensus 240 ~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~ 319 (648)
..+|+++|+++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+...
T Consensus 80 ~~~~~~~l~~~F~~~G~--v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR--VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSC--EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTEES----SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCC--eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECCCCCC
Confidence 99999999999999998 9999999984 4899999999999999999999999999877 589999999987654
Q ss_pred C
Q 006370 320 P 320 (648)
Q Consensus 320 ~ 320 (648)
.
T Consensus 153 ~ 153 (158)
T 2kn4_A 153 P 153 (158)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.2e-17 Score=152.86 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=77.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ee
Q 006370 406 AR 407 (648)
Q Consensus 406 ~~ 407 (648)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 44
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=7.4e-18 Score=165.77 Aligned_cols=81 Identities=10% Similarity=0.297 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccC--cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
..++|||+||++.+|+++|+++|++|| .|+.|.|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 346899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=3.9e-17 Score=142.83 Aligned_cols=106 Identities=20% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcce
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l 309 (648)
.++|||+|||..+|+++|+++|++||. |..|+|+.+ .+.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d---~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~----~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC--EEEEEEeec---CCCCCceEEEEECCHHHHHHHHHHcCCCEE----CCEEE
Confidence 468999999999999999999999999 999999998 456899999999999999999999999988 58999
Q ss_pred eeeccCCCCCCCcc---ccccceeeeecCCCCCCCHHH
Q 006370 310 KVAFAEPLREPDPE---IMAHVKTVFLDGVPPHWKENQ 344 (648)
Q Consensus 310 ~v~~a~~~~~~~~~---~~~~~~~l~v~nLp~~~t~~~ 344 (648)
.|.++.+....... .....++|||+|||+.+|++-
T Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 76 FVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEESSCCCC----------------------------
T ss_pred EEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 99999876543322 223346799999999998763
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=140.35 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=76.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+||++.+|+++|+++|++||.|..|.|+++..|++++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998863
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=140.49 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
.+.++|||+|||+++|+++|+++|++||.|..|.|++++.|++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred C
Q 006370 228 E 228 (648)
Q Consensus 228 ~ 228 (648)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=139.52 Aligned_cols=82 Identities=27% Similarity=0.448 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC-CCeEeeeccCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK-NPVICGKRCGTAPS 227 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~-~~~l~G~~i~v~~~ 227 (648)
+++|||+|||+++|+++|+++|++|| .|++|+|++++.|+.++|||||+|.+.++|.+||+.++ +..|.|++|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999999875 55799999999887
Q ss_pred CCCC
Q 006370 228 EDND 231 (648)
Q Consensus 228 ~~~~ 231 (648)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 49
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=2.6e-17 Score=148.13 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=80.1
Q ss_pred EEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCccccccceeeeecCCCCCCCHHHHHHhhcccCcEE
Q 006370 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356 (648)
Q Consensus 277 ~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~ 356 (648)
++|++|.+...+..|+..+++.... ++ ..+.+..+ +......++|||+|||+.+|+++|+++|++||.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~----g~-~~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM----GR-GSMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC----CC-CCCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 5678888888888888888876542 11 12222222 22233467999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 357 ~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++..
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999988999999999999999999999999999999999999988754
No 50
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=138.14 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..||+ .|.|+.|+|.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 468999999999999999999999999999999999999999999999999999999999999998 8999999888865
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 95 ~~ 96 (116)
T 2cqd_A 95 LG 96 (116)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 51
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.4e-16 Score=148.87 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=79.0
Q ss_pred EEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCC---------------CCCCccccccceeeeecCCCCCCCHHH
Q 006370 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL---------------REPDPEIMAHVKTVFLDGVPPHWKENQ 344 (648)
Q Consensus 280 V~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~---------------~~~~~~~~~~~~~l~v~nLp~~~t~~~ 344 (648)
.+|.+.++|..|+..|++.... ..++.+.+.++... ....+......++|||+|||+.+|+++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~--~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH--RKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhcccccc--ccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788888888888888775442 12333333322110 111222334467899999999999999
Q ss_pred HHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 345 l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++...
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999887654
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.6e-16 Score=141.39 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=78.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 654
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=137.63 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=72.6
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccC-cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCeecCCeeEEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN-NKEFSDGNSKVKLR 405 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln-g~~~~g~~i~v~~~ 405 (648)
+++|||+|||..+|+++|+++|++|| .|..|.|++++.++.++|||||+|.+.++|.+||+.|+ +..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999888765
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=137.02 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=74.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCc--EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----eecCCee
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGNS 400 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~----~~~g~~i 400 (648)
..++|||+|||+.+|+++|+++|++||. |..|+|++|+.+++++|||||+|.+.++|.+||+.||+. .|.|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 678999999999999999999999999999999999997 5999999
Q ss_pred EEEEEe
Q 006370 401 KVKLRA 406 (648)
Q Consensus 401 ~v~~~~ 406 (648)
.|.++.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998864
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-17 Score=137.84 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=75.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCC----eEeee
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGK 220 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~--v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~----~l~G~ 220 (648)
...-.||||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|.+||+.||+. .|.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 346689999999999999999999999995 679999999999999999999999999999999999986 58899
Q ss_pred ccCCCCCCC
Q 006370 221 RCGTAPSED 229 (648)
Q Consensus 221 ~i~v~~~~~ 229 (648)
+|.|..+++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 998887754
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=8.1e-16 Score=134.45 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=77.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999988865
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 94 ~~ 95 (115)
T 2dgo_A 94 RK 95 (115)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=132.42 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=77.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999998888765
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 87 ~~ 88 (99)
T 1whw_A 87 IK 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 58
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=131.09 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=76.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998763
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=4.1e-16 Score=127.75 Aligned_cols=79 Identities=14% Similarity=0.411 Sum_probs=75.5
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.+|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999887643
No 60
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=7.9e-17 Score=140.91 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=94.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+||..||+..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999876 566999999999999999999999999999999999887
Q ss_pred CCCCcceecccCCCCcHHHHHHHHhhcCC
Q 006370 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGV 256 (648)
Q Consensus 228 ~~~~~L~V~nLp~~~t~e~l~~~f~~~G~ 256 (648)
...... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 653333 778888999999999999994
No 61
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=133.17 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=76.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999998888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 94 ~ 94 (103)
T 2cq0_A 94 P 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=128.68 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999998874
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=6.3e-17 Score=134.87 Aligned_cols=80 Identities=11% Similarity=0.331 Sum_probs=71.9
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccC--cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999998887765
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=134.68 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=77.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 92 ~ 92 (103)
T 2dnm_A 92 Y 92 (103)
T ss_dssp S
T ss_pred c
Confidence 4
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=130.98 Aligned_cols=80 Identities=20% Similarity=0.476 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+ ||+..|.|+.|+|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999998 99999999999998764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 88 ~ 88 (99)
T 2dgs_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=135.37 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=75.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35799999999999999999999999999999999997 89999999999999999999999999999999999998865
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 85 ~ 85 (116)
T 2fy1_A 85 K 85 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=133.07 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=77.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 91 ~~ 92 (102)
T 1x5s_A 91 KS 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 68
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-16 Score=132.46 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=78.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 653
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=5.2e-16 Score=135.69 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=76.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999998888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 104 ~ 104 (115)
T 2cpz_A 104 S 104 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4.2e-16 Score=128.29 Aligned_cols=79 Identities=20% Similarity=0.456 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4579999999999999999999999999999999999889999999999999999999999999999999999999875
No 71
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=2e-16 Score=133.61 Aligned_cols=87 Identities=23% Similarity=0.410 Sum_probs=81.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
++++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCccee
Q 006370 229 DNDTLFV 235 (648)
Q Consensus 229 ~~~~L~V 235 (648)
....+..
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 7665543
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=130.95 Aligned_cols=80 Identities=18% Similarity=0.370 Sum_probs=75.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 5689999999999999999999999999999999988 78999999999999999999999999999999999998875
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 73
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=138.69 Aligned_cols=80 Identities=23% Similarity=0.432 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998888764
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=3.9e-16 Score=127.84 Aligned_cols=81 Identities=20% Similarity=0.427 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
+.+|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|..+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred C
Q 006370 230 N 230 (648)
Q Consensus 230 ~ 230 (648)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=2.1e-16 Score=134.50 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=75.7
Q ss_pred ceeeeecCCCC------CCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC-Cee
Q 006370 328 VKTVFLDGVPP------HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 400 (648)
Q Consensus 328 ~~~l~v~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g-~~i 400 (648)
.++|||+|||+ .+++++|+++|++||.|..|.|++++.|++++|||||+|.+.++|.+||..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEe
Q 006370 401 KVKLRA 406 (648)
Q Consensus 401 ~v~~~~ 406 (648)
.|.++.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 998764
No 76
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-16 Score=131.66 Aligned_cols=81 Identities=11% Similarity=0.297 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~---~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 357999999999999999999999999999999998876 66899999999999999999999999999999998888
Q ss_pred EEee
Q 006370 404 LRAR 407 (648)
Q Consensus 404 ~~~~ 407 (648)
++..
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 7644
No 77
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=9.4e-17 Score=133.83 Aligned_cols=79 Identities=22% Similarity=0.466 Sum_probs=72.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
.+|||+|||+++|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999998776
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-16 Score=132.72 Aligned_cols=81 Identities=20% Similarity=0.439 Sum_probs=76.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 91 ~ 91 (102)
T 2cqb_A 91 P 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=132.24 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999888764
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=129.25 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=76.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999888865
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=132.89 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=76.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCeecCCe
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN------NKEFSDGN 399 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln------g~~~~g~~ 399 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346799999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEEEEEee
Q 006370 400 SKVKLRAR 407 (648)
Q Consensus 400 i~v~~~~~ 407 (648)
|+|.++..
T Consensus 93 l~v~~a~~ 100 (111)
T 1x4h_A 93 LKVDLAVT 100 (111)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 88887643
No 82
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=1.9e-16 Score=155.71 Aligned_cols=79 Identities=22% Similarity=0.462 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
..++|||+||++++|+++|+++|++|| .|+.|+|++++.|++++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999886655
Q ss_pred C
Q 006370 227 S 227 (648)
Q Consensus 227 ~ 227 (648)
+
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=131.17 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=77.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeecCCeeEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVK 403 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d-~~~~~~~G~afV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~ 403 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+++ ..++.++|||||+|.+.++|.+||..| |+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34689999999999999999999999999999999999 789999999999999999999999999 9999999999998
Q ss_pred EEee
Q 006370 404 LRAR 407 (648)
Q Consensus 404 ~~~~ 407 (648)
++..
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8654
No 84
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=129.42 Aligned_cols=81 Identities=27% Similarity=0.508 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999999899999999999999999999999999999999999887664
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 85
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=3.5e-16 Score=128.76 Aligned_cols=80 Identities=20% Similarity=0.525 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999987654
No 86
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=130.84 Aligned_cols=82 Identities=27% Similarity=0.542 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||.++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 87
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=128.71 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999875
No 88
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=134.24 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=79.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 77543
No 89
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.4e-15 Score=130.14 Aligned_cols=78 Identities=15% Similarity=0.299 Sum_probs=74.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++|| |..|.|+++..+++++|||||+|.+.++|.+|| .||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 468999999999999999999999997 999999999999999999999999999999999 899999999999988764
No 90
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=131.23 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=75.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||..+|+++|+++|++||.|..| .|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35799999999999999999999999999999 99999889999999999999999999999999999999999988876
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 84 ~ 84 (96)
T 1x5t_A 84 F 84 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=3.1e-16 Score=144.00 Aligned_cols=117 Identities=20% Similarity=0.296 Sum_probs=103.4
Q ss_pred CCCcceEEEEEechhhHHHHHHhc-CCCeEeeeccCCCCC----------------------CCCCcceecccCCCCcHH
Q 006370 189 NRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTAPS----------------------EDNDTLFVGNICNTWTKE 245 (648)
Q Consensus 189 g~~kG~afV~F~~~e~A~~Al~~l-~~~~l~G~~i~v~~~----------------------~~~~~L~V~nLp~~~t~e 245 (648)
...+|+++|+|.+.++|++||+.+ |+..|.| .|.+..+ ...++|||+|||+.+|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 8887777 6655332 235899999999999999
Q ss_pred HHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCC
Q 006370 246 AIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (648)
Q Consensus 246 ~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~ 318 (648)
+|+++|++||. |..|.|+.+ ++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+..
T Consensus 89 ~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP--LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL----CGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC--EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS----SSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC--EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEcCCCC
Confidence 99999999998 999999876 579999999999999999999999887 58999999987753
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=9.5e-16 Score=130.14 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=76.1
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
...++|||+|||..+|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+||+.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34689999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CeeEEEEE
Q 006370 398 GNSKVKLR 405 (648)
Q Consensus 398 ~~i~v~~~ 405 (648)
+.|+|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999875
No 93
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=134.19 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=78.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 006370 226 PSED 229 (648)
Q Consensus 226 ~~~~ 229 (648)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2dnm_A 89 VARY 92 (103)
T ss_dssp ECSS
T ss_pred ECCc
Confidence 7754
No 94
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=128.89 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=74.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45799999999999999999999999999999999997 89999999999999999999999999999999998888764
No 95
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=8.9e-16 Score=129.52 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=76.2
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999988654
No 96
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.8e-15 Score=129.87 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC---CeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD---GNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g---~~i~v~ 403 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.+ +.|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999997 79999999999999999999999999999998 998888
Q ss_pred EEee
Q 006370 404 LRAR 407 (648)
Q Consensus 404 ~~~~ 407 (648)
++..
T Consensus 93 ~a~~ 96 (105)
T 2dnh_A 93 FADT 96 (105)
T ss_dssp ESCS
T ss_pred ECcc
Confidence 7654
No 97
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=132.32 Aligned_cols=84 Identities=29% Similarity=0.458 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999998877
Q ss_pred CCCC
Q 006370 228 EDND 231 (648)
Q Consensus 228 ~~~~ 231 (648)
....
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6543
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=133.51 Aligned_cols=85 Identities=24% Similarity=0.467 Sum_probs=79.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999999899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 77654
No 99
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=1.6e-15 Score=131.36 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=77.7
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ee
Q 006370 406 AR 407 (648)
Q Consensus 406 ~~ 407 (648)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=131.55 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=77.2
Q ss_pred cccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
....++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 103 a~ 104 (108)
T 2jrs_A 103 VT 104 (108)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 101
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=6.9e-16 Score=134.88 Aligned_cols=85 Identities=28% Similarity=0.537 Sum_probs=79.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77543
No 102
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=130.32 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45799999999999999999999999999999999986 58999999999999999999999999999999999998864
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 103
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=4.7e-16 Score=145.19 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=77.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 006370 226 PSE 228 (648)
Q Consensus 226 ~~~ 228 (648)
.+.
