Query 006371
Match_columns 648
No_of_seqs 137 out of 752
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 23:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006371.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006371hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 18.3 34 0.0025 30.3 3.2 119 249-380 12-132 (173)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 17.5 35 0.0025 24.9 2.5 42 247-290 13-54 (57)
3 d2bm3a1 b.2.2.2 (A:5-166) Scaf 13.1 24 0.0018 31.0 0.6 12 186-197 41-52 (162)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 12.1 58 0.0042 19.8 2.0 20 419-438 5-24 (27)
5 d1jb0i_ f.23.17.1 (I:) Subunit 7.5 13 0.00093 25.0 -2.6 21 333-353 13-33 (38)
6 d1ppjd2 f.23.11.1 (D:196-241) 6.5 2.3E+02 0.017 19.4 3.7 25 363-387 9-33 (46)
7 d1vlfn1 b.3.5.1 (N:196-274) Tr 5.8 2.3E+02 0.017 21.0 3.7 28 515-543 34-62 (79)
8 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.7 61 0.0044 23.7 0.1 15 38-52 38-52 (71)
9 d1tdpa_ a.29.8.1 (A:) Carnobac 5.0 34 0.0024 27.8 -2.0 67 540-623 16-82 (111)
10 d2a65a1 f.54.1.1 (A:5-513) Na( 4.4 5.6E+02 0.041 24.9 6.8 86 365-450 347-435 (509)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=18.34 E-value=34 Score=30.29 Aligned_cols=119 Identities=10% Similarity=0.070 Sum_probs=69.7
Q ss_pred HHHHHhhcch--hhHhhcCCCcccccccccccccchHHHHHHHHHHHHHHHhHhhhhhhhHHHHHHhcCCCccceEEecC
Q 006371 249 PSLVLTYAGQ--TAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTS 326 (648)
Q Consensus 249 P~L~lnY~GQ--gA~ll~~p~~~~npFf~~~P~~~~~p~~ilAtlAtiIASQA~Isg~FSl~~Qai~L~~~Pr~~i~hTS 326 (648)
|-|++|.+|+ .|+++++-|+.-+-+-.+ ..+.|+ ++-++.-.+||+. +++-|++.+|-.-+-...
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~L---a~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~~~--- 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTAL---AFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRDWR--- 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTSC---CCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSSHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchhHH---
Confidence 4445555554 466666545443321111 255665 5668888999985 588899998854321111
Q ss_pred CCCCCcccchhhHHHHHHHhheeeEEeCCchhhhhhhhhHHHHHHHHHHHHHHH
Q 006371 327 SNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTL 380 (648)
Q Consensus 327 ~~~~GQiYiP~vNw~L~i~~i~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~ 380 (648)
+....++.+-.+|=+.+...+.....+++...++.+=|++....|++.+++=..
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111344677777776666555555556666666666666666666666655443
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.55 E-value=35 Score=24.92 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHHhhcchhhHhhcCCCcccccccccccccchHHHHHHHH
Q 006371 247 IYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIAT 290 (648)
Q Consensus 247 V~P~L~lnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~ilAt 290 (648)
++-++++--++=+.|+..++...+ -|.++|+.++|-.+-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~~~~--~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGAPGA--QLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTC--CCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc--cccccchhhhhheeeeec
Confidence 344444445566677777655333 499999999998876544
No 3
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=13.12 E-value=24 Score=31.00 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=6.4
Q ss_pred cCcceeeecCHH
Q 006371 186 HYPGIFKALSPH 197 (648)
Q Consensus 186 ~~p~Vl~AlnP~ 197 (648)
|||.||+|+||.
T Consensus 41 YDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 41 YDPKVLMAVDPE 52 (162)
T ss_dssp CCTTTEEEECTT
T ss_pred eCHHHhcccccC
Confidence 455555555553
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.11 E-value=58 Score=19.81 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=13.7
Q ss_pred cchHHHHHHHHHHhhhhhhH
Q 006371 419 GWIPFAISFFLAFIMFGWFN 438 (648)
Q Consensus 419 gw~pl~ia~~~~~im~~W~~ 438 (648)
||+.++.-.---.-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 68777776666666777743
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=7.50 E-value=13 Score=24.99 Aligned_cols=21 Identities=10% Similarity=0.616 Sum_probs=15.8
Q ss_pred ccchhhHHHHHHHhheeeEEe
Q 006371 333 VYSPEVNYILMILCVAVILIF 353 (648)
Q Consensus 333 iYiP~vNw~L~i~~i~vv~~F 353 (648)
|.||.+-|++-+.++.+.+..
T Consensus 13 I~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhee
Confidence 788999999888777655443
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.47 E-value=2.3e+02 Score=19.40 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc
Q 006371 363 FGVVVSLVMLITTILLTLVMIVIWR 387 (648)
Q Consensus 363 YGiaV~~~M~iTT~L~~~v~~~~w~ 387 (648)
-|+-|.+.+.+-+.++..+-+++|.
