RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006372
(648 letters)
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 166 bits (421), Expect = 6e-45
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 42/228 (18%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 59
+ AAPGSKT Q+ + N G ++AN+ R +L R +N+ +T+
Sbjct: 124 VAAAPGSKTTQISA---------RMNNEGAILANEFSASRVKVLHANISRCGISNVALTH 174
Query: 60 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN 119
+ + F FD +L D PCSG+G +RK PD + W+
Sbjct: 175 FDGRVFGAAVPEM--------------------FDAILLDAPCSGEGVVRKDPDALKNWS 214
Query: 120 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179
+ + Q ++ L+ GG +VYSTC++N ENEAV + +VE + +
Sbjct: 215 PESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPL 274
Query: 180 SNEVPQLIHRPGLRKWKVRDKGIWLASHKH------VRKFRRIGIVPS 221
+ P + + ++ + V + R+ +P+
Sbjct: 275 GDLFPGANKALTEEGF-LH---VF--PQIYDCEGFFVARLRKTQAIPA 316
Score = 45.1 bits (107), Expect = 5e-05
Identities = 13/73 (17%), Positives = 20/73 (27%)
Query: 262 DDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDP 321
D L E + + P + FF+A L+K +P + D
Sbjct: 276 DLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDR 335
Query: 322 PKKLQNQDTEEVN 334
Q V
Sbjct: 336 EAGQIRQAATGVG 348
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 156 bits (397), Expect = 5e-43
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 37/222 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
M AAPG KT L +++ G++ A D+D R R+ N+I+ +
Sbjct: 125 MAAAPGGKTSYLAQLMRND--------GVIYAFDVDENRLRETRLNLSRLGVLNVILFHS 176
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+ H FD++L D PC+G GT+ K P+ +
Sbjct: 177 SSLHIGELNVE---------------------FDKILLDAPCTGSGTIHKNPERKWNRTM 215
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LQ+++ +G+ +LK GG +VYSTCS+ P ENE V+ L + VEL+ +
Sbjct: 216 DDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLK 273
Query: 181 NEVPQLIHRPGLRKWKVRDKGIWLASHKH------VRKFRRI 216
P L + G+ + L H + K R++
Sbjct: 274 YGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 315
Score = 39.5 bits (93), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 273 LERCMRLVPHDQNSGAFFIAVLQKV 297
++ RL P + FFIA ++K+
Sbjct: 291 IKNARRLYPDVHETSGFFIAKIRKL 315
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 158 bits (401), Expect = 2e-42
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 44/217 (20%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 59
+CAAPG K+ QL + G+++ N++ +R +L +R +N IVTN
Sbjct: 112 LCAAPGGKSTQLAA---------QMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN 162
Query: 60 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN 119
H + FDR++ D PCSG+G RK P+ ++W
Sbjct: 163 HAPAELVPHFSGF--------------------FDRIVVDAPCSGEGMFRKDPNAIKEWT 202
Query: 120 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179
Q +I I +LK G+++YSTC+ P ENE +++ ++ ++E + +
Sbjct: 203 EESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIPL 262
Query: 180 SNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRI 216
+ V G +W S + K RI
Sbjct: 263 TQSVS-----SGRSEW---------GSVAGLEKTIRI 285
Score = 37.3 bits (87), Expect = 0.015
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 273 LERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEE 332
LE+ +R+ PH F+A L + +EK + K + +KL + + +
Sbjct: 279 LEKTIRIWPHKDQGEGHFVAKLTFHGQNQMHKEKKTRKKSK--VQMTKEQEKLWTEFSND 336
Query: 333 VN 334
+
Sbjct: 337 FH 338
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 155 bits (393), Expect = 3e-41
Identities = 58/233 (24%), Positives = 87/233 (37%), Gaps = 45/233 (19%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 59
+ AAPG KT L + G+++AN++D +R L+ +R VT
Sbjct: 108 LAAAPGGKTTHLAA---------RMGGKGLLLANEVDGKRVRGLLENVERWGAPL-AVTQ 157
Query: 60 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN 119
+ F RVL D PCSG+G RK + R W
Sbjct: 158 APPRALAEAFGTY--------------------FHRVLLDAPCSGEGMFRKDREAARHWG 197
Query: 120 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179
+ +Q + + LL GG +VYSTC+ P ENE VVA L+ L D
Sbjct: 198 PSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE-FRLEDA 256
Query: 180 SNEVPQLIHRPGLRKWKVRDKGIWLAS----HKH------VRKFRRIGIVPSM 222
