RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006372
(648 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 88.9 bits (219), Expect = 6e-20
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 29/197 (14%)
Query: 26 PNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESE 85
+G++ A D+D R R+ N+I+ + + H
Sbjct: 140 NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE-------------- 185
Query: 86 SNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 145
FD++L D PC+G GT+ K P+ + LQ+++ +G+ +LK GG
Sbjct: 186 -------FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 238
Query: 146 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLA 205
+VYSTCS+ P ENE V+ L + VEL+ + P L + G+ + L
Sbjct: 239 ILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEPALTNPFGIELSEEIKNARRLY 296
Query: 206 SHKH------VRKFRRI 216
H + K R++
Sbjct: 297 PDVHETSGFFIAKIRKL 313
Score = 43.1 bits (100), Expect = 6e-05
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 242 VTDVNSDEGLQQVEDVLTSAD----DLEEEVSDLP----------LERCMRLVPHDQNSG 287
+ +E ++ L + D L+ L ++ RL P +
Sbjct: 244 TCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETS 303
Query: 288 AFFIAVLQKV 297
FFIA ++K+
Sbjct: 304 GFFIAKIRKL 313
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 78.2 bits (191), Expect = 1e-16
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 35/201 (17%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
+CAAPG KT +LE+ ++ V+A D+D QR + + KR+ +
Sbjct: 109 LCAAPGGKTTHILEVAPEA---------QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD 159
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
C + FDR+L D PCS G +R+ PDI
Sbjct: 160 GRYPSQWCGEQQ--------------------FDRILLDAPCSATGVIRRHPDIKWLRRD 199
Query: 121 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 180
L LQ +I LK GG +VY+TCS+ P EN + L++ EL +
Sbjct: 200 RDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTAD-AELCETG 258
Query: 181 NEVPQLIHRPGLRKWKVRDKG 201
+PG + ++G
Sbjct: 259 -----TPEQPGKQNLPGAEEG 274
Score = 47.0 bits (110), Expect = 3e-06
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
Query: 201 GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNS----DEGLQQVED 256
G+ R I G + +E Q++
Sbjct: 185 GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA 244
Query: 257 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 296
L D E + P + + +P + FF A L K
Sbjct: 245 FLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 284
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 69.7 bits (169), Expect = 1e-13
Identities = 44/223 (19%), Positives = 69/223 (30%), Gaps = 37/223 (16%)
Query: 1 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 60
CAAPG+KT L ++ G + A DLD +R + R + +
Sbjct: 101 ACAAPGNKTSHLAALLK--------NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEE 152
Query: 61 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 120
+ S+ +L D CSG G + +
Sbjct: 153 DFLAVS------------------PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTP 194
Query: 121 GLGNGLHSLQVQIAMRGISLL-KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 179
Q +L R+VYSTCS+ ENE VV + L++ G+ L
Sbjct: 195 SPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPA 254
Query: 180 SNEVPQLIHRPGLRKWKVRDKGIWLASHKH------VRKFRRI 216
P GL + + + + V R+
Sbjct: 255 LPAWPH----RGLSTFPGAEHCLRASPETTLSSGFFVAVIERV 293
Score = 48.2 bits (113), Expect = 1e-06
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 23/134 (17%)
Query: 176 LVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDI 235
L+D S + R + L + + +R FPS + +T
Sbjct: 171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ--QRALCHALTFPSLQRLVYST-- 226
Query: 236 EPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLP------------LERCMRLVPHD 283
+ +E V D L LP E C+R P
Sbjct: 227 -------CSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPET 279
Query: 284 QNSGAFFIAVLQKV 297
S FF+AV+++V
Sbjct: 280 TLSSGFFVAVIERV 293
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 44.9 bits (105), Expect = 2e-05
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 93 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152
FD V+ D P G ++ +R I LLK GG + ++C
Sbjct: 216 FDLVVLDPPAFAKGKKDVERAYRAYK-------------EVNLRAIKLLKEGGILATASC 262
Query: 153 S--MNPVENEAVVAEILRKCEGSVELVDV 179
S M A+VAE + + +V+
Sbjct: 263 SHHMTEPLFYAMVAEAAQDAHRLLRVVEK 291
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 41.4 bits (96), Expect = 2e-04
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 93 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 152
FD V+ D P K + + G++L+K GG +V +C
Sbjct: 218 FDIVVLDPPAFVQH--EKDLKAGLRA-----------YFNVNFAGLNLVKDGGILVTCSC 264
Query: 153 S--MNPVENEAVVAEILRKCEGSVELVD 178
S ++ + ++ K +++++
Sbjct: 265 SQHVDLQMFKDMIIAAGAKAGKFLKMLE 292
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 31.3 bits (70), Expect = 0.35
Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 59 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW 118
+ EA H D + + +D ++ D P R +++
Sbjct: 186 HFEANHLDMANHQLVVMDVFDYFKYARRHHLT--YDIIIIDPPSFA----RNKKEVFSVS 239
Query: 119 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVEL 176
++ +G+ +L G I+ ST + M + + + + K + +
Sbjct: 240 K---------DYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290
Query: 177 V 177
+
Sbjct: 291 L 291
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 25.8 bits (57), Expect = 3.8
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 17/62 (27%)
Query: 498 SFRISSEGLPVILPYITKQILYASL----VDF--KHLLQYKTIK-------FADFVDAEF 544
SFRI + P YI + L L + K + Y +A F A +
Sbjct: 13 SFRILASDKP----YILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALY 68
Query: 545 GE 546
GE
Sbjct: 69 GE 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,331,450
Number of extensions: 108486
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 12
Length of query: 648
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 557
Effective length of database: 1,158,166
Effective search space: 645098462
Effective search space used: 645098462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)