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 664
No 104
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7e-16 Score=130.98 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=77.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999999998 999999999999877
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 105
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.1e-16 Score=130.68 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=77.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 006370 227 SE 228 (648)
Q Consensus 227 ~~ 228 (648)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 106
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=131.10 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCC---CCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~---tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|.+||+.|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3678999999999999999999999999999999999877 6799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 006370 225 APSEDN 230 (648)
Q Consensus 225 ~~~~~~ 230 (648)
..+...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 877653
No 107
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=1.5e-16 Score=135.31 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee-ec
Q 006370 149 KEHEIFIGGLDR------DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-KR 221 (648)
Q Consensus 149 ~~~tlfV~nLp~------~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G-~~ 221 (648)
..++|||+|||+ ++++++|+++|++||.|..|+|++++.|++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 98
Q ss_pred cCCCCCC
Q 006370 222 CGTAPSE 228 (648)
Q Consensus 222 i~v~~~~ 228 (648)
|.|..+.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 8876654
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=6.6e-16 Score=124.82 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
.+..|||+||++.+|+++|+++|.+||+|.+|+|+. ++|||||+|.+.++|.+|++.||+..|.|++|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 567999999999999999999999999999999964 6999999999999999999999999999999987655
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=131.06 Aligned_cols=80 Identities=16% Similarity=0.367 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+++.. +.++|||||+|.+.++|.+||. +|+..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 357999999999999999999999999999999999977 9999999999999999999998 99999999999999866
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 110
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=6.1e-16 Score=135.21 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46689999999999999999999999999999999999989999999999999999999999999999999999999877
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
...
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=130.81 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=74.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcc-cCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe-ecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE-FSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~-~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+.. |.|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4579999999999999999999999 9999999999998 89999999999999999999999999999 9999988876
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 112
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.3e-16 Score=130.89 Aligned_cols=81 Identities=23% Similarity=0.491 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..++|||+|||+++|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 67899999999999999999999999999999 99999899999999999999999999999999999999999998777
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 113
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.5e-15 Score=130.59 Aligned_cols=81 Identities=15% Similarity=0.361 Sum_probs=76.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee---cCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF---SDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~---~g~~i~v~ 403 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..+ .++.|.|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999999998 88998888
Q ss_pred EEee
Q 006370 404 LRAR 407 (648)
Q Consensus 404 ~~~~ 407 (648)
++..
T Consensus 92 ~a~~ 95 (106)
T 2dgp_A 92 PADS 95 (106)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7643
No 114
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.1e-15 Score=127.04 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..+..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999989999999999999999999999 8999999999999887754
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.7e-16 Score=127.54 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|++..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 006370 228 E 228 (648)
Q Consensus 228 ~ 228 (648)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.1e-15 Score=130.00 Aligned_cols=80 Identities=8% Similarity=0.175 Sum_probs=75.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999886
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=129.84 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=76.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 006370 227 S 227 (648)
Q Consensus 227 ~ 227 (648)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=127.04 Aligned_cols=81 Identities=14% Similarity=0.321 Sum_probs=74.0
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999998854 38999999999999999999999999999999998886
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 543
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=127.71 Aligned_cols=78 Identities=10% Similarity=0.190 Sum_probs=72.5
Q ss_pred cceeeeecCCCCCCCHHHHH----HhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+||..|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999 99999999999999988765 889999999999999999999999999999998
Q ss_pred EEEee
Q 006370 403 KLRAR 407 (648)
Q Consensus 403 ~~~~~ 407 (648)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 87643
No 120
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=130.77 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=77.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCe-EeeeccCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGKRCGT 224 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~-~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~-l~G~~i~v 224 (648)
....++|||+|||+++|+++|+++|++ ||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.|++.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456799999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+..
T Consensus 85 ~~a~~ 89 (104)
T 2dhg_A 85 SVAIP 89 (104)
T ss_dssp CBCCC
T ss_pred EEccC
Confidence 88754
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=128.80 Aligned_cols=78 Identities=19% Similarity=0.444 Sum_probs=73.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~-~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+.+|+++|+++|++|| |..|.|+++..+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 458999999999999999999999999 999999999887 999999999999999999999 99999999999888876
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 92 ~ 92 (104)
T 1wi8_A 92 D 92 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=129.73 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec----c
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVI-EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR----C 222 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~-~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~----i 222 (648)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.++.++|||||+|.+.++|.+||+.||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 9999999999999999999999999999999999999999999 8
Q ss_pred CCCCCCC
Q 006370 223 GTAPSED 229 (648)
Q Consensus 223 ~v~~~~~ 229 (648)
.|..+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 7776654
No 123
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.9e-16 Score=133.55 Aligned_cols=85 Identities=22% Similarity=0.394 Sum_probs=79.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC------CCeEee
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK------NPVICG 219 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~------~~~l~G 219 (648)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34468899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eccCCCCCCCC
Q 006370 220 KRCGTAPSEDN 230 (648)
Q Consensus 220 ~~i~v~~~~~~ 230 (648)
+.|.|..+...
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99998877543
No 124
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=8.5e-16 Score=132.58 Aligned_cols=85 Identities=25% Similarity=0.495 Sum_probs=79.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 77643
No 125
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=131.83 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||+|..|.|++++. +.++|||||+|.+.++|.+||. +++..|.|+.|.|..+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999977 9999999999999999999999 8999999998877543
No 126
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=1.1e-15 Score=126.37 Aligned_cols=80 Identities=23% Similarity=0.543 Sum_probs=73.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999997 57788999988775
Q ss_pred C
Q 006370 226 P 226 (648)
Q Consensus 226 ~ 226 (648)
.
T Consensus 86 ~ 86 (87)
T 3s7r_A 86 K 86 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 127
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.6e-16 Score=130.66 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=76.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999997 899999999999999999999999999999999998877
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+.+
T Consensus 93 a~~ 95 (100)
T 2do4_A 93 SNS 95 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 128
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=125.36 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=74.6
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK-RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~-~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 47899999999999999999999999999999999887766 89999999999999999999999999999999998874
No 129
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=3.9e-15 Score=127.35 Aligned_cols=75 Identities=24% Similarity=0.461 Sum_probs=68.6
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 356899999999999999999999999999999996 459999999999999999999999999999888887
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-16 Score=132.89 Aligned_cols=83 Identities=29% Similarity=0.571 Sum_probs=77.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 643
No 131
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=132.34 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=75.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
..++|||+|||+.+|+++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|.+||..||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 468999999999999999999999999999 699999989999999999999999999999999999999999
Q ss_pred eeEEEEEe
Q 006370 399 NSKVKLRA 406 (648)
Q Consensus 399 ~i~v~~~~ 406 (648)
.|+|.++.
T Consensus 94 ~l~V~~a~ 101 (113)
T 2cpe_A 94 KLKVSLAR 101 (113)
T ss_dssp ECEEECSS
T ss_pred EEEEEECC
Confidence 98887653
No 132
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=128.13 Aligned_cols=81 Identities=19% Similarity=0.383 Sum_probs=75.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44678999999999999999999999999999999999975 89999999999999999999999999999999998877
Q ss_pred CC
Q 006370 227 SE 228 (648)
Q Consensus 227 ~~ 228 (648)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 133
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.9e-16 Score=132.29 Aligned_cols=87 Identities=28% Similarity=0.496 Sum_probs=80.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEec-CCCCCCcceEEEEEechhhHHHHHHhc-CCCeEeeeccC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCG 223 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d-~~tg~~kG~afV~F~~~e~A~~Al~~l-~~~~l~G~~i~ 223 (648)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|.+||..| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3447799999999999999999999999999999999999 789999999999999999999999999 99999999999
Q ss_pred CCCCCCCCc
Q 006370 224 TAPSEDNDT 232 (648)
Q Consensus 224 v~~~~~~~~ 232 (648)
|..+.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 887765443
No 134
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=127.01 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=73.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+.+++++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 457999999999999999999999999999999999975 899999999999999999999999999999999988865
No 135
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=132.22 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=77.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 006370 226 PSE 228 (648)
Q Consensus 226 ~~~ 228 (648)
.+.
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 664
No 136
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=129.39 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=74.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEE-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe----eE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN----SK 401 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~----i~ 401 (648)
..++|||+|||..+|+++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|.+||..||+..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 9999999999999999999999999999999999999999999 55
Q ss_pred EEEE
Q 006370 402 VKLR 405 (648)
Q Consensus 402 v~~~ 405 (648)
|.++
T Consensus 88 v~~a 91 (99)
T 2div_A 88 LNYA 91 (99)
T ss_dssp EEET
T ss_pred Eeec
Confidence 5553
No 137
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-16 Score=132.88 Aligned_cols=83 Identities=19% Similarity=0.505 Sum_probs=78.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 138
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2e-15 Score=132.56 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=76.2
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999875
No 139
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=133.09 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=77.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344679999999999999999999999999999999999999999999999999999999999999998 8999999987
Q ss_pred CCCC
Q 006370 226 PSED 229 (648)
Q Consensus 226 ~~~~ 229 (648)
.+..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 7643
No 140
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=130.06 Aligned_cols=83 Identities=29% Similarity=0.569 Sum_probs=78.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7653
No 141
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=1.4e-15 Score=140.54 Aligned_cols=85 Identities=16% Similarity=0.346 Sum_probs=79.4
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
......++|||+|||+++|+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+..
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 87754
No 142
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=7.3e-16 Score=132.59 Aligned_cols=85 Identities=24% Similarity=0.475 Sum_probs=78.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE---eeecc
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI---CGKRC 222 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l---~G~~i 222 (648)
.....++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344678999999999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred CCCCCCCC
Q 006370 223 GTAPSEDN 230 (648)
Q Consensus 223 ~v~~~~~~ 230 (648)
.|..+...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 88777543
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.2e-15 Score=134.09 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=76.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred C
Q 006370 227 S 227 (648)
Q Consensus 227 ~ 227 (648)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 144
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.5e-15 Score=126.39 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=72.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+++..+ ++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 4579999999999999999999999999999999998543 68999999999999999999999999999998888765
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=1.1e-15 Score=136.23 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=79.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 87653
No 146
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=2.7e-15 Score=124.02 Aligned_cols=77 Identities=14% Similarity=0.341 Sum_probs=72.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+ +++..|.|+.|.|.+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45799999999999999999999999999999999999999999999999999999999995 688999999988875
No 147
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=138.91 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccC--cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
..++|||+|||+++|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 999999999999999999999999999999999999999999999999988
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 148
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=127.30 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=70.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC--CCeEeeeccCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGT 224 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~G~~i~v 224 (648)
....++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+||+.|+ +..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346799999999999999999999999999999999864 7999999999999999999876 47899999999
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 88764
No 149
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.7e-15 Score=122.43 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
+..|+|+||++.+|+++|+++|.+||+|..+.|.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46899999999999999999999999999999965 6999999999999999999999999999999999876
No 150
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=133.09 Aligned_cols=81 Identities=31% Similarity=0.585 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999988766
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 151
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=133.05 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=79.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~--------~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
.....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344789999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCC
Q 006370 218 CGKRCGTAPSEDN 230 (648)
Q Consensus 218 ~G~~i~v~~~~~~ 230 (648)
.|+.|.|..+...
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999877653
No 152
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=3.3e-15 Score=124.91 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=73.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999999874 78899999999999999999999999999999998888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=129.69 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=75.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34678999999999999999999999997 999999999999999999999999999999999 8999999999999877
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 90 a~~ 92 (103)
T 2dng_A 90 AEG 92 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 654
No 154
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=139.95 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G--~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||..||+..|.|+.|.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 006370 227 SE 228 (648)
Q Consensus 227 ~~ 228 (648)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 155
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=129.33 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=76.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~--------v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
.....++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+||+.|++..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eeeccCCCCC
Q 006370 218 CGKRCGTAPS 227 (648)
Q Consensus 218 ~G~~i~v~~~ 227 (648)
.|+.|.|..+
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999887654
No 156
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.4e-15 Score=134.03 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=76.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 125 ~ 125 (129)
T 2kxn_B 125 T 125 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 157
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=129.70 Aligned_cols=79 Identities=16% Similarity=0.392 Sum_probs=73.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 457999999999999999999999999999999999999999999999999999999999998 9999999987776543
No 158
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=2.4e-15 Score=124.88 Aligned_cols=77 Identities=18% Similarity=0.393 Sum_probs=73.9
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 479999999999999999999999999999999999889999999999999999999999 99999999999988875
No 159
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=1.9e-15 Score=129.80 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee---eccCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG---KRCGT 224 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G---~~i~v 224 (648)
...++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.||+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467999999999999999999999999999999999997 79999999999999999999999999999998 88888
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 76654
No 160
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=128.66 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=75.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45799999999999999999999999999988888888899999999999999999999999999999999999998754
No 161
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=6.5e-16 Score=131.67 Aligned_cols=84 Identities=27% Similarity=0.551 Sum_probs=76.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC-
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~- 229 (648)
++|||+|||.++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+||+.|++..|.|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 789999999999999999999999999999998865532
Q ss_pred ---------------CCcceecccC
Q 006370 230 ---------------NDTLFVGNIC 239 (648)
Q Consensus 230 ---------------~~~L~V~nLp 239 (648)
..+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 5689999986
No 162
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=128.76 Aligned_cols=83 Identities=16% Similarity=0.308 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCc-EEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCeecCCeeEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 402 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v 402 (648)
..++|||+|||+.+|+++|+++|++||. |..|.|+ .+..++.++|||||+|.+.++|.+||..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3579999999999999999999999998 9999998 788889999999999999999999999996 58999999999
Q ss_pred EEEeecC
Q 006370 403 KLRARLS 409 (648)
Q Consensus 403 ~~~~~~~ 409 (648)
.++....
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 8876543
No 163
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=130.73 Aligned_cols=80 Identities=29% Similarity=0.530 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999988764
No 164
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=1.9e-15 Score=130.24 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=76.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34578999999999999999999999999999999999998 89999999999999999999999999999999999876
Q ss_pred CC
Q 006370 226 PS 227 (648)
Q Consensus 226 ~~ 227 (648)
.+
T Consensus 104 ~a 105 (107)
T 3ulh_A 104 LV 105 (107)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=9.2e-16 Score=123.03 Aligned_cols=74 Identities=16% Similarity=0.381 Sum_probs=70.8
Q ss_pred eeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
+|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 58999999999999999999999999999999998899999999999999999999997 999999999988875
No 166
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=129.66 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC-CCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
...++|||+|||+++|+++|+++|++|| |..|.|++++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999999888 999999999999999999999 8999999999998877
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 167
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1.1e-15 Score=128.71 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=74.3
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999999999999888764
No 168
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=1.5e-15 Score=131.61 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=77.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 006370 226 PSE 228 (648)
Q Consensus 226 ~~~ 228 (648)
.+.