PG+ +W + + + H+ + +FR+ G S
Sbjct: 257 RLHPLF---APGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKEGGAWST 306
Score = 38.9 bits (91), Expect = 0.004
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 273 LERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEK 306
L + RL PH F+A +K
Sbjct: 276 LLKTARLWPHRLEGEGHFLARFRKEGGAWSTPRL 309
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 148 bits (376), Expect = 1e-40
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
MCAAPG KT L +++ G ++A ++ R L RM N I+ N
Sbjct: 90 MCAAPGGKTTHLAQLMKNK--------GTIVAVEISKTRTKALKSNINRMGVLNTIIINA 141
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+ + + FD++L D PCSG+ K + + ++
Sbjct: 142 DMRKYK-----DYLLKNEIF------------FDKILLDAPCSGNIIKDKNRN-VSEEDI 183
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
Q ++ GI LLK G +VYSTCSM ENE V+ IL+K VEL+ +
Sbjct: 184 ---KYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR-NDVELIIIK 239
Query: 181 -NEVPQLIHRPGLRKWKVR 198
NE + + G K +R
Sbjct: 240 ANEFKGINIKEGYIKGTLR 258
Score = 30.6 bits (70), Expect = 1.3
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 245 VNSDEGLQQVEDVLTSADDLEEEVSDLP-----------LERCMRLVPHDQNSGAFFIAV 293
+ +E + ++ +L +D+E + ++ +R+ P + FFIA
Sbjct: 214 MEVEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPP---NEPFFIAK 270
Query: 294 LQKV 297
L+K+
Sbjct: 271 LRKI 274
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 145 bits (367), Expect = 5e-39
Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 49/229 (21%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
CAAPG+KT L ++ G + A DLD +R + R + +
Sbjct: 109 ACAAPGNKTSHLAALLK--------NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEE 160
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+ SD +L D CSG G + +
Sbjct: 161 DFLAVS----------PSDPRYHE--------VHYILLDPSCSGSGMPSRQLEE--PGAG 200
Query: 121 GLG----NGLHSLQVQI---AMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 173
+ L Q + A+ R+VYSTCS+ ENE VV + L++ G+
Sbjct: 201 TPSPVRLHALAGFQQRALCHALT----FPSLQRLVYSTCSLCQEENEDVVRDALQQNPGA 256
Query: 174 VELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH------VRKFRRI 216
L P GL + + + + V R+
Sbjct: 257 FRLAPALPAWP----HRGLSTFPGAEHCLRASPETTLSSGFFVAVIERV 301
Score = 40.4 bits (95), Expect = 0.001
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 245 VNSDEGLQQVEDVLTSADDLEEEVSDLP------------LERCMRLVPHDQNSGAFFIA 292
+ +E V D L LP E C+R P S FF+A
Sbjct: 237 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 296
Query: 293 VLQKVS 298
V+++V
Sbjct: 297 VIERVE 302
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 135 bits (343), Expect = 1e-34
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 30/196 (15%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+ AAPG KT L E++ G + A D+D R L KRM +
Sbjct: 266 LAAAPGGKTTHLAELMKNK--------GKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVK 317
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI-WRKWN 119
+A+ P + + D+VL D PC+ GT+ K P++ WR
Sbjct: 318 DARKAPEIIGEE-------------------VADKVLLDAPCTSSGTIGKNPELRWRLRE 358
Query: 120 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179
+ + LQ ++ L+K GGR++Y+TCS+ ENE + L +LV +
Sbjct: 359 DKINE-MSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPE-FKLVPL 416
Query: 180 SNEVPQLIHRPGLRKW 195
+ +R W
Sbjct: 417 KSPYDPGFLEGTMRAW 432
Score = 38.8 bits (91), Expect = 0.005
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 245 VNSDEGLQQVEDVLT-----SADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 297
+ +E + + L L+ LE MR PH ++ FF A+L+K
Sbjct: 392 IFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKS 449
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 128 bits (325), Expect = 3e-32
Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 31/170 (18%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+CAAPG KT +LE+ P V+A D+D QR + + KR+ + T
Sbjct: 253 LCAAPGGKTTHILEV---------APEAQVVAVDIDEQRLSRVYDNLKRL---GMKATVK 300
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI-WRKWN 119
+ D S+ Q FDR+L D PCS G +R+ PDI W + +
Sbjct: 301 QG----------------DGRYPSQWCGEQQ-FDRILLDAPCSATGVIRRHPDIKWLRRD 343
Query: 120 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 169
