Query 006372
Match_columns 648
No_of_seqs 312 out of 1553
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 22:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2198 tRNA cytosine-5-methyl 100.0 1.5E-51 3.2E-56 433.4 14.5 199 1-216 162-362 (375)
2 COG0144 Sun tRNA and rRNA cyto 100.0 1.3E-48 2.8E-53 419.5 20.4 153 1-179 163-315 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 2E-47 4.3E-52 422.2 28.9 321 1-561 120-442 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 1.8E-45 4E-50 384.1 13.6 152 1-180 92-247 (283)
5 KOG1122 tRNA and rRNA cytosine 100.0 5E-44 1.1E-48 379.7 13.3 156 1-184 248-403 (460)
6 TIGR00446 nop2p NOL1/NOP2/sun 100.0 3.1E-40 6.6E-45 341.3 18.8 143 1-172 78-220 (264)
7 PRK14903 16S rRNA methyltransf 100.0 3.8E-37 8.3E-42 338.6 19.0 150 1-179 244-393 (431)
8 PRK14901 16S rRNA methyltransf 100.0 1.5E-35 3.3E-40 326.2 17.2 146 1-171 259-404 (434)
9 TIGR00563 rsmB ribosomal RNA s 100.0 1E-34 2.2E-39 318.9 19.2 142 1-171 245-388 (426)
10 PRK14904 16S rRNA methyltransf 100.0 2.5E-34 5.3E-39 317.5 19.9 148 1-179 257-404 (445)
11 PRK14902 16S rRNA methyltransf 100.0 4.2E-33 9.1E-38 307.6 20.3 150 1-179 257-406 (444)
12 PRK10901 16S rRNA methyltransf 100.0 4.7E-31 1E-35 290.1 19.3 142 1-171 251-392 (427)
13 KOG2360 Proliferation-associat 99.9 2.4E-26 5.3E-31 243.0 11.0 150 1-178 220-371 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.0 2.1E-09 4.5E-14 118.1 13.7 141 1-181 227-371 (396)
15 COG2242 CobL Precorrin-6B meth 99.0 3.6E-09 7.7E-14 104.4 13.7 131 3-196 43-174 (187)
16 COG1092 Predicted SAM-dependen 98.9 2E-08 4.4E-13 109.8 13.0 140 1-180 224-367 (393)
17 PRK00377 cbiT cobalt-precorrin 98.7 1.2E-07 2.5E-12 94.3 13.1 124 1-180 47-171 (198)
18 TIGR00537 hemK_rel_arch HemK-r 98.7 4E-07 8.8E-12 88.7 14.6 137 1-177 26-163 (179)
19 TIGR03704 PrmC_rel_meth putati 98.7 3.2E-07 6.9E-12 95.0 13.7 138 1-173 93-234 (251)
20 TIGR01177 conserved hypothetic 98.6 2.4E-07 5.2E-12 99.3 12.7 111 1-156 189-299 (329)
21 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3.6E-07 7.7E-12 107.4 14.6 136 1-181 545-682 (702)
22 PF10672 Methyltrans_SAM: S-ad 98.6 9.8E-08 2.1E-12 100.6 8.6 115 1-159 130-246 (286)
23 PF13659 Methyltransf_26: Meth 98.6 1.8E-07 4E-12 83.8 8.1 110 1-153 7-117 (117)
24 PRK14967 putative methyltransf 98.5 1.6E-06 3.4E-11 87.8 15.1 137 1-177 43-182 (223)
25 TIGR03534 RF_mod_PrmC protein- 98.5 1.8E-06 3.9E-11 87.6 14.4 136 1-171 94-233 (251)
26 TIGR03533 L3_gln_methyl protei 98.3 1.3E-05 2.9E-10 84.4 15.8 134 1-171 128-266 (284)
27 PF12847 Methyltransf_18: Meth 98.3 6.8E-06 1.5E-10 72.9 11.2 104 1-152 8-112 (112)
28 PTZ00146 fibrillarin; Provisio 98.3 9E-06 1.9E-10 86.0 13.8 97 1-150 139-236 (293)
29 PRK11805 N5-glutamine S-adenos 98.3 5.8E-06 1.3E-10 88.2 11.3 132 1-170 140-277 (307)
30 PRK09328 N5-glutamine S-adenos 98.2 1.7E-05 3.8E-10 81.9 14.3 135 1-171 115-254 (275)
31 PRK04266 fibrillarin; Provisio 98.2 1.6E-05 3.5E-10 81.3 12.8 97 1-150 79-175 (226)
32 PRK00121 trmB tRNA (guanine-N( 98.2 8.1E-06 1.8E-10 81.7 10.3 121 1-169 47-168 (202)
33 PF05175 MTS: Methyltransferas 98.2 1.5E-05 3.2E-10 77.5 11.1 101 1-149 38-138 (170)
34 TIGR00080 pimt protein-L-isoas 98.2 1.2E-05 2.5E-10 81.0 10.7 93 1-150 84-176 (215)
35 TIGR00438 rrmJ cell division p 98.1 2.4E-05 5.3E-10 76.9 12.4 123 1-169 39-161 (188)
36 PRK07402 precorrin-6B methylas 98.1 2.6E-05 5.7E-10 77.2 12.4 119 1-178 47-167 (196)
37 TIGR02469 CbiT precorrin-6Y C5 98.1 3.5E-05 7.5E-10 69.1 11.7 97 1-151 26-122 (124)
38 PRK14968 putative methyltransf 98.1 5.9E-05 1.3E-09 73.0 14.2 134 1-171 30-165 (188)
39 PRK03522 rumB 23S rRNA methylu 98.1 9.4E-06 2E-10 86.6 8.8 97 1-154 180-276 (315)
40 TIGR00536 hemK_fam HemK family 98.1 7E-05 1.5E-09 78.8 15.0 132 1-168 121-257 (284)
41 PRK08287 cobalt-precorrin-6Y C 98.1 5.3E-05 1.2E-09 74.4 12.9 111 1-171 38-148 (187)
42 TIGR00091 tRNA (guanine-N(7)-) 97.9 5.2E-05 1.1E-09 75.3 8.7 110 1-151 23-132 (194)
43 TIGR00138 gidB 16S rRNA methyl 97.8 0.00017 3.6E-09 71.3 12.0 118 1-179 49-167 (181)
44 PRK00107 gidB 16S rRNA methylt 97.8 0.00018 3.9E-09 71.6 12.2 113 1-174 52-164 (187)
45 PRK13942 protein-L-isoaspartat 97.8 9.7E-05 2.1E-09 74.5 10.0 71 1-100 83-153 (212)
46 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00012 2.6E-09 81.3 11.5 99 1-154 299-398 (431)
47 PF08704 GCD14: tRNA methyltra 97.8 0.00012 2.6E-09 76.0 10.7 110 3-171 49-163 (247)
48 cd02440 AdoMet_MTases S-adenos 97.7 0.00025 5.3E-09 59.4 9.5 98 2-150 6-103 (107)
49 PF13847 Methyltransf_31: Meth 97.7 0.00021 4.6E-09 67.6 10.1 103 1-153 10-112 (152)
50 PRK13168 rumA 23S rRNA m(5)U19 97.7 9.8E-05 2.1E-09 82.5 9.0 77 1-105 304-380 (443)
51 PRK00312 pcm protein-L-isoaspa 97.7 0.00025 5.5E-09 70.9 10.8 92 1-152 85-176 (212)
52 PF02475 Met_10: Met-10+ like- 97.7 0.00011 2.4E-09 74.0 8.2 92 1-149 108-200 (200)
53 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00011 2.5E-09 80.7 8.9 94 1-150 64-157 (382)
54 TIGR02752 MenG_heptapren 2-hep 97.7 0.00031 6.7E-09 70.8 11.3 100 1-151 52-151 (231)
55 PRK11188 rrmJ 23S rRNA methylt 97.7 0.00037 7.9E-09 70.4 11.7 122 1-170 58-181 (209)
56 PLN02476 O-methyltransferase 97.7 0.00016 3.4E-09 76.3 8.9 104 2-153 126-230 (278)
57 PF01135 PCMT: Protein-L-isoas 97.7 0.00015 3.1E-09 73.6 8.3 91 3-150 81-171 (209)
58 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.00026 5.7E-09 77.8 10.5 110 1-154 129-238 (390)
59 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00016 3.5E-09 79.3 8.4 98 1-153 51-148 (374)
60 PRK13944 protein-L-isoaspartat 97.6 0.00041 8.9E-09 69.5 10.6 93 1-150 79-172 (205)
61 PLN02781 Probable caffeoyl-CoA 97.6 0.00032 7E-09 72.0 9.4 103 2-152 76-179 (234)
62 COG1041 Predicted DNA modifica 97.6 0.00034 7.4E-09 75.5 9.9 92 27-152 219-311 (347)
63 PF03602 Cons_hypoth95: Conser 97.5 0.00016 3.6E-09 71.6 6.1 74 1-101 49-123 (183)
64 COG2519 GCD14 tRNA(1-methylade 97.5 0.00053 1.1E-08 71.1 9.7 94 3-153 103-198 (256)
65 PF01209 Ubie_methyltran: ubiE 97.5 0.00029 6.3E-09 72.4 7.7 115 1-169 54-168 (233)
66 PRK10909 rsmD 16S rRNA m(2)G96 97.5 0.0006 1.3E-08 68.6 9.6 71 1-101 60-130 (199)
67 COG2520 Predicted methyltransf 97.4 0.00069 1.5E-08 73.3 10.5 136 1-196 195-334 (341)
68 PF01728 FtsJ: FtsJ-like methy 97.4 0.00012 2.6E-09 71.5 4.2 132 1-178 30-163 (181)
69 PRK11873 arsM arsenite S-adeno 97.4 0.0011 2.3E-08 68.9 11.4 101 2-153 85-185 (272)
70 COG2518 Pcm Protein-L-isoaspar 97.4 0.00054 1.2E-08 69.3 8.7 88 3-150 81-168 (209)
71 PRK09489 rsmC 16S ribosomal RN 97.4 0.0024 5.2E-08 69.4 13.9 108 1-158 203-310 (342)
72 COG2226 UbiE Methylase involve 97.4 0.00085 1.8E-08 69.3 9.8 108 1-162 58-165 (238)
73 PRK13943 protein-L-isoaspartat 97.3 0.00097 2.1E-08 71.8 10.0 94 1-151 87-180 (322)
74 PRK14966 unknown domain/N5-glu 97.3 0.004 8.7E-08 69.2 14.3 136 1-171 258-397 (423)
75 COG0742 N6-adenine-specific me 97.3 0.001 2.2E-08 66.4 8.7 73 1-101 50-123 (187)
76 PF09445 Methyltransf_15: RNA 97.3 0.0011 2.3E-08 64.9 8.7 80 1-109 6-86 (163)
77 PRK08317 hypothetical protein; 97.3 0.0026 5.6E-08 63.3 11.5 116 1-168 26-145 (241)
78 TIGR02085 meth_trns_rumB 23S r 97.2 0.0011 2.3E-08 72.8 8.9 70 1-101 240-309 (374)
79 PRK01544 bifunctional N5-gluta 97.2 0.0053 1.1E-07 70.1 14.7 135 1-171 145-285 (506)
80 PRK11036 putative S-adenosyl-L 97.2 0.0033 7E-08 64.9 11.7 100 1-153 51-151 (255)
81 PF01596 Methyltransf_3: O-met 97.2 0.00042 9.1E-09 70.0 5.0 103 4-154 55-158 (205)
82 COG4122 Predicted O-methyltran 97.2 0.0013 2.8E-08 67.2 8.3 98 6-155 71-170 (219)
83 COG2265 TrmA SAM-dependent met 97.2 0.001 2.3E-08 74.3 8.3 76 2-106 301-376 (432)
84 COG2263 Predicted RNA methylas 97.1 0.0096 2.1E-07 59.5 13.6 115 1-177 52-166 (198)
85 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0012 2.7E-08 72.0 7.5 54 1-65 213-266 (362)
86 PRK00517 prmA ribosomal protei 97.0 0.0082 1.8E-07 62.0 12.9 92 28-178 143-235 (250)
87 TIGR00406 prmA ribosomal prote 97.0 0.0073 1.6E-07 63.8 12.5 113 2-178 167-280 (288)
88 PF08241 Methyltransf_11: Meth 97.0 0.0018 4E-08 54.7 6.5 91 3-149 5-95 (95)
89 PLN02233 ubiquinone biosynthes 97.0 0.0058 1.3E-07 63.7 11.3 103 1-154 80-185 (261)
90 PLN02244 tocopherol O-methyltr 97.0 0.0056 1.2E-07 66.3 11.3 100 1-153 125-225 (340)
91 TIGR02143 trmA_only tRNA (urac 96.9 0.0021 4.5E-08 70.0 7.8 54 1-65 204-257 (353)
92 PLN03075 nicotianamine synthas 96.9 0.0058 1.3E-07 65.1 10.6 100 3-151 132-233 (296)
93 TIGR00095 RNA methyltransferas 96.8 0.0038 8.2E-08 62.2 8.1 74 1-101 56-130 (189)
94 PF05958 tRNA_U5-meth_tr: tRNA 96.8 0.0021 4.6E-08 70.0 6.7 90 1-106 203-292 (352)
95 PHA03412 putative methyltransf 96.8 0.0054 1.2E-07 63.4 9.2 106 1-149 56-161 (241)
96 PF01269 Fibrillarin: Fibrilla 96.8 0.0058 1.3E-07 62.5 9.0 116 2-170 81-200 (229)
97 COG4123 Predicted O-methyltran 96.8 0.01 2.2E-07 61.8 11.0 130 1-171 51-186 (248)
98 PRK15451 tRNA cmo(5)U34 methyl 96.8 0.011 2.3E-07 61.0 11.1 100 2-152 64-165 (247)
99 PF13649 Methyltransf_25: Meth 96.8 0.0031 6.8E-08 55.5 6.2 98 1-145 4-101 (101)
100 PRK00811 spermidine synthase; 96.8 0.011 2.3E-07 62.6 11.3 119 2-169 84-207 (283)
101 COG2890 HemK Methylase of poly 96.7 0.022 4.8E-07 60.2 13.1 140 1-179 117-261 (280)
102 PRK04457 spermidine synthase; 96.7 0.012 2.6E-07 61.5 10.8 122 3-172 75-197 (262)
103 PF01170 UPF0020: Putative RNA 96.7 0.015 3.2E-07 57.5 10.8 115 2-153 36-151 (179)
104 PF02390 Methyltransf_4: Putat 96.6 0.0067 1.4E-07 60.8 7.8 131 1-178 24-157 (195)
105 PRK11207 tellurite resistance 96.6 0.017 3.7E-07 57.6 10.6 98 1-151 37-134 (197)
106 PRK15001 SAM-dependent 23S rib 96.6 0.034 7.3E-07 61.4 13.6 123 1-177 235-360 (378)
107 PRK01581 speE spermidine synth 96.5 0.013 2.9E-07 64.1 10.2 129 27-199 174-312 (374)
108 PRK00216 ubiE ubiquinone/menaq 96.5 0.02 4.4E-07 57.2 10.9 103 1-154 58-161 (239)
109 COG0275 Predicted S-adenosylme 96.5 0.034 7.4E-07 59.2 12.9 176 4-215 33-300 (314)
110 PLN02396 hexaprenyldihydroxybe 96.5 0.024 5.1E-07 61.3 12.0 96 2-151 139-235 (322)
111 KOG1099 SAM-dependent methyltr 96.5 0.01 2.2E-07 60.9 8.2 130 1-176 48-185 (294)
112 PLN02589 caffeoyl-CoA O-methyl 96.4 0.011 2.4E-07 61.5 8.4 87 26-151 103-190 (247)
113 PF01795 Methyltransf_5: MraW 96.4 0.0036 7.7E-08 67.1 4.9 180 3-215 29-298 (310)
114 COG0293 FtsJ 23S rRNA methylas 96.4 0.013 2.9E-07 59.2 8.6 130 1-176 52-181 (205)
115 PRK03612 spermidine synthase; 96.4 0.013 2.9E-07 67.1 9.5 118 28-186 322-449 (521)
116 KOG2904 Predicted methyltransf 96.4 0.03 6.6E-07 58.9 11.2 141 1-169 155-301 (328)
117 TIGR01934 MenG_MenH_UbiE ubiqu 96.3 0.022 4.9E-07 56.3 9.8 101 1-154 46-146 (223)
118 PHA03411 putative methyltransf 96.3 0.04 8.7E-07 58.3 11.9 128 1-171 71-206 (279)
119 PRK15068 tRNA mo(5)U34 methylt 96.3 0.07 1.5E-06 57.5 13.7 98 2-153 130-228 (322)
120 COG0220 Predicted S-adenosylme 96.2 0.018 3.9E-07 59.3 8.3 119 2-167 56-174 (227)
121 PRK01683 trans-aconitate 2-met 96.1 0.027 5.9E-07 57.8 9.6 93 1-151 38-130 (258)
122 TIGR00417 speE spermidine synt 96.1 0.037 8E-07 57.9 10.4 102 27-168 96-201 (270)
123 PRK05134 bifunctional 3-demeth 96.1 0.031 6.7E-07 56.5 9.4 101 1-155 55-155 (233)
124 TIGR00740 methyltransferase, p 96.0 0.046 1E-06 55.7 10.6 100 2-151 61-161 (239)
125 PRK10258 biotin biosynthesis p 96.0 0.029 6.2E-07 57.5 8.9 93 1-152 49-141 (251)
126 PLN02336 phosphoethanolamine N 96.0 0.059 1.3E-06 60.6 12.1 116 1-170 273-388 (475)
127 KOG2915 tRNA(1-methyladenosine 96.0 0.057 1.2E-06 56.8 10.8 118 4-178 115-235 (314)
128 COG4076 Predicted RNA methylas 96.0 0.0083 1.8E-07 59.9 4.4 78 28-148 55-132 (252)
129 TIGR00452 methyltransferase, p 95.9 0.1 2.2E-06 56.2 13.0 102 2-158 129-232 (314)
130 TIGR01983 UbiG ubiquinone bios 95.9 0.042 9E-07 55.0 9.2 100 1-153 52-151 (224)
131 KOG1596 Fibrillarin and relate 95.9 0.023 4.9E-07 58.8 7.2 114 3-169 165-282 (317)
132 TIGR02072 BioC biotin biosynth 95.6 0.046 9.9E-07 54.5 8.4 94 2-151 42-135 (240)
133 KOG1540 Ubiquinone biosynthesi 95.6 0.11 2.5E-06 54.2 11.0 121 1-170 107-230 (296)
134 PTZ00098 phosphoethanolamine N 95.5 0.055 1.2E-06 56.5 8.9 97 2-152 60-157 (263)
135 smart00828 PKS_MT Methyltransf 95.5 0.21 4.6E-06 50.0 12.7 98 2-152 7-105 (224)
136 TIGR00477 tehB tellurite resis 95.5 0.095 2.1E-06 52.1 10.0 96 2-151 38-133 (195)
137 PF02384 N6_Mtase: N-6 DNA Met 95.5 0.055 1.2E-06 57.3 8.8 145 1-169 53-204 (311)
138 PLN02672 methionine S-methyltr 95.4 0.086 1.9E-06 65.0 11.3 138 1-171 125-295 (1082)
139 PRK12335 tellurite resistance 95.3 0.13 2.9E-06 54.2 10.8 94 2-149 128-221 (287)
140 TIGR02716 C20_methyl_CrtF C-20 95.2 0.18 3.9E-06 53.5 11.6 106 1-159 156-262 (306)
141 KOG1663 O-methyltransferase [S 95.2 0.077 1.7E-06 54.6 8.2 86 26-151 97-183 (237)
142 PRK00050 16S rRNA m(4)C1402 me 94.9 0.031 6.8E-07 59.7 4.9 78 1-105 26-103 (296)
143 PRK14103 trans-aconitate 2-met 94.9 0.086 1.9E-06 54.3 8.0 89 2-150 37-125 (255)
144 COG2264 PrmA Ribosomal protein 94.8 0.35 7.7E-06 51.8 12.3 103 26-179 184-286 (300)
145 PLN02366 spermidine synthase 94.7 0.24 5.1E-06 53.3 10.9 85 28-149 116-204 (308)
146 PLN02823 spermine synthase 94.5 0.2 4.4E-06 54.5 10.0 90 27-153 127-222 (336)
147 PF08242 Methyltransf_12: Meth 94.3 0.028 6E-07 49.0 2.4 95 3-147 5-99 (99)
148 COG2813 RsmC 16S RNA G1207 met 94.3 0.35 7.5E-06 51.8 10.9 108 25-178 180-287 (300)
149 PRK06922 hypothetical protein; 94.3 0.23 5E-06 58.2 10.3 114 2-154 426-540 (677)
150 PLN02490 MPBQ/MSBQ methyltrans 94.3 0.17 3.8E-06 55.1 8.8 95 1-150 120-214 (340)
151 smart00650 rADc Ribosomal RNA 94.3 0.12 2.6E-06 50.0 6.8 67 1-101 20-86 (169)
152 PF05401 NodS: Nodulation prot 94.2 0.22 4.7E-06 50.4 8.6 128 3-185 52-186 (201)
153 PRK01544 bifunctional N5-gluta 94.1 0.17 3.7E-06 57.9 8.8 130 1-178 354-485 (506)
154 KOG2671 Putative RNA methylase 94.1 0.088 1.9E-06 57.0 5.9 104 27-150 230-353 (421)
155 PF01861 DUF43: Protein of unk 94.1 0.37 8E-06 50.1 10.2 102 27-171 67-170 (243)
156 COG2227 UbiG 2-polyprenyl-3-me 94.0 0.098 2.1E-06 54.2 5.9 82 28-153 82-163 (243)
157 TIGR02987 met_A_Alw26 type II 93.9 0.39 8.5E-06 55.0 11.3 162 1-179 38-225 (524)
158 PF02005 TRM: N2,N2-dimethylgu 93.8 0.11 2.3E-06 57.4 6.2 96 3-153 58-155 (377)
159 PRK11705 cyclopropane fatty ac 93.8 0.35 7.7E-06 53.4 10.2 97 1-154 174-270 (383)
160 TIGR03438 probable methyltrans 93.7 0.42 9.1E-06 50.9 10.3 114 1-166 70-189 (301)
161 PF01564 Spermine_synth: Sperm 93.7 0.13 2.7E-06 53.5 6.0 103 27-169 100-207 (246)
162 COG1889 NOP1 Fibrillarin-like 93.6 0.53 1.1E-05 47.9 9.9 126 2-181 84-214 (231)
163 PF02353 CMAS: Mycolic acid cy 92.8 0.8 1.7E-05 48.4 10.6 99 3-155 71-170 (273)
164 PRK10742 putative methyltransf 92.8 0.23 5E-06 51.8 6.4 69 2-101 96-173 (250)
165 smart00138 MeTrc Methyltransfe 92.2 0.88 1.9E-05 47.7 10.0 24 128-151 219-242 (264)
166 PF06325 PrmA: Ribosomal prote 92.0 0.52 1.1E-05 50.5 8.0 98 26-179 183-281 (295)
167 TIGR02021 BchM-ChlM magnesium 91.8 1 2.2E-05 45.2 9.6 53 1-64 62-115 (219)
168 PF01189 Nol1_Nop2_Fmu: NOL1/N 91.7 0.00059 1.3E-08 72.1 -14.5 66 96-161 1-66 (283)
169 PF13578 Methyltransf_24: Meth 91.5 0.18 3.8E-06 44.7 3.3 98 4-150 6-104 (106)
170 PLN02336 phosphoethanolamine N 91.2 0.98 2.1E-05 50.8 9.6 98 1-151 44-142 (475)
171 PF02527 GidB: rRNA small subu 91.1 0.47 1E-05 47.4 6.2 80 26-153 71-150 (184)
172 PF10354 DUF2431: Domain of un 91.0 6.1 0.00013 38.8 13.6 78 90-179 73-150 (166)
173 KOG2899 Predicted methyltransf 90.5 0.94 2E-05 47.3 7.8 38 3-49 67-104 (288)
174 PTZ00338 dimethyladenosine tra 90.0 0.83 1.8E-05 48.8 7.3 66 2-101 44-110 (294)
175 PRK11088 rrmA 23S rRNA methylt 89.9 1.7 3.8E-05 45.3 9.5 54 2-66 93-146 (272)
176 KOG1271 Methyltransferases [Ge 89.8 1.7 3.6E-05 43.8 8.5 92 27-158 91-188 (227)
177 TIGR03840 TMPT_Se_Te thiopurin 89.3 1.4 3E-05 44.8 8.0 24 131-154 132-155 (213)
178 PF03848 TehB: Tellurite resis 88.3 2 4.2E-05 43.4 8.1 95 2-151 38-133 (192)
179 PRK11760 putative 23S rRNA C24 88.1 0.96 2.1E-05 49.5 6.1 64 1-103 218-281 (357)
180 cd00315 Cyt_C5_DNA_methylase C 87.7 0.81 1.8E-05 48.2 5.2 76 1-111 6-81 (275)
181 TIGR00006 S-adenosyl-methyltra 87.4 0.88 1.9E-05 49.0 5.3 77 3-105 29-105 (305)
182 PLN02232 ubiquinone biosynthes 86.7 2.6 5.7E-05 40.5 7.7 80 32-154 2-84 (160)
183 PRK14896 ksgA 16S ribosomal RN 86.5 1.7 3.7E-05 45.2 6.8 65 1-101 36-100 (258)
184 PRK11727 23S rRNA mA1618 methy 86.2 4.3 9.4E-05 44.0 9.8 59 27-102 138-199 (321)
185 PRK11783 rlmL 23S rRNA m(2)G24 86.1 6.6 0.00014 47.0 12.2 90 28-151 257-347 (702)
186 COG4262 Predicted spermidine s 85.8 3.3 7.2E-05 45.7 8.5 101 6-150 298-406 (508)
187 PF06962 rRNA_methylase: Putat 84.9 9.1 0.0002 36.8 10.2 108 29-169 1-112 (140)
188 COG0357 GidB Predicted S-adeno 84.9 1.6 3.5E-05 44.7 5.5 75 26-148 90-165 (215)
189 PF13489 Methyltransf_23: Meth 84.9 2 4.4E-05 39.8 5.8 24 131-154 95-118 (161)
190 PRK07580 Mg-protoporphyrin IX 84.0 6.5 0.00014 39.3 9.4 49 2-61 71-120 (230)
191 KOG2730 Methylase [General fun 83.2 1.2 2.5E-05 46.1 3.5 81 3-111 103-184 (263)
192 KOG1253 tRNA methyltransferase 82.2 1.6 3.5E-05 49.6 4.5 83 27-153 134-217 (525)
193 PF05430 Methyltransf_30: S-ad 81.8 2.7 5.7E-05 39.5 5.2 57 91-173 49-105 (124)
194 COG4106 Tam Trans-aconitate me 81.6 3.5 7.5E-05 42.6 6.2 90 2-149 38-127 (257)
195 KOG1270 Methyltransferases [Co 81.6 5.2 0.00011 42.4 7.7 21 131-151 175-195 (282)
196 COG0421 SpeE Spermidine syntha 81.1 3.8 8.3E-05 43.7 6.7 89 27-153 100-192 (282)
197 PF12147 Methyltransf_20: Puta 81.1 23 0.00051 38.2 12.4 125 1-171 142-267 (311)
198 PRK13255 thiopurine S-methyltr 80.5 13 0.00027 38.1 10.0 26 129-154 133-158 (218)
199 COG2230 Cfa Cyclopropane fatty 80.3 12 0.00026 40.0 10.0 99 3-155 81-180 (283)
200 COG2521 Predicted archaeal met 80.1 1.7 3.6E-05 45.4 3.4 122 2-171 142-269 (287)
201 COG3963 Phospholipid N-methylt 79.8 5.8 0.00013 39.5 6.9 102 3-153 57-158 (194)
202 COG1867 TRM1 N2,N2-dimethylgua 79.5 3.8 8.3E-05 45.1 6.1 95 29-171 78-173 (380)
203 PF00107 ADH_zinc_N: Zinc-bind 78.7 5.6 0.00012 35.9 6.2 90 6-154 3-92 (130)
204 PRK00274 ksgA 16S ribosomal RN 78.7 4 8.8E-05 42.8 5.9 52 1-66 49-100 (272)
205 COG1064 AdhP Zn-dependent alco 78.2 6.1 0.00013 43.3 7.2 81 5-150 178-258 (339)
206 COG0116 Predicted N6-adenine-s 78.1 16 0.00035 40.7 10.4 90 29-153 256-346 (381)
207 PF10237 N6-adenineMlase: Prob 77.7 4.1 8.9E-05 40.0 5.2 51 91-167 85-135 (162)
208 COG0286 HsdM Type I restrictio 76.8 38 0.00082 38.9 13.5 145 2-169 194-346 (489)
209 TIGR00755 ksgA dimethyladenosi 76.4 6 0.00013 40.9 6.4 53 1-66 36-88 (253)
210 KOG2187 tRNA uracil-5-methyltr 76.2 4.1 8.9E-05 46.6 5.3 101 2-155 391-493 (534)
211 KOG4300 Predicted methyltransf 75.0 14 0.00031 38.0 8.3 82 26-150 98-181 (252)
212 PLN02585 magnesium protoporphy 71.0 12 0.00025 40.6 7.1 39 1-50 151-189 (315)
213 PRK06202 hypothetical protein; 70.2 15 0.00032 37.2 7.4 42 1-47 67-108 (232)
214 TIGR01444 fkbM_fam methyltrans 69.4 15 0.00032 33.8 6.7 51 2-61 6-56 (143)
215 PF05219 DREV: DREV methyltran 69.2 19 0.0004 38.2 7.9 87 2-151 102-188 (265)
216 KOG1098 Putative SAM-dependent 68.4 5.7 0.00012 46.4 4.2 122 1-168 51-172 (780)
217 PF00891 Methyltransf_2: O-met 67.2 22 0.00048 36.1 8.0 101 4-164 110-212 (241)
218 COG0030 KsgA Dimethyladenosine 67.2 14 0.00031 39.0 6.6 66 3-101 39-104 (259)
219 PF13636 Nol1_Nop2_Fmu_2: pre- 65.7 6.1 0.00013 35.6 3.1 70 472-561 11-80 (102)
220 KOG1661 Protein-L-isoaspartate 64.2 31 0.00067 35.7 8.1 91 3-150 91-192 (237)
221 PF05185 PRMT5: PRMT5 arginine 63.6 11 0.00023 42.9 5.3 99 27-167 214-315 (448)
222 KOG3420 Predicted RNA methylas 63.6 8.3 0.00018 37.7 3.7 78 27-150 71-148 (185)
223 PF05724 TPMT: Thiopurine S-me 63.5 7.3 0.00016 39.9 3.6 87 28-154 60-158 (218)
224 PRK05785 hypothetical protein; 62.5 34 0.00074 34.9 8.3 34 1-44 58-91 (226)
225 PF04816 DUF633: Family of unk 62.3 97 0.0021 31.5 11.4 100 27-178 21-121 (205)
226 TIGR03587 Pse_Me-ase pseudamin 62.3 16 0.00034 36.8 5.7 49 2-64 51-99 (204)
227 PRK11524 putative methyltransf 61.9 13 0.00028 39.3 5.2 57 91-154 26-82 (284)
228 PF00398 RrnaAD: Ribosomal RNA 59.8 12 0.00027 39.0 4.6 51 3-66 39-89 (262)
229 PF00145 DNA_methylase: C-5 cy 59.2 24 0.00053 36.8 6.7 123 1-168 6-128 (335)
230 TIGR00478 tly hemolysin TlyA f 59.2 10 0.00023 39.1 3.9 28 1-38 82-109 (228)
231 PRK13256 thiopurine S-methyltr 56.8 38 0.00082 35.1 7.4 87 29-153 67-165 (226)
232 PRK01747 mnmC bifunctional tRN 56.6 18 0.0004 42.7 5.8 56 91-174 165-222 (662)
233 PF04989 CmcI: Cephalosporin h 55.6 19 0.00041 36.9 4.9 104 3-148 41-144 (206)
234 TIGR00675 dcm DNA-methyltransf 55.0 18 0.0004 38.8 5.1 76 1-112 4-79 (315)
235 PF01739 CheR: CheR methyltran 54.7 13 0.00029 37.4 3.7 43 90-152 134-176 (196)
236 PRK00536 speE spermidine synth 54.7 54 0.0012 34.7 8.3 89 29-170 96-188 (262)
237 PF08003 Methyltransf_9: Prote 53.4 98 0.0021 33.7 10.0 42 91-154 181-222 (315)
238 COG1352 CheR Methylase of chem 52.6 18 0.00038 38.4 4.3 40 91-150 201-240 (268)
239 PRK10309 galactitol-1-phosphat 52.6 29 0.00062 37.0 6.1 17 134-150 243-259 (347)
240 PF03291 Pox_MCEL: mRNA cappin 51.8 52 0.0011 35.9 7.9 24 131-154 166-189 (331)
241 PF01555 N6_N4_Mtase: DNA meth 51.0 37 0.00081 33.2 6.2 80 93-178 1-80 (231)
242 KOG4589 Cell division protein 47.6 2.2E+02 0.0048 29.2 10.8 74 91-178 135-208 (232)
243 KOG2361 Predicted methyltransf 46.9 29 0.00063 36.5 4.7 25 26-50 96-120 (264)
244 TIGR00497 hsdM type I restrict 45.4 1.5E+02 0.0032 34.1 10.7 56 91-146 292-350 (501)
245 PF03059 NAS: Nicotianamine sy 44.9 87 0.0019 33.5 8.0 82 27-150 146-229 (276)
246 COG1063 Tdh Threonine dehydrog 44.1 53 0.0011 35.8 6.5 22 133-154 251-272 (350)
247 KOG3115 Methyltransferase-like 43.8 51 0.0011 34.0 5.8 108 3-152 69-184 (249)
248 TIGR02822 adh_fam_2 zinc-bindi 42.3 83 0.0018 33.5 7.6 17 134-150 237-253 (329)
249 PF01234 NNMT_PNMT_TEMT: NNMT/ 41.9 42 0.00091 35.4 5.1 51 127-179 175-237 (256)
250 PRK09880 L-idonate 5-dehydroge 41.6 75 0.0016 33.9 7.1 23 28-54 195-217 (343)
251 KOG3492 Ribosome biogenesis pr 41.3 86 0.0019 30.8 6.6 120 419-561 11-135 (180)
252 PF06080 DUF938: Protein of un 39.7 1.4E+02 0.003 30.6 8.3 125 2-169 33-163 (204)
253 TIGR03439 methyl_EasF probable 39.0 2.2E+02 0.0048 31.0 10.2 52 1-57 83-134 (319)
254 KOG2782 Putative SAM dependent 38.2 7.6 0.00016 40.2 -1.0 83 2-107 51-133 (303)
255 KOG0820 Ribosomal RNA adenine 36.0 85 0.0018 33.8 6.2 50 4-64 68-118 (315)
256 KOG3191 Predicted N6-DNA-methy 35.7 1.1E+02 0.0024 31.1 6.6 132 3-171 52-185 (209)
257 PRK05599 hypothetical protein; 34.6 2E+02 0.0042 29.1 8.6 55 3-65 7-61 (246)
258 cd08293 PTGR2 Prostaglandin re 34.1 1.1E+02 0.0025 32.1 7.1 15 134-148 237-251 (345)
259 COG1189 Predicted rRNA methyla 33.9 78 0.0017 33.3 5.4 28 3-40 88-115 (245)
260 TIGR03451 mycoS_dep_FDH mycoth 33.3 69 0.0015 34.4 5.3 21 29-53 203-223 (358)
261 KOG2078 tRNA modification enzy 32.6 24 0.00053 39.8 1.7 39 28-66 272-312 (495)
262 PRK08339 short chain dehydroge 32.5 2.6E+02 0.0056 28.6 9.2 54 4-64 16-69 (263)
263 PRK12429 3-hydroxybutyrate deh 32.1 1.8E+02 0.0038 29.0 7.7 52 4-63 12-63 (258)
264 KOG0023 Alcohol dehydrogenase, 32.0 89 0.0019 34.4 5.7 44 5-62 193-237 (360)
265 PF10294 Methyltransf_16: Puta 31.5 1.5E+02 0.0033 28.9 6.9 33 27-60 69-104 (173)
266 KOG1227 Putative methyltransfe 31.2 28 0.00062 37.7 1.8 36 27-62 218-254 (351)
267 PRK12937 short chain dehydroge 29.9 2.6E+02 0.0055 27.6 8.4 129 4-154 13-142 (245)
268 PRK15052 D-tagatose-1,6-bispho 29.6 69 0.0015 36.2 4.5 43 422-465 201-245 (421)
269 COG1568 Predicted methyltransf 29.3 68 0.0015 34.6 4.1 96 28-165 176-273 (354)
270 TIGR02825 B4_12hDH leukotriene 29.1 1.4E+02 0.003 31.3 6.7 18 134-151 220-238 (325)
271 PF03721 UDPG_MGDP_dh_N: UDP-g 29.0 4.1E+02 0.0088 26.3 9.6 73 91-179 75-150 (185)
272 PRK13699 putative methylase; P 28.6 1.6E+02 0.0035 30.2 6.8 70 91-171 19-88 (227)
273 COG4555 NatA ABC-type Na+ tran 28.5 63 0.0014 33.5 3.7 42 92-154 151-193 (245)
274 COG3897 Predicted methyltransf 28.4 59 0.0013 33.3 3.4 50 1-61 86-135 (218)
275 PF04445 SAM_MT: Putative SAM- 27.2 1.2E+02 0.0026 31.7 5.6 54 28-101 98-160 (234)
276 TIGR00006 S-adenosyl-methyltra 26.9 1.3E+02 0.0028 32.7 5.9 74 131-215 220-293 (305)
277 PF14542 Acetyltransf_CG: GCN5 26.4 49 0.0011 28.3 2.1 51 91-171 23-73 (78)
278 KOG3010 Methyltransferase [Gen 26.3 1.5E+02 0.0032 31.4 6.0 38 133-171 118-157 (261)
279 PF07279 DUF1442: Protein of u 25.9 1.8E+02 0.0039 30.2 6.4 50 5-61 54-104 (218)
280 COG0270 Dcm Site-specific DNA 25.4 1.2E+02 0.0027 32.7 5.5 78 1-111 9-86 (328)
281 cd08237 ribitol-5-phosphate_DH 25.4 1.8E+02 0.004 31.0 6.8 19 134-152 239-257 (341)
282 PRK07904 short chain dehydroge 25.1 98 0.0021 31.5 4.5 58 2-65 14-72 (253)
283 PRK08085 gluconate 5-dehydroge 23.4 4.9E+02 0.011 26.0 9.2 53 4-64 17-69 (254)
284 COG4152 ABC-type uncharacteriz 23.3 2.2E+02 0.0048 30.5 6.6 93 91-204 147-255 (300)
285 PRK06181 short chain dehydroge 23.3 3.8E+02 0.0082 26.9 8.4 54 3-64 8-61 (263)
286 COG2961 ComJ Protein involved 23.2 1.4E+02 0.003 31.8 5.0 102 27-171 110-211 (279)
287 PF03141 Methyltransf_29: Puta 23.1 92 0.002 36.0 4.1 84 95-291 119-202 (506)
288 PF04378 RsmJ: Ribosomal RNA s 22.5 49 0.0011 34.7 1.7 50 4-64 65-114 (245)
289 PRK14891 50S ribosomal protein 22.0 96 0.0021 29.6 3.3 50 425-480 7-56 (131)
290 PRK15458 tagatose 6-phosphate 21.6 1.2E+02 0.0026 34.3 4.6 76 422-508 205-282 (426)
291 TIGR03366 HpnZ_proposed putati 21.5 1.7E+02 0.0038 30.1 5.6 17 134-150 201-217 (280)
292 TIGR02810 agaZ_gatZ D-tagatose 21.5 1.2E+02 0.0027 34.2 4.6 60 422-491 201-262 (420)
293 PF03657 UPF0113: Uncharacteri 21.4 28 0.0006 34.3 -0.4 70 449-533 38-109 (162)
294 PRK12939 short chain dehydroge 21.0 4E+02 0.0086 26.3 7.9 53 4-64 15-67 (250)
295 cd08230 glucose_DH Glucose deh 20.8 2.6E+02 0.0057 29.8 7.0 17 134-150 252-268 (355)
296 PRK07523 gluconate 5-dehydroge 20.4 4E+02 0.0087 26.6 7.9 53 4-64 18-70 (255)
297 PF00106 adh_short: short chai 20.2 3.9E+02 0.0085 24.6 7.2 88 4-109 8-97 (167)
No 1
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-51 Score=433.43 Aligned_cols=199 Identities=55% Similarity=0.919 Sum_probs=183.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||+||+|.+|...+ .|.|+|||.|.+|+++|+|+++|+..+++.|++||++.||++.+...
T Consensus 162 mCAAPG~Kt~qLLeal~~~~~-----~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~------- 229 (375)
T KOG2198|consen 162 MCAAPGGKTAQLLEALHKDPT-----RGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG------- 229 (375)
T ss_pred eccCCCccHHHHHHHHhcCCC-----CCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC-------
Confidence 899999999999999996432 68999999999999999999999999999999999999999865311
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccc-cCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK-WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~k-ws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
...+..+|||||||||||||||+|+++++|+. |+.....+||.+|.+||+||+++||+||+|||||||+||+||
T Consensus 230 -----~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 230 -----NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred -----chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 12345899999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceEEEeCCCcCCccccCCCccccccccCCc-cccchhhHHhhhhc
Q 006372 160 EAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI-WLASHKHVRKFRRI 216 (648)
Q Consensus 160 EaVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~W~v~~~~~-~~~~~~~~~~~~~~ 216 (648)
|+||+++|++++++++|++++..||.+++.+|.+.|++.+++. |+.++.++|.....
T Consensus 305 EaVV~~~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~~~~~~vp~~~~~ 362 (375)
T KOG2198|consen 305 EAVVQEALQKVGGAVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWFTSPLEVPKLVAN 362 (375)
T ss_pred HHHHHHHHHHhcCcccceeeccccccceecCCCCcceEEecCcccccCccccccchhh
Confidence 9999999999999999999999999999999999999999764 88999999876543
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-48 Score=419.49 Aligned_cols=153 Identities=39% Similarity=0.620 Sum_probs=139.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||+||+++|.+. .+.|+|+|++.+|+.+|++|++|+|+.|+.++++|+..++....
T Consensus 163 ~cAAPGGKTthla~~~~~~-------~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~---------- 225 (355)
T COG0144 163 LCAAPGGKTTHLAELMENE-------GAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP---------- 225 (355)
T ss_pred ECCCCCCHHHHHHHhcCCC-------CceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc----------
Confidence 8999999999999999752 35669999999999999999999999999999999988765431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...+||+|||||||||+||+||+|++|++|++.++..|+.+|++||.+|+++|||||+|||||||++|+|||
T Consensus 226 --------~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 226 --------GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred --------ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 113699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeC
Q 006372 161 AVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd~ 179 (648)
+||.++|++++ .++++++
T Consensus 298 ~vV~~~L~~~~-~~~~~~~ 315 (355)
T COG0144 298 EVVERFLERHP-DFELEPV 315 (355)
T ss_pred HHHHHHHHhCC-Cceeecc
Confidence 99999999986 4666554
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2e-47 Score=422.18 Aligned_cols=321 Identities=24% Similarity=0.398 Sum_probs=236.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||+||+++|.+ +|.|+|||++.+|+..|+++++|+|+.|+.|++.|+..++...
T Consensus 120 ~CAAPGgKTt~la~~l~~--------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~----------- 180 (470)
T PRK11933 120 MAAAPGSKTTQIAALMNN--------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL----------- 180 (470)
T ss_pred eCCCccHHHHHHHHHcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhc-----------
Confidence 799999999999999864 6899999999999999999999999999999999987653211
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||+|||||||||+|++||+|+++++|++.++..++.+|++||.+|+++|||||+|||||||++|+|||
T Consensus 181 ---------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 181 ---------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred ---------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 14699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeCCCcCCccccCCCccccccccCCccccchhhHHhhhhccccCCCCCCCCCCCCcCCCCCCCC
Q 006372 161 AVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHG 240 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~ 240 (648)
+||+++|+++++.++++++....+ |.. .
T Consensus 252 ~vV~~~L~~~~~~~~~~~~~~~~~------~~~-------------------------------~--------------- 279 (470)
T PRK11933 252 AVCLWLKETYPDAVEFEPLGDLFP------GAE-------------------------------K--------------- 279 (470)
T ss_pred HHHHHHHHHCCCcEEecccccccc------ccc-------------------------------c---------------
Confidence 999999999876566655421111 100 0
Q ss_pred CccccCCcccchhhhccccccCchhhhhccccCCceEEEccccCCCCceEEEEEEEcCCCCccccccCCcccccCCCCCC
Q 006372 241 NVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDD 320 (648)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFiAvl~K~~~~~~~~~~~~~~~~~~~~~~~~ 320 (648)
......|+|++||.++|+|||||+|+|........ +..
T Consensus 280 -----------------------------~~~~~~~~r~~P~~~~~dGfFiA~lrk~~~~~~~~-----~~~-------- 317 (470)
T PRK11933 280 -----------------------------ALTEEGFLHVFPQIYDSEGFFVARLRKTASVPRLP-----APK-------- 317 (470)
T ss_pred -----------------------------ccCCCCeEEECCCCCCCcceeeEEEEecCCccccc-----ccc--------
Confidence 00134799999999999999999999975421100 000
Q ss_pred CCccccCCcccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccc
Q 006372 321 PPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKL 400 (648)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 400 (648)
...+|.