T Consensus 102 ~a~ 104 (110)
T 1oo0_B 102 WCF 104 (110)
T ss_dssp ESE
T ss_pred Ecc
Confidence 664
No 169
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=130.14 Aligned_cols=81 Identities=26% Similarity=0.457 Sum_probs=75.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346799999999999999999999999999999999998 899999999999999999999999999999999999877
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 654
No 170
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=125.99 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC-CcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~-~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..++|||+|||.++|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 9999999999999999999999999999999988765
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 171
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=123.21 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee-cc
Q 006370 150 EHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-RC 222 (648)
Q Consensus 150 ~~tlfV~nLp~~~------te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~-~i 222 (648)
+++|||+|||+.+ |+++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+||+.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46899999999999999999999999999999999 88
Q ss_pred CC
Q 006370 223 GT 224 (648)
Q Consensus 223 ~v 224 (648)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 172
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=130.82 Aligned_cols=81 Identities=17% Similarity=0.370 Sum_probs=75.1
Q ss_pred cccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999987 99999999988876
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 103 a~ 104 (116)
T 1x4b_A 103 AV 104 (116)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 173
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=4.4e-16 Score=140.02 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=70.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+++|+++|+++|++|| |+.|.|++++. ++++|||||+|.+.++|++|| .||+..|.++.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 67999999975 999999999999999999999 79999999999888764
No 174
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=8.1e-16 Score=123.34 Aligned_cols=74 Identities=31% Similarity=0.535 Sum_probs=70.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 152 tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
+|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ |++..|.|+.|.|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 59999999999999999999999999999999999899999999999999999999998 999999999987754
No 175
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.1e-15 Score=126.49 Aligned_cols=73 Identities=22% Similarity=0.441 Sum_probs=67.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC-----CeeE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-----GNSK 401 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g-----~~i~ 401 (648)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4579999999999999999999999999999999876 899999999999999999999999999 8877
Q ss_pred EEEEe
Q 006370 402 VKLRA 406 (648)
Q Consensus 402 v~~~~ 406 (648)
|.++.
T Consensus 87 V~~a~ 91 (108)
T 1x4c_A 87 VKVDG 91 (108)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77654
No 176
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=5.6e-15 Score=130.94 Aligned_cols=86 Identities=7% Similarity=0.140 Sum_probs=79.3
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999988
Q ss_pred eecCCCC
Q 006370 406 ARLSNPM 412 (648)
Q Consensus 406 ~~~~~~~ 412 (648)
.......
T Consensus 112 ~~~~~~~ 118 (124)
T 2kt5_A 112 ASQIDLE 118 (124)
T ss_dssp CCTTCCC
T ss_pred CCCCCCC
Confidence 6654433
No 177
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=130.98 Aligned_cols=80 Identities=13% Similarity=0.253 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999999999999999999999999999 999999999999998864
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 178
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=136.28 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=75.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----eecCCe
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGN 399 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~----~~~g~~ 399 (648)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+||..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34679999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eEEEEEee
Q 006370 400 SKVKLRAR 407 (648)
Q Consensus 400 i~v~~~~~ 407 (648)
|.|.++..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99987643
No 179
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=4e-15 Score=124.39 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999974 7899999999999999999999999999999999999877
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 180
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=127.11 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=70.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.| .|.|++++ +++++|||||+|.+.++|++||+ +|+..|.++.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999954 99999997 89999999999999999999994 89999999998887653
No 181
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=127.06 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=67.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng--~~~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+||..|++ ..|.|+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3579999999999999999999999999999999875 79999999999999999998864 789999988877
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 182
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9e-15 Score=126.43 Aligned_cols=77 Identities=16% Similarity=0.360 Sum_probs=70.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4579999999999999999999999999999999654 5589999999999999999999999999999998887753
No 183
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=125.74 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=68.5
Q ss_pred cceeeeecCCCC-CCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--eecCCeeEEE
Q 006370 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~--~~~g~~i~v~ 403 (648)
..++|||+|||+ .+|+++|+++|++||.|+.|.|+++ +|||||+|++.++|.+||..||+. .|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467999999999 9999999999999999999999865 589999999999999999999864 5999999999
Q ss_pred EEee
Q 006370 404 LRAR 407 (648)
Q Consensus 404 ~~~~ 407 (648)
++..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8754
No 184
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.6e-16 Score=123.82 Aligned_cols=76 Identities=29% Similarity=0.525 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
++|||+|||.++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999998877543
No 185
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=124.22 Aligned_cols=79 Identities=18% Similarity=0.418 Sum_probs=72.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999998 5789999998887654
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 92 ~ 92 (103)
T 2cqg_A 92 S 92 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 186
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=9.8e-16 Score=128.95 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999887654
No 187
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.8e-15 Score=126.01 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=72.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 4579999999999999999999999999987 888888 7899999999999999999999997 999999999888765
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 92 ~ 92 (104)
T 1wg5_A 92 S 92 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 188
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=130.34 Aligned_cols=81 Identities=23% Similarity=0.518 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=136.78 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCC----eEeeecc
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGKRC 222 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~--v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~----~l~G~~i 222 (648)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+. +|.+||..||+. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5689999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred CCCCCCCC
Q 006370 223 GTAPSEDN 230 (648)
Q Consensus 223 ~v~~~~~~ 230 (648)
.|..+...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99877654
No 190
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=122.60 Aligned_cols=76 Identities=16% Similarity=0.360 Sum_probs=72.6
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..+| ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999998875
No 191
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=4.7e-15 Score=131.43 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=75.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 799999999999888764
No 192
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=135.93 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||.++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 193
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.8e-16 Score=126.69 Aligned_cols=77 Identities=21% Similarity=0.400 Sum_probs=72.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999886654
No 194
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=128.12 Aligned_cols=79 Identities=18% Similarity=0.436 Sum_probs=72.5
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~-~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
...++|||+|||+.+|+++|+++|++|| |..|.|+++. .+++++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3568999999999999999999999999 9999999998 68999999999999999999999 8999999999988887
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 95 a~ 96 (100)
T 2j76_E 95 AD 96 (100)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 195
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.1e-15 Score=131.60 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|.|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999 89999999999887654
No 196
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=128.66 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=73.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecC-CCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~-~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.....++|||+|||+++|+++|+++|++|| |..|.|++++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344679999999999999999999999999 9999999998 68999999999999999999999 89999999999999
Q ss_pred CCCCCC
Q 006370 225 APSEDN 230 (648)
Q Consensus 225 ~~~~~~ 230 (648)
..+...
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 877643
No 197
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.57 E-value=2.1e-15 Score=134.06 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=77.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCC
Q 006370 226 PSE 228 (648)
Q Consensus 226 ~~~ 228 (648)
.+.
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 654
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=129.49 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=75.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++ +++++|||||+|.+.++|.+||..||+..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999996 599999999999999999999999999999999998876
Q ss_pred CC
Q 006370 227 SE 228 (648)
Q Consensus 227 ~~ 228 (648)
+.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 199
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6e-15 Score=126.13 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999998854 489999999999999999999999999999999987
Q ss_pred CCCC
Q 006370 226 PSED 229 (648)
Q Consensus 226 ~~~~ 229 (648)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2cq3_A 89 NATA 92 (103)
T ss_dssp ECCS
T ss_pred Eccc
Confidence 7654
No 200
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=3e-15 Score=129.35 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=73.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..++ ..|.|+.|.|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999864 899999998876
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 201
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=131.99 Aligned_cols=80 Identities=20% Similarity=0.453 Sum_probs=75.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999888753
No 202
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-15 Score=128.92 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 203
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=122.38 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=68.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI--NNKEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l--ng~~~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+||..| ++..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4579999999999999999999999999999998764 799999999999999999977 56789999999988
Q ss_pred Eeec
Q 006370 405 RARL 408 (648)
Q Consensus 405 ~~~~ 408 (648)
+...
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 7543
No 204
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-15 Score=132.78 Aligned_cols=80 Identities=8% Similarity=0.080 Sum_probs=74.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcE-EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+.+|+++|+++|++||.| ..|.|+++. +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 45799999999999999999999999999 889999997 899999999999999999999986 999999999999887
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 205
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=6.3e-15 Score=123.65 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=68.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCe--ecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE--FSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~--~~g~~i~v~~ 404 (648)
++++|||+|||+.+|+++|+++|++||.|+.|.|++ .+|||||+|.+.++|.+||..||+.. |.|+.|.|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 457999999999999999999999999999999975 37899999999999999999999886 7899999988
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 206
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=126.77 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=70.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...+|||+|||+.+|+++|+++|++| .|..|.|++++. ++++|||||+|.+.++|.+|| .||+..|.|+.|.|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999 899999999965 999999999999999999999 69999999999888655
No 207
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=128.27 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=72.8
Q ss_pred cceeeeecCCCCCCCHHHHH---HhhcccCcEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 006370 327 HVKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~d~~~~---~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (648)
..++|||+|||+.+++++|+ ++|++||.|..|.|+++..++ +++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 999999999999999887643 566999999999999999999999999999998
Q ss_pred EEEEEe
Q 006370 401 KVKLRA 406 (648)
Q Consensus 401 ~v~~~~ 406 (648)
+|.++.
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 887654
No 208
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=126.41 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44679999999999999999999999999999999999854 3799999999999999999999999999999999877
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 209
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=7e-15 Score=127.07 Aligned_cols=80 Identities=15% Similarity=0.322 Sum_probs=72.8
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 34679999999999999999999999999999999999999999999999999999999999976 59999999888876
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 210
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9e-15 Score=121.96 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=72.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++| .|..|.|+++ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 45799999999999999999999999 9999999999 789999999999999999999999 99999999998888764
No 211
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=123.77 Aligned_cols=75 Identities=11% Similarity=0.252 Sum_probs=67.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--eecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~--~~~g~~i~v~~ 404 (648)
..++|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||..||+. .|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4579999999999999999999999999999998764 789999999999999999998765 49999999988
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 88 a~~ 90 (104)
T 1wex_A 88 STS 90 (104)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 212
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.1e-15 Score=127.37 Aligned_cols=80 Identities=16% Similarity=0.377 Sum_probs=73.7
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.+ |.+|+..|||..|.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999887654
Q ss_pred C
Q 006370 409 S 409 (648)
Q Consensus 409 ~ 409 (648)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 213
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=127.03 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=72.2
Q ss_pred cceeeeecCCCCCC------CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC-e
Q 006370 327 HVKTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-N 399 (648)
Q Consensus 327 ~~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~ 399 (648)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|.+||..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35799999999999 789999999999999999998 36789999999999999999999999999999998 9
Q ss_pred eEEEEEee
Q 006370 400 SKVKLRAR 407 (648)
Q Consensus 400 i~v~~~~~ 407 (648)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 88877543
No 214
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1e-15 Score=127.45 Aligned_cols=79 Identities=25% Similarity=0.524 Sum_probs=73.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~~ 230 (648)
++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.+ |.+|+..||+..|.|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999877653
No 215
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=125.69 Aligned_cols=83 Identities=25% Similarity=0.579 Sum_probs=75.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||.. +..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999984 678999999887
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 77543
No 216
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-15 Score=129.01 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=73.3
Q ss_pred ccCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC--CeEeeecc
Q 006370 146 KIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRC 222 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~G~~i 222 (648)
...++++|||+|||+ ++|+++|+++|++||.|+.|+|+++ +|||||+|.+.++|.+||+.|++ ..|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345789999999999 9999999999999999999999765 58999999999999999998875 46999999
Q ss_pred CCCCCCCCCcce
Q 006370 223 GTAPSEDNDTLF 234 (648)
Q Consensus 223 ~v~~~~~~~~L~ 234 (648)
.|..+.....|.
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 1x4d_A 85 RVHLSQKYKRIK 96 (102)
T ss_dssp EEEEECCCTTSS
T ss_pred EEEECCCCCCCC
Confidence 998887665553
No 217
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=128.96 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.| .|+|++++ +++++|||||+|.+.++|++||+ +++..|.++.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 467899999999999999999999999955 99999997 89999999999999999999995 7999999998887654
Q ss_pred C
Q 006370 228 E 228 (648)
Q Consensus 228 ~ 228 (648)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 218
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=125.52 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 148 KKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
...++|||+|||+++|+++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+||+.||+..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999988765 89999999999999999999999999999999
Q ss_pred CCCCCCC
Q 006370 224 TAPSEDN 230 (648)
Q Consensus 224 v~~~~~~ 230 (648)
|..+...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 8877643
No 219
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.9e-15 Score=126.79 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=73.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+||+.||+..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999654 56899999999999999999999999999999999987
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7653
No 220
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=121.89 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=67.0
Q ss_pred eeeeecCCCCCC------CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC-eeE
Q 006370 329 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSK 401 (648)
Q Consensus 329 ~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~-~i~ 401 (648)
++|||+|||..+ |+++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|.+||..|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 779999999999999999987 36789999999999999999999999999999999 776
Q ss_pred E
Q 006370 402 V 402 (648)
Q Consensus 402 v 402 (648)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 221
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=127.45 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee-c
Q 006370 149 KEHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-R 221 (648)
Q Consensus 149 ~~~tlfV~nLp~~~------te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~-~ 221 (648)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|.+||..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 889999999999999999998 46899999999999999999999999999999998 9
Q ss_pred cCCCCCCCC
Q 006370 222 CGTAPSEDN 230 (648)
Q Consensus 222 i~v~~~~~~ 230 (648)
|.|..+.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 998877653
No 222
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.9e-15 Score=127.57 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~-v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|.+||+. ++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 46789999999999999999999999999987 888888 7899999999999999999999997 99999999998866
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 543
No 223
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=5.9e-15 Score=130.77 Aligned_cols=80 Identities=21% Similarity=0.486 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|.|..+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999999999999999999999999999 799999999999987765
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 224
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.1e-15 Score=129.57 Aligned_cols=80 Identities=23% Similarity=0.488 Sum_probs=75.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~ 229 (648)
.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|..+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47999999999999999999999999999999999999999999999999999999999997 99999999999887765
Q ss_pred C
Q 006370 230 N 230 (648)
Q Consensus 230 ~ 230 (648)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 225
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=122.88 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=69.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.| .|+.+ .+++++|||||+|.+.++|++||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 46899999999999999999999999987 56666 678999999999999999999999999999999998888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 90 ~ 90 (101)
T 2fc9_A 90 P 90 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 226
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=5.4e-15 Score=124.04 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=70.2
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCe--Eeeecc
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRC 222 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~--l~G~~i 222 (648)
....++++|||+|||+++|+++|+++|++||.|++|+|++ .+|+|||+|.+.++|.+|++.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445789999999999999999999999999999999974 47999999999999999999998765 779999
Q ss_pred CCCCCCC
Q 006370 223 GTAPSED 229 (648)
Q Consensus 223 ~v~~~~~ 229 (648)
.|..+..