+ L LQ +I LK GG +VY+TCS+ P EN + L++
Sbjct: 344 RDIPE-LAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392
Score = 42.2 bits (100), Expect = 4e-04
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 245 VNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 296
V +E Q++ L D E + P + + +P + FF A L K
Sbjct: 377 VLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 5e-07
Identities = 92/602 (15%), Positives = 171/602 (28%), Gaps = 199/602 (33%)
Query: 44 IHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN---MGQLLF----DRV 96
+ T R+ L Q F N+ I++E M ++ DR+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRL 119
Query: 97 LCDVPCSGDGTLRKAPDIW--RKW--------NVGL----GNG--------LHSLQVQIA 134
D + + R+ NV + G+G S +VQ
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 135 M-RGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC----EGSVELVDVSNEVPQLIH- 188
M I L + C+ E V+ + + D S+ + IH
Sbjct: 180 MDFKIFWLNLK------NCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 189 -RPGLR---KWK--------VRDKGIWLASHKHVRKF----------RRIGIVPSMFPSG 226
+ LR K K + + + + K F R + + +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN--VQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 227 SSHMDATDIEPKHGNVTDVNSDEGL--QQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQ 284
++H ++ + L +V+ +L L+ DLP E
Sbjct: 286 TTH------------ISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVL-------- 323
Query: 285 NSGAFFIAVLQKVSPLPV------VQE--------KHINPEEKMLPRNDDPPKKLQNQDT 330
+P + +++ KH+N +K+ + L +
Sbjct: 324 -----------TTNPRRLSIIAESIRDGLATWDNWKHVN-CDKLTTIIE---SSLNVLEP 368
Query: 331 EEVNGMEVDLA---DGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNT 387
E M L+ P L L V + V VN
Sbjct: 369 AEYRKMFDRLSVFPP--SAHIPTILLS----------------LIWFDVIKSDVMVVVN- 409
Query: 388 ETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDT 447
K K L ++ + K + I + +K +++ + L +V D
Sbjct: 410 --KLH----KYSL-VEKQPK--ESTISIPSIYLELKVK----LENEYALHRSIV----DH 452
Query: 448 NRVKRIYYVSKSVKDALD---LNFRVGQQLKITSVGLKM-----------FERQTSREGN 493
+ + + + LD + +G LK +M F Q R +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 494 SAPCSFRISSEGLPVIL------PYITKQI-----LYASLVDFKHLLQYKTI----KFAD 538
+A + S L + PYI L +++DF L + + K+ D
Sbjct: 512 TAWNA---SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTD 566
Query: 539 FV 540
+
Sbjct: 567 LL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-04
Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 61/182 (33%)
Query: 56 IVTN---HEAQHFPGCRANK---NFSSASDKGIESESNMGQLLF---DRVLCDVPCSGD- 105
IV N + HF G + + N+S+ + I + +F + +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 106 GTLR-------------KAP-DIWRKWNVGLGN----GLHSL-----------------Q 130
G L KA + + + + G HSL
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HSLGEYAALASLADVMSIESL 1782
Query: 131 VQI-AMRGISLLKV-----GGRIVYSTCSMNP------VENEA---VVAEILRKCEGSVE 175
V++ RG+++ GR Y ++NP EA VV + ++ VE
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 176 LV 177
+V
Sbjct: 1843 IV 1844
Score = 41.2 bits (96), Expect = 0.001
Identities = 57/313 (18%), Positives = 87/313 (27%), Gaps = 141/313 (45%)
Query: 349 PEGSLEAN----SIDNEDGAAVEPDP-LTCEKVDSEETEVPVNTETKSERTGGKRKLQIQ 403
P SL + S++N +G P P L+ + Q+Q
Sbjct: 315 PNTSLPPSILEDSLENNEGV---PSPMLSIS---------------------NLTQEQVQ 350
Query: 404 GKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKD- 462
++ N + Q+ LV NG N V VS +
Sbjct: 351 ---DYVNK---TNSH-----------LPAGKQVEISLV--NGAKNLV-----VSGPPQSL 386
Query: 463 -ALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFR---ISSEGLPVILPYITKQIL 518
L+L R + K S GL Q SR P S R S+ LPV P+
Sbjct: 387 YGLNLTLR---KAKAPS-GLD----Q-SR----IPFSERKLKFSNRFLPVASPF------ 427
Query: 519 YASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTI 578
H S L++ ++ + + N + +A I
Sbjct: 428 --------H---------------------SHLLVPASDLINK---DLVKNNVSFNAKDI 455
Query: 579 AI-----GCWKGRASLSVMVTAIDCQELLERLLMRLEI--EK------------------ 613
I LS ++ E + ++RL + E
Sbjct: 456 QIPVYDTFDGSDLRVLSGSIS-----ERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 614 --GDLVQENALGT 624
G L N GT
Sbjct: 511 GLGVLTHRNKDGT 523
