BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006372
(648 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis
GN=nsun2 PE=2 SV=1
Length = 798
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 216/661 (32%), Positives = 334/661 (50%), Gaps = 110/661 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT Q++E++H N P G VIAND+D +RC LL+HQ KR+ + ++V NH
Sbjct: 185 MCAAPGSKTAQIIEMLHADMN-VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNH 243
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A P N S L +DR+LCDVPCSGDGTLRK D+W+KW
Sbjct: 244 DASSIPRLLVENNGSREV------------LYYDRILCDVPCSGDGTLRKNIDVWKKWTT 291
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LH LQ++IA RG+ L GGR+VYSTCS+NPVE+EAV+A +L K EGS+EL DV+
Sbjct: 292 LNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIASLLDKSEGSLELADVA 351
Query: 181 NEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKH 239
+E+P L PG+ +WKV K G W + + R I P+MFP PK
Sbjct: 352 SEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTSRHTQIRPTMFP------------PKD 399
Query: 240 GNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSP 299
EE++ + L RCMR++PH QN+G FF+AVL K +P
Sbjct: 400 -------------------------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAP 434
Query: 300 LPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSID 359
+P N + L R PP V D + PE L +
Sbjct: 435 MP------WNKRQPKLQRR--PP---------------VSACDASIAVAPE--LVKAVTE 469
Query: 360 NEDGAAVEPDPLTCEKVDSEETEV-PVNTETKSERTG------GKRKLQIQGKWKGIDPV 412
N G A EP VD+E E P ++ S +T +K+++ G + DP
Sbjct: 470 NSAGMADEP------AVDTENGETKPCTNQSDSSKTDIVCCPPPSKKMKLFGFKE--DPF 521
Query: 413 IFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVG 471
+F + D+ I + I+TFY +D SF L++R + + +++Y VSK +++ L N
Sbjct: 522 VFVSEDDPIFDPIQTFYALDPSFP-KKNLLTRTQEGKK-RQLYMVSKELRNVLLHN---S 576
Query: 472 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQY 531
+++K+ + G+K+ R + +G C++R++ EG+ + P+I +I+ S+ D K LL
Sbjct: 577 EKMKVINTGIKVLCR--NNDGEQYGCAYRLAQEGIYTLYPFINARIVTVSIEDIKVLLTQ 634
Query: 532 KTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSV 591
+ + F E ++A+ MG V+ + P + + G W+G+ S+
Sbjct: 635 ENPFLSKF-SKETQKQANNFDMGSIVLKYEPDPQ---EPETLQCPIVLCG-WRGKTSIRS 689
Query: 592 MVTAIDCQELLERLLMRLEIEKGDLVQE-----NALGTDEVQEEMNDNGKEEPESLEVAV 646
V + L + + + EK +++++ A + + E+M+ +G +E ES E++
Sbjct: 690 FVPKNERLHYLRMMGVEVFKEKAEVLEKKPVEGKACDEEHIDEKMDIDGAKE-ESKELSG 748
Query: 647 N 647
N
Sbjct: 749 N 749
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
GN=NSUN2 PE=2 SV=1
Length = 796
Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 196/599 (32%), Positives = 305/599 (50%), Gaps = 101/599 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT QL+E++H N P G VIAND+D +RC LL+HQ KR+ + ++V NH
Sbjct: 183 MCAAPGSKTAQLIEMLHADMN-VPFPKGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNH 241
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A P + ++ + L +DR+LCDVPCSGDGT+RK D+W+KW
Sbjct: 242 DASSIPNLQ------------VDVDGRKETLFYDRILCDVPCSGDGTMRKNIDVWKKWTT 289
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LH LQ++IA RG+ L GGR+VYSTCS+NP+ENEAV+A +L K +G++EL DVS
Sbjct: 290 QNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIENEAVIASLLEKSQGALELADVS 349
Query: 181 NEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKH 239
+E+P L PG+ KWKV K G W K V R+ I P+MFP
Sbjct: 350 SELPGLKRMPGITKWKVMLKDGQWFEEWKDVPSNRQTQIRPTMFPIKE------------ 397
Query: 240 GNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSP 299
EE++ + LERC+R++PH QN+G FF+AVL K SP
Sbjct: 398 -------------------------EEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSP 432
Query: 300 LPVVQEKHINPEEKMLPRNDDPPKKLQN--QDTEEVNGMEVDLADGTDEKDPEGSLEANS 357
+P N PK Q TE+ + DG+++ + +L
Sbjct: 433 MPW---------------NKRQPKVHQKLPGKTEDTEVTATNAGDGSEDATEKPTL---- 473
Query: 358 IDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTG--GKRKLQIQGKWKGIDPVIFF 415
A + +P +++ + +TE ++K G +K+++ G + DP +F
Sbjct: 474 -------AEDEEPKKVQELQNSDTE-----QSKKGVCGPPPSKKMKLFGFKE--DPFVFL 519
Query: 416 -NDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQL 474