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 8887754
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=6e-15 Score=130.71 Aligned_cols=83 Identities=17% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||..+|+++|+++|++||.|+.|.|+.+. +++++|||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999998877
Q ss_pred CCCC
Q 006370 228 EDND 231 (648)
Q Consensus 228 ~~~~ 231 (648)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6533
No 228
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.8e-15 Score=129.27 Aligned_cols=87 Identities=20% Similarity=0.350 Sum_probs=78.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEEecCCCC---CCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFSTN---RNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~---~~F~~~G~v~~v~i~~d~~tg---~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
.....++|||+|||+++|+++|+ ++|++||.|..|.|+++..++ +++|||||+|.+.++|++||+.||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999987754 566999999999999999999999999999
Q ss_pred eccCCCCCCCCCc
Q 006370 220 KRCGTAPSEDNDT 232 (648)
Q Consensus 220 ~~i~v~~~~~~~~ 232 (648)
+.|.|..+....+
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999988876554
No 229
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=119.58 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=67.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 45799999999999999999999999999999996 6799999999999999999999999999998888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 79 ~ 79 (90)
T 2dnq_A 79 N 79 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 230
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=124.94 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=73.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee--------cCC
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--------SDG 398 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~--------~g~ 398 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45799999999999999999999999999999999997 899999999999999999999999999999 567
Q ss_pred eeEEEEEe
Q 006370 399 NSKVKLRA 406 (648)
Q Consensus 399 ~i~v~~~~ 406 (648)
.|.|.++.
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 77777653
No 231
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=1.1e-14 Score=127.01 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=62.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4579999999999999999999999999999999765 8999999999999999999999999999833
No 232
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=8.7e-15 Score=128.38 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=73.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCc---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++|||+|||+++|+++|+++|++||. |..|.|+++.. ++++|||||+|.+.++|.+||. ||+..|.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 4578999999999999999999999999 89999999976 9999999999999999999999 99999999999998
Q ss_pred EEee
Q 006370 404 LRAR 407 (648)
Q Consensus 404 ~~~~ 407 (648)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7643
No 233
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=122.89 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=74.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++| .|..|+|+++ .+++++|||||+|.+.++|.+||. |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 789999999999999999999999 999999999998876
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 654
No 234
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.6e-15 Score=132.19 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=74.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999999887777777899999999999999999999999 99999999999998875
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 4
No 235
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=1.7e-14 Score=124.94 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=77.1
Q ss_pred CCcceeeeccCCCCCCCccccccceeeeecCCCCC-CCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 006370 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (648)
Q Consensus 305 ~~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A 383 (648)
.+..+.+..+.+.....+ ....++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|
T Consensus 6 ~g~~~~~~~s~~~~~~~~--~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDP--KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCSCCC--TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCCCCC--CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 456666666654333322 234579999999999 999999999999999999998 578999999999999
Q ss_pred HHHHHHhCCCeecCCeeEEEEEe
Q 006370 384 VACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+||..||+..|.|+.|+|.++.
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHcCCCEECCeEEEEEECC
Confidence 99999999999999998888764
No 236
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-15 Score=131.21 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEV-IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v-~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
...++|||+|||+++|+++|+++|++||.| ..|+|++++ +++++|||||+|.+.++|.+||+. ++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467899999999999999999999999999 899999998 899999999999999999999997 99999999988765
Q ss_pred CC
Q 006370 227 SE 228 (648)
Q Consensus 227 ~~ 228 (648)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 237
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-15 Score=125.43 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=78.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||..+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999743 7999999999999999999999999999999999
Q ss_pred CCCCCCcceecc
Q 006370 226 PSEDNDTLFVGN 237 (648)
Q Consensus 226 ~~~~~~~L~V~n 237 (648)
.+.....+.+++
T Consensus 85 ~a~~~~~~~~g~ 96 (99)
T 2cpj_A 85 FACHSASLTSGP 96 (99)
T ss_dssp ESSCCSCCCCCC
T ss_pred EcCCCCCCCCCC
Confidence 998888887765
No 238
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.9e-15 Score=127.56 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEE-ecCCCCCCcceEEEEEechhhHHHHHHhcC--CCeEeeeccC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~-~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~G~~i~ 223 (648)
...++|||+|||+++|+++|+++|++||. |..|.|+ .+..++.++|||||+|.+.++|.+||..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 36789999999999999999999999998 9999998 888889999999999999999999999996 5899999999
Q ss_pred CCCCCCC
Q 006370 224 TAPSEDN 230 (648)
Q Consensus 224 v~~~~~~ 230 (648)
|..+...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 8777643
No 239
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=2.6e-15 Score=120.36 Aligned_cols=74 Identities=30% Similarity=0.601 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 152 tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
+|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999995 88889999887653
No 240
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=5.3e-15 Score=132.51 Aligned_cols=78 Identities=8% Similarity=0.127 Sum_probs=73.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCc---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++|||+|||+++|+++|+++|++||. |..|.|++++. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4579999999999999999999999999 88999999976 9999999999999999999999 99999999999888
Q ss_pred EEe
Q 006370 404 LRA 406 (648)
Q Consensus 404 ~~~ 406 (648)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 241
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=120.27 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=68.3
Q ss_pred cccccceeeeecCCCCCCCHHHHHHhhccc--CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 006370 323 EIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (648)
Q Consensus 323 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (648)
......++|||+|||+.+|+++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 334456899999999999999999999999 999999874 6799999999999999999999999999998
Q ss_pred EEEEEe
Q 006370 401 KVKLRA 406 (648)
Q Consensus 401 ~v~~~~ 406 (648)
+|.++.
T Consensus 82 ~v~~a~ 87 (99)
T 2cpd_A 82 EVTLAK 87 (99)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 887653
No 242
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.3e-15 Score=127.33 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..+|||+|||+++|+++|+++|++| .|..|+|++++. |+++|||||+|.+.++|.+|| .|++..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 899999999965 999999999999999999999 589999999988876553
No 243
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=126.00 Aligned_cols=80 Identities=14% Similarity=0.336 Sum_probs=73.5
Q ss_pred cccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 325 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
....++|||+|||..+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999885 34899999999999999999999999999999999887
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 104 a~ 105 (109)
T 2err_A 104 AT 105 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 244
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.7e-15 Score=127.31 Aligned_cols=76 Identities=13% Similarity=0.359 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||..||+..|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 367899999999999999999999999999999999997 8999999999999999999999999999997665543
No 245
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=9.4e-15 Score=132.32 Aligned_cols=78 Identities=21% Similarity=0.534 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
..++|||+|||..+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999988754
No 246
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=3.5e-15 Score=130.91 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=73.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~---v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
....++|||+|||+++|+++|+++|++||. |..|+|+.++. ++++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999998 89999999976 9999999999999999999999 999999999887
Q ss_pred CCCC
Q 006370 224 TAPS 227 (648)
Q Consensus 224 v~~~ 227 (648)
|..+
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7554
No 247
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=3.1e-15 Score=134.07 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=73.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~---v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
....++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 346789999999999999999999999999 89999999977 9999999999999999999999 999999999887
Q ss_pred CCCC
Q 006370 224 TAPS 227 (648)
Q Consensus 224 v~~~ 227 (648)
|..+
T Consensus 119 V~~a 122 (136)
T 2hgl_A 119 VFKS 122 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7655
No 248
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.4e-16 Score=135.34 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=75.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
..++|||+|||..+|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999998 89999988999999999999999999999999999999999
Q ss_pred eeEEEEEe
Q 006370 399 NSKVKLRA 406 (648)
Q Consensus 399 ~i~v~~~~ 406 (648)
.|.|.++.
T Consensus 86 ~l~V~~a~ 93 (116)
T 2lcw_A 86 PIKVSFAT 93 (116)
Confidence 98888764
No 249
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5e-15 Score=129.34 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=70.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.+..+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 46799999999999999999999999998433332222378899999999999999999999999999999999998875
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 250
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=123.73 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=70.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3579999999999999999999999999999999876 7899999999999999999999999999998888765
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 251
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=124.66 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=68.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng--~~~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+||..||+ ..|.|+.|+|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4579999999999999999999999999999999875 79999999999999999999874 689999999988
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 252
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=8.7e-15 Score=126.23 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=68.9
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccC-cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.++|||+|||+.+|+++|+++|++|| .|..|.|+.. .++|||||+|.+.++|++||+.|||..|.|+.|+|.++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 47999999999999999999999999 8999998543 479999999999999999999999999999998888753
No 253
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=120.77 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=71.2
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++|+ .|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3468999999999999999999999874 5778888889999999999999999999999999999999999888876
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 90 ~ 90 (102)
T 2fc8_A 90 K 90 (102)
T ss_dssp C
T ss_pred c
Confidence 4
No 254
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=1.4e-14 Score=130.21 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred eEEEEEechhhHHHHHHhcCCCeEeeeccCC-----CCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecc
Q 006370 194 YAFVKFANKEHAKRALTEMKNPVICGKRCGT-----APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI 268 (648)
Q Consensus 194 ~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v-----~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~ 268 (648)
++|++|.+...+..|++.+++....|+.... ......++|||+|||..+|+++|+++|++||. |..|.|+.+.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~ 83 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR--VGDVYIPRDR 83 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC--CSEEECCCCS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--EEEEEEEecC
Confidence 5788899999999999998876665543221 12234678999999999999999999999998 9999999874
Q ss_pred cCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCC
Q 006370 269 QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP 320 (648)
Q Consensus 269 ~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~ 320 (648)
.+++++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+....
T Consensus 84 -~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i----~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 84 -YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMARYGRPP 130 (135)
T ss_dssp -SSSSCCSCCEEECSCHHHHHHHHTTTTTCCS----SSSCCEEEECCCCCCC
T ss_pred -CCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECCCCCCC
Confidence 4789999999999999999999999999987 5899999999876543
No 255
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=127.52 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.6
Q ss_pred cceeeeecCCCCCCCHHHHH----HhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
..++|||+|||+.+++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|..||..|||..|.|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 45789999999999999876 6999999999998854 5788999999999999999999999999999999999
Q ss_pred EEEee
Q 006370 403 KLRAR 407 (648)
Q Consensus 403 ~~~~~ 407 (648)
.++..
T Consensus 105 ~~a~~ 109 (127)
T 2a3j_A 105 TFSET 109 (127)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 88654
No 256
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=125.26 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=68.7
Q ss_pred cceeeeecCCCCC-CCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng--~~~~g~~i~v~ 403 (648)
..++|||+|||+. +|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+||..||+ ..|.|+.|.|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4679999999998 99999999999999999999974 479999999999999999998864 56999999999
Q ss_pred EEeecC
Q 006370 404 LRARLS 409 (648)
Q Consensus 404 ~~~~~~ 409 (648)
++....
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 875443
No 257
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=123.56 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee-----ecc
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-----KRC 222 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G-----~~i 222 (648)
...++|||+|||+++|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999875 899999999999999999999999999 888
Q ss_pred CCCCCCC
Q 006370 223 GTAPSED 229 (648)
Q Consensus 223 ~v~~~~~ 229 (648)
.|..+..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8877654
No 258
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=4.3e-15 Score=119.08 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=70.7
Q ss_pred eeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 330 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
+|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999899999999999999999999998 5899999999888753
No 259
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=122.40 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=69.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc--CCCeEeeeccC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCG 223 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l--~~~~l~G~~i~ 223 (648)
...+.++|||+|||+++|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+||+.| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3447789999999999999999999999999999998754 899999999999999999976 46789999999
Q ss_pred CCCCCC
Q 006370 224 TAPSED 229 (648)
Q Consensus 224 v~~~~~ 229 (648)
|..+..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 877653
No 260
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=4.2e-15 Score=128.03 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~---v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
....++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999977 9999999999999999999999 999999999988
Q ss_pred CCCCC
Q 006370 224 TAPSE 228 (648)
Q Consensus 224 v~~~~ 228 (648)
|..+.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 76653
No 261
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=125.58 Aligned_cols=83 Identities=20% Similarity=0.435 Sum_probs=75.6
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
......++|||+|||.++|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999885 458999999999999999999999999999999998
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77654
No 262
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.6e-14 Score=120.43 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=69.0
Q ss_pred cceeeeecCCCC-CCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 468999999998 99999999999999999999983 789999999999999999999999999999999987
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 653
No 263
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-15 Score=133.20 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999987777777899999999999999999999999 9999999998887665
Q ss_pred C
Q 006370 228 E 228 (648)
Q Consensus 228 ~ 228 (648)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 264
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.5e-15 Score=128.77 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=71.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEV----IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v----~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
.....+|||+|||+++|+++|+++|++||.| ..|+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467899999999999999999999999976 68999998 5899999999999999999999996 8899999988
Q ss_pred CCCCC
Q 006370 223 GTAPS 227 (648)
Q Consensus 223 ~v~~~ 227 (648)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 76544
No 265
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=117.57 Aligned_cols=72 Identities=25% Similarity=0.533 Sum_probs=66.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 458999999999999999999999999999999964 399999999999999999999999999998888764
No 266
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-15 Score=126.74 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=74.2
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC--CCeEeeeccC
Q 006370 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~--~~~l~G~~i~ 223 (648)
...+++|||+|||++ +|+++|+++|++||.|+.|+|++ ++|||||+|.+.++|.+||+.|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446899999999998 99999999999999999999963 48999999999999999999885 4568999999
Q ss_pred CCCCCCCCcceec
Q 006370 224 TAPSEDNDTLFVG 236 (648)
Q Consensus 224 v~~~~~~~~L~V~ 236 (648)
|..+.....+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9988877766554
No 267
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=127.61 Aligned_cols=83 Identities=16% Similarity=0.322 Sum_probs=74.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
.....++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+||..||+..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999998853 6889999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 006370 222 CGTAPSEDND 231 (648)
Q Consensus 222 i~v~~~~~~~ 231 (648)
|.|..+....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9998876543
No 268
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=126.33 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=70.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC--CeEeeeccC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCG 223 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~G~~i~ 223 (648)
...+.++|||+|||+++|+++|+++|++||.|+.|+|+++ +|||||+|.+.++|.+||+.|++ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446899999999999999999999999999999999865 79999999999999999998874 689999999
Q ss_pred CCCCCC
Q 006370 224 TAPSED 229 (648)
Q Consensus 224 v~~~~~ 229 (648)
|..+..
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 877654
No 269
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=5.1e-15 Score=133.04 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++|| |+.|+|++++. ++++|||||+|.+.++|++|| .+++..|.|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999 67999999976 999999999999999999999 68999999999988766
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 270
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=7e-15 Score=158.09 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=104.4
Q ss_pred HHHHHhhccCCeEEEEEEe----cC-CCCCCcceE--EEEEechhhHHHHHHhcCCCeEeee---------------ccC
Q 006370 166 DVRKVFERIGEVIEVRLHK----NF-STNRNKGYA--FVKFANKEHAKRALTEMKNPVICGK---------------RCG 223 (648)
Q Consensus 166 dL~~~F~~~G~v~~v~i~~----d~-~tg~~kG~a--fV~F~~~e~A~~Al~~l~~~~l~G~---------------~i~ 223 (648)
+|..+|.++++|..|..+. +. .+....|++ |+.|.....+..++..++...+..+ .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4889999999998874332 21 122223333 7778765544433322211111000 000
Q ss_pred --------CCCCCCCCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHh
Q 006370 224 --------TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (648)
Q Consensus 224 --------v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l 295 (648)
.......++|||+||+..+|+++|.++|++||. |..|.|+.+. .+++++|||||+|.+.++|.+||..|
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~--I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGP--IKRIHMVYSK-RSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC--eeEEEeeccC-CCCCccceEEEeeccHHHHHHHHHHc
Confidence 111234579999999999999999999999999 9999999884 48899999999999999999999999
Q ss_pred CCCCeeeCCCCcceeeeccCCC
Q 006370 296 QKPDVVFGHPERTVKVAFAEPL 317 (648)
Q Consensus 296 ~~~~~~~g~~~~~l~v~~a~~~ 317 (648)
|+..| .++.|.|.++.+.