T Consensus 318 ------------------------------------------------------------------------~~~~k~-- 323 (470)
T PRK11933 318 ------------------------------------------------------------------------YKVGKF-- 323 (470)
T ss_pred ------------------------------------------------------------------------cccccc--
Confidence 000000
Q ss_pred cccCCcccCCCcccCC--ChhhHHHHHhHhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEE
Q 006372 401 QIQGKWKGIDPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITS 478 (648)
Q Consensus 401 ~~~~~~k~~dP~~f~~--d~~~~~~I~~fYgi~~~Fp~~~~lvtRn~~g~~~k~IYyvS~~vk~il~~N~~~g~~LKii~ 478 (648)
|+.-+. ..+.|....+-|+++.. ....++.++ ..||++-...... . .+|||+.
T Consensus 324 ----------~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~------~~l~~~p~~~~~~----~---~~l~v~r 378 (470)
T PRK11933 324 ----------PFTPAKDKEAQEIRQAAASVGLSWP--ENLRLWQRD------KEVWLFPAGIEPL----I---GKVRFSR 378 (470)
T ss_pred ----------cccccchhHHHHHHHHHHhcCCCCC--CCCcEEEEC------CEEEEeccccchh----h---cCCeEee
Confidence 000000 11234443444566532 223455444 3799988764231 1 4799999
Q ss_pred ceeeeEEEecCCCCCCcccceeeccCchhhhhhcccCcEEEcCHHHHHHHhhcCCCCcccCCChHHHHHHhcCCCceEEE
Q 006372 479 VGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVI 558 (648)
Q Consensus 479 ~GvK~F~Rq~~~~~~~~~c~~RI~qEGl~~l~p~i~kRiv~~~~~dl~~LL~~~~~~~~~~~d~e~~e~~~~l~~Gc~Vl 558 (648)
.|+.+=+-.. =+|..++.....+.+.-..+.+.++.++....|....+... +. ..-|-++|
T Consensus 379 ~Gl~lg~~kk--------~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Yl~ge~l~~~---~~--------~~~G~~lv 439 (470)
T PRK11933 379 IGIKLAETHK--------KGYRWQHEAVIALASPDNANAFELTPQEAEEWYMGRDIYPQ---TA--------PPAGEVIV 439 (470)
T ss_pred eceeEeeeec--------CCeeEcHHHHHHhCcccccceEecCHHHHHHHHCCCCccCC---CC--------CCCCEEEE
Confidence 9999976542 27888888887777766678999999999999987766543 11 12477777
Q ss_pred EEe
Q 006372 559 VLS 561 (648)
Q Consensus 559 ~~~ 561 (648)
.++
T Consensus 440 ~~~ 442 (470)
T PRK11933 440 TYQ 442 (470)
T ss_pred EEC
Confidence 665
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=1.8e-45 Score=384.06 Aligned_cols=152 Identities=43% Similarity=0.646 Sum_probs=136.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||+||+++|.+ .|.|+|+|++.+|+..|+.+++|+|..++.+++.|+..+...
T Consensus 92 ~CAapGgKt~~la~~~~~--------~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~------------ 151 (283)
T PF01189_consen 92 MCAAPGGKTTHLAELMGN--------KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK------------ 151 (283)
T ss_dssp SSCTTSHHHHHHHHHTTT--------TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH------------
T ss_pred cccCCCCceeeeeecccc--------hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc------------
Confidence 899999999999999864 699999999999999999999999999999998888764210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhcc----ccCcEEEEecccCCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL----KVGGRIVYSTCSMNP 156 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lL----k~GG~LVYSTCSl~p 156 (648)
.....||+||+||||||+|+++|+|++.+.|++.++..|+.+|++||.+|++++ ||||+|||||||++|
T Consensus 152 -------~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 152 -------KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp -------HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred -------ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 011359999999999999999999999778899999999999999999999999 999999999999999
Q ss_pred cccHHHHHHHHHhCCCceEEEeCC
Q 006372 157 VENEAVVAEILRKCEGSVELVDVS 180 (648)
Q Consensus 157 ~ENEaVV~~~L~~~~g~veLvd~s 180 (648)
+|||+||.+||++++ .++++++.
T Consensus 225 eENE~vV~~fl~~~~-~~~l~~~~ 247 (283)
T PF01189_consen 225 EENEEVVEKFLKRHP-DFELVPIP 247 (283)
T ss_dssp GGTHHHHHHHHHHST-SEEEECCE
T ss_pred HHHHHHHHHHHHhCC-CcEEEecc
Confidence 999999999999985 58887754
No 5
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=5e-44 Score=379.73 Aligned_cols=156 Identities=37% Similarity=0.552 Sum_probs=141.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||+|||++|++ +|.|+|||.+..|+..|+.|+.|||+.|.+++|+|+..||.-.+
T Consensus 248 mcAAPGGKTt~IAalMkn--------~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---------- 309 (460)
T KOG1122|consen 248 MCAAPGGKTTHIAALMKN--------TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---------- 309 (460)
T ss_pred hhcCCCchHHHHHHHHcC--------CceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc----------
Confidence 899999999999999986 79999999999999999999999999999999999998874221
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...|||||+||||||.|++.|.+.+...-+..++.+++.+|++||.+|++++++||+|||||||+.++|||
T Consensus 310 ---------~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 310 ---------PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ---------CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH
Confidence 13699999999999999999999883333567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeCCCcCC
Q 006372 161 AVVAEILRKCEGSVELVDVSNEVP 184 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd~s~~lP 184 (648)
+||+++|++++ .++|+++...++
T Consensus 381 ~vV~yaL~K~p-~~kL~p~~~~iG 403 (460)
T KOG1122|consen 381 AVVDYALKKRP-EVKLVPTGLDIG 403 (460)
T ss_pred HHHHHHHHhCC-ceEeccccccCC
Confidence 99999999986 689998865544
No 6
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=3.1e-40 Score=341.30 Aligned_cols=143 Identities=38% Similarity=0.620 Sum_probs=132.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
||||||+||++|++++.+ .|.|+|+|++.+|+..++++++|+|..++.+++.|+..++..
T Consensus 78 l~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------ 137 (264)
T TIGR00446 78 MAAAPGGKTTQISALMKN--------EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------ 137 (264)
T ss_pred ECCCchHHHHHHHHHcCC--------CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh------------
Confidence 799999999999998753 589999999999999999999999999999999998765321
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||+||+||||||+|+++++|++++.|++.++..|+.+|++||.+|+++|||||+|||||||++++|||
T Consensus 138 ---------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene 208 (264)
T TIGR00446 138 ---------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENE 208 (264)
T ss_pred ---------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHH
Confidence 13599999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 006372 161 AVVAEILRKCEG 172 (648)
Q Consensus 161 aVV~~~L~~~~g 172 (648)
+||+++|+++++
T Consensus 209 ~vv~~~l~~~~~ 220 (264)
T TIGR00446 209 AVVDYLLEKRPD 220 (264)
T ss_pred HHHHHHHHhCCC
Confidence 999999998864
No 7
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.8e-37 Score=338.55 Aligned_cols=150 Identities=31% Similarity=0.552 Sum_probs=136.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||+||++++.+ .|.|+|+|++.+|++.++++++|+|..++.+++.|+..++...
T Consensus 244 ~cagpGgkt~~la~~~~~--------~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~----------- 304 (431)
T PRK14903 244 TCAAPGGKTTAIAELMKD--------QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV----------- 304 (431)
T ss_pred eCCCccHHHHHHHHHcCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh-----------
Confidence 799999999999998753 6899999999999999999999999988999999987654210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||+|||||||||.|+++++|+++++|++.++..|+.+|++||.+|+++|||||+|||||||++|+|||
T Consensus 305 ---------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne 375 (431)
T PRK14903 305 ---------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENT 375 (431)
T ss_pred ---------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCH
Confidence 14699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeC
Q 006372 161 AVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd~ 179 (648)
+||.++|++++ .++++++
T Consensus 376 ~vv~~fl~~~~-~~~~~~~ 393 (431)
T PRK14903 376 EVVKRFVYEQK-DAEVIDI 393 (431)
T ss_pred HHHHHHHHhCC-CcEEecc
Confidence 99999999886 4566654
No 8
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.5e-35 Score=326.22 Aligned_cols=146 Identities=32% Similarity=0.518 Sum_probs=131.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
|||||||||++|++++.+ .|.|+|+|++..|++.++++++|+|..++.+++.|+..++....
T Consensus 259 l~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~---------- 320 (434)
T PRK14901 259 ACAAPGGKTTHIAELMGD--------QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP---------- 320 (434)
T ss_pred eCCCCchhHHHHHHHhCC--------CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc----------
Confidence 799999999999998753 68999999999999999999999999999999999877542100
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
.....||+||+||||||+|+++|+|++.++|++.++..|+.+|.+||.+|+++|||||+|||||||++|+|||
T Consensus 321 -------~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene 393 (434)
T PRK14901 321 -------QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE 393 (434)
T ss_pred -------cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHH
Confidence 0014699999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 006372 161 AVVAEILRKCE 171 (648)
Q Consensus 161 aVV~~~L~~~~ 171 (648)
+||.++|++++
T Consensus 394 ~~v~~~l~~~~ 404 (434)
T PRK14901 394 AQIEQFLARHP 404 (434)
T ss_pred HHHHHHHHhCC
Confidence 99999999864
No 9
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1e-34 Score=318.88 Aligned_cols=142 Identities=32% Similarity=0.475 Sum_probs=124.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEee--cccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN--HEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn--~Da~~~p~~~~~~~~~~~~ 78 (648)
|||||||||+++++++. .|.|+|+|++.+|++.++++++|+|.. +.++. .|+...+..
T Consensus 245 lcag~G~kt~~la~~~~---------~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~---------- 304 (426)
T TIGR00563 245 ACAAPGGKTTHILELAP---------QAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQW---------- 304 (426)
T ss_pred eCCCccHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecccccccccc----------
Confidence 79999999999999863 489999999999999999999999987 55533 343322110
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
.....||+||+||||||.|++|++|++++.|++.++..++.+|.+||.+|+++|||||+|||||||++|+|
T Consensus 305 ---------~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 305 ---------AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred ---------ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 01256999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCC
Q 006372 159 NEAVVAEILRKCE 171 (648)
Q Consensus 159 NEaVV~~~L~~~~ 171 (648)
||+||.++|++++
T Consensus 376 ne~~v~~~l~~~~ 388 (426)
T TIGR00563 376 NSEQIKAFLQEHP 388 (426)
T ss_pred CHHHHHHHHHhCC
Confidence 9999999999875
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.5e-34 Score=317.53 Aligned_cols=148 Identities=28% Similarity=0.440 Sum_probs=133.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||||+||.++++++.. .|.|+|+|+++.|+..++++++++|..++.+++.|+..++.
T Consensus 257 lgaG~G~kt~~la~~~~~--------~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~------------- 315 (445)
T PRK14904 257 LCAAPGGKSTFMAELMQN--------RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP------------- 315 (445)
T ss_pred ECCCCCHHHHHHHHHhCC--------CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-------------
Confidence 699999999999998753 57999999999999999999999999889999998876531
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||+||+||||||+|+++|+|++++.|++.++..|..+|.+||.+|+++|||||+|||||||++|+|||
T Consensus 316 ---------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene 386 (445)
T PRK14904 316 ---------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENE 386 (445)
T ss_pred ---------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHH
Confidence 14699999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeC
Q 006372 161 AVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd~ 179 (648)
+||.++|+++++ +++++.
T Consensus 387 ~~v~~~l~~~~~-~~~~~~ 404 (445)
T PRK14904 387 LQIEAFLQRHPE-FSAEPS 404 (445)
T ss_pred HHHHHHHHhCCC-CEEecc
Confidence 999999998763 555443
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.2e-33 Score=307.58 Aligned_cols=150 Identities=33% Similarity=0.526 Sum_probs=133.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
||||||+||.++++.+. +.|.|+|+|++..|+..++++++++|..++.+++.|+..++...
T Consensus 257 lgaG~G~~t~~la~~~~--------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~----------- 317 (444)
T PRK14902 257 ACAAPGGKTTHIAELLK--------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF----------- 317 (444)
T ss_pred eCCCCCHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh-----------
Confidence 79999999999999864 25899999999999999999999999988999999887643100
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||+||+||||||.|+++++|++.+.|++.++..|+.+|.+||.+|+++|||||+|||||||++++|||
T Consensus 318 ---------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene 388 (444)
T PRK14902 318 ---------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENE 388 (444)
T ss_pred ---------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhH
Confidence 14699999999999999999999997778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeC
Q 006372 161 AVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd~ 179 (648)
+||.++|++++ .++++++
T Consensus 389 ~vv~~~l~~~~-~~~~~~~ 406 (444)
T PRK14902 389 EVIEAFLEEHP-EFELVPL 406 (444)
T ss_pred HHHHHHHHhCC-CcEEecc
Confidence 99999999865 4677664
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=4.7e-31 Score=290.07 Aligned_cols=142 Identities=35% Similarity=0.488 Sum_probs=125.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||||+||.++++.+. .+.|+|+|.+++|+..++++++++|.. +.+++.|+..++...
T Consensus 251 lgaG~G~~t~~la~~~~---------~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~----------- 309 (427)
T PRK10901 251 ACAAPGGKTAHILELAP---------QAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWW----------- 309 (427)
T ss_pred eCCCCChHHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhc-----------
Confidence 69999999999999752 379999999999999999999999975 577888886543210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
....||+||+||||||.|+++++|++.+.+++.++..|..+|.+||.+|+++|||||+|||||||++++|||
T Consensus 310 --------~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene 381 (427)
T PRK10901 310 --------DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE 381 (427)
T ss_pred --------ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH
Confidence 124699999999999999999999996667888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 006372 161 AVVAEILRKCE 171 (648)
Q Consensus 161 aVV~~~L~~~~ 171 (648)
+||.++|++++
T Consensus 382 ~~v~~~l~~~~ 392 (427)
T PRK10901 382 QQIKAFLARHP 392 (427)
T ss_pred HHHHHHHHhCC
Confidence 99999999875
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.4e-26 Score=242.96 Aligned_cols=150 Identities=27% Similarity=0.353 Sum_probs=124.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||||.||+|++.+|.+ .|.|+|.|.+..|...|..+++..|+.++.....|+...+.
T Consensus 220 ~caapg~KTsH~a~i~~n--------~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~------------- 278 (413)
T KOG2360|consen 220 TCAAPGNKTSHLAAIMRN--------QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTAT------------- 278 (413)
T ss_pred eccccccchhhHHHHhhc--------cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCC-------------
Confidence 699999999999999975 69999999999999999999999999988877776544211
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccc--cccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW--RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~--~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
...+.....||||++|||+|+..+.-.+- ..-.+..+.+|...|..++.+|+.+.+. -+|||||||++.+|
T Consensus 279 ------~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~ree 351 (413)
T KOG2360|consen 279 ------PEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHREE 351 (413)
T ss_pred ------cccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCch-hheeeecchhhhhh
Confidence 12235678999999999999976554332 2335578899999999999999998777 89999999999999
Q ss_pred cHHHHHHHHHhCCCceEEEe
Q 006372 159 NEAVVAEILRKCEGSVELVD 178 (648)
Q Consensus 159 NEaVV~~~L~~~~g~veLvd 178 (648)
||.||+.+|...+...++..
T Consensus 352 ne~vv~d~l~~~p~~~~l~~ 371 (413)
T KOG2360|consen 352 NEQVVQEVLQQNPDAKRLAP 371 (413)
T ss_pred hhHHHHHHHhhChhHhhhch
Confidence 99999999998765555443
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.03 E-value=2.1e-09 Score=118.10 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=105.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC--cEEEeecccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~ 78 (648)
+||+.|+.+.+++. . +...|+++|.|+..+..+++|++++|.. ++.+.+.|+..+....
T Consensus 227 lfsgtG~~~l~aa~--~--------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~--------- 287 (396)
T PRK15128 227 CFSYTGGFAVSALM--G--------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTY--------- 287 (396)
T ss_pred eccCCCHHHHHHHh--C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHH---------
Confidence 69999998776532 2 2458999999999999999999999874 7888888876542100
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc--CCc
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNP 156 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS--l~p 156 (648)
......||.|++|||+-.... ..+.....--..|+..|+++|++||.|+++||| +..
T Consensus 288 --------~~~~~~fDlVilDPP~f~~~k-------------~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~ 346 (396)
T PRK15128 288 --------RDRGEKFDVIVMDPPKFVENK-------------SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS 346 (396)
T ss_pred --------HhcCCCCCEEEECCCCCCCCh-------------HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH
Confidence 001246999999999633210 112222334567888999999999999999999 777
Q ss_pred cccHHHHHHHHHhCCCceEEEeCCC
Q 006372 157 VENEAVVAEILRKCEGSVELVDVSN 181 (648)
Q Consensus 157 ~ENEaVV~~~L~~~~g~veLvd~s~ 181 (648)
++-.++|.++..+.+..++++....
T Consensus 347 ~~f~~~v~~aa~~~~~~~~~l~~~~ 371 (396)
T PRK15128 347 DLFQKIIADAAIDAGRDVQFIEQFR 371 (396)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEcC
Confidence 7788899999888888888887653
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.03 E-value=3.6e-09 Score=104.39 Aligned_cols=131 Identities=27% Similarity=0.332 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
|+.|+-|.+++ +++ |.|.|||+|.+.+|++++++|++|+|.+|+.|+..+|..+..
T Consensus 43 aGtGsi~iE~a-~~~--------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~--------------- 98 (187)
T COG2242 43 AGTGSITIEWA-LAG--------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP--------------- 98 (187)
T ss_pred CCccHHHHHHH-HhC--------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc---------------
Confidence 78999999998 544 589999999999999999999999999999999999876521
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHH
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAV 162 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaV 162 (648)
....||+|++- |.|.+ -.||..++.+||+||+||--.-++ ||++.
T Consensus 99 ------~~~~~daiFIG----Gg~~i----------------------~~ile~~~~~l~~ggrlV~naitl---E~~~~ 143 (187)
T COG2242 99 ------DLPSPDAIFIG----GGGNI----------------------EEILEAAWERLKPGGRLVANAITL---ETLAK 143 (187)
T ss_pred ------CCCCCCEEEEC----CCCCH----------------------HHHHHHHHHHcCcCCeEEEEeecH---HHHHH
Confidence 01269999994 33331 457999999999999999998888 99999
Q ss_pred HHHHHHhCCC-ceEEEeCCCcCCccccCCCccccc
Q 006372 163 VAEILRKCEG-SVELVDVSNEVPQLIHRPGLRKWK 196 (648)
Q Consensus 163 V~~~L~~~~g-~veLvd~s~~lP~l~~~pGl~~W~ 196 (648)
...++++.++ ++..+.++..-| ..+.+.|+
T Consensus 144 a~~~~~~~g~~ei~~v~is~~~~----lg~~~~~~ 174 (187)
T COG2242 144 ALEALEQLGGREIVQVQISRGKP----LGGGTMFR 174 (187)
T ss_pred HHHHHHHcCCceEEEEEeeccee----ccCeeEee
Confidence 9999999988 555566665433 34555554
No 16
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.86 E-value=2e-08 Score=109.83 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=105.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC--cEEEeecccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~ 78 (648)
+||..||.|.|+|.. +...|+.+|.|.+-+...++|++-.|.. .+..+.+|+..|..-
T Consensus 224 lFsYTGgfSv~Aa~g----------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~---------- 283 (393)
T COG1092 224 LFSYTGGFSVHAALG----------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK---------- 283 (393)
T ss_pred ecccCcHHHHHHHhc----------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHH----------
Confidence 589999999998552 2458999999999999999999988864 477888888776321
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
...+..+||.|++||| ++.+++. ..-+..+--.+|+..|+++|+|||++|.||||-+-..
T Consensus 284 -------~~~~g~~fDlIilDPP-----sF~r~k~--------~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 284 -------AERRGEKFDLIILDPP-----SFARSKK--------QEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred -------HHhcCCcccEEEECCc-----ccccCcc--------cchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 1122358999999999 3333333 2234566678999999999999999999999966655
Q ss_pred cH--HHHHHHHHhCCCceEEEeCC
Q 006372 159 NE--AVVAEILRKCEGSVELVDVS 180 (648)
Q Consensus 159 NE--aVV~~~L~~~~g~veLvd~s 180 (648)
++ ..|..++...+..++++...
T Consensus 344 ~~f~~~i~~a~~~~~~~~~~~~~~ 367 (393)
T COG1092 344 DLFLEIIARAAAAAGRRAQEIEGE 367 (393)
T ss_pred HHHHHHHHHHHHhcCCcEEEeecc
Confidence 54 67777777766667776543
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.74 E-value=1.2e-07 Score=94.26 Aligned_cols=124 Identities=22% Similarity=0.239 Sum_probs=94.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-CCcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||++|..+.+++..+. +.+.|+|+|.++.+++.+++++++++ ..++.+.+.|+..+...
T Consensus 47 lG~GtG~~s~~~a~~~~--------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----------- 107 (198)
T PRK00377 47 IGCGTGSVTVEASLLVG--------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----------- 107 (198)
T ss_pred eCCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-----------
Confidence 68999999999887753 25799999999999999999999999 46788888776543110
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
....||+|++... . . ....+|..+.++|||||++|+.+|++ ++
T Consensus 108 ---------~~~~~D~V~~~~~-----~----~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~---~~ 150 (198)
T PRK00377 108 ---------INEKFDRIFIGGG-----S----E----------------KLKEIISASWEIIKKGGRIVIDAILL---ET 150 (198)
T ss_pred ---------cCCCCCEEEECCC-----c----c----------------cHHHHHHHHHHHcCCCcEEEEEeecH---HH
Confidence 0146999998531 1 0 01457889999999999999999977 67
Q ss_pred HHHHHHHHHhCCCceEEEeCC
Q 006372 160 EAVVAEILRKCEGSVELVDVS 180 (648)
Q Consensus 160 EaVV~~~L~~~~g~veLvd~s 180 (648)
..-+..+|++.+-.++++.+.
T Consensus 151 ~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 151 VNNALSALENIGFNLEITEVI 171 (198)
T ss_pred HHHHHHHHHHcCCCeEEEEEe
Confidence 777888888776556665543
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.68 E-value=4e-07 Score=88.71 Aligned_cols=137 Identities=19% Similarity=0.163 Sum_probs=96.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|.-+..++.. ...|+++|.++..++.++++++..+. ++.+.+.|....+
T Consensus 26 lG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-------------- 79 (179)
T TIGR00537 26 IGAGTGLVAIRLKGK-----------GKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-------------- 79 (179)
T ss_pred eCCChhHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--------------
Confidence 478889888877653 12799999999999999999988775 5666766643321
Q ss_pred CcccccccccccccEEEEcCCCCCCC-ccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDG-TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdG-tlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
..+||.|++++|+-... ..+. +-|..+....+..-...+.++|.++.++|||||++++.+++. .+
T Consensus 80 ---------~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---~~ 145 (179)
T TIGR00537 80 ---------RGKFDVILFNPPYLPLEDDLRR--GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---NG 145 (179)
T ss_pred ---------CCcccEEEECCCCCCCcchhcc--cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc---CC
Confidence 13699999999984332 2221 122222222222234568899999999999999999999887 45
Q ss_pred HHHHHHHHHhCCCceEEE
Q 006372 160 EAVVAEILRKCEGSVELV 177 (648)
Q Consensus 160 EaVV~~~L~~~~g~veLv 177 (648)
+..+...|++.+-.++.+
T Consensus 146 ~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIV 163 (179)
T ss_pred hHHHHHHHHhCCCeEEEE
Confidence 677788888876544444
No 19
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.65 E-value=3.2e-07 Score=94.97 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=96.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|..+..++... +...|+|+|+|+.-++..+.|+++++. .+.+.|...+.. .
T Consensus 93 lg~GsG~i~l~la~~~---------~~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~----~-------- 148 (251)
T TIGR03704 93 LCCGSGAVGAALAAAL---------DGIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP----T-------- 148 (251)
T ss_pred ecCchHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc----h--------
Confidence 5899999999987763 234799999999999999999988763 455566433210 0
Q ss_pred CcccccccccccccEEEEcCCCCCCCcccc-CcccccccCc---chhhhhHHHHHHHHHHHhhccccCcEEEEecccCCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNV---GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 156 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk-~p~i~~kws~---~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p 156 (648)
.....||.|++||||...+.+.+ .|+....+.. ..+...-..+++|+..|.++|++||++++.+..-
T Consensus 149 -------~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-- 219 (251)
T TIGR03704 149 -------ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-- 219 (251)
T ss_pred -------hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--
Confidence 00146999999999998887765 3444222111 1223456789999999999999999999997643
Q ss_pred cccHHHHHHHHHhCCCc
Q 006372 157 VENEAVVAEILRKCEGS 173 (648)
Q Consensus 157 ~ENEaVV~~~L~~~~g~ 173 (648)
.-++ |..++++++-.
T Consensus 220 -~~~~-v~~~l~~~g~~ 234 (251)
T TIGR03704 220 -QAPL-AVEAFARAGLI 234 (251)
T ss_pred -hHHH-HHHHHHHCCCC
Confidence 3334 55566665533
No 20
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.64 E-value=2.4e-07 Score=99.26 Aligned_cols=111 Identities=21% Similarity=0.190 Sum_probs=86.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.||++|+.+..++.+ ...|+++|+|.+.+...+.|++++|..++.+.+.|+..+|..
T Consensus 189 p~cGtG~~lieaa~~-----------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~------------ 245 (329)
T TIGR01177 189 PFCGTGGFLIEAGLM-----------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS------------ 245 (329)
T ss_pred CCCCCCHHHHHHHHh-----------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc------------
Confidence 478999987665332 357999999999999999999999998888888888775421
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 156 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p 156 (648)
...||.|++||||....... ...+..++.++|..+.+.|||||++||.+++-..
T Consensus 246 ---------~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 246 ---------SESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred ---------cCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 15699999999985432211 1235577899999999999999999999987543
No 21
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=3.6e-07 Score=107.37 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=100.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC--cEEEeecccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~ 78 (648)
+||+.|+.+.+++.. +...|+++|.|+..++..++|++.+|.. ++.+++.|+..+...
T Consensus 545 lf~gtG~~sl~aa~~----------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~---------- 604 (702)
T PRK11783 545 LFAYTGTASVHAALG----------GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE---------- 604 (702)
T ss_pred cCCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----------
Confidence 589999999998753 1347999999999999999999999875 688888887654210
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
....||.|++|||.-+.+- +-.+ ......-...|+..++++|+|||.|++++|+-+-..
T Consensus 605 ----------~~~~fDlIilDPP~f~~~~--~~~~---------~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~ 663 (702)
T PRK11783 605 ----------AREQFDLIFIDPPTFSNSK--RMED---------SFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM 663 (702)
T ss_pred ----------cCCCcCEEEECCCCCCCCC--ccch---------hhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh
Confidence 0146999999999866431 1001 112344577899999999999999999999976554
Q ss_pred cHHHHHHHHHhCCCceEEEeCCC
Q 006372 159 NEAVVAEILRKCEGSVELVDVSN 181 (648)
Q Consensus 159 NEaVV~~~L~~~~g~veLvd~s~ 181 (648)
. ..++.+.+-.++++....
T Consensus 664 ~----~~~~~~~g~~~~~i~~~~ 682 (702)
T PRK11783 664 D----EEGLAKLGLKAEEITAKT 682 (702)
T ss_pred h----HHHHHhCCCeEEEEecCC
Confidence 3 556666666777776543
No 22
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.61 E-value=9.8e-08 Score=100.65 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=78.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC--cEEEeecccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~ 78 (648)
+||..||.+.+.+.. +...|+++|.|..-++..++|++..|.. .+..+..|+..+... +
T Consensus 130 lFsYTGgfsv~Aa~g----------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~-------- 190 (286)
T PF10672_consen 130 LFSYTGGFSVAAAAG----------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-L-------- 190 (286)
T ss_dssp ET-TTTHHHHHHHHT----------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-H--------
T ss_pred ecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-H--------
Confidence 489999999987541 2347999999999999999999988864 678888887654210 0
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
....+||.|+||||-=+-| +| .+.+-..+|+.+|+++|++||.|+.||||-+-..
T Consensus 191 ---------~~~~~fD~IIlDPPsF~k~----------~~------~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~ 245 (286)
T PF10672_consen 191 ---------KKGGRFDLIILDPPSFAKS----------KF------DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISP 245 (286)
T ss_dssp ---------HHTT-EEEEEE--SSEESS----------TC------EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-H
T ss_pred ---------hcCCCCCEEEECCCCCCCC----------HH------HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCH
Confidence 1135899999999943211 11 2344567899999999999999999999976665
Q ss_pred c
Q 006372 159 N 159 (648)
Q Consensus 159 N 159 (648)
+
T Consensus 246 ~ 246 (286)
T PF10672_consen 246 D 246 (286)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.57 E-value=1.8e-07 Score=83.79 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=82.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||+.|..+.+++... ...++++|+|+..+++.++++.+.+. .++.+.+.|...++..
T Consensus 7 ~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------- 65 (117)
T PF13659_consen 7 PGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------- 65 (117)
T ss_dssp ETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-----------
T ss_pred cCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-----------
Confidence 4899999999887763 36899999999999999999999987 5788999988765310
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
....+||.|++|||.......... ...+...++.++.++||+||++++.||.
T Consensus 66 --------~~~~~~D~Iv~npP~~~~~~~~~~--------------~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 66 --------LPDGKFDLIVTNPPYGPRSGDKAA--------------LRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp --------CTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred --------ccCceeEEEEECCCCccccccchh--------------hHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 112679999999998654221111 1115668899999999999999999984
No 24
>PRK14967 putative methyltransferase; Provisional
Probab=98.55 E-value=1.6e-06 Score=87.76 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=92.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|..+..++.. +.+.|+++|+++..+...++++++.+. ++.+.+.|...+.
T Consensus 43 lGcG~G~~~~~la~~----------~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~-------------- 97 (223)
T PRK14967 43 LCTGSGALAVAAAAA----------GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV-------------- 97 (223)
T ss_pred ecCCHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc--------------
Confidence 588999988887653 135899999999999999999988876 4666766653310
Q ss_pred CcccccccccccccEEEEcCC---CCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcc
Q 006372 81 GIESESNMGQLLFDRVLCDVP---CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 157 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvP---CSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ 157 (648)
....||.|++++| |+..+...+.+.. .|... ......+..++..+.++||+||++++.+-+++
T Consensus 98 --------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~-- 163 (223)
T PRK14967 98 --------EFRPFDVVVSNPPYVPAPPDAPPSRGPAR--AWDAG--PDGRAVLDRLCDAAPALLAPGGSLLLVQSELS-- 163 (223)
T ss_pred --------cCCCeeEEEECCCCCCCCcccccccChhH--hhhCC--CcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--
Confidence 1146999999975 6666655555544 23211 12234567899999999999999997655443
Q ss_pred ccHHHHHHHHHhCCCceEEE
Q 006372 158 ENEAVVAEILRKCEGSVELV 177 (648)
Q Consensus 158 ENEaVV~~~L~~~~g~veLv 177 (648)
+-.-+-..|++.+-.++.+
T Consensus 164 -~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 164 -GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred -CHHHHHHHHHHCCCCeEEE
Confidence 2223445566655444443
No 25
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.51 E-value=1.8e-06 Score=87.60 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=95.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|..+..++... +...|+++|+++..+...+.+++..+..++.+.+.|+....
T Consensus 94 ig~G~G~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------------- 150 (251)
T TIGR03534 94 LGTGSGAIALALAKER---------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL-------------- 150 (251)
T ss_pred EeCcHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC--------------
Confidence 4899999999998753 34689999999999999999999999888888888764310
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchh----hhhHHHHHHHHHHHhhccccCcEEEEecccCCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 156 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~----~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p 156 (648)
...+||.|+++||+...+.+..-......|.+... ..-...-..++.++.++|++||.+++.+ +.
T Consensus 151 --------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~-- 219 (251)
T TIGR03534 151 --------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GY-- 219 (251)
T ss_pred --------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Cc--
Confidence 01569999999999987765432221222222111 1112334678999999999999999863 32
Q ss_pred cccHHHHHHHHHhCC
Q 006372 157 VENEAVVAEILRKCE 171 (648)
Q Consensus 157 ~ENEaVV~~~L~~~~ 171 (648)
...+-+..+|++.+
T Consensus 220 -~~~~~~~~~l~~~g 233 (251)
T TIGR03534 220 -DQGEAVRALFEAAG 233 (251)
T ss_pred -cHHHHHHHHHHhCC
Confidence 23345666676654
No 26
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.32 E-value=1.3e-05 Score=84.39 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=95.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+|+++|..+..++... +...|+|+|+|+.-+...++|+++++.. ++.+.+.|.....
T Consensus 128 lG~GsG~i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------------- 185 (284)
T TIGR03533 128 LCTGSGCIAIACAYAF---------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------------- 185 (284)
T ss_pred EeCchhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-------------
Confidence 5899999999887753 3468999999999999999999999975 6888877753310
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchh----hhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~----~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
....||.|+++||+...+.+...+..+. +.|... ..-...+++|+..+.++|++||+++.-+..
T Consensus 186 ---------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-- 253 (284)
T TIGR03533 186 ---------PGRKYDLIVSNPPYVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-- 253 (284)
T ss_pred ---------CCCCccEEEECCCCCCccchhhCCHhhh-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--
Confidence 0136999999999988776643333222 333221 122357788999999999999999865542
Q ss_pred ccccHHHHHHHHHhCC
Q 006372 156 PVENEAVVAEILRKCE 171 (648)
Q Consensus 156 p~ENEaVV~~~L~~~~ 171 (648)
.. +-|..++...+
T Consensus 254 -~~--~~v~~~~~~~~ 266 (284)
T TIGR03533 254 -SM--EALEEAYPDVP 266 (284)
T ss_pred -CH--HHHHHHHHhCC
Confidence 22 35666666544
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.30 E-value=6.8e-06 Score=72.92 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=77.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
++|+.|.-+..++... +...|+|+|.|+..+..+++++.+.+. +++.+.+.|+ .+..
T Consensus 8 lGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~------------ 65 (112)
T PF12847_consen 8 LGCGTGRLSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP------------ 65 (112)
T ss_dssp ETTTTSHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT------------
T ss_pred EcCcCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc------------
Confidence 3689999999998843 257899999999999999999966554 7899999887 2110
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
.....||.|+++. -+... ...+ .-+.++|.+..++|+|||+||.+||
T Consensus 66 --------~~~~~~D~v~~~~-~~~~~----------------~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 66 --------DFLEPFDLVICSG-FTLHF----------------LLPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp --------TTSSCEEEEEECS-GSGGG----------------CCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred --------ccCCCCCEEEECC-Ccccc----------------ccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 0124699999976 21111 1112 5677889999999999999999998
No 28
>PTZ00146 fibrillarin; Provisional
Probab=98.30 E-value=9e-06 Score=86.03 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=66.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||||.+|.||+.++. ++|.|+|+|.++.-.+.|....++. +|+..+..|+.. |.. +
T Consensus 139 LGaG~G~~t~~lAdiVG--------~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~-p~~-y---------- 196 (293)
T PTZ00146 139 LGAASGTTVSHVSDLVG--------PEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY-PQK-Y---------- 196 (293)
T ss_pred eCCcCCHHHHHHHHHhC--------CCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC-hhh-h----------
Confidence 59999999999999874 3689999999965454455444322 677888888753 210 0
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHH-HHHhhccccCcEEEEe
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIVYS 150 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL-~~Al~lLk~GG~LVYS 150 (648)
. .....||.||+|+. .|+ |.+++ ..|.++|||||+++.+
T Consensus 197 --~----~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 197 --R----MLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred --h----cccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEEEEE
Confidence 0 00135999999984 121 44344 4678899999999884
No 29
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.25 E-value=5.8e-06 Score=88.16 Aligned_cols=132 Identities=15% Similarity=0.206 Sum_probs=93.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+|+++|..+..++... +...|+|+|+|+..+...++|+++++.. ++.+.+.|.....
T Consensus 140 lG~GsG~iai~la~~~---------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------------- 197 (307)
T PRK11805 140 LCTGSGCIAIACAYAF---------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------------- 197 (307)
T ss_pred EechhhHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-------------
Confidence 5899999998887652 3568999999999999999999999875 5888887753310
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchh-----hhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG-----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~-----~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|+++||+.+.+.+..-+..+. +.|... .+| ...+.|+..|.++|+|||++++-+
T Consensus 198 ---------~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg~dGl-~~~~~i~~~a~~~L~pgG~l~~E~--- 263 (307)
T PRK11805 198 ---------PGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGL-DLVRRILAEAPDYLTEDGVLVVEV--- 263 (307)
T ss_pred ---------CCCCccEEEECCCCCCccchhhcCHhhc-cCccceeeCCCchH-HHHHHHHHHHHHhcCCCCEEEEEE---
Confidence 0136999999999999877643333232 333221 123 577889999999999999998642
Q ss_pred CccccHHHHHHHHHhC
Q 006372 155 NPVENEAVVAEILRKC 170 (648)
Q Consensus 155 ~p~ENEaVV~~~L~~~ 170 (648)
... .+-|..++...
T Consensus 264 g~~--~~~~~~~~~~~ 277 (307)
T PRK11805 264 GNS--RVHLEEAYPDV 277 (307)
T ss_pred CcC--HHHHHHHHhhC
Confidence 222 22366666654
No 30
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.24 E-value=1.7e-05 Score=81.87 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|+++|..+..++..+ +...|+++|+++..+..++.+++.....++.+.+.|.....
T Consensus 115 iG~GsG~~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-------------- 171 (275)
T PRK09328 115 LGTGSGAIALALAKER---------PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-------------- 171 (275)
T ss_pred EcCcHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--------------
Confidence 4899999999888764 35789999999999999999988444467888877752210
Q ss_pred CcccccccccccccEEEEcCCCCCCCcccc-CcccccccCcch----hhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk-~p~i~~kws~~~----~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
....||.|++++|+...+.+.. .+++ ..+.+.. .......+..++..+.++|++||+++..+..
T Consensus 172 --------~~~~fD~Iv~npPy~~~~~~~~~~~~v-~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-- 240 (275)
T PRK09328 172 --------PGGRFDLIVSNPPYIPEADIHLLQPEV-RDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-- 240 (275)
T ss_pred --------CCCceeEEEECCCcCCcchhhhCCchh-hhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--
Confidence 0157999999999988876542 2222 1222221 2234467889999999999999999985422
Q ss_pred ccccHHHHHHHHHhCC
Q 006372 156 PVENEAVVAEILRKCE 171 (648)
Q Consensus 156 p~ENEaVV~~~L~~~~ 171 (648)
... +.+..++.+.+
T Consensus 241 -~~~-~~~~~~l~~~g 254 (275)
T PRK09328 241 -DQG-EAVRALLAAAG 254 (275)
T ss_pred -hHH-HHHHHHHHhCC
Confidence 222 34556666543
No 31
>PRK04266 fibrillarin; Provisional
Probab=98.20 E-value=1.6e-05 Score=81.31 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=69.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|+.|.+++..+. .|.|+|+|+++..++.+.+++++. +|+.+...|+.. |....
T Consensus 79 ~G~G~G~~~~~la~~v~---------~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~-~~~~~---------- 136 (226)
T PRK04266 79 LGAASGTTVSHVSDIVE---------EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK-PERYA---------- 136 (226)
T ss_pred EccCCCHHHHHHHHhcC---------CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC-cchhh----------
Confidence 58999999999988752 589999999999998887776653 677777777653 21000
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
.-...||.|++|.+ .| |. ...+|..+.++|||||++|-+
T Consensus 137 -------~l~~~~D~i~~d~~---------~p-----~~----------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 137 -------HVVEKVDVIYQDVA---------QP-----NQ----------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -------hccccCCEEEECCC---------Ch-----hH----------HHHHHHHHHHhcCCCcEEEEE
Confidence 00135999998865 11 10 133578899999999999885
No 32
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.20 E-value=8.1e-06 Score=81.65 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=86.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccc-ccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA-QHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da-~~~p~~~~~~~~~~~~~ 79 (648)
++|++|..|..|+... +.+.|+|+|.++..+..+++++++.+.+++.+.+.|+ ..++..
T Consensus 47 iGcGtG~~~~~la~~~---------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------- 106 (202)
T PRK00121 47 IGFGKGEFLVEMAKAN---------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------- 106 (202)
T ss_pred EccCCCHHHHHHHHHC---------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-----------
Confidence 4799999999998763 3468999999999999999999998888899998887 443311
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
.....||.|++..|. -|.+ .+.. .-...+..+|.++.++|||||+++++|+ +
T Consensus 107 --------~~~~~~D~V~~~~~~-----------p~~~-~~~~--~~~~~~~~~l~~i~~~LkpgG~l~i~~~------~ 158 (202)
T PRK00121 107 --------FPDGSLDRIYLNFPD-----------PWPK-KRHH--KRRLVQPEFLALYARKLKPGGEIHFATD------W 158 (202)
T ss_pred --------cCccccceEEEECCC-----------CCCC-cccc--ccccCCHHHHHHHHHHcCCCCEEEEEcC------C
Confidence 012469999986541 1111 0000 0111367889999999999999999885 4
Q ss_pred HHHHHHHHHh
Q 006372 160 EAVVAEILRK 169 (648)
Q Consensus 160 EaVV~~~L~~ 169 (648)
+..+.++++.
T Consensus 159 ~~~~~~~~~~ 168 (202)
T PRK00121 159 EGYAEYMLEV 168 (202)
T ss_pred HHHHHHHHHH
Confidence 4666665553
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.16 E-value=1.5e-05 Score=77.50 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=74.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|--+..++... +...|+|+|+++.-+...+.++++.+..++.+.+.|.....
T Consensus 38 lG~G~G~i~~~la~~~---------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-------------- 94 (170)
T PF05175_consen 38 LGCGSGVISLALAKRG---------PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-------------- 94 (170)
T ss_dssp ETSTTSHHHHHHHHTS---------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--------------
T ss_pred ecCChHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--------------
Confidence 4889998888887642 45689999999999999999999999988888887754321
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
...+||.|++.||....+ ..-...+.+++..|.++||+||+++.
T Consensus 95 --------~~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 95 --------PDGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp --------CTTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------cccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhccCCCEEEE
Confidence 126799999999921111 11234678899999999999998844
No 34
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.16 E-value=1.2e-05 Score=81.00 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++++|..|..|+.+.. ..|.|+++|.++..+...++++++++..|+.+...|+...+.
T Consensus 84 iG~GsG~~a~~la~~~~--------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~------------- 142 (215)
T TIGR00080 84 IGTGSGYQAAVLAEIVG--------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE------------- 142 (215)
T ss_pred ECCCccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-------------
Confidence 47899999999988753 257899999999999999999999999999999888754211
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
....||+|++++++.. ++...+++|++||+||..
T Consensus 143 --------~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 --------PLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred --------ccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEE
Confidence 1146999999976421 122346789999999975
No 35
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.15 E-value=2.4e-05 Score=76.90 Aligned_cols=123 Identities=23% Similarity=0.210 Sum_probs=76.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+||+.|.+++.... +.+.|+|+|+++.+ ..+++.+++.|....+.+. ..
T Consensus 39 iG~GtG~~~~~l~~~~~--------~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~--~l------- 90 (188)
T TIGR00438 39 LGAAPGGWSQVAVEQVG--------GKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLN--KI------- 90 (188)
T ss_pred ecCCCCHHHHHHHHHhC--------CCceEEEEeccccc-----------cCCCceEEEeeCCChhHHH--HH-------
Confidence 58999999999988753 25789999999864 2356667777654421100 00
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
. .......||.|++|+++...|. |+...... ...|..+|..++++|+|||+++... +.+.+-+
T Consensus 91 --~--~~~~~~~~D~V~~~~~~~~~g~----------~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~~--~~~~~~~ 153 (188)
T TIGR00438 91 --R--ERVGDDKVDVVMSDAAPNISGY----------WDIDHLRS-IDLVELALDIAKEVLKPKGNFVVKV--FQGEEID 153 (188)
T ss_pred --H--HHhCCCCccEEEcCCCCCCCCC----------ccccHHHH-HHHHHHHHHHHHHHccCCCEEEEEE--ccCccHH
Confidence 0 0011246999999986544442 33222222 2357889999999999999999864 3333333
Q ss_pred HHHHHHHHh
Q 006372 161 AVVAEILRK 169 (648)
Q Consensus 161 aVV~~~L~~ 169 (648)
+++ ..|++
T Consensus 154 ~~l-~~l~~ 161 (188)
T TIGR00438 154 EYL-NELRK 161 (188)
T ss_pred HHH-HHHHh
Confidence 444 44444
No 36
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.14 E-value=2.6e-05 Score=77.19 Aligned_cols=119 Identities=25% Similarity=0.270 Sum_probs=85.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccC-CCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF-PGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~-p~~~~~~~~~~~~~ 79 (648)
+||++|..|..++... +.+.|+|+|.++..++.+++++++++..++.+.+.|+... +.+
T Consensus 47 iG~G~G~~~~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----------- 106 (196)
T PRK07402 47 IGAGTGTIPVEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----------- 106 (196)
T ss_pred eCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC-----------
Confidence 4799999999887542 3579999999999999999999999988888888887431 110
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
...+|+|.+|.. . . ...+|..+.++|+|||++++.++++ |.