D+ + I+ FY +D SF L++R + + +++Y VSK +++ L N +++
Sbjct: 520 PEDDPLFLPIQKFYALDPSFP-KMNLLTRTQEGKK-RQLYMVSKELRNVLLNN---SEKM 574
Query: 475 KITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTI 534
K+ + G+K++ R + +G C+FR++ EG+ + P+I +I+ + D K LL +
Sbjct: 575 KVINTGIKVWSRNS--DGEQFGCAFRLAQEGIYTLYPFIHARIVNVCIEDVKILLTQENP 632
Query: 535 KFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMV 593
+ F +E K + MG V+ E P + + G W+G+ SL V
Sbjct: 633 FLSKF-SSETQRKVKDMAMGSIVLKYEPDPE---KPDDLQCPIVLCG-WQGKTSLRAFV 686
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2
PE=1 SV=2
Length = 767
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 210/633 (33%), Positives = 318/633 (50%), Gaps = 102/633 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT QL+E++H N P G VIAND+D +RC LL+HQ KR+ + ++V NH
Sbjct: 183 MCAAPGSKTTQLIEMLHADMN-VPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNH 241
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A P + I+ + L +DR+LCDVPCSGDGT+RK D+W+KW
Sbjct: 242 DASSIPRLQ------------IDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTT 289
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LH LQ++IA RG L GGR+VYSTCS+NP+E+EAV+A +L K EG++EL DVS
Sbjct: 290 LNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVS 349
Query: 181 NEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKH 239
NE+P L PG+ +WKV K G W V R I P+MFP PK
Sbjct: 350 NELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFP------------PKD 397
Query: 240 GNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSP 299
E++ + LERC+R++PH QN+G FF+AVL K S
Sbjct: 398 -------------------------PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
Query: 300 LPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGS-LEANSI 358
+P + + KLQ + E ++ AD T+ K + S LE+ S
Sbjct: 433 MPWNKRQ----------------PKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSF 476
Query: 359 DNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGG---KRKLQIQGKWKGIDPVIFF 415
+ + TE N +K + G +K+++ G + DP +F
Sbjct: 477 TGTGDTEI-----------AHATEDLENNGSKKDGVCGPPPSKKMKLFGFKE--DPFVFI 523
Query: 416 -NDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQL 474
D+ + I+ FY +D SF L++R + + +++Y VSK +++ L N +++
Sbjct: 524 PEDDPLFPPIEKFYALDPSFP-RMNLLTRTTEGKK-RQLYMVSKELRNVLLNN---SEKM 578
Query: 475 KITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTI 534
K+ + G+K++ R S G C+FR++ EG+ + P+I +I+ S+ D K LL +
Sbjct: 579 KVINTGIKVWCRNNS--GEEFDCAFRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENP 636
Query: 535 KFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVT 594
F + +E +A L G V+ +NP + + G W+G+AS+ V
Sbjct: 637 FFRK-LSSETYSQAKDLAKGSIVLKYEPDS---ANPDALQCPIVLCG-WRGKASIRTFVP 691
Query: 595 AIDCQELLERL-LMRLEIEKGDLVQENALGTDE 626
E L L +M LE+ G+ +E + T+E
Sbjct: 692 K---NERLHYLRMMGLEV-LGEKKKEGVILTNE 720
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2
PE=1 SV=2
Length = 757
Score = 295 bits (755), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 208/652 (31%), Positives = 322/652 (49%), Gaps = 108/652 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT QL+E++H + P G VIAND+D +RC LL+HQ KR+ + ++V NH
Sbjct: 183 MCAAPGSKTTQLIEMLHADMS-VPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNH 241
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A P ++ + L +DR+LCDVPCSGDGT+RK D+W+KW
Sbjct: 242 DASSIPRLT------------VDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTT 289
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LH LQ++IA RG L GGR+VYSTCS+NPVE+EAV+A +L K EG++EL DVS
Sbjct: 290 LNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVS 349
Query: 181 NEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKH 239
E+P L PG+ +WKV + G W A V + R I P+MFP TD+
Sbjct: 350 AELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFP-------PTDL---- 398
Query: 240 GNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSP 299
E++ + LERC+R++PH QN+G FF+AVL K +P
Sbjct: 399 --------------------------EKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAP 432