T Consensus 165 ng~~i----~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 165 DGKKI----DGRRVLVDVERGR 182 (437)
T ss_pred CCCEE----CCEEEEEEEeCCC
Confidence 99988 5899999998753
No 271
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=118.33 Aligned_cols=74 Identities=14% Similarity=0.335 Sum_probs=68.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec--CCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~ 404 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..||+..|. |+.|+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 3579999999999999999999999999999999754 789999999999999999999999999 99999887
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 90 a~ 91 (97)
T 1why_A 90 AK 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 272
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=1.8e-14 Score=126.96 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=71.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~--~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
.....++|||+|||+++|+++|+++|++| .|+ .|+|++++. |+++|||||+|.+.++|.+||+. ++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34467899999999999999999999999 677 999999977 99999999999999999999985 67899999988
Q ss_pred CCCC
Q 006370 224 TAPS 227 (648)
Q Consensus 224 v~~~ 227 (648)
|..+
T Consensus 115 V~~a 118 (126)
T 2hgm_A 115 VFKS 118 (126)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 7655
No 273
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=8.5e-15 Score=126.13 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=72.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCc---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++|||+|||+.+|+++|+++|++||. |..|.|+.+.. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 4579999999999999999999999998 89999999977 9999999999999999999999 99999999998888
Q ss_pred EEe
Q 006370 404 LRA 406 (648)
Q Consensus 404 ~~~ 406 (648)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 754
No 274
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=122.00 Aligned_cols=74 Identities=16% Similarity=0.362 Sum_probs=69.3
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEee
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (648)
++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999877 689999999999999999999999999999988887643
No 275
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.6e-14 Score=119.60 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=71.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||.++|+++|+++|++||.|..|+|+ +++|||||+|.+.++|.+||..||+..|.|+.|.|..
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999997 4589999999999999999999999999999999988
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 276
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=115.86 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=68.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~~~ 405 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..| |+..|.|+.|+|.++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4579999999999999999999999999999999864 789999999999999999999 999999999988875
No 277
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=117.97 Aligned_cols=75 Identities=29% Similarity=0.569 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||.++|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 467899999999999999999999999999999997 679999999999999999999999999999999877
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 278
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=119.59 Aligned_cols=75 Identities=20% Similarity=0.461 Sum_probs=69.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 4579999999999999999999999999999999754 7899999999999999999999999999999998864
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 279
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-15 Score=132.94 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~--------v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
.+.++|||+|||+++|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999999 9999998999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 006370 220 KRCGTAPSED 229 (648)
Q Consensus 220 ~~i~v~~~~~ 229 (648)
+.|.|..+..
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999887754
No 280
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.6e-14 Score=121.77 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=70.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999999864 57899999999999999999999999999999999976
Q ss_pred ec
Q 006370 407 RL 408 (648)
Q Consensus 407 ~~ 408 (648)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 281
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=2.9e-14 Score=121.59 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=74.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||. |+..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999997 89999999999999999999998 9999999999988876
Q ss_pred ecC
Q 006370 407 RLS 409 (648)
Q Consensus 407 ~~~ 409 (648)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 282
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=1.3e-14 Score=125.13 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G-~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
....++|||+|||+++|+++|+++|++|| .|..|.|+. ..++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 899998853 3589999999999999999999999999999999887
Q ss_pred CCCC
Q 006370 226 PSED 229 (648)
Q Consensus 226 ~~~~ 229 (648)
.+..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
No 283
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=122.58 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC--CeEeeeccCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~--~~l~G~~i~v 224 (648)
..+.++|||+|||+++|+++|+++|++||.|+.|.|+++ +|||||+|.+.++|.+||+.|++ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999998753 79999999999999999998865 4589999988
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 77754
No 284
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=122.34 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=67.9
Q ss_pred ceeeee--cCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee-----cCCee
Q 006370 328 VKTVFL--DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF-----SDGNS 400 (648)
Q Consensus 328 ~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~-----~g~~i 400 (648)
+++||| +||++.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||+.| .++.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 568999 77999999999999999999999998864 378999999999999999999999998 67777
Q ss_pred EEEEEeecCCCC
Q 006370 401 KVKLRARLSNPM 412 (648)
Q Consensus 401 ~v~~~~~~~~~~ 412 (648)
.|.++.......
T Consensus 99 ~v~~a~~~p~~~ 110 (114)
T 2cq2_A 99 YLNFVEKVQWSG 110 (114)
T ss_dssp EEEEESCCCCSS
T ss_pred EEEecccCcccC
Confidence 777765544433
No 285
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.8e-14 Score=124.30 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=70.4
Q ss_pred eeeeecCC----CCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 006370 329 KTVFLDGV----PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST----HEA----AVACIN--AINNKE 394 (648)
Q Consensus 329 ~~l~v~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~----~~~----A~~Ai~--~lng~~ 394 (648)
+.|+|+|| |+.+++++|+++|++||.|..|.++.|+.||.++|||||+|.+ ++. |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 322 888888 789999
Q ss_pred ecCCeeEEEEE
Q 006370 395 FSDGNSKVKLR 405 (648)
Q Consensus 395 ~~g~~i~v~~~ 405 (648)
|.|+.|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999875
No 286
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=5.8e-14 Score=122.56 Aligned_cols=78 Identities=10% Similarity=0.214 Sum_probs=72.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3579999999999999999999999999999999876 4569999999999999999999999999999999999875
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 287
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=121.44 Aligned_cols=80 Identities=25% Similarity=0.512 Sum_probs=73.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446789999999999999999999999999999999865 7999999999999999999999999999999998
Q ss_pred CCCCCC
Q 006370 226 PSEDND 231 (648)
Q Consensus 226 ~~~~~~ 231 (648)
.+....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 876544
No 288
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.5e-14 Score=116.09 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=67.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 457999999999999999999999999999999974 399999999999999999999999999999888764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 80 ~ 80 (90)
T 2dnp_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 289
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=1.8e-14 Score=135.61 Aligned_cols=82 Identities=17% Similarity=0.330 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998777
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 543
No 290
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=127.10 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=70.1
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcE----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDV----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+++++|||||+|.+.++|.+||.. |+..|.++.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 4699999999999999999999999875 68999988 5899999999999999999999985 9999999998887
Q ss_pred EEe
Q 006370 404 LRA 406 (648)
Q Consensus 404 ~~~ 406 (648)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 653
No 291
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=3.7e-14 Score=133.48 Aligned_cols=82 Identities=7% Similarity=0.162 Sum_probs=77.4
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999997
Q ss_pred eec
Q 006370 406 ARL 408 (648)
Q Consensus 406 ~~~ 408 (648)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 292
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-15 Score=126.09 Aligned_cols=78 Identities=12% Similarity=0.242 Sum_probs=71.6
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4579999999999999999999999999887 667777789999999999999999999998 99999999998888753
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=117.65 Aligned_cols=73 Identities=15% Similarity=0.351 Sum_probs=64.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+.+|+++|+++|++||.|..| +.+..+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 34799999999999999999999999999987 55555554 99999999999999999 9999999999888644
No 294
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=122.31 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=71.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999977 56666 6789999999999999999999999999999999999877
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7543
No 295
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=2e-14 Score=119.09 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|++.||+..+.|+.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 57899999999999999999999999 99999884 679999999999999999999999999999999999998
Q ss_pred CCCcceeccc
Q 006370 229 DNDTLFVGNI 238 (648)
Q Consensus 229 ~~~~L~V~nL 238 (648)
....|++.|.
T Consensus 77 ~~~~~~~~n~ 86 (88)
T 1wg1_A 77 TDALLCSGPS 86 (88)
T ss_dssp CCCCCSCCCT
T ss_pred CCceEecCCC
Confidence 8877777664
No 296
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.1e-14 Score=119.49 Aligned_cols=78 Identities=15% Similarity=0.393 Sum_probs=70.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe--eeccCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC--GKRCGT 224 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~--G~~i~v 224 (648)
....++|||+|||.++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||+.||+..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346789999999999999999999999999999999643 789999999999999999999999999 899988
Q ss_pred CCCCCC
Q 006370 225 APSEDN 230 (648)
Q Consensus 225 ~~~~~~ 230 (648)
..+...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 877643
No 297
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.5e-14 Score=115.49 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc-CCCeEeeeccCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTA 225 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l-~~~~l~G~~i~v~ 225 (648)
....++|||+|||.++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..| ++..|.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999863 799999999999999999998 9999999999886
Q ss_pred CC
Q 006370 226 PS 227 (648)
Q Consensus 226 ~~ 227 (648)
.+
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 298
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.7e-14 Score=118.16 Aligned_cols=76 Identities=13% Similarity=0.328 Sum_probs=68.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+|+++|+++|++||.|. +.|+.+ .++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457999999999999999999999999997 666543 578999999999999999999999999999999998764
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 299
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=115.87 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|.+||. |++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 55666665 99999999999999999 999999999999987
Q ss_pred CCC
Q 006370 227 SED 229 (648)
Q Consensus 227 ~~~ 229 (648)
+..
T Consensus 79 a~~ 81 (94)
T 2e5g_A 79 REQ 81 (94)
T ss_dssp SCC
T ss_pred CCc
Confidence 754
No 300
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.2e-13 Score=116.61 Aligned_cols=72 Identities=14% Similarity=0.343 Sum_probs=67.4
Q ss_pred cceeeeecCCCC-CCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+ .+++++|+++|++||.|..|.| ++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 468999999998 9999999999999999999998 3789999999999999999999999999999999876
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 93 ~ 93 (97)
T 2xnq_A 93 S 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-15 Score=126.93 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+||+ |++..|.|+.|.|..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999888 677777889999999999999999999999 9999999999998877
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 302
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=121.45 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=74.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++|+ .|.++.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345789999999999999999999999873 78888888899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 77653
No 303
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.48 E-value=3.8e-14 Score=124.88 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=69.9
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEE--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++| .|+ .|.|++++. |+++|||||+|.+.++|.+||. +++..|.|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 45789999999999999999999999 677 899999976 9999999999999999999998 578999999988876
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 304
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=4.2e-14 Score=119.35 Aligned_cols=78 Identities=14% Similarity=0.390 Sum_probs=71.6
Q ss_pred cceeeeecCCCCCCCHHHHH----HhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
..++|||+|||..+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45799999999999999999 9999999999999874 4778999999999999999999999999999999999
Q ss_pred EEEee
Q 006370 403 KLRAR 407 (648)
Q Consensus 403 ~~~~~ 407 (648)
.++..
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 87644
No 305
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=2.3e-14 Score=122.25 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||. ++..|.|+.|.|..+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 99999999999999999999998 7888888888765543
No 306
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-15 Score=128.24 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|.+..+..++.++|||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 36789999999999999999999999999844433333337899999999999999999999999999999999998877
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 307
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=7.5e-14 Score=120.28 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=71.0
Q ss_pred hccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 145 ~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
......++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345578999999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred CCCCCC
Q 006370 225 APSEDN 230 (648)
Q Consensus 225 ~~~~~~ 230 (648)
..+...
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 877653
No 308
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=7.3e-15 Score=133.68 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=72.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--E---EecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR--L---HKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~--i---~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
.....++|||+|||+++|+++|+++|++||.|..|. + +....+++++|||||+|.+.++|.+||..||+..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 355788999999999999999999999999987641 1 11124689999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 006370 221 RCGTAPSED 229 (648)
Q Consensus 221 ~i~v~~~~~ 229 (648)
.|.|..+..
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999877753
No 309
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.1e-13 Score=116.85 Aligned_cols=78 Identities=21% Similarity=0.466 Sum_probs=69.8
Q ss_pred hhccCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 144 DRKIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 144 ~~~~~~~~tlfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
.......++|||+|||. ++|+++|+++|++||.|..|.|. +|||||+|.+.++|.+||..|++..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 99999999999999999999983 7899999999999999999999999999999
Q ss_pred CCCCCCC
Q 006370 223 GTAPSED 229 (648)
Q Consensus 223 ~v~~~~~ 229 (648)
.|..+..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9877654
No 310
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.5e-15 Score=126.63 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|.|+. +++||||+|.+.++|.+||..||+..|.|+.|.|..+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999863 57899999999999999999999999999999988765
Q ss_pred CCCcceeccc
Q 006370 229 DNDTLFVGNI 238 (648)
Q Consensus 229 ~~~~L~V~nL 238 (648)
. .++..+.
T Consensus 83 ~--~~~~~~~ 90 (111)
T 1whx_A 83 I--GVFGAAP 90 (111)
T ss_dssp T--TTTCCCC
T ss_pred C--CccCCCC
Confidence 3 3444443
No 311
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=119.32 Aligned_cols=78 Identities=19% Similarity=0.384 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|. +.++. +.++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999997 66665 378999999999999999999999999999999998877
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
...
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 312
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=8.1e-14 Score=120.06 Aligned_cols=73 Identities=16% Similarity=0.396 Sum_probs=67.9
Q ss_pred ccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 326 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
...++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 356899999999999999999999999999999996 789999999999999999999999999999888765
Q ss_pred e
Q 006370 406 A 406 (648)
Q Consensus 406 ~ 406 (648)
.
T Consensus 101 ~ 101 (108)
T 2jvo_A 101 K 101 (108)
T ss_dssp S
T ss_pred c
Confidence 3
No 313
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=124.25 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=64.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCC---CCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST---NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~t---g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4678999999999999999999999999999 888888777 7999999999999999999999883 245554443
No 314
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=3.6e-14 Score=119.76 Aligned_cols=82 Identities=21% Similarity=0.459 Sum_probs=74.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~----~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
....++|||+|||.++|+++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3478999999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 006370 223 GTAPSEDND 231 (648)
Q Consensus 223 ~v~~~~~~~ 231 (648)
.|..+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 998776544
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-14 Score=118.01 Aligned_cols=75 Identities=11% Similarity=0.228 Sum_probs=68.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46799999999999999999999999987665 3568899999999999999999999999999999998888753
No 316
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.4e-14 Score=117.25 Aligned_cols=73 Identities=15% Similarity=0.338 Sum_probs=65.3
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCc-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CeecCCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN-KEFSDGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng-~~~~g~~i~v~~ 404 (648)
..++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||..||+ ..|.|+.|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4579999999999999999999999999 5555552 588999999999999999999999 999999999887
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 80 a~ 81 (93)
T 2cqh_A 80 SV 81 (93)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 317
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.4e-14 Score=121.81 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=71.0
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEec----hhh----HHHHHH--hcCCCe
Q 006370 151 HEIFIGGL----DRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN----KEH----AKRALT--EMKNPV 216 (648)
Q Consensus 151 ~tlfV~nL----p~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~----~e~----A~~Al~--~l~~~~ 216 (648)
..|||+|| |+.+++.+|+++|++||+|.+|.++.|+.||+++|||||+|.+ .+. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred EeeeccCCCCCCC
Q 006370 217 ICGKRCGTAPSED 229 (648)
Q Consensus 217 l~G~~i~v~~~~~ 229 (648)
|.|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999998876543
No 318
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.3e-14 Score=119.75 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=67.1
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.++|||+|||..+|+++|+++|++||.|..|.|+ +++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4799999999999999999999999999999997 35899999999999999999999999999999887764
No 319
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.7e-14 Score=118.37 Aligned_cols=75 Identities=21% Similarity=0.482 Sum_probs=67.6
Q ss_pred ccCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 146 KIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~-~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
...+.++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+||..|++..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345789999999998 99999999999999999999984 789999999999999999999999999999988
Q ss_pred CCCC
Q 006370 225 APSE 228 (648)
Q Consensus 225 ~~~~ 228 (648)
..+.