T Consensus 107 ----------~~~~d~v~~~~~----~----------~------------~~~~l~~~~~~LkpgG~li~~~~~~---~~ 147 (196)
T PRK07402 107 ----------APAPDRVCIEGG----R----------P------------IKEILQAVWQYLKPGGRLVATASSL---EG 147 (196)
T ss_pred ----------CCCCCEEEEECC----c----------C------------HHHHHHHHHHhcCCCeEEEEEeecH---HH
Confidence 123688887631 0 0 1457889999999999999999875 44
Q ss_pred HHHHHHHHHhCCC-ceEEEe
Q 006372 160 EAVVAEILRKCEG-SVELVD 178 (648)
Q Consensus 160 EaVV~~~L~~~~g-~veLvd 178 (648)
-..+..++++.+. .++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 148 LYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred HHHHHHHHHhcCCCCceEEE
Confidence 4556666665432 344443
No 37
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.12 E-value=3.5e-05 Score=69.10 Aligned_cols=97 Identities=25% Similarity=0.296 Sum_probs=74.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++++|..+..++..+ +.+.|+++|.++..++..++++++++..++.+...|+..++..
T Consensus 26 lG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------ 84 (124)
T TIGR02469 26 IGAGSGSITIEAARLV---------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED------------ 84 (124)
T ss_pred eCCCCCHHHHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh------------
Confidence 3679999999998763 3478999999999999999999999888888887776542110
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
...+||.|+++.+ + + .+.+++..+.++|||||+++-+.
T Consensus 85 --------~~~~~D~v~~~~~----------~--------------~-~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 --------SLPEPDRVFIGGS----------G--------------G-LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --------hcCCCCEEEECCc----------c--------------h-hHHHHHHHHHHHcCCCCEEEEEe
Confidence 0147999999642 0 0 12378999999999999998764
No 38
>PRK14968 putative methyltransferase; Provisional
Probab=98.11 E-value=5.9e-05 Score=72.95 Aligned_cols=134 Identities=19% Similarity=0.143 Sum_probs=89.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc--EEEeecccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n--v~vtn~Da~~~p~~~~~~~~~~~~ 78 (648)
++|+.|..+..++.. ...|+++|.++.-+...+.+++..+..+ +.+.+.|.....
T Consensus 30 ~G~G~G~~~~~l~~~-----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------------ 86 (188)
T PRK14968 30 VGTGSGIVAIVAAKN-----------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF------------ 86 (188)
T ss_pred EccccCHHHHHHHhh-----------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc------------
Confidence 468888888877664 2579999999999999999988877755 666666643210
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
....||.|++++|....+...+..+ |..+.......-......++.++.++||+||.+++..+++..
T Consensus 87 ----------~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~-- 153 (188)
T PRK14968 87 ----------RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG-- 153 (188)
T ss_pred ----------cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--
Confidence 0136999999999765443222111 222222222222345678899999999999999988887743
Q ss_pred cHHHHHHHHHhCC
Q 006372 159 NEAVVAEILRKCE 171 (648)
Q Consensus 159 NEaVV~~~L~~~~ 171 (648)
.+-+..++.+.+
T Consensus 154 -~~~l~~~~~~~g 165 (188)
T PRK14968 154 -EDEVLEYLEKLG 165 (188)
T ss_pred -HHHHHHHHHHCC
Confidence 234556666655
No 39
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.09 E-value=9.4e-06 Score=86.60 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=73.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|..+..++.. ...|+|+|.++..++..++++++++..++.+...|+..+...
T Consensus 180 l~cG~G~~sl~la~~-----------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~------------ 236 (315)
T PRK03522 180 LFCGVGGFGLHCATP-----------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA------------ 236 (315)
T ss_pred ccCCCCHHHHHHHhc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh------------
Confidence 589999999988762 258999999999999999999999998899999888665310
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|++|||++|.+.. +...+.-++| ++|||.+|.-
T Consensus 237 --------~~~~~D~Vv~dPPr~G~~~~-------------------------~~~~l~~~~~-~~ivyvsc~p 276 (315)
T PRK03522 237 --------QGEVPDLVLVNPPRRGIGKE-------------------------LCDYLSQMAP-RFILYSSCNA 276 (315)
T ss_pred --------cCCCCeEEEECCCCCCccHH-------------------------HHHHHHHcCC-CeEEEEECCc
Confidence 01359999999998765420 1122223455 6899999976
No 40
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.08 E-value=7e-05 Score=78.79 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=91.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+|+++|.-+..++... +...|+|+|+++..+...++|+++++..+ +.+...|.... +
T Consensus 121 lG~GsG~i~l~la~~~---------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~----------- 178 (284)
T TIGR00536 121 LGTGSGCIALALAYEF---------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--L----------- 178 (284)
T ss_pred EeccHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--C-----------
Confidence 5899999888887653 24689999999999999999999999864 77777765321 0
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchh----hhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~----~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
...+||.|+++||.-....+...++.. .|.|... ..=....++|+..|.++|++||.|++-++.-
T Consensus 179 ---------~~~~fDlIvsNPPyi~~~~~~~~~~~~-~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~- 247 (284)
T TIGR00536 179 ---------AGQKIDIIVSNPPYIDEEDLADLPNVV-RFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW- 247 (284)
T ss_pred ---------cCCCccEEEECCCCCCcchhhcCCccc-ccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-
Confidence 012699999999987665433223221 1333211 1122478889999999999999999887643
Q ss_pred ccccHHHHHHHHH
Q 006372 156 PVENEAVVAEILR 168 (648)
Q Consensus 156 p~ENEaVV~~~L~ 168 (648)
.-++| ..++.
T Consensus 248 --q~~~~-~~~~~ 257 (284)
T TIGR00536 248 --QQKSL-KELLR 257 (284)
T ss_pred --HHHHH-HHHHH
Confidence 33344 44454
No 41
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.06 E-value=5.3e-05 Score=74.36 Aligned_cols=111 Identities=23% Similarity=0.236 Sum_probs=83.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+..++... +.+.|+++|.++..+..+++++++++..++.+.+.|+... +
T Consensus 38 iG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---------- 94 (187)
T PRK08287 38 VGAGTGSVSIEAALQF---------PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---------- 94 (187)
T ss_pred ECCcCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c----------
Confidence 4789999999887752 3578999999999999999999999887888877665210 0
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||.|+++.. .+. + ..++..+.++|+|||+++++.... ++.
T Consensus 95 ---------~~~~D~v~~~~~---~~~------------------~----~~~l~~~~~~Lk~gG~lv~~~~~~---~~~ 137 (187)
T PRK08287 95 ---------PGKADAIFIGGS---GGN------------------L----TAIIDWSLAHLHPGGRLVLTFILL---ENL 137 (187)
T ss_pred ---------CcCCCEEEECCC---ccC------------------H----HHHHHHHHHhcCCCeEEEEEEecH---hhH
Confidence 146999998632 010 1 246788999999999999976543 777
Q ss_pred HHHHHHHHhCC
Q 006372 161 AVVAEILRKCE 171 (648)
Q Consensus 161 aVV~~~L~~~~ 171 (648)
.-+..++++.+
T Consensus 138 ~~~~~~l~~~g 148 (187)
T PRK08287 138 HSALAHLEKCG 148 (187)
T ss_pred HHHHHHHHHCC
Confidence 77778888876
No 42
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.86 E-value=5.2e-05 Score=75.29 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=80.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|+.|.-+.+++... |.+.|+++|.+...+.....++++.+..|+.+++.|+..++...+
T Consensus 23 iGcG~G~~~~~la~~~---------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~---------- 83 (194)
T TIGR00091 23 IGCGKGRFLIDMAKQN---------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF---------- 83 (194)
T ss_pred eCCCccHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC----------
Confidence 3688999999888652 467899999999999999999999998999999999876532111
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
....||.|++..| +-|.+-. ..... -++..+|..+.++|||||.|..+|
T Consensus 84 --------~~~~~d~v~~~~p-----------dpw~k~~-h~~~r--~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 84 --------PDGSLSKVFLNFP-----------DPWPKKR-HNKRR--ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred --------CCCceeEEEEECC-----------CcCCCCC-ccccc--cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 0136899999876 2232110 00001 125678999999999999998887
No 43
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.85 E-value=0.00017 Score=71.31 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=85.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+..++.+ . +.+.|+|+|.++..+.++++++++++..++.+.+.|+..++.
T Consensus 49 iGcGtG~~s~~la~~-~--------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~------------- 106 (181)
T TIGR00138 49 IGSGAGFPGIPLAIA-R--------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH------------- 106 (181)
T ss_pred ecCCCCccHHHHHHH-C--------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------------
Confidence 468888777777643 2 357899999999999999999999998889999888766420
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||.|++++ .+ + + ..++..+.++|+|||+++.. .....+
T Consensus 107 ---------~~~fD~I~s~~----~~----~--------------~----~~~~~~~~~~LkpgG~lvi~----~~~~~~ 147 (181)
T TIGR00138 107 ---------EEQFDVITSRA----LA----S--------------L----NVLLELTLNLLKVGGYFLAY----KGKKYL 147 (181)
T ss_pred ---------cCCccEEEehh----hh----C--------------H----HHHHHHHHHhcCCCCEEEEE----cCCCcH
Confidence 14699999863 00 0 0 13466678899999999976 455667
Q ss_pred HHHHHHHHhCC-CceEEEeC
Q 006372 161 AVVAEILRKCE-GSVELVDV 179 (648)
Q Consensus 161 aVV~~~L~~~~-g~veLvd~ 179 (648)
..+..+.+++- ..++.+++
T Consensus 148 ~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 148 DEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred HHHHHHHHhhhhcCceEeec
Confidence 77777777632 23666665
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.84 E-value=0.00018 Score=71.61 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=85.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+..++... +.+.|+++|.++..+...+++++.++..++.+.+.|+..++.
T Consensus 52 iGcGtG~~al~la~~~---------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------------- 109 (187)
T PRK00107 52 VGSGAGFPGIPLAIAR---------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------------- 109 (187)
T ss_pred EcCCCCHHHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------
Confidence 4789998888887642 357999999999999999999999998888888888766421
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||.|++.. .+ + + ..++..+.++|||||+++..-.. ..+
T Consensus 110 ---------~~~fDlV~~~~----~~----~--------------~----~~~l~~~~~~LkpGG~lv~~~~~----~~~ 150 (187)
T PRK00107 110 ---------EEKFDVVTSRA----VA----S--------------L----SDLVELCLPLLKPGGRFLALKGR----DPE 150 (187)
T ss_pred ---------CCCccEEEEcc----cc----C--------------H----HHHHHHHHHhcCCCeEEEEEeCC----ChH
Confidence 14699999852 00 0 1 24678899999999999988555 345
Q ss_pred HHHHHHHHhCCCce
Q 006372 161 AVVAEILRKCEGSV 174 (648)
Q Consensus 161 aVV~~~L~~~~g~v 174 (648)
..+..+.+..|..+
T Consensus 151 ~~l~~~~~~~~~~~ 164 (187)
T PRK00107 151 EEIAELPKALGGKV 164 (187)
T ss_pred HHHHHHHHhcCceE
Confidence 55666667666554
No 45
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.82 E-value=9.7e-05 Score=74.51 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=57.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++++|..|..+++++. +.|.|+++|+++.-+...+++++++|..++.+.+.|+...+.
T Consensus 83 IG~GsG~~t~~la~~~~--------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------------- 141 (212)
T PRK13942 83 IGTGSGYHAAVVAEIVG--------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------------- 141 (212)
T ss_pred ECCcccHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-------------
Confidence 46899999999988764 257999999999999999999999999899999998754210
Q ss_pred CcccccccccccccEEEEcC
Q 006372 81 GIESESNMGQLLFDRVLCDV 100 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDv 100 (648)
....||+|+++.
T Consensus 142 --------~~~~fD~I~~~~ 153 (212)
T PRK13942 142 --------ENAPYDRIYVTA 153 (212)
T ss_pred --------cCCCcCEEEECC
Confidence 114699999875
No 46
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.81 E-value=0.00012 Score=81.30 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=72.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCC-CcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP-GCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p-~~~~~~~~~~~~~ 79 (648)
+||+.|..+..|+.. ...|+|+|.++..++..++|++.++..|+.+...|+..+. ...
T Consensus 299 l~cG~G~~sl~la~~-----------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~---------- 357 (431)
T TIGR00479 299 AYCGVGTFTLPLAKQ-----------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP---------- 357 (431)
T ss_pred cCCCcCHHHHHHHHh-----------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH----------
Confidence 589999999998764 2479999999999999999999999999999998876531 100
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
.....||.|++|||.+|.. ..+|. ++..+++ +++||.+|.-
T Consensus 358 --------~~~~~~D~vi~dPPr~G~~------------------------~~~l~-~l~~l~~-~~ivyvsc~p 398 (431)
T TIGR00479 358 --------WAGQIPDVLLLDPPRKGCA------------------------AEVLR-TIIELKP-ERIVYVSCNP 398 (431)
T ss_pred --------hcCCCCCEEEECcCCCCCC------------------------HHHHH-HHHhcCC-CEEEEEcCCH
Confidence 0113599999999976532 11232 2334677 5689999963
No 47
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.81 E-value=0.00012 Score=75.96 Aligned_cols=110 Identities=27% Similarity=0.406 Sum_probs=80.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeeccccc--CCCcccCCCCCCCCC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH--FPGCRANKNFSSASD 79 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~--~p~~~~~~~~~~~~~ 79 (648)
.++|+-|..|+..+. |.|.|+..|.+..|++..+.+++++|.. ++.+.+.|... |+.
T Consensus 49 tGSG~lt~~l~r~v~--------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~------------ 108 (247)
T PF08704_consen 49 TGSGSLTHALARAVG--------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE------------ 108 (247)
T ss_dssp -TTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST------------
T ss_pred CCcHHHHHHHHHHhC--------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc------------
Confidence 478899999998875 5899999999999999999999999986 78898888542 210
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhcc-ccCcEE-EEecccCCcc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL-KVGGRI-VYSTCSMNPV 157 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lL-k~GG~L-VYSTCSl~p~ 157 (648)
.....||.|+||.| +| |. .|.+|.+.| |+||+| +||.|--
T Consensus 109 --------~~~~~~DavfLDlp---------~P--w~----------------~i~~~~~~L~~~gG~i~~fsP~ie--- 150 (247)
T PF08704_consen 109 --------ELESDFDAVFLDLP---------DP--WE----------------AIPHAKRALKKPGGRICCFSPCIE--- 150 (247)
T ss_dssp --------T-TTSEEEEEEESS---------SG--GG----------------GHHHHHHHE-EEEEEEEEEESSHH---
T ss_pred --------cccCcccEEEEeCC---------CH--HH----------------HHHHHHHHHhcCCceEEEECCCHH---
Confidence 00156999999999 33 22 278888899 899965 6887742
Q ss_pred ccHHHHHHHHHhCC
Q 006372 158 ENEAVVAEILRKCE 171 (648)
Q Consensus 158 ENEaVV~~~L~~~~ 171 (648)
-=.-.-.+|++++
T Consensus 151 -Qv~~~~~~L~~~g 163 (247)
T PF08704_consen 151 -QVQKTVEALREHG 163 (247)
T ss_dssp -HHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHCC
Confidence 2233345556654
No 48
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.73 E-value=0.00025 Score=59.40 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=72.6
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
++++|+.+.+++. . +...++++|.++......++.....+..++.+...|...+..
T Consensus 6 g~G~G~~~~~~~~--~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 61 (107)
T cd02440 6 GCGTGALALALAS--G--------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------------- 61 (107)
T ss_pred cCCccHHHHHHhc--C--------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--------------
Confidence 6788888887765 1 246899999999988888765444555667777776655421
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
.....||.|+++.+|... ...+..++..+.+++++||.++++
T Consensus 62 ------~~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 ------EADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ------ccCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 012569999999997543 456678899999999999999987
No 49
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.72 E-value=0.00021 Score=67.61 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=80.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|+.|--+..|+..+. +.+.|+++|.++.-+...+..+++++.+|+.+...|...++.. +
T Consensus 10 lGcG~G~~~~~l~~~~~--------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~---------- 70 (152)
T PF13847_consen 10 LGCGTGRLLIQLAKELN--------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L---------- 70 (152)
T ss_dssp ET-TTSHHHHHHHHHST--------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S----------
T ss_pred ecCcCcHHHHHHHHhcC--------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c----------
Confidence 36888999988886432 3578999999999999999999999999999999988775421 1
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
. ..||.|++..++ .| ...+..+|.++.++|++||+++.+.+.
T Consensus 71 --------~-~~~D~I~~~~~l--------------~~--------~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 --------E-EKFDIIISNGVL--------------HH--------FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --------S-TTEEEEEEESTG--------------GG--------TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------C-CCeeEEEEcCch--------------hh--------ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 0 579999999775 00 112246788999999999999988888
No 50
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.72 E-value=9.8e-05 Score=82.47 Aligned_cols=77 Identities=17% Similarity=0.090 Sum_probs=60.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|..|..|+.. .+.|+|+|.++.-+...+.|+++++..|+.+.+.|+..+..- .
T Consensus 304 lgcGtG~~sl~la~~-----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~-~---------- 361 (443)
T PRK13168 304 LFCGLGNFTLPLARQ-----------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD-Q---------- 361 (443)
T ss_pred EeccCCHHHHHHHHh-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-h----------
Confidence 589999999988764 257999999999999999999999998899998887653110 0
Q ss_pred CcccccccccccccEEEEcCCCCCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
......||.|++|||++|.
T Consensus 362 ------~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 362 ------PWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred ------hhhcCCCCEEEECcCCcCh
Confidence 0011459999999998763
No 51
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.70 E-value=0.00025 Score=70.94 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=69.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|++.|..|..++.+. +.|+++|.++..+..+++++++++..++.+...|+....
T Consensus 85 iG~GsG~~t~~la~~~-----------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------------- 139 (212)
T PRK00312 85 IGTGSGYQAAVLAHLV-----------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-------------- 139 (212)
T ss_pred ECCCccHHHHHHHHHh-----------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--------------
Confidence 4788999888776652 479999999999999999999999988888888764310
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
.....||+|+++.+|.. +..+.+++|+|||+||.+..
T Consensus 140 -------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 -------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEEEEEEc
Confidence 01146999999986421 12234678999999998754
No 52
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.70 E-value=0.00011 Score=73.98 Aligned_cols=92 Identities=29% Similarity=0.352 Sum_probs=67.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
|||+=|..|.++|..- ....|+|+|.++.-++.|++++++.+..+ +.+++.|+..++.
T Consensus 108 ~faGIG~f~l~~ak~~---------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~------------ 166 (200)
T PF02475_consen 108 MFAGIGPFSLPIAKHG---------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP------------ 166 (200)
T ss_dssp TT-TTTTTHHHHHHHT----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------------
T ss_pred ccCCccHHHHHHhhhc---------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC------------
Confidence 7999999999998742 13589999999999999999999999875 7799999988742
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
...||||+++-|=++ ...|..|+.+++.||.+-|
T Consensus 167 ----------~~~~drvim~lp~~~--------------------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 167 ----------EGKFDRVIMNLPESS--------------------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ----------TT-EEEEEE--TSSG--------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred ----------ccccCEEEECChHHH--------------------------HHHHHHHHHHhcCCcEEEC
Confidence 257999999988211 1237889999999999987
No 53
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.69 E-value=0.00011 Score=80.66 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=72.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++||.|..+..++.... ...|+|||+++.-++.+++|++.++..++.+.+.|+..+...
T Consensus 64 l~aGsG~~~l~~a~~~~---------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~------------ 122 (382)
T PRK04338 64 ALSASGIRGIRYALETG---------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE------------ 122 (382)
T ss_pred CCCcccHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh------------
Confidence 57899999988865421 247999999999999999999999998888899988654210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
...||.|++||| |++. ..|..|+..+++||.|.+|
T Consensus 123 ---------~~~fD~V~lDP~--Gs~~------------------------~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 123 ---------ERKFDVVDIDPF--GSPA------------------------PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---------cCCCCEEEECCC--CCcH------------------------HHHHHHHHHhcCCCEEEEE
Confidence 145999999999 4332 3478889999996655555
No 54
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.69 E-value=0.00031 Score=70.82 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=75.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+..+++... +.+.|+++|.++..+...++++++.+.+++.+...|+..++.
T Consensus 52 iGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------- 110 (231)
T TIGR02752 52 VCCGTADWSIALAEAVG--------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF------------- 110 (231)
T ss_pred eCCCcCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC-------------
Confidence 47899999998887653 357999999999999999999998888888888888766431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
....||.|++.-. ++..++ ..++|..+.++|+|||+++..+
T Consensus 111 --------~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 111 --------DDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred --------CCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 0146999987532 111111 1357889999999999998653
No 55
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.69 E-value=0.00037 Score=70.36 Aligned_cols=122 Identities=20% Similarity=0.083 Sum_probs=74.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||||+.|..+++.+. +.|.|+|+|+++- .+.+++.+.+.|+...+.+.- .
T Consensus 58 lG~GtG~~t~~l~~~~~--------~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~--i------- 109 (209)
T PRK11188 58 LGAAPGGWSQYAVTQIG--------DKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKA--L------- 109 (209)
T ss_pred EcccCCHHHHHHHHHcC--------CCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHH--H-------
Confidence 48999999999988753 3589999999871 234678888888765321000 0
Q ss_pred CcccccccccccccEEEEcC-C-CCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 81 GIESESNMGQLLFDRVLCDV-P-CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDv-P-CSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
. .......||.|++|. | ++|.. .. +......+...+|..+.++|||||++|-.+ ...+
T Consensus 110 --~--~~~~~~~~D~V~S~~~~~~~g~~------------~~-d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~ 169 (209)
T PRK11188 110 --L--ERVGDSKVQVVMSDMAPNMSGTP------------AV-DIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGE 169 (209)
T ss_pred --H--HHhCCCCCCEEecCCCCccCCCh------------HH-HHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCc
Confidence 0 001125699999986 3 22211 11 111112224578999999999999998864 3334
Q ss_pred cHHHHHHHHHhC
Q 006372 159 NEAVVAEILRKC 170 (648)
Q Consensus 159 NEaVV~~~L~~~ 170 (648)
...-+...|+++
T Consensus 170 ~~~~~l~~l~~~ 181 (209)
T PRK11188 170 GFDEYLREIRSL 181 (209)
T ss_pred CHHHHHHHHHhC
Confidence 444444555543
No 56
>PLN02476 O-methyltransferase
Probab=97.66 E-value=0.00016 Score=76.30 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=77.4
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
..+.|.-|..++..+. +.|.|+++|.++.++...++++++.|.. ++.+...||........
T Consensus 126 GT~tGySal~lA~al~--------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~---------- 187 (278)
T PLN02476 126 GVYTGYSSLAVALVLP--------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI---------- 187 (278)
T ss_pred cCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH----------
Confidence 4567888888887663 3688999999999999999999999986 79999998866421100
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
.......||.|++|++ + ......+..++++|++||.||.=-+-
T Consensus 188 -----~~~~~~~FD~VFIDa~---------------K----------~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 188 -----QNGEGSSYDFAFVDAD---------------K----------RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred -----hcccCCCCCEEEECCC---------------H----------HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 0011257999999997 1 22345678889999999999986543
No 57
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.66 E-value=0.00015 Score=73.56 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=67.9
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
++.|--|+.|+.++. +.|.|+++|.++.-+...++++++++..|+.+...|+..-
T Consensus 81 tGsGY~aAlla~lvg--------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g----------------- 135 (209)
T PF01135_consen 81 TGSGYQAALLAHLVG--------PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG----------------- 135 (209)
T ss_dssp -TTSHHHHHHHHHHS--------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT-----------------
T ss_pred CCCcHHHHHHHHhcC--------ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc-----------------
Confidence 567778888877764 3689999999999999999999999999999999987541
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
......||+|++.+.|. .-|..| ++.|++||+||--
T Consensus 136 ----~~~~apfD~I~v~~a~~------~ip~~l----------------------~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 ----WPEEAPFDRIIVTAAVP------EIPEAL----------------------LEQLKPGGRLVAP 171 (209)
T ss_dssp ----TGGG-SEEEEEESSBBS------S--HHH----------------------HHTEEEEEEEEEE
T ss_pred ----cccCCCcCEEEEeeccc------hHHHHH----------------------HHhcCCCcEEEEE
Confidence 11235699999988752 334433 5678999999853
No 58
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.63 E-value=0.00026 Score=77.81 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=86.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||.|..+.++|... |.+.++|+|++...+..+..++.+.|..|+.+++.||..+... +
T Consensus 129 IGcGsG~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~---------- 188 (390)
T PRK14121 129 IGFGSGRHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-L---------- 188 (390)
T ss_pred EcCcccHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-C----------
Confidence 4899999999998863 4678999999999999999999999999999999999765321 1
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||+|++=-| +-|.+-. . .++ .|..+|..+.++|++||.+...|.+.
T Consensus 189 --------~~~s~D~I~lnFP-----------dPW~Kkr--H-RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 189 --------PSNSVEKIFVHFP-----------VPWDKKP--H-RRV--ISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred --------CCCceeEEEEeCC-----------CCccccc--h-hhc--cHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 1256899998544 2343211 1 122 37889999999999999999999886
No 59
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.61 E-value=0.00016 Score=79.29 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=73.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++||.|.-+.-++.-.. +...|++||+++.-++.+++|++.++..++.+++.|+..+...
T Consensus 51 ~faGsG~rgir~a~e~~--------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~------------ 110 (374)
T TIGR00308 51 ALSASGIRAIRYAHEIE--------GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY------------ 110 (374)
T ss_pred CCCchhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH------------
Confidence 47888888887755321 1358999999999999999999999988899999998765210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
...+||.|.+||+ |+.+ ..|..|++.++.||. +|-|||
T Consensus 111 --------~~~~fDvIdlDPf--Gs~~------------------------~fld~al~~~~~~gl-L~vTaT 148 (374)
T TIGR00308 111 --------RNRKFHVIDIDPF--GTPA------------------------PFVDSAIQASAERGL-LLVTAT 148 (374)
T ss_pred --------hCCCCCEEEeCCC--CCcH------------------------HHHHHHHHhcccCCE-EEEEec
Confidence 0146999999998 3221 358899999998665 555664
No 60
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.60 E-value=0.00041 Score=69.51 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=69.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
++|++|..|..+++++. +.|.|+++|.++.-+...++++++++.. ++.+.+.|+...+.
T Consensus 79 iG~GsG~~~~~la~~~~--------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------------ 138 (205)
T PRK13944 79 VGTGSGYQAAVCAEAIE--------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------------ 138 (205)
T ss_pred ECcCccHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------------
Confidence 36889999999988764 2579999999999999999999999875 48888888754210
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
....||+|+++.... . +....++.|++||+||..
T Consensus 139 ---------~~~~fD~Ii~~~~~~---~-------------------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 ---------KHAPFDAIIVTAAAS---T-------------------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ---------cCCCccEEEEccCcc---h-------------------------hhHHHHHhcCcCcEEEEE
Confidence 014699999986521 0 012345789999999875
No 61
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.56 E-value=0.00032 Score=71.98 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=73.9
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+.+.|.=|..|+..+. +.|.|+++|.+++++...++++++.|.. ++.+...|+.........
T Consensus 76 Gt~~G~s~l~la~~~~--------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~--------- 138 (234)
T PLN02781 76 GVFTGYSLLTTALALP--------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN--------- 138 (234)
T ss_pred cCcccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh---------
Confidence 4566777777776653 3689999999999999999999999985 688888888653110000
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
......||.|++|+. + .....++..++++|+|||.||...+
T Consensus 139 ------~~~~~~fD~VfiDa~---------------k----------~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 139 ------NDPKPEFDFAFVDAD---------------K----------PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred ------CCCCCCCCEEEECCC---------------H----------HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 001247999999985 0 1112457888999999999996554
No 62
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.00034 Score=75.47 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=73.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeec-ccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~-Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
...+|++|+|.+.+.-.+.|++.++.....+... ||...| +. ...||.|.+|||=
T Consensus 219 G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~--------------------~~~vdaIatDPPY--- 274 (347)
T COG1041 219 GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LR--------------------DNSVDAIATDPPY--- 274 (347)
T ss_pred CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CC--------------------CCccceEEecCCC---
Confidence 4689999999999999999999999887766666 888876 11 1359999999992
Q ss_pred CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 106 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 106 Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
| +-+......|..|-.++|..+...||+||++|+.+=
T Consensus 275 G----------rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 G----------RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred C----------cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 2 212233445889999999999999999999999865
No 63
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.50 E-value=0.00016 Score=71.65 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=50.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||+.|+-.... |.. +...|+++|.|++.+..|++|++.++..+ +.+.+.|+..+..-.
T Consensus 49 LFaGSGalGlEA---LSR-------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~---------- 108 (183)
T PF03602_consen 49 LFAGSGALGLEA---LSR-------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKL---------- 108 (183)
T ss_dssp TT-TTSHHHHHH---HHT-------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHH----------
T ss_pred cCCccCccHHHH---Hhc-------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhh----------
Confidence 589999888654 432 34689999999999999999999999876 888888875532100
Q ss_pred cCcccccccccccccEEEEcCC
Q 006372 80 KGIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvP 101 (648)
.....+||.|++|||
T Consensus 109 -------~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 109 -------AKKGEKFDIIFLDPP 123 (183)
T ss_dssp -------HHCTS-EEEEEE--S
T ss_pred -------cccCCCceEEEECCC
Confidence 012367999999999
No 64
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00053 Score=71.05 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=72.6
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCcC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.++|.-|+.||..+. +.|.|+..|....+++.-++|++.+|..+ +.+...|....-
T Consensus 103 tGSG~lt~~La~~vg--------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--------------- 159 (256)
T COG2519 103 TGSGALTAYLARAVG--------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--------------- 159 (256)
T ss_pred cCchHHHHHHHHhhC--------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc---------------
Confidence 466777888877653 57999999999999999999999999876 666666544321
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcE-EEEeccc
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR-IVYSTCS 153 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~-LVYSTCS 153 (648)
....||+|++|.| +| | +.|.++..+|||||. ++|+.|.
T Consensus 160 -------~~~~vDav~LDmp---------~P--W----------------~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 160 -------DEEDVDAVFLDLP---------DP--W----------------NVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred -------cccccCEEEEcCC---------Ch--H----------------HHHHHHHHHhCCCcEEEEEcCCH
Confidence 1137999999998 33 2 348999999999985 5688876
No 65
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.47 E-value=0.00029 Score=72.44 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=74.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|--|..|+..+. +.|.|+++|.++.=++..++.+++.+..++..+..||..+|.-
T Consensus 54 v~~GtG~~~~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~------------ 113 (233)
T PF01209_consen 54 VACGTGDVTRELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP------------ 113 (233)
T ss_dssp ET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-------------
T ss_pred eCCChHHHHHHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC------------
Confidence 58999988887766543 4689999999999999999999998888999999999887631
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||.|.+ +-| +|.-|+ +.+.|....+.|||||+++.-- ++.-+|.
T Consensus 114 ---------d~sfD~v~~-----~fg-lrn~~d----------------~~~~l~E~~RVLkPGG~l~ile--~~~p~~~ 160 (233)
T PF01209_consen 114 ---------DNSFDAVTC-----SFG-LRNFPD----------------RERALREMYRVLKPGGRLVILE--FSKPRNP 160 (233)
T ss_dssp ---------TT-EEEEEE-----ES--GGG-SS----------------HHHHHHHHHHHEEEEEEEEEEE--EEB-SSH
T ss_pred ---------CCceeEEEH-----Hhh-HHhhCC----------------HHHHHHHHHHHcCCCeEEEEee--ccCCCCc
Confidence 156999987 122 221122 2346899999999999998544 4444554
Q ss_pred HHHHHHHHh
Q 006372 161 AVVAEILRK 169 (648)
Q Consensus 161 aVV~~~L~~ 169 (648)
++..+..-
T Consensus 161 -~~~~~~~~ 168 (233)
T PF01209_consen 161 -LLRALYKF 168 (233)
T ss_dssp -HHHHHHHH
T ss_pred -hhhceeee
Confidence 55555544
No 66
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.46 E-value=0.0006 Score=68.61 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=55.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|+-+..++.. ..+.|+++|.++.-++.+++|+++++..++.+.+.|+..+.. .
T Consensus 60 l~~GsG~l~l~~lsr----------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----~-------- 117 (199)
T PRK10909 60 CFAGSGALGLEALSR----------YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----Q-------- 117 (199)
T ss_pred cCCCccHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh----h--------
Confidence 588999888754332 135899999999999999999999998889998888754311 0
Q ss_pred CcccccccccccccEEEEcCC
Q 006372 81 GIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvP 101 (648)
....||.|++|||
T Consensus 118 --------~~~~fDlV~~DPP 130 (199)
T PRK10909 118 --------PGTPHNVVFVDPP 130 (199)
T ss_pred --------cCCCceEEEECCC
Confidence 0135999999999
No 67
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00069 Score=73.34 Aligned_cols=136 Identities=20% Similarity=0.183 Sum_probs=93.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
|+|+=|-.|..+|..- .-.|+|+|+++.-++.|++|++..+..+ +..+++|+..++..
T Consensus 195 mFAGVGpfsi~~Ak~g----------~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~----------- 253 (341)
T COG2520 195 MFAGVGPFSIPIAKKG----------RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE----------- 253 (341)
T ss_pred ccCCcccchhhhhhcC----------CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----------
Confidence 7899999999887641 2239999999999999999999999877 78899999886431
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec-ccCCccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST-CSMNPVE 158 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST-CSl~p~E 158 (648)
...||||+.--|= .+.+.|..|+++++.||.|.|-+ |--+..+
T Consensus 254 ----------~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~ 297 (341)
T COG2520 254 ----------LGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIE 297 (341)
T ss_pred ----------cccCCEEEeCCCC--------------------------cchhhHHHHHHHhhcCcEEEEEeccchhhcc
Confidence 1569999997661 22445888999999999887654 4333322
Q ss_pred --cHHHHHHHHHhCCCceEEEeCCCcCCccccCCCccccc
Q 006372 159 --NEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWK 196 (648)
Q Consensus 159 --NEaVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~W~ 196 (648)
.+..+..+-.+.+-.++.+....- - ...||+..|.
T Consensus 298 ~~~~~~i~~~~~~~~~~~~v~~~r~V-k--sysP~v~hv~ 334 (341)
T COG2520 298 ERPEKRIKSAARKGGYKVEVLKVRRV-K--SYSPGVYHVV 334 (341)
T ss_pred cchHHHHHHHHhhccCcceEEEEEEe-c--ccCCCeeEEE
Confidence 345555555555434555544321 1 1456655543
No 68
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.44 E-value=0.00012 Score=71.47 Aligned_cols=132 Identities=25% Similarity=0.253 Sum_probs=69.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||||||.|..+++..+ +.+.|+|+|+.+. ...+++.....|........ .
T Consensus 30 lG~aPGGws~~~~~~~~--------~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~--~-------- 80 (181)
T PF01728_consen 30 LGAAPGGWSQVLLQRGG--------PAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIK--D-------- 80 (181)
T ss_dssp ET-TTSHHHHHHHTSTT--------TEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSH--H--------
T ss_pred cCCcccceeeeeeeccc--------ccceEEEEecccc-----------ccccceeeeecccchhhHHH--h--------
Confidence 59999999999977642 3689999999765 11244444444432211000 0
Q ss_pred CcccccccccccccEEEEcC--CCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 81 GIESESNMGQLLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDv--PCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
...........||.|++|. +|+|... .+ -.....+....|.-|+++|++||.+|--+-.-...
T Consensus 81 -i~~~~~~~~~~~dlv~~D~~~~~~g~~~------------~d-~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~- 145 (181)
T PF01728_consen 81 -IRKLLPESGEKFDLVLSDMAPNVSGDRN------------ID-EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI- 145 (181)
T ss_dssp -GGGSHGTTTCSESEEEE-------SSHH------------SS-HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-
T ss_pred -hhhhccccccCcceeccccccCCCCchh------------hH-HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-
Confidence 0000000125799999999 5655422 11 12233566666667888999999887665543222
Q ss_pred cHHHHHHHHHhCCCceEEEe
Q 006372 159 NEAVVAEILRKCEGSVELVD 178 (648)
Q Consensus 159 NEaVV~~~L~~~~g~veLvd 178 (648)
+.++..+-..+ ..+.++.
T Consensus 146 -~~~~~~l~~~F-~~v~~~K 163 (181)
T PF01728_consen 146 -EELIYLLKRCF-SKVKIVK 163 (181)
T ss_dssp -HHHHHHHHHHH-HHEEEEE
T ss_pred -HHHHHHHHhCC-eEEEEEE
Confidence 35555444432 2455544
No 69
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.43 E-value=0.0011 Score=68.92 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=72.4
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
++++|.-+.+++..+. +.+.|+++|.++..+...+++...++..++.+...|...+|.
T Consensus 85 G~G~G~~~~~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~-------------- 142 (272)
T PRK11873 85 GSGGGFDCFLAARRVG--------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV-------------- 142 (272)
T ss_pred CCCCCHHHHHHHHHhC--------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------------
Confidence 5677776776666543 357899999999999999999999988888777777654331
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
....||.|+...- +...|+ ..++|..++++|||||+|+.+.-.
T Consensus 143 -------~~~~fD~Vi~~~v------~~~~~d----------------~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 143 -------ADNSVDVIISNCV------INLSPD----------------KERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred -------CCCceeEEEEcCc------ccCCCC----------------HHHHHHHHHHHcCCCcEEEEEEee
Confidence 0146999997631 111111 135789999999999999987543
No 70
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00054 Score=69.32 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=67.5
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
+++|--|+-|+++ .|.|+++|++..=++.-+.+++++|..|+.|.+.|+..-
T Consensus 81 tGsGY~aAvla~l-----------~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G----------------- 132 (209)
T COG2518 81 TGSGYQAAVLARL-----------VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG----------------- 132 (209)
T ss_pred CCchHHHHHHHHH-----------hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-----------------
Confidence 5677778877776 369999999999899999999999999999999998651
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
+.....||+|++-+-+ ..-|+.| ++.||+||+||--
T Consensus 133 ----~~~~aPyD~I~Vtaaa------~~vP~~L----------------------l~QL~~gGrlv~P 168 (209)
T COG2518 133 ----WPEEAPYDRIIVTAAA------PEVPEAL----------------------LDQLKPGGRLVIP 168 (209)
T ss_pred ----CCCCCCcCEEEEeecc------CCCCHHH----------------------HHhcccCCEEEEE
Confidence 1223679999997652 2223322 5678999999965
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.39 E-value=0.0024 Score=69.38 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=76.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|+.|.-+..++... +...|+++|+++.-+...+.++++.+... .+...|....
T Consensus 203 lGCG~G~ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~~--------------- 257 (342)
T PRK09489 203 VGCGAGVLSAVLARHS---------PKIRLTLSDVSAAALESSRATLAANGLEG-EVFASNVFSD--------------- 257 (342)
T ss_pred eccCcCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEEcccccc---------------
Confidence 4678888888777652 35689999999999999999999887643 3444443210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
....||.|++++|= ..|. .++ ...=.+++..|.+.|||||.|+..+.++.|-+
T Consensus 258 --------~~~~fDlIvsNPPF-H~g~---------~~~-------~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 258 --------IKGRFDMIISNPPF-HDGI---------QTS-------LDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred --------cCCCccEEEECCCc-cCCc---------ccc-------HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 01569999999981 0110 000 11225679999999999999999999988866
No 72
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.38 E-value=0.00085 Score=69.35 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=82.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.||++|--|.++++.. ++|.|++.|.+..-+..-+..++..+..++..+..||..+|. .
T Consensus 58 va~GTGd~a~~~~k~~---------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf-~----------- 116 (238)
T COG2226 58 VACGTGDMALLLAKSV---------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF-P----------- 116 (238)
T ss_pred ecCCccHHHHHHHHhc---------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC-C-----------
Confidence 4999999999998874 369999999999999999999888887778889999999872 1
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...||.|.+.= | +|.-+++ -+.|+.+.+.|||||+++ .+.+++-.+.
T Consensus 117 ---------D~sFD~vt~~f-----g-lrnv~d~----------------~~aL~E~~RVlKpgG~~~--vle~~~p~~~ 163 (238)
T COG2226 117 ---------DNSFDAVTISF-----G-LRNVTDI----------------DKALKEMYRVLKPGGRLL--VLEFSKPDNP 163 (238)
T ss_pred ---------CCccCEEEeee-----h-hhcCCCH----------------HHHHHHHHHhhcCCeEEE--EEEcCCCCch
Confidence 25799998832 1 2222222 345889999999999554 5666666664
Q ss_pred HH
Q 006372 161 AV 162 (648)
Q Consensus 161 aV 162 (648)
-+
T Consensus 164 ~~ 165 (238)
T COG2226 164 VL 165 (238)
T ss_pred hh
Confidence 33
No 73
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.34 E-value=0.00097 Score=71.84 Aligned_cols=94 Identities=15% Similarity=0.281 Sum_probs=69.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|.-|.+++.... ..|.|+++|.++..+...+++++++|..++.+...|+...+.
T Consensus 87 IG~GtG~~a~~LA~~~~--------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~------------- 145 (322)
T PRK13943 87 IGGGTGYNAAVMSRVVG--------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP------------- 145 (322)
T ss_pred EeCCccHHHHHHHHhcC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-------------
Confidence 47889999999988653 147899999999999999999999999888888887654321
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
....||.|++++.+. . +....++.|++||++|...
T Consensus 146 --------~~~~fD~Ii~~~g~~------~----------------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 --------EFAPYDVIFVTVGVD------E----------------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------ccCCccEEEECCchH------H----------------------hHHHHHHhcCCCCEEEEEe
Confidence 013599999975311 0 1123456799999988643
No 74
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.29 E-value=0.004 Score=69.23 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=86.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|+++|.-+..++... +...|+|+|+|+.-++..++|+++++. ++.+.+.|..... .
T Consensus 258 LGcGSG~IaiaLA~~~---------p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l---------- 314 (423)
T PRK14966 258 LGTGSGAVAVTVALER---------PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---M---------- 314 (423)
T ss_pred EeChhhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---c----------
Confidence 4788888887776542 356899999999999999999998886 6777777753311 0
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcch----hhhhHHHHHHHHHHHhhccccCcEEEEecccCCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 156 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~----~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p 156 (648)
....+||.|+++||=...+.....+.. .++.|.. ...--..-++|+..+.+.|+|||.+++-. ..
T Consensus 315 -------~~~~~FDLIVSNPPYI~~~e~~l~~~~-v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G~ 383 (423)
T PRK14966 315 -------PSEGKWDIIVSNPPYIENGDKHLLQGD-LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---GF 383 (423)
T ss_pred -------ccCCCccEEEECCCCCCcchhhhcchh-hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---Cc
Confidence 001469999999996544432111111 1222211 11112345699999999999999987532 33
Q ss_pred cccHHHHHHHHHhCC
Q 006372 157 VENEAVVAEILRKCE 171 (648)
Q Consensus 157 ~ENEaVV~~~L~~~~ 171 (648)
...+-|..++++.+
T Consensus 384 -~Q~e~V~~ll~~~G 397 (423)
T PRK14966 384 -DQGAAVRGVLAENG 397 (423)
T ss_pred -cHHHHHHHHHHHCC
Confidence 33445566666654
No 75
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.001 Score=66.38 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=55.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||++|+=....+.. +...++.+|.|.+-+..|++|++.++. .++.+...|+..+....
T Consensus 50 lFAGSGaLGlEAlSR----------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~---------- 109 (187)
T COG0742 50 LFAGSGALGLEALSR----------GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL---------- 109 (187)
T ss_pred ecCCccHhHHHHHhC----------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc----------
Confidence 578888877654432 356899999999999999999999995 57888888887542211
Q ss_pred cCcccccccccccccEEEEcCC
Q 006372 80 KGIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvP 101 (648)
.....||.|++|||
T Consensus 110 --------~~~~~FDlVflDPP 123 (187)
T COG0742 110 --------GTREPFDLVFLDPP 123 (187)
T ss_pred --------CCCCcccEEEeCCC
Confidence 01135999999999
No 76
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.28 E-value=0.0011 Score=64.92 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=53.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||+-||=|.|+|... -.|+|+|+|+.|+++++||++-+|+ .++..++.|...+....
T Consensus 6 ~fcG~GGNtIqFA~~~-----------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------- 64 (163)
T PF09445_consen 6 AFCGVGGNTIQFARTF-----------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------- 64 (163)
T ss_dssp TT-TTSHHHHHHHHTT------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------
T ss_pred eccCcCHHHHHHHHhC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc----------
Confidence 6999999999998852 3799999999999999999999996 58999999987642100
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLR 109 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlr 109 (648)
.. ...||.|+++||=.|-.-.+
T Consensus 65 -------~~-~~~~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 65 -------KS-NKIFDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp --------------SEEEE---BSSGGGGG
T ss_pred -------cc-cccccEEEECCCCCCccccc
Confidence 00 01289999999966655443
No 77
>PRK08317 hypothetical protein; Provisional
Probab=97.27 E-value=0.0026 Score=63.28 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=76.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|.-+..++..+. +.+.|+++|.++.++...+.+.. ....++.+...|+..++.