Query: 300 LPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDP--EGSLEANS 357
+P + + K+QN+ + E V E +P + LE+
Sbjct: 433 MPWNKRQ----------------PKVQNK-SAEAREPRVSSHVAATEGNPSDQSELESQM 475
Query: 358 IDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTG-----GKRKLQIQGKWKGIDPV 412
I GA DSE NTE+ ++ G +K+++ G + DP
Sbjct: 476 I---TGAG-----------DSETAHNTENTESNEKKDGVCGPPPSKKMKLFGFKE--DPF 519
Query: 413 IFF-NDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVG 471
+F D+ + I+ FY +D SF L++R + + +++Y VSK +++ L N
Sbjct: 520 VFIPEDDPLFPPIEKFYALDPSFP-RMNLLTRTTEGKK-RQLYMVSKELRNVLLNN---S 574
Query: 472 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQY 531
+++K+ + G+K++ R S G C+FR++ EG+ + P+I +I+ S+ D K LL
Sbjct: 575 EKMKVINTGIKVWCRNNS--GEEFDCAFRLAQEGIYTLYPFINSRIITVSMEDVKTLLTQ 632
Query: 532 KTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSV 591
+ F + +E + L G V+ +NP + + G W+G+AS+
Sbjct: 633 ENPFFRK-LSSEAYSQVKDLAKGSVVLKYEPDS---ANPDTLQCPIVLCG-WRGKASIRT 687
Query: 592 MVTAIDCQELLERLLMRLEIEKGD----LVQENALGTDEVQEEMNDNGKEEP 639
V + L + + + EK L ENA ++ +E ++P
Sbjct: 688 FVPKNERLHYLRMMGLEVLGEKKKEGVILTNENAASPEQPGDEDAKQTAQDP 739
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis
GN=nsun2 PE=2 SV=1
Length = 698
Score = 293 bits (751), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 198/610 (32%), Positives = 310/610 (50%), Gaps = 95/610 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT Q++E++H N P G VIAND+D +RC LL+HQ KR+ + ++V NH
Sbjct: 181 MCAAPGSKTAQIIEMLHADMN-VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNH 239
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A P IE+ + L +DR+LCDVPCSGDGT+RK D+W+KW
Sbjct: 240 DASSIPRLL------------IENNGSREVLYYDRILCDVPCSGDGTMRKNIDVWKKWTT 287
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LH LQ++IA RG+ L GGR+VYSTCS+NPVE+EAV+ +L K EGS+EL DV+
Sbjct: 288 LNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIVSLLDKSEGSLELADVA 347
Query: 181 NEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKH 239
+E+P L PG+ +W+V K G W + V R I P+MFP
Sbjct: 348 SELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTSRHTQIRPTMFP--------------- 392
Query: 240 GNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSP 299
++D EE++ + L RCMR++PH QN+G FF+AVL K +P
Sbjct: 393 --------------LKD--------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAP 430
Query: 300 LPVVQEKHINPEEKMLPRNDDPPKKLQNQDTE-EVNGMEVDLADGTDEKDPEGSLEANSI 358
+P N + L R PP + + E+ D++ DE ++
Sbjct: 431 MP------WNKRQPKLQRR--PPVSVCDASVAPEIVKAVADISAIADEP---------AV 473
Query: 359 DNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN-D 417
D E+G E P T + S+ V +K + G ++ DP +F + D
Sbjct: 474 DAENG---ETKPCTNQSGSSKTDSVCCPPPSKKMKLFGFKE----------DPFVFLSED 520
Query: 418 ETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKIT 477
+ I I+ FY +D SF L++R + + +++Y VSK +++ L N +++K+
Sbjct: 521 DPIFEPIQKFYALDPSFP-KKNLLTRTQEGKK-RQLYMVSKELRNVLLHN---SEKMKVI 575
Query: 478 SVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFA 537
+ G+K+ R + +G C++R++ EG+ + P+I +IL S+ D K LL + +
Sbjct: 576 NTGIKVLCR--NNDGEQYGCAYRLAQEGIYSLYPFINARILTVSVEDIKVLLTQENPFLS 633
Query: 538 DFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAID 597
F E ++A+ L MG V+ + P + + G W+G+ S+ V +
Sbjct: 634 KF-SKETQKQANNLDMGSIVLKYEPDPQ---QPETLQCPIVLCG-WRGKTSIRSFVFFLH 688
Query: 598 CQELLERLLM 607
L++ + +
Sbjct: 689 RINLVQWIFI 698
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4b PE=3 SV=2
Length = 685
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 196/630 (31%), Positives = 283/630 (44%), Gaps = 148/630 (23%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPN---------GMVIANDLDVQRCNLLIHQTKRMC 51
MCAAPGSKT QL+E +++ N + G+VIAND D +R +L+HQ R+
Sbjct: 166 MCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQINRLN 225
Query: 52 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 111
+ N++V NH+A P SS SD G+ L FDR+L DVPCSGDGT RK
Sbjct: 226 SPNILVVNHDASTMPNIYVKG--SSPSD-GLNVIEEKKILKFDRILADVPCSGDGTFRKN 282
Query: 112 PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 171