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4777777777777777666666663
No 7
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=5.84 E-value=2.3e+02 Score=21.01 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=23.8
Q ss_pred CCCCccEEEEEecCCCEEEEEEEE-eeccc
Q 006371 515 VAPEERIIVRKLGLKGVYGCVIQY-GYADT 543 (648)
Q Consensus 515 V~~~~R~~V~~l~~~g~yrv~lry-GF~e~ 543 (648)
.++.=+|.++.+. +|-|.+.+.+ ||...
T Consensus 34 Td~~G~F~f~~l~-~G~Y~l~is~~Gy~~~ 62 (79)
T d1vlfn1 34 TNFFGEFKFDALD-NGEYTVEIDADGKSYS 62 (79)
T ss_dssp CCTTSEEEEEEEC-SEEEEEEEEETTEEEE
T ss_pred ECCCCcEEEEecC-CCCEEEEEEEecccce
Confidence 5667889999998 9999999998 88764
No 8
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.71 E-value=61 Score=23.69 Aligned_cols=15 Identities=40% Similarity=0.579 Sum_probs=12.3
Q ss_pred CCCCCChHHHHHHHh
Q 006371 38 DDQGEGGTFALYSLL 52 (648)
Q Consensus 38 dn~GEGGi~aL~sL~ 52 (648)
=.|||||-+.|..|=
T Consensus 38 wengeggeltltqlg 52 (71)
T d2bnma1 38 WENGEGGELTLTQLG 52 (71)
T ss_dssp HHTTTCTTCBHHHHH
T ss_pred hhcCCCceeeHHHHH
Confidence 368999999998873
No 9
>d1tdpa_ a.29.8.1 (A:) Carnobacteriocin B2 immunity protein {Carnobacterium piscicola [TaxId: 2751]}
Probab=5.01 E-value=34 Score=27.77 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred eccccCCcccchHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHhccCceEEEEEeEEEEecCCCchHHHHHHHHHH
Q 006371 540 YADTLNLEGNDFVNQVTDCLREHIEKYLDCLPSNPVDIQEEISALEEAKLSDVIHVRGKTRFYIGKNCKRFDRIMLAFYE 619 (648)
Q Consensus 540 F~e~p~~~~~~f~~~iL~~L~~~i~~d~~~~~~~~~~~~~e~~~L~~a~~~~~~yflgre~L~~~~~s~~~kr~~i~lF~ 619 (648)
|.+ |.++.|++++++++.+....+.. +++..-++.+.--...=.+|+++|.+.++.++.. +|.
T Consensus 16 Y~~-P~vKA~~~L~~li~~~A~kl~~~--------~d~~aYv~vvt~LS~~ISkYYL~H~~~iP~em~a--------vfn 78 (111)
T d1tdpa_ 16 YKD-PEVKANEFLSKLVVQCAGKLTAS--------NSENSYIEVISLLSRGISSYYLSHKRIIPSSMLT--------IYT 78 (111)
T ss_dssp HTC-HHHHSCHHHHHHHHHHHHHHHTT--------TSHHHHHHHHHHHHHHHHHTCTTSCCCCCGGGTH--------HHH
T ss_pred hcC-ccccccHHHHHHHHHhhhccccc--------cCcchHHHHHHHHhcchHHHHHHhcccCcHHHHH--------HHH
Q ss_pred HHHh
Q 006371 620 VLHS 623 (648)
Q Consensus 620 ~Lkr 623 (648)
.+++
T Consensus 79 ~Ikk 82 (111)
T d1tdpa_ 79 QIQK 82 (111)
T ss_dssp HHHH
T ss_pred HHHh
No 10
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=4.42 E-value=5.6e+02 Score=24.87 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHhccChHHHHHHHHHHHHHHHHHHHHhhccccC--CcchHHHHHHHHHHhhhhhhHhHH
Q 006371 365 VVVSLVMLITTILLTLVMI-VIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPE--GGWIPFAISFFLAFIMFGWFNGRQ 441 (648)
Q Consensus 365 iaV~~~M~iTT~L~~~v~~-~~w~~~~~~~~~~~~~f~~id~~f~~an~~K~~~--Ggw~pl~ia~~~~~im~~W~~G~~ 441 (648)
.|.+....+.-.....+.- ..+++++...+...+.++..-..+++.+.....| .+=+.+.+.+.+-.+...|.+|.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHHHHHhc
Q 006371 442 KKIEYELTH 450 (648)
Q Consensus 442 ~~~~~~~~~ 450 (648)
+..+...+.
T Consensus 427 r~~~di~~~ 435 (509)
T d2a65a1 427 KAWEEINRG 435 (509)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Done!