Score = 39.6 bits (92), Expect = 0.003
Identities = 53/285 (18%), Positives = 87/285 (30%), Gaps = 106/285 (37%)
Query: 406 WKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRN---------GDTNRVKRIYYV 456
W D F D YG F + +V N G+ + R Y
Sbjct: 1646 WNRADN--HFKDT---------YG----FSIL-DIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 457 SKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITK- 515
+ + +D + K+F+ +S +FR S +GL L T+
Sbjct: 1690 AMIFETIVDGKLKT----------EKIFKEINE---HSTSYTFR-SEKGL---L-SATQF 1731
Query: 516 -Q--ILYASLVDFKHLLQYKTIKFADFVDA-----EFGEKASKLMMGCC----------V 557
Q + F+ L+ K + AD A E+ + L V
Sbjct: 1732 TQPALTLMEKAAFE-DLKSKGLIPADATFAGHSLGEY----AAL---ASLADVMSIESLV 1783
Query: 558 IVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVM------VTAIDCQELLERLLMRLEI 611
V+ G + + D GR++ ++ V A QE L+ ++ R+
Sbjct: 1784 EVVFYRGMTMQVAVPRDEL--------GRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 612 EKGDLVQENALGTDEVQEEMNDN---------GKEEPESLEVAVN 647
G LV E N N G + +L+ N
Sbjct: 1836 RTGWLV-EIV----------NYNVENQQYVAAG--DLRALDTVTN 1867
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 34.1 bits (79), Expect = 0.065
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 110 KAPDIWRKWN-----VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV--ENEAV 162
+A D+ K +G + + + K IV N + EN A
Sbjct: 91 RAEDVLDKLEFNKAFIGGTKNIEKIIEILD------KKKINHIV-----ANTIVLENAAK 139
Query: 163 VAEILRKCEGSVELVDVS 180
+ +V+ V+V
Sbjct: 140 IINEFESRGYNVDAVNVF 157
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 139 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
LK GGRI+ + +E + E LR V + +++
Sbjct: 122 DKLKPGGRIIVTAIL---LETKFEAMECLRDLGFDVNITELN 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.70
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 472 QQLKITSVGLKMFERQTSREGNSAP 496
Q LK LK++ +SAP
Sbjct: 20 QALKKLQASLKLY------ADDSAP 38
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.2
Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 58/186 (31%)
Query: 171 EGSVE------LVDVSNEVPQLIHRPGLRKW-------KVRDKGIWLASHKHVRKFRRIG 217
EG VE + N + G W V DK + + + G
Sbjct: 849 EGCVEMAWIMGFISYHNGNLKGRPYTG---WVDSKTKEPVDDKDVKAKYETSILE--HSG 903
Query: 218 IVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCM 277
I IEP+ N + E +Q+V +DLE +
Sbjct: 904 IRL--------------IEPELFNGYNPEKKEMIQEVI----VEEDLEPFEASKETAEQF 945
Query: 278 RL-------VPHDQNSGAFFIAVLQ-------KVSPLPVV---Q-EKHINPEEKMLPRND 319
+ + +G + + +L+ K + Q N + + +
Sbjct: 946 KHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDI 1005
Query: 320 ----DP 321
DP
Sbjct: 1006 ISQVDP 1011
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 28.6 bits (64), Expect = 6.1
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 141 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS------NEVPQLIHRPGLRK 194
LK GG+ N +++ AE++RK E + ++ G+
Sbjct: 138 LKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197
Query: 195 WKV--RDKGIWLASHK 208
+++ D+G W+ K
Sbjct: 198 YEIILGDEGFWIIISK 213
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein, hypertherm
oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 28.9 bits (64), Expect = 6.3
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 160 EAVVAEILRKCEGSVELVDVSNE-VPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGI 218
+ L EL +++ E V + + G + + KG+ ++ + + + + +
Sbjct: 368 KGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGY-NCYIYPAMAL 426
Query: 219 VPSMFPSGSSHMDATDIEP 237
G+ H +A I
Sbjct: 427 AYGTSAIGAHHKEAWVIAW 445
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 28.3 bits (63), Expect = 6.5
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 141 LKVGGRIVYSTCSMNPV--ENEAVVAEILRKCEGSVELVDVS 180
LK G IV +N V + E L VE+ V+
Sbjct: 132 LKSEGVIV-----LNAVTLDTLTKAVEFLEDHGYMVEVACVN 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,669,379
Number of extensions: 591314
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 33
Length of query: 648
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 548
Effective length of database: 3,909,693
Effective search space: 2142511764
Effective search space used: 2142511764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)