T Consensus 26 iG~G~G~~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~------------- 83 (241)
T PRK08317 26 VGCGPGNDARELARRVG--------PEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPF------------- 83 (241)
T ss_pred eCCCCCHHHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCC-------------
Confidence 47899999998888652 35789999999999888877622 223567777777655431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCC----c
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN----P 156 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~----p 156 (648)
....||.|++... +..+ .-+..++.++.++|||||.|+.+.+... .
T Consensus 84 --------~~~~~D~v~~~~~-------------~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~ 133 (241)
T PRK08317 84 --------PDGSFDAVRSDRV-------------LQHL---------EDPARALAEIARVLRPGGRVVVLDTDWDTLVWH 133 (241)
T ss_pred --------CCCCceEEEEech-------------hhcc---------CCHHHHHHHHHHHhcCCcEEEEEecCCCceeec
Confidence 1146999998531 1111 0124578899999999999998876421 1
Q ss_pred cccHHHHHHHHH
Q 006372 157 VENEAVVAEILR 168 (648)
Q Consensus 157 ~ENEaVV~~~L~ 168 (648)
..+...+..++.
T Consensus 134 ~~~~~~~~~~~~ 145 (241)
T PRK08317 134 SGDRALMRKILN 145 (241)
T ss_pred CCChHHHHHHHH
Confidence 234445555544
No 78
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.22 E-value=0.0011 Score=72.78 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=56.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|+.|.-+..++.. ...|+|+|+++.-++..++|++.++..++.+.+.|+..+...
T Consensus 240 L~cG~G~~~l~la~~-----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~------------ 296 (374)
T TIGR02085 240 LFCGVGGFGLHCAGP-----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA------------ 296 (374)
T ss_pred ccCCccHHHHHHhhc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh------------
Confidence 578999998887632 257999999999999999999999998899998887654210
Q ss_pred CcccccccccccccEEEEcCC
Q 006372 81 GIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvP 101 (648)
....||.|++|||
T Consensus 297 --------~~~~~D~vi~DPP 309 (374)
T TIGR02085 297 --------QMSAPELVLVNPP 309 (374)
T ss_pred --------cCCCCCEEEECCC
Confidence 0134999999999
No 79
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.21 E-value=0.0053 Score=70.06 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=87.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+|+++|.-+..++..+ +...|+|+|+|+.-+...+.|+++++.. ++.+.+.|.... +
T Consensus 145 lG~GsG~iai~la~~~---------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~----------- 202 (506)
T PRK01544 145 LGTGSGCIAISLLCEL---------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--I----------- 202 (506)
T ss_pred ccCchhHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--C-----------
Confidence 5889998888776653 3568999999999999999999998864 577777664321 0
Q ss_pred cCcccccccccccccEEEEcCCCCCCCcccc-CcccccccCcch----hhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk-~p~i~~kws~~~----~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
...+||.|+++||=-....... .++. .++.|.. ...=-..-++|+..+.++|++||.++.. +..
T Consensus 203 ---------~~~~fDlIvsNPPYi~~~~~~~l~~~v-~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~ 271 (506)
T PRK01544 203 ---------EKQKFDFIVSNPPYISHSEKSEMAIET-INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF 271 (506)
T ss_pred ---------cCCCccEEEECCCCCCchhhhhcCchh-hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC
Confidence 0146999999999554332110 1111 1222211 1111235678999999999999999875 443
Q ss_pred CccccHHHHHHHHHhCC
Q 006372 155 NPVENEAVVAEILRKCE 171 (648)
Q Consensus 155 ~p~ENEaVV~~~L~~~~ 171 (648)
+ . .+-|..++.+.+
T Consensus 272 ~--q-~~~v~~~~~~~g 285 (506)
T PRK01544 272 K--Q-EEAVTQIFLDHG 285 (506)
T ss_pred c--h-HHHHHHHHHhcC
Confidence 2 3 344555555543
No 80
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.19 E-value=0.0033 Score=64.92 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=71.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
++|++|.-+..+++. ...|+++|+++.-+...+.++++.|. .++.+.+.|+..++..
T Consensus 51 iGcG~G~~a~~la~~-----------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~----------- 108 (255)
T PRK11036 51 AGGGEGQTAIKLAEL-----------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH----------- 108 (255)
T ss_pred eCCCchHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----------
Confidence 368899888888663 24799999999999999999988886 5788888777654211
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
....||.|++... + .|-. . ...+|..+.++|||||+|+-...+
T Consensus 109 ---------~~~~fD~V~~~~v------l--------~~~~-------~-~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 109 ---------LETPVDLILFHAV------L--------EWVA-------D-PKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred ---------cCCCCCEEEehhH------H--------HhhC-------C-HHHHHHHHHHHcCCCeEEEEEEEC
Confidence 0156999997433 1 1100 0 135788999999999999765443
No 81
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.19 E-value=0.00042 Score=70.03 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
+-|--|..||+.+. +.|.|+++|.++.+.+..+.++++.|.. .+.+.+.||..+..-..
T Consensus 55 ~~GySal~la~~l~--------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~------------ 114 (205)
T PF01596_consen 55 FTGYSALWLAEALP--------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA------------ 114 (205)
T ss_dssp TTSHHHHHHHHTST--------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH------------
T ss_pred ccccHHHHHHHhhc--------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH------------
Confidence 34555666666543 2689999999999999999999999984 69999998875421100
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
.......||.|++|+. + ..+...+..++++|++||.||.--+-.
T Consensus 115 ---~~~~~~~fD~VFiDa~---------------K----------~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 115 ---NDGEEGQFDFVFIDAD---------------K----------RNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp ---HTTTTTSEEEEEEEST---------------G----------GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred ---hccCCCceeEEEEccc---------------c----------cchhhHHHHHhhhccCCeEEEEccccc
Confidence 0011257999999995 1 112345677889999999999876543
No 82
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.17 E-value=0.0013 Score=67.19 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEee-cccccCCCcccCCCCCCCCCcCcc
Q 006372 6 GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTN-HEAQHFPGCRANKNFSSASDKGIE 83 (648)
Q Consensus 6 GgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn-~Da~~~p~~~~~~~~~~~~~~~~~ 83 (648)
|--|..||..+. ..|.|+++|.++.|....++++++.|... +.+.. .|+.....
T Consensus 71 GySal~mA~~l~--------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~---------------- 126 (219)
T COG4122 71 GYSALWMALALP--------DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS---------------- 126 (219)
T ss_pred CHHHHHHHhhCC--------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH----------------
Confidence 444555655543 16899999999999999999999999976 66665 36544211
Q ss_pred cccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 84 SESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 84 ~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
......||.||+|+- ...+...+.+++++|+|||.||-=--.+.
T Consensus 127 ---~~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 127 ---RLLDGSFDLVFIDAD-------------------------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred ---hccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 012367999999984 12335668999999999999987655544
No 83
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.001 Score=74.27 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=62.3
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.|+-|+.|..||.. -..|+++|+++.-....++|++++|..|+.+...++..+..-.
T Consensus 301 YCGvG~f~l~lA~~-----------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~------------ 357 (432)
T COG2265 301 YCGVGTFGLPLAKR-----------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW------------ 357 (432)
T ss_pred ccCCChhhhhhccc-----------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc------------
Confidence 57889999988743 4689999999999999999999999999999988888764311
Q ss_pred cccccccccccccEEEEcCCCCCCC
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
.....||.||+|||=+|.+
T Consensus 358 ------~~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 358 ------WEGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred ------cccCCCCEEEECCCCCCCC
Confidence 1225799999999977776
No 84
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0096 Score=59.52 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=85.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|.-+.-.+-+ +.-.|+|+|+|+.-++.++.|.+++ ..++.++..|.+.|.
T Consensus 52 lG~GTG~La~ga~~l----------Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~-------------- 106 (198)
T COG2263 52 LGAGTGILAIGAALL----------GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR-------------- 106 (198)
T ss_pred cCCCcCHHHHHHHhc----------CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC--------------
Confidence 356666655544222 2468999999999999999999994 456888888877752
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
..||.|+.+|| -|+.+|++| +..|..|++.. .+|||- +..-++
T Consensus 107 ----------~~~dtvimNPP---FG~~~rhaD-----------------r~Fl~~Ale~s----~vVYsi---H~a~~~ 149 (198)
T COG2263 107 ----------GKFDTVIMNPP---FGSQRRHAD-----------------RPFLLKALEIS----DVVYSI---HKAGSR 149 (198)
T ss_pred ----------CccceEEECCC---CccccccCC-----------------HHHHHHHHHhh----heEEEe---eccccH
Confidence 56899999999 466677766 34578888884 669984 555688
Q ss_pred HHHHHHHHhCCCceEEE
Q 006372 161 AVVAEILRKCEGSVELV 177 (648)
Q Consensus 161 aVV~~~L~~~~g~veLv 177 (648)
+-|..+....|+.+-..
T Consensus 150 ~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 150 DFVEKFAADLGGTVTHI 166 (198)
T ss_pred HHHHHHHHhcCCeEEEE
Confidence 89999988888765443
No 85
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.07 E-value=0.0012 Score=72.02 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=46.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 65 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~ 65 (648)
+||+.|+.|..++.. ...|+|+|.+..-++.+++|++.++..|+.+.+.|+..+
T Consensus 213 l~~G~G~~sl~la~~-----------~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 213 LYCGNGNFTLALARN-----------FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred EeccccHHHHHHHhh-----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 489999999977653 248999999999999999999999999999999998764
No 86
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.04 E-value=0.0082 Score=62.03 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=62.8
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCC
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
+.|+|+|+|+..+...++++++.+.. .+.+... ...||.|++...
T Consensus 143 ~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----------------------------~~~fD~Vvani~----- 188 (250)
T PRK00517 143 KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----------------------------DLKADVIVANIL----- 188 (250)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----------------------------CCCcCEEEEcCc-----
Confidence 46999999999999999999887762 2221100 025999997531
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCceEEEe
Q 006372 107 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 178 (648)
Q Consensus 107 tlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~veLvd 178 (648)
......++..+.++|||||++|.|.... +..+-+...+++++ ++++.
T Consensus 189 --------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~~~l~~~G--f~~~~ 235 (250)
T PRK00517 189 --------------------ANPLLELAPDLARLLKPGGRLILSGILE---EQADEVLEAYEEAG--FTLDE 235 (250)
T ss_pred --------------------HHHHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHHHHHHHCC--CEEEE
Confidence 1223567889999999999999986543 34445566667665 44443
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.01 E-value=0.0073 Score=63.83 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=72.9
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|++|.-+..++.+ +.+.|+|+|.|+..+...++++.+.+... +.+...+...+
T Consensus 167 GcGsG~lai~aa~~----------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--------------- 221 (288)
T TIGR00406 167 GCGSGILSIAALKL----------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--------------- 221 (288)
T ss_pred CCChhHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------------
Confidence 56777666554332 23589999999999999999999887653 33333221110
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
...+||.|+++..+ ..-..++.++.++|||||+|+.|...- +..
T Consensus 222 --------~~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~LkpgG~li~sgi~~---~~~ 265 (288)
T TIGR00406 222 --------IEGKADVIVANILA-------------------------EVIKELYPQFSRLVKPGGWLILSGILE---TQA 265 (288)
T ss_pred --------cCCCceEEEEecCH-------------------------HHHHHHHHHHHHHcCCCcEEEEEeCcH---hHH
Confidence 02479999986420 111467889999999999999987542 334
Q ss_pred HHHHHHHHhCCCceEEEe
Q 006372 161 AVVAEILRKCEGSVELVD 178 (648)
Q Consensus 161 aVV~~~L~~~~g~veLvd 178 (648)
.-|..++++. ++++.
T Consensus 266 ~~v~~~~~~~---f~~~~ 280 (288)
T TIGR00406 266 QSVCDAYEQG---FTVVE 280 (288)
T ss_pred HHHHHHHHcc---Cceee
Confidence 4455555542 55544
No 88
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.00 E-value=0.0018 Score=54.72 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=62.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
++.|-.+.++++. +...|+++|.++..++..+++.+. .++.+...|+..+|.
T Consensus 5 ~G~G~~~~~l~~~----------~~~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l~~--------------- 56 (95)
T PF08241_consen 5 CGTGRFAAALAKR----------GGASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDLPF--------------- 56 (95)
T ss_dssp -TTSHHHHHHHHT----------TTCEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTSSSS---------------
T ss_pred CcCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHhcccc---cCchheeehHHhCcc---------------
Confidence 5678888877765 147899999999988877765543 334477778777642
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
....||.|++-- .|..+ .-+.+++..+.+.|||||++|.
T Consensus 57 ------~~~sfD~v~~~~-------------~~~~~---------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ------PDNSFDVVFSNS-------------VLHHL---------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -------TT-EEEEEEES-------------HGGGS---------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------cccccccccccc-------------ceeec---------cCHHHHHHHHHHHcCcCeEEeC
Confidence 125799998832 12211 4567889999999999999973
No 89
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.98 E-value=0.0058 Score=63.69 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=71.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHH---hCCCcEEEeecccccCCCcccCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR---MCTANLIVTNHEAQHFPGCRANKNFSSA 77 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkR---lg~~nv~vtn~Da~~~p~~~~~~~~~~~ 77 (648)
++|++|.-+..+++... +.+.|+|+|.++.-+...+++... .+..++.+.+.|+..+|.
T Consensus 80 lGcGtG~~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~---------- 141 (261)
T PLN02233 80 LCCGSGDLAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF---------- 141 (261)
T ss_pred ECCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC----------
Confidence 47899998877776542 357999999999887777655431 234678888888876542
Q ss_pred CCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 78 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 78 ~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|++- . +++.-++ ..++|..+.+.|||||+++-++.+-
T Consensus 142 -----------~~~sfD~V~~~-----~-~l~~~~d----------------~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 142 -----------DDCYFDAITMG-----Y-GLRNVVD----------------RLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred -----------CCCCEeEEEEe-----c-ccccCCC----------------HHHHHHHHHHHcCcCcEEEEEECCC
Confidence 11469999862 1 1111111 2456899999999999999887663
No 90
>PLN02244 tocopherol O-methyltransferase
Probab=96.96 E-value=0.0056 Score=66.27 Aligned_cols=100 Identities=16% Similarity=0.080 Sum_probs=72.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
++|+.|+-+.+|++.. .+.|+++|+++.-+...+++.++.+. .++.+...|+..+|.
T Consensus 125 iGCG~G~~~~~La~~~----------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------------ 182 (340)
T PLN02244 125 VGCGIGGSSRYLARKY----------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------------ 182 (340)
T ss_pred ecCCCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------------
Confidence 4688999988887753 25899999999998888888887776 468888888766542
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
....||.|++- +++..-++ ..++|..+.++|||||+++.+++.
T Consensus 183 ---------~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 183 ---------EDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ---------CCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11569999872 11111111 135788899999999999988754
No 91
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.93 E-value=0.0021 Score=70.01 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=46.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 65 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~ 65 (648)
+||+.|..+..++.. ...|+|+|.+..-+..+++|++..+..|+.+.+.|+..+
T Consensus 204 l~~G~G~~sl~la~~-----------~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 204 LYCGNGNFSLALAQN-----------FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred EeccccHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 489999999977654 248999999999999999999999998999999888664
No 92
>PLN03075 nicotianamine synthase; Provisional
Probab=96.90 E-value=0.0058 Score=65.13 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=72.8
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHH-hCCC-cEEEeecccccCCCcccCCCCCCCCCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTA-NLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkR-lg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++||+-|+.++..-+ .|.|.++..|.|+.....-+..+++ .+.. ++.+..+|+...+.
T Consensus 132 cGpgpltaiilaa~~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------------- 191 (296)
T PLN03075 132 SGPLPLTSIVLAKHH-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------------- 191 (296)
T ss_pred CCCcHHHHHHHHHhc-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-------------
Confidence 578887776654322 3578999999999999999998865 6764 58888888765321
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
....||.|+|+|= + .|.. .-+.++|.+..+.|+|||.|++-+
T Consensus 192 --------~l~~FDlVF~~AL------------i--~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 --------SLKEYDVVFLAAL------------V--GMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --------ccCCcCEEEEecc------------c--cccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 0146999999842 1 1211 234678999999999999999876
No 93
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.84 E-value=0.0038 Score=62.17 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=55.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||+.|+-+..++.. +...|+++|.+..-+..+++|++.++.. ++.+.+.|+..+.....
T Consensus 56 LfaGsG~lglea~sr----------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--------- 116 (189)
T TIGR00095 56 VFAGSGLLGEEALSR----------GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--------- 116 (189)
T ss_pred ecCCCcHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh---------
Confidence 589999888877553 2347999999999999999999999985 68888888855321000
Q ss_pred cCcccccccccccccEEEEcCC
Q 006372 80 KGIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvP 101 (648)
.....||.|++|||
T Consensus 117 --------~~~~~~dvv~~DPP 130 (189)
T TIGR00095 117 --------KKPTFDNVIYLDPP 130 (189)
T ss_pred --------ccCCCceEEEECcC
Confidence 00124899999999
No 94
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.83 E-value=0.0021 Score=69.97 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=53.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|||-|..|..||.. -..|+|+|.+..-+...++|++..+..|+...+.++..+........ ...
T Consensus 203 lycG~G~fsl~la~~-----------~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r-~~~--- 267 (352)
T PF05958_consen 203 LYCGVGTFSLPLAKK-----------AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR-EFN--- 267 (352)
T ss_dssp ES-TTTCCHHHHHCC-----------SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS--GGT---
T ss_pred EeecCCHHHHHHHhh-----------CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH-HHH---
Confidence 478999999988664 35899999999999999999999999999998887765532110000 000
Q ss_pred CcccccccccccccEEEEcCCCCCCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
...........+|.||+|||=+|.+
T Consensus 268 -~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 268 -RLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp -TGGGS-GGCTTESEEEE---TT-SC
T ss_pred -hhhhhhhhhcCCCEEEEcCCCCCch
Confidence 0000011124689999999987766
No 95
>PHA03412 putative methyltransferase; Provisional
Probab=96.81 E-value=0.0054 Score=63.43 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=70.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|.-+..++..+... +...|+|+|+|+.-+...+.++ +++.+.+.|...++.
T Consensus 56 lG~GSG~Lalala~~~~~~------~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~------------- 111 (241)
T PHA03412 56 LCAGIGGLSFAMVHMMMYA------KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF------------- 111 (241)
T ss_pred ccChHHHHHHHHHHhcccC------CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-------------
Confidence 6999999999988765321 2468999999999888777654 346677777654320
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
..+||.|+..||=.-.. ...+. ....=..+-.+++.+|++++++|+.|+.
T Consensus 112 ---------~~~FDlIIsNPPY~~~~--------~~d~~--ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 112 ---------DTLFDMAISNPPFGKIK--------TSDFK--GKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred ---------cCCccEEEECCCCCCcc--------ccccC--CcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 14799999999943322 11110 0011124556789999999999877553
No 96
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.79 E-value=0.0058 Score=62.52 Aligned_cols=116 Identities=29% Similarity=0.419 Sum_probs=80.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
-||+|.--+|++++.. ++|.|+|++.++.-.+-|.+..++ .+|++.+-.||+. |..+.
T Consensus 81 GAasGTTVSHvSDIvg--------~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~-P~~Y~----------- 138 (229)
T PF01269_consen 81 GAASGTTVSHVSDIVG--------PDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARH-PEKYR----------- 138 (229)
T ss_dssp TTTTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTS-GGGGT-----------
T ss_pred cccCCCccchhhhccC--------CCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCC-hHHhh-----------
Confidence 3899999999999985 479999999999888888776654 3789988899875 32211
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHH-HHhhccccCcEEEEec--ccC-Ccc
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM-RGISLLKVGGRIVYST--CSM-NPV 157 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~-~Al~lLk~GG~LVYST--CSl-~p~ 157 (648)
.--..+|.|++|+. .| -|.+|+. +|-.+||+||.++-+- -|+ ...
T Consensus 139 ------~lv~~VDvI~~DVa---------Qp----------------~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~ 187 (229)
T PF01269_consen 139 ------MLVEMVDVIFQDVA---------QP----------------DQARIAALNARHFLKPGGHLIISIKARSIDSTA 187 (229)
T ss_dssp ------TTS--EEEEEEE-S---------ST----------------THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS
T ss_pred ------cccccccEEEecCC---------Ch----------------HHHHHHHHHHHhhccCCcEEEEEEecCcccCcC
Confidence 11257999999997 22 3566655 4557999999887664 223 344
Q ss_pred ccHHHHHHHHHhC
Q 006372 158 ENEAVVAEILRKC 170 (648)
Q Consensus 158 ENEaVV~~~L~~~ 170 (648)
..++|.+.-+++.
T Consensus 188 ~p~~vf~~e~~~L 200 (229)
T PF01269_consen 188 DPEEVFAEEVKKL 200 (229)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6677777766543
No 97
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.79 E-value=0.01 Score=61.80 Aligned_cols=130 Identities=15% Similarity=0.233 Sum_probs=92.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||+-|.-...++... +...|+++|+++.=..+.+++++-.+. .++.|.+.|...|....
T Consensus 51 lGaG~G~l~L~la~r~---------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~---------- 111 (248)
T COG4123 51 LGAGNGALGLLLAQRT---------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL---------- 111 (248)
T ss_pred ecCCcCHHHHHHhccC---------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc----------
Confidence 5888888777776642 247899999999999999999987665 47999999988764321
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHH-----HHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL-----QVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~l-----Q~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|+|-||==-.|.- ++++ ....++.. =-.+++.|.++||+||++.+.
T Consensus 112 ---------~~~~fD~Ii~NPPyf~~~~~-~~~~--------~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V---- 169 (248)
T COG4123 112 ---------VFASFDLIICNPPYFKQGSR-LNEN--------PLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV---- 169 (248)
T ss_pred ---------cccccCEEEeCCCCCCCccc-cCcC--------hhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE----
Confidence 12469999999995555543 2222 12222222 246789999999999999886
Q ss_pred CccccHHHHHHHHHhCC
Q 006372 155 NPVENEAVVAEILRKCE 171 (648)
Q Consensus 155 ~p~ENEaVV~~~L~~~~ 171 (648)
+|.|.-.=|-..|++.+
T Consensus 170 ~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 170 HRPERLAEIIELLKSYN 186 (248)
T ss_pred ecHHHHHHHHHHHHhcC
Confidence 77777766777777644
No 98
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.78 E-value=0.011 Score=61.03 Aligned_cols=100 Identities=19% Similarity=0.099 Sum_probs=71.3
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.|+.|.-+..++..+.. +.+.|+++|.++.-+...+.++.+.+.. ++.+...|+..+|.
T Consensus 64 GcGtG~~~~~l~~~~~~-------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~------------- 123 (247)
T PRK15451 64 GCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI------------- 123 (247)
T ss_pred cccCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-------------
Confidence 57788887777765432 4679999999999999999999888764 67777777655431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhh-HHHHHHHHHHHhhccccCcEEEEecc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L-~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
..||.|++-- ++ .-+ ...+..+|.+..+.|||||.++.+.-
T Consensus 124 ----------~~~D~vv~~~------~l---------------~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 124 ----------ENASMVVLNF------TL---------------QFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ----------CCCCEEehhh------HH---------------HhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2377776421 10 001 12246789999999999999999874
No 99
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.78 E-value=0.0031 Score=55.49 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=67.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||++|..+..++..+.. .+...++++|+|+.-+...+++.+..+. ++.....|+..++.
T Consensus 4 lgcG~G~~~~~l~~~~~~------~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~------------- 63 (101)
T PF13649_consen 4 LGCGTGRVTRALARRFDA------GPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF------------- 63 (101)
T ss_dssp ET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH-------------
T ss_pred eecCCcHHHHHHHHHhhh------cccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc-------------
Confidence 479999999999988621 1346899999999999999998887665 67777788766431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 145 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG 145 (648)
....||.|++ ++.. +. ..+ ...+.++|.+..++|+|||
T Consensus 64 --------~~~~~D~v~~----~~~~-~~-------~~~-------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 --------SDGKFDLVVC----SGLS-LH-------HLS-------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------HSSSEEEEEE-----TTG-GG-------GSS-------HHHHHHHHHHHHHTEEEEE
T ss_pred --------cCCCeeEEEE----cCCc-cC-------CCC-------HHHHHHHHHHHHHHhCCCC
Confidence 1257999999 1110 10 011 2345788999999999998
No 100
>PRK00811 spermidine synthase; Provisional
Probab=96.77 E-value=0.011 Score=62.56 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=77.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-----CCcEEEeecccccCCCcccCCCCCC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHFPGCRANKNFSS 76 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-----~~nv~vtn~Da~~~p~~~~~~~~~~ 76 (648)
+++.|+-+..++.. .+...|+++|+|+.-+++.++.+..++ -+++.++..|+..|...
T Consensus 84 G~G~G~~~~~~l~~---------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-------- 146 (283)
T PRK00811 84 GGGDGGTLREVLKH---------PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-------- 146 (283)
T ss_pred ecCchHHHHHHHcC---------CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--------
Confidence 34556665555432 123589999999999999998887653 46788999998775311
Q ss_pred CCCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCc
Q 006372 77 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 156 (648)
Q Consensus 77 ~~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p 156 (648)
...+||.|++|.+ .| |.+. .+-...+++..+.+.|++||++|.-+-| |
T Consensus 147 ------------~~~~yDvIi~D~~---------dp-----~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~~--~ 194 (283)
T PRK00811 147 ------------TENSFDVIIVDST---------DP-----VGPA----EGLFTKEFYENCKRALKEDGIFVAQSGS--P 194 (283)
T ss_pred ------------CCCcccEEEECCC---------CC-----CCch----hhhhHHHHHHHHHHhcCCCcEEEEeCCC--c
Confidence 1257999999974 11 1111 1123567788889999999998875433 3
Q ss_pred cccHHHHHHHHHh
Q 006372 157 VENEAVVAEILRK 169 (648)
Q Consensus 157 ~ENEaVV~~~L~~ 169 (648)
......+..+++.
T Consensus 195 ~~~~~~~~~i~~t 207 (283)
T PRK00811 195 FYQADEIKDMHRK 207 (283)
T ss_pred ccCHHHHHHHHHH
Confidence 3344555555544
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.022 Score=60.24 Aligned_cols=140 Identities=19% Similarity=0.307 Sum_probs=86.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|+++|--+..++... +...|+|.|+|+.-+..-+.|++++|..++.++..| -|..+
T Consensus 117 lGTGSG~iai~la~~~---------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~------------ 173 (280)
T COG2890 117 LGTGSGAIAIALAKEG---------PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPL------------ 173 (280)
T ss_pred ecCChHHHHHHHHhhC---------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--ccccc------------
Confidence 6888888887776542 457999999999999999999999998665555443 22211
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCc-----chhhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV-----GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~-----~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
..+||.|++-||==-.-.....|.. .+..| ....+| ..-++|+..+..+|++||.++. =++.+
T Consensus 174 ---------~~~fDlIVsNPPYip~~~~~~~~~~-~~~EP~~Al~~g~dGl-~~~~~i~~~a~~~l~~~g~l~l-e~g~~ 241 (280)
T COG2890 174 ---------RGKFDLIVSNPPYIPAEDPELLPEV-VRYEPLLALVGGGDGL-EVYRRILGEAPDILKPGGVLIL-EIGLT 241 (280)
T ss_pred ---------CCceeEEEeCCCCCCCcccccChhh-hccCHHHHHccCccHH-HHHHHHHHhhHHHcCCCcEEEE-EECCC
Confidence 1379999999993211100001111 01111 111222 3567899999999999776654 34443
Q ss_pred ccccHHHHHHHHHhCCCceEEEeC
Q 006372 156 PVENEAVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 156 p~ENEaVV~~~L~~~~g~veLvd~ 179 (648)
. .+.|.+++.+.+. +..+..
T Consensus 242 q---~~~v~~~~~~~~~-~~~v~~ 261 (280)
T COG2890 242 Q---GEAVKALFEDTGF-FEIVET 261 (280)
T ss_pred c---HHHHHHHHHhcCC-ceEEEE
Confidence 2 4556666666553 444443
No 102
>PRK04457 spermidine synthase; Provisional
Probab=96.68 E-value=0.012 Score=61.52 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=78.1
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-CCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
++.|.-+..++.. .|...|+++|+|+.-++..++++...+ .+++.++..|+..+...
T Consensus 75 ~G~G~l~~~l~~~---------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~------------- 132 (262)
T PRK04457 75 LGGGSLAKFIYTY---------LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV------------- 132 (262)
T ss_pred CCHhHHHHHHHHh---------CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-------------
Confidence 4555555555543 246789999999999988887764333 36788999998765210
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHH
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEA 161 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEa 161 (648)
....||.|++|+- .+.+. |. +-...+++..+.+.|+|||+++.-..+-.+ ....
T Consensus 133 -------~~~~yD~I~~D~~-~~~~~----~~-------------~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~ 186 (262)
T PRK04457 133 -------HRHSTDVILVDGF-DGEGI----ID-------------ALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDR 186 (262)
T ss_pred -------CCCCCCEEEEeCC-CCCCC----cc-------------ccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHH
Confidence 0146999999963 22221 11 011357899999999999999986655433 2344
Q ss_pred HHHHHHHhCCC
Q 006372 162 VVAEILRKCEG 172 (648)
Q Consensus 162 VV~~~L~~~~g 172 (648)
+++.+-+-+++
T Consensus 187 ~l~~l~~~F~~ 197 (262)
T PRK04457 187 YLERLESSFEG 197 (262)
T ss_pred HHHHHHHhcCC
Confidence 55544444443
No 103
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.68 E-value=0.015 Score=57.46 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=72.0
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
||+.|+-....+.+..+.......-...+++.|+|.+-++..+.|+++.|... +.+.+.|+..++.
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~------------- 102 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL------------- 102 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG-------------
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc-------------
Confidence 56777776665444332100000002348999999999999999999999864 7778888887651
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
....||.|++|+| |.. .......+..+-..++..+.+.|++ ++|+-|++
T Consensus 103 --------~~~~~d~IvtnPP-------------yG~-r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~ 151 (179)
T PF01170_consen 103 --------PDGSVDAIVTNPP-------------YGR-RLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTS 151 (179)
T ss_dssp --------TTSBSCEEEEE---------------STT-SHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEES
T ss_pred --------ccCCCCEEEECcc-------------hhh-hccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEC
Confidence 0146899999999 222 1123345688889999999999998 55555554
No 104
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.58 E-value=0.0067 Score=60.79 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=86.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+|+|-|..+.++|..- |.-.++++|+...++......+.+.+.+|+.+++.||..+....+
T Consensus 24 IG~G~G~~l~~~A~~~---------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~---------- 84 (195)
T PF02390_consen 24 IGCGKGEFLIELAKRN---------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF---------- 84 (195)
T ss_dssp ET-TTSHHHHHHHHHS---------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS----------
T ss_pred ecCCCCHHHHHHHHHC---------CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc----------
Confidence 3788999999998762 567899999999999999999999999999999999987432111
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
....+|+|.+==| +| |.|-.... .+ -+|..+|..-.+.|++||.|...| .++
T Consensus 85 --------~~~~v~~i~i~FP---------DP--WpK~rH~k-rR--l~~~~fl~~~~~~L~~gG~l~~~T------D~~ 136 (195)
T PF02390_consen 85 --------PPGSVDRIYINFP---------DP--WPKKRHHK-RR--LVNPEFLELLARVLKPGGELYFAT------DVE 136 (195)
T ss_dssp --------TTTSEEEEEEES----------------SGGGGG-GS--TTSHHHHHHHHHHEEEEEEEEEEE------S-H
T ss_pred --------cCCchheEEEeCC---------CC--Ccccchhh-hh--cCCchHHHHHHHHcCCCCEEEEEe------CCH
Confidence 1246788888655 33 43311100 11 146677888889999999998777 555
Q ss_pred HHHHHHHHhC---CCceEEEe
Q 006372 161 AVVAEILRKC---EGSVELVD 178 (648)
Q Consensus 161 aVV~~~L~~~---~g~veLvd 178 (648)
....++++.. .+.++.+.
T Consensus 137 ~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 137 EYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp HHHHHHHHHHHHHSTTEEEE-
T ss_pred HHHHHHHHHHHhcCcCeEEcc
Confidence 6666666532 22456553
No 105
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.58 E-value=0.017 Score=57.56 Aligned_cols=98 Identities=15% Similarity=0.020 Sum_probs=67.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|+.|.-+.+|++. ...|+|+|.++.-++.++.+++..+..++.+...|...++.
T Consensus 37 iGcG~G~~a~~La~~-----------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~------------- 92 (197)
T PRK11207 37 LGCGNGRNSLYLAAN-----------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF------------- 92 (197)
T ss_pred ECCCCCHHHHHHHHC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-------------
Confidence 468899988888763 24799999999999999888888777777776666544320
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
...||.|++=. ++. -+.+ .....++.+..++|||||.+++.+
T Consensus 93 ---------~~~fD~I~~~~------~~~-------~~~~-------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 93 ---------DGEYDFILSTV------VLM-------FLEA-------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred ---------CCCcCEEEEec------chh-------hCCH-------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 14599998621 110 0011 124568899999999999976643
No 106
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.55 E-value=0.034 Score=61.37 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=79.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC---cEEEeecccccCCCcccCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA---NLIVTNHEAQHFPGCRANKNFSSA 77 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~---nv~vtn~Da~~~p~~~~~~~~~~~ 77 (648)
++|+.|--+..++.. .|...|+++|.|+.-+...+++++..+.. ++.+...|+...
T Consensus 235 LGCGtGvi~i~la~~---------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~------------ 293 (378)
T PRK15001 235 LGCGNGVIGLTLLDK---------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG------------ 293 (378)
T ss_pred EeccccHHHHHHHHh---------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc------------
Confidence 467888888777665 25679999999999999999999877642 455554443210
Q ss_pred CCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcc
Q 006372 78 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 157 (648)
Q Consensus 78 ~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ 157 (648)
....+||.|++.||---... ++. ..-.+++..|.+.|++||+|...+=...+
T Consensus 294 ----------~~~~~fDlIlsNPPfh~~~~----------~~~-------~ia~~l~~~a~~~LkpGG~L~iV~nr~l~- 345 (378)
T PRK15001 294 ----------VEPFRFNAVLCNPPFHQQHA----------LTD-------NVAWEMFHHARRCLKINGELYIVANRHLD- 345 (378)
T ss_pred ----------CCCCCEEEEEECcCcccCcc----------CCH-------HHHHHHHHHHHHhcccCCEEEEEEecCcC-
Confidence 01146999999999532111 111 12246899999999999988877533322
Q ss_pred ccHHHHHHHHHhCCCceEEE
Q 006372 158 ENEAVVAEILRKCEGSVELV 177 (648)
Q Consensus 158 ENEaVV~~~L~~~~g~veLv 177 (648)
....|++.-|.++.+
T Consensus 346 -----y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 -----YFHKLKKIFGNCTTI 360 (378)
T ss_pred -----HHHHHHHHcCCceEE
Confidence 234455433455554
No 107
>PRK01581 speE spermidine synthase; Validated
Probab=96.53 E-value=0.013 Score=64.12 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=77.7
Q ss_pred CEEEEEEcCChHHHHHHHHH--H---HH--hCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEc
Q 006372 27 NGMVIANDLDVQRCNLLIHQ--T---KR--MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCD 99 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~--l---kR--lg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlD 99 (648)
-..|+++|+|+.-+++.+.. + .+ +.-+++.+...||..|... ....||.|++|
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--------------------~~~~YDVIIvD 233 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--------------------PSSLYDVIIID 233 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--------------------cCCCccEEEEc
Confidence 46899999999988887751 1 11 2347899999998876321 12469999999
Q ss_pred CCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHH---HHHHHhCCCceEE
Q 006372 100 VPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVV---AEILRKCEGSVEL 176 (648)
Q Consensus 100 vPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV---~~~L~~~~g~veL 176 (648)
.| ++. . . ... .-...+.+..+.+.|+|||++|.-.- +|.....++ ...|++.+..+.
T Consensus 234 l~---DP~------~-----~-~~~--~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~~~~i~~tL~~af~~v~- 293 (374)
T PRK01581 234 FP---DPA------T-----E-LLS--TLYTSELFARIATFLTEDGAFVCQSN--SPADAPLVYWSIGNTIEHAGLTVK- 293 (374)
T ss_pred CC---Ccc------c-----c-chh--hhhHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHHHHHHHHHHHHhCCceE-
Confidence 76 111 0 0 011 11236778889999999999887644 344555553 444455443333
Q ss_pred EeCCCcCCccccCCCcccccccc
Q 006372 177 VDVSNEVPQLIHRPGLRKWKVRD 199 (648)
Q Consensus 177 vd~s~~lP~l~~~pGl~~W~v~~ 199 (648)
......|.+ +|...|.+..
T Consensus 294 -~y~t~vPsy---g~~WgF~~as 312 (374)
T PRK01581 294 -SYHTIVPSF---GTDWGFHIAA 312 (374)
T ss_pred -EEEEecCCC---CCceEEEEEe
Confidence 333346654 4444444443
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.53 E-value=0.02 Score=57.24 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=70.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
++|++|.-+.+++.... ....++++|.++..+...+.++...+. .++.+...|+..++.
T Consensus 58 iG~G~G~~~~~l~~~~~--------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------------ 117 (239)
T PRK00216 58 LACGTGDLAIALAKAVG--------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------------ 117 (239)
T ss_pred eCCCCCHHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------------
Confidence 47899999999887642 146899999999999999888766443 356667666655321
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|++.- .+. .+. + ...+|..+.++|++||++++.+-+.
T Consensus 118 ---------~~~~~D~I~~~~------~l~-------~~~--~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 118 ---------PDNSFDAVTIAF------GLR-------NVP--D-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ---------CCCCccEEEEec------ccc-------cCC--C-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 114699998621 111 010 0 1357889999999999999876554
No 109
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.53 E-value=0.034 Score=59.25 Aligned_cols=176 Identities=20% Similarity=0.270 Sum_probs=108.5
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 83 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~ 83 (648)
+-||.|-.|++.+. +.|.++|+|.|+.-+..-+..++.++ .++.+++.....+.....
T Consensus 33 G~GGHS~~iL~~l~--------~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~------------- 90 (314)
T COG0275 33 GAGGHSRAILEKLP--------DLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALK------------- 90 (314)
T ss_pred CCcHhHHHHHHhCC--------CCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHH-------------
Confidence 56999999988764 36889999999999999988888776 567777665444332110
Q ss_pred cccccccccccEEEEcCCCCCC--------------Cc--cccCcc-------cccccCcchh-----------------
Q 006372 84 SESNMGQLLFDRVLCDVPCSGD--------------GT--LRKAPD-------IWRKWNVGLG----------------- 123 (648)
Q Consensus 84 ~~~~~~~~~FDrILlDvPCSGd--------------Gt--lrk~p~-------i~~kws~~~~----------------- 123 (648)
.....++|-||+|---|+- |. ||-+++ +...|+..++
T Consensus 91 ---~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~arrIA 167 (314)
T COG0275 91 ---ELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRIA 167 (314)
T ss_pred ---hcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHhhHHHHH
Confidence 0113579999999877663 22 233322 1111111000
Q ss_pred --------------------------------------------------hhhHHHHHHHHHHHhhccccCcEEEE-ecc
Q 006372 124 --------------------------------------------------NGLHSLQVQIAMRGISLLKVGGRIVY-STC 152 (648)
Q Consensus 124 --------------------------------------------------~~L~~lQ~~IL~~Al~lLk~GG~LVY-STC 152 (648)
..|..+ .+.|..|..+|+|||||+- |=|
T Consensus 168 ~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L-~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 168 RAIVERRKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEEL-EEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHhccCCCccHHHHHHHHHHhCCchhcccCCCcchhhhhhheeeehhHHHHH-HHHHHHHHHhhCCCcEEEEEEec
Confidence 112222 3568899999999998764 446
Q ss_pred cCCccccHHHHHHHHHhCCCceEEEeCCCcCCccccCCCccc-cccccCCccccchhhHHhhhh
Q 006372 153 SMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRK-WKVRDKGIWLASHKHVRKFRR 215 (648)
Q Consensus 153 Sl~p~ENEaVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~-W~v~~~~~~~~~~~~~~~~~~ 215 (648)
|+ |+ .+|.++.++... ..++..||- ..+|-.. .+...+.....|.+++..+-|
T Consensus 247 SL---ED-RiVK~ff~~~s~----~~~p~~lP~--~~~~~~~~~~~itkK~i~ps~~Ei~~NpR 300 (314)
T COG0275 247 SL---ED-RIVKNFFKELSK----PGVPKGLPV--TEEGPALKFKLITKKPIMPSEEEIEANPR 300 (314)
T ss_pred ch---HH-HHHHHHHHHhcc----cCCCCCCCc--ccccccchhhhccCCCcCCCHHHHHhCcc
Confidence 66 54 788888887643 556667773 2333222 244445556677777765543
No 110
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.52 E-value=0.024 Score=61.28 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=64.5
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.|+.|.-+..|+.. .+.|+++|.+.+.+...+.+.+..+. .++.+.+.++..++.
T Consensus 139 GCG~G~~s~~La~~-----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------------- 194 (322)
T PLN02396 139 GCGGGLLSEPLARM-----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------------- 194 (322)
T ss_pred eCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------------
Confidence 46777776666542 35899999999999888876554433 467777777665431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
....||.|++-- ++-.-++ ...+|....++|||||+++.+|
T Consensus 195 --------~~~~FD~Vi~~~------vLeHv~d----------------~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 195 --------EGRKFDAVLSLE------VIEHVAN----------------PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred --------ccCCCCEEEEhh------HHHhcCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 125799999821 2211111 1346888889999999999886
No 111
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.01 Score=60.90 Aligned_cols=130 Identities=25% Similarity=0.343 Sum_probs=74.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||||||-+-.|++.|.............|||+|+.+- ...+.|+.+..|-++-....
T Consensus 48 LCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae----------- 105 (294)
T KOG1099|consen 48 LCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAE----------- 105 (294)
T ss_pred hhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHH-----------
Confidence 69999999999998887532211011225999997431 23456776666654421100
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHH----HHHHHHHHHhh----ccccCcEEEEecc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS----LQVQIAMRGIS----LLKVGGRIVYSTC 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~----lQ~~IL~~Al~----lLk~GG~LVYSTC 152 (648)
.--..+...+-|.|+||.- ||+ .+||. .|.+||..|+. .||+||..|-
T Consensus 106 --~Ii~hfggekAdlVvcDGA----------PDv---------TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa--- 161 (294)
T KOG1099|consen 106 --AIIEHFGGEKADLVVCDGA----------PDV---------TGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA--- 161 (294)
T ss_pred --HHHHHhCCCCccEEEeCCC----------CCc---------cccccHHHHHHHHHHHHHHHHHhheecCCCeeeh---
Confidence 0001122357899999963 554 22333 47778887765 5899998863
Q ss_pred cCCccccHHHHHHHHHhCCCceEE
Q 006372 153 SMNPVENEAVVAEILRKCEGSVEL 176 (648)
Q Consensus 153 Sl~p~ENEaVV~~~L~~~~g~veL 176 (648)
-+..-++-..+..-|+.+-..|-+
T Consensus 162 KifRg~~tslLysql~~ff~kv~~ 185 (294)
T KOG1099|consen 162 KIFRGRDTSLLYSQLRKFFKKVTC 185 (294)
T ss_pred hhhccCchHHHHHHHHHHhhceee
Confidence 234444545555555554334444
No 112
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.43 E-value=0.011 Score=61.54 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=62.1
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 104 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSG 104 (648)
+.|.|+++|.++.+...-+.++++.|. .+|.+...+|.....-.... ......||.|++|+-
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~--------------~~~~~~fD~iFiDad--- 165 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED--------------GKYHGTFDFIFVDAD--- 165 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc--------------cccCCcccEEEecCC---
Confidence 368999999999999999999999996 56888888876532110000 000157999999974
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
.......+..++++|++||.||.=-
T Consensus 166 ----------------------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 166 ----------------------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred ----------------------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1112345677789999999998643
No 113
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.42 E-value=0.0036 Score=67.09 Aligned_cols=180 Identities=22% Similarity=0.263 Sum_probs=92.1
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
-+-||.|..|++.+ +.|.|+|+|.|+.-+....++++.. ..++.+.+.....+.......
T Consensus 29 ~G~GGHS~aiL~~~---------~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~---------- 88 (310)
T PF01795_consen 29 FGGGGHSKAILEKL---------PNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKEL---------- 88 (310)
T ss_dssp -TTSHHHHHHHHT----------TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHT----------
T ss_pred CCcHHHHHHHHHhC---------CCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHc----------
Confidence 46799999998875 3599999999998877665554433 457888887766654322100
Q ss_pred ccccccccccccEEEEcCCCCCC--------------Cc--cccCccc-------ccccCc-------------------
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGD--------------GT--LRKAPDI-------WRKWNV------------------- 120 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGd--------------Gt--lrk~p~i-------~~kws~------------------- 120 (648)
.....+|.||+|--+|+. |- ||-+|+. ...|+.