+WR+W+ LH LQ++I +RG+ LLKVGG +VYSTCS+NP+ENEAVV L+
Sbjct: 283 LSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVTAALKATG 342
Query: 172 GSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMD 231
G+V LVDVS ++P L PGL WKV D + +I + SM+P
Sbjct: 343 GAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSPAENTNDKIELTESMWPLP----- 397
Query: 232 ATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFI 291
EEE+S L +ERC RL PH QN+G FF+
Sbjct: 398 ---------------------------------EEEMSKLHIERCARLYPHMQNTGGFFV 424
Query: 292 AVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEG 351
AVLQK P + + +P++ PP+ + Q TE+ G DE
Sbjct: 425 AVLQKTDP---INSRSFDPKKYTASMEILPPEN-KRQRTEK----------GVDE----- 465
Query: 352 SLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDP 411
+NS + G + D E P
Sbjct: 466 --ASNSTLTKSGNSY---------FDEE-------------------------------P 483
Query: 412 VIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRV 470
++ N D+T I +I FYGID SF Q RN V+ IY+ K+ ++ N
Sbjct: 484 FVYINPDDTSIKTIVDFYGIDPSFP-RDQFFVRNQSGIPVRSIYFACSLFKEIIEAN--- 539
Query: 471 GQQLKITSVGLKMFERQT--------SREGNSAPCSFRISSEGLPVILPYITKQILY-AS 521
++K G++ F +Q S + N C+FRI S G+ +I P++ ++ Y A
Sbjct: 540 TNRVKFVHGGVRFFVKQEISQLLKDFSLKANKDICNFRIHSNGVNIISPFLNEKHFYDAG 599
Query: 522 LVDFKHLLQYKTIKFADFVDAEFGEKA-SKLMMGCCVIVLSKGGEALSNPIQIDAST--- 577
L D K L++ + F ++ +K K+ +GC N +++DA T
Sbjct: 600 LKDLKILVKNEYPHVEQFSESGMLKKEFEKMPLGC-------------NILRVDAQTKDG 646
Query: 578 ------IAIGCWKGRASLSVMVTAIDCQEL 601
I W+ S ++M+ + Q L
Sbjct: 647 ALMDMLILQPIWRSPTSCNLMLARKEKQNL 676
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila
melanogaster GN=CG6133 PE=2 SV=1
Length = 746
Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 167/509 (32%), Positives = 246/509 (48%), Gaps = 115/509 (22%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT QL+E +H + +P G V+AND+D RC +L+HQ KR+ + L+VTNH
Sbjct: 183 MCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNH 242
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
++ FP K + + L FD++LCDVPCSGDGTLRK PDIW KWN+
Sbjct: 243 DSSVFPNLVTTK-----------PDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNL 291
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LH +Q +I RG +L+VGGR+VYSTCS+NP+ENEAV+ I++ +G++ELVD
Sbjct: 292 AQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDAG 351
Query: 181 NEVPQLIHRPGLRKWKVRDKGI--WLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPK 238
+ VP L ++PG+ WK+ K + + V + I P MFP +
Sbjct: 352 HLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA----------- 400
Query: 239 HGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVS 298
+E++ + LE+C+R++PH Q+SG FF+AVL+K
Sbjct: 401 ---------------------------DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRR 433
Query: 299 PLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSI 358
L + D E+ V L + + E ++A
Sbjct: 434 QL-----------------------SFEKNDVVEL----VKLNETAKQPAAEPQVDA--- 463
Query: 359 DNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFND- 417
DG + EE VP + K R G ++ DP +FF +
Sbjct: 464 ---DGKPI------------EEKSVPWGPQRKKRRLHGYKE----------DPYVFFGEN 498
Query: 418 ETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKIT 477
+ +IK FY +D+S LS + + T + K IYY S+ ++ DL +KI
Sbjct: 499 DPDYQAIKEFYQLDES--LSQRCLLTRCVTEKKKNIYYCSEPIR---DLVLNNENNIKII 553
Query: 478 SVGLKMFERQTSREGNSAPCSFRISSEGL 506
+ G+K F R +R FR++ EGL
Sbjct: 554 NTGVKTFVRCENRHTVH---PFRLAQEGL 579
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4a PE=1 SV=3
Length = 688
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 192/630 (30%), Positives = 299/630 (47%), Gaps = 136/630 (21%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNP----GALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI 56
MCAAPGSKT QLLE +H+ T LP+G+VIAND D +R ++L+HQ KR+ + N++
Sbjct: 166 MCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVHQIKRLNSPNVL 225
Query: 57 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR 116
+ NH+A P NF +S G + L FDR+L DVPCSGDGT RK +W
Sbjct: 226 IVNHDASFLP------NFHLSSPDGKKF------LKFDRILADVPCSGDGTFRKNIALWN 273