T Consensus 78 ~~a~ 81 (96)
T 2kvi_A 78 EVSS 81 (96)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 7664
No 320
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=8.6e-14 Score=115.70 Aligned_cols=76 Identities=32% Similarity=0.546 Sum_probs=69.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999973 3999999999999999999999999999999887
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 321
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=2.9e-13 Score=115.59 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred cceeeeecCCCC-----CCCHHHHHHhhcccCcEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 006370 327 HVKTVFLDGVPP-----HWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (648)
Q Consensus 327 ~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~d~~~-~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (648)
.+++|+|+||.. ..++++|+++|++||.|..|.|++++.+ ++++|||||+|.+.++|.+|+..|||+.|.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457899999963 2378999999999999999999998654 6889999999999999999999999999999999
Q ss_pred EEEEEe
Q 006370 401 KVKLRA 406 (648)
Q Consensus 401 ~v~~~~ 406 (648)
.|.++.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998864
No 322
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=8.1e-14 Score=116.40 Aligned_cols=77 Identities=30% Similarity=0.464 Sum_probs=70.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345779999999999999999999999999999999963 399999999999999999999999999999988
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77654
No 323
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=8e-14 Score=119.09 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999986 459999999999999999999999999999988777
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 324
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=8.3e-14 Score=141.77 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe-eeccCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAP 226 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~-G~~i~v~~ 226 (648)
...++|||+|||..+|+++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+||..||+..|. |+.|.|..
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 357899999999999999999999999999999998653 689999999999999999999999999 99998876
Q ss_pred CC
Q 006370 227 SE 228 (648)
Q Consensus 227 ~~ 228 (648)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 54
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=1.8e-13 Score=113.22 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=68.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 35789999999999999999999999 99999884 579999999999999999999999999999999998864
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 326
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=7.2e-14 Score=121.92 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
..++|||+|||+++|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 5689999999999999999999999999999999765 89999999999999999999999999998554
No 327
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=116.00 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERI--GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~--G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
...++|||+|||+++|+++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367899999999999999999999999 999998874 6799999999999999999999999999999998
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 77654
No 328
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=114.10 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=69.4
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
..++|||+|||+.+|+++|+++|++||.|..| .|+.++.++ .|||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999 588876544 3999999999999999999999999999999876
Q ss_pred ee
Q 006370 406 AR 407 (648)
Q Consensus 406 ~~ 407 (648)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=3e-14 Score=120.00 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
...++|||+|||+.+|+++|+++|++||.|..| ..++.++|||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 367899999999999999999999999987665 356899999999999999999999999999999999988776
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 330
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.4e-13 Score=112.52 Aligned_cols=72 Identities=15% Similarity=0.371 Sum_probs=65.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4579999996 89999999999999999999984 468999999999999999999999999999998887653
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=4.9e-13 Score=117.69 Aligned_cols=74 Identities=7% Similarity=0.244 Sum_probs=65.4
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCeecC--CeeEEEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 404 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~-afV~F~~~~~A~~Ai~~lng~~~~g--~~i~v~~ 404 (648)
..+|||+||++.+|+++|+++|++||.|..|.|+.+ .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 457899999999999999999999999999998764 3688 9999999999999999999999999 5555555
Q ss_pred Ee
Q 006370 405 RA 406 (648)
Q Consensus 405 ~~ 406 (648)
+.
T Consensus 103 ak 104 (130)
T 3zzy_A 103 SK 104 (130)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 332
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=111.18 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=69.8
Q ss_pred CCCCE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 148 KKEHE-IFIGGLDRDATQED----VRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 148 ~~~~t-lfV~nLp~~~te~d----L~~~F~~~-G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
.+..| |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|.+|++.|++..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999988 55899999 599988 33 99999999999999999999999999999
Q ss_pred cCCCCCCCCCcceec
Q 006370 222 CGTAPSEDNDTLFVG 236 (648)
Q Consensus 222 i~v~~~~~~~~L~V~ 236 (648)
|+|..+...+.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999887777653
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=4.4e-13 Score=122.52 Aligned_cols=77 Identities=6% Similarity=0.174 Sum_probs=68.7
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecC--CeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g--~~i~v~~ 404 (648)
...+|||+||++.+|+++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3468999999999999999999999999999999654 257899999999999999999999999966 8888887
Q ss_pred Eee
Q 006370 405 RAR 407 (648)
Q Consensus 405 ~~~ 407 (648)
+..
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 643
No 334
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=1.8e-13 Score=118.34 Aligned_cols=73 Identities=29% Similarity=0.583 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..++|||+|||++ +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+||..|++..|.|+.|.|..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999998877
Q ss_pred CC
Q 006370 228 ED 229 (648)
Q Consensus 228 ~~ 229 (648)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 335
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.43 E-value=4e-14 Score=128.74 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=69.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV--L---ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~--i---~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (648)
..++|||+|||+.+|+++|+++|++||.|..|. + ++...+++++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457999999999999999999999999887641 1 11124688999999999999999999999999999999999
Q ss_pred EEEEee
Q 006370 402 VKLRAR 407 (648)
Q Consensus 402 v~~~~~ 407 (648)
|.++..
T Consensus 124 V~~a~~ 129 (143)
T 3egn_A 124 VQFARS 129 (143)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 988754
No 336
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=9.3e-13 Score=115.45 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCeecCC--eeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSDG--NSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~-afV~F~~~~~A~~Ai~~lng~~~~g~--~i~v~ 403 (648)
....|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|.+|++.|||..|.|+ .|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 4456889999999999999999999999999999652 286 99999999999999999999999984 66666
Q ss_pred EEe
Q 006370 404 LRA 406 (648)
Q Consensus 404 ~~~ 406 (648)
++.
T Consensus 98 ~Ak 100 (124)
T 2e5i_A 98 YAR 100 (124)
T ss_dssp CCS
T ss_pred Eec
Confidence 543
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=8.4e-13 Score=126.10 Aligned_cols=123 Identities=14% Similarity=0.251 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCcceeeeccCCCCCCCc--cccccceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEe
Q 006370 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 361 (648)
Q Consensus 284 ~~~~A~~A~~~l~~~~~~~g~~~~~l~v~~a~~~~~~~~--~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~ 361 (648)
+.+.+..|++......+.....+..++.....+...... ......++|||+|||+.+|+++|+++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 456677777655333444433333333321122111110 012345799999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEeec
Q 006370 362 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (648)
Q Consensus 362 ~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (648)
++. ++.++|||||+|.+.++|.+||..+ +..|.|+.|.|.++..+
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 985 5889999999999999999999765 45999999999876544
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=116.08 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v-~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~ 227 (648)
..++|||+|||+++|+++|+++|++||.|..| .|+.++.++. |||+|.+.++|.+||..||+..|.|+.|.|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57899999999999999999999999999999 5877765443 999999999999999999999999999998777
Q ss_pred CCC
Q 006370 228 EDN 230 (648)
Q Consensus 228 ~~~ 230 (648)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 339
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=117.41 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=64.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~---~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|.+||+.|+ .++|+.+.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 357999999999999999999999999999 888888777 7999999999999999999999984 3666655443
No 340
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=108.23 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=63.4
Q ss_pred eeeeecCCCCCCCHHH----HHHhhccc-CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEE
Q 006370 329 KTVFLDGVPPHWKENQ----IRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (648)
+.|||+|||+.+++++ |+++|++| |.|..| ++ |||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999887 55899999 599988 23 999999999999999999999999999999998
Q ss_pred EEeecCC
Q 006370 404 LRARLSN 410 (648)
Q Consensus 404 ~~~~~~~ 410 (648)
++...+.
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 8765443
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-13 Score=115.72 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC-CeEeeeccCCC
Q 006370 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN-PVICGKRCGTA 225 (648)
Q Consensus 148 ~~~~tlfV~nLp~~~te~dL~~~F~~~G~-v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~-~~l~G~~i~v~ 225 (648)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||+.||+ ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6666552 489999999999999999999999 99999999987
Q ss_pred CCCC
Q 006370 226 PSED 229 (648)
Q Consensus 226 ~~~~ 229 (648)
.+..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 7754
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=5.4e-13 Score=110.00 Aligned_cols=70 Identities=16% Similarity=0.447 Sum_probs=65.2
Q ss_pred cceeeeecCCCCCCCHHHHHHhhccc----C-------cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGY----G-------DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~ 395 (648)
..++|||+|||+.+|+++|+++|++| | .|..|.+.++ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 8 9999999754 799999999999999999 9999999
Q ss_pred cCCeeEEE
Q 006370 396 SDGNSKVK 403 (648)
Q Consensus 396 ~g~~i~v~ 403 (648)
.|+.|+|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998875
No 343
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.4e-13 Score=112.10 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~ 226 (648)
....++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 99999999999999999999984 5689999999999999999999999999999999887
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.8e-13 Score=116.49 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=64.2
Q ss_pred cCCCCEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE-----ee
Q 006370 147 IKKEHEIFI--GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-----CG 219 (648)
Q Consensus 147 ~~~~~tlfV--~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l-----~G 219 (648)
..+.++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.||+..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346789999 77999999999999999999999998853 379999999999999999999999988 56
Q ss_pred eccCCC
Q 006370 220 KRCGTA 225 (648)
Q Consensus 220 ~~i~v~ 225 (648)
++|.|.
T Consensus 96 ~~l~v~ 101 (114)
T 2cq2_A 96 ITLYLN 101 (114)
T ss_dssp EECEEE
T ss_pred cEEEEE
Confidence 766554
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=7.7e-13 Score=112.99 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=72.5
Q ss_pred cCCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEEecCCC-CCCcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 147 IKKEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 147 ~~~~~tlfV~nLp~-----~~te~dL~~~F~~~G~v~~v~i~~d~~t-g~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
...+++|+|+||.. +.++++|+++|++||.|++|+|++++.+ ++++|+|||+|.+.++|.+|++.||+..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34789999999973 3478999999999999999999998754 68999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 006370 221 RCGTAPSE 228 (648)
Q Consensus 221 ~i~v~~~~ 228 (648)
.|.|..+.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99887664
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=7.2e-13 Score=109.75 Aligned_cols=70 Identities=13% Similarity=0.359 Sum_probs=59.0
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec--CCeeEEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 404 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~ 404 (648)
..++|||+|||+++|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+ |++..+. |+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 4579999999999999999999999999999999875 79999999999999873 6777766 55555544
Q ss_pred E
Q 006370 405 R 405 (648)
Q Consensus 405 ~ 405 (648)
+
T Consensus 81 a 81 (89)
T 3d2w_A 81 A 81 (89)
T ss_dssp C
T ss_pred c
Confidence 3
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=3.4e-13 Score=111.20 Aligned_cols=70 Identities=19% Similarity=0.470 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~----G-------~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
..++|||+|||+++|+++|+++|++| | .|..|.+.++ +|||||+|.+.++|.+|| .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999999644 899999999999999999 9999999
Q ss_pred eeeccCCC
Q 006370 218 CGKRCGTA 225 (648)
Q Consensus 218 ~G~~i~v~ 225 (648)
.|+.|.|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998775
No 348
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=1.1e-12 Score=115.39 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcce-EEEEEechhhHHHHHHhcCCCeEee--eccCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTA 225 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~l~~~~l~G--~~i~v~ 225 (648)
.-..|||+||++.+|+++|+++|++||.|..|+|+.. ++|+ |||+|.+.++|.+|++.||+..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3356789999999999999999999999999998764 3677 9999999999999999999999998 888888
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.++..
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 77654
No 349
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=6.5e-13 Score=110.03 Aligned_cols=74 Identities=26% Similarity=0.449 Sum_probs=60.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE--eeeccCC
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI--CGKRCGT 224 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l--~G~~i~v 224 (648)
.....+|||+|||+++|+++|+++|++||.|++|+|+++ ++|||||+|.+.++|.+ |++..+ .|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 447799999999999999999999999999999999864 79999999999999984 344444 4777777
Q ss_pred CCCCC
Q 006370 225 APSED 229 (648)
Q Consensus 225 ~~~~~ 229 (648)
..+.+
T Consensus 79 ~~a~~ 83 (89)
T 3d2w_A 79 SNAEP 83 (89)
T ss_dssp EECC-
T ss_pred EEcCC
Confidence 66543
No 350
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=1.1e-12 Score=119.97 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee--eccCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG--KRCGTAP 226 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G--~~i~v~~ 226 (648)
.-.+|||+||++.+|+++|+++|++||.|+.|+|+.. .++|||||+|.+.++|.+|++.||+..|.| +.|+|..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457899999999999999999999999999999754 368899999999999999999999999966 8888887
Q ss_pred CCCC
Q 006370 227 SEDN 230 (648)
Q Consensus 227 ~~~~ 230 (648)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7653
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.2e-12 Score=125.01 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|.+||+.++ ..|.|+.|.|....
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 35799999999999999999999999999999999985 58999999999999999999998665 58999999887654
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=2.2e-12 Score=110.16 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=68.6
Q ss_pred cceeeeecCCC--CCCC--------HHHHHHhhcccCcEEEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCe
Q 006370 327 HVKTVFLDGVP--PHWK--------ENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNKE 394 (648)
Q Consensus 327 ~~~~l~v~nLp--~~~t--------~~~l~~~f~~~G~v~~v~i~~d~~~--~~~~G~afV~F~~~~~A~~Ai~~lng~~ 394 (648)
++++|.|.|+- ..+. .++|+++|++||.|..|.|+++..+ ++++|||||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35688899983 2332 3799999999999999999988755 3689999999999999999999999999
Q ss_pred ecCCeeEEEEE
Q 006370 395 FSDGNSKVKLR 405 (648)
Q Consensus 395 ~~g~~i~v~~~ 405 (648)
|.|+.|.|.+.