T Consensus 89 -----~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~I~~~yGee~~a~~I 163 (310)
T PF01795_consen 89 -----NGINKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELARIFREYGEEKFARRI 163 (310)
T ss_dssp -----TTTS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHHHHHHHH--TTHHHH
T ss_pred -----cCCCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHHHHHhcCchhHHHHH
Confidence 023579999999999874 22 2334421 000100
Q ss_pred ----------------ch-----------------h---------------hhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 121 ----------------GL-----------------G---------------NGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 121 ----------------~~-----------------~---------------~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
.. . .+|..| ...|..|..+|+|||+||--
T Consensus 164 A~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~L-~~~L~~a~~~L~~gGrl~VI-- 240 (310)
T PF01795_consen 164 ARAIVEARKKKPITTTKELAEIIEKAVPKKRRRRKIHPATRVFQALRIAVNDELEEL-ERGLEAAPDLLKPGGRLVVI-- 240 (310)
T ss_dssp HHHHHHHHHHSS--BHHHHHHHHHHHS-HHHCC-SS-TTHHHHHHHHHHHCTHHHHH-HHHHHHHHHHEEEEEEEEEE--
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCcccccccCCHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCcEEEEE--
Confidence 00 0 123333 34677889999999998755
Q ss_pred cCCccccHHHHHHHHHhCCCceEEEeCCCcCCccccCCCccccccccCCccccchhhHHhhhh
Q 006372 153 SMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRR 215 (648)
Q Consensus 153 Sl~p~ENEaVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~W~v~~~~~~~~~~~~~~~~~~ 215 (648)
|++..|+ .+|..+++...... .+...+|.. ..+....|+...+.....|.+|+..+.|
T Consensus 241 SFHSLED-RiVK~~f~~~~~~~---~~p~~lp~~-~~~~~~~~~~i~kk~i~ps~~Ei~~NpR 298 (310)
T PF01795_consen 241 SFHSLED-RIVKQFFRELAKSC---KCPPGLPVC-ECGKHPKFKLITKKPITPSEEEIEENPR 298 (310)
T ss_dssp ESSHHHH-HHHHHHHHCCSSC----------------------EESESS-B---HHHHHH-GG
T ss_pred Eecchhh-HHHHHHHHHhcccC---CCccccccc-ccccccceEEccCCccCCChhhhhcCCc
Confidence 5666676 57777777654221 222334421 1122334776666667788888877655
No 114
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.013 Score=59.24 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=80.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||||||-+-.++..+.. +|.|+|+|+.+-.. .+++..+..|...-+...-
T Consensus 52 LGAAPGgWsQva~~~~~~--------~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~---------- 102 (205)
T COG0293 52 LGAAPGGWSQVAAKKLGA--------GGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEK---------- 102 (205)
T ss_pred cCCCCCcHHHHHHHHhCC--------CCcEEEEECccccc-----------CCCceEEeeeccCccHHHH----------
Confidence 699999999999888753 57799999876331 2566667666554211100
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
.. .......+|.|+.|+- |++-..|+.+... ...+=...+.-|...|++||..|- ....-+++
T Consensus 103 -l~--~~l~~~~~DvV~sD~a----------p~~~g~~~~Dh~r-~~~L~~~a~~~a~~vL~~~G~fv~---K~fqg~~~ 165 (205)
T COG0293 103 -LL--EALGGAPVDVVLSDMA----------PNTSGNRSVDHAR-SMYLCELALEFALEVLKPGGSFVA---KVFQGEDF 165 (205)
T ss_pred -HH--HHcCCCCcceEEecCC----------CCcCCCccccHHH-HHHHHHHHHHHHHHeeCCCCeEEE---EEEeCCCH
Confidence 00 0011234799999974 3333344443332 222333456667889999998864 45666888
Q ss_pred HHHHHHHHhCCCceEE
Q 006372 161 AVVAEILRKCEGSVEL 176 (648)
Q Consensus 161 aVV~~~L~~~~g~veL 176 (648)
+.+-+.++++-..++.
T Consensus 166 ~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 166 EDLLKALRRLFRKVKI 181 (205)
T ss_pred HHHHHHHHHhhceeEE
Confidence 8888888875444443
No 115
>PRK03612 spermidine synthase; Provisional
Probab=96.38 E-value=0.013 Score=67.07 Aligned_cols=118 Identities=18% Similarity=0.157 Sum_probs=73.6
Q ss_pred EEEEEEcCChHHHHHHHHH--HHHh-----CCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcC
Q 006372 28 GMVIANDLDVQRCNLLIHQ--TKRM-----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV 100 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~--lkRl-----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDv 100 (648)
..|+++|+|+.=++..+++ +..+ .-+++.+.+.|+..+... ...+||.|++|.
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~--------------------~~~~fDvIi~D~ 381 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK--------------------LAEKFDVIIVDL 381 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--------------------CCCCCCEEEEeC
Confidence 5899999999999988873 3332 236788899998775310 114799999997
Q ss_pred CCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHH---HHHHHHhCCCceEEE
Q 006372 101 PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAV---VAEILRKCEGSVELV 177 (648)
Q Consensus 101 PCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaV---V~~~L~~~~g~veLv 177 (648)
|-.. .|... +-...++++.+.+.|+|||+++-.++|-. -.... +.+.|++.+ +...
T Consensus 382 ~~~~------~~~~~-----------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~~~l~~~g--f~v~ 440 (521)
T PRK03612 382 PDPS------NPALG-----------KLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIEATLEAAG--LATT 440 (521)
T ss_pred CCCC------Ccchh-----------ccchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHHHHHHcC--CEEE
Confidence 6211 11111 01125678888999999999998777533 33344 344444432 3333
Q ss_pred eCCCcCCcc
Q 006372 178 DVSNEVPQL 186 (648)
Q Consensus 178 d~s~~lP~l 186 (648)
......|.+
T Consensus 441 ~~~~~vps~ 449 (521)
T PRK03612 441 PYHVNVPSF 449 (521)
T ss_pred EEEeCCCCc
Confidence 444445654
No 116
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.37 E-value=0.03 Score=58.90 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=89.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+|+++|--+.-|+.-| |.+.|+|+|++...+.+..+|++|++.. .+.|.|++-+.= .
T Consensus 155 lgtGSGaIslsll~~L---------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d---~---------- 212 (328)
T KOG2904|consen 155 LGTGSGAISLSLLHGL---------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD---A---------- 212 (328)
T ss_pred ecCCccHHHHHHHhcC---------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc---c----------
Confidence 4777887777665443 5789999999999999999999999975 478887743220 0
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccc-cCcccccccCcc----hhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVG----LGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlr-k~p~i~~kws~~----~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
..+...-..++|.|++.||==-+--++ -+|++ +.+.+. .+..--..-..++.-|-++|++||.++..+--.
T Consensus 213 ---~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV-~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 213 ---SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV-RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ---ccccccccCceeEEecCCCcccccchhhcCchh-eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 011111236789999999942221111 12333 222221 112223344566777899999999999997644
Q ss_pred CccccHHHHHHHHHh
Q 006372 155 NPVENEAVVAEILRK 169 (648)
Q Consensus 155 ~p~ENEaVV~~~L~~ 169 (648)
.+.-..|+.++..
T Consensus 289 --~~~~~lv~~~m~s 301 (328)
T KOG2904|consen 289 --KEHSYLVRIWMIS 301 (328)
T ss_pred --ccCcHHHHHHHHh
Confidence 4555667766653
No 117
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.34 E-value=0.022 Score=56.28 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=67.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++++|.-+..++.... ..+.++++|+++..+...+++.. ...++.+...|+..++.
T Consensus 46 iG~G~G~~~~~~~~~~~--------~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~------------- 102 (223)
T TIGR01934 46 VACGTGDLAIELAKSAP--------DRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF------------- 102 (223)
T ss_pred eCCCCChhHHHHHHhcC--------CCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC-------------
Confidence 36788998888876542 12689999999998888887765 33456777777665431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|++-- .+..-++ . ..+|.++.++|+|||+++..+.+.
T Consensus 103 --------~~~~~D~i~~~~------~~~~~~~---------~-------~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 103 --------EDNSFDAVTIAF------GLRNVTD---------I-------QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred --------CCCcEEEEEEee------eeCCccc---------H-------HHHHHHHHHHcCCCcEEEEEEecC
Confidence 014699998621 1111111 0 257899999999999999876653
No 118
>PHA03411 putative methyltransferase; Provisional
Probab=96.31 E-value=0.04 Score=58.29 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=78.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.|.-+.+++... +...|+++|+++.=+...+++ .+++.+.+.|+..++.
T Consensus 71 LGcGsGilsl~la~r~---------~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~~------------- 123 (279)
T PHA03411 71 LCAGIGRLSFCMLHRC---------KPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFES------------- 123 (279)
T ss_pred cCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhcc-------------
Confidence 5899998888776642 135899999999766655543 3467778888765421
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHH-HHHHHHHHhhccccCcEE--EEec-----c
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL-QVQIAMRGISLLKVGGRI--VYST-----C 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~l-Q~~IL~~Al~lLk~GG~L--VYST-----C 152 (648)
..+||.|+++||--....-.+ .-|..|+-.. .....+ =.+.|..+..+|+|+|.+ +||. .
T Consensus 124 ---------~~kFDlIIsNPPF~~l~~~d~--~~~~~~~GG~-~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~ 191 (279)
T PHA03411 124 ---------NEKFDVVISNPPFGKINTTDT--KDVFEYTGGE-FEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDG 191 (279)
T ss_pred ---------cCCCcEEEEcCCccccCchhh--hhhhhhccCc-cccccccHHHHHhhhHheecCCceEEEEEeccccccc
Confidence 146999999999544322111 1122222100 011111 246788888999999954 5776 4
Q ss_pred cCCccccHHHHHHHHHhCC
Q 006372 153 SMNPVENEAVVAEILRKCE 171 (648)
Q Consensus 153 Sl~p~ENEaVV~~~L~~~~ 171 (648)
|+.| +-...+|+.+|
T Consensus 192 sl~~----~~y~~~l~~~g 206 (279)
T PHA03411 192 TMKS----NKYLKWSKQTG 206 (279)
T ss_pred cCCH----HHHHHHHHhcC
Confidence 5555 44667788775
No 119
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.25 E-value=0.07 Score=57.50 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-CCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.|+.|.-+..++.. +.+.|+++|.+..-+.......+..+ ..++.+...|...+|.
T Consensus 130 GCG~G~~~~~la~~----------g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~------------- 186 (322)
T PRK15068 130 GCGNGYHMWRMLGA----------GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA------------- 186 (322)
T ss_pred ccCCcHHHHHHHHc----------CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------------
Confidence 47888888877664 13479999998754332222222222 2467777776655432
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
...||.|++ .|++-+.. ++ ..+|.++.+.|+|||++|.+|-.
T Consensus 187 ---------~~~FD~V~s------~~vl~H~~------dp----------~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 187 ---------LKAFDTVFS------MGVLYHRR------SP----------LDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred ---------cCCcCEEEE------CChhhccC------CH----------HHHHHHHHHhcCCCcEEEEEEEE
Confidence 156999996 23432111 11 34689999999999999988643
No 120
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.18 E-value=0.018 Score=59.28 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=88.0
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
++|-|..++++|.. .|.--.+++|+....+..+...+++++++|+.++++||..+..-..
T Consensus 56 GfG~G~~l~~~A~~---------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~----------- 115 (227)
T COG0220 56 GFGMGEFLVEMAKK---------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI----------- 115 (227)
T ss_pred CCCCCHHHHHHHHH---------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-----------
Confidence 67888888888775 2567889999999999999999999999999999999987532211
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHH
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEA 161 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEa 161 (648)
.....|+|.+==| |=|.|-... .=-=+|...|....+.|++||.|-..| .||.
T Consensus 116 -------~~~sl~~I~i~FP-----------DPWpKkRH~---KRRl~~~~fl~~~a~~Lk~gG~l~~aT------D~~~ 168 (227)
T COG0220 116 -------PDGSLDKIYINFP-----------DPWPKKRHH---KRRLTQPEFLKLYARKLKPGGVLHFAT------DNEE 168 (227)
T ss_pred -------CCCCeeEEEEECC-----------CCCCCcccc---ccccCCHHHHHHHHHHccCCCEEEEEe------cCHH
Confidence 1135788888554 334331110 011257888999999999999999998 6677
Q ss_pred HHHHHH
Q 006372 162 VVAEIL 167 (648)
Q Consensus 162 VV~~~L 167 (648)
...+.+
T Consensus 169 y~e~~~ 174 (227)
T COG0220 169 YFEWMM 174 (227)
T ss_pred HHHHHH
Confidence 777733
No 121
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.15 E-value=0.027 Score=57.84 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=64.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-|.++++.. +.+.|+++|.++..+...+.+ .+++.+...|+..++.
T Consensus 38 iGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~~------------- 90 (258)
T PRK01683 38 LGCGPGNSTELLVERW---------PAARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQP------------- 90 (258)
T ss_pred EcccCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccCC-------------
Confidence 3689999998887763 357899999999877766544 2456666666654310
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
...||.|++... + .|-+. +..+|.++.+.|||||+++-++
T Consensus 91 ---------~~~fD~v~~~~~------------l--~~~~d--------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 91 ---------PQALDLIFANAS------------L--QWLPD--------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ---------CCCccEEEEccC------------h--hhCCC--------HHHHHHHHHHhcCCCcEEEEEC
Confidence 146999998753 1 12211 2567999999999999998863
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.10 E-value=0.037 Score=57.94 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=67.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhC----CCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 102 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPC 102 (648)
...|+++|+|+.-++..++.+..++ .+++.+...|+..+... ....||.|++|++-
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--------------------~~~~yDvIi~D~~~ 155 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--------------------TENTFDVIIVDSTD 155 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh--------------------CCCCccEEEEeCCC
Confidence 4579999999998898888776543 35677777777654210 02579999999862
Q ss_pred CCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHH
Q 006372 103 SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 168 (648)
Q Consensus 103 SGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~ 168 (648)
..|. . ..| ...+.+..+.++|+|||+++..++|. .-+...+..+++
T Consensus 156 -~~~~-------------~--~~l--~~~ef~~~~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~ 201 (270)
T TIGR00417 156 -PVGP-------------A--ETL--FTKEFYELLKKALNEDGIFVAQSESP--WIQLELITDLKR 201 (270)
T ss_pred -CCCc-------------c--cch--hHHHHHHHHHHHhCCCcEEEEcCCCc--ccCHHHHHHHHH
Confidence 1111 0 011 22567788899999999999987763 333455544443
No 123
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.06 E-value=0.031 Score=56.48 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=67.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+.+++.. ...|+++|.++..+..++.++.+.+. ++.+...++..++..
T Consensus 55 iG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~------------ 110 (233)
T PRK05134 55 VGCGGGILSESMARL-----------GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE------------ 110 (233)
T ss_pred eCCCCCHHHHHHHHc-----------CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh------------
Confidence 467888877776553 13689999999999988888877665 344554554433210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
....||.|++.-.+... ++ ...+|.++.++|++||+++.+++.-.
T Consensus 111 --------~~~~fD~Ii~~~~l~~~------~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 111 --------HPGQFDVVTCMEMLEHV------PD----------------PASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred --------cCCCccEEEEhhHhhcc------CC----------------HHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 12579999984321111 11 13568999999999999999987543
No 124
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.04 E-value=0.046 Score=55.71 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.|++|.-+..++..+.. |.+.|+++|.++.-+...+++++..+. .++.++..|+..++.
T Consensus 61 GcG~G~~~~~l~~~~~~-------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------- 120 (239)
T TIGR00740 61 GCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------------- 120 (239)
T ss_pred cCCCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-------------
Confidence 47889888888776532 357899999999999999988887664 467778777765431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
..+|.|++--. + .-+.+ .-...+|.+..+.|||||+++.+.
T Consensus 121 ----------~~~d~v~~~~~------l-------~~~~~-------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 ----------KNASMVILNFT------L-------QFLPP-------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ----------CCCCEEeeecc------h-------hhCCH-------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 23677664221 1 00111 113478999999999999998884
No 125
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.01 E-value=0.029 Score=57.54 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+.|++|.-|.+++.. ...|+++|.++..+...+.+.. ...+.+.|+..+|.
T Consensus 49 iGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~------------- 99 (251)
T PRK10258 49 AGCGPGWMSRYWRER-----------GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPL------------- 99 (251)
T ss_pred eeCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcC-------------
Confidence 357889887776542 2589999999987776654421 22344556554331
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
....||.|++..+ + .|... ...+|.++.+.|||||.++++|-
T Consensus 100 --------~~~~fD~V~s~~~------------l--~~~~d--------~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 100 --------ATATFDLAWSNLA------------V--QWCGN--------LSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred --------CCCcEEEEEECch------------h--hhcCC--------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 1146999986432 1 23221 24678999999999999999874
No 126
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.99 E-value=0.059 Score=60.60 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=72.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++++|+-+..|+... ...|+++|+++.-+...+++...++ .++.+...|....+.
T Consensus 273 iGcG~G~~~~~la~~~----------~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~------------- 328 (475)
T PLN02336 273 VGCGIGGGDFYMAENF----------DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTY------------- 328 (475)
T ss_pred EeccCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCC-------------
Confidence 4788999887776642 2479999999887777666554332 356666666544321
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
....||.|++- +++-.-++ ..++|.++.++|||||+|+.++-...+..-.
T Consensus 329 --------~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 378 (475)
T PLN02336 329 --------PDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLISDYCRSPGTPS 378 (475)
T ss_pred --------CCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCc
Confidence 01469999973 22211111 2367899999999999999887544432222
Q ss_pred HHHHHHHHhC
Q 006372 161 AVVAEILRKC 170 (648)
Q Consensus 161 aVV~~~L~~~ 170 (648)
.....++...
T Consensus 379 ~~~~~~~~~~ 388 (475)
T PLN02336 379 PEFAEYIKQR 388 (475)
T ss_pred HHHHHHHHhc
Confidence 2334444443
No 127
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.057 Score=56.80 Aligned_cols=118 Identities=23% Similarity=0.321 Sum_probs=79.0
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
++||-+..|+..+. |+|.|+.+|.+..|.+...+..++.|.+ |+.++..|-..-- ..
T Consensus 115 GSGSlShaiaraV~--------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F~------------- 172 (314)
T KOG2915|consen 115 GSGSLSHAIARAVA--------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-FL------------- 172 (314)
T ss_pred CcchHHHHHHHhhC--------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-cc-------------
Confidence 56777777776653 7999999999999999999999999975 7778777643310 00
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCc-cccHH
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP-VENEA 161 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p-~ENEa 161 (648)
....++|.|++|.| +|.. -+-+|++.||.+|. --||++| +|--+
T Consensus 173 -----~ks~~aDaVFLDlP---------aPw~------------------AiPha~~~lk~~g~---r~csFSPCIEQvq 217 (314)
T KOG2915|consen 173 -----IKSLKADAVFLDLP---------APWE------------------AIPHAAKILKDEGG---RLCSFSPCIEQVQ 217 (314)
T ss_pred -----ccccccceEEEcCC---------Chhh------------------hhhhhHHHhhhcCc---eEEeccHHHHHHH
Confidence 01378999999999 4432 25667778887663 1367776 34333
Q ss_pred HHHHHHHhCC-CceEEEe
Q 006372 162 VVAEILRKCE-GSVELVD 178 (648)
Q Consensus 162 VV~~~L~~~~-g~veLvd 178 (648)
--..+|+.++ .+++.+.
T Consensus 218 rtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 218 RTCEALRSLGFIEIETVE 235 (314)
T ss_pred HHHHHHHhCCCceEEEEE
Confidence 4445566654 2344444
No 128
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.95 E-value=0.0083 Score=59.92 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=63.0
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCc
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 107 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGt 107 (648)
-+|+|++.|++|...+.+|++--|..|+.|++.||.++.. ...|.|+|.-=
T Consensus 55 ~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----------------------e~ADvvicEml------ 105 (252)
T COG4076 55 ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----------------------ENADVVICEML------ 105 (252)
T ss_pred ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----------------------cccceeHHHHh------
Confidence 5899999999999999999988888999999999998742 34588877421
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEE
Q 006372 108 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 148 (648)
Q Consensus 108 lrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LV 148 (648)
+-.-+-.-|...+.+++++||-.+.+|
T Consensus 106 --------------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 --------------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred --------------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 122355678999999999999988765
No 129
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=95.91 E-value=0.1 Score=56.19 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHH-hC-CCcEEEeecccccCCCcccCCCCCCCCC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MC-TANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkR-lg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
.|+.|.-+..++.. +...|+++|.+..-+..... +++ ++ ..++.+...+...+|.
T Consensus 129 GCG~G~~~~~~~~~----------g~~~v~GiDpS~~ml~q~~~-~~~~~~~~~~v~~~~~~ie~lp~------------ 185 (314)
T TIGR00452 129 GCGSGYHMWRMLGH----------GAKSLVGIDPTVLFLCQFEA-VRKLLDNDKRAILEPLGIEQLHE------------ 185 (314)
T ss_pred ccCCcHHHHHHHHc----------CCCEEEEEcCCHHHHHHHHH-HHHHhccCCCeEEEECCHHHCCC------------
Confidence 46778776665432 13479999998864433221 222 22 2345555555444321
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
...||.|++ .|++-..+ ++ ...|....+.|||||+||.+|..+...+
T Consensus 186 ----------~~~FD~V~s------~gvL~H~~------dp----------~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 186 ----------LYAFDTVFS------MGVLYHRK------SP----------LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred ----------CCCcCEEEE------cchhhccC------CH----------HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 136999997 34432211 11 2468889999999999999987654433
No 130
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=95.86 E-value=0.042 Score=54.96 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=68.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+.+++.. ...++++|.++..+...+.++.+.+..++.+...|+..++.-
T Consensus 52 lG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------ 108 (224)
T TIGR01983 52 VGCGGGLLSEPLARL-----------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK------------ 108 (224)
T ss_pred ECCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC------------
Confidence 467888877776542 135999999999999888888877765566666665544310
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
....||.|++.-. + ... .-...+|.++.++|++||.++.++|.
T Consensus 109 --------~~~~~D~i~~~~~------l-------~~~---------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 109 --------GAKSFDVVTCMEV------L-------EHV---------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred --------CCCCccEEEehhH------H-------HhC---------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 0256999997321 1 100 01235789999999999999988874
No 131
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.86 E-value=0.023 Score=58.78 Aligned_cols=114 Identities=32% Similarity=0.455 Sum_probs=82.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
||.|---+|++.+.. |.|.|+|++-+..--.-|..+.++ .+||+.+-.||++--..+
T Consensus 165 AasGttVSHvSDiVG--------peG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYR------------- 221 (317)
T KOG1596|consen 165 AASGTTVSHVSDIVG--------PEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYR------------- 221 (317)
T ss_pred ccCCceeehhhcccC--------CCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchhee-------------
Confidence 566666677766653 689999999987766677666543 378888888987732111
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHH-HHHHHhhccccCcEEEEe---cccCCccc
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQ-IAMRGISLLKVGGRIVYS---TCSMNPVE 158 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~-IL~~Al~lLk~GG~LVYS---TCSl~p~E 158 (648)
..-...|.|+.|++ .|+ |.+ +..+|-.+||+||-+|.| .|+=+-..
T Consensus 222 -----mlVgmVDvIFaDva---------qpd----------------q~RivaLNA~~FLk~gGhfvisikancidstv~ 271 (317)
T KOG1596|consen 222 -----MLVGMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFVISIKANCIDSTVF 271 (317)
T ss_pred -----eeeeeEEEEeccCC---------Cch----------------hhhhhhhhhhhhhccCCeEEEEEeccccccccc
Confidence 11246899999998 333 333 456888999999988765 69999999
Q ss_pred cHHHHHHHHHh
Q 006372 159 NEAVVAEILRK 169 (648)
Q Consensus 159 NEaVV~~~L~~ 169 (648)
+|+|-+.=.++
T Consensus 272 ae~vFa~Ev~k 282 (317)
T KOG1596|consen 272 AEAVFAAEVKK 282 (317)
T ss_pred HHHHHHHHHHH
Confidence 99998876654
No 132
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.63 E-value=0.046 Score=54.50 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=63.9
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.|++|..+.+++... +.+.++++|.++..+...++.+. +++.++..|...++.
T Consensus 42 G~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~-------------- 94 (240)
T TIGR02072 42 GCGTGYLTRALLKRF---------PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL-------------- 94 (240)
T ss_pred CCCccHHHHHHHHhC---------CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------------
Confidence 578999888887763 34679999999887776655432 366666666655431
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
....||.|++.-.+. |... -.++|.+..++|++||.++.++
T Consensus 95 -------~~~~fD~vi~~~~l~--------------~~~~--------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 95 -------EDSSFDLIVSNLALQ--------------WCDD--------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -------CCCceeEEEEhhhhh--------------hccC--------HHHHHHHHHHHcCCCcEEEEEe
Confidence 114699999864321 1111 0247899999999999999874
No 133
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=95.57 E-value=0.11 Score=54.25 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=86.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC---CcEEEeecccccCCCcccCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHFPGCRANKNFSSA 77 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~---~nv~vtn~Da~~~p~~~~~~~~~~~ 77 (648)
||.+.|=-|.-|+....+... ...+.|+..|+++.-+..-+++.++.+. +++..+..||..+|. .
T Consensus 107 vaGGTGDiaFril~~v~s~~~---~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF-d-------- 174 (296)
T KOG1540|consen 107 VAGGTGDIAFRILRHVKSQFG---DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF-D-------- 174 (296)
T ss_pred ecCCcchhHHHHHHhhccccC---CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC-C--------
Confidence 688899999998887654211 1247999999999988887777766554 358889999988772 1
Q ss_pred CCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcc
Q 006372 78 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 157 (648)
Q Consensus 78 ~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ 157 (648)
...||+.-+- +-||.-+++ .+-|+.|.+.|||||++. |-.++.
T Consensus 175 ------------d~s~D~yTia------fGIRN~th~----------------~k~l~EAYRVLKpGGrf~---cLeFsk 217 (296)
T KOG1540|consen 175 ------------DDSFDAYTIA------FGIRNVTHI----------------QKALREAYRVLKPGGRFS---CLEFSK 217 (296)
T ss_pred ------------CCcceeEEEe------cceecCCCH----------------HHHHHHHHHhcCCCcEEE---EEEccc
Confidence 1457776551 223333332 234899999999999876 988888
Q ss_pred ccHHHHHHHHHhC
Q 006372 158 ENEAVVAEILRKC 170 (648)
Q Consensus 158 ENEaVV~~~L~~~ 170 (648)
+|.+.+.++-...
T Consensus 218 v~~~~l~~fy~~y 230 (296)
T KOG1540|consen 218 VENEPLKWFYDQY 230 (296)
T ss_pred cccHHHHHHHHhh
Confidence 8878888888764
No 134
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.54 E-value=0.055 Score=56.47 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=63.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
+|+.|+-+..|+... .+.|+++|+++.-+...+++... ..++.+...|+...|.
T Consensus 60 GcG~G~~a~~la~~~----------~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~-------------- 113 (263)
T PTZ00098 60 GSGLGGGCKYINEKY----------GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDF-------------- 113 (263)
T ss_pred cCCCChhhHHHHhhc----------CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCC--------------
Confidence 567787777665431 35899999999887777765433 2457777776544221
Q ss_pred cccccccccccccEEEE-cCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 82 IESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILl-DvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
....||.|++ ++-+ .+.. .-...+|.++.++|||||+++-+--
T Consensus 114 -------~~~~FD~V~s~~~l~--------------h~~~-------~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 114 -------PENTFDMIYSRDAIL--------------HLSY-------ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred -------CCCCeEEEEEhhhHH--------------hCCH-------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1156999997 3211 0110 1235789999999999999987643
No 135
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.51 E-value=0.21 Score=50.02 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=67.4
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.|+.|+-+..+++.. +...|+++|.++.-+...++++++.|.. ++.+...|....|.
T Consensus 7 GcG~G~~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~------------- 64 (224)
T smart00828 7 GCGYGSDLIDLAERH---------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF------------- 64 (224)
T ss_pred CCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------------
Confidence 578888888887653 2468999999999888888888887764 56777666533210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
...||.|++- +++..-+ -...+|.++.++|||||+++.++-
T Consensus 65 ---------~~~fD~I~~~------~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 65 ---------PDTYDLVFGF------EVIHHIK----------------DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ---------CCCCCEeehH------HHHHhCC----------------CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1369999841 1110000 124678999999999999997754
No 136
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.49 E-value=0.095 Score=52.12 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=62.4
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.|+.|.-+..|++. .+.|+|+|.++.-+..++++.+..+.+ +.+...|...++ +
T Consensus 38 GcG~G~~a~~la~~-----------g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~---~----------- 91 (195)
T TIGR00477 38 GCGQGRNSLYLSLA-----------GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA---L----------- 91 (195)
T ss_pred CCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---c-----------
Confidence 47888888877653 258999999999999888887776664 444444433221 0
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
...||.|++-... . ..++ .....++..+.++|||||+++.-+
T Consensus 92 --------~~~fD~I~~~~~~------~-------~~~~-------~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 92 --------NEDYDFIFSTVVF------M-------FLQA-------GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred --------cCCCCEEEEeccc------c-------cCCH-------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1359999863321 0 0000 123467899999999999965543
No 137
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.48 E-value=0.055 Score=57.30 Aligned_cols=145 Identities=13% Similarity=0.128 Sum_probs=77.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC--CcEEEeecccccCCCcccCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFPGCRANKNFSSAS 78 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~--~nv~vtn~Da~~~p~~~~~~~~~~~~ 78 (648)
.||+.|+..+.+.+.+.... .....-.++++|+++.-+.+.+-++.-.|. .+..+...|...-+.
T Consensus 53 PacGsG~fL~~~~~~i~~~~--~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~----------- 119 (311)
T PF02384_consen 53 PACGSGGFLVAAMEYIKEKR--NKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDK----------- 119 (311)
T ss_dssp TT-TTSHHHHHHHHHHHTCH--HHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHS-----------
T ss_pred hhhhHHHHHHHHHHhhcccc--cccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccc-----------
Confidence 48999999998888662100 001257899999999988877766644443 333455555432111
Q ss_pred CcCcccccccccccccEEEEcCCCCCCCccccCccc--ccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc--C
Q 006372 79 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI--WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--M 154 (648)
Q Consensus 79 ~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i--~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS--l 154 (648)
.....+||.||..||=+..+. ..+.. -.+|... ...-...+...+.+++++|++||++++-+=+ +
T Consensus 120 --------~~~~~~~D~ii~NPPf~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L 188 (311)
T PF02384_consen 120 --------FIKNQKFDVIIGNPPFGSKEW--KDEELEKDERFKKY-FPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFL 188 (311)
T ss_dssp --------CTST--EEEEEEE--CTCES---STGGGCTTCCCTTC-SSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHH
T ss_pred --------cccccccccccCCCCcccccc--cccccccccccccc-CCCccchhhhhHHHHHhhcccccceeEEecchhh
Confidence 001367999999999776633 11111 0122211 1111223344789999999999987666543 3
Q ss_pred CccccHHHH-HHHHHh
Q 006372 155 NPVENEAVV-AEILRK 169 (648)
Q Consensus 155 ~p~ENEaVV-~~~L~~ 169 (648)
+-..-+.-+ .++|++
T Consensus 189 ~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 189 FSSSSEKKIRKYLLEN 204 (311)
T ss_dssp HGSTHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHhh
Confidence 332223444 455554
No 138
>PLN02672 methionine S-methyltransferase
Probab=95.44 E-value=0.086 Score=65.03 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=90.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC----------------CcEEEeeccccc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----------------ANLIVTNHEAQH 64 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~----------------~nv~vtn~Da~~ 64 (648)
+|++.|--+..++... +.+.|+|+|+++.-+...++|+++++. .++.+.+.|...
T Consensus 125 lG~GSG~Iai~La~~~---------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 125 LGCGNGWISIAIAEKW---------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred EecchHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh
Confidence 4888898888887753 346899999999999999999998643 246667666433
Q ss_pred CCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCcccc-CcccccccCc------------chh----hhhH
Q 006372 65 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNV------------GLG----NGLH 127 (648)
Q Consensus 65 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk-~p~i~~kws~------------~~~----~~L~ 127 (648)
... ....+||.|+.-||==..+-+.. .|++. .+.| -.+ ..=-
T Consensus 196 ~~~--------------------~~~~~fDlIVSNPPYI~~~e~~~l~~eV~-~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 196 YCR--------------------DNNIELDRIVGCIPQILNPNPEAMSKLVT-ENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred hcc--------------------ccCCceEEEEECCCcCCCcchhhcChhhh-hccccccccccCccccccCCCCCCcHH
Confidence 110 00136999999999433322111 11111 1111 000 1122
Q ss_pred HHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCC
Q 006372 128 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 171 (648)
Q Consensus 128 ~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~ 171 (648)
.+-++|+..|.++|+|||.|+ |=+.....++|.++++++.+
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~---lEiG~~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMI---FNMGGRPGQAVCERLFERRG 295 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEE---EEECccHHHHHHHHHHHHCC
Confidence 355899999999999999887 55566678888866777654
No 139
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.27 E-value=0.13 Score=54.15 Aligned_cols=94 Identities=17% Similarity=0.066 Sum_probs=65.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.|+.|.-+..++.. ...|+|+|.++.-+..++++++..+. ++.+...|....+ +
T Consensus 128 GcG~G~~~~~la~~-----------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~---~----------- 181 (287)
T PRK12335 128 GCGQGRNSLYLALL-----------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS---I----------- 181 (287)
T ss_pred CCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc---c-----------
Confidence 56788877777552 25899999999999999999888877 6766666643321 0
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
...||.|++=..+. . .+ ......+|.+..++|+|||+++.
T Consensus 182 --------~~~fD~I~~~~vl~---~----------l~-------~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 --------QEEYDFILSTVVLM---F----------LN-------RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred --------cCCccEEEEcchhh---h----------CC-------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 25699998743210 0 00 12335678999999999999665
No 140
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.21 E-value=0.18 Score=53.50 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=70.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+++++|.-+..++.. .|.+.+++.|. +.-+...++++.+.|.. ++.+...|+...+
T Consensus 156 iG~G~G~~~~~~~~~---------~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~------------- 212 (306)
T TIGR02716 156 VGGGIGDISAAMLKH---------FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES------------- 212 (306)
T ss_pred eCCchhHHHHHHHHH---------CCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-------------
Confidence 357788777777665 24678899997 67788888888888864 5777777754321
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
...+|.|++- + +...|+.. .-.+||+++.+.|+|||+|+-....+...++
T Consensus 213 ----------~~~~D~v~~~------~-------~lh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 213 ----------YPEADAVLFC------R-------ILYSANEQ-------LSTIMCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred ----------CCCCCEEEeE------h-------hhhcCChH-------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 0236887761 1 12234332 2257899999999999999877655554443
No 141
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.15 E-value=0.077 Score=54.59 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=60.2
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 104 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSG 104 (648)
..|.|+|+|+|..-.+.-....++.|.. -+.+...+|..-..-.+ .+.+...||-+++|+=
T Consensus 97 ~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~---------------~~~~~~tfDfaFvDad--- 158 (237)
T KOG1663|consen 97 EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELL---------------ADGESGTFDFAFVDAD--- 158 (237)
T ss_pred CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHH---------------hcCCCCceeEEEEccc---
Confidence 3799999999999888888888888875 35555555543211000 1223478999999973
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
+. .......++++|+|+||.|+|=.
T Consensus 159 -----------K~-----------nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 159 -----------KD-----------NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred -----------hH-----------HHHHHHHHHHhhcccccEEEEec
Confidence 21 11266899999999999999864
No 142
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.92 E-value=0.031 Score=59.70 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=60.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++++.||.|..|++.+. +.|.|+|+|.|+.-+...++.++. ..++.+.+.+...++...-
T Consensus 26 ~TlG~GGhS~~il~~~~--------~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~---------- 85 (296)
T PRK00050 26 GTFGGGGHSRAILERLG--------PKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLA---------- 85 (296)
T ss_pred eCcCChHHHHHHHHhCC--------CCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHH----------
Confidence 47899999999998753 258999999999999998887765 4578888888777643210
Q ss_pred CcccccccccccccEEEEcCCCCCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
. ....||.||+|--||..
T Consensus 86 ------~-~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 86 ------E-GLGKVDGILLDLGVSSP 103 (296)
T ss_pred ------c-CCCccCEEEECCCcccc
Confidence 0 11269999999999876
No 143
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.90 E-value=0.086 Score=54.35 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.|++|.-+.+|+... |.+.|+++|.++.-++..+. .++.+...|+..++.
T Consensus 37 GcG~G~~~~~l~~~~---------p~~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~-------------- 86 (255)
T PRK14103 37 GCGPGNLTRYLARRW---------PGAVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP-------------- 86 (255)
T ss_pred cCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC--------------
Confidence 478888888777653 35689999999876655432 235556666654321
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
...||.|++.... .|-+. +.++|.++.+.|||||+++.+
T Consensus 87 --------~~~fD~v~~~~~l--------------~~~~d--------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 87 --------KPDTDVVVSNAAL--------------QWVPE--------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --------CCCceEEEEehhh--------------hhCCC--------HHHHHHHHHHhCCCCcEEEEE
Confidence 1469999996541 12111 256788999999999999876
No 144
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.35 Score=51.80 Aligned_cols=103 Identities=24% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
+...|+|+|+|+.-+..-++|+++.++.... + +..|... .......||.|.+-
T Consensus 184 GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---~-~~~~~~~-----------------~~~~~~~~DvIVAN------ 236 (300)
T COG2264 184 GAKKVVGVDIDPQAVEAARENARLNGVELLV---Q-AKGFLLL-----------------EVPENGPFDVIVAN------ 236 (300)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCchhh---h-cccccch-----------------hhcccCcccEEEeh------
Confidence 4678999999999999999999999886510 1 1111100 01122579999882
Q ss_pred CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCceEEEeC
Q 006372 106 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 106 Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~veLvd~ 179 (648)
-|+..=.+++.....+|||||+++.|= +.... +..|.+++.+.+ ++++++
T Consensus 237 -------------------ILA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~~g--f~v~~~ 286 (300)
T COG2264 237 -------------------ILAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQAG--FEVVEV 286 (300)
T ss_pred -------------------hhHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHHHHHHhCC--CeEeEE
Confidence 256666788999999999999999998 54444 666777776544 666554
No 145
>PLN02366 spermidine synthase
Probab=94.70 E-value=0.24 Score=53.30 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=58.6
Q ss_pred EEEEEEcCChHHHHHHHHHHHHh----CCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCC
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 103 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRl----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCS 103 (648)
..|+++|+|+.=++..++.+..+ .-+++.++..||..|... .....||.|++|.+-.
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-------------------~~~~~yDvIi~D~~dp 176 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-------------------APEGTYDAIIVDSSDP 176 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-------------------ccCCCCCEEEEcCCCC
Confidence 58999999998777777766543 246799999998775320 0014699999998621
Q ss_pred CCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 104 GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 104 GdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
.| + .-+-...+.+..+.+.|+|||++|-
T Consensus 177 -~~-------------~----~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 177 -VG-------------P----AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred -CC-------------c----hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 11 1 0112346778889999999999864
No 146
>PLN02823 spermine synthase
Probab=94.54 E-value=0.2 Score=54.49 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=59.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHh----CCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 102 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRl----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPC 102 (648)
...|+++|+|+.=+++.++.+... .-+++.+...||..|... ...+||.|++|++=
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~--------------------~~~~yDvIi~D~~d 186 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK--------------------RDEKFDVIIGDLAD 186 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh--------------------CCCCccEEEecCCC
Confidence 357999999999999888776432 246889999999886321 12579999999741
Q ss_pred C-CCCccccCcccccccCcchhhhhHHHHHHHHH-HHhhccccCcEEEEeccc
Q 006372 103 S-GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM-RGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 103 S-GdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~-~Al~lLk~GG~LVYSTCS 153 (648)
. +.|. + .+-...+.+. .+.+.|++||.+|.-.-|
T Consensus 187 p~~~~~----~-------------~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 187 PVEGGP----C-------------YQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ccccCc----c-------------hhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 0 0010 0 0112345565 567899999998754434
No 147
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=94.35 E-value=0.028 Score=49.01 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
|++|.-+..|++.. +.+.++++|+|+.-+...++++...+..+....+.+......
T Consensus 5 cG~G~~~~~l~~~~---------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--------------- 60 (99)
T PF08242_consen 5 CGTGRLLRALLEEL---------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD--------------- 60 (99)
T ss_dssp TTTS-TTTTHHHHC----------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS------------------
T ss_pred ccChHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh---------------
Confidence 67788888887764 368999999999988777777777765544433333222110
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEE
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 147 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~L 147 (648)
......||.|++= +++ .. +... ..+|.++.++|||||+|
T Consensus 61 ----~~~~~~fD~V~~~------~vl-------~~--------l~~~-~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 61 ----YDPPESFDLVVAS------NVL-------HH--------LEDI-EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----CCC----SEEEEE-------TT-------S----------S-H-HHHHHHHTTT-TSS-EE
T ss_pred ----cccccccceehhh------hhH-------hh--------hhhH-HHHHHHHHHHcCCCCCC
Confidence 0001479999962 111 11 1122 37799999999999986
No 148
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.35 Score=51.79 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCC
Q 006372 25 LPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 104 (648)
Q Consensus 25 ~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSG 104 (648)
.|...|+.+|+|..-++.-+.|++..+..+..|...|. |.. -..+||.|++-||=-
T Consensus 180 ~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~--~~~---------------------v~~kfd~IisNPPfh- 235 (300)
T COG2813 180 SPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL--YEP---------------------VEGKFDLIISNPPFH- 235 (300)
T ss_pred CCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc--ccc---------------------ccccccEEEeCCCcc-
Confidence 35779999999999999999999999888753332221 110 013899999999921
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCceEEEe
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 178 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~veLvd 178 (648)
....-.+.+=.+|+..|...|++||.|---.=..-| ....|++.-+.++.+.
T Consensus 236 ----------------~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~------y~~~L~~~Fg~v~~la 287 (300)
T COG2813 236 ----------------AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP------YEKKLKELFGNVEVLA 287 (300)
T ss_pred ----------------CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC------hHHHHHHhcCCEEEEE
Confidence 111224455568999999999999977555445544 3355666555666654
No 149
>PRK06922 hypothetical protein; Provisional
Probab=94.30 E-value=0.23 Score=58.25 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=70.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
.||+|.-+..+++.. |.+.|+|+|.++.-+..++.++...+ .++.+...|+..+|...
T Consensus 426 GCGTG~ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~f------------ 483 (677)
T PRK06922 426 GAGGGVMLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSF------------ 483 (677)
T ss_pred CCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCcccc------------
Confidence 577887777776642 46799999999988888777665554 35666777776544211
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhh-hHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG-LHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~-L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
....||.|++-.+ +. -|..+-+..... -.....++|.++.+.|||||+++-+.=++
T Consensus 484 -------edeSFDvVVsn~v------LH----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 484 -------EKESVDTIVYSSI------LH----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred -------CCCCEEEEEEchH------HH----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 1256999986432 00 000000000000 12345778999999999999998874333
No 150
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.28 E-value=0.17 Score=55.07 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|++|.-+..++..+ +.+.|+++|.++.-+...+++. ...++.+...|+..++.
T Consensus 120 LGcGtG~~~l~La~~~---------~~~~VtgVD~S~~mL~~A~~k~---~~~~i~~i~gD~e~lp~------------- 174 (340)
T PLN02490 120 VGGGTGFTTLGIVKHV---------DAKNVTILDQSPHQLAKAKQKE---PLKECKIIEGDAEDLPF------------- 174 (340)
T ss_pred EecCCcHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhh---hccCCeEEeccHHhCCC-------------
Confidence 3678888777776643 2368999999988766665543 23456666676655431
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
....||.|++- +++. .|.. ..++|.++.++|||||+++..
T Consensus 175 --------~~~sFDvVIs~------~~L~-------~~~d---------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 175 --------PTDYADRYVSA------GSIE-------YWPD---------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred --------CCCceeEEEEc------Chhh-------hCCC---------HHHHHHHHHHhcCCCcEEEEE
Confidence 12469999872 2221 1110 124799999999999999864
No 151
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.26 E-value=0.12 Score=50.01 Aligned_cols=67 Identities=25% Similarity=0.257 Sum_probs=52.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++||+|.-|..+++. .+.|+|+|.|+.-+..+++++.. ..++.+++.|+..++.
T Consensus 20 iG~G~G~lt~~l~~~-----------~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~------------- 73 (169)
T smart00650 20 IGPGKGALTEELLER-----------AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL------------- 73 (169)
T ss_pred ECCCccHHHHHHHhc-----------CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc-------------
Confidence 368899999888764 25799999999999988877754 4578899999877531
Q ss_pred CcccccccccccccEEEEcCC
Q 006372 81 GIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvP 101 (648)
....||.|+.++|
T Consensus 74 --------~~~~~d~vi~n~P 86 (169)
T smart00650 74 --------PKLQPYKVVGNLP 86 (169)
T ss_pred --------cccCCCEEEECCC
Confidence 0135899999998
No 152
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=94.20 E-value=0.22 Score=50.40 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=77.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
+|-|-.|.+|+.. -..|+|.|+++.-+...++++.. .++|.+...|-..+.