Query: 117 KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVEL 176
+W++ GLH+ Q++I MRG+ LL+ GGR+VYSTCS+NP+ENEAVV+ +L GSV L
Sbjct: 274 EWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATRGSVRL 333
Query: 177 VDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIE 236
VDVS+E+PQL G+ W V D + I PS D
Sbjct: 334 VDVSSELPQLKRSQGVDNWVVCDSD--------------LNIYPSF-----------DTL 368
Query: 237 PKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 296
PK E +++ L ++E+++L ++ C+R+ PH QN+G FF+AVL+K
Sbjct: 369 PK----------ELYEKMPPTLWPLP--KKELAELNIQNCLRIYPHFQNTGGFFVAVLEK 416
Query: 297 VSPL-----PVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEG 351
L V + + E+ LP + K + QDT+E + + LA E P+G
Sbjct: 417 YENLTSSMKTAVDDNKVFLREQKLP--SEQASKKRKQDTQETSS-DSKLA----EVKPKG 469
Query: 352 SLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDP 411
+ GG R + +DP
Sbjct: 470 -----------------------------------------KNGGNR-------FHELDP 481
Query: 412 VIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRV 470
++ D+ + I +GID++ Q RN + K IY + ++ ++ N
Sbjct: 482 FVYIKEDDQALEKIYKKFGIDEAIIKKNQFFVRNVNGVPTKAIYISNDLFRNVIENN--- 538
Query: 471 GQQLKITSVGLKMFERQ----TSRE--GNSAPCSFRISSEGLPVILPYITKQILY-ASLV 523
++K GLK+F RQ SRE + C FR+ S+G + +I + L+ +L
Sbjct: 539 RNRVKFVHGGLKIFVRQDFGSLSREIAEKNGTCVFRVQSDGANLASHFIAESCLFHTTLS 598
Query: 524 DFKHLLQYKTIKFADFV-DAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGC 582
D LL ++ + DF D+ F ++ + L +G ++ + E + + I
Sbjct: 599 DLFILLDHEAVTIDDFPEDSLFRKEYNHLDLGSTLLHVDLAKEE-----SVIKKQVYIPL 653
Query: 583 WKGRASLSVMVTAIDCQELLERLLMRLEIE 612
WK +V+++ E+ ++L+IE
Sbjct: 654 WKSVRICNVLLSNS------EKRTLKLQIE 677
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NCL1 PE=1 SV=1
Length = 684
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 170/297 (57%), Gaps = 57/297 (19%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPGSKT QL+E +H+ T+ P+G V+AND D +R ++L+HQ KR+ +ANL+V NH
Sbjct: 172 MCAAPGSKTAQLIEALHKDTDE---PSGFVVANDADARRSHMLVHQLKRLNSANLMVVNH 228
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+AQ FP R + N ++ +D L FDR+LCDVPCSGDGT+RK ++W+ WN
Sbjct: 229 DAQFFPRIRLHGNSNNKND----------VLKFDRILCDVPCSGDGTMRKNVNVWKDWNT 278
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
G GLH++Q+ I RG+ LLK GR+VYSTCS+NP+ENEAVVAE LRK + LV+
Sbjct: 279 QAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAEALRKWGDKIRLVNCD 338
Query: 181 NEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHG 240
+++P LI G+ KW V D+ +
Sbjct: 339 DKLPGLIRSKGVSKWPVYDRNL-------------------------------------- 360
Query: 241 NVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 297
DEG ++ + + EEE S L+ CMR+ PH QN+G FFI V +KV
Sbjct: 361 -TEKTKGDEG--TLDSFFSPS---EEEASKFNLQNCMRVYPHQQNTGGFFITVFEKV 411
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 29/243 (11%)
Query: 374 EKVDSE----ETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDE-TIINSIKTFY 428
EK+ SE E+E P + K E K +L +P +F + + + FY
Sbjct: 420 EKLSSETPALESEGPQTKKIKVEEVQKKERLPRDA---NEEPFVFVDPQHEALKVCWDFY 476
Query: 429 GIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT 488
GID+ F + LV RN + +Y V ++KD + N +LKI G+K+F Q
Sbjct: 477 GIDNIFDRNTCLV-RNATGEPTRVVYTVCPALKDVIQAN---DDRLKIIYSGVKLFVSQR 532
Query: 489 SREGNSAPCSFRISSEGLPVILPYI-TKQILYASLVDFKHLLQYKTIKFADF----VDAE 543
S CS+RI SE LP++ ++ + +I+ A+L KHLL F D +D +
Sbjct: 533 S----DIECSWRIQSESLPIMKHHMKSNRIVEANLEMLKHLLIESFPNFDDIRSKNIDND 588
Query: 544 FGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLE 603
F EK +KL GC I +S+ A N + + WKG +++MV D ELL
Sbjct: 589 FVEKMTKLSSGCAFIDVSRNDPAKEN--------LFLPVWKGNKCINLMVCKEDTHELLY 640
Query: 604 RLL 606
R+
Sbjct: 641 RIF 643
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q+ + + G +IAND R N+LI R VT
Sbjct: 117 MAAAPGSKTTQMAQYMEN--------EGCIIANDAKRDRANILIANLTRAGVLIAKVTVK 168
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+ +F FDRVL D PCS G +RK R W++
Sbjct: 169 DGAYFARYENT---------------------FDRVLLDAPCSSVGMIRKNFKFARTWSI 207
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179
G LQ ++ + LK GG +VYSTC+++P+ENE VV +L+K + +E V +