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999885
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=1.6e-12 Score=114.27 Aligned_cols=73 Identities=15% Similarity=0.378 Sum_probs=66.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4679999996 69999999999999999999985 468999999999999999999999999999999998865
Q ss_pred e
Q 006370 407 R 407 (648)
Q Consensus 407 ~ 407 (648)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 4
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.2e-13 Score=110.41 Aligned_cols=74 Identities=27% Similarity=0.495 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~ 228 (648)
..++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5789999999999999999999999999999999754 789999999999999865432 344577888776665
Q ss_pred C
Q 006370 229 D 229 (648)
Q Consensus 229 ~ 229 (648)
+
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 355
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=3.2e-12 Score=112.04 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=65.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcce-EEEEEechhhHHHHHHhcCCCeEee--eccCCCCC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTAPS 227 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~-afV~F~~~e~A~~Al~~l~~~~l~G--~~i~v~~~ 227 (648)
..|||+||++.+|+++|+++|++||.|..|+|+.. .|| |||+|.+.++|.+|++.||+..|.| +.|.|..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999999652 286 9999999999999999999999988 57888877
Q ss_pred CCCC
Q 006370 228 EDND 231 (648)
Q Consensus 228 ~~~~ 231 (648)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6543
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=4.5e-12 Score=110.37 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=69.8
Q ss_pred cceeeeecCCCC--C---CCHHHHHHhhcccCcEEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCeecC
Q 006370 327 HVKTVFLDGVPP--H---WKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (648)
Q Consensus 327 ~~~~l~v~nLp~--~---~t~~~l~~~f~~~G~v~~v~i~~d~~----~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g 397 (648)
.+++|+|.||-. . -.+++|++.|++||.|..|.|+++.. +++++||+||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999843 2 23689999999999999999998864 46788999999999999999999999999999
Q ss_pred CeeEEEEEe
Q 006370 398 GNSKVKLRA 406 (648)
Q Consensus 398 ~~i~v~~~~ 406 (648)
+.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999998863
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3e-12 Score=105.82 Aligned_cols=68 Identities=16% Similarity=0.427 Sum_probs=57.1
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee--cCCeeEEE
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--SDGNSKVK 403 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~--~g~~i~v~ 403 (648)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ +++..+ .++.|.|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 3579999999999999999999999999999999865 68999999999999975 455555 56554444
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=2.5e-12 Score=125.60 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=69.3
Q ss_pred cceeeeecCCCCCC---------CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee--
Q 006370 327 HVKTVFLDGVPPHW---------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF-- 395 (648)
Q Consensus 327 ~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~-- 395 (648)
..++|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+++|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 46799999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ----------cCCeeEEEEEeecCCC
Q 006370 396 ----------SDGNSKVKLRARLSNP 411 (648)
Q Consensus 396 ----------~g~~i~v~~~~~~~~~ 411 (648)
.|+.|.|.|+.....|
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-----
T ss_pred cccccccccCCCCEEEEEEccCCCCH
Confidence 8999999988765444
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=1.9e-12 Score=113.75 Aligned_cols=77 Identities=19% Similarity=0.372 Sum_probs=69.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCC
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~ 225 (648)
.....++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999996 79999999999999999999995 568999999999999999999999999999999987
Q ss_pred CCCCC
Q 006370 226 PSEDN 230 (648)
Q Consensus 226 ~~~~~ 230 (648)
.+...
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 77643
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.9e-12 Score=110.46 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=62.3
Q ss_pred ecCCCCCCCHHHHHHhh------------cccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCee
Q 006370 333 LDGVPPHWKENQIRDQI------------KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (648)
Q Consensus 333 v~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (648)
+.||++.+++++|+++| ++||.|..|.|+++. +++++|||||+|.+.++|.+|+..|||+.|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666555 999999999999885 47899999999999999999999999999999999
Q ss_pred EEEEE
Q 006370 401 KVKLR 405 (648)
Q Consensus 401 ~v~~~ 405 (648)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 88864
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.8e-11 Score=106.01 Aligned_cols=76 Identities=14% Similarity=0.309 Sum_probs=65.6
Q ss_pred cceeeeecCCCCCCC-----------HHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCee
Q 006370 327 HVKTVFLDGVPPHWK-----------ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~ 395 (648)
.+++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+||..|||..|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 467999999954332 5899999999999999966 443 3799999999999999999999999999
Q ss_pred cCCeeEEEEEe
Q 006370 396 SDGNSKVKLRA 406 (648)
Q Consensus 396 ~g~~i~v~~~~ 406 (648)
.|+.|.|.++.
T Consensus 90 ~gr~l~v~~a~ 100 (112)
T 2dit_A 90 GGRQITAQAWD 100 (112)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEeC
Confidence 99999998864
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=5.3e-12 Score=123.27 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=69.7
Q ss_pred cCCCCEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeE
Q 006370 147 IKKEHEIFIGGLDRDA---------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~---------te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l 217 (648)
....++|||+||+..+ |+++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467999999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ------------eeeccCCCCCCCC
Q 006370 218 ------------CGKRCGTAPSEDN 230 (648)
Q Consensus 218 ------------~G~~i~v~~~~~~ 230 (648)
.|+.|.|..+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8888888877643
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.3e-11 Score=106.85 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=70.8
Q ss_pred ccCCCCEEEEcCCCCCC-----------CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCC
Q 006370 146 KIKKEHEIFIGGLDRDA-----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~-----------te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~ 214 (648)
....+++|+|+||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+||..||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44578999999995433 26899999999999999966 443 4799999999999999999999999
Q ss_pred CeEeeeccCCCCCCCCCcc
Q 006370 215 PVICGKRCGTAPSEDNDTL 233 (648)
Q Consensus 215 ~~l~G~~i~v~~~~~~~~L 233 (648)
..|.|+.|.|..+......
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999887654443
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=1.3e-11 Score=105.29 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=68.9
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEEecCCC--CCCcceEEEEEechhhHHHHHHhcCCCe
Q 006370 149 KEHEIFIGGL--DRDAT--------QEDVRKVFERIGEVIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPV 216 (648)
Q Consensus 149 ~~~tlfV~nL--p~~~t--------e~dL~~~F~~~G~v~~v~i~~d~~t--g~~kG~afV~F~~~e~A~~Al~~l~~~~ 216 (648)
+++.|.|.|+ |.++. +++|++.|++||.|++|+|+++..+ ++++|+|||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6789999998 33443 4789999999999999999988765 4689999999999999999999999999
Q ss_pred EeeeccCCCCC
Q 006370 217 ICGKRCGTAPS 227 (648)
Q Consensus 217 l~G~~i~v~~~ 227 (648)
+.|+.|.|...
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999887654
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=2.9e-11 Score=105.24 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEEecCC----CCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 149 KEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 149 ~~~tlfV~nLp~-----~~te~dL~~~F~~~G~v~~v~i~~d~~----tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
++++|+|.||-. +-.+++|++.|++||.|++|+|+++.. +++++|++||+|.+.++|.+|++.||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999952 224789999999999999999999865 45788999999999999999999999999999
Q ss_pred eccCCCCC
Q 006370 220 KRCGTAPS 227 (648)
Q Consensus 220 ~~i~v~~~ 227 (648)
+.|.|...
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99877654
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=8e-12 Score=106.52 Aligned_cols=72 Identities=25% Similarity=0.443 Sum_probs=60.7
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeecc
Q 006370 155 IGGLDRDATQEDVRKVF------------ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (648)
Q Consensus 155 V~nLp~~~te~dL~~~F------------~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i 222 (648)
+.||++.+|+++|+++| ++||.|+.|.|+++. +++++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666676666555 999999999999875 47899999999999999999999999999999999
Q ss_pred CCCCC
Q 006370 223 GTAPS 227 (648)
Q Consensus 223 ~v~~~ 227 (648)
.|..+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 87543
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.8e-10 Score=96.93 Aligned_cols=62 Identities=19% Similarity=0.370 Sum_probs=54.5
Q ss_pred CCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 338 ~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
..+|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.++.|+|.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 468999999999999999999997 35799999999999999999987554 679998887753
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=1.8e-10 Score=99.56 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=64.6
Q ss_pred cceeeeecCCCCCC----------CHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec
Q 006370 327 HVKTVFLDGVPPHW----------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (648)
Q Consensus 327 ~~~~l~v~nLp~~~----------t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~ 396 (648)
.+++|.|.|+-... .+++|++.|++||.|..|.|.++. ++|||||+|.+.++|.+|+..|||+.|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35678888884321 236899999999999999997663 5899999999999999999999999999
Q ss_pred CCeeEEEEEe
Q 006370 397 DGNSKVKLRA 406 (648)
Q Consensus 397 g~~i~v~~~~ 406 (648)
|+.|.|.+..
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999864
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=6.4e-10 Score=93.59 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=61.6
Q ss_pred CCCEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeec
Q 006370 149 KEHEIFIGGLD-------RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (648)
Q Consensus 149 ~~~tlfV~nLp-------~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~ 221 (648)
...+|.|.-.. ..+|+++|+++|++||.|+.|.|+ ++++|||||+|.+.++|.+||+.+++ +.+++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 35677777665 458999999999999999999997 47899999999999999999998554 56888
Q ss_pred cCCCCCCC
Q 006370 222 CGTAPSED 229 (648)
Q Consensus 222 i~v~~~~~ 229 (648)
|.|..+..
T Consensus 82 l~V~~a~~ 89 (100)
T 2d9o_A 82 LKISWLEG 89 (100)
T ss_dssp CEEECSSC
T ss_pred EEEEEccC
Confidence 88776654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=3.3e-10 Score=116.62 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=58.1
Q ss_pred cceeeeecC--CCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeec
Q 006370 327 HVKTVFLDG--VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (648)
Q Consensus 327 ~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~ 396 (648)
.+++|||+| |++.+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|++||+.|||+.+.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 457999999 578999999999999999999988753 4799999999999999999999999984
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=5.3e-10 Score=115.11 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=59.6
Q ss_pred cCCCCEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 147 IKKEHEIFIGG--LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 147 ~~~~~tlfV~n--Lp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
..++++|||+| |++.+|+++|+++|++||+|..|.|.. +||||||+|.+.++|++|++.||+..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 44789999999 588999999999999999999987743 5899999999999999999999999884
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.4e-09 Score=92.45 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred cceeeeecCCCCC-CCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCeecCCeeEE
Q 006370 327 HVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACINAIN--NKEFSDGNSKV 402 (648)
Q Consensus 327 ~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~-~~~A~~Ai~~ln--g~~~~g~~i~v 402 (648)
....|+|+||+.. ++.++|+++|++||.|.+|.++++.. +|||+|.+ ..+|..|+.+|| +..|.+..+++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4679999999999 99999999999999999999988854 59999999 899999999995 78888988777
Q ss_pred EE
Q 006370 403 KL 404 (648)
Q Consensus 403 ~~ 404 (648)
++
T Consensus 91 ev 92 (121)
T 1owx_A 91 EV 92 (121)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=2.4e-09 Score=92.40 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 149 KEHEIFIGGLDRDA----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 149 ~~~tlfV~nLp~~~----------te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
.++.|.|.|+=... .+++|++.|++||.|++|.|.++ .++|+|||+|.+.++|.+|++.||+..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57889999986432 24588999999999999999765 25999999999999999999999999999
Q ss_pred eeccCCCCC
Q 006370 219 GKRCGTAPS 227 (648)
Q Consensus 219 G~~i~v~~~ 227 (648)
|+.|.|..+
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999877654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.2e-08 Score=82.42 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=51.0
Q ss_pred HHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEEe
Q 006370 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (648)
Q Consensus 343 ~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (648)
.+|.+.|.+||.|+.++|+.+. +||+|.+.++|.+||+ |||..+.|+.|+|.++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 6799999999999999998873 8999999999999998 99999999999998864
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=9.3e-09 Score=88.81 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=59.4
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEec-hhhHHHHHHhcC--CCeEeeec
Q 006370 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN-KEHAKRALTEMK--NPVICGKR 221 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~-~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~-~e~A~~Al~~l~--~~~l~G~~ 221 (648)
....+.|+|+||+.+ ++.++|+++|++||+|..|.++++.. +|||.|.+ ..+|..|+..|+ +..|.+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 457899999999999 99999999999999999999988744 59999999 899999999985 44555543
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.63 E-value=5.6e-08 Score=94.82 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=60.2
Q ss_pred CCCHHHHHHhhcccCcEEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 339 HWKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 339 ~~t~~~l~~~f~~~G~v~~v~i~~d~~----~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.-.+++|++.|++||.|..|.|+++.. +++++|++||+|.+.++|.+|+..|||+.|.|+.|.|.+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 345689999999999999999986543 4589999999999999999999999999999999999874
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=5.1e-08 Score=78.75 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 149 KEHEIFIGGLDR----DATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 149 ~~~tlfV~nLp~----~~te----~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
+..||+|.-++. .+-. .+|.+.|++||.|..|+|+.++ +||+|.+.++|.+||+ ||+..+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 456888887762 3333 5789999999999999998873 8999999999999998 999999999
Q ss_pred ccCCCCCC
Q 006370 221 RCGTAPSE 228 (648)
Q Consensus 221 ~i~v~~~~ 228 (648)
.|+|..+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99887664
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=3e-08 Score=80.41 Aligned_cols=68 Identities=12% Similarity=0.288 Sum_probs=57.5
Q ss_pred eeeeecCCCCC-----CCH----HHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 006370 329 KTVFLDGVPPH-----WKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (648)
Q Consensus 329 ~~l~v~nLp~~-----~t~----~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (648)
.+|+|.-++.. +.. .+|.+.|.+||.|+.++|+.++ +||+|.+.++|.+||+ |||..|.|+.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 47777766532 222 5699999999999999998883 9999999999999998 9999999999
Q ss_pred eEEEEE
Q 006370 400 SKVKLR 405 (648)
Q Consensus 400 i~v~~~ 405 (648)
|+|.++
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988764
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.5e-07 Score=76.29 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=60.1
Q ss_pred CCCCEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEe
Q 006370 148 KKEHEIFIGGLDRD-----ATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (648)
Q Consensus 148 ~~~~tlfV~nLp~~-----~te----~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~ 218 (648)
.+..||+|.-++.. +-. .+|.+.|.+||.|..|+|+.++ +||+|.+.++|.+||+ |++..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 46679999988632 222 4688999999999999999873 9999999999999998 9999999
Q ss_pred eeccCCCCC
Q 006370 219 GKRCGTAPS 227 (648)
Q Consensus 219 G~~i~v~~~ 227 (648)
|+.|+|...
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999987643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.34 E-value=9e-07 Score=86.16 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEEecCC----CCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 149 KEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 149 ~~~tlfV~nLp~-----~~te~dL~~~F~~~G~v~~v~i~~d~~----tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
....+.+.|+-. +-.+++|.+.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..||+..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 455666666642 345778999999999999999996644 45899999999999999999999999999999
Q ss_pred eccCCCCC
Q 006370 220 KRCGTAPS 227 (648)
Q Consensus 220 ~~i~v~~~ 227 (648)
+.|.+...