T Consensus 52 Cs~G~lT~~LA~r-----------Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~---------------- 102 (201)
T PF05401_consen 52 CSIGVLTERLAPR-----------CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW---------------- 102 (201)
T ss_dssp -TTSHHHHHHGGG-----------EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT------------------
T ss_pred CCccHHHHHHHHh-----------hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC----------------
Confidence 4557777777665 25899999999988888776653 478888877643321
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC-------C
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM-------N 155 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl-------~ 155 (648)
....||.|++ |.-+.. +++ ..-....+.+....|+|||.||..+=.- +
T Consensus 103 ------P~~~FDLIV~----SEVlYY---------L~~------~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh 157 (201)
T PF05401_consen 103 ------PEGRFDLIVL----SEVLYY---------LDD------AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGH 157 (201)
T ss_dssp -------SS-EEEEEE----ES-GGG---------SSS------HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-
T ss_pred ------CCCCeeEEEE----ehHhHc---------CCC------HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCc
Confidence 1267999997 333321 221 1122456788889999999999854221 2
Q ss_pred ccccHHHHHHHHHhCCCceEEEeCCCcCCc
Q 006372 156 PVENEAVVAEILRKCEGSVELVDVSNEVPQ 185 (648)
Q Consensus 156 p~ENEaVV~~~L~~~~g~veLvd~s~~lP~ 185 (648)
+- ..+-|.++|.+.=..++.+.+....++
T Consensus 158 ~~-ga~tv~~~~~~~~~~~~~~~~~~~~~~ 186 (201)
T PF05401_consen 158 AA-GAETVLEMLQEHLTEVERVECRGGSPN 186 (201)
T ss_dssp S---HHHHHHHHHHHSEEEEEEEEE-SSTT
T ss_pred cc-chHHHHHHHHHHhhheeEEEEcCCCCC
Confidence 22 455566666665456788877665553
No 153
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.13 E-value=0.17 Score=57.94 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=87.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++|-|..++++|... |.-.++++|+...++..+...+++.+..|+.+++.|+..+....
T Consensus 354 IG~G~G~~~~~~A~~~---------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~----------- 413 (506)
T PRK01544 354 IGFGMGEHFINQAKMN---------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL----------- 413 (506)
T ss_pred ECCCchHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc-----------
Confidence 3788999999998862 56689999999999999999999999999999888765432211
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
....+|+|.+==| |=|.|-... +---+|...|..-.++||+||.|-..| -++
T Consensus 414 --------~~~sv~~i~i~FP-----------DPWpKkrh~---krRl~~~~fl~~~~~~Lk~gG~i~~~T------D~~ 465 (506)
T PRK01544 414 --------PNNSLDGIYILFP-----------DPWIKNKQK---KKRIFNKERLKILQDKLKDNGNLVFAS------DIE 465 (506)
T ss_pred --------CcccccEEEEECC-----------CCCCCCCCc---cccccCHHHHHHHHHhcCCCCEEEEEc------CCH
Confidence 1245788887544 344331111 111146667888889999999999887 344
Q ss_pred HHHHHHHHhCC--CceEEEe
Q 006372 161 AVVAEILRKCE--GSVELVD 178 (648)
Q Consensus 161 aVV~~~L~~~~--g~veLvd 178 (648)
.-..+++.... +.++++.
T Consensus 466 ~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 466 NYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred HHHHHHHHHHHhCCCeEecc
Confidence 55555444311 2355543
No 154
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.09 E-value=0.088 Score=57.02 Aligned_cols=104 Identities=23% Similarity=0.280 Sum_probs=64.3
Q ss_pred CEEEEEEcCChHHHH-------HHHHHHHHhCCCc--EEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEE
Q 006372 27 NGMVIANDLDVQRCN-------LLIHQTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVL 97 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~-------~L~~~lkRlg~~n--v~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL 97 (648)
.+.|++-|+|..=++ -++.|++.+|+.. +-|...|.+.-| ......||.|+
T Consensus 230 Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~--------------------~rsn~~fDaIv 289 (421)
T KOG2671|consen 230 GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP--------------------LRSNLKFDAIV 289 (421)
T ss_pred cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc--------------------hhhcceeeEEE
Confidence 468889999976554 4778999999642 445556654422 22247899999
Q ss_pred EcCCCCCCCccccC----cc------ccc-ccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 98 CDVPCSGDGTLRKA----PD------IWR-KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 98 lDvPCSGdGtlrk~----p~------i~~-kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
||||-.=---.||- +. .-. .........|..+--.||.-+.+.|.-||+||.=
T Consensus 290 cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 290 CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 99994211111111 00 000 0011234456667778899999999999999863
No 155
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.06 E-value=0.37 Score=50.10 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
...|+.+|+|..=+..+.+..++.|.+ +.+..+|.+.- ++.. -..+||.++.|||=+-.|
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~----LP~~---------------~~~~fD~f~TDPPyT~~G 126 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP----LPEE---------------LRGKFDVFFTDPPYTPEG 126 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS-------TT---------------TSS-BSEEEE---SSHHH
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc----CCHH---------------HhcCCCEEEeCCCCCHHH
Confidence 458999999999999999999999998 88999987652 1110 126899999999944433
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcc--ccHHHHHHHHHhCC
Q 006372 107 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV--ENEAVVAEILRKCE 171 (648)
Q Consensus 107 tlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~--ENEaVV~~~L~~~~ 171 (648)
. .-.|.||++.||.-|..+|-..|..+. +-=.-|+++|.+.|
T Consensus 127 ~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 127 L-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp H-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS-
T ss_pred H-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCC
Confidence 2 345899999999767566766665541 12235777777665
No 156
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.00 E-value=0.098 Score=54.21 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=51.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCc
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 107 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGt 107 (648)
..|+|+|.+.+=++.-+.....-|.. +++.... + ........+||.|+|= =+
T Consensus 82 a~VtgiD~se~~I~~Ak~ha~e~gv~----i~y~~~~-----~-------------edl~~~~~~FDvV~cm------EV 133 (243)
T COG2227 82 ASVTGIDASEKPIEVAKLHALESGVN----IDYRQAT-----V-------------EDLASAGGQFDVVTCM------EV 133 (243)
T ss_pred CeeEEecCChHHHHHHHHhhhhcccc----ccchhhh-----H-------------HHHHhcCCCccEEEEh------hH
Confidence 68999999999888877666655543 2221111 0 0001112689999982 11
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 108 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 108 lrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
+-+-|+. ..+++.+.+|+||||.++.||=-
T Consensus 134 lEHv~dp----------------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 134 LEHVPDP----------------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHccCCH----------------HHHHHHHHHHcCCCcEEEEeccc
Confidence 2222221 23799999999999999999854
No 157
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=93.94 E-value=0.39 Score=54.97 Aligned_cols=162 Identities=11% Similarity=0.004 Sum_probs=86.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
-|||.|+..++++..+...... ..-.-.+++.|+|+..+..++.++..++...+.+.+.|.........
T Consensus 38 P~cGsG~fl~~~~~~~~~~~~~-~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~---------- 106 (524)
T TIGR02987 38 PCCGDGRLIAALLKKNEEINYF-KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI---------- 106 (524)
T ss_pred CCCCccHHHHHHHHHHHhcCCc-ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc----------
Confidence 3899999999999887531100 00134689999999999999999887763334455554332111000
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccC------------ccccc---ccCc-----ch----hhhhHHHHHHH-HH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKA------------PDIWR---KWNV-----GL----GNGLHSLQVQI-AM 135 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~------------p~i~~---kws~-----~~----~~~L~~lQ~~I-L~ 135 (648)
......||.|+.-||=......++. ++.+. .|.. .. ..+...+...+ +.
T Consensus 107 ------~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~ 180 (524)
T TIGR02987 107 ------ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEE 180 (524)
T ss_pred ------ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHH
Confidence 0012479999999995443321110 00000 0000 00 00112233333 46
Q ss_pred HHhhccccCcEEEEeccc-CCccccHHHHHHHHHhCCCceEEEeC
Q 006372 136 RGISLLKVGGRIVYSTCS-MNPVENEAVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 136 ~Al~lLk~GG~LVYSTCS-l~p~ENEaVV~~~L~~~~g~veLvd~ 179 (648)
+|+++|++||++.+-+=+ +........+...|-+...-..+++.
T Consensus 181 ~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f 225 (524)
T TIGR02987 181 ISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYF 225 (524)
T ss_pred HHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEEC
Confidence 899999999999886543 22223344454444333222334444
No 158
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.84 E-value=0.11 Score=57.43 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc--EEEeecccccCCCcccCCCCCCCCCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n--v~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
||.|=-+.-.+.=+. +...|++||+|+..+++++.|++..+... +.+.+.||..+-.
T Consensus 58 aasGvR~iRy~~E~~--------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~------------- 116 (377)
T PF02005_consen 58 AASGVRGIRYAKELA--------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY------------- 116 (377)
T ss_dssp -TTSHHHHHHHHH-S--------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-------------
T ss_pred ccccHHHHHHHHHcC--------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-------------
Confidence 556666554443221 13589999999999999999999999875 8889999876421
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
.....||.|=+||= |+ | .-.|+.|++.++.|| |+|-|||
T Consensus 117 -------~~~~~fD~IDlDPf----GS------------p----------~pfldsA~~~v~~gG-ll~vTaT 155 (377)
T PF02005_consen 117 -------SRQERFDVIDLDPF----GS------------P----------APFLDSALQAVKDGG-LLCVTAT 155 (377)
T ss_dssp -------HSTT-EEEEEE--S----S------------------------HHHHHHHHHHEEEEE-EEEEEE-
T ss_pred -------hccccCCEEEeCCC----CC------------c----------cHhHHHHHHHhhcCC-EEEEecc
Confidence 11367999999985 21 1 234899999999965 5677887
No 159
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.78 E-value=0.35 Score=53.43 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=63.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
++|+.|+-+.+++... ...|+++|.++..+...+++++.+ ++.+...|...+
T Consensus 174 IGcG~G~~a~~la~~~----------g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l--------------- 225 (383)
T PRK11705 174 IGCGWGGLARYAAEHY----------GVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL--------------- 225 (383)
T ss_pred eCCCccHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc---------------
Confidence 3678999998887652 248999999999998888776432 244444443221
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
...||.|++= +++-.-+ . .-...++..+.++|||||+++.++-+.
T Consensus 226 ---------~~~fD~Ivs~------~~~ehvg-------~-------~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 226 ---------NGQFDRIVSV------GMFEHVG-------P-------KNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---------CCCCCEEEEe------CchhhCC-------h-------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 1469999851 1211000 0 112356888999999999999886543
No 160
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.73 E-value=0.42 Score=50.92 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=70.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-CCcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+.|+.|.||..|++.+.. ...++++|+|..=+....+++.+-. .-++..++.|........
T Consensus 70 LGcGtG~~t~~Ll~~l~~--------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~---------- 131 (301)
T TIGR03438 70 LGSGSSRKTRLLLDALRQ--------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP---------- 131 (301)
T ss_pred cCCCcchhHHHHHHhhcc--------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh----------
Confidence 468999999999988642 2579999999988877777765422 123445666654421100
Q ss_pred cCcccccccccccc---cEEE--EcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 80 KGIESESNMGQLLF---DRVL--CDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 80 ~~~~~~~~~~~~~F---DrIL--lDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
..+ ++++ ++.+ -|.+ . ..-+.++|.+..+.|+|||+++...=+.
T Consensus 132 -----------~~~~~~~~~~~~~gs~---~~~~----------~-------~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 132 -----------PEPAAGRRLGFFPGST---IGNF----------T-------PEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred -----------cccccCCeEEEEeccc---ccCC----------C-------HHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 111 3333 3222 2211 1 1224688999999999999998865444
Q ss_pred CccccHHHHHHH
Q 006372 155 NPVENEAVVAEI 166 (648)
Q Consensus 155 ~p~ENEaVV~~~ 166 (648)
-+.+++..+
T Consensus 181 ---~~~~~~~~a 189 (301)
T TIGR03438 181 ---KDPAVLEAA 189 (301)
T ss_pred ---CCHHHHHHh
Confidence 455666444
No 161
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.66 E-value=0.13 Score=53.53 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=67.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhC----CCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccc-cccEEEEcCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL-LFDRVLCDVP 101 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~FDrILlDvP 101 (648)
-..|+++|+|+.=+++.++.+.... -+++.++..||..|..-. .. +||.|++|++
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--------------------~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--------------------QEEKYDVIIVDLT 159 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS--------------------SST-EEEEEEESS
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc--------------------cCCcccEEEEeCC
Confidence 3589999999998888887766533 468999999998874211 13 7999999997
Q ss_pred CCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHh
Q 006372 102 CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 169 (648)
Q Consensus 102 CSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~ 169 (648)
= ..|.. .. -.-.+.++.+.+.|++||.+|.-.-| |..++..+..+++.
T Consensus 160 d-p~~~~-------------~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~--~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 160 D-PDGPA-------------PN----LFTREFYQLCKRRLKPDGVLVLQAGS--PFLHPELFKSILKT 207 (246)
T ss_dssp S-TTSCG-------------GG----GSSHHHHHHHHHHEEEEEEEEEEEEE--TTTTHHHHHHHHHH
T ss_pred C-CCCCc-------------cc----ccCHHHHHHHHhhcCCCcEEEEEccC--cccchHHHHHHHHH
Confidence 2 11210 00 12356678888899999999976633 33455666665543
No 162
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.55 E-value=0.53 Score=47.91 Aligned_cols=126 Identities=23% Similarity=0.311 Sum_probs=84.3
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
-||.|.-.+|++.... .|.|+|++.+++=..-|...+++ .+|+..+-.||.. |.-+.
T Consensus 84 GAasGTTvSHVSDIv~---------~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~-P~~Y~----------- 140 (231)
T COG1889 84 GAASGTTVSHVSDIVG---------EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK-PEKYR----------- 140 (231)
T ss_pred eccCCCcHhHHHhccC---------CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC-cHHhh-----------
Confidence 4889999999998853 69999999999888777776654 4788888888865 32111
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHH-HHHhhccccCcEEE--EecccCCccc
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIV--YSTCSMNPVE 158 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL-~~Al~lLk~GG~LV--YSTCSl~p~E 158 (648)
.--...|.|..|+. ..-|.+|+ .+|-.+||+||.++ -=+-|+..-+
T Consensus 141 ------~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~ 189 (231)
T COG1889 141 ------HLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA 189 (231)
T ss_pred ------hhcccccEEEEecC-------------------------CchHHHHHHHHHHHhcccCCeEEEEEEeecccccC
Confidence 01256899999986 22355555 56788999999444 4456665544
Q ss_pred c-HHHHHHHHHhC-CCceEEEeCCC
Q 006372 159 N-EAVVAEILRKC-EGSVELVDVSN 181 (648)
Q Consensus 159 N-EaVV~~~L~~~-~g~veLvd~s~ 181 (648)
. ++|-..-+++. .+.|++++.-.
T Consensus 190 dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 190 DPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred CHHHHHHHHHHHHHhcCceeeEEec
Confidence 4 44444344432 24467666543
No 163
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=92.80 E-value=0.8 Score=48.39 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=65.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
|+-||-+.++++.- ...|+++.+|..-....+.++++.|.. .+.|...|...++
T Consensus 71 cGwG~~~~~~a~~~----------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--------------- 125 (273)
T PF02353_consen 71 CGWGGLAIYAAERY----------GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--------------- 125 (273)
T ss_dssp -TTSHHHHHHHHHH------------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------------
T ss_pred CCccHHHHHHHHHc----------CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---------------
Confidence 56788888888763 248999999999999999999999986 4777777654432
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
.+||+|+. -|++-.- .+. --...+.++.++|||||+++.-+++..
T Consensus 126 ---------~~fD~IvS------i~~~Ehv-------g~~-------~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 ---------GKFDRIVS------IEMFEHV-------GRK-------NYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp ----------S-SEEEE------ESEGGGT-------CGG-------GHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred ---------CCCCEEEE------Eechhhc-------Chh-------HHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 37999874 1222111 000 113458889999999999987766653
No 164
>PRK10742 putative methyltransferase; Provisional
Probab=92.79 E-value=0.23 Score=51.84 Aligned_cols=69 Identities=16% Similarity=-0.027 Sum_probs=52.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHh------CC---CcEEEeecccccCCCcccCC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------CT---ANLIVTNHEAQHFPGCRANK 72 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRl------g~---~nv~vtn~Da~~~p~~~~~~ 72 (648)
+|+.|.=+.-++.+ .+.|+++|.++.=+.+|+++++|+ +. .++.+.+.|+..|...
T Consensus 96 TAGlG~Da~~las~-----------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---- 160 (250)
T PRK10742 96 TAGLGRDAFVLASV-----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---- 160 (250)
T ss_pred CCCccHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh----
Confidence 56667666666543 346999999999999999999996 32 5688888888776321
Q ss_pred CCCCCCCcCcccccccccccccEEEEcCC
Q 006372 73 NFSSASDKGIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~FDrILlDvP 101 (648)
....||.|.+|||
T Consensus 161 ----------------~~~~fDVVYlDPM 173 (250)
T PRK10742 161 ----------------ITPRPQVVYLDPM 173 (250)
T ss_pred ----------------CCCCCcEEEECCC
Confidence 0135999999999
No 165
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.24 E-value=0.88 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhccccCcEEEEec
Q 006372 128 SLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 128 ~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
..|.++|.+..+.|+|||.|+-..
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 457889999999999999999764
No 166
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.01 E-value=0.52 Score=50.49 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=65.1
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 104 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSG 104 (648)
+.+.|+|+|+|+.-....++|++..|... +.+. ..... ...+||.|++--
T Consensus 183 GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-----------------------~~~~~dlvvANI---- 233 (295)
T PF06325_consen 183 GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-----------------------VEGKFDLVVANI---- 233 (295)
T ss_dssp TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-----------------------CCS-EEEEEEES----
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-----------------------ccccCCEEEECC----
Confidence 35689999999999999999999999865 3231 11111 016799999731
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCceEEEeC
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~veLvd~ 179 (648)
+...-..|+....++|+|||+|+-|= +-.++.+.|++ ++++ + ++++..
T Consensus 234 ---------------------~~~vL~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~~-a~~~-g--~~~~~~ 281 (295)
T PF06325_consen 234 ---------------------LADVLLELAPDIASLLKPGGYLILSG--ILEEQEDEVIE-AYKQ-G--FELVEE 281 (295)
T ss_dssp ----------------------HHHHHHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHHH-HHHT-T--EEEEEE
T ss_pred ---------------------CHHHHHHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHHH-HHHC-C--CEEEEE
Confidence 34445677778888999999999874 44455555554 5564 3 666553
No 167
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=91.80 E-value=1 Score=45.18 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeeccccc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 64 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~ 64 (648)
++|+.|.-+..++.. ...|+++|+++.-+...+.++...+. .++.+...|+..
T Consensus 62 iGcG~G~~~~~la~~-----------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 62 AGCGTGLLSIELAKR-----------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred EeCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 367888888877653 24799999999999999888876665 356666555433
No 168
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=91.70 E-value=0.00059 Score=72.11 Aligned_cols=66 Identities=21% Similarity=0.195 Sum_probs=48.6
Q ss_pred EEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHH
Q 006372 96 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEA 161 (648)
Q Consensus 96 ILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEa 161 (648)
||++.+|++.+++|.|+..|..|........+.+|.+.+..+..++..++...|++|++.+.++..
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~ 66 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGL 66 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTS
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCc
Confidence 567899999999999999888877666666666776666666666667788889999997776643
No 169
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.52 E-value=0.18 Score=44.69 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
+-|.-|..|++.+... ..+.++++|..+. .+.....+++.+. .++.++..+...+..
T Consensus 6 ~~G~st~~l~~~~~~~------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~--------------- 63 (106)
T PF13578_consen 6 YSGYSTLWLASALRDN------GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP--------------- 63 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHH---------------
T ss_pred cccccccccccccccc------ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH---------------
Confidence 4677788888887642 1258999999885 2233334444554 368888777643210
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
......||.|++|++=+. ..-..-|..++++|+|||.||.=
T Consensus 64 ----~~~~~~~dli~iDg~H~~-----------------------~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 64 ----SLPDGPIDLIFIDGDHSY-----------------------EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHH--EEEEEEES---H-----------------------HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----HcCCCCEEEEEECCCCCH-----------------------HHHHHHHHHHHHHcCCCeEEEEe
Confidence 011257999999986111 22344588899999999999863
No 170
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.16 E-value=0.98 Score=50.85 Aligned_cols=98 Identities=19% Similarity=0.084 Sum_probs=63.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-CCcEEEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
++|+.|.-|..+++. .+.|+++|.++.-+...+ ++.+ .+++.+.+.|+.... ..
T Consensus 44 lGcG~G~~~~~la~~-----------~~~v~giD~s~~~l~~a~---~~~~~~~~i~~~~~d~~~~~-~~---------- 98 (475)
T PLN02336 44 LGAGIGRFTGELAKK-----------AGQVIALDFIESVIKKNE---SINGHYKNVKFMCADVTSPD-LN---------- 98 (475)
T ss_pred eCCCcCHHHHHHHhh-----------CCEEEEEeCCHHHHHHHH---HHhccCCceEEEEecccccc-cC----------
Confidence 368889888888764 247999999997665432 2222 357777777764321 00
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
.....||.|++..++. .++. ....++|.+..+.|||||+|+..-
T Consensus 99 --------~~~~~fD~I~~~~~l~-------------~l~~-------~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 99 --------ISDGSVDLIFSNWLLM-------------YLSD-------KEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred --------CCCCCEEEEehhhhHH-------------hCCH-------HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 0125699999865411 0010 112578899999999999998763
No 171
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=91.14 E-value=0.47 Score=47.39 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
|...++-+|...||+..|++-...||.+|+.+.+..+.. +. ....||.|..=|=++
T Consensus 71 p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~---------------------~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 71 PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE---------------------YRESFDVVTARAVAP-- 126 (184)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT---------------------TTT-EEEEEEESSSS--
T ss_pred CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc---------------------cCCCccEEEeehhcC--
Confidence 567899999999999999999999999999999987765 11 126799999865310
Q ss_pred CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 106 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 106 Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
+ -.++.-+..++++||+++.--=.
T Consensus 127 --------------------l----~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 127 --------------------L----DKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp --------------------H----HHHHHHHGGGEEEEEEEEEEESS
T ss_pred --------------------H----HHHHHHHHHhcCCCCEEEEEcCC
Confidence 0 24577789999999987776443
No 172
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.96 E-value=6.1 Score=38.80 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=54.8
Q ss_pred cccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHh
Q 006372 90 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 169 (648)
Q Consensus 90 ~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~ 169 (648)
...||||+--=|+.|.|. +....++.....|=...+..|.++|+++|.|.-+-|.-.|- +.=.|..+-++
T Consensus 73 ~~~FDrIiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~lA~~ 142 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEELAAE 142 (166)
T ss_pred CCcCCEEEEeCCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHHHHh
Confidence 367999999999999554 22233444455666788999999999999999999998884 33344444444
Q ss_pred CCCceEEEeC
Q 006372 170 CEGSVELVDV 179 (648)
Q Consensus 170 ~~g~veLvd~ 179 (648)
.+ +.|+..
T Consensus 143 ~g--l~l~~~ 150 (166)
T PF10354_consen 143 AG--LVLVRK 150 (166)
T ss_pred cC--CEEEEE
Confidence 33 555544
No 173
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=90.53 E-value=0.94 Score=47.32 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHH
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 49 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkR 49 (648)
|-.|--|.+|+.... .-.|+++|+|..+++..+.++..
T Consensus 67 CNsG~lt~~iak~F~---------~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 67 CNSGFLTLSIAKDFG---------PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CCcchhHHHHHHhhc---------cceeeEeeccHHHHHHHHHhccc
Confidence 446778899988764 35799999999999888877654
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=90.05 E-value=0.83 Score=48.81 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=52.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-CCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
.+++|.-|..|++. .+.|+|+|+|+.=+..+++++...+ ..++.+++.|+..++
T Consensus 44 G~G~G~LT~~Ll~~-----------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------------- 98 (294)
T PTZ00338 44 GPGTGNLTEKLLQL-----------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------------- 98 (294)
T ss_pred cCchHHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--------------
Confidence 47788888887664 2479999999999999999988776 578999999986542
Q ss_pred CcccccccccccccEEEEcCC
Q 006372 81 GIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvP 101 (648)
...||+|+.+.|
T Consensus 99 ---------~~~~d~VvaNlP 110 (294)
T PTZ00338 99 ---------FPYFDVCVANVP 110 (294)
T ss_pred ---------ccccCEEEecCC
Confidence 135799999988
No 175
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=89.89 E-value=1.7 Score=45.30 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 66 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p 66 (648)
.|+.|.-|.+++..+... ....|+++|+++.-+..... +. +++.+...|+..+|
T Consensus 93 GcG~G~~~~~l~~~~~~~------~~~~v~giD~s~~~l~~A~~---~~--~~~~~~~~d~~~lp 146 (272)
T PRK11088 93 GCGEGYYTHALADALPEI------TTMQLFGLDISKVAIKYAAK---RY--PQVTFCVASSHRLP 146 (272)
T ss_pred CCcCCHHHHHHHHhcccc------cCCeEEEECCCHHHHHHHHH---hC--CCCeEEEeecccCC
Confidence 478898888887765321 12379999999876655432 32 45666666766654
No 176
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=89.76 E-value=1.7 Score=43.82 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=59.7
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEE----EcCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVL----CDVP 101 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL----lDvP 101 (648)
.+.++.+|.+++...+.++..+|-+.+| |..-..|-.. | .....+||.|| +||-
T Consensus 91 ~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~--------------------~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-P--------------------DFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-C--------------------cccccceeEEeecCceeee
Confidence 4569999999999999888889999988 5554444322 1 11125677776 3331
Q ss_pred -CCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccc
Q 006372 102 -CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 158 (648)
Q Consensus 102 -CSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~E 158 (648)
-|+++.-.|. .--+...-++|+|||++|.+.|-+...|
T Consensus 150 sLs~d~~~~r~-------------------~~Y~d~v~~ll~~~gifvItSCN~T~dE 188 (227)
T KOG1271|consen 150 SLSPDGPVGRL-------------------VVYLDSVEKLLSPGGIFVITSCNFTKDE 188 (227)
T ss_pred ecCCCCcccce-------------------eeehhhHhhccCCCcEEEEEecCccHHH
Confidence 2333322111 1125566778999999999999886543
No 177
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=89.29 E-value=1.4 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.6
Q ss_pred HHHHHHHhhccccCcEEEEecccC
Q 006372 131 VQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 131 ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
.+.+.+..++|||||++++.|=+.
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEc
Confidence 446888899999999988877665
No 178
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=88.30 E-value=2 Score=43.38 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=60.6
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
-|+.|--+..||+. .=.|+|+|.+..-++.|.+..++-+.+ +.+...|-..+.
T Consensus 38 gcG~GRNalyLA~~-----------G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~--------------- 90 (192)
T PF03848_consen 38 GCGEGRNALYLASQ-----------GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD--------------- 90 (192)
T ss_dssp S-TTSHHHHHHHHT-----------T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS---------------
T ss_pred CCCCcHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc---------------
Confidence 35777888888774 237999999999999998888887776 666666643321
Q ss_pred cccccccccccccEEEEcCCCCCCCccc-cCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlr-k~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
. ...||.|+..+- +. -+++ ..-+|+.+--+.++|||++++-|
T Consensus 91 ------~-~~~yD~I~st~v------~~fL~~~---------------~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 ------F-PEEYDFIVSTVV------FMFLQRE---------------LRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp --------TTTEEEEEEESS------GGGS-GG---------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------c-cCCcCEEEEEEE------eccCCHH---------------HHHHHHHHHHhhcCCcEEEEEEE
Confidence 0 146899986432 11 0111 11235566667899999999954
No 179
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=88.14 E-value=0.96 Score=49.47 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=42.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+.|||||.|-+|++. .+.|+|+|..+ |...+ +..++|.....|+..+..
T Consensus 218 LGAsPGGWT~~L~~r-----------G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p------------- 266 (357)
T PRK11760 218 LGAAPGGWTYQLVRR-----------GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRP------------- 266 (357)
T ss_pred eCCCCcHHHHHHHHc-----------CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCC-------------
Confidence 469999999999774 35999999543 22222 345667666666544311
Q ss_pred CcccccccccccccEEEEcCCCC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCS 103 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCS 103 (648)
....+|.|+||+-|.
T Consensus 267 --------~~~~vDwvVcDmve~ 281 (357)
T PRK11760 267 --------PRKNVDWLVCDMVEK 281 (357)
T ss_pred --------CCCCCCEEEEecccC
Confidence 025689999999763
No 180
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.71 E-value=0.81 Score=48.17 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=51.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+.||-+.-+.++ +--.|+|+|.++..++.+++|.. +. +.+.|...+...
T Consensus 6 LFsG~Gg~~~gl~~~----------G~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~------------ 57 (275)
T cd00315 6 LFAGIGGFRLGLEKA----------GFEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEK------------ 57 (275)
T ss_pred EccCcchHHHHHHHc----------CCEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchh------------
Confidence 589999998776442 13478999999999999988753 21 344454443210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKA 111 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~ 111 (648)
.. ...+|.|+.++||.+--...++
T Consensus 58 ------~~-~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 58 ------DF-IPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred ------hc-CCCCCEEEeCCCChhhhHHhhc
Confidence 00 2468999999999887766543
No 181
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=87.41 E-value=0.88 Score=48.97 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=56.1
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
.+-||.|..|++.+. .|.|+|+|.|+.-+...++.++.++ .++.+++.+...++...-
T Consensus 29 lG~GGHS~~iL~~l~---------~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~------------ 86 (305)
T TIGR00006 29 LGFGGHSKAILEQLG---------TGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLD------------ 86 (305)
T ss_pred CCChHHHHHHHHhCC---------CCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHH------------
Confidence 467999999988652 4899999999999988888877653 467777777666543210
Q ss_pred ccccccccccccEEEEcCCCCCC
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGd 105 (648)
......||.||+|--+|+.
T Consensus 87 ----~~~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 87 ----ELLVTKIDGILVDLGVSSP 105 (305)
T ss_pred ----hcCCCcccEEEEeccCCHh
Confidence 0012469999999988874
No 182
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=86.67 E-value=2.6 Score=40.55 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEcCChHHHHHHHHHHHHhC---CCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCcc
Q 006372 32 ANDLDVQRCNLLIHQTKRMC---TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 108 (648)
Q Consensus 32 AnD~d~kR~~~L~~~lkRlg---~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGtl 108 (648)
++|.+..=++..+.+.+..+ ..++.+...|+..+|. ....||.|++- .+ +
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---------------------~~~~fD~v~~~-----~~-l 54 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---------------------DDCEFDAVTMG-----YG-L 54 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC---------------------CCCCeeEEEec-----ch-h
Confidence 67888877766655443222 3468888888877652 11469999962 22 1
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 109 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 109 rk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
+ .|. -..+.|....+.|||||+++-...+.
T Consensus 55 ~-------~~~---------d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 55 R-------NVV---------DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred h-------cCC---------CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 1 110 12467899999999999998766553
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=86.51 E-value=1.7 Score=45.20 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=50.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+++++|.-|..|++. .+.|+|+|+|..-+..++++++. .+++.+++.|+..++.
T Consensus 36 IG~G~G~lt~~L~~~-----------~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~------------- 89 (258)
T PRK14896 36 IGPGKGALTDELAKR-----------AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL------------- 89 (258)
T ss_pred EeCccCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-------------
Confidence 368899999988765 24799999999999888877654 4689999999866431
Q ss_pred CcccccccccccccEEEEcCC
Q 006372 81 GIESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvP 101 (648)
..||.|+.-.|
T Consensus 90 ----------~~~d~Vv~NlP 100 (258)
T PRK14896 90 ----------PEFNKVVSNLP 100 (258)
T ss_pred ----------hhceEEEEcCC
Confidence 23789998887
No 184
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=86.18 E-value=4.3 Score=44.04 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=39.6
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHh-CCC-cEEEee-cccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTN-HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 102 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRl-g~~-nv~vtn-~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPC 102 (648)
...++|.|+|+.-+...+.++++. +.. .+.+.. .+...+.... ......||.|+|-||=
T Consensus 138 ~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i-----------------~~~~~~fDlivcNPPf 199 (321)
T PRK11727 138 GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGI-----------------IHKNERFDATLCNPPF 199 (321)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcc-----------------cccCCceEEEEeCCCC
Confidence 357999999999999999999998 665 455532 2322211100 0012579999999993
No 185
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=86.12 E-value=6.6 Score=46.96 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=59.5
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCC
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
..|+++|+|+.-+...++|+++.|... +.+.+.|+..++... ....||.|+++||= |
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-------------------~~~~~d~IvtNPPY---g 314 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-------------------PKGPTGLVISNPPY---G 314 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-------------------ccCCCCEEEECCCC---c
Confidence 479999999999999999999999864 778888877653210 01459999999991 1
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 107 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 107 tlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
.++ .....+..+-..+. ..++-..+|++++--|
T Consensus 315 ---------~r~--~~~~~l~~lY~~lg-~~lk~~~~g~~~~llt 347 (702)
T PRK11783 315 ---------ERL--GEEPALIALYSQLG-RRLKQQFGGWNAALFS 347 (702)
T ss_pred ---------Ccc--CchHHHHHHHHHHH-HHHHHhCCCCeEEEEe
Confidence 111 11123444544433 4455555888775444
No 186
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=85.77 E-value=3.3 Score=45.66 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCC-CEEEEEEcCChHHHHHHHHHH--HHhC-----CCcEEEeecccccCCCcccCCCCCCC
Q 006372 6 GSKTFQLLEIIHQSTNPGALP-NGMVIANDLDVQRCNLLIHQT--KRMC-----TANLIVTNHEAQHFPGCRANKNFSSA 77 (648)
Q Consensus 6 GgKT~qlae~l~~~~~~~~~~-~G~ViAnD~d~kR~~~L~~~l--kRlg-----~~nv~vtn~Da~~~p~~~~~~~~~~~ 77 (648)
||--..+-|++.. | -+.|+-+|.|++=.+.-.|+. +.++ -|++.|++.||.+|...
T Consensus 298 GGDGLAlRellky-------P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--------- 361 (508)
T COG4262 298 GGDGLALRELLKY-------PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--------- 361 (508)
T ss_pred CCchHHHHHHHhC-------CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh---------
Confidence 4555666677664 4 689999999999988888654 3333 26799999999887421
Q ss_pred CCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 78 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 78 ~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
...+||.|++|-| +|+ ++..+.-.+.--..++. +.|+++|++|--
T Consensus 362 -----------a~~~fD~vIVDl~---------DP~-----tps~~rlYS~eFY~ll~---~~l~e~Gl~VvQ 406 (508)
T COG4262 362 -----------AADMFDVVIVDLP---------DPS-----TPSIGRLYSVEFYRLLS---RHLAETGLMVVQ 406 (508)
T ss_pred -----------hcccccEEEEeCC---------CCC-----CcchhhhhhHHHHHHHH---HhcCcCceEEEe
Confidence 1258999999988 443 22222222222333444 467889987743
No 187
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=84.92 E-value=9.1 Score=36.82 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=61.6
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCc
Q 006372 29 MVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 107 (648)
Q Consensus 29 ~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGt 107 (648)
.|+|+|+...-+..-+++++..+.. ++.+++..-..+... + ....+|.|+. ..|-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-i------------------~~~~v~~~iF-----NLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-I------------------PEGPVDAAIF-----NLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---------------------S--EEEEEE-----EESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-C------------------ccCCcCEEEE-----ECCc
Confidence 4899999999999999999998875 477665544443221 0 0024666665 2344
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCc---cccHHHHHHHHHh
Q 006372 108 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP---VENEAVVAEILRK 169 (648)
Q Consensus 108 lrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p---~ENEaVV~~~L~~ 169 (648)
+... ...+......=+.-|..|+++|++||+|+-..=.=++ +|-++|.+ +++.
T Consensus 57 LPgg--------Dk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~-~~~~ 112 (140)
T PF06962_consen 57 LPGG--------DKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEE-FLAS 112 (140)
T ss_dssp -CTS---------TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHH-HHHT
T ss_pred CCCC--------CCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHH-HHHh
Confidence 3211 1112223344456689999999999988765544455 45555554 4554
No 188
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=84.92 E-value=1.6 Score=44.73 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCccccccccccc-ccEEEEcCCCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL-FDRVLCDVPCSG 104 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-FDrILlDvPCSG 104 (648)
|...|+-+|...||+..|+.-.+.||.+|+.+.+..+..|... .. ||.|.+=|=++-
T Consensus 90 p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----------------------~~~~D~vtsRAva~L 147 (215)
T COG0357 90 PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----------------------KKQYDVVTSRAVASL 147 (215)
T ss_pred cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----------------------cccCcEEEeehccch
Confidence 4667999999999999999999999999999999988776320 12 899988664322
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEE
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 148 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LV 148 (648)
. .++.=+..++|+||.+|
T Consensus 148 ~--------------------------~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 148 N--------------------------VLLELCLPLLKVGGGFL 165 (215)
T ss_pred H--------------------------HHHHHHHHhcccCCcch
Confidence 1 23556789999988765
No 189
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=84.90 E-value=2 Score=39.85 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHHHhhccccCcEEEEecccC
Q 006372 131 VQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 131 ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
..+|.+..++|||||+++-++=..
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 467899999999999999988544
No 190
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=84.04 E-value=6.5 Score=39.28 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 61 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~D 61 (648)
+|++|.-+..++.. ...|+++|.++.-+...+.++...+. .++.+...|
T Consensus 71 GcG~G~~~~~l~~~-----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 71 GCGVGSLSIPLARR-----------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred eCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 67888888777653 13599999999999999888877765 355555555
No 191
>KOG2730 consensus Methylase [General function prediction only]
Probab=83.20 E-value=1.2 Score=46.06 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCcC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
++-||-|+|-+.. --.|||+|+|+-|+.+-+||++-+|.++ |..+++|....-.
T Consensus 103 ~g~gGntiqfa~~-----------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~-------------- 157 (263)
T KOG2730|consen 103 CGVGGNTIQFALQ-----------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS-------------- 157 (263)
T ss_pred hcCCchHHHHHHh-----------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH--------------
Confidence 3456666665432 2378999999999999999999999976 6666666432100
Q ss_pred cccccccccccccEEEEcCCCCCCCccccC
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKA 111 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~ 111 (648)
........+|.|++=+|=+|.|-++..
T Consensus 158 ---~lq~~K~~~~~vf~sppwggp~y~~~~ 184 (263)
T KOG2730|consen 158 ---KLKADKIKYDCVFLSPPWGGPSYLRAD 184 (263)
T ss_pred ---HHhhhhheeeeeecCCCCCCcchhhhh
Confidence 001112336688888898888887654
No 192
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=82.21 E-value=1.6 Score=49.59 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCcEE-EeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~-vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
-+.|+|||.+..-+...+.|++..++..++ ....||... .+ ........||.|=+||=
T Consensus 134 v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~l---M~--------------~~~~~~~~FDvIDLDPy---- 192 (525)
T KOG1253|consen 134 VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVL---MY--------------EHPMVAKFFDVIDLDPY---- 192 (525)
T ss_pred hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHH---HH--------------hccccccccceEecCCC----
Confidence 468999999999999999999988876644 344444321 00 01111257999999985
Q ss_pred CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 106 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 106 Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
|+ + -..|+.|++.++-||. ++.|||
T Consensus 193 Gs------------~----------s~FLDsAvqav~~gGL-L~vT~T 217 (525)
T KOG1253|consen 193 GS------------P----------SPFLDSAVQAVRDGGL-LCVTCT 217 (525)
T ss_pred CC------------c----------cHHHHHHHHHhhcCCE-EEEEec
Confidence 22 1 1248999999999775 678888
No 193
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=81.76 E-value=2.7 Score=39.47 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=41.9
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 170 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~ 170 (648)
..||.|++|+- .-++||++|. ..++.+..+++++||+++--||+ ..|...|...
T Consensus 49 ~~~Da~ylDgF-----sP~~nPelWs--------------~e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-----SPAKNPELWS--------------EELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGGSS--------------HHHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-----CCcCCcccCC--------------HHHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 57999999963 2368999875 35788889999999988877775 4699999998
Q ss_pred CCc
Q 006372 171 EGS 173 (648)
Q Consensus 171 ~g~ 173 (648)
|-.
T Consensus 103 GF~ 105 (124)
T PF05430_consen 103 GFE 105 (124)
T ss_dssp TEE
T ss_pred CCE
Confidence 733
No 194
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=81.64 E-value=3.5 Score=42.64 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
-|+||.-|.+|++.- |...|+++|.|+. ||.....|+ +++.....|...+-
T Consensus 38 GCGpGnsTelL~~Rw---------P~A~i~GiDsS~~---Mla~Aa~rl--p~~~f~~aDl~~w~--------------- 88 (257)
T COG4106 38 GCGPGNSTELLARRW---------PDAVITGIDSSPA---MLAKAAQRL--PDATFEEADLRTWK--------------- 88 (257)
T ss_pred CCCCCHHHHHHHHhC---------CCCeEeeccCCHH---HHHHHHHhC--CCCceecccHhhcC---------------
Confidence 479999999998873 5789999999975 555554454 55655666655541
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEE
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 149 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVY 149 (648)
....+|.|+.-+- ..|-|+.. ++|.|-+..|.|||.|--
T Consensus 89 -------p~~~~dllfaNAv--------------lqWlpdH~--------~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 89 -------PEQPTDLLFANAV--------------LQWLPDHP--------ELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred -------CCCccchhhhhhh--------------hhhccccH--------HHHHHHHHhhCCCceEEE
Confidence 1145677776553 25666553 567888999999998854
No 195
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=81.60 E-value=5.2 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.0
Q ss_pred HHHHHHHhhccccCcEEEEec
Q 006372 131 VQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 131 ~~IL~~Al~lLk~GG~LVYST 151 (648)
..+|...+++|||||+|+-||
T Consensus 175 ~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 175 QEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHHHHHHhCCCCceEeee
Confidence 467889999999999999998
No 196
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=81.11 E-value=3.8 Score=43.66 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=60.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhC----CCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 102 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPC 102 (648)
--.++++|+|++=+++.+.-+--.. -+++.+.-.|+..|-.. . ..+||.|++|.-
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-------------------~-~~~fDvIi~D~t- 158 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-------------------C-EEKFDVIIVDST- 158 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-------------------C-CCcCCEEEEcCC-
Confidence 4589999999987777776654443 36677888888776321 0 137999999964
Q ss_pred CCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 103 SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 103 SGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
++. ...+.+ ++......+-+.|+++|.+|.=+=|
T Consensus 159 --dp~-gp~~~L--------------ft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 159 --DPV-GPAEAL--------------FTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred --CCC-Cccccc--------------CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 331 222222 2345678888899999999987555
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=81.11 E-value=23 Score=38.17 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=82.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcE-EEeecccccCCCcccCCCCCCCCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL-IVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv-~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
+||++|-- +++.+..... . .-.|.-+|.++.-++.=++.++..|..++ .+++.||.+...+. .
T Consensus 142 IAaG~GRY---vlDal~~~~~---~-~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~--~------- 205 (311)
T PF12147_consen 142 IAAGHGRY---VLDALEKHPE---R-PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA--A------- 205 (311)
T ss_pred eccCCcHH---HHHHHHhCCC---C-CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh--c-------
Confidence 57778776 4454443211 1 24789999999999999999999999887 89999987643221 0
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCcccc
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 159 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~EN 159 (648)
-...++.+++ +|.+---|| .+ +=.+.|.....++.|||.|||+.=-.||. .
T Consensus 206 ---------l~p~P~l~iV------sGL~ElF~D-------n~------lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-l 256 (311)
T PF12147_consen 206 ---------LDPAPTLAIV------SGLYELFPD-------ND------LVRRSLAGLARALEPGGYLIYTGQPWHPQ-L 256 (311)
T ss_pred ---------cCCCCCEEEE------ecchhhCCc-------HH------HHHHHHHHHHHHhCCCcEEEEcCCCCCcc-h
Confidence 0134577776 343322222 11 11234556677889999999998888883 2
Q ss_pred HHHHHHHHHhCC
Q 006372 160 EAVVAEILRKCE 171 (648)
Q Consensus 160 EaVV~~~L~~~~ 171 (648)
+.|+.+|..|.
T Consensus 257 -e~IAr~LtsHr 267 (311)
T PF12147_consen 257 -EMIARVLTSHR 267 (311)
T ss_pred -HHHHHHHhccc
Confidence 56889998763
No 198
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=80.54 E-value=13 Score=38.06 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhccccCcEEEEecccC
Q 006372 129 LQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 129 lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
...+.+.+..++|+|||++++.|=.+
T Consensus 133 ~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 133 MRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 34566888899999999755544444
No 199
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=80.28 E-value=12 Score=40.01 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
|+=|+-+.++|+.- ...|++++.|..-+...+..++..|+. ++.|.-.|=..+.
T Consensus 81 CGWG~l~~~aA~~y----------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--------------- 135 (283)
T COG2230 81 CGWGGLAIYAAEEY----------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--------------- 135 (283)
T ss_pred CChhHHHHHHHHHc----------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---------------
Confidence 45677777776652 368999999999999999999999997 7888766543321
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
..||||.- -|++- ..... --...+.++.++|+|||+++--|=+-.