Sbjct: 208 GKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKL 266
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT Q+ ++ G+++AN+ R +L RM AN +T+
Sbjct: 120 MASAPGSKTTQIAALMGN--------KGLLVANEYSASRVKVLHANIARMGVANCALTHF 171
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A+ F + E +FD VL D PCSG+GT+RK PD + W+
Sbjct: 172 DARVF------------GEYMFE--------IFDSVLLDAPCSGEGTIRKDPDALKNWDN 211
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
G+ Q + LK GG +VYSTC+++ EN+ V + ++ +VE +++S
Sbjct: 212 NDVKGIVDTQKALIDSAFQSLKAGGELVYSTCALSRQENQNVCDYLKQRYPDAVEFINLS 271
Query: 181 NEVP 184
+ P
Sbjct: 272 SLFP 275
>sp|A8H3W2|RSMF_SHEPA Ribosomal RNA small subunit methyltransferase F OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmF PE=3
SV=1
Length = 488
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT Q+ ++ G++IAN+ R +L RM AN +T+
Sbjct: 134 MASAPGSKTTQIAALMKN--------QGLLIANEYSASRVKVLHANVARMGVANCALTHF 185
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A+ F + E+ FD +L D PCSG+GT+RK PD + W+
Sbjct: 186 DARVF------------GEYMFET--------FDSILLDAPCSGEGTIRKDPDALKNWDN 225
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
G+ Q + LKVGG +VYSTC+++ EN+ V + +VE ++
Sbjct: 226 NDDKGIVETQKALIESAFLALKVGGSLVYSTCALSRQENQDVCHHLKSLYGDAVEFGSLA 285
Query: 181 NEVPQ 185
PQ
Sbjct: 286 TLFPQ 290
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT QL +++ G+++AN+ R +L +RM +NL +T+
Sbjct: 121 MASAPGSKTTQLAAMMNN--------QGLLVANEYSSSRVKVLHANVQRMGASNLALTHF 172
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+A+ F F S FD +L D PC G+GT+RK PD + W+
Sbjct: 173 DARVF----GKYLFES----------------FDAILLDAPCGGEGTVRKDPDALKHWDE 212
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ S+Q + LK GG +VYSTC++N EN+ V + +V+ ++
Sbjct: 213 SEIEAIASVQRDLIESAFLALKPGGSLVYSTCTLNRRENQDVCLHLKATYGDAVQFESLA 272
Query: 181 NEVP 184
P
Sbjct: 273 GLFP 276
>sp|B0TIZ6|RSMF_SHEHH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
halifaxensis (strain HAW-EB4) GN=rsmF PE=3 SV=1
Length = 479
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT Q+ +++ G+++AN+ R +L RM +N +T+
Sbjct: 127 MASAPGSKTTQIAALMNN--------QGLLVANEYSASRVKVLHANVARMGVSNCALTHF 178
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLF---DRVLCDVPCSGDGTLRKAPDIWRK 117
+A+ F G+ LF D VL D PCSG+GT+RK PD +
Sbjct: 179 DARVF-----------------------GEYLFETFDSVLLDAPCSGEGTIRKDPDALKN 215
Query: 118 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 177
W+ G+ Q + LKVGG +VYSTC+++ EN+ V + +VE
Sbjct: 216 WDNNDNKGIVDTQKALIESAFLALKVGGCLVYSTCALSRQENQDVCHHLKTAFGEAVEFA 275
Query: 178 DVSNEVP 184
++ P
Sbjct: 276 ALTELFP 282
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 34/187 (18%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT Q+ ++ S G++IAN+ R +L RM +N +T+
Sbjct: 120 MASAPGSKTTQIAAMMDNS--------GLLIANEYSSSRVKVLHANVLRMGVSNTALTHF 171
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLL---FDRVLCDVPCSGDGTLRKAPDIWRK 117
+A+ F G+ L FD +L D PCSG+GT+RK P
Sbjct: 172 DARVF-----------------------GEYLYDQFDAILLDAPCSGEGTIRKDPLALNN 208
Query: 118 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 177
W + + + Q + LK GG +VYSTC+++ +EN+ V + +VE
Sbjct: 209 WGLAENSAIAETQKALLESAFLALKTGGSLVYSTCALSKLENQDVCEHLRSTFPEAVEFE 268
Query: 178 DVSNEVP 184
++ P
Sbjct: 269 SLATLFP 275
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNKGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L++GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNKGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L++GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNKGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L++GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 34/186 (18%)
Query: 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE 61
AAPGSKT Q+ +++ GM++AN+ R +L +R N+ +T+ +
Sbjct: 125 AAAPGSKTTQIAALMNN--------QGMLVANEYSSSRLKVLSANIQRCGVTNVGMTHFD 176
Query: 62 AQHFPGCRANKNFSSASDKGIESESNMGQLL---FDRVLCDVPCSGDGTLRKAPDIWRKW 118
A+ F GQ L FD +L D PCSG+GT+RK D R W
Sbjct: 177 AKVF-----------------------GQWLPETFDAILLDAPCSGEGTVRKDEDALRNW 213