T Consensus 203 r~i~~~~~ 210 (222)
T 3dxb_A 203 RKVVAEVY 210 (222)
T ss_dssp SBCEEEEC
T ss_pred eEEEEEEc
Confidence 99877654
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.5e-06 Score=70.43 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred ceeeeecCCCCCCCHHHHHHhhccc-----CcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
.++|-|-|||..+++..|+.+.+++ |.|+.|.+..|. +-|+|+|.+...|.+|..+|||.+|.|+.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 3688899999999999999999999 999999998884 34999999999999999999999999999888
Q ss_pred E
Q 006370 403 K 403 (648)
Q Consensus 403 ~ 403 (648)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.1e-05 Score=65.00 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=65.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 146 KIKKEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 146 ~~~~~~tlfV~nLp~~~te~dL~~~F~~~-----G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
.....++|-|-|||..++...|+.|.+++ |.|+.|.+..|. +=|+|+|.+...|-+|.-.|++..|.|+
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCe
Confidence 34467999999999999999999999999 999999998773 3599999999999999989999999999
Q ss_pred ccCC
Q 006370 221 RCGT 224 (648)
Q Consensus 221 ~i~v 224 (648)
+|++
T Consensus 91 ~Lr~ 94 (117)
T 2l9w_A 91 VIRS 94 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00027 Score=58.00 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFER-----IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~-----~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~ 223 (648)
..++|.|.|||..+.++.|.-+|+. =|+|..|.... +.|+|+|.+.+.|++.|+. ....|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4689999999999999999999987 24898888743 4699999999999999985 35567777777
Q ss_pred CCC--CCCCCcceecccCCCCc
Q 006370 224 TAP--SEDNDTLFVGNICNTWT 243 (648)
Q Consensus 224 v~~--~~~~~~L~V~nLp~~~t 243 (648)
|.+ ..+..+|++.+|+..++
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 654 45678999999998764
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.004 Score=51.07 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=67.9
Q ss_pred CCCcceecccCCCCcHHHHHHHHhh---cCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhCCCCeeeCCC
Q 006370 229 DNDTLFVGNICNTWTKEAIKQKLKD---YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (648)
Q Consensus 229 ~~~~L~V~nLp~~~t~e~l~~~f~~---~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~~~~~~~g~~ 305 (648)
...+|.|.|||..+.++.|.-+|+. .|-..|..+.... +-|+|+|.+...|+.++++ ....+ .
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k-~~H~L----~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ-ADHEL----H 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC-SCCBS----S
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC-Cccee----c
Confidence 4578999999999999999999998 4555588888754 3589999999999999874 12223 3
Q ss_pred CcceeeeccCCCCCCCccccccceeeeecCCCCCCC
Q 006370 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 341 (648)
Q Consensus 306 ~~~l~v~~a~~~~~~~~~~~~~~~~l~v~nLp~~~t 341 (648)
+..|.|.-..+. ...+|++++|+..++
T Consensus 73 ~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 73 GAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp SSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred CeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 566666543332 346899999998775
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0011 Score=54.64 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=61.0
Q ss_pred ceeeeecCCCCCC-C----HHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEE
Q 006370 328 VKTVFLDGVPPHW-K----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (648)
Q Consensus 328 ~~~l~v~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (648)
.++|+|.||+..+ . .+.++++|.+|+.+....+.+.. .-..|.|.+.++|.+|-..|++..|.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998765 2 25788999999988777776553 24799999999999999999999999999999
Q ss_pred EEEe
Q 006370 403 KLRA 406 (648)
Q Consensus 403 ~~~~ 406 (648)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8865
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.66 E-value=0.0077 Score=48.78 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=57.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCC--CcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR--NKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~--~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
..|.|++||+.+|++++.+.+..+..+.....+..+.+.. .-.-|||.|.+.+++....+.+++..+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999998887777765543322 345699999999999999999999887644
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.63 E-value=0.0071 Score=48.98 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=58.3
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA--KRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~--~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
++|.|++||+.+|++++.+.+.....+.....+..+.+. ..-.-|+|.|.+.+++......++|+.|-+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 478999999999999999999999888777766554322 2345799999999999999999999988765
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.61 E-value=0.0027 Score=52.38 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCC
Q 006370 150 EHEIFIGGLDRDA-T----QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (648)
Q Consensus 150 ~~tlfV~nLp~~~-t----e~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v 224 (648)
.++|+|.||+.++ + .+.++++|.+|+++......+. -.-..|.|.+.++|.+|...|++..+.|+.|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998755 2 2578999999999888777654 335899999999999999999999999998876
Q ss_pred CCCC
Q 006370 225 APSE 228 (648)
Q Consensus 225 ~~~~ 228 (648)
-.+.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 5443
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.13 E-value=0.008 Score=48.69 Aligned_cols=55 Identities=16% Similarity=0.407 Sum_probs=45.1
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (648)
...++| ++|..+...||.++|+.||.|. |.++.|. -|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 356777 9999999999999999998443 5555552 59999999999999998764
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0068 Score=49.27 Aligned_cols=55 Identities=18% Similarity=0.432 Sum_probs=45.9
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (648)
...++| ++|..+...||.++|+.||. ..|.++.|. -|||.|.+++.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456777 99999999999999999983 446666553 59999999999999998775
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.022 Score=48.30 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=52.8
Q ss_pred cceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCe
Q 006370 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (648)
Q Consensus 327 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (648)
..+.|.|-+.|... ...|..+|++||.|+...... ...+..|.|.+..+|++||. .||..|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 35678888998875 677889999999999888621 24589999999999999997 6999987643
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.92 E-value=0.017 Score=46.95 Aligned_cols=54 Identities=22% Similarity=0.443 Sum_probs=44.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC
Q 006370 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (648)
Q Consensus 151 ~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (648)
+.++| ++|..+.-.||..+|+.||.| .|.-+-| | .|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999943 4555444 2 69999999999999999764
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.85 E-value=0.014 Score=47.27 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=46.6
Q ss_pred CCcceecccCCCCcHHHHHHHHhhcCCcceEEEEEeecccCCCCcceEEEEEecCHHHHHHHHHHhC
Q 006370 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (648)
Q Consensus 230 ~~~L~V~nLp~~~t~e~l~~~f~~~G~~~i~~i~i~~d~~~~g~srG~afV~f~~~~~A~~A~~~l~ 296 (648)
.+.++| .+|.++...+|.++|+.|| -..|+.+.| ..|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg---gv~I~WidD--------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDD--------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC---SCCCEEEET--------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC---CEEEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence 344556 9999999999999999998 446677776 479999999999999999875
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.33 E-value=0.048 Score=46.25 Aligned_cols=63 Identities=11% Similarity=0.294 Sum_probs=52.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEee
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G 219 (648)
..+.|.|-+.|... -..|..+|++||.|++.... ....+-.|+|.+..+|++||. .|+..|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 46799999999986 55788999999999988762 235789999999999999998 48888764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.79 E-value=0.007 Score=64.30 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=47.8
Q ss_pred hhhhccCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHh
Q 006370 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (648)
Q Consensus 142 ~~~~~~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~ 211 (648)
...+.....++|||. .|..+++.+|.++|++||+|..+.+..+. .-||.|+|.+.+++..++..
T Consensus 45 ~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 45 QNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred HHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 334444467899998 79999999999999999999999987653 36999999999999988764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.33 E-value=0.045 Score=44.59 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCC--CCcceEEEEEechhhHHHHHHhcCCCeEeee
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg--~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~ 220 (648)
.+-.|.|+.||+.+|++++.+.+..+-++.....+....+. ..-.-|||.|.+.+++....+..++..+...
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45689999999999999988887776554333332222221 1234599999999999999999998877654
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.15 E-value=0.059 Score=43.88 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=52.9
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCeecCC
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA--KRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~--~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~ 398 (648)
+-+|.|+.||+.+|++++.+.+...-.+.+...+....+. ..-..|+|.|.+.+++......++|..|-+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 4589999999999999988888776555443333222221 1234589999999999999999999988764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.08 E-value=0.13 Score=44.25 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=51.1
Q ss_pred eeeeecCCCCCCCHHHHHHhhcccCcEEEE-EEeecC------------CCC-CcccEEEEEeCCHHHHHHHHHHhCCCe
Q 006370 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNM------------STA-KRKDYGFIDFSTHEAAVACINAINNKE 394 (648)
Q Consensus 329 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~d~------------~~~-~~~G~afV~F~~~~~A~~Ai~~lng~~ 394 (648)
..|.|-+.|...++ .|.+.|++||.|..- .+.+.. ... ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 46777788766554 566899999998652 211100 000 135688999999999999996 69999
Q ss_pred ecCCeeEEEE
Q 006370 395 FSDGNSKVKL 404 (648)
Q Consensus 395 ~~g~~i~v~~ 404 (648)
|.|..|=|..
T Consensus 86 i~G~mIGV~P 95 (132)
T 3p3d_A 86 FNGVLLGVIP 95 (132)
T ss_dssp ETTEECEEEE
T ss_pred eCcEEEEEEE
Confidence 9996555543
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.87 E-value=0.08 Score=45.48 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-EEec--------CCCC-----CCcceEEEEEechhhHHHHHHhcCC
Q 006370 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR-LHKN--------FSTN-----RNKGYAFVKFANKEHAKRALTEMKN 214 (648)
Q Consensus 149 ~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~-i~~d--------~~tg-----~~kG~afV~F~~~e~A~~Al~~l~~ 214 (648)
....|.|-+.|...+. .|-.+|++||.|.+-. +... +.+. .......|+|.+..+|.+||. .|+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888889776654 6888999999986621 1110 0000 135677999999999999998 589
Q ss_pred CeEeeeccCCC
Q 006370 215 PVICGKRCGTA 225 (648)
Q Consensus 215 ~~l~G~~i~v~ 225 (648)
.+|.|.-|-|.
T Consensus 84 ~ii~G~mIGV~ 94 (132)
T 3p3d_A 84 AVFNGVLLGVI 94 (132)
T ss_dssp CEETTEECEEE
T ss_pred eEeCcEEEEEE
Confidence 99888644433
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.34 E-value=0.11 Score=55.12 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=41.1
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~ 388 (648)
.++|+|. .|..+++.+|.++|++||.|..+.+..+. .-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 3578997 78899999999999999999999887652 3599999999999887654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.36 E-value=6.2 Score=42.51 Aligned_cols=55 Identities=16% Similarity=0.438 Sum_probs=44.4
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (648)
...++|+ +|..+...+|.+.|+.||.| .|.++-+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566776 88899999999999999954 4555443 259999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.41 E-value=6.3 Score=42.46 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcC
Q 006370 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (648)
Q Consensus 150 ~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~ 213 (648)
...++|+ +|..+...+|.++|+.||.| .|+.+-+ ..|||.|.+.+.|..+|+.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 89999999999999999955 5554332 369999999999999999875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.46 E-value=89 Score=24.35 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=45.7
Q ss_pred ceeeeecCCCCCCCHHHHHHhhcccCcEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 006370 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (648)
Q Consensus 328 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~ln 391 (648)
.+-+.|-|+|..+-..++.-.....|---.|..+ .|.|.|.|.+.++..-||.+|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 3567889999999998888888888876677764 3469999999999999998873
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=43.12 E-value=1.1e+02 Score=23.77 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=48.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhc
Q 006370 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (648)
Q Consensus 147 ~~~~~tlfV~nLp~~~te~dL~~~F~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l 212 (648)
....+-|-|-|||..+-..++.-.....|---.|..+ .|.|.|.|.+.++...|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 4467889999999999999998888888866667654 356999999999999999875
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=29.74 E-value=1e+02 Score=22.99 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCHHHHHHhhcccC-----cEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCCeecCCeeEEEEE
Q 006370 339 HWKENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (648)
Q Consensus 339 ~~t~~~l~~~f~~~G-----~v~~v~i~~d~~~~~~~G~afV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (648)
.+...+|..++..-+ .|-.|.|..+ |.||+-... .|..++..|++..+.|+.+.|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 355666666665443 4667777444 688887654 467788899999999999877653
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.46 E-value=2e+02 Score=22.61 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=36.2
Q ss_pred eEEEEEEecCCCCCCcceEEEEEechhhHHHHHHhcCCCeEeeeccCCCCCCCCCcceecccCCCCcHHHHHHHHh
Q 006370 177 VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLK 252 (648)
Q Consensus 177 v~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Al~~l~~~~l~G~~i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~ 252 (648)
|.+|.+.. ...||.||++...++...++..+.+. +-||++ .++.+++..++.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV----------------~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV----------------RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE----------------EEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc----------------eEeCCC---CCCHHHHHHHhC
Confidence 55666543 37999999999998888888765542 224444 677788777664
No 407
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=26.54 E-value=22 Score=39.09 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=3.6
Q ss_pred HHHHHhhc
Q 006370 166 DVRKVFER 173 (648)
Q Consensus 166 dL~~~F~~ 173 (648)
.|..+|..
T Consensus 385 ~Ll~~F~~ 392 (649)
T 3tj1_A 385 TLTTLFKT 392 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444544
No 408
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.66 E-value=17 Score=37.12 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=9.1
Q ss_pred CCCHHHHHHhhccc
Q 006370 339 HWKENQIRDQIKGY 352 (648)
Q Consensus 339 ~~t~~~l~~~f~~~ 352 (648)
.+|+++|+++....
T Consensus 228 ~vt~~~l~~i~~~i 241 (358)
T 2pk2_A 228 TVTLELLDELTHEF 241 (358)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 45777777776543
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.39 E-value=1.3e+02 Score=26.98 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=37.0
Q ss_pred CEEEEcCCCC-C--------CCHHHHHHHh--hccCCeEEEEEEecCCCCCCcceEEEEEechhhHH
Q 006370 151 HEIFIGGLDR-D--------ATQEDVRKVF--ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAK 206 (648)
Q Consensus 151 ~tlfV~nLp~-~--------~te~dL~~~F--~~~G~v~~v~i~~d~~tg~~kG~afV~F~~~e~A~ 206 (648)
-++.|-|+|. . .....|++.| +.|.++. |+.+.++ .-+.|+|.|.|.+.-..-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf 76 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGL 76 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHH
Confidence 4677888887 2 3457899977 9999876 4444443 347899999998655443
No 410
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=20.04 E-value=2.2e+02 Score=21.63 Aligned_cols=59 Identities=7% Similarity=0.071 Sum_probs=41.7
Q ss_pred eEEEEEechhhHHHHHHh---cCCCeEeeeccCCCCCCCCCcceecccCCCCcHHHHHHHHhhc
Q 006370 194 YAFVKFANKEHAKRALTE---MKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDY 254 (648)
Q Consensus 194 ~afV~F~~~e~A~~Al~~---l~~~~l~G~~i~v~~~~~~~~L~V~nLp~~~t~e~l~~~f~~~ 254 (648)
|.++.|....++.+-|+. ++..+|.-..+++.....-.++|| |.++++++++....++|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 788999877666666653 677787776666666665566776 55677888887777665
Done!