T Consensus 136 ---------e~fDrIvS------vgmfE-------hvg~~-------~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 136 ---------EPFDRIVS------VGMFE-------HVGKE-------NYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred ---------cccceeee------hhhHH-------HhCcc-------cHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 34999973 33321 11111 113468889999999999987765543
No 200
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=80.06 E-value=1.7 Score=45.36 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=69.5
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHH--HHHhCCCcEEEeecccccCCCcccCCCCCCCCC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TKRMCTANLIVTNHEAQHFPGCRANKNFSSASD 79 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~--lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~ 79 (648)
|-+-|-.+...++. +.-.|+.+++|+.=+.+-.-| ...+-..++.++..|+..+-.
T Consensus 142 C~GLGYtAi~a~~r----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~------------ 199 (287)
T COG2521 142 CTGLGYTAIEALER----------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK------------ 199 (287)
T ss_pred ccCccHHHHHHHHc----------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh------------
Confidence 66666665544442 234899999998765543222 122223467888888765311
Q ss_pred cCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC----C
Q 006372 80 KGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM----N 155 (648)
Q Consensus 80 ~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl----~ 155 (648)
......||.|+=||| +.+... .| .-.++-+.-++.||+||+|+--|-.- .
T Consensus 200 -------~~~D~sfDaIiHDPP---------------RfS~Ag--eL--YseefY~El~RiLkrgGrlFHYvG~Pg~ryr 253 (287)
T COG2521 200 -------DFDDESFDAIIHDPP---------------RFSLAG--EL--YSEEFYRELYRILKRGGRLFHYVGNPGKRYR 253 (287)
T ss_pred -------cCCccccceEeeCCC---------------ccchhh--hH--hHHHHHHHHHHHcCcCCcEEEEeCCCCcccc
Confidence 122367999999999 333222 11 22344556678999999998544321 1
Q ss_pred ccccHHHHHHHHHhCC
Q 006372 156 PVENEAVVAEILRKCE 171 (648)
Q Consensus 156 p~ENEaVV~~~L~~~~ 171 (648)
-..=..=|++-|++-|
T Consensus 254 G~d~~~gVa~RLr~vG 269 (287)
T COG2521 254 GLDLPKGVAERLRRVG 269 (287)
T ss_pred cCChhHHHHHHHHhcC
Confidence 1122344666666654
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=79.79 E-value=5.8 Score=39.51 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=67.6
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
+|.|-.|-.|++..+. .-.++|.|.+..=...|.+ ++ +.+.++|.||.+.... +
T Consensus 57 PGTGV~TkaIL~~gv~--------~~~L~~iE~~~dF~~~L~~---~~--p~~~ii~gda~~l~~~-l------------ 110 (194)
T COG3963 57 PGTGVITKAILSRGVR--------PESLTAIEYSPDFVCHLNQ---LY--PGVNIINGDAFDLRTT-L------------ 110 (194)
T ss_pred CCccHhHHHHHhcCCC--------ccceEEEEeCHHHHHHHHH---hC--CCccccccchhhHHHH-H------------
Confidence 4556667767665442 3578999999987776643 33 4455789998764311 1
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
+......||.|++-+| +..-| ...-.+||..++..|.+||.+|--|-+
T Consensus 111 ---~e~~gq~~D~viS~lP------ll~~P--------------~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 ---GEHKGQFFDSVISGLP------LLNFP--------------MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ---hhcCCCeeeeEEeccc------cccCc--------------HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 1122367999999988 11111 112367899999999999999977776
No 202
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.53 E-value=3.8 Score=45.14 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=65.7
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCcc
Q 006372 29 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 108 (648)
Q Consensus 29 ~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGtl 108 (648)
.|++||++++-+++++.|++++...+..++|.||..+-.- ....||.|=+||= |+
T Consensus 78 ~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--------------------~~~~fd~IDiDPF----GS- 132 (380)
T COG1867 78 KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--------------------LHRAFDVIDIDPF----GS- 132 (380)
T ss_pred EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--------------------cCCCccEEecCCC----CC-
Confidence 7999999999999999999988666777888887654210 0157999999985 21
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc-CCccccHHHHHHHHHhCC
Q 006372 109 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MNPVENEAVVAEILRKCE 171 (648)
Q Consensus 109 rk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS-l~p~ENEaVV~~~L~~~~ 171 (648)
| .-.|+.|++.++.||.|-- ||| ..|...- .-...+++++
T Consensus 133 -----------P----------aPFlDaA~~s~~~~G~l~v-TATD~a~L~G~-~p~~c~rkY~ 173 (380)
T COG1867 133 -----------P----------APFLDAALRSVRRGGLLCV-TATDTAPLCGS-YPRKCRRKYG 173 (380)
T ss_pred -----------C----------chHHHHHHHHhhcCCEEEE-EecccccccCC-ChHHHHHHhc
Confidence 1 1248899999999887765 444 4333332 3334444443
No 203
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=78.70 E-value=5.6 Score=35.90 Aligned_cols=90 Identities=27% Similarity=0.356 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccc
Q 006372 6 GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESE 85 (648)
Q Consensus 6 GgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~ 85 (648)
|.-+.|+|..+ + ..|++.|.+..|.+++ +++|...+ ++.....+.. .+ ..
T Consensus 3 G~~a~q~ak~~---------G-~~vi~~~~~~~k~~~~----~~~Ga~~~--~~~~~~~~~~-~i------------~~- 52 (130)
T PF00107_consen 3 GLMAIQLAKAM---------G-AKVIATDRSEEKLELA----KELGADHV--IDYSDDDFVE-QI------------RE- 52 (130)
T ss_dssp HHHHHHHHHHT---------T-SEEEEEESSHHHHHHH----HHTTESEE--EETTTSSHHH-HH------------HH-
T ss_pred HHHHHHHHHHc---------C-CEEEEEECCHHHHHHH----Hhhccccc--cccccccccc-cc------------cc-
Confidence 66778887764 2 6899999999998765 56885433 3322221100 00 00
Q ss_pred cccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 86 SNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 86 ~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
......+|.|+- |+|.+. .+..++++|++||++|-....-
T Consensus 53 -~~~~~~~d~vid---~~g~~~-------------------------~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 53 -LTGGRGVDVVID---CVGSGD-------------------------TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -HTTTSSEEEEEE---SSSSHH-------------------------HHHHHHHHEEEEEEEEEESSTS
T ss_pred -ccccccceEEEE---ecCcHH-------------------------HHHHHHHHhccCCEEEEEEccC
Confidence 000135787764 555332 3788999999999988665443
No 204
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=78.69 E-value=4 Score=42.82 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 66 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p 66 (648)
++||+|.-|..|++. .+.|+|+|+|+.-+..+++++. .+++.+.+.|+..++
T Consensus 49 iG~G~G~lt~~L~~~-----------~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 49 IGPGLGALTEPLLER-----------AAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVD 100 (272)
T ss_pred eCCCccHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCC
Confidence 478999999988775 1379999999998888876553 268899999987653
No 205
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.16 E-value=6.1 Score=43.27 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCccc
Q 006372 5 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIES 84 (648)
Q Consensus 5 PGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~ 84 (648)
-|.-+.|+|..|. ..|+|+|++..+++.. ++||...++..+ |......+
T Consensus 178 lGh~avQ~Aka~g----------a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~---------------- 226 (339)
T COG1064 178 LGHMAVQYAKAMG----------AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAV---------------- 226 (339)
T ss_pred HHHHHHHHHHHcC----------CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHh----------------
Confidence 4555666666542 5899999999988755 568876554433 33221110
Q ss_pred ccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 85 ESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 85 ~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
...||.||.=+| . .-+..++++|++||+||-.
T Consensus 227 -----~~~~d~ii~tv~----~-------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 227 -----KEIADAIIDTVG----P-------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -----HhhCcEEEECCC----h-------------------------hhHHHHHHHHhcCCEEEEE
Confidence 123999998665 1 1257788999999998754
No 206
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.12 E-value=16 Score=40.66 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=65.8
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCc
Q 006372 29 MVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 107 (648)
Q Consensus 29 ~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGt 107 (648)
.+++.|+|++-++.-+.|.++.|+.. |.....|++.+..- ...+|.|+++||= |..
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---------------------~~~~gvvI~NPPY-GeR- 312 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP---------------------LEEYGVVISNPPY-GER- 312 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---------------------CCcCCEEEeCCCc-chh-
Confidence 58899999999999999999999864 67777887776421 1468999999992 111
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 108 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 108 lrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
-..-.....|...+....-+.++-.++.|.||=.
T Consensus 313 ------------lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 313 ------------LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred ------------cCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 1111234457778888877888888888888643
No 207
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=77.68 E-value=4.1 Score=39.99 Aligned_cols=51 Identities=29% Similarity=0.345 Sum_probs=36.7
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHH
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 167 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L 167 (648)
.+||+|++|||= -+ ...+.+....+-.++|+++.|+.+ .+.++|..|.+.|
T Consensus 85 ~~~d~vv~DPPF-------l~---------------~ec~~k~a~ti~~L~k~~~kii~~----Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 85 GKFDVVVIDPPF-------LS---------------EECLTKTAETIRLLLKPGGKIILC----TGEEMEELIKKLL 135 (162)
T ss_pred CCceEEEECCCC-------CC---------------HHHHHHHHHHHHHHhCccceEEEe----cHHHHHHHHHHHh
Confidence 589999999992 11 223334444444455788999988 5788999999999
No 208
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=76.84 E-value=38 Score=38.91 Aligned_cols=145 Identities=13% Similarity=0.103 Sum_probs=86.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
||+.||--++.++.+.... ....+++.|++..-..+.+-|+--.|.. ++.+.++|...-|...
T Consensus 194 acGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~----------- 257 (489)
T COG0286 194 ACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHD----------- 257 (489)
T ss_pred CCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccc-----------
Confidence 8999999999999886421 1478999999988888877777666654 2333444332211100
Q ss_pred CcccccccccccccEEEEcCCCCCCCcccc---CcccccccCcchhhhhHHHH-HHHHHHHhhccccCc---EEEEeccc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRK---APDIWRKWNVGLGNGLHSLQ-VQIAMRGISLLKVGG---RIVYSTCS 153 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk---~p~i~~kws~~~~~~L~~lQ-~~IL~~Al~lLk~GG---~LVYSTCS 153 (648)
......+||.|+.-||=|+.|...- ....|+....... .-..-. ...+.+.+..|+||| +++..-+.
T Consensus 258 -----~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvl 331 (489)
T COG0286 258 -----DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVF-PTKNSADLAFLQHILYKLKPGGRAAIVLPDGVL 331 (489)
T ss_pred -----ccCCccceeEEEeCCCCCccccccccccccccccccccCCC-CCCCchHHHHHHHHHHhcCCCceEEEEecCCcC
Confidence 0112367999999999987766532 1222211111100 000111 555777888889865 44454444
Q ss_pred CCccccHHHHHHHHHh
Q 006372 154 MNPVENEAVVAEILRK 169 (648)
Q Consensus 154 l~p~ENEaVV~~~L~~ 169 (648)
+.- -+|..|...|-.
T Consensus 332 fr~-~~e~~IR~~l~~ 346 (489)
T COG0286 332 FRG-GAEKDIRKDLLE 346 (489)
T ss_pred cCC-CchHHHHHHHHh
Confidence 433 378888888876
No 209
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=76.45 E-value=6 Score=40.89 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCC
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 66 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p 66 (648)
+++|+|.-|..|++.. ..|+|+|.|+.-+..++.++.. .+++.+.+.|+..++
T Consensus 36 iG~G~G~lt~~L~~~~-----------~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 36 IGPGLGALTEPLLKRA-----------KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD 88 (253)
T ss_pred eCCCCCHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC
Confidence 3689999999887752 2599999999988888766533 468889999987654
No 210
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=76.21 E-value=4.1 Score=46.64 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=65.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc-CCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~-~p~~~~~~~~~~~~~~ 80 (648)
|++.|-....++. +.+.|+.+++++.-..-.+.|.+..|..|...+..-|.+ |+.+.-...
T Consensus 391 ~CGTG~iglala~-----------~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~------- 452 (534)
T KOG2187|consen 391 CCGTGTIGLALAR-----------GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCC------- 452 (534)
T ss_pred eecCCceehhhhc-----------cccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCC-------
Confidence 6666655554433 357999999999999999999999999998888874443 333221000
Q ss_pred Cccccccccccccc-EEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCC
Q 006372 81 GIESESNMGQLLFD-RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 155 (648)
Q Consensus 81 ~~~~~~~~~~~~FD-rILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~ 155 (648)
..-+ .+++|||=.| ||.. +..|+.-.+.=-++||-+|..+
T Consensus 453 ----------~~~~~v~iiDPpR~G---------------------lh~~----~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 453 ----------DSETLVAIIDPPRKG---------------------LHMK----VIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred ----------CCCceEEEECCCccc---------------------ccHH----HHHHHHhccCccceEEEEcCHH
Confidence 1224 6788998322 2322 3334444443379999999984
No 211
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=75.02 E-value=14 Score=38.02 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=58.3
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHhCCCcEE-EeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEc-CCCC
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCD-VPCS 103 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~-vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlD-vPCS 103 (648)
|--.|++.|.+++=-+.+...++...-.++. .+.+++.++|.+. ..++|.|++- +=||
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--------------------d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--------------------DGSYDTVVCTLVLCS 157 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--------------------cCCeeeEEEEEEEec
Confidence 4568999999998777777666655445554 6667887776432 2568888762 3444
Q ss_pred CCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 104 GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 104 GdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
-. -+.+.|..--++|+|||++++-
T Consensus 158 ve-----------------------~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 158 VE-----------------------DPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred cC-----------------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 22 2467789999999999999875
No 212
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=71.04 E-value=12 Score=40.61 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=31.7
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHh
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 50 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRl 50 (648)
+||++|.-+..++.. ...|+++|+++.=+...+++.+..
T Consensus 151 lGcGtG~~a~~la~~-----------g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 151 AGCGTGSLAIPLALE-----------GAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred ecCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhc
Confidence 478999988888653 247999999999999888887765
No 213
>PRK06202 hypothetical protein; Provisional
Probab=70.15 E-value=15 Score=37.23 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=30.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHH
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 47 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~l 47 (648)
++|++|.-+..|+..+... .+...|+++|.++.-+...+.+.
T Consensus 67 lGcG~G~~~~~L~~~~~~~-----g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 67 IGCGGGDLAIDLARWARRD-----GLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred eccCCCHHHHHHHHHHHhC-----CCCcEEEEEcCCHHHHHHHHhcc
Confidence 4789999888888766431 13458999999998776665443
No 214
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=69.38 E-value=15 Score=33.82 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=41.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE 61 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~D 61 (648)
.|..|.-+..++... +.+.|+|+|.++.-+..|+.+++..+.+++.+.+..
T Consensus 6 Ga~~G~~~~~~~~~~---------~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 6 GANIGDTSLYFARKG---------AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred cCCccHHHHHHHHhC---------CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 467888877776642 356899999999999999999999888887777654
No 215
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=69.23 E-value=19 Score=38.23 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=53.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
-|+-|+-|.+|+.+. ..|+|-|.|..- +.++++-|. .|...+ .+..
T Consensus 102 GAGdG~VT~~l~~~f-----------~~v~aTE~S~~M----r~rL~~kg~---~vl~~~--~w~~-------------- 147 (265)
T PF05219_consen 102 GAGDGEVTERLAPLF-----------KEVYATEASPPM----RWRLSKKGF---TVLDID--DWQQ-------------- 147 (265)
T ss_pred cCCCcHHHHHHHhhc-----------ceEEeecCCHHH----HHHHHhCCC---eEEehh--hhhc--------------
Confidence 378899999997764 359999998654 444455554 333222 1210
Q ss_pred cccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEec
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 151 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYST 151 (648)
...+||.|-|= -.+.|. ..=..||...-+.|+|+|+||-+.
T Consensus 148 -------~~~~fDvIscL------NvLDRc----------------~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 148 -------TDFKFDVISCL------NVLDRC----------------DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -------cCCceEEEeeh------hhhhcc----------------CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 12569999761 111111 111457888888999999998763
No 216
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=68.36 E-value=5.7 Score=46.43 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=65.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||||||-.--.++.|. ..+.||++|+-+-+ ..+++.....|-+. ..+...
T Consensus 51 LcaAPG~W~QVA~q~~p--------v~slivGvDl~pik-----------p~~~c~t~v~dItt-d~cr~~--------- 101 (780)
T KOG1098|consen 51 LCAAPGGWLQVASQSMP--------VGSLIVGVDLVPIK-----------PIPNCDTLVEDITT-DECRSK--------- 101 (780)
T ss_pred eccCCcHHHHHHHHhCC--------CCceEEEeeeeecc-----------cCCccchhhhhhhH-HHHHHH---------
Confidence 69999998766666654 36799999975422 12333222222110 000000
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
.-.....-+.|.||=|.- |.+=..|.. ++..-+.|=+.-|+=|..+|..||..|--.| +.|.=
T Consensus 102 ---l~k~l~t~~advVLhDga----------pnVg~~w~~-DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf---rs~dy 164 (780)
T KOG1098|consen 102 ---LRKILKTWKADVVLHDGA----------PNVGGNWVQ-DAFQQACLTLRALKLATEFLAKGGTFVTKVF---RSEDY 164 (780)
T ss_pred ---HHHHHHhCCCcEEeecCC----------CccchhHHH-HHHHhhHHHHHHHHHHHHHHHhcCccccccc---cCCcc
Confidence 000011234599998853 333223432 3334444555667778888999999765443 44555
Q ss_pred HHHHHHHH
Q 006372 161 AVVAEILR 168 (648)
Q Consensus 161 aVV~~~L~ 168 (648)
.-+.+++.
T Consensus 165 ~~ll~v~~ 172 (780)
T KOG1098|consen 165 NGLLRVFG 172 (780)
T ss_pred hHHHHHHH
Confidence 55555554
No 217
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=67.18 E-value=22 Score=36.10 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=62.3
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 83 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~ 83 (648)
+.|.-+..++.. .|.-.++..|. +.=+. ..++ ..++.++.+|... .+
T Consensus 110 G~G~~~~~l~~~---------~P~l~~~v~Dl-p~v~~----~~~~--~~rv~~~~gd~f~--~~--------------- 156 (241)
T PF00891_consen 110 GSGHFAIALARA---------YPNLRATVFDL-PEVIE----QAKE--ADRVEFVPGDFFD--PL--------------- 156 (241)
T ss_dssp TTSHHHHHHHHH---------STTSEEEEEE--HHHHC----CHHH--TTTEEEEES-TTT--CC---------------
T ss_pred cchHHHHHHHHH---------CCCCcceeecc-Hhhhh----cccc--ccccccccccHHh--hh---------------
Confidence 445555555443 24557788886 33222 2333 6678777776431 10
Q ss_pred cccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccC--cEEEEecccCCccccHH
Q 006372 84 SESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG--GRIVYSTCSMNPVENEA 161 (648)
Q Consensus 84 ~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~G--G~LVYSTCSl~p~ENEa 161 (648)
+. +|.||+ ..+...|+.... ..||+++.+.|+|| |+|+-.-.-+.+...+.
T Consensus 157 ------P~-~D~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~ 209 (241)
T PF00891_consen 157 ------PV-ADVYLL-------------RHVLHDWSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDDRTGP 209 (241)
T ss_dssp ------SS-ESEEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSSSSSH
T ss_pred ------cc-ccceee-------------ehhhhhcchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCc
Confidence 13 898888 125667876554 78999999999999 99998887776655555
Q ss_pred HHH
Q 006372 162 VVA 164 (648)
Q Consensus 162 VV~ 164 (648)
...
T Consensus 210 ~~~ 212 (241)
T PF00891_consen 210 PSA 212 (241)
T ss_dssp HHH
T ss_pred hHH
Confidence 444
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=67.17 E-value=14 Score=39.02 Aligned_cols=66 Identities=26% Similarity=0.216 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
+|.|+-|..|++. ...|+|+|+|+.-+..|.+.+. ...|+.|++.|+..++...
T Consensus 39 pG~GaLT~~Ll~~-----------~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~------------- 92 (259)
T COG0030 39 PGLGALTEPLLER-----------AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS------------- 92 (259)
T ss_pred CCCCHHHHHHHhh-----------cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh-------------
Confidence 5788999999886 3579999999999998887654 4578999999997764211
Q ss_pred ccccccccccccEEEEcCC
Q 006372 83 ESESNMGQLLFDRVLCDVP 101 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvP 101 (648)
...+++|+---|
T Consensus 93 -------l~~~~~vVaNlP 104 (259)
T COG0030 93 -------LAQPYKVVANLP 104 (259)
T ss_pred -------hcCCCEEEEcCC
Confidence 015788988877
No 219
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=65.74 E-value=6.1 Score=35.62 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=52.2
Q ss_pred CccEEEEceeeeEEEecCCCCCCcccceeeccCchhhhhhcccCcEEEcCHHHHHHHhhcCCCCcccCCChHHHHHHhcC
Q 006372 472 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 551 (648)
Q Consensus 472 ~~LKii~~GvK~F~Rq~~~~~~~~~c~~RI~qEGl~~l~p~i~kRiv~~~~~dl~~LL~~~~~~~~~~~d~e~~e~~~~l 551 (648)
++|||+..|+++=+... =.|+.++.++..+.+.-.+++|.++.++.+..|..+.+..+. -
T Consensus 11 ~~l~v~r~Gl~lg~~~k--------~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~------------~ 70 (102)
T PF13636_consen 11 PGLKVLRAGLYLGEIKK--------NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP------------P 70 (102)
T ss_dssp TTSEECECSEEEEEEET--------TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-------------
T ss_pred CCCeEEecCcEeeeEeC--------CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC------------C
Confidence 57999999999988752 289999999999999989999999999999999876664432 1
Q ss_pred CCceEEEEEe
Q 006372 552 MMGCCVIVLS 561 (648)
Q Consensus 552 ~~Gc~Vl~~~ 561 (648)
..|=++|.++
T Consensus 71 ~~G~vlv~~~ 80 (102)
T PF13636_consen 71 DKGWVLVTYE 80 (102)
T ss_dssp -EEEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 3577777776
No 220
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.17 E-value=31 Score=35.68 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=54.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEE-EEEEcCChHHHHHHHHHHHHh----------CCCcEEEeecccccCCCcccC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRM----------CTANLIVTNHEAQHFPGCRAN 71 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~-ViAnD~d~kR~~~L~~~lkRl----------g~~nv~vtn~Da~~~p~~~~~ 71 (648)
+++|-=|+.++-|+.. +|. ++.+|..+.=++.-+.++... ....+.+...|+...
T Consensus 91 sGSGYLt~~~~~mvg~--------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g------ 156 (237)
T KOG1661|consen 91 SGSGYLTACFARMVGA--------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG------ 156 (237)
T ss_pred CCccHHHHHHHHHhcC--------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc------
Confidence 3455566666656542 444 388888777777666666543 223444444454331
Q ss_pred CCCCCCCCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 72 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
......||+|-|-|-- + ++..+-+..|++||+||--
T Consensus 157 ---------------~~e~a~YDaIhvGAaa---------~-------------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 ---------------YAEQAPYDAIHVGAAA---------S-------------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ---------------CCccCCcceEEEccCc---------c-------------------ccHHHHHHhhccCCeEEEe
Confidence 1123679999997641 1 1244557889999999854
No 221
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=63.59 E-value=11 Score=42.89 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=67.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
...|+|+|.++.-...|++.+++.+. ..|.|++.|...+.. ..++|.|+=--=
T Consensus 214 a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----------------------pekvDIIVSElL---- 267 (448)
T PF05185_consen 214 AVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----------------------PEKVDIIVSELL---- 267 (448)
T ss_dssp ESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----------------------SS-EEEEEE-------
T ss_pred CeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----------------------CCceeEEEEecc----
Confidence 46999999999999999888888887 569999998776521 247888864321
Q ss_pred CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc--CCccccHHHHHHHH
Q 006372 106 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEIL 167 (648)
Q Consensus 106 Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS--l~p~ENEaVV~~~L 167 (648)
|.+.- .++--+.|..+-++|||||+++=+.++ +.|++.+.+-..+.
T Consensus 268 Gsfg~----------------nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~ 315 (448)
T PF05185_consen 268 GSFGD----------------NELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVR 315 (448)
T ss_dssp BTTBT----------------TTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHH
T ss_pred CCccc----------------cccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHH
Confidence 22211 112234578888899999999977777 67888887766654
No 222
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.56 E-value=8.3 Score=37.67 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=49.5
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
.-.|+++|+|+.-++....|+..+.+. +-+.+.|-... ....+.||.++.++| -|
T Consensus 71 ~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildl---------------------e~~~g~fDtaviNpp---FG 125 (185)
T KOG3420|consen 71 NESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDL---------------------ELKGGIFDTAVINPP---FG 125 (185)
T ss_pred CceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccch---------------------hccCCeEeeEEecCC---CC
Confidence 358999999999999999988877542 22233321110 011267999999999 45
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 107 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 107 tlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
|-.++.| .+.+..|+++.. .|||
T Consensus 126 Tk~~~aD-----------------m~fv~~al~~~~----~VyS 148 (185)
T KOG3420|consen 126 TKKKGAD-----------------MEFVSAALKVAS----AVYS 148 (185)
T ss_pred ccccccc-----------------HHHHHHHHHHHH----HHHH
Confidence 5333333 234667777766 3665
No 223
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=63.49 E-value=7.3 Score=39.86 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=49.0
Q ss_pred EEEEEEcCChHHHHHHHHHHHH------------hCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccE
Q 006372 28 GMVIANDLDVQRCNLLIHQTKR------------MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDR 95 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkR------------lg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDr 95 (648)
-.|+++|.++.-++...+.-.. ....+|.+.+.|...++.. ...+||.
T Consensus 60 ~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~--------------------~~g~fD~ 119 (218)
T PF05724_consen 60 HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE--------------------DVGKFDL 119 (218)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--------------------CHHSEEE
T ss_pred CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--------------------hcCCceE
Confidence 3899999999988776332111 1122456666665543210 1246887
Q ss_pred EEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 96 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 96 ILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
|. | |+..=.| .|+.+.+| ..+..++|+|||++++-|=..
T Consensus 120 iy-D--r~~l~Al--pp~~R~~Y---------------a~~l~~ll~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 120 IY-D--RTFLCAL--PPEMRERY---------------AQQLASLLKPGGRGLLITLEY 158 (218)
T ss_dssp EE-E--CSSTTTS---GGGHHHH---------------HHHHHHCEEEEEEEEEEEEES
T ss_pred EE-E--ecccccC--CHHHHHHH---------------HHHHHHHhCCCCcEEEEEEEc
Confidence 75 2 2222222 35554444 677889999999977665444
No 224
>PRK05785 hypothetical protein; Provisional
Probab=62.46 E-value=34 Score=34.90 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=24.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHH
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 44 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~ 44 (648)
+||++|--+.++++.. .+.|+++|.++.=++.-+
T Consensus 58 lGcGtG~~~~~l~~~~----------~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 58 VAAGKGELSYHFKKVF----------KYYVVALDYAENMLKMNL 91 (226)
T ss_pred EcCCCCHHHHHHHHhc----------CCEEEEECCCHHHHHHHH
Confidence 4789998877776642 258999999987655443
No 225
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=62.29 E-value=97 Score=31.51 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=66.9
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCC-cEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 105 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGd 105 (648)
.-.++|+|+++.=+...++++++.|.. .+.+...|+... +. .....|.|++ +|.
T Consensus 21 ~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~--l~-------------------~~e~~d~ivI----AGM 75 (205)
T PF04816_consen 21 APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV--LK-------------------PGEDVDTIVI----AGM 75 (205)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----------------------GGG---EEEE----EEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc--cC-------------------CCCCCCEEEE----ecC
Confidence 458999999999999999999999965 477777776431 10 0122577766 456
Q ss_pred CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCceEEEe
Q 006372 106 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 178 (648)
Q Consensus 106 Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~veLvd 178 (648)
|- .+-.+||.++...++...++|- .|.-+...+..+|..++ |.+++
T Consensus 76 GG--------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~~~g--f~I~~ 121 (205)
T PF04816_consen 76 GG--------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLYENG--FEIID 121 (205)
T ss_dssp -H--------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHHHTT--EEEEE
T ss_pred CH--------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHHHCC--CEEEE
Confidence 63 2557899999888776667665 45578999999999976 55554
No 226
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=62.26 E-value=16 Score=36.83 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
.|++|.-+..|+..+ +.+.|+++|+++.-+...++++ +++.+...|+..
T Consensus 51 GCG~G~~~~~L~~~~---------~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 51 GANIGMNLAALKRLL---------PFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred ecCCCHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 578888888776653 2468999999999888776543 344455555443
No 227
>PRK11524 putative methyltransferase; Provisional
Probab=61.94 E-value=13 Score=39.30 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=34.4
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
..||.|++|||=-. |.-. ......|. .......-..+|..+.++||+||.|+.. |+.
T Consensus 26 ~siDlIitDPPY~~-~~~~--~~~~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 26 ESVDLIFADPPYNI-GKNF--DGLIEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred CcccEEEECCCccc-cccc--cccccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 56999999999521 1100 01111232 1222333467899999999999998764 544
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=59.84 E-value=12 Score=38.95 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 66 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p 66 (648)
+|+|.-|..|++.. ..|+|+|.|+..+..|++.+. ..+++.+++.|+..+.
T Consensus 39 pG~G~lT~~L~~~~-----------~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 39 PGPGALTRELLKRG-----------KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp STTSCCHHHHHHHS-----------SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred CCCccchhhHhccc-----------CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 68899999887762 589999999999988887554 4578999999987754
No 229
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=59.25 E-value=24 Score=36.76 Aligned_cols=123 Identities=18% Similarity=0.164 Sum_probs=67.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+-||-+.-+-+. +--.|.|+|+++..++..++|.. .+...|-..+...
T Consensus 6 lFsG~Gg~~~g~~~a----------g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~------------ 56 (335)
T PF00145_consen 6 LFSGIGGFSLGLEQA----------GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS------------ 56 (335)
T ss_dssp ET-TTTHHHHHHHHT----------TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH------------
T ss_pred EccCccHHHHHHHhc----------CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc------------
Confidence 589999999877443 12489999999999999998875 4455665543210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
.... .+|.|+.-+||.+--...++-.. .+....|-.- ..+.++.++|--.|+=-.--|.-..+.
T Consensus 57 ------~l~~-~~D~l~ggpPCQ~fS~ag~~~~~-----~d~r~~L~~~----~~~~v~~~~Pk~~~~ENV~~l~~~~~~ 120 (335)
T PF00145_consen 57 ------DLPK-DVDLLIGGPPCQGFSIAGKRKGF-----DDPRNSLFFE----FLRIVKELKPKYFLLENVPGLLSSKNG 120 (335)
T ss_dssp ------HHHH-T-SEEEEE---TTTSTTSTHHCC-----CCHTTSHHHH----HHHHHHHHS-SEEEEEEEGGGGTGGGH
T ss_pred ------cccc-cceEEEeccCCceEecccccccc-----ccccchhhHH----HHHHHhhccceEEEecccceeeccccc
Confidence 1111 48999999999998877642221 1111223322 233345566744444333334444444
Q ss_pred HHHHHHHH
Q 006372 161 AVVAEILR 168 (648)
Q Consensus 161 aVV~~~L~ 168 (648)
.++..+++
T Consensus 121 ~~~~~i~~ 128 (335)
T PF00145_consen 121 EVFKEILE 128 (335)
T ss_dssp HHHHHHHH
T ss_pred cccccccc
Confidence 44554443
No 230
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=59.21 E-value=10 Score=39.13 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=23.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChH
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 38 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~k 38 (648)
+.|+||+.|..+++. +.+.|+|+|++..
T Consensus 82 iG~gtG~~t~~l~~~----------ga~~v~avD~~~~ 109 (228)
T TIGR00478 82 VGSSTGGFTDCALQK----------GAKEVYGVDVGYN 109 (228)
T ss_pred cccCCCHHHHHHHHc----------CCCEEEEEeCCHH
Confidence 468999999988774 2468999999887
No 231
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=56.76 E-value=38 Score=35.06 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=49.4
Q ss_pred EEEEEcCChHHHHHHHHHH------------HHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEE
Q 006372 29 MVIANDLDVQRCNLLIHQT------------KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 96 (648)
Q Consensus 29 ~ViAnD~d~kR~~~L~~~l------------kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrI 96 (648)
.|+++|.++.-+....+.. ++....++.+.+.|...++... .....||.|
T Consensus 67 ~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~------------------~~~~~fD~V 128 (226)
T PRK13256 67 KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA------------------NNLPVFDIW 128 (226)
T ss_pred cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc------------------cccCCcCee
Confidence 6999999999888764411 1122335677777765543100 001357765
Q ss_pred EEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEeccc
Q 006372 97 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 153 (648)
Q Consensus 97 LlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCS 153 (648)
.- -- ..-.+ .|+.+ .+...+..++|+|||+++.-|=.
T Consensus 129 yD-ra--~~~Al--pp~~R---------------~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 129 YD-RG--AYIAL--PNDLR---------------TNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ee-eh--hHhcC--CHHHH---------------HHHHHHHHHHhCCCcEEEEEEEe
Confidence 42 11 11111 23332 34577888899999999887643
No 232
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.58 E-value=18 Score=42.66 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=43.7
Q ss_pred ccccEEEEcC--CCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHH
Q 006372 91 LLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 168 (648)
Q Consensus 91 ~~FDrILlDv--PCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~ 168 (648)
..||.|++|+ | .|||++|.. .++.+-.+++++||+++-.||+ ..|...|.
T Consensus 165 ~~~d~~~lD~FsP-------~~np~~W~~--------------~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~ 216 (662)
T PRK01747 165 ARADAWFLDGFAP-------AKNPDMWSP--------------NLFNALARLARPGATLATFTSA-------GFVRRGLQ 216 (662)
T ss_pred ccccEEEeCCCCC-------ccChhhccH--------------HHHHHHHHHhCCCCEEEEeehH-------HHHHHHHH
Confidence 3599999995 5 689999764 4677888899999999955554 57888898
Q ss_pred hCCCce
Q 006372 169 KCEGSV 174 (648)
Q Consensus 169 ~~~g~v 174 (648)
..|-.+
T Consensus 217 ~~GF~v 222 (662)
T PRK01747 217 EAGFTV 222 (662)
T ss_pred HcCCee
Confidence 877433
No 233
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=55.63 E-value=19 Score=36.88 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
.|-||-+...|.+|..- .+.|.|+++|++.+.+.........+ .+.|.+..+|......+. ...
T Consensus 41 i~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~i~Gds~d~~~~~-~v~--------- 104 (206)
T PF04989_consen 41 IAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPHNRKAIESHPM-SPRITFIQGDSIDPEIVD-QVR--------- 104 (206)
T ss_dssp -TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHH-TSG---------
T ss_pred cCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchhchHHHhhccc-cCceEEEECCCCCHHHHH-HHH---------
Confidence 46688888888877642 14799999999765543322221222 267888877764421110 000
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEE
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 148 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LV 148 (648)
..........|++|+-= .+.-.+..|..-..++.+|+++|
T Consensus 105 ---~~~~~~~~vlVilDs~H-----------------------~~~hvl~eL~~y~plv~~G~Y~I 144 (206)
T PF04989_consen 105 ---ELASPPHPVLVILDSSH-----------------------THEHVLAELEAYAPLVSPGSYLI 144 (206)
T ss_dssp ---SS----SSEEEEESS---------------------------SSHHHHHHHHHHT--TT-EEE
T ss_pred ---HhhccCCceEEEECCCc-----------------------cHHHHHHHHHHhCccCCCCCEEE
Confidence 00011234577788751 12223555677788999999875
No 234
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.02 E-value=18 Score=38.83 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=50.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+-||-+.-+-+. +--.|.|+|.+...++.+++|. ++ .+...|-..+..
T Consensus 4 LF~G~GG~~~Gl~~a----------G~~~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~------------- 54 (315)
T TIGR00675 4 LFAGIGGIRLGFEQA----------GFKCVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISP------------- 54 (315)
T ss_pred EecCccHHHHHHHHc----------CCeEEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhh-------------
Confidence 589999999776432 1246889999999999988774 22 223344333210
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCc
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 112 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p 112 (648)
.....+|.|+.-+||.+--...++.
T Consensus 55 -------~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 55 -------SDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred -------hhCCCcCEEEecCCCcccchhcccC
Confidence 0013589999999999887765543
No 235
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=54.74 E-value=13 Score=37.39 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=30.4
Q ss_pred cccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 90 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 90 ~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
...||.|+| ||.-+... ...|.++|.+-...|+|||.|+-...
T Consensus 134 ~~~fD~I~C-----------RNVlIYF~---------~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 134 FGRFDLIFC-----------RNVLIYFD---------PETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp ---EEEEEE------------SSGGGS----------HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred cCCccEEEe-----------cCEEEEeC---------HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 367999999 45444332 56899999999999999999997743
No 236
>PRK00536 speE spermidine synthase; Provisional
Probab=54.66 E-value=54 Score=34.69 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=54.3
Q ss_pred EEEEEcCChHHHHHHHHHHHH----hCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCC
Q 006372 29 MVIANDLDVQRCNLLIHQTKR----MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 104 (648)
Q Consensus 29 ~ViAnD~d~kR~~~L~~~lkR----lg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSG 104 (648)
.|+.+|+|..=+++.++-+-. +.-|++.++.. +. .....+||.|++|..
T Consensus 96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~--------------------~~~~~~fDVIIvDs~--- 148 (262)
T PRK00536 96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL--------------------DLDIKKYDLIICLQE--- 148 (262)
T ss_pred eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh--------------------hccCCcCCEEEEcCC---
Confidence 899999999888887774433 33355665531 10 001257999999942
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhC
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 170 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~ 170 (648)
+ + ........+.|++||.+|-=+-|... ...++..+.+..
T Consensus 149 -------~------~-----------~~fy~~~~~~L~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l 188 (262)
T PRK00536 149 -------P------D-----------IHKIDGLKRMLKEDGVFISVAKHPLL--EHVSMQNALKNM 188 (262)
T ss_pred -------C------C-----------hHHHHHHHHhcCCCcEEEECCCCccc--CHHHHHHHHHHH
Confidence 0 0 12235567789999999985555443 244555555543
No 237
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=53.39 E-value=98 Score=33.73 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.1
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
..||.||+ .|++-+. .+| ...|...-..|++||.||-=|=-+
T Consensus 181 ~~FDtVF~------MGVLYHr------r~P----------l~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 181 GAFDTVFS------MGVLYHR------RSP----------LDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred CCcCEEEE------eeehhcc------CCH----------HHHHHHHHHhhCCCCEEEEEEeee
Confidence 67999998 6776322 222 223666677889999999887655
No 238
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=52.65 E-value=18 Score=38.44 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=32.4
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
..||.|+| ||.-|... ...|.+||.+=...|++||.|+--
T Consensus 201 ~~fD~IfC-----------RNVLIYFd---------~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 201 GKFDLIFC-----------RNVLIYFD---------EETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred CCCCEEEE-----------cceEEeeC---------HHHHHHHHHHHHHHhCCCCEEEEc
Confidence 56999999 56555443 578999999999999999998753
No 239
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=52.65 E-value=29 Score=36.96 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=14.3
Q ss_pred HHHHhhccccCcEEEEe
Q 006372 134 AMRGISLLKVGGRIVYS 150 (648)
Q Consensus 134 L~~Al~lLk~GG~LVYS 150 (648)
+..++++|++||++|..
T Consensus 243 ~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 243 VELAIEIAGPRAQLALV 259 (347)
T ss_pred HHHHHHHhhcCCEEEEE
Confidence 67789999999998854
No 240
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=51.80 E-value=52 Score=35.90 Aligned_cols=24 Identities=33% Similarity=0.243 Sum_probs=20.6
Q ss_pred HHHHHHHhhccccCcEEEEecccC
Q 006372 131 VQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 131 ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
+.+|.++..+|+|||+++-+|-+-
T Consensus 166 r~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 166 RQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred HHHHHHHHHhcCCCCEEEEEecCH
Confidence 458999999999999999998765
No 241
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.03 E-value=37 Score=33.18 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=42.0
Q ss_pred ccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCC
Q 006372 93 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 172 (648)
Q Consensus 93 FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g 172 (648)
.|.|+.|||= +.|.-..+...+.. .............+|..+.++||+||.++. -|+-...-. .++..+++..+
T Consensus 1 VdliitDPPY-~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i-~~~~~~~~~-~~~~~~~~~~g- 74 (231)
T PF01555_consen 1 VDLIITDPPY-NIGKDYNNYFDYGD--NKNHEEYLEWMEEWLKECYRVLKPGGSIFI-FIDDREIAG-FLFELALEIFG- 74 (231)
T ss_dssp EEEEEE---T-SSSCS-----CSCH--CCHHHHHHHHHHHHHHHHHHHEEEEEEEEE-EE-CCEECT-HHHHHHHHHHT-
T ss_pred CCEEEECCCC-CCCCCcchhhhccC--CCCHHHHHHHHHHHHHHHHhhcCCCeeEEE-EecchhhhH-HHHHHHHHHhh-
Confidence 3789999992 22221101111111 123456666778899999999999998644 444433332 36666666665
Q ss_pred ceEEEe
Q 006372 173 SVELVD 178 (648)
Q Consensus 173 ~veLvd 178 (648)
.+.+++
T Consensus 75 ~~~~~~ 80 (231)
T PF01555_consen 75 GFFLRN 80 (231)
T ss_dssp T-EEEE
T ss_pred hhheec
Confidence 455444
No 242
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=47.63 E-value=2.2e+02 Score=29.24 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=48.3
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 170 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~ 170 (648)
...|.||-|--=-.+|. +..+-..+..|=...|.-|+.+++|+|.+| |-+.--+.++-...-|...
T Consensus 135 r~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred CcccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchHHHHHHHHHH
Confidence 56899999854333343 122334566666778888999999999986 6666666666666666654
Q ss_pred CCceEEEe
Q 006372 171 EGSVELVD 178 (648)
Q Consensus 171 ~g~veLvd 178 (648)
-..|..+.
T Consensus 201 f~~Vk~vK 208 (232)
T KOG4589|consen 201 FTNVKKVK 208 (232)
T ss_pred hhhcEeeC
Confidence 33455443
No 243
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=46.95 E-value=29 Score=36.53 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=20.8
Q ss_pred CCEEEEEEcCChHHHHHHHHHHHHh
Q 006372 26 PNGMVIANDLDVQRCNLLIHQTKRM 50 (648)
Q Consensus 26 ~~G~ViAnD~d~kR~~~L~~~lkRl 50 (648)
+.-.|+|+|-++.-+.+++.+....
T Consensus 96 ~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 96 NRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred CCeEEEEcCCChHHHHHHHhccccc
Confidence 3479999999999999998886544
No 244
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=45.40 E-value=1.5e+02 Score=34.06 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=32.8
Q ss_pred ccccEEEEcCCCCCC---CccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcE
Q 006372 91 LLFDRVLCDVPCSGD---GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 146 (648)
Q Consensus 91 ~~FDrILlDvPCSGd---Gtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~ 146 (648)
..||.|+.+||=+.. |.+.....-.+-|-...+..+...++..+.+++..|++||+
T Consensus 292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~ 350 (501)
T TIGR00497 292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGT 350 (501)
T ss_pred ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCe
Confidence 469999999997653 11110001011121122234456678888889999999985
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=44.95 E-value=87 Score=33.50 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=47.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHH-HhCC-CcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTK-RMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 104 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lk-Rlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSG 104 (648)
...|+.+|+|+....+-++.++ .+|. ..+.+...|+...+. ....||.|++=+-=..
T Consensus 146 ~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~---------------------dl~~~DvV~lAalVg~ 204 (276)
T PF03059_consen 146 GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY---------------------DLKEYDVVFLAALVGM 204 (276)
T ss_dssp --EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G---------------------G----SEEEE-TT-S-
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc---------------------ccccCCEEEEhhhccc
Confidence 4578999999999998887777 5554 456777777644221 1256999999653110
Q ss_pred CCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEe
Q 006372 105 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 150 (648)
Q Consensus 105 dGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYS 150 (648)
+- . -=.+||.+-.+..++|.+|+|=
T Consensus 205 ~~----e-----------------~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 205 DA----E-----------------PKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ------------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cc----c-----------------hHHHHHHHHHhhCCCCcEEEEe
Confidence 00 0 1146788888899999988875
No 246
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=44.12 E-value=53 Score=35.75 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.0
Q ss_pred HHHHHhhccccCcEEEEecccC
Q 006372 133 IAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 133 IL~~Al~lLk~GG~LVYSTCSl 154 (648)
.+..|++++++||++++---.-
T Consensus 251 ~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 251 ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHHHHHhcCCCEEEEEeccC
Confidence 4788999999999999865443
No 247
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=43.85 E-value=51 Score=34.04 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=66.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhC-------CCcEEEeecccccC-CCcccCCCC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-------TANLIVTNHEAQHF-PGCRANKNF 74 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg-------~~nv~vtn~Da~~~-p~~~~~~~~ 74 (648)
|+=||-..-|+.+ .|.-.|+..++-.+=+.-++.++..|+ .+|+-|....+..| |++.