Query: 119 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 178
++ + + ++Q + LK GG +VYSTC+++ EN+AV +L K ++ L
Sbjct: 214 SIESIDEIAAVQQGLLESAFHALKPGGVLVYSTCTLSQQENQAVCQSLLEKFGDALTLDS 273
Query: 179 VSNEVP 184
+++ P
Sbjct: 274 LADLFP 279
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q+ ++ G ++AN+ R +L R +N+ +T
Sbjct: 124 IAAAPGSKTTQIAARMNN--------EGTILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L++GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 34/187 (18%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT Q+ ++ G+++AN+ R +L +RM N +T+
Sbjct: 120 MASAPGSKTTQMASLMDN--------KGLLVANEYSSSRVKVLHANVQRMGVYNTALTHF 171
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLL---FDRVLCDVPCSGDGTLRKAPDIWRK 117
+A+ F G+ L FD +L D PCSG+GT+RK P R
Sbjct: 172 DARVF-----------------------GEYLYHQFDAILLDAPCSGEGTIRKDPLALRN 208
Query: 118 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 177
W++ + Q + LK GG +VYSTC+++ EN+ V ++ +VE
Sbjct: 209 WSLEENASIIETQKALIESAFLALKTGGSLVYSTCALSRSENQEVCEHLMSCFPQAVEFQ 268
Query: 178 DVSNEVP 184
+S P
Sbjct: 269 SLSELFP 275
>sp|Q3IHA0|RSMF_PSEHT Ribosomal RNA small subunit methyltransferase F
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rsmF PE=3 SV=2
Length = 482
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 30/168 (17%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M +APGSKT QL +++ G+++AN+L R +L KRM N ++
Sbjct: 125 MASAPGSKTSQLAALMNN--------QGVLVANELSSSRLKVLSATLKRMGVGNCALS-- 174
Query: 61 EAQHFPGC-RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN 119
HF G N F FD +L D PCSG+GT+RK D + W+
Sbjct: 175 ---HFDGVIFGNYMFEC----------------FDSILLDAPCSGEGTVRKDADALKNWS 215
Query: 120 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 167
+ + +Q + LK GG +VYSTC++ P+EN+ V +L
Sbjct: 216 IDSNIEIAQVQKDLIKSAFYALKPGGTLVYSTCTLTPLENQHVCDFLL 263
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q I + N GA ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQ---IAARMGNRGA-----ILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q I + N GA ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQ---IAARMGNRGA-----ILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q I + N GA ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQ---IAARMGNRGA-----ILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q I + N GA ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQ---IAARMGNRGA-----ILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q I + N GA ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQ---IAARMGNRGA-----ILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|A9MNH4|RSMF_SALAR Ribosomal RNA small subunit methyltransferase F OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmF PE=3 SV=2
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q I + N GA ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQ---IAARMGNHGA-----ILANEFSASRVKILHANLCRCGVANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + ++
Sbjct: 216 ESNLDIAATQRELLESAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYTDAVEFLPLN 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q+ + G ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQIAARMGN--------RGTILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q+ + G ++AN+ R +L R AN +T
Sbjct: 124 MAAAPGSKTTQIAARMGN--------RGTILANEFSASRVKVLHANISRCGIANTALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---ISARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---ISARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---ISARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---ISARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q I + N GA ++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + +FD +L D PCSG+G +RK PD + W+
Sbjct: 174 ---HFDG----RVFGAALPE-----------MFDAILLDAPCSGEGVVRKDPDALKNWSP 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 216 ESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLG 275
Query: 181 NEVP 184
+ P
Sbjct: 276 DLFP 279
>sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransferase F OS=Enterobacter sp.
