BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006373
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
Prestin (Anion Transporter Slc26a5)
Length = 143
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 484 PRTFVLGNIPNSVTYRSIDQYPVAKSVPGVLILHIDAPIYFANASYLRERISRWIYEEEE 543
P VLG +P++ Y ID Y K +PG+ I I+APIY+AN+ + R
Sbjct: 2 PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKR------- 54
Query: 544 KLKISGETGLQYVILDMSSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNN 603
K ++G + VILD + V +D+ G+ I K G+ + LA ++V+ L +
Sbjct: 55 KTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTS 114
Query: 604 SKFIENIG-QEWIYLTVAEAV 623
++F EN +E ++ ++ +AV
Sbjct: 115 NRFFENPALKELLFHSIHDAV 135
>pdb|2KLN|A Chain A, Solution Structure Of Stas Domain Of Rv1739c From M.
Tuberculosis
Length = 130
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 501 IDQYPVAKSVPGVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDM 560
ID YP AK VPG+++ DAP+ FANA R R + ++ + +++ +L+
Sbjct: 4 IDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQ--------VEWFVLNA 55
Query: 561 SSVGSIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVA 620
S +D + + ++++ + RRG+ +A + ++ + L + ++ IG++ I++T+
Sbjct: 56 ESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLP 115
Query: 621 EAVAA 625
AV A
Sbjct: 116 TAVQA 120
>pdb|3OIR|A Chain A, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|3OIR|B Chain B, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|4DGF|A Chain A, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
pdb|4DGF|B Chain B, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
Length = 135
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 508 KSVP-GVLILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSI 566
K VP GV I I+ P +F A L+ + + EE K+ IL V I
Sbjct: 18 KVVPLGVEIYEINGPFFFGVADRLKGVLD--VIEETPKV----------FILRXRRVPVI 65
Query: 567 DTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626
D +G E ++ ++RG LLL+ + LN FIE +G+E ++ + +A+A
Sbjct: 66 DATGXHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYA 125
Query: 627 NFMLHTCK 634
++ T +
Sbjct: 126 KLLVETAE 133
>pdb|3MGL|A Chain A, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|3MGL|B Chain B, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|4DGH|A Chain A, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
pdb|4DGH|B Chain B, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
Length = 130
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 518 IDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMFEEI 577
++ P +FA A ER+ I E Q +IL + V D +GI EE
Sbjct: 26 LEGPFFFAAAETF-ERVXGSIQETP-----------QILILRLKWVPFXDITGIQTLEEX 73
Query: 578 KKVVDRRGLKLLLANPRSEVIKKLNNSKFIENIGQEWIYLTVAEAVAAC 626
+ +RG+K+L++ S V +KL + ++ +G++ +Y A++A
Sbjct: 74 IQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAA 122
>pdb|2ZFN|A Chain A, Self-Acetylation Mediated Histone H3 Lysine 56 Acetylation
By Rtt109
Length = 460
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 LFPDDPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVP 88
LFPDDP +F +Q A LL + +E R F+ + + GI+ SLA P
Sbjct: 308 LFPDDPXARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLATP 364
>pdb|3CZ7|A Chain A, Molecular Basis For The Autoregulation Of The Protein
Acetyl Transferase Rtt109
Length = 364
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 LFPDDPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVP 88
LFPDDP +F +Q A LL + +E R F+ + + GI+ SLA P
Sbjct: 245 LFPDDPXARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLATP 301
>pdb|3QM0|A Chain A, Crystal Structure Of Rtt109-Ac-Coa Complex
Length = 388
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 LFPDDPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVP 88
LFPDDP +F +Q A LL + +E R F+ + + GI+ SLA P
Sbjct: 236 LFPDDPXARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVMGISGYSLATP 292
>pdb|3Q33|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 438
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 LFPDDPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVP 88
LFPDDP +F +Q A LL + +E R F+ + + GI+ SLA P
Sbjct: 286 LFPDDPXARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVMGISGYSLATP 342
>pdb|3Q66|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q68|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
Length = 442
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 LFPDDPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVP 88
LFPDDP +F +Q A LL + +E R F+ + + GI+ SLA P
Sbjct: 290 LFPDDPXARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVMGISGYSLATP 346
>pdb|2RIM|A Chain A, Crystal Structure Of Rtt109
Length = 457
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 32 LFPDDPFRQFKNQSASRKLLLGLQYFVPILEWAPRYTFEFFKSDLLAGITIASLAVP 88
LFPDDP +F +Q A LL + +E R F+ + + GI+ SLA P
Sbjct: 305 LFPDDPKARFIHQLAEEDRLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLATP 361
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 429 GLIDYEAVIHLWKLDKFDFIVC-MSAYVGVV----FGSV--EIGLVIAVTISLLRVLLSV 481
G IDYE V + K +K IVC SAY V+ F + EIG + I+ + L+
Sbjct: 149 GRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVA 208
Query: 482 AR-PRTFVLGNIPNSVTYRSI 501
P F ++ +S T++++
Sbjct: 209 GEHPSPFPYAHVVSSTTHKTL 229
>pdb|1NRZ|A Chain A, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
pdb|1NRZ|B Chain B, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
pdb|1NRZ|C Chain C, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
pdb|1NRZ|D Chain D, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
Length = 164
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 565 SIDTSGISMFEEIKKVVDRRGLKLLLANPRSEVIKKLNNSKFIE 608
S+D I F E+ K+ + L+++ ++P ++ K+N + F E
Sbjct: 121 SLDPQDIQAFRELDKLGVKLDLRVVASDPSVNILDKINETAFCE 164
>pdb|1VC1|A Chain A, Crystal Structure Of The Tm1442 Protein From Thermotoga
Maritima, A Homolog Of The Bacillus Subtilis General
Stress Response Anti-Anti-Sigma Factor Rsbv
pdb|1VC1|B Chain B, Crystal Structure Of The Tm1442 Protein From Thermotoga
Maritima, A Homolog Of The Bacillus Subtilis General
Stress Response Anti-Anti-Sigma Factor Rsbv
pdb|1SBO|A Chain A, Solution Structure Of Putative Anti Sigma Factor
Antagonist From Thermotoga Maritima (Tm1442)
Length = 110
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 515 ILHIDAPIYFANASYLRERISRWIYEEEEKLKISGETGLQYVILDMSSVGSIDTSGISMF 574
I+ + I N+S L+E++ +I T + ++LD+SSV +D++G+
Sbjct: 16 IVRVQGDIDAYNSSELKEQLRNFI----------STTSKKKIVLDLSSVSYMDSAGLGTL 65
Query: 575 EEIKKVVDRRGLKLLLANPRSEVIKKL 601
I K G + +L++ + + + L
Sbjct: 66 VVILKDAKINGKEFILSSLKESISRIL 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,549,798
Number of Sequences: 62578
Number of extensions: 678435
Number of successful extensions: 1732
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1715
Number of HSP's gapped (non-prelim): 20
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)