T Consensus 69 CGyGGLlv~Lsp~---------fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f----- 134 (249)
T KOG3115|consen 69 CGYGGLLMKLAPK---------FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFF----- 134 (249)
T ss_pred cCccchhhhcccc---------CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchh-----
Confidence 3446655555443 367789999998888888888887776 56666666666554 2211
Q ss_pred CCCCCcCcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecc
Q 006372 75 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTC 152 (648)
....-++++.== .+|..|.+-.+..+ .+..+|.+-.-+|+.||.|.++|=
T Consensus 135 --------------~kgqLskmff~f---------pdpHfk~~khk~ri-----i~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 135 --------------EKGQLSKMFFLF---------PDPHFKARKHKWRI-----ITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred --------------hhcccccceeec---------CChhHhhhhcccee-----echhHHHHHHhhhhcCceEEEEee
Confidence 111223333212 25666554333222 345678888889999999999884
No 248
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=42.34 E-value=83 Score=33.52 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.3
Q ss_pred HHHHhhccccCcEEEEe
Q 006372 134 AMRGISLLKVGGRIVYS 150 (648)
Q Consensus 134 L~~Al~lLk~GG~LVYS 150 (648)
+..++++|++||++|..
T Consensus 237 ~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 237 VPPALEALDRGGVLAVA 253 (329)
T ss_pred HHHHHHhhCCCcEEEEE
Confidence 67789999999998753
No 249
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=41.86 E-value=42 Score=35.44 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhccccCcEEEEeccc------CC------ccccHHHHHHHHHhCCCceEEEeC
Q 006372 127 HSLQVQIAMRGISLLKVGGRIVYSTCS------MN------PVENEAVVAEILRKCEGSVELVDV 179 (648)
Q Consensus 127 ~~lQ~~IL~~Al~lLk~GG~LVYSTCS------l~------p~ENEaVV~~~L~~~~g~veLvd~ 179 (648)
..--++.|.+...+|||||.||....- +- --=||+.|..+|++.| +.+++.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG--~~i~~~ 237 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG--FDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC--CEEEec
Confidence 344567789999999999999975431 11 1137899999999986 455443
No 250
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=41.59 E-value=75 Score=33.88 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=17.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCCCc
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCTAN 54 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~~n 54 (648)
..|++.|.+..|++++ +++|...
T Consensus 195 ~~Vi~~~~~~~~~~~a----~~lGa~~ 217 (343)
T PRK09880 195 AEIVCADVSPRSLSLA----REMGADK 217 (343)
T ss_pred cEEEEEeCCHHHHHHH----HHcCCcE
Confidence 3689999999998765 4578653
No 251
>KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis]
Probab=41.30 E-value=86 Score=30.79 Aligned_cols=120 Identities=20% Similarity=0.353 Sum_probs=72.4
Q ss_pred hhHHHHHhHhcCCCCCCCCCceEeecCCC----CcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEecCCCCCC
Q 006372 419 TIINSIKTFYGIDDSFQLSGQLVSRNGDT----NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNS 494 (648)
Q Consensus 419 ~~~~~I~~fYgi~~~Fp~~~~lvtRn~~g----~~~k~IYyvS~~vk~il~~N~~~g~~LKii~~GvK~F~Rq~~~~~~~ 494 (648)
.+++.+..|-|=+-+ +|+.|.... .+.-++||+|+-+...- .+. .+=++++.|. .|.|-+-
T Consensus 11 ~vfekla~yIG~Nv~-----~lidr~D~~~cfrlhkdRVyyvsEr~~k~a-~~i---sr~~L~s~Gt-c~GKFTK----- 75 (180)
T KOG3492|consen 11 VVFEKLAKYIGDNVS-----HLIDRPDGTYCFRLHKDRVYYVSERIMKLA-ACI---SRKNLVSLGT-CFGKFTK----- 75 (180)
T ss_pred HHHHHHHHHHhhhhh-----eeecCCCCceeeEeeCceEEeehHHHHHHH-hhh---cccceeEEeE-EEeeeec-----
Confidence 568889888886533 344343221 34679999999999854 443 3567788886 3444321
Q ss_pred cccceeeccCchhhhhhcccCcE-EEcCHHHHHHHhhcCCCCcccCCChHHHHHHhcCCCceEEEEEe
Q 006372 495 APCSFRISSEGLPVILPYITKQI-LYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 561 (648)
Q Consensus 495 ~~c~~RI~qEGl~~l~p~i~kRi-v~~~~~dl~~LL~~~~~~~~~~~d~e~~e~~~~l~~Gc~Vl~~~ 561 (648)
.-.||+.--.|.+|.||-.-.+ |.-+.| ...|-- +.....-++.--+++.++.-|+++.
T Consensus 76 -t~kfrlhitaL~~La~~Ak~KvWiKp~~E-m~flYG------NhvlKs~vgRitd~~p~~~GVvVys 135 (180)
T KOG3492|consen 76 -TGKFRLHITALDYLAPYAKYKVWIKPNAE-MQFLYG------NHVLKSGVGRITDGIPQHQGVVVYS 135 (180)
T ss_pred -cceEEEeeeehhhhhhhhheeEEeccCcc-cceeec------ccchhcccceecCCCCCcceEEEEe
Confidence 1489999999999999986544 555533 221111 1112222344444566666676665
No 252
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=39.65 E-value=1.4e+02 Score=30.58 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=71.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEE-eecccccCCCcccCCCCCCCCCc
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV-TNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~v-tn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
-|+.|=.+.+.+..+ |.-.-.--|.+...+..+...+...+.+|+.- ...|...-+-..
T Consensus 33 aSGtGqHa~~FA~~l---------P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~----------- 92 (204)
T PF06080_consen 33 ASGTGQHAVYFAQAL---------PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW----------- 92 (204)
T ss_pred cCCccHHHHHHHHHC---------CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc-----------
Confidence 467888899998876 34456678999999889998888888777521 112222110000
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEE-Eeccc----CC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YSTCS----MN 155 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LV-YSTCS----l~ 155 (648)
..+.......||.|++=- .-.+..-.. -..|+..|.++|++||.|+ |=-=. +.
T Consensus 93 --~~~~~~~~~~~D~i~~~N-------------------~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t 150 (204)
T PF06080_consen 93 --ELPAPLSPESFDAIFCIN-------------------MLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFT 150 (204)
T ss_pred --ccccccCCCCcceeeehh-------------------HHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence 000011235789998721 111111112 2567889999999999764 54433 33
Q ss_pred ccccHHHHHHHHHh
Q 006372 156 PVENEAVVAEILRK 169 (648)
Q Consensus 156 p~ENEaVV~~~L~~ 169 (648)
++-|+ --+..|+.
T Consensus 151 s~SN~-~FD~sLr~ 163 (204)
T PF06080_consen 151 SESNA-AFDASLRS 163 (204)
T ss_pred CcHHH-HHHHHHhc
Confidence 44444 34455554
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=39.00 E-value=2.2e+02 Score=30.98 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEE
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV 57 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~v 57 (648)
+.|+.|.||..|++.|.... ..-.-+++|+|..-+.....+++.-..+.+.|
T Consensus 83 LGsG~~~Kt~~LL~aL~~~~-----~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v 134 (319)
T TIGR03439 83 LGSGNLRKVGILLEALERQK-----KSVDYYALDVSRSELQRTLAELPLGNFSHVRC 134 (319)
T ss_pred ECCCchHHHHHHHHHHHhcC-----CCceEEEEECCHHHHHHHHHhhhhccCCCeEE
Confidence 46889999999999986421 12467999999998888877776333465555
No 254
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=38.22 E-value=7.6 Score=40.21 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=49.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
--+.||.|..|++-- +...++|.|.|+-.-++-.+....+--+.++..-..++..+++..+
T Consensus 51 TfGagGHt~~ilqk~---------se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~---------- 111 (303)
T KOG2782|consen 51 TFGAGGHTSSILQKH---------SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIAD---------- 111 (303)
T ss_pred eccCCcchHHHHHhC---------cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHH----------
Confidence 346789999887752 4678999999987655544444333223222222333333322211
Q ss_pred cccccccccccccEEEEcCCCCCCCc
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGT 107 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGt 107 (648)
.......||-||.|--||+.-.
T Consensus 112 ----~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 112 ----TGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred ----hCCCcCCcceEEeecCcccccc
Confidence 1123467999999999998754
No 255
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=35.99 E-value=85 Score=33.83 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCC-CcEEEeeccccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 64 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~-~nv~vtn~Da~~ 64 (648)
++|+=|.-|+|. ...|+|+|+|+.=+..|..+.+-... ..+.|...|...
T Consensus 68 GTGnLT~~lLe~-----------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 68 GTGNLTVKLLEA-----------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCHHHHHHHHh-----------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 678888888886 35899999999877777665543322 247788777543
No 256
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.71 E-value=1.1e+02 Score=31.15 Aligned_cols=132 Identities=16% Similarity=0.246 Sum_probs=73.8
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
|++|--+++|+..+. |....+|.|+++..++.-.+.++..+. ++.++..|-.. .
T Consensus 52 ~GSGvvstfL~~~i~--------~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~--~--------------- 105 (209)
T KOG3191|consen 52 CGSGVVSTFLASVIG--------PQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLS--G--------------- 105 (209)
T ss_pred CCcchHHHHHHHhcC--------CCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHh--h---------------
Confidence 678888898888764 457889999999999887776665554 35555555322 1
Q ss_pred ccccccccccccEEEEcCCCC--CCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccH
Q 006372 83 ESESNMGQLLFDRVLCDVPCS--GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 160 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCS--GdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENE 160 (648)
.+..+.|.++.-||=- .++-+. ...+-..|.-+ ..+. ..=-+||.+.=.+|.|-|.+.--+|.=|.- +
T Consensus 106 -----l~~~~VDvLvfNPPYVpt~~~~i~-~~~i~~a~aGG-~~Gr-~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ 175 (209)
T KOG3191|consen 106 -----LRNESVDVLVFNPPYVPTSDEEIG-DEGIASAWAGG-KDGR-EVTDRLLPQVPDILSPRGVFYLVALRANKP--K 175 (209)
T ss_pred -----hccCCccEEEECCCcCcCCcccch-hHHHHHHHhcC-cchH-HHHHHHHhhhhhhcCcCceEEeeehhhcCH--H
Confidence 1126789999888720 000000 00111123210 0111 112235555556778888777777765432 2
Q ss_pred HHHHHHHHhCC
Q 006372 161 AVVAEILRKCE 171 (648)
Q Consensus 161 aVV~~~L~~~~ 171 (648)
+++. +++..+
T Consensus 176 ei~k-~l~~~g 185 (209)
T KOG3191|consen 176 EILK-ILEKKG 185 (209)
T ss_pred HHHH-HHhhcc
Confidence 3443 666544
No 257
>PRK05599 hypothetical protein; Provisional
Probab=34.59 E-value=2e+02 Score=29.08 Aligned_cols=55 Identities=9% Similarity=0.104 Sum_probs=39.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccC
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 65 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~ 65 (648)
-|.+|-...++..+.. ...|+..+.+..+++.+.+.++..+...+.+...|..+.
T Consensus 7 Gas~GIG~aia~~l~~--------g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 7 GGTSDIAGEIATLLCH--------GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61 (246)
T ss_pred eCccHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH
Confidence 4567777788887753 246778889999999888888776655565666665553
No 258
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=34.10 E-value=1.1e+02 Score=32.10 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.3
Q ss_pred HHHHhhccccCcEEE
Q 006372 134 AMRGISLLKVGGRIV 148 (648)
Q Consensus 134 L~~Al~lLk~GG~LV 148 (648)
+..+++.|++||++|
T Consensus 237 ~~~~~~~l~~~G~iv 251 (345)
T cd08293 237 SDTVISQMNENSHII 251 (345)
T ss_pred HHHHHHHhccCCEEE
Confidence 356788899999988
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=33.87 E-value=78 Score=33.28 Aligned_cols=28 Identities=25% Similarity=0.155 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHH
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRC 40 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~ 40 (648)
|+.||+|--+++. +...|+|+|+...-+
T Consensus 88 sSTGGFTd~lLq~----------gAk~VyavDVG~~Ql 115 (245)
T COG1189 88 SSTGGFTDVLLQR----------GAKHVYAVDVGYGQL 115 (245)
T ss_pred CCCccHHHHHHHc----------CCcEEEEEEccCCcc
Confidence 7899999988664 356999999977543
No 260
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=33.31 E-value=69 Score=34.37 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.2
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCC
Q 006372 29 MVIANDLDVQRCNLLIHQTKRMCTA 53 (648)
Q Consensus 29 ~ViAnD~d~kR~~~L~~~lkRlg~~ 53 (648)
.|++.|.+..|+..+ +++|..
T Consensus 203 ~Vi~~~~~~~~~~~~----~~~Ga~ 223 (358)
T TIGR03451 203 KIIAVDIDDRKLEWA----REFGAT 223 (358)
T ss_pred eEEEEcCCHHHHHHH----HHcCCc
Confidence 589999999998877 457764
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=32.60 E-value=24 Score=39.80 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=33.9
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCC--CcEEEeecccccCC
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFP 66 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~--~nv~vtn~Da~~~p 66 (648)
-+|+|||.++.-.+-|+.+++.... .++.+.|+||..|.
T Consensus 272 crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 272 CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 5899999999999999999876554 35999999999885
No 262
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.46 E-value=2.6e+02 Score=28.56 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
|.||-...+++.+... ...|+..+.+..++..+.+.++.....++.+...|..+
T Consensus 16 as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 16 SSKGIGFGVARVLARA-------GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 4566677777777642 24788899999888888877765433355556666554
No 263
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.06 E-value=1.8e+02 Score=29.00 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 63 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~ 63 (648)
|.|+-..+++..+... .-.|++.+.+..++..+...++..+ .++.+...|..
T Consensus 12 ~sg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~ 63 (258)
T PRK12429 12 AASGIGLEIALALAKE-------GAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVT 63 (258)
T ss_pred CCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCC
Confidence 5677788888877642 2378888998888887777666544 34555555543
No 264
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.01 E-value=89 Score=34.36 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCEEEEEEcCCh-HHHHHHHHHHHHhCCCcEEEeeccc
Q 006372 5 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEA 62 (648)
Q Consensus 5 PGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~-kR~~~L~~~lkRlg~~nv~vtn~Da 62 (648)
-|+-+.|+|.+|. -+|+++|.+. +|-+ .+++||...+++...|.
T Consensus 193 LGh~aVq~AKAMG----------~rV~vis~~~~kkee----a~~~LGAd~fv~~~~d~ 237 (360)
T KOG0023|consen 193 LGHMAVQYAKAMG----------MRVTVISTSSKKKEE----AIKSLGADVFVDSTEDP 237 (360)
T ss_pred cchHHHHHHHHhC----------cEEEEEeCCchhHHH----HHHhcCcceeEEecCCH
Confidence 4677788888774 4899999986 5544 35789998877765443
No 265
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=31.53 E-value=1.5e+02 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=19.8
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhC---CCcEEEeec
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMC---TANLIVTNH 60 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg---~~nv~vtn~ 60 (648)
...|++-|.+. =+..|+.|+++.+ ..++.+...
T Consensus 69 ~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L 104 (173)
T PF10294_consen 69 AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL 104 (173)
T ss_dssp -SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred CceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence 45899999998 8899999998876 234554443
No 266
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=31.22 E-value=28 Score=37.70 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=28.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeeccc
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEA 62 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~Da 62 (648)
...|+|+|.++.-++.|+.+++..+... ..++.+|-
T Consensus 218 Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~ 254 (351)
T KOG1227|consen 218 AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN 254 (351)
T ss_pred ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc
Confidence 5699999999999999999998877542 44454443
No 267
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.85 E-value=2.6e+02 Score=27.64 Aligned_cols=129 Identities=11% Similarity=0.032 Sum_probs=61.8
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEc-CChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIAND-LDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGI 82 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD-~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~ 82 (648)
|.|+-..+++..+... ...|+... .+..+...+.+.++..+. ++.+...|..+...+.- .
T Consensus 13 ~~~~iG~~la~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~-----------~ 73 (245)
T PRK12937 13 ASRGIGAAIARRLAAD-------GFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTR-----------L 73 (245)
T ss_pred CCchHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHH-----------H
Confidence 4577778888877652 12444443 345566667666666553 45555556543211100 0
Q ss_pred ccccccccccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccC
Q 006372 83 ESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 154 (648)
Q Consensus 83 ~~~~~~~~~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl 154 (648)
...........|.|+.-+.=.+.+.+...+ +..|.. ....-..-...++..+++.++.+|++||.+++.
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~--~~~~~~-~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 142 (245)
T PRK12937 74 FDAAETAFGRIDVLVNNAGVMPLGTIADFD--LEDFDR-TIATNLRGAFVVLREAARHLGQGGRIINLSTSV 142 (245)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCC--HHHHHH-HHhhhchHHHHHHHHHHHHhccCcEEEEEeecc
Confidence 000000113578888754211111111111 111211 111112223455667777777889999998764
No 268
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=29.61 E-value=69 Score=36.16 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=28.9
Q ss_pred HHHHhHhcCCCCCCCCCceEeecCCC--CcceEEEEeCHHHHHHHH
Q 006372 422 NSIKTFYGIDDSFQLSGQLVSRNGDT--NRVKRIYYVSKSVKDALD 465 (648)
Q Consensus 422 ~~I~~fYgi~~~Fp~~~~lvtRn~~g--~~~k~IYyvS~~vk~il~ 465 (648)
....+-.||.+-|++=-.+|+- ++. .+...+.|=.+.++++..
T Consensus 201 ~~af~~~GL~~aw~rvi~vVVQ-pGvef~~~~V~~y~~~~A~~Ls~ 245 (421)
T PRK15052 201 QKAFIARGLTEALTRVIAIVVQ-PGVEFDHSNIIHYQPQEAQALSA 245 (421)
T ss_pred HHHHHHcCchhhhccceEEEEe-CCeeeCCCCeeecCHHHHHHHHH
Confidence 3445556888888876566553 322 366889998888888753
No 269
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=29.28 E-value=68 Score=34.63 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=63.4
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCCc
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 107 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdGt 107 (648)
-.|..+|+|.+=+.....-.+.+|..|+.+..+|-++- ++. .-..+||.++-|||=+=.|
T Consensus 176 k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~p----lpe---------------~~~~kFDvfiTDPpeTi~a- 235 (354)
T COG1568 176 KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNP----LPE---------------DLKRKFDVFITDPPETIKA- 235 (354)
T ss_pred ceEEEEechHHHHHHHHHHHHHhCccchhheeehhccc----ChH---------------HHHhhCCeeecCchhhHHH-
Confidence 47888999998888888888999999999888886652 110 1126899999999933222
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcE--EEEecccCCccccHHHHHH
Q 006372 108 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR--IVYSTCSMNPVENEAVVAE 165 (648)
Q Consensus 108 lrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~--LVYSTCSl~p~ENEaVV~~ 165 (648)
-+..|.|++..||--|. ..|-|-+=.+.--=--+++
T Consensus 236 ----------------------lk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr 273 (354)
T COG1568 236 ----------------------LKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQR 273 (354)
T ss_pred ----------------------HHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHH
Confidence 14568889988886532 2333444333333334444
No 270
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=29.14 E-value=1.4e+02 Score=31.33 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=13.9
Q ss_pred HHHHhhccccCcEEE-Eec
Q 006372 134 AMRGISLLKVGGRIV-YST 151 (648)
Q Consensus 134 L~~Al~lLk~GG~LV-YST 151 (648)
+..++++|++||++| |++
T Consensus 220 ~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 220 SNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred HHHHHHHhCcCcEEEEecc
Confidence 466788999999988 443
No 271
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.02 E-value=4.1e+02 Score=26.34 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=41.4
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 170 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~ 170 (648)
...|.|++-+|.=-++ ...||+ ..+ ...+....+.+++ |.+|---+|+.|--.+.++..+|++.
T Consensus 75 ~~adv~~I~VpTP~~~--~~~~Dl------------s~v-~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 75 KDADVVFICVPTPSDE--DGSPDL------------SYV-ESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp HH-SEEEE----EBET--TTSBET------------HHH-HHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred hccceEEEecCCCccc--cCCccH------------HHH-HHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhh
Confidence 3468999888743333 223332 111 2234444556667 55555578889999999999999986
Q ss_pred CC---ceEEEeC
Q 006372 171 EG---SVELVDV 179 (648)
Q Consensus 171 ~g---~veLvd~ 179 (648)
++ .|.++-.
T Consensus 139 ~~~~~~f~la~~ 150 (185)
T PF03721_consen 139 SGKKEDFHLAYS 150 (185)
T ss_dssp CCTTTCEEEEE-
T ss_pred cccccCCeEEEC
Confidence 64 4666554
No 272
>PRK13699 putative methylase; Provisional
Probab=28.61 E-value=1.6e+02 Score=30.25 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=38.8
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 170 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~ 170 (648)
..+|.|+-|||=- .|.-.+.-. .+. .......-...+..+.+.||+||.+ |+-|+.+.. ..+..++++.
T Consensus 19 ~SVDLIiTDPPY~-i~~~~~~~~---~~~---~~~~~ew~~~~l~E~~RVLKpgg~l-~if~~~~~~---~~~~~al~~~ 87 (227)
T PRK13699 19 NAVDFILTDPPYL-VGFRDRQGR---TIA---GDKTDEWLQPACNEMYRVLKKDALM-VSFYGWNRV---DRFMAAWKNA 87 (227)
T ss_pred cccceEEeCCCcc-cccccCCCc---ccc---cccHHHHHHHHHHHHHHHcCCCCEE-EEEeccccH---HHHHHHHHHC
Confidence 5689999999952 221110000 001 1112334467889999999998766 456766432 3334455554
Q ss_pred C
Q 006372 171 E 171 (648)
Q Consensus 171 ~ 171 (648)
+
T Consensus 88 G 88 (227)
T PRK13699 88 G 88 (227)
T ss_pred C
Confidence 4
No 273
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=28.52 E-value=63 Score=33.53 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=29.1
Q ss_pred cccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccc-cCcEEEEecccC
Q 006372 92 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCSM 154 (648)
Q Consensus 92 ~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk-~GG~LVYSTCSl 154 (648)
..+.+++|=||||.-... ++++..=++.+| +|-.+||||-.|
T Consensus 151 ~P~i~vlDEP~sGLDi~~---------------------~r~~~dfi~q~k~egr~viFSSH~m 193 (245)
T COG4555 151 DPSILVLDEPTSGLDIRT---------------------RRKFHDFIKQLKNEGRAVIFSSHIM 193 (245)
T ss_pred CCCeEEEcCCCCCccHHH---------------------HHHHHHHHHHhhcCCcEEEEecccH
Confidence 568999999999987631 112222334444 588999999988
No 274
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=28.40 E-value=59 Score=33.35 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=34.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE 61 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~D 61 (648)
+||++|=-+ |+++.. +...|++.|.++-....+..|.+.+|+ ++.++..|
T Consensus 86 ~gagsgLva--IAaa~a--------GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d 135 (218)
T COG3897 86 LGAGSGLVA--IAAARA--------GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHAD 135 (218)
T ss_pred cccccChHH--HHHHHh--------hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeecc
Confidence 366666544 444432 256899999999999999999988774 45555544
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=27.25 E-value=1.2e+02 Score=31.70 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=33.9
Q ss_pred EEEEEEcCChHHHHHHHHHHHHhCC---------CcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEE
Q 006372 28 GMVIANDLDVQRCNLLIHQTKRMCT---------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLC 98 (648)
Q Consensus 28 G~ViAnD~d~kR~~~L~~~lkRlg~---------~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILl 98 (648)
+.|++.|.++-=..+|..-++|+.. .++.+.+.|+..|... ....||.|-+
T Consensus 98 ~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~--------------------~~~s~DVVY~ 157 (234)
T PF04445_consen 98 CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ--------------------PDNSFDVVYF 157 (234)
T ss_dssp --EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC--------------------HSS--SEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh--------------------cCCCCCEEEE
Confidence 5799999999988888888877532 3688999998876431 1256999999
Q ss_pred cCC
Q 006372 99 DVP 101 (648)
Q Consensus 99 DvP 101 (648)
||-
T Consensus 158 DPM 160 (234)
T PF04445_consen 158 DPM 160 (234)
T ss_dssp --S
T ss_pred CCC
Confidence 984
No 276
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=26.87 E-value=1.3e+02 Score=32.70 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=44.8
Q ss_pred HHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCceEEEeCCCcCCccccCCCccccccccCCccccchhhH
Q 006372 131 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 210 (648)
Q Consensus 131 ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~W~v~~~~~~~~~~~~~ 210 (648)
.+.|..|..+|+|||+|+-- |++..|+- .|..+++..... .+...+|-. ..+ .|+...+.....+.+|+
T Consensus 220 ~~~L~~~~~~L~~gGrl~VI--SfHSLEDR-iVK~~f~~~~~~----~~~~~~~~~--~~~--~~~~lt~k~i~ps~~Ei 288 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSII--SFHSLEDR-IVKNFFRELSKF----PQPPGLPVK--ETP--LYALITKKPITPSEEEI 288 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHH-HHHHHHHHhccc----CCCCCCCcc--ccc--ceeEccCCCcCCCHHHH
Confidence 35688889999999998754 56666864 556656654211 112334421 112 37666655566777777
Q ss_pred Hhhhh
Q 006372 211 RKFRR 215 (648)
Q Consensus 211 ~~~~~ 215 (648)
..+.|
T Consensus 289 ~~NpR 293 (305)
T TIGR00006 289 KENPR 293 (305)
T ss_pred HhCcc
Confidence 66544
No 277
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.36 E-value=49 Score=28.28 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=37.0
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhC
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 170 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~ 170 (648)
..++...+++.--|-|.- ..|+..|++..+.-|.-|..+||+ |+..++++
T Consensus 23 ~~i~hT~V~~~~rGqGia----------------------~~L~~~~l~~a~~~~~kv~p~C~y--------~~~~~~~h 72 (78)
T PF14542_consen 23 IVITHTEVPPELRGQGIA----------------------KKLVEAALDYARENGLKVVPTCSY--------VAKYFRRH 72 (78)
T ss_dssp EEEEEEEE-CSSSTTTHH----------------------HHHHHHHHHHHHHTT-EEEETSHH--------HHHHHHH-
T ss_pred EEEEEEEECccccCCcHH----------------------HHHHHHHHHHHHHCCCEEEEECHH--------HHHHHHhC
Confidence 446777777776666641 467899999999999999999998 56667776
Q ss_pred C
Q 006372 171 E 171 (648)
Q Consensus 171 ~ 171 (648)
+
T Consensus 73 p 73 (78)
T PF14542_consen 73 P 73 (78)
T ss_dssp G
T ss_pred c
Confidence 4
No 278
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=26.28 E-value=1.5e+02 Score=31.42 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=23.6
Q ss_pred HHHHHhhccccCc-E-EEEecccCCccccHHHHHHHHHhCC
Q 006372 133 IAMRGISLLKVGG-R-IVYSTCSMNPVENEAVVAEILRKCE 171 (648)
Q Consensus 133 IL~~Al~lLk~GG-~-LVYSTCSl~p~ENEaVV~~~L~~~~ 171 (648)
....|-+.||+.| . .|...-. +.+-+.++..-+++.+.
T Consensus 118 fy~~~~rvLRk~Gg~iavW~Y~d-d~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 118 FYKEAYRVLRKDGGLIAVWNYND-DFVDWPEFDSVMLRLYD 157 (261)
T ss_pred HHHHHHHHcCCCCCEEEEEEccC-CCcCCHHHHHHHHHHhh
Confidence 3455677787666 2 2333322 77788888888877653
No 279
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=25.90 E-value=1.8e+02 Score=30.19 Aligned_cols=50 Identities=16% Similarity=0.022 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCc-EEEeecc
Q 006372 5 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHE 61 (648)
Q Consensus 5 PGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~n-v~vtn~D 61 (648)
+..-|..|+..-++. .|.++|+-.+...+...++.+..++... +.++..+
T Consensus 54 ~~~ttiaLaaAAr~T-------gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 54 AISTTIALAAAARQT-------GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred chHhHHHHHHHHHhc-------CCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 445677777766652 5899999999888888888888888654 3544444
No 280
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.43 E-value=1.2e+02 Score=32.71 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=51.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCc
Q 006372 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 80 (648)
Q Consensus 1 mCAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~ 80 (648)
+||+-||-..-+.+. +--.+.|+|+|+..+...++|... -.++..|-..+..-.
T Consensus 9 LFsG~GG~~lGf~~a----------gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~----------- 62 (328)
T COG0270 9 LFAGIGGLSLGFEEA----------GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA----------- 62 (328)
T ss_pred eccCCchHHHHHHhc----------CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-----------
Confidence 589999998655332 124899999999999999887642 223333333221100
Q ss_pred CcccccccccccccEEEEcCCCCCCCccccC
Q 006372 81 GIESESNMGQLLFDRVLCDVPCSGDGTLRKA 111 (648)
Q Consensus 81 ~~~~~~~~~~~~FDrILlDvPCSGdGtlrk~ 111 (648)
.....+|.|+--+||-+--...++
T Consensus 63 -------~~~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 63 -------LRKSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred -------ccccCCCEEEeCCCCcchhhcCcc
Confidence 001168999999999888777666
No 281
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=25.35 E-value=1.8e+02 Score=31.04 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.5
Q ss_pred HHHHhhccccCcEEEEecc
Q 006372 134 AMRGISLLKVGGRIVYSTC 152 (648)
Q Consensus 134 L~~Al~lLk~GG~LVYSTC 152 (648)
+..++++|++||++|..-+
T Consensus 239 ~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 239 INQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHhCcCCcEEEEEee
Confidence 6778999999999986543
No 282
>PRK07904 short chain dehydrogenase; Provisional
Probab=25.07 E-value=98 Score=31.54 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=39.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHH-HHHHHHHHHHhCCCcEEEeecccccC
Q 006372 2 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTANLIVTNHEAQHF 65 (648)
Q Consensus 2 CAAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR-~~~L~~~lkRlg~~nv~vtn~Da~~~ 65 (648)
+-|.||--.+++..+.+. +.-.|++.+.+..+ +..+.+.++..+..++.++..|..+.
T Consensus 14 tGas~giG~~la~~l~~~------gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 14 LGGTSEIGLAICERYLKN------APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT 72 (253)
T ss_pred EcCCcHHHHHHHHHHHhc------CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence 346778888888766531 11278888888775 77777777777765777777776553
No 283
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=23.40 E-value=4.9e+02 Score=26.00 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
|.||-..+++..|... .-.|+..+.+..++..+.+.++..+. .+.....|..+
T Consensus 17 as~giG~~ia~~L~~~-------G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 69 (254)
T PRK08085 17 SAQGIGFLLATGLAEY-------GAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTH 69 (254)
T ss_pred CCChHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCC
Confidence 5677777888777642 23788889988888877777766543 34444555443
No 284
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.29 E-value=2.2e+02 Score=30.50 Aligned_cols=93 Identities=25% Similarity=0.355 Sum_probs=52.4
Q ss_pred ccccEEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccc-cCcEEEEecccCCccccH---------
Q 006372 91 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCSMNPVENE--------- 160 (648)
Q Consensus 91 ~~FDrILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk-~GG~LVYSTCSl~p~ENE--------- 160 (648)
...+.|++|=|-||.--+. .++|+.++.-+| .|-.|+|||--|...|--
T Consensus 147 HePeLlILDEPFSGLDPVN---------------------~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~k 205 (300)
T COG4152 147 HEPELLILDEPFSGLDPVN---------------------VELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205 (300)
T ss_pred cCCCEEEecCCccCCChhh---------------------HHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecC
Confidence 3579999999999976532 233444433333 344555655544222100
Q ss_pred ------HHHHHHHHhCCCceEEEeCCCcCCccccCCCccccccccCCccc
Q 006372 161 ------AVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWL 204 (648)
Q Consensus 161 ------aVV~~~L~~~~g~veLvd~s~~lP~l~~~pGl~~W~v~~~~~~~ 204 (648)
.-|..+-+.++...-++.-...++.|...||+..|.-...|.|+
T Consensus 206 G~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~~~~~~G~~~ 255 (300)
T COG4152 206 GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWR 255 (300)
T ss_pred CceEEeccHHHHHHhcCCceEEEeccCchHHHhcCCCceeeeeccCCceE
Confidence 11334444455555555545556667788999998754455553
No 285
>PRK06181 short chain dehydrogenase; Provisional
Probab=23.26 E-value=3.8e+02 Score=26.91 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 3 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 3 AAPGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
-|.|+-..+++..+... ...|++.+.+......+.+.++..+. ++.+...|...
T Consensus 8 Gasg~iG~~la~~l~~~-------g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 61 (263)
T PRK06181 8 GASEGIGRALAVRLARA-------GAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSD 61 (263)
T ss_pred cCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 46778888888776542 24789999988777777776666553 45555566544
No 286
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=23.19 E-value=1.4e+02 Score=31.84 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=63.1
Q ss_pred CEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcCcccccccccccccEEEEcCCCCCCC
Q 006372 27 NGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 106 (648)
Q Consensus 27 ~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrILlDvPCSGdG 106 (648)
.-.+.++|.+++=...|+.++. +..++.|+..|+..-....+++. .+=-.||+|||---.
T Consensus 110 qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~-----------------erRglVLIDPPfE~~- 169 (279)
T COG2961 110 QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPK-----------------ERRGLVLIDPPFELK- 169 (279)
T ss_pred hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCC-----------------CcceEEEeCCCcccc-
Confidence 5689999999999999999887 66789999998765333222211 222569999992111
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCC
Q 006372 107 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 171 (648)
Q Consensus 107 tlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~ 171 (648)
++-..+. +-|..|++-..-|-..+ -.|+-+-.-+..|++...
T Consensus 170 --------------~eY~rvv----~~l~~~~kRf~~g~yai-----WYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 170 --------------DEYQRVV----EALAEAYKRFATGTYAI-----WYPIKDRRQIRRFLRALE 211 (279)
T ss_pred --------------cHHHHHH----HHHHHHHHhhcCceEEE-----EEeecchHHHHHHHHHHh
Confidence 1211222 22444444443332222 367778888888887643
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=23.09 E-value=92 Score=36.01 Aligned_cols=84 Identities=29% Similarity=0.423 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCccccCcccccccCcchhhhhHHHHHHHHHHHhhccccCcEEEEecccCCccccHHHHHHHHHhCCCce
Q 006372 95 RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSV 174 (648)
Q Consensus 95 rILlDvPCSGdGtlrk~p~i~~kws~~~~~~L~~lQ~~IL~~Al~lLk~GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~v 174 (648)
||.+|+-| |.|++ |+.|+.. |+++.|+-- ..+.|+.|+-+|++
T Consensus 119 R~~LDvGc-G~aSF----------------------------~a~l~~r-~V~t~s~a~--~d~~~~qvqfaleR----- 161 (506)
T PF03141_consen 119 RTALDVGC-GVASF----------------------------GAYLLER-NVTTMSFAP--NDEHEAQVQFALER----- 161 (506)
T ss_pred EEEEeccc-eeehh----------------------------HHHHhhC-CceEEEccc--ccCCchhhhhhhhc-----
Q ss_pred EEEeCCCcCCccccCCCccccccccCCccccchhhHHhhhhccccCCCCCCCCCCCCcCCCCCCCCCccccCCcccchhh
Q 006372 175 ELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQV 254 (648)
Q Consensus 175 eLvd~s~~lP~l~~~pGl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (648)
.+|.+...-|..+.+ ||+.
T Consensus 162 -------Gvpa~~~~~~s~rLP--------------------------fp~~---------------------------- 180 (506)
T PF03141_consen 162 -------GVPAMIGVLGSQRLP--------------------------FPSN---------------------------- 180 (506)
T ss_pred -------Ccchhhhhhcccccc--------------------------CCcc----------------------------
Q ss_pred hccccccCchhhhhccccCCceEEEccccCCCCceEE
Q 006372 255 EDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFI 291 (648)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFi 291 (648)
.|.+-+|.|++=.=...+|||+
T Consensus 181 ---------------~fDmvHcsrc~i~W~~~~g~~l 202 (506)
T PF03141_consen 181 ---------------AFDMVHCSRCLIPWHPNDGFLL 202 (506)
T ss_pred ---------------chhhhhcccccccchhccccee
No 288
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.53 E-value=49 Score=34.74 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
.|||=... +.+|. +.-.++++|.++.=...|++++.+ .+.+.|.+.|+..
T Consensus 65 YPGSP~ia-~~llR--------~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~ 114 (245)
T PF04378_consen 65 YPGSPAIA-ARLLR--------EQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYE 114 (245)
T ss_dssp EE-HHHHH-HHHS---------TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHH
T ss_pred CCCCHHHH-HHhCC--------ccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhh
Confidence 57765442 24443 256899999999999999998865 3578888888754
No 289
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=22.00 E-value=96 Score=29.55 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=32.9
Q ss_pred HhHhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEce
Q 006372 425 KTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVG 480 (648)
Q Consensus 425 ~~fYgi~~~Fp~~~~lvtRn~~g~~~k~IYyvS~~vk~il~~N~~~g~~LKii~~G 480 (648)
++|-|.. -+|-.+.++||+. | |.+||+|...+....+.. .-.+|+.+-.+
T Consensus 7 CsFcG~k-IyPG~G~~fVR~D-G---kvf~FcssKC~k~f~~kR-nPRKlkWT~~y 56 (131)
T PRK14891 7 CDYTGEE-IEPGTGTMFVRKD-G---TVLHFVDSKCEKNYDLGR-EARDLEWTEAG 56 (131)
T ss_pred ecCcCCc-ccCCCCcEEEecC-C---CEEEEecHHHHHHHHccC-CCccchhHHHH
Confidence 4566655 6898999999995 5 899999988875533221 11456554433
No 290
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=21.65 E-value=1.2e+02 Score=34.34 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=43.1
Q ss_pred HHHHhHhcCCCCCCCCCceEeecCCC--CcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEecCCCCCCcccce
Q 006372 422 NSIKTFYGIDDSFQLSGQLVSRNGDT--NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSF 499 (648)
Q Consensus 422 ~~I~~fYgi~~~Fp~~~~lvtRn~~g--~~~k~IYyvS~~vk~il~~N~~~g~~LKii~~GvK~F~Rq~~~~~~~~~c~~ 499 (648)
....+-.||.+-|++=-.+|+- ++. .+...+.|-.+.++++...=. .-+.=+|+-++...-. ...--
T Consensus 205 ~~af~~~GL~~aw~rvi~~VVQ-pGVef~~~~V~~y~~~~A~~Ls~~~~---------~~~~lvfEaHSTDYQt-~~al~ 273 (426)
T PRK15458 205 RHAFEKQGLNAIWPRIIGLVVQ-PGVEFDHTNVIDYQPEKASALSQMVE---------NYETLVFEAHSTDYQT-PQALR 273 (426)
T ss_pred HHHHHHcCchhhhccceEEEEe-CCeeecCcCccccCHHHHHHHHHHHH---------hCCCceeecCCccCCC-HHHHH
Confidence 3445556888888886566553 322 356789998888888743211 1244578877655432 11223
Q ss_pred eeccCchhh
Q 006372 500 RISSEGLPV 508 (648)
Q Consensus 500 RI~qEGl~~ 508 (648)
++..+|+.+
T Consensus 274 ~lv~dgfai 282 (426)
T PRK15458 274 QLVIDHFAI 282 (426)
T ss_pred HHHhcCcee
Confidence 344555443
No 291
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=21.50 E-value=1.7e+02 Score=30.15 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.9
Q ss_pred HHHHhhccccCcEEEEe
Q 006372 134 AMRGISLLKVGGRIVYS 150 (648)
Q Consensus 134 L~~Al~lLk~GG~LVYS 150 (648)
+..++++|++||++|..
T Consensus 201 ~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 201 VRACLESLDVGGTAVLA 217 (280)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 67789999999998743
No 292
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.50 E-value=1.2e+02 Score=34.22 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHHhHhcCCCCCCCCCceEeecCCC--CcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEecCCC
Q 006372 422 NSIKTFYGIDDSFQLSGQLVSRNGDT--NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSRE 491 (648)
Q Consensus 422 ~~I~~fYgi~~~Fp~~~~lvtRn~~g--~~~k~IYyvS~~vk~il~~N~~~g~~LKii~~GvK~F~Rq~~~~ 491 (648)
....+-.||.+-|++=-.+|+ .++. .+...+.|=.+.++++...-. .-+.=+|+-++...
T Consensus 201 ~~af~~~GL~~aw~rvi~~VV-QpGvef~~~~V~~y~~~~A~~Ls~~~~---------~~~~lvfEaHSTDY 262 (420)
T TIGR02810 201 RKAFAARGLEDAWPRVIALVV-QPGVEFDHHNVIHYQPERAQALSQVID---------NTPGLVFEAHSTDY 262 (420)
T ss_pred HHHHHHcCchhhhccceEEEe-cCCeeECCCceeecCHHHHHHHHHHHH---------hCCCceeecCCccC
Confidence 344555688888888656654 3322 366889998888888743221 12455788776544
No 293
>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]. PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.
Probab=21.41 E-value=28 Score=34.31 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=43.9
Q ss_pred cceEEEEeCHHHHHHHHhccCCCCccEEEEceeee--EEEecCCCCCCcccceeeccCchhhhhhcccCcEEEcCHHHHH
Q 006372 449 RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKM--FERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFK 526 (648)
Q Consensus 449 ~~k~IYyvS~~vk~il~~N~~~g~~LKii~~GvK~--F~Rq~~~~~~~~~c~~RI~qEGl~~l~p~i~kRiv~~~~~dl~ 526 (648)
+.+++||||..+.+.++. +.++++.|+-+ |.+. + -.||+.-+++.++.+|... .|-++..--+
T Consensus 38 ~~~~Vyyvs~~l~~~~~~------~~~~~s~G~~~G~f~k~----~----~kf~l~i~~l~~la~~~~~-kvwvk~~~e~ 102 (162)
T PF03657_consen 38 HKDRVYYVSEELMKLASN------RPNLYSLGTCLGKFTKK----G----KKFRLHITALDYLAPYAKN-KVWVKPKAEM 102 (162)
T ss_dssp CTCEEEEEEHHHHCCCTT------CHHHHCCSEEEEEE-TT----T----SEEEEEGHHHHCCCCC-SS-EEEE-HHHHH
T ss_pred ecceEEEECHHHHHHHhC------CCccceeceEEEEEecC----C----ccceeeHHHHHHhhhccce-eEEECCCceE
Confidence 458999999998776432 45555666433 5541 1 3799999999999999977 6666554444
Q ss_pred HHhhcCC
Q 006372 527 HLLQYKT 533 (648)
Q Consensus 527 ~LL~~~~ 533 (648)
.+|=..+
T Consensus 103 ~FLYGnd 109 (162)
T PF03657_consen 103 LFLYGND 109 (162)
T ss_dssp HHCTT--
T ss_pred EeeecCC
Confidence 4453333
No 294
>PRK12939 short chain dehydrogenase; Provisional
Probab=21.04 E-value=4e+02 Score=26.27 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
|.|+-..+++..+... .-.|++.+.+..++..+...++..+ .++.+...|..+
T Consensus 15 a~g~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 15 AARGLGAAFAEALAEA-------GATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 5677778888777642 1267788888877777766665444 345556566544
No 295
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=20.79 E-value=2.6e+02 Score=29.79 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.9
Q ss_pred HHHHhhccccCcEEEEe
Q 006372 134 AMRGISLLKVGGRIVYS 150 (648)
Q Consensus 134 L~~Al~lLk~GG~LVYS 150 (648)
+..++++|++||++|..
T Consensus 252 ~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 252 AFEALPALAPNGVVILF 268 (355)
T ss_pred HHHHHHHccCCcEEEEE
Confidence 67789999999988743
No 296
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.42 E-value=4e+02 Score=26.62 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCChHHHHHHHHHHHHhCCCcEEEeeccccc
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 64 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d~kR~~~L~~~lkRlg~~nv~vtn~Da~~ 64 (648)
|.|+-...++..+... ...|+..+.+..++..+...++..|. .+.....|..+
T Consensus 18 a~g~iG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 18 SSQGIGYALAEGLAQA-------GAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CcchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 4567777777766542 23688889998888877777766543 34445455443
No 297
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.16 E-value=3.9e+02 Score=24.57 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=52.2
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCCEEEEEEcCC--hHHHHHHHHHHHHhCCCcEEEeecccccCCCcccCCCCCCCCCcC
Q 006372 4 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKG 81 (648)
Q Consensus 4 APGgKT~qlae~l~~~~~~~~~~~G~ViAnD~d--~kR~~~L~~~lkRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~~ 81 (648)
|.||--..++..+... +...|+....+ ..+...+.+.++..+ .++.+...|......+. .
T Consensus 8 a~~giG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~-----------~ 69 (167)
T PF00106_consen 8 ASSGIGRALARALARR------GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIR-----------A 69 (167)
T ss_dssp TTSHHHHHHHHHHHHT------TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHH-----------H
T ss_pred CCCHHHHHHHHHHHhc------CceEEEEeeecccccccccccccccccc-ccccccccccccccccc-----------c
Confidence 4566666677666542 23577888877 888888888888777 67777777755421110 0
Q ss_pred cccccccccccccEEEEcCCCCCCCccc
Q 006372 82 IESESNMGQLLFDRVLCDVPCSGDGTLR 109 (648)
Q Consensus 82 ~~~~~~~~~~~FDrILlDvPCSGdGtlr 109 (648)
...........+|.++.=+.....+.+.
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~ 97 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLD 97 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGG
T ss_pred cccccccccccccccccccccccccccc
Confidence 0001111235688888765544444443
Done!