Query 006371
Match_columns 648
No_of_seqs 137 out of 752
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 23:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 97.1 0.02 6.8E-07 62.2 19.4 103 138-245 130-240 (511)
2 3gia_A Uncharacterized protein 96.7 0.024 8.1E-07 60.5 15.8 259 111-390 97-373 (444)
3 3l1l_A Arginine/agmatine antip 96.1 0.05 1.7E-06 57.8 13.4 107 114-228 100-211 (445)
4 2bm3_A Type 2 cohesin, scaffol 17.1 35 0.0012 32.2 0.6 12 185-196 44-55 (166)
5 3rhw_A Avermectin-sensitive gl 17.0 2.2E+02 0.0074 29.3 6.8 62 315-380 198-263 (347)
6 3kcp_B Cellulosome anchoring p 16.8 36 0.0012 32.6 0.6 13 185-197 56-68 (187)
7 2rdd_B UPF0092 membrane protei 15.4 2.2E+02 0.0076 20.0 4.4 18 418-435 1-18 (37)
8 2jln_A MHP1; hydantoin, transp 15.1 5.1E+02 0.017 28.0 9.5 33 226-258 225-272 (501)
9 1nrp_R Receptor based peptide 13.6 65 0.0022 20.9 1.0 17 259-275 4-20 (26)
10 3bkd_A Transmembrane domain of 12.5 81 0.0028 20.8 1.2 13 10-22 10-22 (26)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.11 E-value=0.02 Score=62.23 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred eehhHHHHHHHHHHHhhccccccccchhhH----HHHHHHHHHHHHHHHhhccCcceeeecCHHHHHHHHhhc--Cchhh
Q 006371 138 VEALSAIILIVLFLMQKFGTSRVSFLFSPI----MGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRK--GKEGW 211 (648)
Q Consensus 138 vv~is~~Il~~LF~~Q~~GT~~ig~~FgPi----m~~WF~~l~~~G~~~i~~~~p~Vl~AlnP~ya~~f~~~~--~~~~~ 211 (648)
...+++++++++..+.-+|.+..+++..-. +++-++.+.++|+..+...+|.-++ .|+ +.+..+ +..+|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MDS----KTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Ccc----cccCCCcccchHH
Confidence 456788888888999999998887754322 2223444556677665543332111 111 111111 12345
Q ss_pred hhhcceeeeecchhhhhhccCCCC--ccchhhhHHH
Q 006371 212 LLLGGTVLCITGSEALFADLGHFN--RSSIQMAFLF 245 (648)
Q Consensus 212 ~~LG~v~L~iTG~EALyADmGHfg--~~~I~~sw~~ 245 (648)
..+..++.+.+|-|+.-.=-+-.- +|++..+-..
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 667778899999998644333333 4566665553
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.74 E-value=0.024 Score=60.47 Aligned_cols=259 Identities=12% Similarity=0.071 Sum_probs=115.3
Q ss_pred ccccchhhHhhhhcccccCCCCCCCc-eeehhHHHHHHHHHHHhhccccccccc---hhhHHHHHHHHHHHHHHHHhhcc
Q 006371 111 GILTPAISVLSAMDGIRAPFPSVSKS-LVEALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHH 186 (648)
Q Consensus 111 gviTPAiSVlSAveGl~~~~p~~~~~-~vv~is~~Il~~LF~~Q~~GT~~ig~~---FgPim~~WF~~l~~~G~~~i~~~ 186 (648)
-+++.|....+..+-+.-..|...++ +...+++++++.+..+..+|.+..+++ +..+.++=++.+.+.|+...
T Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~--- 173 (444)
T 3gia_A 97 YVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI--- 173 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 34455555555554444333332221 234567888888889999998877764 44444444444445555543
Q ss_pred Ccceeee-cCHHHHHHHHhhcCchh-hhhhcceeeeecchhhhhhccCCCC--ccchhhhHHHHHHHHHHHhhcc-hhhH
Q 006371 187 YPGIFKA-LSPHYTFHFFWRKGKEG-WLLLGGTVLCITGSEALFADLGHFN--RSSIQMAFLFTIYPSLVLTYAG-QTAY 261 (648)
Q Consensus 187 ~p~Vl~A-lnP~ya~~f~~~~~~~~-~~~LG~v~L~iTG~EALyADmGHfg--~~~I~~sw~~~V~P~L~lnY~G-QgA~ 261 (648)
+|+-+.. ++|. +..+ +..+...+.+.+|-|+.-.=-+... +|++..+-..-+.-+.+ -|+. .-+.
T Consensus 174 ~~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~-~y~~~~~~~ 243 (444)
T 3gia_A 174 HPSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMF-VYVGVAISA 243 (444)
T ss_dssp CGGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred ChhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHH-HHHHHHHHH
Confidence 3443222 2221 1111 2334446778899997633222222 23344443321111111 1221 1111
Q ss_pred hhcCC-Cc----cccccccc----ccccchHHHHHHHHHHHHHHHhHhhhhhhhHHHHHHhcCCCccceEEecCCCCCCc
Q 006371 262 LIRHP-ND----HEDGFYKF----IPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTSSNKEGE 332 (648)
Q Consensus 262 ll~~p-~~----~~npFf~~----~P~~~~~p~~ilAtlAtiIASQA~Isg~FSl~~Qai~L~~~Pr~~i~hTS~~~~GQ 332 (648)
+..-| ++ ..+|+-.. .+++..+.+.+.+.++..-+.-+.+.++=-+....-+-|.+||.= .+++ ++.
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f-~~~~---~~~ 319 (444)
T 3gia_A 244 IGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFF-ERKV---WFK 319 (444)
T ss_dssp HTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSC-CTTS---CCS
T ss_pred HhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-hCCC---CCC
Confidence 11111 11 12333221 223333323232223332223333333333455556789999631 1222 222
Q ss_pred ccchhhHHHHHHHhheeeEEeCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Q 006371 333 VYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTLVMIVIWRTPS 390 (648)
Q Consensus 333 iYiP~vNw~L~i~~i~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~ 390 (648)
|...-++......+...+-+-+.+.+.++++...+..++.+- .+..|+.+++++
T Consensus 320 ---P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~ 373 (444)
T 3gia_A 320 ---STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILS-HYILIDEVGGRK 373 (444)
T ss_dssp ---CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHCCCH
T ss_pred ---CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCcc
Confidence 553332222222222223466777777777766666554443 233444333333
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.09 E-value=0.05 Score=57.85 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=50.8
Q ss_pred cchhhHhhhhcccccCCCCCCCce-eehhHHHHHHHHHHHhhccccccccc---hhhHHHHHHHHHHHHHHHHhhccCcc
Q 006371 114 TPAISVLSAMDGIRAPFPSVSKSL-VEALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHHYPG 189 (648)
Q Consensus 114 TPAiSVlSAveGl~~~~p~~~~~~-vv~is~~Il~~LF~~Q~~GT~~ig~~---FgPim~~WF~~l~~~G~~~i~~~~p~ 189 (648)
+.+....+..+=++...|...+++ ...+++++++++..+..+|.+..+++ +.++.++=++.+.+. .+...+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~---~~~~~~~~ 176 (445)
T 3l1l_A 100 GNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVF---GWFWFRGE 176 (445)
T ss_dssp HHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT---TSTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhChh
Confidence 333344444444444445432221 23467777777888888998888775 333333222222333 33333455
Q ss_pred ee-eecCHHHHHHHHhhcCchhhhhhcceeeeecchhhhh
Q 006371 190 IF-KALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALF 228 (648)
Q Consensus 190 Vl-~AlnP~ya~~f~~~~~~~~~~~LG~v~L~iTG~EALy 228 (648)
.+ ..++|.-.- ....-+..+..++.+.+|-|+.-