(strain 638) GN=rsmF PE=3 SV=1
Length = 480
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPGSKT Q+ + G+++AN+ R +L R +N+ +T
Sbjct: 124 VAAAPGSKTTQIAARMGN--------RGVILANEFSASRVKVLHANISRCGISNVALT-- 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G + F +A + FD +L D PCSG+G +RK PD + W+V
Sbjct: 174 ---HFDG----RVFGAALPES-----------FDAILLDAPCSGEGVVRKDPDALKNWSV 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q ++ L+ GG +VYSTC++N ENE+V + + +VE + +
Sbjct: 216 ASNLEIAATQRELIDSAFHALRPGGMLVYSTCTLNRDENESVCLWLKEQYPQAVEFLPLD 275
Query: 181 NEVP 184
+ P
Sbjct: 276 SLFP 279
>sp|A1RIZ0|RSMF_SHESW Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain W3-18-1) GN=rsmF PE=3 SV=2
Length = 486
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ +APGSKT Q+ ++H S G++IAN+ R +L RM ++ +T
Sbjct: 123 LASAPGSKTTQIAALMHNS--------GLLIANEYSASRVKVLHANVLRMGASHCALT-- 172
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G R + S FD VL D PC G+GT+RK D + W++
Sbjct: 173 ---HFDG-RVFGEYLYES--------------FDAVLIDAPCGGEGTVRKDADALKHWSL 214
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 172
+ Q + LK GG +VYSTC++N +EN+ V E L++ G
Sbjct: 215 NDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLENQG-VCEYLKQTYG 265
>sp|A4Y7J8|RSMF_SHEPC Ribosomal RNA small subunit methyltransferase F OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rsmF PE=3
SV=2
Length = 486
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ +APGSKT Q+ ++H S G++IAN+ R +L RM ++ +T
Sbjct: 123 LASAPGSKTTQIAALMHNS--------GLLIANEYSASRVKVLHANVLRMGASHCALT-- 172
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
HF G R + S FD VL D PC G+GT+RK D + W++
Sbjct: 173 ---HFDG-RVFGEYLYES--------------FDAVLIDAPCGGEGTVRKDADALKHWSL 214
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 172
+ Q + LK GG +VYSTC++N +EN+ V E L++ G
Sbjct: 215 NDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLENQG-VCEYLKQTYG 265
>sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2
Length = 473
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPGSKT Q+ ++ G+++AN+ R +L +R N ++N
Sbjct: 122 MAAAPGSKTTQMAALMDN--------QGVLVANEFSASRVKVLHANIERCGIRNTALSNF 173
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+ F G + FD VL D PCSG+GT+RK PD + W++
Sbjct: 174 DGCVFGGWLPER--------------------FDAVLIDAPCSGEGTIRKDPDAMKNWSL 213
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
+ + Q + LKVGG +VYSTC+++ EN+ V + + +V +
Sbjct: 214 ESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLG 273
Query: 181 N 181
N
Sbjct: 274 N 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,296,945
Number of Sequences: 539616
Number of extensions: 10781635
Number of successful extensions: 30274
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 29583
Number of HSP's gapped (non-prelim): 452
length of query: 648
length of database: 191,569,459
effective HSP length: 124
effective length of query: 524
effective length of database: 124,657,075
effective search space: 65320307300
effective search space used: 65320307300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)