T Consensus 177 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 177 TYMAAWNVSGLG-----TFGAIQSTLNVTLWSFIGVESAS 211 (445)
T ss_dssp CCCCC----------------HHHHHHHHHHTTTTTTHHH
T ss_pred hcccccCccCCc-----cHHHHHHHHHHHHHHHHhHHHHH
Confidence 43 344443110 01111334555677788988653
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=17.05 E-value=35 Score=32.24 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=8.2
Q ss_pred ccCcceeeecCH
Q 006371 185 HHYPGIFKALSP 196 (648)
Q Consensus 185 ~~~p~Vl~AlnP 196 (648)
+|||+||+|+||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 467777777776
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=17.00 E-value=2.2e+02 Score=29.27 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCCccceEEecCCCCCC----cccchhhHHHHHHHhheeeEEeCCchhhhhhhhhHHHHHHHHHHHHHHH
Q 006371 315 DYFPRVKVVHTSSNKEG----EVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTL 380 (648)
Q Consensus 315 ~~~Pr~~i~hTS~~~~G----QiYiP~vNw~L~i~~i~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~ 380 (648)
|.+|++...-+=++..| |+|+|.+ ++.++..+..+=+.++.+.==++++|..+.+|+++..+
T Consensus 198 ~~y~~l~~~~~l~R~~~~y~~~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 198 GIYSCLRTTIQLKREFSFYLLQLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp CEECEEEEEEEEEECSHHHHHHTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEEEEEEeeEEEEEeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 44555555444444333 7899986 33333444444444444344467888777777777554
No 6
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=16.76 E-value=36 Score=32.62 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=7.9
Q ss_pred ccCcceeeecCHH
Q 006371 185 HHYPGIFKALSPH 197 (648)
Q Consensus 185 ~~~p~Vl~AlnP~ 197 (648)
+|||+||+|+||.
T Consensus 56 KYDP~VLqaV~p~ 68 (187)
T 3kcp_B 56 VYDPKVLMAVDPE 68 (187)
T ss_dssp ECCTTTEEEECTT
T ss_pred eEChhHeeecccC
Confidence 3566666666664
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.37 E-value=2.2e+02 Score=19.99 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=9.3
Q ss_pred CcchHHHHHHHHHHhhhh
Q 006371 418 GGWIPFAISFFLAFIMFG 435 (648)
Q Consensus 418 Ggw~pl~ia~~~~~im~~ 435 (648)
|||..++.-++++.+||.
T Consensus 1 ~~~~~~l~~v~~~~ifYF 18 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYF 18 (37)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 455555554555555543
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=15.11 E-value=5.1e+02 Score=27.99 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=20.3
Q ss_pred hhhhccCCCCccchh------------h---hHHHHHHHHHHHhhcch
Q 006371 226 ALFADLGHFNRSSIQ------------M---AFLFTIYPSLVLTYAGQ 258 (648)
Q Consensus 226 ALyADmGHfg~~~I~------------~---sw~~~V~P~L~lnY~GQ 258 (648)
..-+|...+.|++-. . +++....|..+..-+|=
T Consensus 225 ~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~ 272 (501)
T 2jln_A 225 VSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGA 272 (501)
T ss_dssp TTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999876644 2 33345566666555554
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=13.63 E-value=65 Score=20.87 Aligned_cols=17 Identities=35% Similarity=0.903 Sum_probs=14.4
Q ss_pred hhHhhcCCCcccccccc
Q 006371 259 TAYLIRHPNDHEDGFYK 275 (648)
Q Consensus 259 gA~ll~~p~~~~npFf~ 275 (648)
-+++++||++--.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36789999999999985
No 10
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=12.45 E-value=81 Score=20.75 Aligned_cols=13 Identities=31% Similarity=0.971 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHH
Q 006371 10 DYLGIYSIMFWTL 22 (648)
Q Consensus 10 ~i~G~lSlIfWtL 22 (648)
+|+|++-||.|-+
T Consensus 10 ~iiGilHLiLwIl 22 (26)
T 3bkd_A 10 SIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Done!